-- dump date 20140619_164206 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 323098000001 SEQ_END SEQ_END NC_007406.1 3402093 3402093 DR NC_007406.1; contig end 3402093..3402093 Nitrobacter winogradskyi Nb-255 YP_316621.1 CDS dnaA NC_007406.1 567 1994 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 567..1994 Nitrobacter winogradskyi Nb-255 3677001 YP_316622.1 CDS Nwi_0002 NC_007406.1 2211 3329 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2211..3329 Nitrobacter winogradskyi Nb-255 3677002 YP_316623.1 CDS recF NC_007406.1 3391 4548 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3391..4548 Nitrobacter winogradskyi Nb-255 3676443 YP_316624.1 CDS gyrB NC_007406.1 4812 7253 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4812..7253 Nitrobacter winogradskyi Nb-255 3676444 YP_316625.1 CDS Nwi_0005 NC_007406.1 7303 7923 R hypothetical protein complement(7303..7923) Nitrobacter winogradskyi Nb-255 3676445 YP_316626.1 CDS Nwi_0006 NC_007406.1 8214 8582 R transposase, IS4 complement(8214..8582) Nitrobacter winogradskyi Nb-255 3676446 YP_316627.1 CDS Nwi_0007 NC_007406.1 8597 8995 R transposase complement(8597..8995) Nitrobacter winogradskyi Nb-255 3676447 YP_316628.1 CDS Nwi_0008 NC_007406.1 9288 9782 D hypothetical protein 9288..9782 Nitrobacter winogradskyi Nb-255 3676448 YP_316629.1 CDS Nwi_0009 NC_007406.1 10086 10658 D nitrogen-fixing NifU 10086..10658 Nitrobacter winogradskyi Nb-255 3676449 YP_316630.1 CDS Nwi_0010 NC_007406.1 10655 11857 R hypothetical protein complement(10655..11857) Nitrobacter winogradskyi Nb-255 3676450 YP_316631.1 CDS Nwi_0011 NC_007406.1 12141 12839 D peptidase M22, glycoprotease 12141..12839 Nitrobacter winogradskyi Nb-255 3676451 YP_316632.1 CDS Nwi_0012 NC_007406.1 12836 13318 D ribosomal-protein-alanine acetyltransferase 12836..13318 Nitrobacter winogradskyi Nb-255 3676452 YP_316633.1 CDS Nwi_0013 NC_007406.1 13439 13909 D ferric-uptake regulator 13439..13909 Nitrobacter winogradskyi Nb-255 3676453 YP_316634.1 CDS Nwi_0014 NC_007406.1 13929 15362 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 13929..15362 Nitrobacter winogradskyi Nb-255 3676454 YP_316635.1 CDS Nwi_0015 NC_007406.1 15367 16416 D phoH-like protein 15367..16416 Nitrobacter winogradskyi Nb-255 3676455 YP_316636.1 CDS Nwi_0016 NC_007406.1 16416 16988 D hypothetical protein 16416..16988 Nitrobacter winogradskyi Nb-255 3676456 YP_316637.1 CDS Nwi_0017 NC_007406.1 16989 18116 D ctransporter-associated region 16989..18116 Nitrobacter winogradskyi Nb-255 3676457 YP_316638.1 CDS lnt NC_007406.1 18113 19720 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 18113..19720 Nitrobacter winogradskyi Nb-255 3676458 YP_316639.1 CDS Nwi_0019 NC_007406.1 19954 20373 D XRE family transcriptional regulator 19954..20373 Nitrobacter winogradskyi Nb-255 3676459 YP_316640.1 CDS trmB NC_007406.1 20396 21169 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 20396..21169 Nitrobacter winogradskyi Nb-255 3676460 YP_316641.1 CDS Nwi_0021 NC_007406.1 21460 22242 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 21460..22242 Nitrobacter winogradskyi Nb-255 3676461 YP_316642.1 CDS nusA NC_007406.1 22246 23862 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 22246..23862 Nitrobacter winogradskyi Nb-255 3676462 YP_316643.1 CDS Nwi_0023 NC_007406.1 24107 24772 D hypothetical protein 24107..24772 Nitrobacter winogradskyi Nb-255 3675146 YP_316644.1 CDS infB NC_007406.1 24841 27456 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 24841..27456 Nitrobacter winogradskyi Nb-255 3675147 YP_316645.1 CDS rbfA NC_007406.1 27584 28024 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 27584..28024 Nitrobacter winogradskyi Nb-255 3675148 YP_316646.1 CDS truB NC_007406.1 28031 29107 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 28031..29107 Nitrobacter winogradskyi Nb-255 3675149 YP_316647.1 CDS rpsO NC_007406.1 29114 29383 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 29114..29383 Nitrobacter winogradskyi Nb-255 3675150 YP_316648.1 CDS Nwi_0028 NC_007406.1 29730 31886 D polynucleotide phosphorylase 29730..31886 Nitrobacter winogradskyi Nb-255 3675151 YP_316649.1 CDS Nwi_0029 NC_007406.1 32072 32986 R LysR family transcriptional regulator complement(32072..32986) Nitrobacter winogradskyi Nb-255 3675152 YP_316650.1 CDS Nwi_0030 NC_007406.1 33243 35432 D heme catalase/peroxidase 33243..35432 Nitrobacter winogradskyi Nb-255 3675153 YP_316651.1 CDS Nwi_0031 NC_007406.1 35623 36219 D glutathione S-transferase 35623..36219 Nitrobacter winogradskyi Nb-255 3675154 YP_316652.1 CDS Nwi_0032 NC_007406.1 36277 37110 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase complement(36277..37110) Nitrobacter winogradskyi Nb-255 3675155 YP_316653.1 CDS Nwi_0033 NC_007406.1 37283 38506 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(37283..38506) Nitrobacter winogradskyi Nb-255 3675156 YP_316654.1 CDS Nwi_0034 NC_007406.1 38590 39114 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(38590..39114) Nitrobacter winogradskyi Nb-255 3675157 YP_316655.1 CDS Nwi_0035 NC_007406.1 39551 40057 D ferric-uptake regulator 39551..40057 Nitrobacter winogradskyi Nb-255 3675158 YP_316656.1 CDS Nwi_0036 NC_007406.1 40312 40842 R hypothetical protein complement(40312..40842) Nitrobacter winogradskyi Nb-255 3675159 YP_316657.1 CDS Nwi_0037 NC_007406.1 41197 42198 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 41197..42198 Nitrobacter winogradskyi Nb-255 3675160 YP_316658.1 CDS Nwi_0038 NC_007406.1 42286 43122 R UBA/THIF-type NAD/FAD binding fold complement(42286..43122) Nitrobacter winogradskyi Nb-255 3675161 YP_316659.1 CDS Nwi_0039 NC_007406.1 43206 44549 D hypothetical protein 43206..44549 Nitrobacter winogradskyi Nb-255 3675162 YP_316660.1 CDS Nwi_0040 NC_007406.1 44680 45561 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(44680..45561) Nitrobacter winogradskyi Nb-255 3675163 YP_316661.1 CDS ubiE NC_007406.1 45682 46479 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 45682..46479 Nitrobacter winogradskyi Nb-255 3675164 YP_316662.1 CDS Nwi_0042 NC_007406.1 46476 48056 D 2-polyprenylphenol 6-hydroxylase 46476..48056 Nitrobacter winogradskyi Nb-255 3676481 YP_316663.1 CDS Nwi_0043 NC_007406.1 48119 49558 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; in the alphaproteobacteria, this protein contains an N-terminal SbtC-like domain; bifunctional SbtC-like phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 48119..49558 Nitrobacter winogradskyi Nb-255 3676482 YP_316664.1 CDS dut NC_007406.1 49555 50013 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 49555..50013 Nitrobacter winogradskyi Nb-255 3676483 YP_316665.1 CDS Nwi_0045 NC_007406.1 50291 52807 D histidine kinase 50291..52807 Nitrobacter winogradskyi Nb-255 3676484 YP_316666.1 CDS Nwi_0046 NC_007406.1 52804 54327 D hypothetical protein 52804..54327 Nitrobacter winogradskyi Nb-255 3676485 YP_316667.1 CDS Nwi_0047 NC_007406.1 54432 54752 D hypothetical protein 54432..54752 Nitrobacter winogradskyi Nb-255 3676486 YP_316668.1 CDS Nwi_0048 NC_007406.1 55254 55979 D nucleotidyl transferase 55254..55979 Nitrobacter winogradskyi Nb-255 3676487 YP_316669.1 CDS Nwi_0049 NC_007406.1 56100 59261 D hypothetical protein 56100..59261 Nitrobacter winogradskyi Nb-255 3676488 YP_316670.1 CDS Nwi_0050 NC_007406.1 59255 62863 D UvrD/REP helicase 59255..62863 Nitrobacter winogradskyi Nb-255 3676489 YP_316671.1 CDS Nwi_0051 NC_007406.1 62959 63279 D thioredoxin 62959..63279 Nitrobacter winogradskyi Nb-255 3676490 YP_316672.1 CDS Nwi_0052 NC_007406.1 63475 64803 R folylpolyglutamate synthetase complement(63475..64803) Nitrobacter winogradskyi Nb-255 3676491 YP_316673.1 CDS Nwi_0053 NC_007406.1 64800 65759 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(64800..65759) Nitrobacter winogradskyi Nb-255 3676492 YP_316674.1 CDS trpA NC_007406.1 66066 66902 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(66066..66902) Nitrobacter winogradskyi Nb-255 3676493 YP_316675.1 CDS Nwi_0055 NC_007406.1 66899 68143 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(66899..68143) Nitrobacter winogradskyi Nb-255 3676494 YP_316676.1 CDS Nwi_0056 NC_007406.1 68285 68962 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(68285..68962) Nitrobacter winogradskyi Nb-255 3676495 YP_316677.1 CDS Nwi_0057 NC_007406.1 69176 69523 R hypothetical protein complement(69176..69523) Nitrobacter winogradskyi Nb-255 3676496 YP_316678.1 CDS ihfB NC_007406.1 69770 70075 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta complement(69770..70075) Nitrobacter winogradskyi Nb-255 3676497 YP_316679.1 CDS Nwi_0059 NC_007406.1 70241 71224 R peptidase S49, SppA complement(70241..71224) Nitrobacter winogradskyi Nb-255 3676498 YP_316680.1 CDS Nwi_0060 NC_007406.1 71498 72238 R role in sulfur assimilation; CysZ-like protein complement(71498..72238) Nitrobacter winogradskyi Nb-255 3676499 YP_316681.1 CDS Nwi_0061 NC_007406.1 72425 72910 R hypothetical protein complement(72425..72910) Nitrobacter winogradskyi Nb-255 3676500 YP_316682.1 CDS Nwi_0062 NC_007406.1 73016 74020 R hypothetical protein complement(73016..74020) Nitrobacter winogradskyi Nb-255 3674261 YP_316683.1 CDS Nwi_0063 NC_007406.1 74260 75702 D amine oxidase 74260..75702 Nitrobacter winogradskyi Nb-255 3674262 YP_316684.1 CDS Nwi_0064 NC_007406.1 75699 76367 D hypothetical protein 75699..76367 Nitrobacter winogradskyi Nb-255 3674263 YP_316685.1 CDS pheT NC_007406.1 76495 78933 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(76495..78933) Nitrobacter winogradskyi Nb-255 3675533 YP_316686.1 CDS pheS NC_007406.1 78930 80039 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(78930..80039) Nitrobacter winogradskyi Nb-255 3675624 YP_316687.1 CDS rplT NC_007406.1 80156 80515 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(80156..80515) Nitrobacter winogradskyi Nb-255 3675625 YP_316688.1 CDS rpmI NC_007406.1 80581 80781 R 50S ribosomal protein L35 complement(80581..80781) Nitrobacter winogradskyi Nb-255 3675626 YP_316689.1 CDS infC NC_007406.1 81110 81625 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(81110..81625) Nitrobacter winogradskyi Nb-255 3675627 YP_316690.1 CDS Nwi_0070 NC_007406.1 81853 82626 D hypothetical protein 81853..82626 Nitrobacter winogradskyi Nb-255 3675628 YP_316691.1 CDS Nwi_0071 NC_007406.1 82679 85012 R hypothetical protein complement(82679..85012) Nitrobacter winogradskyi Nb-255 3675629 YP_316692.1 CDS Nwi_0072 NC_007406.1 85217 86920 R PAS sensor protein complement(85217..86920) Nitrobacter winogradskyi Nb-255 3675630 YP_316693.1 CDS Nwi_0073 NC_007406.1 87836 88846 D thioredoxin-like protein 87836..88846 Nitrobacter winogradskyi Nb-255 3675632 YP_316694.1 CDS Nwi_0074 NC_007406.1 88990 89664 D peptidase S16 88990..89664 Nitrobacter winogradskyi Nb-255 3675633 YP_316695.1 CDS Nwi_0075 NC_007406.1 89704 89904 D hypothetical protein 89704..89904 Nitrobacter winogradskyi Nb-255 3675634 YP_316696.1 CDS Nwi_0076 NC_007406.1 89965 90303 R nitrogen regulatory protein P-II complement(89965..90303) Nitrobacter winogradskyi Nb-255 3675635 YP_316697.1 CDS Nwi_0077 NC_007406.1 90530 91414 D hypothetical protein 90530..91414 Nitrobacter winogradskyi Nb-255 3675636 YP_316698.1 CDS Nwi_0078 NC_007406.1 91510 92412 R acyl-CoA thioesterase complement(91510..92412) Nitrobacter winogradskyi Nb-255 3675637 YP_316699.1 CDS Nwi_0079 NC_007406.1 92582 93802 D 2-octaprenyl-6-methoxyphenyl hydroxylase 92582..93802 Nitrobacter winogradskyi Nb-255 3674408 YP_316700.1 CDS Nwi_0080 NC_007406.1 94175 94603 R hypothetical protein complement(94175..94603) Nitrobacter winogradskyi Nb-255 3674409 YP_316701.1 CDS Nwi_0081 NC_007406.1 96113 97084 R ISSpo8, transposase complement(96113..97084) Nitrobacter winogradskyi Nb-255 3674410 YP_316702.1 CDS Nwi_0082 NC_007406.1 97354 98625 D class I and II aminotransferase 97354..98625 Nitrobacter winogradskyi Nb-255 3674411 YP_316703.1 CDS Nwi_0083 NC_007406.1 98638 101139 D DNA translocase FtsK 98638..101139 Nitrobacter winogradskyi Nb-255 3674412 YP_316704.1 CDS Nwi_0084 NC_007406.1 101475 102251 D Outer membrane lipoprotein carrier protein LolA 101475..102251 Nitrobacter winogradskyi Nb-255 3674851 YP_316705.1 CDS Nwi_0085 NC_007406.1 102283 103170 D exodeoxyribonuclease III 102283..103170 Nitrobacter winogradskyi Nb-255 3675050 YP_316706.1 CDS Nwi_0086 NC_007406.1 103274 103756 R cyclic nucleotide-binding protein complement(103274..103756) Nitrobacter winogradskyi Nb-255 3675051 YP_316707.1 CDS Nwi_0087 NC_007406.1 103980 104666 R transcriptional regulator complement(103980..104666) Nitrobacter winogradskyi Nb-255 3675052 YP_316708.1 CDS Nwi_0088 NC_007406.1 104886 105455 D hypothetical protein 104886..105455 Nitrobacter winogradskyi Nb-255 3675053 YP_316709.1 CDS Nwi_0089 NC_007406.1 105622 106296 R hypothetical protein complement(105622..106296) Nitrobacter winogradskyi Nb-255 3675054 YP_316710.1 CDS Nwi_0090 NC_007406.1 106293 106997 R glutathione S-transferase complement(106293..106997) Nitrobacter winogradskyi Nb-255 3675055 YP_316711.1 CDS leuS NC_007406.1 107151 109802 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 107151..109802 Nitrobacter winogradskyi Nb-255 3675056 YP_316712.1 CDS Nwi_0092 NC_007406.1 109789 110373 D hypothetical protein 109789..110373 Nitrobacter winogradskyi Nb-255 3675057 YP_316713.1 CDS holA NC_007406.1 110384 111412 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 110384..111412 Nitrobacter winogradskyi Nb-255 3674852 YP_316714.1 CDS Nwi_0094 NC_007406.1 111481 112362 R ParB-like partition protein complement(111481..112362) Nitrobacter winogradskyi Nb-255 3674853 YP_316715.1 CDS Nwi_0095 NC_007406.1 112660 113529 R cobyrinic acid a,c-diamide synthase complement(112660..113529) Nitrobacter winogradskyi Nb-255 3674678 YP_316716.1 CDS gidB NC_007406.1 113514 114347 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(113514..114347) Nitrobacter winogradskyi Nb-255 3674401 YP_316717.1 CDS Nwi_0097 NC_007406.1 114370 116241 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(114370..116241) Nitrobacter winogradskyi Nb-255 3674854 YP_316718.1 CDS trmE NC_007406.1 116402 117772 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(116402..117772) Nitrobacter winogradskyi Nb-255 3674298 YP_316719.1 CDS Nwi_0099 NC_007406.1 118015 120045 D hypothetical protein 118015..120045 Nitrobacter winogradskyi Nb-255 3674299 YP_316720.1 CDS rho NC_007406.1 120114 121379 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(120114..121379) Nitrobacter winogradskyi Nb-255 3674300 YP_316721.1 CDS Nwi_0101 NC_007406.1 121775 122197 R hypothetical protein complement(121775..122197) Nitrobacter winogradskyi Nb-255 3674301 YP_316722.1 CDS Nwi_0102 NC_007406.1 122627 123469 D hypothetical protein 122627..123469 Nitrobacter winogradskyi Nb-255 3674302 YP_316723.1 CDS Nwi_0103 NC_007406.1 123476 124084 D Maf-like protein 123476..124084 Nitrobacter winogradskyi Nb-255 3674303 YP_316724.1 CDS coaE NC_007406.1 124101 124700 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 124101..124700 Nitrobacter winogradskyi Nb-255 3674304 YP_316725.1 CDS Nwi_0105 NC_007406.1 124822 125541 D DNA polymerase III subunit epsilon 124822..125541 Nitrobacter winogradskyi Nb-255 3674305 YP_316726.1 CDS Nwi_0106 NC_007406.1 125554 126033 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(125554..126033) Nitrobacter winogradskyi Nb-255 3674306 YP_316727.1 CDS Nwi_0107 NC_007406.1 126485 127189 D hypothetical protein 126485..127189 Nitrobacter winogradskyi Nb-255 3674307 YP_316728.1 CDS Nwi_0108 NC_007406.1 127167 128675 D membrane-bound lytic murein transglycosylase 127167..128675 Nitrobacter winogradskyi Nb-255 3674308 YP_316729.1 CDS Nwi_0109 NC_007406.1 128672 129250 D Smr protein/MutS2 128672..129250 Nitrobacter winogradskyi Nb-255 3675876 YP_316730.1 CDS Nwi_0110 NC_007406.1 129419 130759 D histidine kinase 129419..130759 Nitrobacter winogradskyi Nb-255 3675877 YP_316731.1 CDS Nwi_0111 NC_007406.1 130852 131406 D Fis family transcriptional regulator 130852..131406 Nitrobacter winogradskyi Nb-255 3675878 YP_316732.1 CDS Nwi_0112 NC_007406.1 131536 132027 R hypothetical protein complement(131536..132027) Nitrobacter winogradskyi Nb-255 3675879 YP_316733.1 CDS Nwi_0113 NC_007406.1 132223 132897 D beta-lactamase-like protein 132223..132897 Nitrobacter winogradskyi Nb-255 3675880 YP_316734.1 CDS Nwi_0114 NC_007406.1 133009 135828 R Signal transduction histidine kinase complement(133009..135828) Nitrobacter winogradskyi Nb-255 3675881 YP_316735.1 CDS Nwi_0115 NC_007406.1 135988 136941 D hypothetical protein 135988..136941 Nitrobacter winogradskyi Nb-255 3675882 YP_316736.1 CDS Nwi_0116 NC_007406.1 136979 137335 D hypothetical protein 136979..137335 Nitrobacter winogradskyi Nb-255 3675883 YP_316737.1 CDS Nwi_0117 NC_007406.1 137378 138331 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 137378..138331 Nitrobacter winogradskyi Nb-255 3675884 YP_316738.1 CDS Nwi_0118 NC_007406.1 138414 139952 D Mg chelatase-like protein 138414..139952 Nitrobacter winogradskyi Nb-255 3676187 YP_316739.1 CDS Nwi_0119 NC_007406.1 140139 142403 D Signal transduction histidine kinase 140139..142403 Nitrobacter winogradskyi Nb-255 3676188 YP_316740.1 CDS Nwi_0120 NC_007406.1 142490 143446 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(142490..143446) Nitrobacter winogradskyi Nb-255 3676189 YP_316741.2 CDS hisE NC_007406.1 143665 143988 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(143665..143988) Nitrobacter winogradskyi Nb-255 3676190 YP_316742.1 CDS Nwi_0122 NC_007406.1 144067 144843 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(144067..144843) Nitrobacter winogradskyi Nb-255 3676191 YP_316743.2 CDS Nwi_0123 NC_007406.1 144859 145599 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(144859..145599) Nitrobacter winogradskyi Nb-255 3676192 YP_316744.1 CDS hisH NC_007406.1 145596 146246 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(145596..146246) Nitrobacter winogradskyi Nb-255 3676193 YP_316745.1 CDS Nwi_0125 NC_007406.1 146243 146791 R hypothetical protein complement(146243..146791) Nitrobacter winogradskyi Nb-255 3676194 YP_316746.1 CDS hisB NC_007406.1 146794 147387 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(146794..147387) Nitrobacter winogradskyi Nb-255 3676195 YP_316747.1 CDS Nwi_0127 NC_007406.1 147685 148239 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 147685..148239 Nitrobacter winogradskyi Nb-255 3676196 YP_316748.1 CDS Nwi_0128 NC_007406.1 148243 148722 D N-acetyltransferase 148243..148722 Nitrobacter winogradskyi Nb-255 3676197 YP_316749.1 CDS hslU NC_007406.1 148795 150096 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 148795..150096 Nitrobacter winogradskyi Nb-255 3676198 YP_316750.1 CDS Nwi_0130 NC_007406.1 150408 151742 D polyhydroxyalkanoate depolymerase 150408..151742 Nitrobacter winogradskyi Nb-255 3676199 YP_316751.1 CDS Nwi_0131 NC_007406.1 151952 152788 D hypothetical protein 151952..152788 Nitrobacter winogradskyi Nb-255 3676200 YP_316752.1 CDS Nwi_0132 NC_007406.1 152996 155200 R penicillin-binding protein 1A complement(152996..155200) Nitrobacter winogradskyi Nb-255 3676201 YP_316753.1 CDS Nwi_0133 NC_007406.1 155426 158203 R catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase complement(155426..158203) Nitrobacter winogradskyi Nb-255 3676202 YP_316754.1 CDS hslO NC_007406.1 158519 159523 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; heat shock protein 33 158519..159523 Nitrobacter winogradskyi Nb-255 3676203 YP_316755.1 CDS apaG NC_007406.1 159648 160361 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(159648..160361) Nitrobacter winogradskyi Nb-255 3676204 YP_316756.1 CDS Nwi_0136 NC_007406.1 160453 161700 D acyltransferase 160453..161700 Nitrobacter winogradskyi Nb-255 3674417 YP_316757.1 CDS Nwi_0137 NC_007406.1 161697 162458 D hypothetical protein 161697..162458 Nitrobacter winogradskyi Nb-255 3674133 YP_316758.1 CDS Nwi_0138 NC_007406.1 162455 163438 D lysophospholipase L1 and related esterase 162455..163438 Nitrobacter winogradskyi Nb-255 3674134 YP_316759.1 CDS Nwi_0139 NC_007406.1 163474 164667 R catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis; O-succinylhomoserine sulfhydrylase complement(163474..164667) Nitrobacter winogradskyi Nb-255 3674135 YP_316760.1 CDS Nwi_0140 NC_007406.1 164942 166048 D Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 164942..166048 Nitrobacter winogradskyi Nb-255 3674136 YP_316761.1 CDS Nwi_0141 NC_007406.1 166460 166840 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 166460..166840 Nitrobacter winogradskyi Nb-255 3674137 YP_316762.1 CDS Nwi_0142 NC_007406.1 167204 167488 D hypothetical protein 167204..167488 Nitrobacter winogradskyi Nb-255 3674139 YP_316763.1 CDS Nwi_0143 NC_007406.1 167648 168124 D hypothetical protein 167648..168124 Nitrobacter winogradskyi Nb-255 3674140 YP_316764.1 CDS Nwi_0144 NC_007406.1 168478 169071 D electron transport protein SCO1/SenC 168478..169071 Nitrobacter winogradskyi Nb-255 3674141 YP_316765.1 CDS Nwi_0145 NC_007406.1 169062 169712 R glycosyl transferase family protein complement(169062..169712) Nitrobacter winogradskyi Nb-255 3674142 YP_316766.1 CDS Nwi_0146 NC_007406.1 169807 170268 D hypothetical protein 169807..170268 Nitrobacter winogradskyi Nb-255 3674143 YP_316767.1 CDS Nwi_0147 NC_007406.1 171280 172266 R transposase complement(171280..172266) Nitrobacter winogradskyi Nb-255 3674144 YP_316768.1 CDS Nwi_0148 NC_007406.1 172784 173245 R hypothetical protein complement(172784..173245) Nitrobacter winogradskyi Nb-255 3674145 YP_316769.1 CDS Nwi_0149 NC_007406.1 173398 174750 R glycosyl transferase family protein complement(173398..174750) Nitrobacter winogradskyi Nb-255 3674146 YP_316770.1 CDS Nwi_0150 NC_007406.1 174846 175766 D ABC transporter substrate-binding protein 174846..175766 Nitrobacter winogradskyi Nb-255 3674147 YP_316771.1 CDS lysK NC_007406.1 175870 177501 D class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 175870..177501 Nitrobacter winogradskyi Nb-255 3674148 YP_316772.1 CDS Nwi_0152 NC_007406.1 177645 178163 D ErfK/YbiS/YcfS/YnhG protein 177645..178163 Nitrobacter winogradskyi Nb-255 3674149 YP_316773.1 CDS pyrE NC_007406.1 178339 178902 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 178339..178902 Nitrobacter winogradskyi Nb-255 3674150 YP_316774.1 CDS Nwi_0154 NC_007406.1 178934 179506 R nuclease complement(178934..179506) Nitrobacter winogradskyi Nb-255 3674170 YP_316775.1 CDS Nwi_0155 NC_007406.1 179739 180005 R hypothetical protein complement(179739..180005) Nitrobacter winogradskyi Nb-255 3674171 YP_316776.1 CDS Nwi_0156 NC_007406.1 180146 181498 D tRNA and rRNA cytosine-C5-methylase 180146..181498 Nitrobacter winogradskyi Nb-255 3674172 YP_316777.1 CDS Nwi_0157 NC_007406.1 181625 183379 D heparinase II/III-like 181625..183379 Nitrobacter winogradskyi Nb-255 3674173 YP_316778.1 CDS purH NC_007406.1 183485 185077 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 183485..185077 Nitrobacter winogradskyi Nb-255 3674174 YP_316779.1 CDS Nwi_0159 NC_007406.1 185184 185954 D cytochrome c, class I 185184..185954 Nitrobacter winogradskyi Nb-255 3674175 YP_316780.1 CDS Nwi_0160 NC_007406.1 186074 187462 R major facilitator superfamily transporter complement(186074..187462) Nitrobacter winogradskyi Nb-255 3674176 YP_316781.1 CDS Nwi_0161 NC_007406.1 187584 189338 D gamma-glutamyltranspeptidase 187584..189338 Nitrobacter winogradskyi Nb-255 3674873 YP_316782.1 CDS Nwi_0162 NC_007406.1 189383 190732 D multi anti extrusion protein MatE 189383..190732 Nitrobacter winogradskyi Nb-255 3675775 YP_316783.1 CDS Nwi_0163 NC_007406.1 190817 191737 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 190817..191737 Nitrobacter winogradskyi Nb-255 3675776 YP_316784.1 CDS Nwi_0164 NC_007406.1 191782 192474 R glutathione S-transferase complement(191782..192474) Nitrobacter winogradskyi Nb-255 3675777 YP_316785.1 CDS uppP NC_007406.1 192738 193544 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 192738..193544 Nitrobacter winogradskyi Nb-255 3675778 YP_316786.1 CDS Nwi_0166 NC_007406.1 193564 194625 R NAD-dependent epimerase/dehydratase complement(193564..194625) Nitrobacter winogradskyi Nb-255 3675779 YP_316787.1 CDS Nwi_0167 NC_007406.1 194958 195530 D hypothetical protein 194958..195530 Nitrobacter winogradskyi Nb-255 3675781 YP_316788.1 CDS Nwi_0168 NC_007406.1 195801 196160 R hypothetical protein complement(195801..196160) Nitrobacter winogradskyi Nb-255 3675782 YP_316789.1 CDS Nwi_0169 NC_007406.1 196227 197042 R hypothetical protein complement(196227..197042) Nitrobacter winogradskyi Nb-255 3675783 YP_316790.1 CDS Nwi_0170 NC_007406.1 197184 197468 D hypothetical protein 197184..197468 Nitrobacter winogradskyi Nb-255 3675784 YP_316791.1 CDS Nwi_0171 NC_007406.1 197468 198088 D 3'-5' exonuclease 197468..198088 Nitrobacter winogradskyi Nb-255 3676627 YP_316792.1 CDS Nwi_0172 NC_007406.1 198297 198989 D hypothetical protein 198297..198989 Nitrobacter winogradskyi Nb-255 3676628 YP_316793.1 CDS Nwi_0173 NC_007406.1 198986 199669 D OstA-like protein 198986..199669 Nitrobacter winogradskyi Nb-255 3676629 YP_316794.1 CDS Nwi_0174 NC_007406.1 199980 200978 D ABC transporter ATPase 199980..200978 Nitrobacter winogradskyi Nb-255 3676630 YP_316795.1 CDS Nwi_0175 NC_007406.1 201036 201323 R hypothetical protein complement(201036..201323) Nitrobacter winogradskyi Nb-255 3676631 YP_316796.1 CDS Nwi_0176 NC_007406.1 201488 201868 D hypothetical protein 201488..201868 Nitrobacter winogradskyi Nb-255 3676632 YP_316797.1 CDS Nwi_0177 NC_007406.1 202121 203752 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 202121..203752 Nitrobacter winogradskyi Nb-255 3676633 YP_316798.1 CDS Nwi_0178 NC_007406.1 203809 204405 D sigma 54 modulation protein/ribosomal protein S30EA 203809..204405 Nitrobacter winogradskyi Nb-255 3676634 YP_316799.1 CDS Nwi_0179 NC_007406.1 204654 205115 D PTS system transporter subunit IIA-like nitrogen-regulatory protein PtsN 204654..205115 Nitrobacter winogradskyi Nb-255 3676635 YP_316800.1 CDS Nwi_0180 NC_007406.1 205145 205675 R transposase, IS4 complement(205145..205675) Nitrobacter winogradskyi Nb-255 3676636 YP_316801.1 CDS Nwi_0181 NC_007406.1 205528 205926 R transposase complement(205528..205926) Nitrobacter winogradskyi Nb-255 3676637 YP_316802.1 CDS Nwi_0182 NC_007406.1 205982 207352 R glutamate--cysteine ligase complement(205982..207352) Nitrobacter winogradskyi Nb-255 3676638 YP_316803.1 CDS Nwi_0183 NC_007406.1 207838 211017 D Sel1 repeat-containing protein 207838..211017 Nitrobacter winogradskyi Nb-255 3676639 YP_316804.1 CDS Nwi_0184 NC_007406.1 211095 212126 D hypothetical protein 211095..212126 Nitrobacter winogradskyi Nb-255 3676640 YP_316805.1 CDS Nwi_0185 NC_007406.1 212123 212914 D hypothetical protein 212123..212914 Nitrobacter winogradskyi Nb-255 3676641 YP_316806.1 CDS Nwi_0186 NC_007406.1 213080 213805 R metallophosphoesterase complement(213080..213805) Nitrobacter winogradskyi Nb-255 3676642 YP_316807.1 CDS Nwi_0187 NC_007406.1 213813 216320 R DEAD/DEAH box helicase complement(213813..216320) Nitrobacter winogradskyi Nb-255 3676643 YP_316808.1 CDS Nwi_0188 NC_007406.1 216696 218057 D outer membrane protein 216696..218057 Nitrobacter winogradskyi Nb-255 3676644 YP_316809.1 CDS Nwi_0189 NC_007406.1 218552 219475 D metalloprotease; heat shock protein HtpX 218552..219475 Nitrobacter winogradskyi Nb-255 3676645 YP_316810.1 CDS Nwi_0190 NC_007406.1 219789 221012 D hypothetical protein 219789..221012 Nitrobacter winogradskyi Nb-255 3676646 YP_316811.1 CDS Nwi_0191 NC_007406.1 221163 222323 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(221163..222323) Nitrobacter winogradskyi Nb-255 3676647 YP_316812.1 CDS Nwi_0192 NC_007406.1 222310 222945 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase complement(222310..222945) Nitrobacter winogradskyi Nb-255 3676648 YP_316813.1 CDS rph NC_007406.1 223063 223776 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(223063..223776) Nitrobacter winogradskyi Nb-255 3676649 YP_316814.1 CDS hrcA NC_007406.1 223971 225059 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 223971..225059 Nitrobacter winogradskyi Nb-255 3676650 YP_316815.1 CDS Nwi_0195 NC_007406.1 225153 225746 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 225153..225746 Nitrobacter winogradskyi Nb-255 3676651 YP_316816.1 CDS Nwi_0196 NC_007406.1 225812 226750 R hypothetical protein complement(225812..226750) Nitrobacter winogradskyi Nb-255 3676652 YP_316817.1 CDS dnaK NC_007406.1 227144 229036 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 227144..229036 Nitrobacter winogradskyi Nb-255 3676653 YP_316818.1 CDS Nwi_0198 NC_007406.1 229185 230321 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 229185..230321 Nitrobacter winogradskyi Nb-255 3676654 YP_316819.1 CDS Nwi_0199 NC_007406.1 230415 231017 D ribosomal RNA adenine methylase transferase 230415..231017 Nitrobacter winogradskyi Nb-255 3676655 YP_316820.1 CDS Nwi_0200 NC_007406.1 231103 231696 D NADPH-dependent FMN reductase 231103..231696 Nitrobacter winogradskyi Nb-255 3676656 YP_316821.1 CDS Nwi_0201 NC_007406.1 231747 232613 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 231747..232613 Nitrobacter winogradskyi Nb-255 3676657 YP_316822.1 CDS Nwi_0202 NC_007406.1 232780 233403 D catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 232780..233403 Nitrobacter winogradskyi Nb-255 3676658 YP_316823.1 CDS Nwi_0203 NC_007406.1 233410 234354 R methylated-DNA--protein-cysteine methyltransferase complement(233410..234354) Nitrobacter winogradskyi Nb-255 3676659 YP_316824.1 CDS Nwi_0204 NC_007406.1 234373 234897 R hypothetical protein complement(234373..234897) Nitrobacter winogradskyi Nb-255 3676660 YP_316825.1 CDS Nwi_0205 NC_007406.1 235058 235816 D endonuclease III/Nth 235058..235816 Nitrobacter winogradskyi Nb-255 3676661 YP_316826.1 CDS rpsA NC_007406.1 236083 237786 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(236083..237786) Nitrobacter winogradskyi Nb-255 3676662 YP_316827.1 CDS Nwi_0207 NC_007406.1 238140 238847 R methyltransferase FkbM complement(238140..238847) Nitrobacter winogradskyi Nb-255 3676663 YP_316828.1 CDS cmk NC_007406.1 238874 239512 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(238874..239512) Nitrobacter winogradskyi Nb-255 3676664 YP_316829.1 CDS Nwi_0209 NC_007406.1 239509 240858 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(239509..240858) Nitrobacter winogradskyi Nb-255 3676665 YP_316830.1 CDS Nwi_0210 NC_007406.1 241005 241418 D hypothetical protein 241005..241418 Nitrobacter winogradskyi Nb-255 3676666 YP_316831.1 CDS Nwi_0211 NC_007406.1 242018 242443 D heat shock protein Hsp20 242018..242443 Nitrobacter winogradskyi Nb-255 3676668 YP_316832.1 CDS Nwi_0212 NC_007406.1 242542 242808 D hypothetical protein 242542..242808 Nitrobacter winogradskyi Nb-255 3676669 YP_316833.1 CDS Nwi_0213 NC_007406.1 243124 244968 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 243124..244968 Nitrobacter winogradskyi Nb-255 3676670 YP_316834.1 CDS Nwi_0214 NC_007406.1 245200 245520 D transposase 245200..245520 Nitrobacter winogradskyi Nb-255 3676671 YP_316835.1 CDS Nwi_0215 NC_007406.1 245675 245902 D IS4 family transposase 245675..245902 Nitrobacter winogradskyi Nb-255 3676672 YP_316836.1 CDS Nwi_0216 NC_007406.1 245916 246959 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(245916..246959) Nitrobacter winogradskyi Nb-255 3676673 YP_316837.1 CDS Nwi_0217 NC_007406.1 247059 248660 R virulence factor MVIN-like complement(247059..248660) Nitrobacter winogradskyi Nb-255 3676674 YP_316838.1 CDS Nwi_0218 NC_007406.1 248739 249740 D PfkB protein 248739..249740 Nitrobacter winogradskyi Nb-255 3676675 YP_316839.1 CDS Nwi_0219 NC_007406.1 249826 250746 R pirin complement(249826..250746) Nitrobacter winogradskyi Nb-255 3676676 YP_316840.1 CDS Nwi_0220 NC_007406.1 250980 251510 R hypothetical protein complement(250980..251510) Nitrobacter winogradskyi Nb-255 3676677 YP_316841.1 CDS Nwi_0221 NC_007406.1 251695 253122 R C69 family peptidase complement(251695..253122) Nitrobacter winogradskyi Nb-255 3676678 YP_316842.1 CDS Nwi_0222 NC_007406.1 253282 253869 R invasion associated locus B complement(253282..253869) Nitrobacter winogradskyi Nb-255 3676679 YP_316843.1 CDS Nwi_0223 NC_007406.1 254299 255156 D cytochrome c oxidase subunit II 254299..255156 Nitrobacter winogradskyi Nb-255 3676680 YP_316844.1 CDS Nwi_0224 NC_007406.1 255257 256876 D cytochrome c oxidase subunit I 255257..256876 Nitrobacter winogradskyi Nb-255 3676681 YP_316845.1 CDS Nwi_0225 NC_007406.1 256939 257877 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 256939..257877 Nitrobacter winogradskyi Nb-255 3676682 YP_316846.1 CDS Nwi_0226 NC_007406.1 257894 258064 D CoxF protein 257894..258064 Nitrobacter winogradskyi Nb-255 3676683 YP_316847.1 CDS Nwi_0227 NC_007406.1 258071 258712 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 258071..258712 Nitrobacter winogradskyi Nb-255 3676684 YP_316848.1 CDS Nwi_0228 NC_007406.1 258809 259663 D cytochrome c oxidase subunit III 258809..259663 Nitrobacter winogradskyi Nb-255 3676685 YP_316849.1 CDS Nwi_0229 NC_007406.1 259851 261269 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 259851..261269 Nitrobacter winogradskyi Nb-255 3674679 YP_316850.1 CDS Nwi_0230 NC_007406.1 261266 262555 D peptidase M16 261266..262555 Nitrobacter winogradskyi Nb-255 3676114 YP_316851.1 CDS Nwi_0231 NC_007406.1 262732 263316 D N-acetyltransferase 262732..263316 Nitrobacter winogradskyi Nb-255 3676115 YP_316852.1 CDS Nwi_0232 NC_007406.1 263471 264112 R ISRm2011-2 transposase complement(263471..264112) Nitrobacter winogradskyi Nb-255 3676116 YP_316853.1 CDS Nwi_0233 NC_007406.1 264064 264414 R transposase complement(264064..264414) Nitrobacter winogradskyi Nb-255 3676117 YP_316854.1 CDS Nwi_0234 NC_007406.1 264612 265322 D hypothetical protein 264612..265322 Nitrobacter winogradskyi Nb-255 3676118 YP_316855.1 CDS Nwi_0235 NC_007406.1 265711 266196 R H+-transporting two-sector ATPase subunit B/B' complement(265711..266196) Nitrobacter winogradskyi Nb-255 3676119 YP_316856.1 CDS Nwi_0236 NC_007406.1 266205 266762 R H+-transporting two-sector ATPase subunit B/B' complement(266205..266762) Nitrobacter winogradskyi Nb-255 3676120 YP_316857.1 CDS Nwi_0237 NC_007406.1 266826 267053 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(266826..267053) Nitrobacter winogradskyi Nb-255 3676121 YP_316858.1 CDS Nwi_0238 NC_007406.1 267106 267849 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(267106..267849) Nitrobacter winogradskyi Nb-255 3676122 YP_316859.1 CDS Nwi_0239 NC_007406.1 267918 268301 R FoF1 ATP synthase subunit I complement(267918..268301) Nitrobacter winogradskyi Nb-255 3676123 YP_316860.1 CDS Nwi_0240 NC_007406.1 268849 269391 D hypothetical protein 268849..269391 Nitrobacter winogradskyi Nb-255 3676124 YP_316861.1 CDS Nwi_0241 NC_007406.1 269923 270573 D LuxR family transcriptional regulator 269923..270573 Nitrobacter winogradskyi Nb-255 3676125 YP_316862.1 CDS Nwi_0242 NC_007406.1 270746 271975 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(270746..271975) Nitrobacter winogradskyi Nb-255 3676126 YP_316863.1 CDS Nwi_0243 NC_007406.1 272227 273252 R biotin synthase complement(272227..273252) Nitrobacter winogradskyi Nb-255 3676127 YP_316864.1 CDS Nwi_0244 NC_007406.1 273509 274234 R outer membrane protein complement(273509..274234) Nitrobacter winogradskyi Nb-255 3676128 YP_316865.1 CDS Nwi_0245 NC_007406.1 274793 275038 D hypothetical protein 274793..275038 Nitrobacter winogradskyi Nb-255 3674151 YP_316866.1 CDS Nwi_0246 NC_007406.1 275304 276593 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 275304..276593 Nitrobacter winogradskyi Nb-255 3674152 YP_316867.1 CDS hisD NC_007406.1 276758 278092 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 276758..278092 Nitrobacter winogradskyi Nb-255 3674153 YP_316868.1 CDS Nwi_0248 NC_007406.1 278394 278897 D hypothetical protein 278394..278897 Nitrobacter winogradskyi Nb-255 3674154 YP_316869.1 CDS Nwi_0249 NC_007406.1 278940 279452 D low molecular weight phosphotyrosine protein phosphatase 278940..279452 Nitrobacter winogradskyi Nb-255 3674155 YP_316870.1 CDS Nwi_0251 NC_007406.1 280460 282085 D helicase 280460..282085 Nitrobacter winogradskyi Nb-255 3674157 YP_316871.1 CDS Nwi_0252 NC_007406.1 282177 282827 R LysR family transcriptional regulator complement(282177..282827) Nitrobacter winogradskyi Nb-255 3674158 YP_316872.1 CDS Nwi_0253 NC_007406.1 282940 283542 R ferric siderophore receptor protein complement(282940..283542) Nitrobacter winogradskyi Nb-255 3674159 YP_316873.1 CDS Nwi_0254 NC_007406.1 283688 286045 R Fis family transcriptional regulator complement(283688..286045) Nitrobacter winogradskyi Nb-255 3674160 YP_316874.1 CDS Nwi_0255 NC_007406.1 286133 287032 R antirestriction protein complement(286133..287032) Nitrobacter winogradskyi Nb-255 3674161 YP_316875.1 CDS Nwi_0256 NC_007406.1 287301 287795 D hypothetical protein 287301..287795 Nitrobacter winogradskyi Nb-255 3674162 YP_316876.1 CDS Nwi_0257 NC_007406.1 287999 289213 D hypothetical protein 287999..289213 Nitrobacter winogradskyi Nb-255 3674163 YP_316877.1 CDS Nwi_0258 NC_007406.1 289260 290468 R hypothetical protein complement(289260..290468) Nitrobacter winogradskyi Nb-255 3674164 YP_316878.1 CDS Nwi_0259 NC_007406.1 290585 291466 R hypothetical protein complement(290585..291466) Nitrobacter winogradskyi Nb-255 3674165 YP_316879.1 CDS Nwi_0260 NC_007406.1 291472 292905 R hypothetical protein complement(291472..292905) Nitrobacter winogradskyi Nb-255 3674166 YP_316880.1 CDS Nwi_0261 NC_007406.1 292902 293717 R hypothetical protein complement(292902..293717) Nitrobacter winogradskyi Nb-255 3674167 YP_316881.1 CDS Nwi_0262 NC_007406.1 293714 294514 R hypothetical protein complement(293714..294514) Nitrobacter winogradskyi Nb-255 3674168 YP_316882.1 CDS Nwi_0263 NC_007406.1 294625 295182 D hypothetical protein 294625..295182 Nitrobacter winogradskyi Nb-255 3674169 YP_316883.1 CDS Nwi_0264 NC_007406.1 295179 296537 D hypothetical protein 295179..296537 Nitrobacter winogradskyi Nb-255 3676169 YP_316884.1 CDS Nwi_0265 NC_007406.1 296516 297718 D XRE family transcriptional regulator 296516..297718 Nitrobacter winogradskyi Nb-255 3676170 YP_316885.1 CDS Nwi_0266 NC_007406.1 297693 298310 D hypothetical protein 297693..298310 Nitrobacter winogradskyi Nb-255 3676171 YP_316886.1 CDS Nwi_0267 NC_007406.1 298560 301178 R hypothetical protein complement(298560..301178) Nitrobacter winogradskyi Nb-255 3676172 YP_316887.1 CDS Nwi_0268 NC_007406.1 301186 302520 R restriction endonuclease S subunits complement(301186..302520) Nitrobacter winogradskyi Nb-255 3676173 YP_316888.1 CDS Nwi_0269 NC_007406.1 302517 304076 R N-6 DNA methylase complement(302517..304076) Nitrobacter winogradskyi Nb-255 3676174 YP_316889.1 CDS Nwi_0270 NC_007406.1 304063 306435 R DEAD/DEAH box helicase complement(304063..306435) Nitrobacter winogradskyi Nb-255 3676175 YP_316890.1 CDS Nwi_0271 NC_007406.1 306432 306851 R excisionase complement(306432..306851) Nitrobacter winogradskyi Nb-255 3676176 YP_316891.1 CDS Nwi_0272 NC_007406.1 307106 308380 R phage integrase complement(307106..308380) Nitrobacter winogradskyi Nb-255 3676177 YP_316892.1 CDS Nwi_0273 NC_007406.1 308686 308964 R hypothetical protein complement(308686..308964) Nitrobacter winogradskyi Nb-255 3676178 YP_316893.1 CDS Nwi_0274 NC_007406.1 309187 309432 D hypothetical protein 309187..309432 Nitrobacter winogradskyi Nb-255 3676179 YP_316894.1 CDS Nwi_0275 NC_007406.1 309446 310525 D phage integrase 309446..310525 Nitrobacter winogradskyi Nb-255 3676180 YP_316895.1 CDS Nwi_0276 NC_007406.1 310827 311024 R zinc-binding protein complement(310827..311024) Nitrobacter winogradskyi Nb-255 3676182 YP_316896.1 CDS maf NC_007406.1 310999 311622 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(310999..311622) Nitrobacter winogradskyi Nb-255 3676183 YP_316897.1 CDS Nwi_0278 NC_007406.1 311913 313109 D hypothetical protein 311913..313109 Nitrobacter winogradskyi Nb-255 3676184 YP_316898.1 CDS Nwi_0279 NC_007406.1 313329 314516 D thiolase 313329..314516 Nitrobacter winogradskyi Nb-255 3676185 YP_316899.1 CDS Nwi_0280 NC_007406.1 314644 315042 R hypothetical protein complement(314644..315042) Nitrobacter winogradskyi Nb-255 3676186 YP_316900.1 CDS Nwi_0281 NC_007406.1 315223 316782 D glycerol kinase 315223..316782 Nitrobacter winogradskyi Nb-255 3675018 YP_316901.1 CDS Nwi_0282 NC_007406.1 316829 317254 R transcriptional regulator complement(316829..317254) Nitrobacter winogradskyi Nb-255 3677110 YP_316902.1 CDS metH NC_007406.1 317257 321129 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(317257..321129) Nitrobacter winogradskyi Nb-255 3677111 YP_316903.1 CDS Nwi_0284 NC_007406.1 321190 322221 R 5,10-methylenetetrahydrofolate reductase complement(321190..322221) Nitrobacter winogradskyi Nb-255 3677112 YP_316904.1 CDS Nwi_0285 NC_007406.1 322432 323292 R catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(322432..323292) Nitrobacter winogradskyi Nb-255 3677113 YP_316905.1 CDS Nwi_0286 NC_007406.1 323304 324068 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(323304..324068) Nitrobacter winogradskyi Nb-255 3677114 YP_316906.1 CDS Nwi_0287 NC_007406.1 324262 324819 D cytochrome c, class I 324262..324819 Nitrobacter winogradskyi Nb-255 3677115 YP_316907.1 CDS Nwi_0288 NC_007406.1 325344 327239 D extracellular solute-binding protein 325344..327239 Nitrobacter winogradskyi Nb-255 3677116 YP_316908.1 CDS Nwi_0289 NC_007406.1 327254 329152 D extracellular solute-binding protein 327254..329152 Nitrobacter winogradskyi Nb-255 3677117 YP_316909.1 CDS Nwi_0290 NC_007406.1 329155 330264 D binding-protein dependent transport system inner membrane protein 329155..330264 Nitrobacter winogradskyi Nb-255 3677118 YP_316910.1 CDS Nwi_0291 NC_007406.1 330270 331442 D binding-protein dependent transport system inner membrane protein 330270..331442 Nitrobacter winogradskyi Nb-255 3677119 YP_316911.1 CDS Nwi_0292 NC_007406.1 331452 333089 D ABC transporter ATPase 331452..333089 Nitrobacter winogradskyi Nb-255 3677120 YP_316912.1 CDS Nwi_0293 NC_007406.1 333090 333935 R cell wall-associated hydrolase complement(333090..333935) Nitrobacter winogradskyi Nb-255 3677121 YP_316913.1 CDS Nwi_0294 NC_007406.1 333928 335316 R peptidase M17, leucyl aminopeptidase complement(333928..335316) Nitrobacter winogradskyi Nb-255 3677122 YP_316914.1 CDS Nwi_0295 NC_007406.1 335445 336317 D hypothetical protein 335445..336317 Nitrobacter winogradskyi Nb-255 3677123 YP_316915.1 CDS Nwi_0296 NC_007406.1 336475 337452 R type II secretion system protein complement(336475..337452) Nitrobacter winogradskyi Nb-255 3677124 YP_316916.1 CDS Nwi_0297 NC_007406.1 337465 338439 R type II secretion system protein complement(337465..338439) Nitrobacter winogradskyi Nb-255 3677125 YP_316917.1 CDS Nwi_0298 NC_007406.1 338452 339918 R type II secretion system protein E complement(338452..339918) Nitrobacter winogradskyi Nb-255 3677126 YP_316918.1 CDS Nwi_0299 NC_007406.1 340175 341440 R pilus assembly protein cpaE complement(340175..341440) Nitrobacter winogradskyi Nb-255 3677127 YP_316919.1 CDS Nwi_0300 NC_007406.1 341437 342177 R pilus assembly protein CpaD complement(341437..342177) Nitrobacter winogradskyi Nb-255 3677128 YP_316920.1 CDS Nwi_0301 NC_007406.1 342198 343679 R type II and III secretion system protein complement(342198..343679) Nitrobacter winogradskyi Nb-255 3676130 YP_316921.1 CDS Nwi_0302 NC_007406.1 343695 344522 R Flp pilus assembly CpaB complement(343695..344522) Nitrobacter winogradskyi Nb-255 3676131 YP_316922.1 CDS Nwi_0303 NC_007406.1 344602 345126 R peptidase A24A, prepilin type IV complement(344602..345126) Nitrobacter winogradskyi Nb-255 3676132 YP_316923.1 CDS Nwi_0304 NC_007406.1 345462 345629 R Flp/Fap pilin component complement(345462..345629) Nitrobacter winogradskyi Nb-255 3676133 YP_316924.1 CDS Nwi_0305 NC_007406.1 346034 346525 D hypothetical protein 346034..346525 Nitrobacter winogradskyi Nb-255 3676134 YP_316925.1 CDS Nwi_0306 NC_007406.1 346707 347267 D Flp pilus assembly protein TadG 346707..347267 Nitrobacter winogradskyi Nb-255 3676135 YP_316926.1 CDS Nwi_0307 NC_007406.1 347295 348023 D Flp pilus assembly protein TadG 347295..348023 Nitrobacter winogradskyi Nb-255 3676136 YP_316927.1 CDS Nwi_0308 NC_007406.1 348165 349115 R integrase catalytic subunit complement(348165..349115) Nitrobacter winogradskyi Nb-255 3676137 YP_316928.1 CDS Nwi_0309 NC_007406.1 349248 349613 D ISBm1, transposase orfA 349248..349613 Nitrobacter winogradskyi Nb-255 3676138 YP_316929.1 CDS Nwi_0310 NC_007406.1 349385 350017 D transposase, IS4 349385..350017 Nitrobacter winogradskyi Nb-255 3676139 YP_316930.1 CDS Nwi_0311 NC_007406.1 350232 350438 R cold-shock protein, DNA-binding complement(350232..350438) Nitrobacter winogradskyi Nb-255 3676140 YP_316931.1 CDS infA NC_007406.1 350696 350977 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(350696..350977) Nitrobacter winogradskyi Nb-255 3676141 YP_316932.1 CDS Nwi_0313 NC_007406.1 351118 351360 D hypothetical protein 351118..351360 Nitrobacter winogradskyi Nb-255 3676142 YP_316933.1 CDS Nwi_0314 NC_007406.1 351424 352854 R DEAD/DEAH box helicase complement(351424..352854) Nitrobacter winogradskyi Nb-255 3676143 YP_316934.1 CDS Nwi_0315 NC_007406.1 353099 353893 R pseudouridine synthase complement(353099..353893) Nitrobacter winogradskyi Nb-255 3676144 YP_316935.1 CDS Nwi_0316 NC_007406.1 353924 354871 D cell division transporter substrate-binding protein FtsY 353924..354871 Nitrobacter winogradskyi Nb-255 3676145 YP_316936.2 CDS Nwi_0317 NC_007406.1 354982 355584 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 354982..355584 Nitrobacter winogradskyi Nb-255 3676146 YP_316937.1 CDS Nwi_0318 NC_007406.1 355631 356224 R periplasmic protein thiol-disulfide oxidoreductase DsbE complement(355631..356224) Nitrobacter winogradskyi Nb-255 3676147 YP_316938.1 CDS Nwi_0319 NC_007406.1 356221 356400 R Heme exporter protein CcmD complement(356221..356400) Nitrobacter winogradskyi Nb-255 3676148 YP_316939.1 CDS Nwi_0320 NC_007406.1 356406 357137 R cytochrome c-type biogenesis protein CcmC complement(356406..357137) Nitrobacter winogradskyi Nb-255 3676149 YP_316940.1 CDS Nwi_0321 NC_007406.1 357233 357901 R cytochrome c-type biogenesis protein CcmB complement(357233..357901) Nitrobacter winogradskyi Nb-255 3676150 YP_316941.1 CDS Nwi_0322 NC_007406.1 357975 358577 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(357975..358577) Nitrobacter winogradskyi Nb-255 3676151 YP_316942.1 CDS Nwi_0323 NC_007406.1 358803 361520 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 358803..361520 Nitrobacter winogradskyi Nb-255 3676152 YP_316943.1 CDS Nwi_0324 NC_007406.1 361704 362540 D hypothetical protein 361704..362540 Nitrobacter winogradskyi Nb-255 3676153 YP_316944.1 CDS Nwi_0325 NC_007406.1 362968 363339 D hypothetical protein 362968..363339 Nitrobacter winogradskyi Nb-255 3676154 YP_316945.1 CDS Nwi_0326 NC_007406.1 363439 364506 R group 1 glycosyl transferase complement(363439..364506) Nitrobacter winogradskyi Nb-255 3676155 YP_316946.1 CDS Nwi_0327 NC_007406.1 364797 366560 D ABC transporter 364797..366560 Nitrobacter winogradskyi Nb-255 3676156 YP_316947.1 CDS Nwi_0328 NC_007406.1 366628 368829 D amylo-alpha-1,6-glucosidase 366628..368829 Nitrobacter winogradskyi Nb-255 3676157 YP_316948.1 CDS Nwi_0329 NC_007406.1 369511 371535 R carbohydrate-selective porin OprB complement(369511..371535) Nitrobacter winogradskyi Nb-255 3676158 YP_316949.1 CDS Nwi_0330 NC_007406.1 371764 372582 R creatininase complement(371764..372582) Nitrobacter winogradskyi Nb-255 3676159 YP_316950.1 CDS Nwi_0331 NC_007406.1 372722 373756 D perplasmic binding protein of ABC transporter 372722..373756 Nitrobacter winogradskyi Nb-255 3676160 YP_316951.1 CDS Nwi_0332 NC_007406.1 373772 374575 D ABC transporter ATPase 373772..374575 Nitrobacter winogradskyi Nb-255 3676161 YP_316952.1 CDS Nwi_0333 NC_007406.1 374572 375408 D binding-protein dependent transport system inner membrane protein 374572..375408 Nitrobacter winogradskyi Nb-255 3676162 YP_316953.1 CDS Nwi_0334 NC_007406.1 375405 376145 D hypothetical protein 375405..376145 Nitrobacter winogradskyi Nb-255 3676163 YP_316954.1 CDS radC NC_007406.1 376215 376925 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(376215..376925) Nitrobacter winogradskyi Nb-255 3676164 YP_316955.1 CDS Nwi_0336 NC_007406.1 377225 378040 R peptidase M24A complement(377225..378040) Nitrobacter winogradskyi Nb-255 3676165 YP_316956.1 CDS Nwi_0337 NC_007406.1 378252 380045 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 378252..380045 Nitrobacter winogradskyi Nb-255 3676166 YP_316957.1 CDS Nwi_0338 NC_007406.1 380066 380731 R molybdate ABC transporter ATP-binding protein complement(380066..380731) Nitrobacter winogradskyi Nb-255 3676167 YP_316958.1 CDS modB NC_007406.1 380734 381495 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease complement(380734..381495) Nitrobacter winogradskyi Nb-255 3676168 YP_316959.1 CDS Nwi_0340 NC_007406.1 381599 382423 R molybdenum ABC transporter substrate-binding protein complement(381599..382423) Nitrobacter winogradskyi Nb-255 3674894 YP_316960.1 CDS mepA NC_007406.1 382614 383666 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(382614..383666) Nitrobacter winogradskyi Nb-255 3674895 YP_316961.1 CDS Nwi_0342 NC_007406.1 383703 384041 R hypothetical protein complement(383703..384041) Nitrobacter winogradskyi Nb-255 3674896 YP_316962.1 CDS Nwi_0343 NC_007406.1 384138 385949 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(384138..385949) Nitrobacter winogradskyi Nb-255 3674897 YP_316963.1 CDS Nwi_0344 NC_007406.1 386045 386374 R phosphoryl transfer system, HPr complement(386045..386374) Nitrobacter winogradskyi Nb-255 3674898 YP_316964.1 CDS Nwi_0345 NC_007406.1 386371 386772 R PTS system fructose subfamily transporter subunit IIA complement(386371..386772) Nitrobacter winogradskyi Nb-255 3674899 YP_316965.1 CDS Nwi_0346 NC_007406.1 386925 387434 R hypothetical protein complement(386925..387434) Nitrobacter winogradskyi Nb-255 3674900 YP_316966.1 CDS Nwi_0347 NC_007406.1 387431 389266 R Signal transduction histidine kinase complement(387431..389266) Nitrobacter winogradskyi Nb-255 3674901 YP_316967.1 CDS Nwi_0348 NC_007406.1 389429 390130 R transcriptional regulator complement(389429..390130) Nitrobacter winogradskyi Nb-255 3674902 YP_316968.1 CDS Nwi_0349 NC_007406.1 390352 391089 D pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 390352..391089 Nitrobacter winogradskyi Nb-255 3674903 YP_316969.1 CDS Nwi_0350 NC_007406.1 391235 392851 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 391235..392851 Nitrobacter winogradskyi Nb-255 3674904 YP_316970.1 CDS Nwi_0351 NC_007406.1 392871 393761 D beta-lactamase 392871..393761 Nitrobacter winogradskyi Nb-255 3674905 YP_316971.1 CDS Nwi_0352 NC_007406.1 393742 394737 R arginase complement(393742..394737) Nitrobacter winogradskyi Nb-255 3674906 YP_316972.1 CDS ligD NC_007406.1 394743 397484 R catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(394743..397484) Nitrobacter winogradskyi Nb-255 3674907 YP_316973.1 CDS Nwi_0354 NC_007406.1 397534 397719 R hypothetical protein complement(397534..397719) Nitrobacter winogradskyi Nb-255 3674908 YP_316974.1 CDS Nwi_0355 NC_007406.1 397732 398715 R hypothetical protein complement(397732..398715) Nitrobacter winogradskyi Nb-255 3674909 YP_316975.1 CDS Nwi_0356 NC_007406.1 398861 399472 R lysine exporter protein LysE/YggA complement(398861..399472) Nitrobacter winogradskyi Nb-255 3674910 YP_316976.1 CDS Nwi_0357 NC_007406.1 399513 402545 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(399513..402545) Nitrobacter winogradskyi Nb-255 3674911 YP_316977.1 CDS Nwi_0358 NC_007406.1 402648 403760 R acyltransferase complement(402648..403760) Nitrobacter winogradskyi Nb-255 3674912 YP_316978.1 CDS Nwi_0359 NC_007406.1 403840 406458 D ATP-dependent helicase HrpB 403840..406458 Nitrobacter winogradskyi Nb-255 3674913 YP_316979.1 CDS Nwi_0360 NC_007406.1 406806 407333 D hypothetical protein 406806..407333 Nitrobacter winogradskyi Nb-255 3674914 YP_316980.1 CDS Nwi_0361 NC_007406.1 407589 409088 D phosphoglucomutase/phosphomannomutase 407589..409088 Nitrobacter winogradskyi Nb-255 3674915 YP_316981.1 CDS Nwi_0362 NC_007406.1 409135 409644 R asnC family transcriptional regulator complement(409135..409644) Nitrobacter winogradskyi Nb-255 3674916 YP_316982.1 CDS Nwi_0363 NC_007406.1 409866 410507 R ISRm2011-2 transposase complement(409866..410507) Nitrobacter winogradskyi Nb-255 3674917 YP_316983.1 CDS Nwi_0364 NC_007406.1 410459 410809 R transposase complement(410459..410809) Nitrobacter winogradskyi Nb-255 3674918 YP_316984.1 CDS Nwi_0365 NC_007406.1 411072 411437 D ISBm1, transposase orfA 411072..411437 Nitrobacter winogradskyi Nb-255 3674919 YP_316985.1 CDS Nwi_0366 NC_007406.1 411800 412789 R integrase catalytic subunit complement(411800..412789) Nitrobacter winogradskyi Nb-255 3674920 YP_316986.1 CDS recR NC_007406.1 412847 413452 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(412847..413452) Nitrobacter winogradskyi Nb-255 3674921 YP_316987.1 CDS Nwi_0368 NC_007406.1 413603 413923 R hypothetical protein complement(413603..413923) Nitrobacter winogradskyi Nb-255 3674922 YP_316988.1 CDS Nwi_0369 NC_007406.1 414108 415943 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(414108..415943) Nitrobacter winogradskyi Nb-255 3674923 YP_316989.1 CDS Nwi_0370 NC_007406.1 416308 416724 D histidine triad (HIT) protein 416308..416724 Nitrobacter winogradskyi Nb-255 3674925 YP_316990.1 CDS Nwi_0371 NC_007406.1 416882 417133 R hypothetical protein complement(416882..417133) Nitrobacter winogradskyi Nb-255 3674926 YP_316991.1 CDS Nwi_0372 NC_007406.1 417304 417711 R hypothetical protein complement(417304..417711) Nitrobacter winogradskyi Nb-255 3674415 YP_316992.1 CDS Nwi_0373 NC_007406.1 417727 418494 R beta-lactamase-like protein complement(417727..418494) Nitrobacter winogradskyi Nb-255 3676958 YP_316993.1 CDS Nwi_0374 NC_007406.1 418825 419565 D hypothetical protein 418825..419565 Nitrobacter winogradskyi Nb-255 3676959 YP_316994.1 CDS Nwi_0375 NC_007406.1 419607 420302 R hypothetical protein complement(419607..420302) Nitrobacter winogradskyi Nb-255 3676960 YP_316995.1 CDS Nwi_0376 NC_007406.1 420976 421872 R modification methylase HemK complement(420976..421872) Nitrobacter winogradskyi Nb-255 3676961 YP_316996.1 CDS prfA NC_007406.1 421944 423020 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(421944..423020) Nitrobacter winogradskyi Nb-255 3676962 YP_316997.1 CDS Nwi_0378 NC_007406.1 423105 425372 R phosphoenolpyruvate-protein phosphotransferase complement(423105..425372) Nitrobacter winogradskyi Nb-255 3676963 YP_316998.1 CDS Nwi_0379 NC_007406.1 425768 427021 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(425768..427021) Nitrobacter winogradskyi Nb-255 3676964 YP_316999.1 CDS Nwi_0380 NC_007406.1 427081 427398 D hypothetical protein 427081..427398 Nitrobacter winogradskyi Nb-255 3676965 YP_317000.1 CDS Nwi_0381 NC_007406.1 427444 428229 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 427444..428229 Nitrobacter winogradskyi Nb-255 3676966 YP_317001.1 CDS Nwi_0382 NC_007406.1 428259 428702 R hypothetical protein complement(428259..428702) Nitrobacter winogradskyi Nb-255 3676967 YP_317002.1 CDS Nwi_0383 NC_007406.1 428699 428944 R hypothetical protein complement(428699..428944) Nitrobacter winogradskyi Nb-255 3676968 YP_317003.1 CDS Nwi_0384 NC_007406.1 428941 429843 R nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(428941..429843) Nitrobacter winogradskyi Nb-255 3676969 YP_317004.1 CDS Nwi_0385 NC_007406.1 429875 430690 R phosphoribosyltransferase complement(429875..430690) Nitrobacter winogradskyi Nb-255 3676970 YP_317005.1 CDS Nwi_0386 NC_007406.1 430779 431648 D methyltransferase 430779..431648 Nitrobacter winogradskyi Nb-255 3676971 YP_317006.1 CDS Nwi_0387 NC_007406.1 431778 432167 R NUDIX hydrolase complement(431778..432167) Nitrobacter winogradskyi Nb-255 3676972 YP_317007.1 CDS argJ NC_007406.1 432176 433429 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithineacetyltransferase/N-acetylglutamate synthase complement(432176..433429) Nitrobacter winogradskyi Nb-255 3676973 YP_317008.1 CDS Nwi_0389 NC_007406.1 433517 434422 R PpiC-type peptidyl-prolyl cis-trans isomerase complement(433517..434422) Nitrobacter winogradskyi Nb-255 3676974 YP_317009.1 CDS Nwi_0390 NC_007406.1 435057 437918 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 435057..437918 Nitrobacter winogradskyi Nb-255 3676975 YP_317010.1 CDS Nwi_0391 NC_007406.1 438142 439620 R hypothetical protein complement(438142..439620) Nitrobacter winogradskyi Nb-255 3676976 YP_317011.1 CDS Nwi_0392 NC_007406.1 439944 440906 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(439944..440906) Nitrobacter winogradskyi Nb-255 3676977 YP_317012.1 CDS Nwi_0393 NC_007406.1 441142 442101 R tyrosine recombinase XerD complement(441142..442101) Nitrobacter winogradskyi Nb-255 3676978 YP_317013.1 CDS Nwi_0394 NC_007406.1 442217 442363 R hypothetical protein complement(442217..442363) Nitrobacter winogradskyi Nb-255 3676979 YP_317014.1 CDS Nwi_0395 NC_007406.1 442655 443299 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 442655..443299 Nitrobacter winogradskyi Nb-255 3676980 YP_317015.1 CDS aroB NC_007406.1 443296 444447 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 443296..444447 Nitrobacter winogradskyi Nb-255 3676981 YP_317016.1 CDS Nwi_0397 NC_007406.1 444451 445800 D Mg2+ and Co2+ transporter CorB family 444451..445800 Nitrobacter winogradskyi Nb-255 3676982 YP_317017.1 CDS Nwi_0398 NC_007406.1 445929 446246 R hypothetical protein complement(445929..446246) Nitrobacter winogradskyi Nb-255 3676983 YP_317018.1 CDS Nwi_0399 NC_007406.1 446250 447383 R hypothetical protein complement(446250..447383) Nitrobacter winogradskyi Nb-255 3676984 YP_317019.1 CDS Nwi_0400 NC_007406.1 447662 447937 R BolA-like protein complement(447662..447937) Nitrobacter winogradskyi Nb-255 3676985 YP_317020.1 CDS Nwi_0401 NC_007406.1 447999 448697 D molecular chaperone DnaJ 447999..448697 Nitrobacter winogradskyi Nb-255 3676986 YP_317021.1 CDS Nwi_0402 NC_007406.1 448737 449060 R hypothetical protein complement(448737..449060) Nitrobacter winogradskyi Nb-255 3676987 YP_317022.1 CDS Nwi_0403 NC_007406.1 449482 450480 D cobalt chelatase small subunit 449482..450480 Nitrobacter winogradskyi Nb-255 3676988 YP_317023.1 CDS Nwi_0404 NC_007406.1 450614 452521 D cobalt chelatase subunit CobT 450614..452521 Nitrobacter winogradskyi Nb-255 3676989 YP_317024.1 CDS Nwi_0405 NC_007406.1 452602 453672 D hypothetical protein 452602..453672 Nitrobacter winogradskyi Nb-255 3676990 YP_317025.1 CDS rpmB NC_007406.1 453944 454237 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(453944..454237) Nitrobacter winogradskyi Nb-255 3676991 YP_317026.1 CDS Nwi_0407 NC_007406.1 454546 455415 D hypothetical protein 454546..455415 Nitrobacter winogradskyi Nb-255 3676992 YP_317027.1 CDS Nwi_0408 NC_007406.1 455482 455796 R hypothetical protein complement(455482..455796) Nitrobacter winogradskyi Nb-255 3676993 YP_317028.1 CDS Nwi_0409 NC_007406.1 455942 459316 D helicase 455942..459316 Nitrobacter winogradskyi Nb-255 3676994 YP_317029.1 CDS Nwi_0410 NC_007406.1 459432 459725 D RNA-binding protein S4 459432..459725 Nitrobacter winogradskyi Nb-255 3676995 YP_317030.1 CDS Nwi_0411 NC_007406.1 459938 460276 D 4Fe-4S ferredoxin 459938..460276 Nitrobacter winogradskyi Nb-255 3676996 YP_317031.1 CDS Nwi_0412 NC_007406.1 460680 461531 D transcription factor CarD 460680..461531 Nitrobacter winogradskyi Nb-255 3676997 YP_317032.1 CDS Nwi_0413 NC_007406.1 462543 463334 R hypothetical protein complement(462543..463334) Nitrobacter winogradskyi Nb-255 3676998 YP_317033.1 CDS Nwi_0414 NC_007406.1 463631 466186 R hypothetical protein complement(463631..466186) Nitrobacter winogradskyi Nb-255 3676999 YP_317034.1 CDS Nwi_0415 NC_007406.1 466263 466985 R ABC transporter ATPase complement(466263..466985) Nitrobacter winogradskyi Nb-255 3677000 YP_317035.1 CDS Nwi_0416 NC_007406.1 467056 467811 D lysophospholipase L1 and related esterase 467056..467811 Nitrobacter winogradskyi Nb-255 3677003 YP_317036.1 CDS Nwi_0417 NC_007406.1 467986 468522 D 2'-5' RNA ligase 467986..468522 Nitrobacter winogradskyi Nb-255 3677004 YP_317037.1 CDS Nwi_0418 NC_007406.1 468593 469777 D AFG1-like ATPase 468593..469777 Nitrobacter winogradskyi Nb-255 3677005 YP_317038.1 CDS Nwi_0419 NC_007406.1 469971 470939 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 469971..470939 Nitrobacter winogradskyi Nb-255 3677006 YP_317039.1 CDS sucC NC_007406.1 471095 472294 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 471095..472294 Nitrobacter winogradskyi Nb-255 3677007 YP_317040.1 CDS Nwi_0421 NC_007406.1 472294 473178 D succinyl-CoA ligase subunit alpha 472294..473178 Nitrobacter winogradskyi Nb-255 3677008 YP_317041.1 CDS sucA NC_007406.1 473328 476285 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 473328..476285 Nitrobacter winogradskyi Nb-255 3675058 YP_317042.1 CDS Nwi_0423 NC_007406.1 476388 477662 D component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 476388..477662 Nitrobacter winogradskyi Nb-255 3676597 YP_317043.1 CDS Nwi_0424 NC_007406.1 477809 478309 D hypothetical protein 477809..478309 Nitrobacter winogradskyi Nb-255 3676598 YP_317044.1 CDS Nwi_0425 NC_007406.1 478320 479723 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 478320..479723 Nitrobacter winogradskyi Nb-255 3676599 YP_317045.1 CDS xerC NC_007406.1 479866 480831 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(479866..480831) Nitrobacter winogradskyi Nb-255 3676600 YP_317046.1 CDS Nwi_0427 NC_007406.1 480969 483185 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 480969..483185 Nitrobacter winogradskyi Nb-255 3676601 YP_317047.1 CDS Nwi_0428 NC_007406.1 483277 483783 R rare lipoprotein A complement(483277..483783) Nitrobacter winogradskyi Nb-255 3676602 YP_317048.2 CDS Nwi_0429 NC_007406.1 484429 484989 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta 484429..484989 Nitrobacter winogradskyi Nb-255 3676603 YP_317049.1 CDS Nwi_0430 NC_007406.1 484989 486521 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 484989..486521 Nitrobacter winogradskyi Nb-255 3676604 YP_317050.1 CDS Nwi_0431 NC_007406.1 486652 487530 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma 486652..487530 Nitrobacter winogradskyi Nb-255 3676605 YP_317051.1 CDS Nwi_0432 NC_007406.1 487548 487952 D OsmC-like protein 487548..487952 Nitrobacter winogradskyi Nb-255 3676606 YP_317052.1 CDS Nwi_0433 NC_007406.1 487981 489411 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 487981..489411 Nitrobacter winogradskyi Nb-255 3676607 YP_317053.1 CDS atpC NC_007406.1 489516 489923 D produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit epsilon 489516..489923 Nitrobacter winogradskyi Nb-255 3676608 YP_317054.1 CDS Nwi_0435 NC_007406.1 489937 490467 R transposase, IS4 complement(489937..490467) Nitrobacter winogradskyi Nb-255 3676609 YP_317055.1 CDS Nwi_0436 NC_007406.1 491004 491744 D hypothetical protein 491004..491744 Nitrobacter winogradskyi Nb-255 3676610 YP_317056.1 CDS Nwi_0437 NC_007406.1 491726 493513 D hypothetical protein 491726..493513 Nitrobacter winogradskyi Nb-255 3676611 YP_317057.1 CDS Nwi_0438 NC_007406.1 494699 495826 R hypothetical protein complement(494699..495826) Nitrobacter winogradskyi Nb-255 3676613 YP_317058.1 CDS rplU NC_007406.1 496243 496683 D 50S ribosomal protein L21 496243..496683 Nitrobacter winogradskyi Nb-255 3676614 YP_317059.1 CDS rpmA NC_007406.1 496769 497041 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 496769..497041 Nitrobacter winogradskyi Nb-255 3676615 YP_317060.1 CDS Nwi_0441 NC_007406.1 497178 497786 D N-acetyltransferase 497178..497786 Nitrobacter winogradskyi Nb-255 3676616 YP_317061.1 CDS obgE NC_007406.1 498050 499126 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 498050..499126 Nitrobacter winogradskyi Nb-255 3676617 YP_317062.1 CDS Nwi_0443 NC_007406.1 499266 500405 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 499266..500405 Nitrobacter winogradskyi Nb-255 3676618 YP_317063.1 CDS proA NC_007406.1 500732 502024 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 500732..502024 Nitrobacter winogradskyi Nb-255 3676619 YP_317064.1 CDS nadD NC_007406.1 502064 502696 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 502064..502696 Nitrobacter winogradskyi Nb-255 3676620 YP_317065.1 CDS Nwi_0446 NC_007406.1 502912 503283 D Iojap-related protein 502912..503283 Nitrobacter winogradskyi Nb-255 3676621 YP_317066.1 CDS Nwi_0447 NC_007406.1 503329 503811 D SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 503329..503811 Nitrobacter winogradskyi Nb-255 3676622 YP_317067.1 CDS Nwi_0448 NC_007406.1 503906 505258 D peptidase M23B 503906..505258 Nitrobacter winogradskyi Nb-255 3676623 YP_317068.1 CDS Nwi_0449 NC_007406.1 505255 506610 D peptidase S41A 505255..506610 Nitrobacter winogradskyi Nb-255 3676624 YP_317069.1 CDS Nwi_0450 NC_007406.1 506762 507964 D hypothetical protein 506762..507964 Nitrobacter winogradskyi Nb-255 3676625 YP_317070.1 CDS Nwi_0451 NC_007406.1 508093 508605 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 508093..508605 Nitrobacter winogradskyi Nb-255 3676626 YP_317071.1 CDS Nwi_0452 NC_007406.1 508789 510279 R peptidase M48, Ste24p complement(508789..510279) Nitrobacter winogradskyi Nb-255 3676693 YP_317072.1 CDS Nwi_0453 NC_007406.1 510544 511323 R nuclease complement(510544..511323) Nitrobacter winogradskyi Nb-255 3676694 YP_317073.1 CDS Nwi_0454 NC_007406.1 511399 511671 R hypothetical protein complement(511399..511671) Nitrobacter winogradskyi Nb-255 3676695 YP_317074.1 CDS Nwi_0455 NC_007406.1 511866 512444 R hypothetical protein complement(511866..512444) Nitrobacter winogradskyi Nb-255 3676696 YP_317075.1 CDS Nwi_0456 NC_007406.1 512813 513670 R binding-protein dependent transport system inner membrane protein complement(512813..513670) Nitrobacter winogradskyi Nb-255 3676698 YP_317076.1 CDS Nwi_0457 NC_007406.1 513667 514869 R nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein complement(513667..514869) Nitrobacter winogradskyi Nb-255 3676699 YP_317077.1 CDS Nwi_0458 NC_007406.1 514925 515737 R ABC transporter ATPase complement(514925..515737) Nitrobacter winogradskyi Nb-255 3676700 YP_317078.1 CDS Nwi_0459 NC_007406.1 515734 516837 R hypothetical protein complement(515734..516837) Nitrobacter winogradskyi Nb-255 3676701 YP_317079.1 CDS Nwi_0460 NC_007406.1 516855 517427 R carboxymuconolactone decarboxylase complement(516855..517427) Nitrobacter winogradskyi Nb-255 3676702 YP_317080.1 CDS Nwi_0461 NC_007406.1 517624 518796 D hypothetical protein 517624..518796 Nitrobacter winogradskyi Nb-255 3676296 YP_317081.1 CDS Nwi_0462 NC_007406.1 518793 520577 D catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 518793..520577 Nitrobacter winogradskyi Nb-255 3676297 YP_317082.1 CDS Nwi_0463 NC_007406.1 520653 520958 D hypothetical protein 520653..520958 Nitrobacter winogradskyi Nb-255 3676298 YP_317083.1 CDS Nwi_0464 NC_007406.1 521079 522173 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(521079..522173) Nitrobacter winogradskyi Nb-255 3676299 YP_317084.1 CDS Nwi_0465 NC_007406.1 522170 522514 R hypothetical protein complement(522170..522514) Nitrobacter winogradskyi Nb-255 3674866 YP_317085.1 CDS Nwi_0466 NC_007406.1 522734 523366 D peptidase S24 522734..523366 Nitrobacter winogradskyi Nb-255 3674867 YP_317086.1 CDS Nwi_0467 NC_007406.1 523436 525394 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(523436..525394) Nitrobacter winogradskyi Nb-255 3674868 YP_317087.1 CDS Nwi_0468 NC_007406.1 525555 525968 R hypothetical protein complement(525555..525968) Nitrobacter winogradskyi Nb-255 3674869 YP_317088.1 CDS gpsA NC_007406.1 525971 526951 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(525971..526951) Nitrobacter winogradskyi Nb-255 3676501 YP_317089.1 CDS Nwi_0470 NC_007406.1 526966 528039 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(526966..528039) Nitrobacter winogradskyi Nb-255 3676502 YP_317090.1 CDS hemC NC_007406.1 528130 529080 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 528130..529080 Nitrobacter winogradskyi Nb-255 3676503 YP_317091.1 CDS Nwi_0472 NC_007406.1 529085 529831 D uroporphyrinogen III synthase HEM4 529085..529831 Nitrobacter winogradskyi Nb-255 3676504 YP_317092.1 CDS Nwi_0473 NC_007406.1 529921 531411 D hypothetical protein 529921..531411 Nitrobacter winogradskyi Nb-255 3676505 YP_317093.1 CDS Nwi_0474 NC_007406.1 531419 533086 D HemY protein 531419..533086 Nitrobacter winogradskyi Nb-255 3676506 YP_317094.1 CDS Nwi_0475 NC_007406.1 533381 533611 D hypothetical protein 533381..533611 Nitrobacter winogradskyi Nb-255 3676508 YP_317095.1 CDS Nwi_0476 NC_007406.1 533742 534221 D hypothetical protein 533742..534221 Nitrobacter winogradskyi Nb-255 3676509 YP_317096.1 CDS Nwi_0477 NC_007406.1 534468 535238 D short-chain dehydrogenase/reductase SDR 534468..535238 Nitrobacter winogradskyi Nb-255 3676510 YP_317097.1 CDS Nwi_0478 NC_007406.1 536100 536390 D hypothetical protein 536100..536390 Nitrobacter winogradskyi Nb-255 3676512 YP_317098.1 CDS Nwi_0479 NC_007406.1 536402 536722 D hypothetical protein 536402..536722 Nitrobacter winogradskyi Nb-255 3676513 YP_317099.1 CDS Nwi_0480 NC_007406.1 536741 537625 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 536741..537625 Nitrobacter winogradskyi Nb-255 3676514 YP_317100.1 CDS Nwi_0481 NC_007406.1 537860 538810 D integrase catalytic subunit 537860..538810 Nitrobacter winogradskyi Nb-255 3676515 YP_317101.1 CDS Nwi_0482 NC_007406.1 539004 539354 D transposase 539004..539354 Nitrobacter winogradskyi Nb-255 3676516 YP_317102.1 CDS Nwi_0483 NC_007406.1 539306 539947 D ISRm2011-2 transposase 539306..539947 Nitrobacter winogradskyi Nb-255 3676517 YP_317103.1 CDS Nwi_0484 NC_007406.1 539960 540490 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(539960..540490) Nitrobacter winogradskyi Nb-255 3676518 YP_317104.1 CDS Nwi_0485 NC_007406.1 540766 541317 R N-acetyltransferase complement(540766..541317) Nitrobacter winogradskyi Nb-255 3676519 YP_317105.1 CDS Nwi_0486 NC_007406.1 541358 541675 D hypothetical protein 541358..541675 Nitrobacter winogradskyi Nb-255 3676520 YP_317106.1 CDS Nwi_0487 NC_007406.1 541660 542433 R short chain dehydrogenase complement(541660..542433) Nitrobacter winogradskyi Nb-255 3676521 YP_317107.1 CDS Nwi_0488 NC_007406.1 542539 543468 D LysR family transcriptional regulator 542539..543468 Nitrobacter winogradskyi Nb-255 3676522 YP_317108.1 CDS Nwi_0489 NC_007406.1 543648 545018 R amine oxidase complement(543648..545018) Nitrobacter winogradskyi Nb-255 3676523 YP_317109.1 CDS Nwi_0490 NC_007406.1 545147 547813 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(545147..547813) Nitrobacter winogradskyi Nb-255 3676524 YP_317110.1 CDS Nwi_0491 NC_007406.1 548030 548896 R ubiquinone/menaquinone biosynthesis methylase complement(548030..548896) Nitrobacter winogradskyi Nb-255 3676525 YP_317111.1 CDS Nwi_0492 NC_007406.1 548965 549825 D alpha/beta hydrolase 548965..549825 Nitrobacter winogradskyi Nb-255 3676526 YP_317112.1 CDS Nwi_0493 NC_007406.1 550148 550681 D ferric-uptake regulator 550148..550681 Nitrobacter winogradskyi Nb-255 3676527 YP_317113.1 CDS ispG NC_007406.1 550968 552260 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 550968..552260 Nitrobacter winogradskyi Nb-255 3676528 YP_317114.1 CDS Nwi_0495 NC_007406.1 552574 553500 R polyprenyl synthetase complement(552574..553500) Nitrobacter winogradskyi Nb-255 3674768 YP_317115.1 CDS mtgA NC_007406.1 553729 554409 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 553729..554409 Nitrobacter winogradskyi Nb-255 3675497 YP_317116.1 CDS rpmF NC_007406.1 554512 554697 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 554512..554697 Nitrobacter winogradskyi Nb-255 3675498 YP_317117.1 CDS Nwi_0498 NC_007406.1 554819 555466 D hypothetical protein 554819..555466 Nitrobacter winogradskyi Nb-255 3675499 YP_317118.1 CDS Nwi_0499 NC_007406.1 555479 555853 R hypothetical protein complement(555479..555853) Nitrobacter winogradskyi Nb-255 3675500 YP_317119.1 CDS Nwi_0500 NC_007406.1 555994 557772 D diguanylate cyclase/phophodiesterase 555994..557772 Nitrobacter winogradskyi Nb-255 3675501 YP_317120.1 CDS Nwi_0501 NC_007406.1 557865 558923 R polysaccharide deacetylase complement(557865..558923) Nitrobacter winogradskyi Nb-255 3675502 YP_317121.1 CDS Nwi_0502 NC_007406.1 559187 560578 D OmpA/MotB protein 559187..560578 Nitrobacter winogradskyi Nb-255 3675503 YP_317122.1 CDS Nwi_0503 NC_007406.1 560583 560909 D hypothetical protein 560583..560909 Nitrobacter winogradskyi Nb-255 3675504 YP_317123.1 CDS Nwi_0504 NC_007406.1 561036 562091 D hypothetical protein 561036..562091 Nitrobacter winogradskyi Nb-255 3675505 YP_317124.1 CDS Nwi_0505 NC_007406.1 562171 563424 D Signal transduction histidine kinase 562171..563424 Nitrobacter winogradskyi Nb-255 3675506 YP_317125.1 CDS Nwi_0506 NC_007406.1 563549 564574 D phosphate binding protein 563549..564574 Nitrobacter winogradskyi Nb-255 3675507 YP_317126.1 CDS Nwi_0507 NC_007406.1 564646 565671 D phosphate ABC transporter permease 564646..565671 Nitrobacter winogradskyi Nb-255 3675508 YP_317127.1 CDS Nwi_0508 NC_007406.1 565754 566599 D phosphate ABC transporter permease 565754..566599 Nitrobacter winogradskyi Nb-255 3675509 YP_317128.1 CDS pstB NC_007406.1 566596 567417 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 566596..567417 Nitrobacter winogradskyi Nb-255 3675510 YP_317129.1 CDS Nwi_0510 NC_007406.1 567451 568167 D hypothetical protein 567451..568167 Nitrobacter winogradskyi Nb-255 3675511 YP_317130.1 CDS Nwi_0511 NC_007406.1 568189 568893 D phosphate regulon transcriptional regulatory protein PhoB 568189..568893 Nitrobacter winogradskyi Nb-255 3675512 YP_317131.1 CDS Nwi_0512 NC_007406.1 569145 569651 R GcrA cell cycle regulator complement(569145..569651) Nitrobacter winogradskyi Nb-255 3675513 YP_317132.2 CDS argD NC_007406.1 570129 571340 D DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase 570129..571340 Nitrobacter winogradskyi Nb-255 3675514 YP_317133.1 CDS Nwi_0514 NC_007406.1 571337 572263 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 571337..572263 Nitrobacter winogradskyi Nb-255 3675515 YP_317134.1 CDS Nwi_0515 NC_007406.1 572490 573746 R hypothetical protein complement(572490..573746) Nitrobacter winogradskyi Nb-255 3675516 YP_317135.1 CDS Nwi_0516 NC_007406.1 573914 574558 R hypothetical protein complement(573914..574558) Nitrobacter winogradskyi Nb-255 3675517 YP_317136.1 CDS Nwi_0517 NC_007406.1 574699 575205 D hypothetical protein 574699..575205 Nitrobacter winogradskyi Nb-255 3675518 YP_317137.1 CDS Nwi_0518 NC_007406.1 575303 576121 R inositol monophosphatase complement(575303..576121) Nitrobacter winogradskyi Nb-255 3675519 YP_317138.1 CDS Nwi_0519 NC_007406.1 576272 576919 D hypothetical protein 576272..576919 Nitrobacter winogradskyi Nb-255 3675520 YP_317139.1 CDS Nwi_0520 NC_007406.1 577168 579834 D CheA kinase 577168..579834 Nitrobacter winogradskyi Nb-255 3675521 YP_317140.1 CDS Nwi_0521 NC_007406.1 579846 580316 D chemotaxis protein CheW 579846..580316 Nitrobacter winogradskyi Nb-255 3675522 YP_317141.1 CDS Nwi_0522 NC_007406.1 580376 580741 D chemotaxis protein CheY 580376..580741 Nitrobacter winogradskyi Nb-255 3675523 YP_317142.1 CDS Nwi_0523 NC_007406.1 580784 582061 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 580784..582061 Nitrobacter winogradskyi Nb-255 3675524 YP_317143.1 CDS Nwi_0524 NC_007406.1 582058 582924 D chemotaxis protein CheR 582058..582924 Nitrobacter winogradskyi Nb-255 3675525 YP_317144.1 CDS Nwi_0525 NC_007406.1 583135 583836 R transcriptional regulator complement(583135..583836) Nitrobacter winogradskyi Nb-255 3675526 YP_317145.1 CDS fliI NC_007406.1 584205 585530 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 584205..585530 Nitrobacter winogradskyi Nb-255 3675527 YP_317146.1 CDS Nwi_0527 NC_007406.1 585635 586060 D hypothetical protein 585635..586060 Nitrobacter winogradskyi Nb-255 3675528 YP_317147.1 CDS Nwi_0528 NC_007406.1 586293 586493 R hypothetical protein complement(586293..586493) Nitrobacter winogradskyi Nb-255 3675529 YP_317148.1 CDS flhA NC_007406.1 586816 588945 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(586816..588945) Nitrobacter winogradskyi Nb-255 3675530 YP_317149.1 CDS Nwi_0530 NC_007406.1 589867 591576 D methyl-accepting chemotaxis protein 589867..591576 Nitrobacter winogradskyi Nb-255 3675532 YP_317150.1 CDS Nwi_0531 NC_007406.1 592343 592738 D hypothetical protein 592343..592738 Nitrobacter winogradskyi Nb-255 3674845 YP_317151.1 CDS Nwi_0532 NC_007406.1 592798 593502 R cobyrinic acid a,c-diamide synthase complement(592798..593502) Nitrobacter winogradskyi Nb-255 3674846 YP_317152.1 CDS Nwi_0533 NC_007406.1 593906 594985 D hemolysin-type calcium-binding region 593906..594985 Nitrobacter winogradskyi Nb-255 3674132 YP_317153.1 CDS Nwi_0534 NC_007406.1 595282 595908 D hypothetical protein 595282..595908 Nitrobacter winogradskyi Nb-255 3676942 YP_317154.1 CDS Nwi_0535 NC_007406.1 596417 598651 D ABC transporter 596417..598651 Nitrobacter winogradskyi Nb-255 3676943 YP_317155.1 CDS Nwi_0536 NC_007406.1 598641 599987 D type I secretion membrane fusion protein, HlyD 598641..599987 Nitrobacter winogradskyi Nb-255 3676944 YP_317156.1 CDS Nwi_0537 NC_007406.1 599987 602029 D Sel1 repeat-containing protein 599987..602029 Nitrobacter winogradskyi Nb-255 3676945 YP_317157.1 CDS Nwi_0538 NC_007406.1 602193 604397 D lipopolysaccharide biosynthesis protein 602193..604397 Nitrobacter winogradskyi Nb-255 3676946 YP_317158.1 CDS Nwi_0539 NC_007406.1 604413 605336 D glycosyl transferase family protein 604413..605336 Nitrobacter winogradskyi Nb-255 3676947 YP_317159.1 CDS Nwi_0540 NC_007406.1 605461 606606 R hypothetical protein complement(605461..606606) Nitrobacter winogradskyi Nb-255 3675717 YP_317160.1 CDS Nwi_0541 NC_007406.1 606862 608112 D glycosyl transferase family protein 606862..608112 Nitrobacter winogradskyi Nb-255 3675718 YP_317161.1 CDS Nwi_0542 NC_007406.1 608338 608988 R hypothetical protein complement(608338..608988) Nitrobacter winogradskyi Nb-255 3676886 YP_317162.1 CDS Nwi_0543 NC_007406.1 608966 610267 R UDP-glucose/GDP-mannose dehydrogenase complement(608966..610267) Nitrobacter winogradskyi Nb-255 3676887 YP_317163.1 CDS Nwi_0544 NC_007406.1 610326 611393 R dTDP-glucose 4,6-dehydratase complement(610326..611393) Nitrobacter winogradskyi Nb-255 3676888 YP_317164.1 CDS Nwi_0545 NC_007406.1 611419 612294 R glucose-1-phosphate thymidylyltransferase complement(611419..612294) Nitrobacter winogradskyi Nb-255 3676889 YP_317165.1 CDS Nwi_0546 NC_007406.1 612357 612953 D dTDP-4-dehydrorhamnose 3 5-epimerase-like protein 612357..612953 Nitrobacter winogradskyi Nb-255 3676890 YP_317166.1 CDS Nwi_0547 NC_007406.1 612965 613891 D dTDP-4-dehydrorhamnose reductase 612965..613891 Nitrobacter winogradskyi Nb-255 3676891 YP_317167.1 CDS Nwi_0548 NC_007406.1 613960 616314 R glycosyl transferase family protein complement(613960..616314) Nitrobacter winogradskyi Nb-255 3676892 YP_317168.1 CDS Nwi_0549 NC_007406.1 616317 618773 R glycosyl transferase family protein complement(616317..618773) Nitrobacter winogradskyi Nb-255 3676893 YP_317169.1 CDS Nwi_0550 NC_007406.1 618860 619735 R hypothetical protein complement(618860..619735) Nitrobacter winogradskyi Nb-255 3676894 YP_317170.1 CDS Nwi_0551 NC_007406.1 620013 620243 R hypothetical protein complement(620013..620243) Nitrobacter winogradskyi Nb-255 3676895 YP_317171.1 CDS Nwi_0552 NC_007406.1 620528 621895 D group 1 glycosyl transferase 620528..621895 Nitrobacter winogradskyi Nb-255 3676896 YP_317172.1 CDS Nwi_0553 NC_007406.1 621990 622733 R HAD family hydrolase complement(621990..622733) Nitrobacter winogradskyi Nb-255 3676897 YP_317173.1 CDS Nwi_0554 NC_007406.1 622840 624684 R small GTP-binding protein complement(622840..624684) Nitrobacter winogradskyi Nb-255 3676898 YP_317174.1 CDS Nwi_0555 NC_007406.1 625010 625768 R transcriptional regulator complement(625010..625768) Nitrobacter winogradskyi Nb-255 3676899 YP_317175.1 CDS Nwi_0556 NC_007406.1 625905 626327 D response regulator receiver 625905..626327 Nitrobacter winogradskyi Nb-255 3676900 YP_317176.1 CDS Nwi_0557 NC_007406.1 626435 627643 D protein NnrS 626435..627643 Nitrobacter winogradskyi Nb-255 3676901 YP_317177.1 CDS Nwi_0558 NC_007406.1 627710 627964 R hypothetical protein complement(627710..627964) Nitrobacter winogradskyi Nb-255 3676902 YP_317178.1 CDS Nwi_0559 NC_007406.1 628099 629112 R HWE histidine kinase complement(628099..629112) Nitrobacter winogradskyi Nb-255 3676948 YP_317179.1 CDS Nwi_0560 NC_007406.1 629371 630198 D cyclic nucleotide-binding protein 629371..630198 Nitrobacter winogradskyi Nb-255 3676949 YP_317180.1 CDS Nwi_0561 NC_007406.1 630195 631079 D hypothetical protein 630195..631079 Nitrobacter winogradskyi Nb-255 3676950 YP_317181.1 CDS Nwi_0562 NC_007406.1 631446 631856 D hypothetical protein 631446..631856 Nitrobacter winogradskyi Nb-255 3676951 YP_317182.1 CDS Nwi_0563 NC_007406.1 632022 632417 D hypothetical protein 632022..632417 Nitrobacter winogradskyi Nb-255 3676952 YP_317183.1 CDS Nwi_0564 NC_007406.1 632436 633167 R hypothetical protein complement(632436..633167) Nitrobacter winogradskyi Nb-255 3676953 YP_317184.1 CDS Nwi_0565 NC_007406.1 633258 633827 D marR family transcriptional regulator 633258..633827 Nitrobacter winogradskyi Nb-255 3676954 YP_317185.1 CDS Nwi_0566 NC_007406.1 633851 635137 R hypothetical protein complement(633851..635137) Nitrobacter winogradskyi Nb-255 3676955 YP_317186.1 CDS Nwi_0567 NC_007406.1 635408 637486 R peptidase M23B complement(635408..637486) Nitrobacter winogradskyi Nb-255 3676956 YP_317187.1 CDS Nwi_0568 NC_007406.1 643874 644470 D hypothetical protein 643874..644470 Nitrobacter winogradskyi Nb-255 3677213 YP_317188.1 CDS Nwi_0569 NC_007406.1 644552 644857 R hypothetical protein complement(644552..644857) Nitrobacter winogradskyi Nb-255 3677214 YP_317189.1 CDS Nwi_0570 NC_007406.1 644871 646391 D FAD-dependent pyridine nucleotide-disulfide oxidoreductase 644871..646391 Nitrobacter winogradskyi Nb-255 3677215 YP_317190.1 CDS Nwi_0571 NC_007406.1 646661 646966 D methylated-DNA-protein-cystein methyltransferase 646661..646966 Nitrobacter winogradskyi Nb-255 3677216 YP_317191.1 CDS Nwi_0572 NC_007406.1 646926 647153 D methylated-DNA--protein-cysteine methyltransferase 646926..647153 Nitrobacter winogradskyi Nb-255 3677217 YP_317192.1 CDS Nwi_0573 NC_007406.1 647374 649860 D hypothetical protein 647374..649860 Nitrobacter winogradskyi Nb-255 3677218 YP_317193.1 CDS Nwi_0574 NC_007406.1 649847 650239 R response regulator receiver complement(649847..650239) Nitrobacter winogradskyi Nb-255 3677219 YP_317194.1 CDS Nwi_0575 NC_007406.1 650243 651100 R hypothetical protein complement(650243..651100) Nitrobacter winogradskyi Nb-255 3677220 YP_317195.1 CDS Nwi_0576 NC_007406.1 651254 651913 D ABC transporter ATPase 651254..651913 Nitrobacter winogradskyi Nb-255 3677221 YP_317196.1 CDS Nwi_0577 NC_007406.1 651933 652877 D hypothetical protein 651933..652877 Nitrobacter winogradskyi Nb-255 3677222 YP_317197.1 CDS Nwi_0578 NC_007406.1 652971 653696 D hypothetical protein 652971..653696 Nitrobacter winogradskyi Nb-255 3677223 YP_317198.1 CDS Nwi_0579 NC_007406.1 653775 654554 D phospholipid/glycerol acyltransferase 653775..654554 Nitrobacter winogradskyi Nb-255 3677224 YP_317199.1 CDS Nwi_0580 NC_007406.1 654680 655264 R ChaC-like protein complement(654680..655264) Nitrobacter winogradskyi Nb-255 3677225 YP_317200.1 CDS Nwi_0581 NC_007406.1 655447 656691 D hypothetical protein 655447..656691 Nitrobacter winogradskyi Nb-255 3677226 YP_317201.1 CDS Nwi_0582 NC_007406.1 656856 657791 R dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase complement(656856..657791) Nitrobacter winogradskyi Nb-255 3677227 YP_317202.1 CDS Nwi_0583 NC_007406.1 657788 658885 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(657788..658885) Nitrobacter winogradskyi Nb-255 3677228 YP_317203.1 CDS Nwi_0584 NC_007406.1 658922 659776 R hypothetical protein complement(658922..659776) Nitrobacter winogradskyi Nb-255 3677229 YP_317204.1 CDS metX NC_007406.1 660098 661297 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 660098..661297 Nitrobacter winogradskyi Nb-255 3677230 YP_317205.1 CDS Nwi_0586 NC_007406.1 661299 661988 D methionine biosynthesis MetW 661299..661988 Nitrobacter winogradskyi Nb-255 3677231 YP_317206.1 CDS Nwi_0587 NC_007406.1 662316 662942 D hypothetical protein 662316..662942 Nitrobacter winogradskyi Nb-255 3677232 YP_317207.1 CDS Nwi_0588 NC_007406.1 663011 663787 R hypothetical protein complement(663011..663787) Nitrobacter winogradskyi Nb-255 3676255 YP_317208.1 CDS Nwi_0589 NC_007406.1 663965 666640 D ATPase AAA 663965..666640 Nitrobacter winogradskyi Nb-255 3676256 YP_317209.1 CDS Nwi_0590 NC_007406.1 666952 668793 D sulfite reductase (NADPH) flavoprotein subunit alpha 666952..668793 Nitrobacter winogradskyi Nb-255 3676257 YP_317210.1 CDS Nwi_0591 NC_007406.1 668804 670534 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 668804..670534 Nitrobacter winogradskyi Nb-255 3676258 YP_317211.1 CDS Nwi_0592 NC_007406.1 670769 671953 D O-succinylhomoserine (thiol)-lyase 670769..671953 Nitrobacter winogradskyi Nb-255 3676259 YP_317212.1 CDS Nwi_0593 NC_007406.1 672184 672567 R hypothetical protein complement(672184..672567) Nitrobacter winogradskyi Nb-255 3676260 YP_317213.1 CDS Nwi_0594 NC_007406.1 672891 674000 R exodeoxyribonuclease V complement(672891..674000) Nitrobacter winogradskyi Nb-255 3676261 YP_317214.1 CDS Nwi_0595 NC_007406.1 674113 675492 R Fis family transcriptional regulator complement(674113..675492) Nitrobacter winogradskyi Nb-255 3676262 YP_317215.1 CDS Nwi_0596 NC_007406.1 675535 675885 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(675535..675885) Nitrobacter winogradskyi Nb-255 3676263 YP_317216.1 CDS fliH NC_007406.1 675875 676528 R binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H complement(675875..676528) Nitrobacter winogradskyi Nb-255 3676264 YP_317217.1 CDS fliG NC_007406.1 676528 677619 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(676528..677619) Nitrobacter winogradskyi Nb-255 3676265 YP_317218.1 CDS fliF NC_007406.1 677626 679251 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(677626..679251) Nitrobacter winogradskyi Nb-255 3676266 YP_317219.1 CDS Nwi_0600 NC_007406.1 679422 679697 R hypothetical protein complement(679422..679697) Nitrobacter winogradskyi Nb-255 3676267 YP_317220.1 CDS Nwi_0601 NC_007406.1 679882 680574 R flagellar hook capping protein complement(679882..680574) Nitrobacter winogradskyi Nb-255 3676268 YP_317221.1 CDS Nwi_0602 NC_007406.1 680585 682171 R flagellar hook-length control protein complement(680585..682171) Nitrobacter winogradskyi Nb-255 3676269 YP_317222.1 CDS mnmA NC_007406.1 682417 683619 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 682417..683619 Nitrobacter winogradskyi Nb-255 3676270 YP_317223.1 CDS Nwi_0604 NC_007406.1 683642 684280 D UbiE/COQ5 methyltransferase 683642..684280 Nitrobacter winogradskyi Nb-255 3676271 YP_317224.1 CDS Nwi_0605 NC_007406.1 684455 684670 D hypothetical protein 684455..684670 Nitrobacter winogradskyi Nb-255 3676272 YP_317225.1 CDS Nwi_0606 NC_007406.1 684948 686672 D TrkA-N, Sodium/hydrogen exchanger 684948..686672 Nitrobacter winogradskyi Nb-255 3676035 YP_317226.1 CDS Nwi_0607 NC_007406.1 686812 687888 D 3,4-dihydroxy-2-butanone 4-phosphate synthase 686812..687888 Nitrobacter winogradskyi Nb-255 3676036 YP_317227.1 CDS Nwi_0608 NC_007406.1 687977 689191 D acyl-CoA dehydrogenase 687977..689191 Nitrobacter winogradskyi Nb-255 3676037 YP_317228.1 CDS Nwi_0609 NC_007406.1 689410 689640 D hypothetical protein 689410..689640 Nitrobacter winogradskyi Nb-255 3676038 YP_317229.1 CDS Nwi_0610 NC_007406.1 689695 690669 D hypothetical protein 689695..690669 Nitrobacter winogradskyi Nb-255 3676039 YP_317230.1 CDS Nwi_0611 NC_007406.1 690674 692395 D ABC transporter 690674..692395 Nitrobacter winogradskyi Nb-255 3676040 YP_317231.1 CDS Nwi_0612 NC_007406.1 692368 692622 R hypothetical protein complement(692368..692622) Nitrobacter winogradskyi Nb-255 3676041 YP_317232.1 CDS Nwi_0613 NC_007406.1 692826 693743 D beta-lactamase-like protein 692826..693743 Nitrobacter winogradskyi Nb-255 3676042 YP_317233.1 CDS Nwi_0614 NC_007406.1 693747 694700 R hypothetical protein complement(693747..694700) Nitrobacter winogradskyi Nb-255 3676043 YP_317234.1 CDS Nwi_0615 NC_007406.1 694718 695656 R LysR family transcriptional regulator complement(694718..695656) Nitrobacter winogradskyi Nb-255 3676044 YP_317235.1 CDS Nwi_0616 NC_007406.1 695774 696655 D pirin 695774..696655 Nitrobacter winogradskyi Nb-255 3676045 YP_317236.1 CDS Nwi_0617 NC_007406.1 696880 698484 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(696880..698484) Nitrobacter winogradskyi Nb-255 3676046 YP_317237.1 CDS Nwi_0618 NC_007406.1 698789 699670 D extensin 698789..699670 Nitrobacter winogradskyi Nb-255 3676047 YP_317238.1 CDS Nwi_0619 NC_007406.1 699874 700539 R ErfK/YbiS/YcfS/YnhG protein complement(699874..700539) Nitrobacter winogradskyi Nb-255 3676048 YP_317239.1 CDS Nwi_0620 NC_007406.1 700598 700852 D hypothetical protein 700598..700852 Nitrobacter winogradskyi Nb-255 3676049 YP_317240.1 CDS Nwi_0621 NC_007406.1 701521 702312 R short-chain dehydrogenase complement(701521..702312) Nitrobacter winogradskyi Nb-255 3676050 YP_317241.1 CDS Nwi_0622 NC_007406.1 702309 702950 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(702309..702950) Nitrobacter winogradskyi Nb-255 3676051 YP_317242.1 CDS Nwi_0623 NC_007406.1 703085 703471 D hypothetical protein 703085..703471 Nitrobacter winogradskyi Nb-255 3676052 YP_317243.1 CDS Nwi_0624 NC_007406.1 703592 704542 D molecular chaperone DnaJ 703592..704542 Nitrobacter winogradskyi Nb-255 3676237 YP_317244.1 CDS Nwi_0625 NC_007406.1 704704 704910 R hypothetical protein complement(704704..704910) Nitrobacter winogradskyi Nb-255 3676238 YP_317245.1 CDS Nwi_0626 NC_007406.1 705105 705737 R autoinducer synthesis protein complement(705105..705737) Nitrobacter winogradskyi Nb-255 3676239 YP_317246.1 CDS Nwi_0627 NC_007406.1 705818 706543 R LuxR family transcriptional regulator complement(705818..706543) Nitrobacter winogradskyi Nb-255 3676240 YP_317247.1 CDS Nwi_0628 NC_007406.1 707141 707734 D phosphoglycerate/bisphosphoglycerate mutase 707141..707734 Nitrobacter winogradskyi Nb-255 3676241 YP_317248.2 CDS Nwi_0629 NC_007406.1 707876 708982 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 707876..708982 Nitrobacter winogradskyi Nb-255 3676242 YP_317249.1 CDS clpS NC_007406.1 709095 709400 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor complement(709095..709400) Nitrobacter winogradskyi Nb-255 3676243 YP_317250.1 CDS Nwi_0631 NC_007406.1 709531 710799 R RNA methyltransferase complement(709531..710799) Nitrobacter winogradskyi Nb-255 3676244 YP_317251.1 CDS Nwi_0632 NC_007406.1 710792 711547 R hemolysin A complement(710792..711547) Nitrobacter winogradskyi Nb-255 3676245 YP_317252.1 CDS Nwi_0633 NC_007406.1 711876 713876 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(711876..713876) Nitrobacter winogradskyi Nb-255 3676246 YP_317253.1 CDS Nwi_0634 NC_007406.1 714272 714523 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(714272..714523) Nitrobacter winogradskyi Nb-255 3676247 YP_317254.1 CDS Nwi_0635 NC_007406.1 714621 715550 R histone deacetylase superfamily protein complement(714621..715550) Nitrobacter winogradskyi Nb-255 3676248 YP_317255.1 CDS Nwi_0636 NC_007406.1 715632 716399 R enoyl-CoA hydratase complement(715632..716399) Nitrobacter winogradskyi Nb-255 3676249 YP_317256.1 CDS Nwi_0637 NC_007406.1 716730 718508 R acyl-CoA dehydrogenase complement(716730..718508) Nitrobacter winogradskyi Nb-255 3676250 YP_317257.1 CDS Nwi_0638 NC_007406.1 718905 719186 D hypothetical protein 718905..719186 Nitrobacter winogradskyi Nb-255 3676252 YP_317258.1 CDS Nwi_0639 NC_007406.1 719448 719822 D transposase IS3/IS911 719448..719822 Nitrobacter winogradskyi Nb-255 3676253 YP_317259.1 CDS Nwi_0640 NC_007406.1 719819 720799 D Fis family transcriptional regulator 719819..720799 Nitrobacter winogradskyi Nb-255 3676254 YP_317260.1 CDS Nwi_0641 NC_007406.1 721125 722804 R hypothetical protein complement(721125..722804) Nitrobacter winogradskyi Nb-255 3676217 YP_317261.1 CDS Nwi_0642 NC_007406.1 722973 724130 R DegT/DnrJ/EryC1/StrS aminotransferase complement(722973..724130) Nitrobacter winogradskyi Nb-255 3676218 YP_317262.1 CDS Nwi_0643 NC_007406.1 724127 725128 R short-chain dehydrogenase complement(724127..725128) Nitrobacter winogradskyi Nb-255 3676219 YP_317263.1 CDS Nwi_0645 NC_007406.1 726120 726845 R acylneuraminate cytidylyltransferase complement(726120..726845) Nitrobacter winogradskyi Nb-255 3676221 YP_317264.1 CDS Nwi_0646 NC_007406.1 727128 727748 R hypothetical protein complement(727128..727748) Nitrobacter winogradskyi Nb-255 3676222 YP_317265.1 CDS Nwi_0647 NC_007406.1 727843 728895 R antifreeze-like protein complement(727843..728895) Nitrobacter winogradskyi Nb-255 3676223 YP_317266.1 CDS Nwi_0648 NC_007406.1 729064 729849 R NUDIX hydrolase complement(729064..729849) Nitrobacter winogradskyi Nb-255 3676224 YP_317267.1 CDS Nwi_0649 NC_007406.1 729843 730505 R HAD family hydrolase complement(729843..730505) Nitrobacter winogradskyi Nb-255 3676225 YP_317268.1 CDS Nwi_0650 NC_007406.1 730505 731323 R hypothetical protein complement(730505..731323) Nitrobacter winogradskyi Nb-255 3676226 YP_317269.1 CDS Nwi_0651 NC_007406.1 731492 732193 R hypothetical protein complement(731492..732193) Nitrobacter winogradskyi Nb-255 3676227 YP_317270.1 CDS Nwi_0652 NC_007406.1 732334 732639 D hypothetical protein 732334..732639 Nitrobacter winogradskyi Nb-255 3676228 YP_317271.1 CDS Nwi_0653 NC_007406.1 732820 734415 D beta-lactamase 732820..734415 Nitrobacter winogradskyi Nb-255 3676229 YP_317272.1 CDS Nwi_0654 NC_007406.1 734618 735259 R ISRm2011-2 transposase complement(734618..735259) Nitrobacter winogradskyi Nb-255 3676230 YP_317273.1 CDS Nwi_0655 NC_007406.1 735211 735561 R transposase complement(735211..735561) Nitrobacter winogradskyi Nb-255 3676231 YP_317274.1 CDS Nwi_0656 NC_007406.1 736051 736506 D sigma-70 region 2 736051..736506 Nitrobacter winogradskyi Nb-255 3676232 YP_317275.1 CDS Nwi_0657 NC_007406.1 736647 737660 D FecR protein 736647..737660 Nitrobacter winogradskyi Nb-255 3676233 YP_317276.1 CDS Nwi_0658 NC_007406.1 737772 739295 D secretin/TonB 737772..739295 Nitrobacter winogradskyi Nb-255 3676234 YP_317277.1 CDS Nwi_0659 NC_007406.1 739349 739723 D transposase IS3/IS911 739349..739723 Nitrobacter winogradskyi Nb-255 3676235 YP_317278.1 CDS Nwi_0660 NC_007406.1 739720 740700 D Fis family transcriptional regulator 739720..740700 Nitrobacter winogradskyi Nb-255 3676236 YP_317279.1 CDS Nwi_0661 NC_007406.1 740713 741852 D TonB-dependent receptor 740713..741852 Nitrobacter winogradskyi Nb-255 3674985 YP_317280.1 CDS Nwi_0662 NC_007406.1 742325 743104 D XRE family transcriptional regulator 742325..743104 Nitrobacter winogradskyi Nb-255 3674986 YP_317281.1 CDS Nwi_0663 NC_007406.1 743125 743559 D hypothetical protein 743125..743559 Nitrobacter winogradskyi Nb-255 3674987 YP_317282.1 CDS Nwi_0664 NC_007406.1 743747 745285 R porin complement(743747..745285) Nitrobacter winogradskyi Nb-255 3674988 YP_317283.1 CDS Nwi_0665 NC_007406.1 746258 747151 D branched chain amino acid ABC transporter permease 746258..747151 Nitrobacter winogradskyi Nb-255 3674989 YP_317284.1 CDS Nwi_0666 NC_007406.1 747148 748197 D branched-chain amino acid ABC transporter permease 747148..748197 Nitrobacter winogradskyi Nb-255 3674990 YP_317285.1 CDS Nwi_0667 NC_007406.1 748223 749494 D branched-chain amino acid ABC transporter substrate-binding protein 748223..749494 Nitrobacter winogradskyi Nb-255 3674991 YP_317286.1 CDS Nwi_0668 NC_007406.1 749491 750309 D branched-chain amino acid ABC transporter ATPase 749491..750309 Nitrobacter winogradskyi Nb-255 3674992 YP_317287.1 CDS Nwi_0669 NC_007406.1 750309 751013 D branched-chain amino acid ABC transporter ATPase 750309..751013 Nitrobacter winogradskyi Nb-255 3674993 YP_317288.1 CDS Nwi_0670 NC_007406.1 751218 751835 R cytochrome c553 complement(751218..751835) Nitrobacter winogradskyi Nb-255 3674994 YP_317289.1 CDS Nwi_0671 NC_007406.1 751935 752774 R nitrate/sulfonate/bicarbonate ABC transporter ATPase complement(751935..752774) Nitrobacter winogradskyi Nb-255 3674995 YP_317290.1 CDS Nwi_0672 NC_007406.1 752771 753451 R hypothetical protein complement(752771..753451) Nitrobacter winogradskyi Nb-255 3674996 YP_317291.1 CDS Nwi_0673 NC_007406.1 753448 754275 R binding-protein dependent transport system inner membrane protein complement(753448..754275) Nitrobacter winogradskyi Nb-255 3674997 YP_317292.1 CDS Nwi_0674 NC_007406.1 754312 755736 R sulfonate/nitrate ABC transporter substrate-binding protein complement(754312..755736) Nitrobacter winogradskyi Nb-255 3674998 YP_317293.1 CDS Nwi_0675 NC_007406.1 756106 756828 D cyclic nucleotide-binding protein 756106..756828 Nitrobacter winogradskyi Nb-255 3674999 YP_317294.1 CDS Nwi_0676 NC_007406.1 756829 757791 R PBS lyase complement(756829..757791) Nitrobacter winogradskyi Nb-255 3675000 YP_317295.1 CDS Nwi_0677 NC_007406.1 757793 758026 R 4Fe-4S ferredoxin complement(757793..758026) Nitrobacter winogradskyi Nb-255 3675001 YP_317296.1 CDS Nwi_0678 NC_007406.1 758037 759773 R oxidoreductase complement(758037..759773) Nitrobacter winogradskyi Nb-255 3675002 YP_317297.1 CDS Nwi_0679 NC_007406.1 759787 760080 R hypothetical protein complement(759787..760080) Nitrobacter winogradskyi Nb-255 3675003 YP_317298.1 CDS Nwi_0680 NC_007406.1 760620 761339 D nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein 760620..761339 Nitrobacter winogradskyi Nb-255 3676903 YP_317299.1 CDS Nwi_0681 NC_007406.1 761314 761568 D sulfonate/nitrate transport system substrate-binding protein 761314..761568 Nitrobacter winogradskyi Nb-255 3676904 YP_317300.1 CDS Nwi_0682 NC_007406.1 761565 762755 D catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 761565..762755 Nitrobacter winogradskyi Nb-255 3676905 YP_317301.1 CDS Nwi_0683 NC_007406.1 762752 763558 D binding-protein dependent transport system inner membrane protein 762752..763558 Nitrobacter winogradskyi Nb-255 3676906 YP_317302.1 CDS Nwi_0684 NC_007406.1 763738 764193 D ABC transporter ATPase 763738..764193 Nitrobacter winogradskyi Nb-255 3676907 YP_317303.1 CDS Nwi_0685 NC_007406.1 764177 764443 D aliphatic sulfonate ABC transporter ATP-binding protein 764177..764443 Nitrobacter winogradskyi Nb-255 3676908 YP_317304.1 CDS Nwi_0686 NC_007406.1 764480 765061 D flavin reductase-like, FMN-binding 764480..765061 Nitrobacter winogradskyi Nb-255 3676909 YP_317305.1 CDS Nwi_0687 NC_007406.1 765730 767709 D hypothetical protein 765730..767709 Nitrobacter winogradskyi Nb-255 3676910 YP_317306.1 CDS Nwi_0688 NC_007406.1 767721 768200 D 3-demethylubiquinone-9 3-methyltransferase 767721..768200 Nitrobacter winogradskyi Nb-255 3676911 YP_317307.1 CDS Nwi_0689 NC_007406.1 768213 769382 R pyrroloquinoline quinone biosynthesis protein PqqE complement(768213..769382) Nitrobacter winogradskyi Nb-255 3676912 YP_317308.1 CDS Nwi_0690 NC_007406.1 769379 769681 R coenzyme PQQ biosynthesis protein PqqD complement(769379..769681) Nitrobacter winogradskyi Nb-255 3676913 YP_317309.1 CDS Nwi_0691 NC_007406.1 769650 770501 R Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC complement(769650..770501) Nitrobacter winogradskyi Nb-255 3676914 YP_317310.1 CDS Nwi_0692 NC_007406.1 770446 771345 R possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB complement(770446..771345) Nitrobacter winogradskyi Nb-255 3676915 YP_317311.1 CDS Nwi_0693 NC_007406.1 771724 772848 R hypothetical protein complement(771724..772848) Nitrobacter winogradskyi Nb-255 3676916 YP_317312.1 CDS Nwi_0694 NC_007406.1 773194 774594 D cytochrome c Hsc 773194..774594 Nitrobacter winogradskyi Nb-255 3676917 YP_317313.1 CDS Nwi_0695 NC_007406.1 774803 775906 D group 1 glycosyl transferase 774803..775906 Nitrobacter winogradskyi Nb-255 3676918 YP_317314.1 CDS Nwi_0696 NC_007406.1 775937 776626 D UbiE/COQ5 methyltransferase 775937..776626 Nitrobacter winogradskyi Nb-255 3676919 YP_317315.1 CDS Nwi_0697 NC_007406.1 776874 777500 D hypothetical protein 776874..777500 Nitrobacter winogradskyi Nb-255 3676920 YP_317316.1 CDS Nwi_0698 NC_007406.1 777526 779190 R class III aminotransferase complement(777526..779190) Nitrobacter winogradskyi Nb-255 3676921 YP_317317.1 CDS Nwi_0699 NC_007406.1 779231 780124 D phosphatidylserine decarboxylase 779231..780124 Nitrobacter winogradskyi Nb-255 3676922 YP_317318.1 CDS Nwi_0700 NC_007406.1 780447 782804 D TonB-dependent receptor 780447..782804 Nitrobacter winogradskyi Nb-255 3674946 YP_317319.1 CDS Nwi_0701 NC_007406.1 783183 783863 D hydroxylase 783183..783863 Nitrobacter winogradskyi Nb-255 3674947 YP_317320.1 CDS Nwi_0702 NC_007406.1 784074 785183 D FMN-dependent alpha-hydroxy acid dehydrogenase 784074..785183 Nitrobacter winogradskyi Nb-255 3674948 YP_317321.1 CDS Nwi_0703 NC_007406.1 785786 786988 D MotA/TolQ/ExbB proton channel 785786..786988 Nitrobacter winogradskyi Nb-255 3674949 YP_317322.1 CDS Nwi_0704 NC_007406.1 786995 787465 D biopolymer transport protein ExbD/TolR 786995..787465 Nitrobacter winogradskyi Nb-255 3674950 YP_317323.1 CDS Nwi_0705 NC_007406.1 787462 788265 D TonB protein 787462..788265 Nitrobacter winogradskyi Nb-255 3674951 YP_317324.1 CDS Nwi_0706 NC_007406.1 788265 788825 D invasion associated locus B 788265..788825 Nitrobacter winogradskyi Nb-255 3674952 YP_317325.1 CDS Nwi_0707 NC_007406.1 789068 789709 R ISRm2011-2 transposase complement(789068..789709) Nitrobacter winogradskyi Nb-255 3674953 YP_317326.1 CDS Nwi_0708 NC_007406.1 789661 790011 R transposase complement(789661..790011) Nitrobacter winogradskyi Nb-255 3674954 YP_317327.1 CDS Nwi_0709 NC_007406.1 790808 791005 R hypothetical protein complement(790808..791005) Nitrobacter winogradskyi Nb-255 3674955 YP_317328.1 CDS Nwi_0710 NC_007406.1 791600 792346 R hypothetical protein complement(791600..792346) Nitrobacter winogradskyi Nb-255 3674956 YP_317329.1 CDS Nwi_0711 NC_007406.1 793053 793460 D hypothetical protein 793053..793460 Nitrobacter winogradskyi Nb-255 3674957 YP_317330.1 CDS Nwi_0712 NC_007406.1 793855 794409 R cytochrome c, class I complement(793855..794409) Nitrobacter winogradskyi Nb-255 3674958 YP_317331.1 CDS Nwi_0713 NC_007406.1 794740 796005 R diaminopimelate decarboxylase complement(794740..796005) Nitrobacter winogradskyi Nb-255 3674959 YP_317332.1 CDS Nwi_0714 NC_007406.1 796141 796446 R hypothetical protein complement(796141..796446) Nitrobacter winogradskyi Nb-255 3674960 YP_317333.1 CDS Nwi_0715 NC_007406.1 796508 797905 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(796508..797905) Nitrobacter winogradskyi Nb-255 3674961 YP_317334.1 CDS Nwi_0716 NC_007406.1 798045 798716 D thioredoxin-like protein 798045..798716 Nitrobacter winogradskyi Nb-255 3674962 YP_317335.1 CDS Nwi_0717 NC_007406.1 799266 803639 D hypothetical protein 799266..803639 Nitrobacter winogradskyi Nb-255 3674963 YP_317336.1 CDS Nwi_0718 NC_007406.1 803845 804174 R hypothetical protein complement(803845..804174) Nitrobacter winogradskyi Nb-255 3674964 YP_317337.1 CDS Nwi_0719 NC_007406.1 804319 806781 D BFD-like (2Fe-2S)-binding protein 804319..806781 Nitrobacter winogradskyi Nb-255 3676923 YP_317338.1 CDS Nwi_0720 NC_007406.1 806778 807107 D Rieske (2Fe-2S) protein 806778..807107 Nitrobacter winogradskyi Nb-255 3676924 YP_317339.1 CDS Nwi_0721 NC_007406.1 807624 808250 D glutathione S-transferase 807624..808250 Nitrobacter winogradskyi Nb-255 3676925 YP_317340.1 CDS Nwi_0722 NC_007406.1 808247 809215 D hypothetical protein 808247..809215 Nitrobacter winogradskyi Nb-255 3676926 YP_317341.1 CDS Nwi_0723 NC_007406.1 809408 809617 D hypothetical protein 809408..809617 Nitrobacter winogradskyi Nb-255 3676927 YP_317342.1 CDS Nwi_0724 NC_007406.1 809694 810686 D FecR protein 809694..810686 Nitrobacter winogradskyi Nb-255 3676928 YP_317343.1 CDS Nwi_0725 NC_007406.1 810794 812695 D TonB-dependent receptor protein 810794..812695 Nitrobacter winogradskyi Nb-255 3676929 YP_317344.1 CDS Nwi_0726 NC_007406.1 812692 813231 D ferric siderophore receptor 812692..813231 Nitrobacter winogradskyi Nb-255 3676930 YP_317345.1 CDS Nwi_0727 NC_007406.1 813841 814290 D hypothetical protein 813841..814290 Nitrobacter winogradskyi Nb-255 3676931 YP_317346.1 CDS Nwi_0728 NC_007406.1 814287 815561 D hypothetical protein 814287..815561 Nitrobacter winogradskyi Nb-255 3676932 YP_317347.1 CDS Nwi_0729 NC_007406.1 815576 816109 D hypothetical protein 815576..816109 Nitrobacter winogradskyi Nb-255 3676933 YP_317348.1 CDS Nwi_0730 NC_007406.1 816327 817706 D type IV secretory pathway VirD4 components 816327..817706 Nitrobacter winogradskyi Nb-255 3676934 YP_317349.1 CDS Nwi_0731 NC_007406.1 817732 818067 R hypothetical protein complement(817732..818067) Nitrobacter winogradskyi Nb-255 3676935 YP_317350.1 CDS Nwi_0732 NC_007406.1 818064 818417 R hypothetical protein complement(818064..818417) Nitrobacter winogradskyi Nb-255 3676936 YP_317351.1 CDS Nwi_0733 NC_007406.1 818733 819362 D outer membrane protein 818733..819362 Nitrobacter winogradskyi Nb-255 3676937 YP_317352.1 CDS Nwi_0734 NC_007406.1 819773 820015 R IS511, transposase OrfB complement(819773..820015) Nitrobacter winogradskyi Nb-255 3676938 YP_317353.1 CDS Nwi_0735 NC_007406.1 821024 823315 D hypothetical protein 821024..823315 Nitrobacter winogradskyi Nb-255 3676939 YP_317354.1 CDS Nwi_0736 NC_007406.1 823419 824285 R hypothetical protein complement(823419..824285) Nitrobacter winogradskyi Nb-255 3676940 YP_317355.1 CDS Nwi_0737 NC_007406.1 824553 826181 D resolvase 824553..826181 Nitrobacter winogradskyi Nb-255 3675994 YP_317356.1 CDS Nwi_0738 NC_007406.1 826403 826927 D hypothetical protein 826403..826927 Nitrobacter winogradskyi Nb-255 3674353 YP_317357.1 CDS Nwi_0739 NC_007406.1 827115 827387 R hypothetical protein complement(827115..827387) Nitrobacter winogradskyi Nb-255 3674354 YP_317358.1 CDS Nwi_0740 NC_007406.1 827403 828005 D hypothetical protein 827403..828005 Nitrobacter winogradskyi Nb-255 3674355 YP_317359.1 CDS Nwi_0741 NC_007406.1 828012 828680 D DSBA oxidoreductase 828012..828680 Nitrobacter winogradskyi Nb-255 3674356 YP_317360.1 CDS Nwi_0742 NC_007406.1 828718 829140 R hypothetical protein complement(828718..829140) Nitrobacter winogradskyi Nb-255 3674357 YP_317361.1 CDS Nwi_0743 NC_007406.1 829423 829875 D hypothetical protein 829423..829875 Nitrobacter winogradskyi Nb-255 3674358 YP_317362.1 CDS Nwi_0744 NC_007406.1 829993 830964 R serine protease complement(829993..830964) Nitrobacter winogradskyi Nb-255 3674359 YP_317363.1 CDS Nwi_0745 NC_007406.1 831106 831681 R HNH endonuclease complement(831106..831681) Nitrobacter winogradskyi Nb-255 3674360 YP_317364.1 CDS Nwi_0747 NC_007406.1 833659 834312 R DNA-3-methyladenine glycosidase II complement(833659..834312) Nitrobacter winogradskyi Nb-255 3674362 YP_317365.1 CDS Nwi_0748 NC_007406.1 834359 835231 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 834359..835231 Nitrobacter winogradskyi Nb-255 3674363 YP_317366.1 CDS Nwi_0749 NC_007406.1 835353 836609 D Signal transduction histidine kinase 835353..836609 Nitrobacter winogradskyi Nb-255 3674364 YP_317367.1 CDS Nwi_0750 NC_007406.1 836536 837429 R ribonuclease BN complement(836536..837429) Nitrobacter winogradskyi Nb-255 3674365 YP_317368.1 CDS Nwi_0751 NC_007406.1 837574 837768 D hypothetical protein 837574..837768 Nitrobacter winogradskyi Nb-255 3674366 YP_317369.1 CDS Nwi_0752 NC_007406.1 837798 838370 D cobalamin adenosyltransferase 837798..838370 Nitrobacter winogradskyi Nb-255 3674367 YP_317370.1 CDS Nwi_0753 NC_007406.1 838516 839271 D electron transfer flavoprotein subunit beta 838516..839271 Nitrobacter winogradskyi Nb-255 3674368 YP_317371.1 CDS Nwi_0754 NC_007406.1 839271 840215 D electron transfer flavoprotein subunit alpha/beta 839271..840215 Nitrobacter winogradskyi Nb-255 3674369 YP_317372.1 CDS Nwi_0755 NC_007406.1 840321 841202 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 840321..841202 Nitrobacter winogradskyi Nb-255 3674370 YP_317373.1 CDS Nwi_0756 NC_007406.1 841629 842690 R cobalamin synthesis protein CobW complement(841629..842690) Nitrobacter winogradskyi Nb-255 3676073 YP_317374.1 CDS Nwi_0757 NC_007406.1 842907 843188 R hypothetical protein complement(842907..843188) Nitrobacter winogradskyi Nb-255 3676074 YP_317375.1 CDS Nwi_0758 NC_007406.1 843731 843988 D hypothetical protein 843731..843988 Nitrobacter winogradskyi Nb-255 3676075 YP_317376.1 CDS Nwi_0759 NC_007406.1 844167 845435 D hypothetical protein 844167..845435 Nitrobacter winogradskyi Nb-255 3676076 YP_317377.1 CDS Nwi_0760 NC_007406.1 845451 845903 R hypothetical protein complement(845451..845903) Nitrobacter winogradskyi Nb-255 3676077 YP_317378.1 CDS Nwi_0761 NC_007406.1 846483 847340 D cytochrome c oxidase subunit II 846483..847340 Nitrobacter winogradskyi Nb-255 3676078 YP_317379.1 CDS Nwi_0762 NC_007406.1 847441 849060 D cytochrome c oxidase subunit I 847441..849060 Nitrobacter winogradskyi Nb-255 3676079 YP_317380.1 CDS Nwi_0763 NC_007406.1 849000 850061 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 849000..850061 Nitrobacter winogradskyi Nb-255 3676080 YP_317381.1 CDS Nwi_0764 NC_007406.1 850078 850248 D CoxF protein 850078..850248 Nitrobacter winogradskyi Nb-255 3676081 YP_317382.1 CDS Nwi_0765 NC_007406.1 850255 850896 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 850255..850896 Nitrobacter winogradskyi Nb-255 3676082 YP_317383.1 CDS Nwi_0766 NC_007406.1 850993 851847 D cytochrome c oxidase subunit III 850993..851847 Nitrobacter winogradskyi Nb-255 3676083 YP_317384.1 CDS Nwi_0767 NC_007406.1 851920 852312 D hypothetical protein 851920..852312 Nitrobacter winogradskyi Nb-255 3676084 YP_317385.1 CDS Nwi_0768 NC_007406.1 852309 853061 D surfeit locus 1 852309..853061 Nitrobacter winogradskyi Nb-255 3674849 YP_317386.1 CDS Nwi_0769 NC_007406.1 853108 853833 R cytochrome o ubiquinol oxidase subunit III complement(853108..853833) Nitrobacter winogradskyi Nb-255 3674850 YP_317387.1 CDS Nwi_0770 NC_007406.1 853830 855803 R cytochrome c oxidase subunit I complement(853830..855803) Nitrobacter winogradskyi Nb-255 3674309 YP_317388.1 CDS Nwi_0771 NC_007406.1 855976 857487 R glycosyltransferase complement(855976..857487) Nitrobacter winogradskyi Nb-255 3674310 YP_317389.1 CDS Nwi_0772 NC_007406.1 857625 858371 R hypothetical protein complement(857625..858371) Nitrobacter winogradskyi Nb-255 3674311 YP_317390.1 CDS Nwi_0773 NC_007406.1 859059 860039 D cytochrome c, class I 859059..860039 Nitrobacter winogradskyi Nb-255 3674312 YP_317391.1 CDS Nwi_0774 NC_007406.1 860039 863683 D nitrate reductase subunit alpha 860039..863683 Nitrobacter winogradskyi Nb-255 3674313 YP_317392.1 CDS Nwi_0775 NC_007406.1 863959 864156 R hypothetical protein complement(863959..864156) Nitrobacter winogradskyi Nb-255 3676053 YP_317393.1 CDS Nwi_0776 NC_007406.1 864442 865983 D nitrate reductase subunit beta 864442..865983 Nitrobacter winogradskyi Nb-255 3676054 YP_317394.1 CDS Nwi_0777 NC_007406.1 866119 867147 D nitrate reductase subunit delta 866119..867147 Nitrobacter winogradskyi Nb-255 3676055 YP_317395.1 CDS Nwi_0778 NC_007406.1 867182 867859 D nitrate reductase subunit gamma 867182..867859 Nitrobacter winogradskyi Nb-255 3676056 YP_317396.1 CDS Nwi_0779 NC_007406.1 868091 869347 D major facilitator superfamily transporter 868091..869347 Nitrobacter winogradskyi Nb-255 3676057 YP_317397.1 CDS Nwi_0780 NC_007406.1 869453 870526 D C4-dicarboxylate transporter/malic acid transport protein 869453..870526 Nitrobacter winogradskyi Nb-255 3676058 YP_317398.1 CDS Nwi_0781 NC_007406.1 870660 871025 R transposase (class I) complement(870660..871025) Nitrobacter winogradskyi Nb-255 3676059 YP_317399.1 CDS Nwi_0782 NC_007406.1 871679 872392 R integrase catalytic subunit complement(871679..872392) Nitrobacter winogradskyi Nb-255 3676060 YP_317400.1 CDS Nwi_0783 NC_007406.1 872656 873030 R transposase IS3/IS911 complement(872656..873030) Nitrobacter winogradskyi Nb-255 3676061 YP_317401.1 CDS Nwi_0784 NC_007406.1 873123 873389 R prevent-host-death protein complement(873123..873389) Nitrobacter winogradskyi Nb-255 3676062 YP_317402.1 CDS Nwi_0785 NC_007406.1 873442 874263 D hypothetical protein 873442..874263 Nitrobacter winogradskyi Nb-255 3676063 YP_317403.1 CDS Nwi_0786 NC_007406.1 874270 875250 D hypothetical protein 874270..875250 Nitrobacter winogradskyi Nb-255 3676064 YP_317404.1 CDS Nwi_0787 NC_007406.1 875243 875497 R hypothetical protein complement(875243..875497) Nitrobacter winogradskyi Nb-255 3676065 YP_317405.1 CDS Nwi_0788 NC_007406.1 875639 875827 R hypothetical protein complement(875639..875827) Nitrobacter winogradskyi Nb-255 3676066 YP_317406.1 CDS Nwi_0789 NC_007406.1 875852 876421 R hypothetical protein complement(875852..876421) Nitrobacter winogradskyi Nb-255 3676067 YP_317407.1 CDS Nwi_0790 NC_007406.1 876496 876846 R hypothetical protein complement(876496..876846) Nitrobacter winogradskyi Nb-255 3676068 YP_317408.1 CDS Nwi_0791 NC_007406.1 876859 877557 R hypothetical protein complement(876859..877557) Nitrobacter winogradskyi Nb-255 3676069 YP_317409.1 CDS Nwi_0792 NC_007406.1 877569 881510 R gene transfer agent (GTA) like protein complement(877569..881510) Nitrobacter winogradskyi Nb-255 3676070 YP_317410.1 CDS Nwi_0793 NC_007406.1 881609 881872 D hypothetical protein 881609..881872 Nitrobacter winogradskyi Nb-255 3676071 YP_317411.1 CDS Nwi_0794 NC_007406.1 881869 882330 R phage cell wall peptidase, NlpC/P60 complement(881869..882330) Nitrobacter winogradskyi Nb-255 3676072 YP_317412.1 CDS Nwi_0795 NC_007406.1 882327 883214 R hypothetical protein complement(882327..883214) Nitrobacter winogradskyi Nb-255 3676016 YP_317413.1 CDS Nwi_0796 NC_007406.1 883211 883801 R hypothetical protein complement(883211..883801) Nitrobacter winogradskyi Nb-255 3676017 YP_317414.1 CDS Nwi_0797 NC_007406.1 883801 887148 R phage-related minor tail protein complement(883801..887148) Nitrobacter winogradskyi Nb-255 3676018 YP_317415.1 CDS Nwi_0798 NC_007406.1 887145 887291 R hypothetical protein complement(887145..887291) Nitrobacter winogradskyi Nb-255 3676019 YP_317416.1 CDS Nwi_0799 NC_007406.1 887453 887809 R hypothetical protein complement(887453..887809) Nitrobacter winogradskyi Nb-255 3676020 YP_317417.1 CDS Nwi_0800 NC_007406.1 887850 888791 R hypothetical protein complement(887850..888791) Nitrobacter winogradskyi Nb-255 3676021 YP_317418.1 CDS Nwi_0801 NC_007406.1 888816 889250 R hypothetical protein complement(888816..889250) Nitrobacter winogradskyi Nb-255 3676022 YP_317419.1 CDS Nwi_0802 NC_007406.1 889264 889941 R hypothetical protein complement(889264..889941) Nitrobacter winogradskyi Nb-255 3676023 YP_317420.1 CDS Nwi_0803 NC_007406.1 889963 890571 D hypothetical protein 889963..890571 Nitrobacter winogradskyi Nb-255 3676024 YP_317421.1 CDS Nwi_0804 NC_007406.1 890583 890942 D hypothetical protein 890583..890942 Nitrobacter winogradskyi Nb-255 3676025 YP_317422.1 CDS Nwi_0805 NC_007406.1 890946 891263 R hypothetical protein complement(890946..891263) Nitrobacter winogradskyi Nb-255 3676026 YP_317423.1 CDS Nwi_0806 NC_007406.1 891260 891610 R hypothetical protein complement(891260..891610) Nitrobacter winogradskyi Nb-255 3676027 YP_317424.1 CDS Nwi_0807 NC_007406.1 891640 893709 R peptidase U35 complement(891640..893709) Nitrobacter winogradskyi Nb-255 3676028 YP_317425.1 CDS Nwi_0808 NC_007406.1 893727 895262 R Phage portal protein, lambda complement(893727..895262) Nitrobacter winogradskyi Nb-255 3676029 YP_317426.1 CDS Nwi_0809 NC_007406.1 895262 895471 R hypothetical protein complement(895262..895471) Nitrobacter winogradskyi Nb-255 3676030 YP_317427.1 CDS Nwi_0810 NC_007406.1 895490 897334 R phage terminase GpA complement(895490..897334) Nitrobacter winogradskyi Nb-255 3676031 YP_317428.1 CDS Nwi_0811 NC_007406.1 897282 897854 R hypothetical protein complement(897282..897854) Nitrobacter winogradskyi Nb-255 3676032 YP_317429.1 CDS Nwi_0812 NC_007406.1 897963 898211 D hypothetical protein 897963..898211 Nitrobacter winogradskyi Nb-255 3676033 YP_317430.1 CDS Nwi_0813 NC_007406.1 898236 898694 D hypothetical protein 898236..898694 Nitrobacter winogradskyi Nb-255 3676034 YP_317431.1 CDS Nwi_0814 NC_007406.1 899224 899928 R hypothetical protein complement(899224..899928) Nitrobacter winogradskyi Nb-255 3675996 YP_317432.1 CDS Nwi_0815 NC_007406.1 899925 900851 R hypothetical protein complement(899925..900851) Nitrobacter winogradskyi Nb-255 3675997 YP_317433.1 CDS Nwi_0816 NC_007406.1 900844 901587 R ParB-like nuclease complement(900844..901587) Nitrobacter winogradskyi Nb-255 3675998 YP_317434.1 CDS Nwi_0817 NC_007406.1 901990 902418 R hypothetical protein complement(901990..902418) Nitrobacter winogradskyi Nb-255 3675999 YP_317435.1 CDS Nwi_0818 NC_007406.1 902415 902948 R hypothetical protein complement(902415..902948) Nitrobacter winogradskyi Nb-255 3676000 YP_317436.1 CDS Nwi_0819 NC_007406.1 902963 903670 R hypothetical protein complement(902963..903670) Nitrobacter winogradskyi Nb-255 3676001 YP_317437.1 CDS Nwi_0820 NC_007406.1 903885 906116 R ATPase complement(903885..906116) Nitrobacter winogradskyi Nb-255 3676002 YP_317438.1 CDS Nwi_0821 NC_007406.1 906196 906831 R hypothetical protein complement(906196..906831) Nitrobacter winogradskyi Nb-255 3676003 YP_317439.1 CDS Nwi_0822 NC_007406.1 906873 907658 R hypothetical protein complement(906873..907658) Nitrobacter winogradskyi Nb-255 3676004 YP_317440.1 CDS Nwi_0823 NC_007406.1 907655 907927 R hypothetical protein complement(907655..907927) Nitrobacter winogradskyi Nb-255 3676005 YP_317441.1 CDS Nwi_0824 NC_007406.1 907924 908229 R hypothetical protein complement(907924..908229) Nitrobacter winogradskyi Nb-255 3676006 YP_317442.1 CDS Nwi_0825 NC_007406.1 908504 909250 D hypothetical protein 908504..909250 Nitrobacter winogradskyi Nb-255 3676007 YP_317443.1 CDS Nwi_0826 NC_007406.1 909250 909540 D XRE family transcriptional regulator 909250..909540 Nitrobacter winogradskyi Nb-255 3676008 YP_317444.1 CDS Nwi_0827 NC_007406.1 909571 910206 D hypothetical protein 909571..910206 Nitrobacter winogradskyi Nb-255 3676009 YP_317445.1 CDS Nwi_0828 NC_007406.1 910233 910916 R hypothetical protein complement(910233..910916) Nitrobacter winogradskyi Nb-255 3676010 YP_317446.1 CDS Nwi_0829 NC_007406.1 910873 911781 R SMF protein complement(910873..911781) Nitrobacter winogradskyi Nb-255 3676011 YP_317447.1 CDS Nwi_0830 NC_007406.1 911937 912203 R XRE family transcriptional regulator complement(911937..912203) Nitrobacter winogradskyi Nb-255 3676012 YP_317448.1 CDS Nwi_0831 NC_007406.1 912285 913487 R Phage integrase complement(912285..913487) Nitrobacter winogradskyi Nb-255 3676013 YP_317449.1 CDS Nwi_0832 NC_007406.1 913692 914087 R hypothetical protein complement(913692..914087) Nitrobacter winogradskyi Nb-255 3676014 YP_317450.1 CDS Nwi_0833 NC_007406.1 914089 915141 R cobyrinic acid a,c-diamide synthase complement(914089..915141) Nitrobacter winogradskyi Nb-255 3676015 YP_317451.1 CDS Nwi_0834 NC_007406.1 915690 916523 R recombinase complement(915690..916523) Nitrobacter winogradskyi Nb-255 3676275 YP_317452.1 CDS Nwi_0836 NC_007406.1 917155 917670 R N-acetyltransferase complement(917155..917670) Nitrobacter winogradskyi Nb-255 3676277 YP_317453.1 CDS Nwi_0837 NC_007406.1 917658 917924 R hypothetical protein complement(917658..917924) Nitrobacter winogradskyi Nb-255 3676278 YP_317454.1 CDS Nwi_0838 NC_007406.1 918447 919307 D integrase catalytic subunit 918447..919307 Nitrobacter winogradskyi Nb-255 3676279 YP_317455.1 CDS Nwi_0839 NC_007406.1 919670 919930 D hypothetical protein 919670..919930 Nitrobacter winogradskyi Nb-255 3676280 YP_317456.1 CDS Nwi_0840 NC_007406.1 920293 920607 D hypothetical protein 920293..920607 Nitrobacter winogradskyi Nb-255 3676281 YP_317457.1 CDS Nwi_0841 NC_007406.1 920701 921204 D hypothetical protein 920701..921204 Nitrobacter winogradskyi Nb-255 3676282 YP_317458.1 CDS Nwi_0842 NC_007406.1 921358 921723 D ISBm1, transposase orfA 921358..921723 Nitrobacter winogradskyi Nb-255 3676283 YP_317459.1 CDS Nwi_0843 NC_007406.1 922284 922499 R XRE family transcriptional regulator complement(922284..922499) Nitrobacter winogradskyi Nb-255 3676284 YP_317460.1 CDS Nwi_0844 NC_007406.1 922723 922989 D hypothetical protein 922723..922989 Nitrobacter winogradskyi Nb-255 3676285 YP_317461.1 CDS Nwi_0845 NC_007406.1 923230 923472 D hypothetical protein 923230..923472 Nitrobacter winogradskyi Nb-255 3676286 YP_317462.1 CDS Nwi_0846 NC_007406.1 923481 924344 D replication protein A 923481..924344 Nitrobacter winogradskyi Nb-255 3676287 YP_317463.1 CDS Nwi_0847 NC_007406.1 924490 925248 D DNA methylase N-4/N-6 924490..925248 Nitrobacter winogradskyi Nb-255 3676288 YP_317464.1 CDS Nwi_0848 NC_007406.1 925417 925737 D hypothetical protein 925417..925737 Nitrobacter winogradskyi Nb-255 3676289 YP_317465.1 CDS Nwi_0849 NC_007406.1 925734 926294 D conjugal transfer protein precursor 925734..926294 Nitrobacter winogradskyi Nb-255 3676290 YP_317466.1 CDS Nwi_0850 NC_007406.1 926329 927339 D lytic transglycosylase, catalytic 926329..927339 Nitrobacter winogradskyi Nb-255 3676291 YP_317467.1 CDS Nwi_0851 NC_007406.1 927508 928149 R ISRm2011-2 transposase complement(927508..928149) Nitrobacter winogradskyi Nb-255 3676292 YP_317468.1 CDS Nwi_0852 NC_007406.1 928101 928451 R transposase complement(928101..928451) Nitrobacter winogradskyi Nb-255 3676293 YP_317469.1 CDS Nwi_0853 NC_007406.1 928579 929670 D transposase IS116/IS110/IS902 928579..929670 Nitrobacter winogradskyi Nb-255 3676294 YP_317470.1 CDS Nwi_0854 NC_007406.1 929793 930581 D hypothetical protein 929793..930581 Nitrobacter winogradskyi Nb-255 3676295 YP_317471.1 CDS Nwi_0855 NC_007406.1 930678 931334 D hypothetical protein 930678..931334 Nitrobacter winogradskyi Nb-255 3674857 YP_317472.1 CDS Nwi_0856 NC_007406.1 931448 931702 D prevent-host-death protein 931448..931702 Nitrobacter winogradskyi Nb-255 3677198 YP_317473.1 CDS Nwi_0857 NC_007406.1 931699 932121 D twitching motility protein PilT 931699..932121 Nitrobacter winogradskyi Nb-255 3677199 YP_317474.1 CDS Nwi_0858 NC_007406.1 932247 932909 D TENA/THI-4 protein 932247..932909 Nitrobacter winogradskyi Nb-255 3677200 YP_317475.1 CDS Nwi_0859 NC_007406.1 932922 933407 D hypothetical protein 932922..933407 Nitrobacter winogradskyi Nb-255 3677201 YP_317476.1 CDS Nwi_0860 NC_007406.1 933407 934615 D conjugation TrbI-like protein 933407..934615 Nitrobacter winogradskyi Nb-255 3677202 YP_317477.1 CDS Nwi_0861 NC_007406.1 934612 934839 D hypothetical protein 934612..934839 Nitrobacter winogradskyi Nb-255 3677203 YP_317478.1 CDS Nwi_0862 NC_007406.1 935136 935624 D Phage Gp37Gp68 935136..935624 Nitrobacter winogradskyi Nb-255 3677204 YP_317479.1 CDS Nwi_0863 NC_007406.1 935386 936057 R hypothetical protein complement(935386..936057) Nitrobacter winogradskyi Nb-255 3677205 YP_317480.1 CDS Nwi_0864 NC_007406.1 936674 937543 D beta-lactamase-like protein 936674..937543 Nitrobacter winogradskyi Nb-255 3674858 YP_317481.1 CDS Nwi_0865 NC_007406.1 937751 938731 R Fis family transcriptional regulator complement(937751..938731) Nitrobacter winogradskyi Nb-255 3674859 YP_317482.1 CDS Nwi_0866 NC_007406.1 938728 939102 R transposase IS3/IS911 complement(938728..939102) Nitrobacter winogradskyi Nb-255 3674860 YP_317483.1 CDS Nwi_0867 NC_007406.1 939014 939706 R hypothetical protein complement(939014..939706) Nitrobacter winogradskyi Nb-255 3674861 YP_317484.1 CDS Nwi_0868 NC_007406.1 939919 940689 R hypothetical protein complement(939919..940689) Nitrobacter winogradskyi Nb-255 3674862 YP_317485.1 CDS Nwi_0869 NC_007406.1 940869 941243 D transposase IS3/IS911 940869..941243 Nitrobacter winogradskyi Nb-255 3674863 YP_317486.1 CDS Nwi_0870 NC_007406.1 941240 942301 D Fis family transcriptional regulator 941240..942301 Nitrobacter winogradskyi Nb-255 3674314 YP_317487.1 CDS Nwi_0871 NC_007406.1 942213 942587 D transposase IS3/IS911 942213..942587 Nitrobacter winogradskyi Nb-255 3674315 YP_317488.1 CDS Nwi_0872 NC_007406.1 942584 943564 D Fis family transcriptional regulator 942584..943564 Nitrobacter winogradskyi Nb-255 3674316 YP_317489.1 CDS Nwi_0873 NC_007406.1 944538 944762 R hypothetical protein complement(944538..944762) Nitrobacter winogradskyi Nb-255 3674317 YP_317490.1 CDS Nwi_0874 NC_007406.1 944812 949281 R hypothetical protein complement(944812..949281) Nitrobacter winogradskyi Nb-255 3674318 YP_317491.1 CDS Nwi_0875 NC_007406.1 949281 951314 R surface antigen (D15) complement(949281..951314) Nitrobacter winogradskyi Nb-255 3674319 YP_317492.1 CDS Nwi_0876 NC_007406.1 951773 952837 R choloylglycine hydrolase complement(951773..952837) Nitrobacter winogradskyi Nb-255 3674320 YP_317493.1 CDS Nwi_0877 NC_007406.1 953085 953642 R hypothetical protein complement(953085..953642) Nitrobacter winogradskyi Nb-255 3674321 YP_317494.1 CDS Nwi_0878 NC_007406.1 953933 954487 D hypothetical protein 953933..954487 Nitrobacter winogradskyi Nb-255 3674322 YP_317495.1 CDS Nwi_0879 NC_007406.1 954772 955908 D TonB-dependent receptor 954772..955908 Nitrobacter winogradskyi Nb-255 3674323 YP_317496.1 CDS Nwi_0880 NC_007406.1 955905 956762 D molybdate ABC transporter substrate-binding protein 955905..956762 Nitrobacter winogradskyi Nb-255 3674324 YP_317497.1 CDS Nwi_0881 NC_007406.1 957163 958599 R GntR family transcriptional regulator complement(957163..958599) Nitrobacter winogradskyi Nb-255 3674325 YP_317498.1 CDS Nwi_0882 NC_007406.1 958862 959641 D class II aldolase/adducin domain-containing protein 958862..959641 Nitrobacter winogradskyi Nb-255 3674326 YP_317499.1 CDS Nwi_0883 NC_007406.1 959684 960568 D dihydrodipicolinate synthetase 959684..960568 Nitrobacter winogradskyi Nb-255 3674327 YP_317500.1 CDS Nwi_0884 NC_007406.1 960829 962349 R hypothetical protein complement(960829..962349) Nitrobacter winogradskyi Nb-255 3674328 YP_317501.1 CDS Nwi_0885 NC_007406.1 962444 964036 R hypothetical protein complement(962444..964036) Nitrobacter winogradskyi Nb-255 3674329 YP_317502.1 CDS Nwi_0886 NC_007406.1 964039 965652 R hypothetical protein complement(964039..965652) Nitrobacter winogradskyi Nb-255 3674330 YP_317503.1 CDS Nwi_0887 NC_007406.1 965707 966957 R hypothetical protein complement(965707..966957) Nitrobacter winogradskyi Nb-255 3674331 YP_317504.1 CDS Nwi_0888 NC_007406.1 967400 967585 D outer membrane ferric siderophore receptor 967400..967585 Nitrobacter winogradskyi Nb-255 3674332 YP_317505.1 CDS Nwi_0889 NC_007406.1 967844 969508 R hypothetical protein complement(967844..969508) Nitrobacter winogradskyi Nb-255 3674333 YP_317506.1 CDS Nwi_0890 NC_007406.1 969550 970437 R beta-lactamase-like protein complement(969550..970437) Nitrobacter winogradskyi Nb-255 3674334 YP_317507.1 CDS Nwi_0891 NC_007406.1 970777 971415 D alkyl hydroperoxide reductase 970777..971415 Nitrobacter winogradskyi Nb-255 3674335 YP_317508.1 CDS Nwi_0892 NC_007406.1 971412 971807 D arsR family transcriptional regulator 971412..971807 Nitrobacter winogradskyi Nb-255 3674336 YP_317509.1 CDS Nwi_0893 NC_007406.1 971908 972351 R hypothetical protein complement(971908..972351) Nitrobacter winogradskyi Nb-255 3674337 YP_317510.1 CDS Nwi_0894 NC_007406.1 972786 973283 D ECF subfamily RNA polymerase sigma-24 factor 972786..973283 Nitrobacter winogradskyi Nb-255 3674338 YP_317511.1 CDS Nwi_0895 NC_007406.1 973483 974445 D FecR protein 973483..974445 Nitrobacter winogradskyi Nb-255 3674339 YP_317512.1 CDS Nwi_0896 NC_007406.1 974569 975018 D TonB-dependent receptor 974569..975018 Nitrobacter winogradskyi Nb-255 3674340 YP_317513.1 CDS Nwi_0897 NC_007406.1 974988 976529 D hypothetical protein 974988..976529 Nitrobacter winogradskyi Nb-255 3674341 YP_317514.1 CDS Nwi_0898 NC_007406.1 976580 977608 D NAD-dependent epimerase/dehydratase 976580..977608 Nitrobacter winogradskyi Nb-255 3674342 YP_317515.1 CDS Nwi_0901 NC_007406.1 981530 981799 D hypothetical protein 981530..981799 Nitrobacter winogradskyi Nb-255 3674345 YP_317516.1 CDS Nwi_0902 NC_007406.1 981759 982211 R hypothetical protein complement(981759..982211) Nitrobacter winogradskyi Nb-255 3674346 YP_317517.1 CDS Nwi_0903 NC_007406.1 982432 982746 D hypothetical protein 982432..982746 Nitrobacter winogradskyi Nb-255 3674347 YP_317518.1 CDS Nwi_0904 NC_007406.1 982843 984339 R hypothetical protein complement(982843..984339) Nitrobacter winogradskyi Nb-255 3674348 YP_317519.1 CDS Nwi_0905 NC_007406.1 984742 985077 R hypothetical protein complement(984742..985077) Nitrobacter winogradskyi Nb-255 3674349 YP_317520.1 CDS Nwi_0906 NC_007406.1 986729 987157 D cupin 986729..987157 Nitrobacter winogradskyi Nb-255 3674350 YP_317521.1 CDS Nwi_0907 NC_007406.1 987283 989904 R hypothetical protein complement(987283..989904) Nitrobacter winogradskyi Nb-255 3674351 YP_317522.1 CDS Nwi_0908 NC_007406.1 989901 991025 R exonuclease SbcD complement(989901..991025) Nitrobacter winogradskyi Nb-255 3674352 YP_317523.1 CDS Nwi_0909 NC_007406.1 991028 997036 R DNA helicase complement(991028..997036) Nitrobacter winogradskyi Nb-255 3674371 YP_317524.1 CDS Nwi_0910 NC_007406.1 997300 997575 R hypothetical protein complement(997300..997575) Nitrobacter winogradskyi Nb-255 3674372 YP_317525.1 CDS Nwi_0911 NC_007406.1 997630 1000125 D heavy metal translocating P-type ATPase 997630..1000125 Nitrobacter winogradskyi Nb-255 3674373 YP_317526.1 CDS Nwi_0912 NC_007406.1 1000183 1000620 R hypothetical protein complement(1000183..1000620) Nitrobacter winogradskyi Nb-255 3674374 YP_317527.1 CDS Nwi_0913 NC_007406.1 1001153 1001758 D manganese and iron superoxide dismutase 1001153..1001758 Nitrobacter winogradskyi Nb-255 3674375 YP_317528.1 CDS Nwi_0914 NC_007406.1 1002119 1002874 D ABC transporter ATPase 1002119..1002874 Nitrobacter winogradskyi Nb-255 3674376 YP_317529.1 CDS Nwi_0915 NC_007406.1 1002881 1003750 D Mn2+/Zn2+ ABC transporter permease 1002881..1003750 Nitrobacter winogradskyi Nb-255 3674377 YP_317530.1 CDS Nwi_0916 NC_007406.1 1003764 1004687 D periplasmic solute binding protein 1003764..1004687 Nitrobacter winogradskyi Nb-255 3674378 YP_317531.1 CDS Nwi_0917 NC_007406.1 1004812 1005864 D cobalamin synthesis protein CobW 1004812..1005864 Nitrobacter winogradskyi Nb-255 3674379 YP_317532.1 CDS Nwi_0918 NC_007406.1 1005864 1006877 D hypothetical protein 1005864..1006877 Nitrobacter winogradskyi Nb-255 3674380 YP_317533.1 CDS Nwi_0919 NC_007406.1 1006874 1007137 R hypothetical protein complement(1006874..1007137) Nitrobacter winogradskyi Nb-255 3674381 YP_317534.1 CDS Nwi_0920 NC_007406.1 1007187 1007459 D hypothetical protein 1007187..1007459 Nitrobacter winogradskyi Nb-255 3674382 YP_317535.1 CDS Nwi_0921 NC_007406.1 1007820 1009256 R homospermidine synthase complement(1007820..1009256) Nitrobacter winogradskyi Nb-255 3674383 YP_317536.1 CDS Nwi_0922 NC_007406.1 1009808 1010263 R transcription elongation factor GreA/GreB region complement(1009808..1010263) Nitrobacter winogradskyi Nb-255 3674384 YP_317537.1 CDS Nwi_0923 NC_007406.1 1010612 1011211 R N-acetyltransferase complement(1010612..1011211) Nitrobacter winogradskyi Nb-255 3674385 YP_317538.1 CDS Nwi_0924 NC_007406.1 1011346 1012488 R orn/DAP/Arg decarboxylase 2 complement(1011346..1012488) Nitrobacter winogradskyi Nb-255 3674386 YP_317539.1 CDS Nwi_0925 NC_007406.1 1013162 1013422 R hypothetical protein complement(1013162..1013422) Nitrobacter winogradskyi Nb-255 3674387 YP_317540.1 CDS Nwi_0926 NC_007406.1 1013607 1015685 D peptidase M3A and M3B, thimet/oligopeptidase F 1013607..1015685 Nitrobacter winogradskyi Nb-255 3674388 YP_317541.1 CDS Nwi_0927 NC_007406.1 1015837 1016235 R hypothetical protein complement(1015837..1016235) Nitrobacter winogradskyi Nb-255 3674389 YP_317542.1 CDS hemH NC_007406.1 1016317 1017360 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1016317..1017360 Nitrobacter winogradskyi Nb-255 3674390 YP_317543.1 CDS Nwi_0929 NC_007406.1 1017580 1018578 D hypothetical protein 1017580..1018578 Nitrobacter winogradskyi Nb-255 3674391 YP_317544.1 CDS Nwi_0930 NC_007406.1 1018602 1019048 D hypothetical protein 1018602..1019048 Nitrobacter winogradskyi Nb-255 3674392 YP_317545.1 CDS Nwi_0931 NC_007406.1 1019065 1020042 R sugar isomerase, KpsF/GutQ family protein complement(1019065..1020042) Nitrobacter winogradskyi Nb-255 3674929 YP_317546.1 CDS Nwi_0932 NC_007406.1 1020371 1022062 D hypothetical protein 1020371..1022062 Nitrobacter winogradskyi Nb-255 3674930 YP_317547.1 CDS Nwi_0933 NC_007406.1 1022129 1022692 R hypothetical protein complement(1022129..1022692) Nitrobacter winogradskyi Nb-255 3674931 YP_317548.1 CDS Nwi_0934 NC_007406.1 1022952 1023356 R LysR family transcriptional regulator complement(1022952..1023356) Nitrobacter winogradskyi Nb-255 3674932 YP_317549.1 CDS Nwi_0935 NC_007406.1 1023424 1025961 R mechanosensitive ion channel protein MscS complement(1023424..1025961) Nitrobacter winogradskyi Nb-255 3674933 YP_317550.1 CDS Nwi_0936 NC_007406.1 1026441 1026716 D hypothetical protein 1026441..1026716 Nitrobacter winogradskyi Nb-255 3674934 YP_317551.1 CDS Nwi_0937 NC_007406.1 1026845 1028074 D pigment protein 1026845..1028074 Nitrobacter winogradskyi Nb-255 3674935 YP_317552.1 CDS Nwi_0938 NC_007406.1 1028083 1028625 D flavin reductase-like, FMN-binding 1028083..1028625 Nitrobacter winogradskyi Nb-255 3674936 YP_317553.1 CDS Nwi_0939 NC_007406.1 1028790 1030010 D hypothetical protein 1028790..1030010 Nitrobacter winogradskyi Nb-255 3674937 YP_317554.1 CDS Nwi_0940 NC_007406.1 1030184 1031236 D hypothetical protein 1030184..1031236 Nitrobacter winogradskyi Nb-255 3674938 YP_317555.1 CDS Nwi_0941 NC_007406.1 1031582 1033732 D TonB-dependent receptor 1031582..1033732 Nitrobacter winogradskyi Nb-255 3674939 YP_317556.1 CDS Nwi_0942 NC_007406.1 1033918 1034451 D hypothetical protein 1033918..1034451 Nitrobacter winogradskyi Nb-255 3674940 YP_317557.1 CDS Nwi_0943 NC_007406.1 1034534 1035460 D di-heme cytochrome c peroxidase 1034534..1035460 Nitrobacter winogradskyi Nb-255 3674941 YP_317558.1 CDS Nwi_0944 NC_007406.1 1035627 1036067 R hypothetical protein complement(1035627..1036067) Nitrobacter winogradskyi Nb-255 3674942 YP_317559.1 CDS Nwi_0945 NC_007406.1 1036226 1037743 D hypothetical protein 1036226..1037743 Nitrobacter winogradskyi Nb-255 3674943 YP_317560.1 CDS Nwi_0946 NC_007406.1 1037949 1040795 D alpha amylase 1037949..1040795 Nitrobacter winogradskyi Nb-255 3674944 YP_317561.1 CDS Nwi_0947 NC_007406.1 1040956 1041177 D hypothetical protein 1040956..1041177 Nitrobacter winogradskyi Nb-255 3674945 YP_317562.1 CDS Nwi_0948 NC_007406.1 1041603 1041842 R hypothetical protein complement(1041603..1041842) Nitrobacter winogradskyi Nb-255 3674965 YP_317563.1 CDS Nwi_0949 NC_007406.1 1041842 1042651 D aspartate/glutamate/uridylate kinase 1041842..1042651 Nitrobacter winogradskyi Nb-255 3674966 YP_317564.1 CDS Nwi_0950 NC_007406.1 1042664 1043497 D aspartate/glutamate/uridylate kinase 1042664..1043497 Nitrobacter winogradskyi Nb-255 3674967 YP_317565.1 CDS Nwi_0951 NC_007406.1 1043589 1045706 R para-aminobenzoate synthase, component I complement(1043589..1045706) Nitrobacter winogradskyi Nb-255 3674968 YP_317566.1 CDS Nwi_0952 NC_007406.1 1046030 1046824 D universal stress protein UspA 1046030..1046824 Nitrobacter winogradskyi Nb-255 3674969 YP_317567.1 CDS Nwi_0953 NC_007406.1 1047028 1047333 R hypothetical protein complement(1047028..1047333) Nitrobacter winogradskyi Nb-255 3674970 YP_317568.1 CDS Nwi_0954 NC_007406.1 1047904 1048620 D ISRm2011-2 transposase 1047904..1048620 Nitrobacter winogradskyi Nb-255 3674971 YP_317569.1 CDS Nwi_0955 NC_007406.1 1048623 1049339 R hypothetical protein complement(1048623..1049339) Nitrobacter winogradskyi Nb-255 3674972 YP_317570.1 CDS Nwi_0956 NC_007406.1 1049545 1049829 R hypothetical protein complement(1049545..1049829) Nitrobacter winogradskyi Nb-255 3674973 YP_317571.1 CDS Nwi_0957 NC_007406.1 1050572 1051600 R LuxR family transcriptional regulator complement(1050572..1051600) Nitrobacter winogradskyi Nb-255 3674974 YP_317572.1 CDS Nwi_0958 NC_007406.1 1051814 1052353 R hypothetical protein complement(1051814..1052353) Nitrobacter winogradskyi Nb-255 3674975 YP_317573.1 CDS Nwi_0959 NC_007406.1 1052540 1053124 D hypothetical protein 1052540..1053124 Nitrobacter winogradskyi Nb-255 3674976 YP_317574.1 CDS Nwi_0960 NC_007406.1 1053359 1054243 D hypothetical protein 1053359..1054243 Nitrobacter winogradskyi Nb-255 3674977 YP_317575.1 CDS Nwi_0961 NC_007406.1 1054376 1056298 D hypothetical protein 1054376..1056298 Nitrobacter winogradskyi Nb-255 3674978 YP_317576.1 CDS Nwi_0962 NC_007406.1 1056343 1058349 D type I secretion system ATPase, PrtD 1056343..1058349 Nitrobacter winogradskyi Nb-255 3674979 YP_317577.1 CDS Nwi_0963 NC_007406.1 1058387 1059730 D type I secretion membrane fusion protein, HlyD 1058387..1059730 Nitrobacter winogradskyi Nb-255 3674980 YP_317578.1 CDS Nwi_0964 NC_007406.1 1059788 1061308 D TPR and WD-40 repeat-containing protein 1059788..1061308 Nitrobacter winogradskyi Nb-255 3674981 YP_317579.1 CDS Nwi_0965 NC_007406.1 1061550 1063091 R nitrate reductase subunit beta complement(1061550..1063091) Nitrobacter winogradskyi Nb-255 3674982 YP_317580.1 CDS Nwi_0966 NC_007406.1 1063391 1064173 R hypothetical protein complement(1063391..1064173) Nitrobacter winogradskyi Nb-255 3674983 YP_317581.1 CDS Nwi_0967 NC_007406.1 1064401 1064817 D hypothetical protein 1064401..1064817 Nitrobacter winogradskyi Nb-255 3674984 YP_317582.1 CDS Nwi_0968 NC_007406.1 1064910 1066454 R tyrosinase complement(1064910..1066454) Nitrobacter winogradskyi Nb-255 3675004 YP_317583.1 CDS Nwi_0969 NC_007406.1 1066719 1067429 D hypothetical protein 1066719..1067429 Nitrobacter winogradskyi Nb-255 3675005 YP_317584.1 CDS Nwi_0970 NC_007406.1 1067621 1067851 R hypothetical protein complement(1067621..1067851) Nitrobacter winogradskyi Nb-255 3675006 YP_317585.1 CDS Nwi_0971 NC_007406.1 1068251 1068790 D this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1068251..1068790 Nitrobacter winogradskyi Nb-255 3675007 YP_317586.1 CDS Nwi_0972 NC_007406.1 1068877 1069275 D transposase 1068877..1069275 Nitrobacter winogradskyi Nb-255 3675008 YP_317587.1 CDS Nwi_0973 NC_007406.1 1069290 1069658 D transposase, IS4 1069290..1069658 Nitrobacter winogradskyi Nb-255 3675009 YP_317588.1 CDS mobA NC_007406.1 1069775 1070431 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1069775..1070431) Nitrobacter winogradskyi Nb-255 3675010 YP_317589.1 CDS Nwi_0975 NC_007406.1 1070561 1070866 D SirA-like protein 1070561..1070866 Nitrobacter winogradskyi Nb-255 3675011 YP_317590.1 CDS Nwi_0976 NC_007406.1 1071056 1071772 R ISRm2011-2 transposase complement(1071056..1071772) Nitrobacter winogradskyi Nb-255 3675012 YP_317591.1 CDS hemE NC_007406.1 1072081 1073058 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1072081..1073058) Nitrobacter winogradskyi Nb-255 3675013 YP_317592.1 CDS Nwi_0978 NC_007406.1 1073296 1073895 R stationary phase that binds TrpR repressor; TrpR binding protein WrbA complement(1073296..1073895) Nitrobacter winogradskyi Nb-255 3675014 YP_317593.1 CDS Nwi_0979 NC_007406.1 1073970 1074668 R pirin complement(1073970..1074668) Nitrobacter winogradskyi Nb-255 3675015 YP_317594.1 CDS Nwi_0980 NC_007406.1 1074831 1075745 D LysR family transcriptional regulator 1074831..1075745 Nitrobacter winogradskyi Nb-255 3675016 YP_317595.1 CDS Nwi_0981 NC_007406.1 1075955 1076239 D hypothetical protein 1075955..1076239 Nitrobacter winogradskyi Nb-255 3675017 YP_317596.1 CDS Nwi_0982 NC_007406.1 1076270 1077484 R diguanylate phophodiesterase complement(1076270..1077484) Nitrobacter winogradskyi Nb-255 3674403 YP_317597.1 CDS rpmJ NC_007406.1 1077822 1077947 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 1077822..1077947 Nitrobacter winogradskyi Nb-255 3674404 YP_317598.1 CDS Nwi_0984 NC_007406.1 1078278 1078943 D hypothetical protein 1078278..1078943 Nitrobacter winogradskyi Nb-255 3674405 YP_317599.1 CDS Nwi_0985 NC_007406.1 1079215 1079520 R hypothetical protein complement(1079215..1079520) Nitrobacter winogradskyi Nb-255 3674406 YP_317600.1 CDS Nwi_0986 NC_007406.1 1079737 1081173 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(1079737..1081173) Nitrobacter winogradskyi Nb-255 3674407 YP_317601.1 CDS Nwi_0987 NC_007406.1 1081170 1081754 R hypothetical protein complement(1081170..1081754) Nitrobacter winogradskyi Nb-255 3674855 YP_317602.1 CDS Nwi_0988 NC_007406.1 1081937 1082239 D hypothetical protein 1081937..1082239 Nitrobacter winogradskyi Nb-255 3674856 YP_317603.1 CDS Nwi_0989 NC_007406.1 1082412 1082681 D hypothetical protein 1082412..1082681 Nitrobacter winogradskyi Nb-255 3674395 YP_317604.1 CDS Nwi_0990 NC_007406.1 1082980 1084569 R hypothetical protein complement(1082980..1084569) Nitrobacter winogradskyi Nb-255 3674396 YP_317605.1 CDS Nwi_0991 NC_007406.1 1084847 1087282 R hypothetical protein complement(1084847..1087282) Nitrobacter winogradskyi Nb-255 3674397 YP_317606.1 CDS Nwi_0992 NC_007406.1 1087575 1089071 R Fis family transcriptional regulator complement(1087575..1089071) Nitrobacter winogradskyi Nb-255 3674398 YP_317607.1 CDS Nwi_0993 NC_007406.1 1089251 1091128 D peptidase M3B, oligoendopeptidase-related clade 3 1089251..1091128 Nitrobacter winogradskyi Nb-255 3674399 YP_317608.1 CDS Nwi_0994 NC_007406.1 1091528 1091680 D hypothetical protein 1091528..1091680 Nitrobacter winogradskyi Nb-255 3674400 YP_317609.1 CDS Nwi_0995 NC_007406.1 1091776 1092906 D alanine dehydrogenase 1091776..1092906 Nitrobacter winogradskyi Nb-255 3676205 YP_317610.1 CDS Nwi_0996 NC_007406.1 1093024 1093341 D NAD(P) transhydrogenase subunit alpha 1093024..1093341 Nitrobacter winogradskyi Nb-255 3676206 YP_317611.1 CDS Nwi_0997 NC_007406.1 1093500 1094897 D NAD/NADP transhydrogenase subunit beta 1093500..1094897 Nitrobacter winogradskyi Nb-255 3676207 YP_317612.1 CDS Nwi_0998 NC_007406.1 1094927 1095394 D hypothetical protein 1094927..1095394 Nitrobacter winogradskyi Nb-255 3676208 YP_317613.1 CDS rpsU NC_007406.1 1095758 1096045 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1095758..1096045) Nitrobacter winogradskyi Nb-255 3676209 YP_317614.1 CDS Nwi_1000 NC_007406.1 1096310 1097026 D porin involved in osmoregulation allowing water to move into and out of the cell in response to osmotic pressure; aquaporin Z 1096310..1097026 Nitrobacter winogradskyi Nb-255 3676210 YP_317615.1 CDS Nwi_1001 NC_007406.1 1097140 1098252 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1097140..1098252) Nitrobacter winogradskyi Nb-255 3676211 YP_317616.1 CDS Nwi_1002 NC_007406.1 1098249 1098737 R 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase complement(1098249..1098737) Nitrobacter winogradskyi Nb-255 3676212 YP_317617.1 CDS Nwi_1003 NC_007406.1 1098926 1099249 R hypothetical protein complement(1098926..1099249) Nitrobacter winogradskyi Nb-255 3676213 YP_317618.1 CDS Nwi_1004 NC_007406.1 1099368 1099553 D hypothetical protein 1099368..1099553 Nitrobacter winogradskyi Nb-255 3676214 YP_317619.1 CDS Nwi_1005 NC_007406.1 1099662 1100768 R FAD dependent oxidoreductase complement(1099662..1100768) Nitrobacter winogradskyi Nb-255 3676215 YP_317620.1 CDS Nwi_1006 NC_007406.1 1101201 1102349 D spermidine/putrescine ABC transporter ATP-binding subunit 1101201..1102349 Nitrobacter winogradskyi Nb-255 3676216 YP_317621.1 CDS Nwi_1007 NC_007406.1 1102346 1103260 D binding-protein dependent transport system inner membrane protein 1102346..1103260 Nitrobacter winogradskyi Nb-255 3677233 YP_317622.1 CDS Nwi_1008 NC_007406.1 1103257 1104078 D binding-protein dependent transport system inner membrane protein 1103257..1104078 Nitrobacter winogradskyi Nb-255 3677234 YP_317623.1 CDS Nwi_1009 NC_007406.1 1104130 1106100 R hypothetical protein complement(1104130..1106100) Nitrobacter winogradskyi Nb-255 3677235 YP_317624.1 CDS Nwi_1010 NC_007406.1 1106113 1107102 D coenzyme A transferase 1106113..1107102 Nitrobacter winogradskyi Nb-255 3677236 YP_317625.1 CDS Nwi_1011 NC_007406.1 1107156 1107806 D coenzyme A transferase 1107156..1107806 Nitrobacter winogradskyi Nb-255 3677237 YP_317626.1 CDS Nwi_1012 NC_007406.1 1107881 1110898 R Signal transduction histidine kinase complement(1107881..1110898) Nitrobacter winogradskyi Nb-255 3677238 YP_317627.1 CDS Nwi_1013 NC_007406.1 1111161 1111541 D hypothetical protein 1111161..1111541 Nitrobacter winogradskyi Nb-255 3677239 YP_317628.1 CDS Nwi_1014 NC_007406.1 1111722 1112168 D phasin 2 1111722..1112168 Nitrobacter winogradskyi Nb-255 3677240 YP_317629.1 CDS Nwi_1015 NC_007406.1 1112417 1112947 R transposase, IS4 complement(1112417..1112947) Nitrobacter winogradskyi Nb-255 3674864 YP_317630.1 CDS Nwi_1016 NC_007406.1 1114074 1114790 D ISRm2011-2 transposase 1114074..1114790 Nitrobacter winogradskyi Nb-255 3674416 YP_317631.1 CDS Nwi_1017 NC_007406.1 1115122 1115496 D transposase IS3/IS911 1115122..1115496 Nitrobacter winogradskyi Nb-255 3676686 YP_317632.1 CDS Nwi_1018 NC_007406.1 1115493 1116473 D Fis family transcriptional regulator 1115493..1116473 Nitrobacter winogradskyi Nb-255 3676687 YP_317633.1 CDS Nwi_1019 NC_007406.1 1117111 1117638 R hypothetical protein complement(1117111..1117638) Nitrobacter winogradskyi Nb-255 3676688 YP_317634.1 CDS Nwi_1020 NC_007406.1 1118547 1118798 D hypothetical protein 1118547..1118798 Nitrobacter winogradskyi Nb-255 3676689 YP_317635.1 CDS Nwi_1021 NC_007406.1 1118931 1119107 D hypothetical protein 1118931..1119107 Nitrobacter winogradskyi Nb-255 3676690 YP_317636.1 CDS Nwi_1022 NC_007406.1 1119178 1119492 R hypothetical protein complement(1119178..1119492) Nitrobacter winogradskyi Nb-255 3676691 YP_317637.1 CDS Nwi_1023 NC_007406.1 1119937 1120668 R hypothetical protein complement(1119937..1120668) Nitrobacter winogradskyi Nb-255 3676692 YP_317638.1 CDS Nwi_1024 NC_007406.1 1120814 1121653 D universal stress protein UspA 1120814..1121653 Nitrobacter winogradskyi Nb-255 3674875 YP_317639.1 CDS Nwi_1025 NC_007406.1 1121750 1122727 D glucokinase 1121750..1122727 Nitrobacter winogradskyi Nb-255 3674876 YP_317640.1 CDS Nwi_1026 NC_007406.1 1122828 1123007 R phosphoketolase complement(1122828..1123007) Nitrobacter winogradskyi Nb-255 3674877 YP_317641.1 CDS Nwi_1027 NC_007406.1 1123248 1123655 R response regulator receiver complement(1123248..1123655) Nitrobacter winogradskyi Nb-255 3674878 YP_317642.1 CDS fixJ NC_007406.1 1123727 1124344 R response regulator for histidine kinase FixL; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; response regulator FixJ complement(1123727..1124344) Nitrobacter winogradskyi Nb-255 3674879 YP_317643.1 CDS Nwi_1029 NC_007406.1 1124334 1125869 R Signal transduction histidine kinase complement(1124334..1125869) Nitrobacter winogradskyi Nb-255 3674880 YP_317644.1 CDS Nwi_1030 NC_007406.1 1126096 1126503 R hypothetical protein complement(1126096..1126503) Nitrobacter winogradskyi Nb-255 3674881 YP_317645.1 CDS Nwi_1031 NC_007406.1 1126803 1127234 D hypothetical protein 1126803..1127234 Nitrobacter winogradskyi Nb-255 3674882 YP_317646.1 CDS Nwi_1032 NC_007406.1 1127337 1127642 D ABC transporter substrate-binding protein 1127337..1127642 Nitrobacter winogradskyi Nb-255 3674883 YP_317647.1 CDS Nwi_1033 NC_007406.1 1128012 1128302 R hypothetical protein complement(1128012..1128302) Nitrobacter winogradskyi Nb-255 3674884 YP_317648.1 CDS Nwi_1034 NC_007406.1 1128327 1128491 R hypothetical protein complement(1128327..1128491) Nitrobacter winogradskyi Nb-255 3674885 YP_317649.1 CDS Nwi_1035 NC_007406.1 1128675 1129499 D universal stress protein UspA 1128675..1129499 Nitrobacter winogradskyi Nb-255 3674886 YP_317650.1 CDS fixK NC_007406.1 1129721 1130416 R transcriptional regulator that positively regulated fixLJ operon; upregulated transcription by FixJ; part of global network that controls expression of aerobic respiratory terminal oxidases and carbon and nitrogen metabolic enzymes; transcriptional regulator FixK complement(1129721..1130416) Nitrobacter winogradskyi Nb-255 3674887 YP_317651.1 CDS Nwi_1037 NC_007406.1 1131777 1131956 D hypothetical protein 1131777..1131956 Nitrobacter winogradskyi Nb-255 3674888 YP_317652.1 CDS Nwi_1038 NC_007406.1 1132041 1132424 R hypothetical protein complement(1132041..1132424) Nitrobacter winogradskyi Nb-255 3674889 YP_317653.1 CDS Nwi_1039 NC_007406.1 1132664 1132951 D hypothetical protein 1132664..1132951 Nitrobacter winogradskyi Nb-255 3674890 YP_317654.1 CDS Nwi_1040 NC_007406.1 1133281 1133523 R hypothetical protein complement(1133281..1133523) Nitrobacter winogradskyi Nb-255 3674891 YP_317655.1 CDS Nwi_1041 NC_007406.1 1133835 1134413 D hypothetical protein 1133835..1134413 Nitrobacter winogradskyi Nb-255 3674892 YP_317656.1 CDS Nwi_1042 NC_007406.1 1134819 1135670 R N-acetylmuramoyl-L-alanine amidase complement(1134819..1135670) Nitrobacter winogradskyi Nb-255 3674893 YP_317657.1 CDS mraW NC_007406.1 1136258 1137256 D S-adenosyl-methyltransferase MraW 1136258..1137256 Nitrobacter winogradskyi Nb-255 3675785 YP_317658.1 CDS Nwi_1044 NC_007406.1 1137261 1137641 D hypothetical protein 1137261..1137641 Nitrobacter winogradskyi Nb-255 3675786 YP_317659.1 CDS Nwi_1045 NC_007406.1 1137638 1139377 D penicillin-binding protein, transpeptidase 1137638..1139377 Nitrobacter winogradskyi Nb-255 3675787 YP_317660.1 CDS murE NC_007406.1 1139459 1140916 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1139459..1140916 Nitrobacter winogradskyi Nb-255 3675788 YP_317661.1 CDS Nwi_1047 NC_007406.1 1140913 1142343 D UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase 1140913..1142343 Nitrobacter winogradskyi Nb-255 3674870 YP_317662.1 CDS mraY NC_007406.1 1142425 1143531 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1142425..1143531 Nitrobacter winogradskyi Nb-255 3674871 YP_317663.1 CDS murD NC_007406.1 1143542 1144942 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1143542..1144942 Nitrobacter winogradskyi Nb-255 3674872 YP_317664.1 CDS Nwi_1050 NC_007406.1 1145177 1146328 D cell cycle protein 1145177..1146328 Nitrobacter winogradskyi Nb-255 3677009 YP_317665.1 CDS murG NC_007406.1 1146332 1147483 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 1146332..1147483 Nitrobacter winogradskyi Nb-255 3677010 YP_317666.1 CDS murC NC_007406.1 1147587 1148990 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1147587..1148990 Nitrobacter winogradskyi Nb-255 3677011 YP_317667.1 CDS Nwi_1053 NC_007406.1 1148996 1149328 R excinuclease ABC subunit C complement(1148996..1149328) Nitrobacter winogradskyi Nb-255 3677012 YP_317668.1 CDS murB NC_007406.1 1149463 1150380 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1149463..1150380 Nitrobacter winogradskyi Nb-255 3677013 YP_317669.1 CDS Nwi_1055 NC_007406.1 1150386 1151378 D D-alanine--D-alanine ligase 1150386..1151378 Nitrobacter winogradskyi Nb-255 3677014 YP_317670.1 CDS Nwi_1056 NC_007406.1 1151763 1152785 D cell division protein FtsQ 1151763..1152785 Nitrobacter winogradskyi Nb-255 3677015 YP_317671.1 CDS Nwi_1057 NC_007406.1 1152782 1154104 D cell division protein FtsA 1152782..1154104 Nitrobacter winogradskyi Nb-255 3677016 YP_317672.1 CDS Nwi_1058 NC_007406.1 1154195 1156006 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1154195..1156006 Nitrobacter winogradskyi Nb-255 3677017 YP_317673.1 CDS lpxC NC_007406.1 1156343 1157299 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1156343..1157299 Nitrobacter winogradskyi Nb-255 3677018 YP_317674.1 CDS Nwi_1060 NC_007406.1 1157771 1158667 D lipoprotein 1157771..1158667 Nitrobacter winogradskyi Nb-255 3677019 YP_317675.1 CDS Nwi_1061 NC_007406.1 1158812 1160497 D DNA repair protein RecN 1158812..1160497 Nitrobacter winogradskyi Nb-255 3675714 YP_317676.1 CDS Nwi_1062 NC_007406.1 1160504 1162654 D NAD-dependent DNA ligase 1160504..1162654 Nitrobacter winogradskyi Nb-255 3675715 YP_317677.1 CDS Nwi_1063 NC_007406.1 1162686 1163390 R fumarylacetoacetate (FAA) hydrolase complement(1162686..1163390) Nitrobacter winogradskyi Nb-255 3676439 YP_317678.1 CDS Nwi_1064 NC_007406.1 1163558 1165366 R ABC transporter complement(1163558..1165366) Nitrobacter winogradskyi Nb-255 3676440 YP_317679.1 CDS Nwi_1065 NC_007406.1 1165486 1166496 R UDP-glucose 4-epimerase complement(1165486..1166496) Nitrobacter winogradskyi Nb-255 3676441 YP_317680.1 CDS Nwi_1066 NC_007406.1 1166681 1167625 D lipopolysaccharide heptosyltransferase I 1166681..1167625 Nitrobacter winogradskyi Nb-255 3676442 YP_317681.1 CDS Nwi_1067 NC_007406.1 1167622 1168176 R histidinol-phosphate phosphatase complement(1167622..1168176) Nitrobacter winogradskyi Nb-255 3674264 YP_317682.1 CDS Nwi_1068 NC_007406.1 1168173 1168766 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(1168173..1168766) Nitrobacter winogradskyi Nb-255 3674265 YP_317683.1 CDS Nwi_1069 NC_007406.1 1168837 1169907 R lipopolysaccharide heptosyltransferase II complement(1168837..1169907) Nitrobacter winogradskyi Nb-255 3674266 YP_317684.1 CDS Nwi_1070 NC_007406.1 1170260 1171240 D ADP-L-glycero-D-manno-heptose-6-epimerase 1170260..1171240 Nitrobacter winogradskyi Nb-255 3674267 YP_317685.1 CDS Nwi_1071 NC_007406.1 1171471 1172937 D bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 1171471..1172937 Nitrobacter winogradskyi Nb-255 3674268 YP_317686.1 CDS Nwi_1072 NC_007406.1 1173006 1174949 D NAD-dependent epimerase/dehydratase 1173006..1174949 Nitrobacter winogradskyi Nb-255 3674269 YP_317687.1 CDS Nwi_1073 NC_007406.1 1174959 1175951 R hypothetical protein complement(1174959..1175951) Nitrobacter winogradskyi Nb-255 3674270 YP_317688.1 CDS Nwi_1074 NC_007406.1 1176200 1177219 D NAD-dependent epimerase/dehydratase 1176200..1177219 Nitrobacter winogradskyi Nb-255 3674271 YP_317689.1 CDS Nwi_1075 NC_007406.1 1177389 1178801 D mannose-1-phosphate guanylyltransferase 1177389..1178801 Nitrobacter winogradskyi Nb-255 3674272 YP_317690.1 CDS Nwi_1076 NC_007406.1 1179022 1180059 D oxidoreductase 1179022..1180059 Nitrobacter winogradskyi Nb-255 3674273 YP_317691.1 CDS Nwi_1077 NC_007406.1 1180075 1181223 D DegT/DnrJ/EryC1/StrS aminotransferase 1180075..1181223 Nitrobacter winogradskyi Nb-255 3674274 YP_317692.1 CDS Nwi_1078 NC_007406.1 1181267 1182793 D virulence factor MVIN-like 1181267..1182793 Nitrobacter winogradskyi Nb-255 3674275 YP_317693.1 CDS Nwi_1079 NC_007406.1 1182912 1185203 D aldehyde oxidase 1182912..1185203 Nitrobacter winogradskyi Nb-255 3674276 YP_317694.1 CDS Nwi_1080 NC_007406.1 1185223 1185648 R hypothetical protein complement(1185223..1185648) Nitrobacter winogradskyi Nb-255 3674277 YP_317695.1 CDS Nwi_1081 NC_007406.1 1185725 1185970 R transcriptional regulator complement(1185725..1185970) Nitrobacter winogradskyi Nb-255 3674278 YP_317696.1 CDS Nwi_1082 NC_007406.1 1186219 1187034 D phosphomethylpyrimidine kinase 1186219..1187034 Nitrobacter winogradskyi Nb-255 3676419 YP_317697.1 CDS Nwi_1083 NC_007406.1 1187163 1187999 D metallophosphoesterase 1187163..1187999 Nitrobacter winogradskyi Nb-255 3676420 YP_317698.1 CDS Nwi_1084 NC_007406.1 1188146 1189303 R hypothetical protein complement(1188146..1189303) Nitrobacter winogradskyi Nb-255 3676421 YP_317699.1 CDS Nwi_1085 NC_007406.1 1189448 1190449 R mandelate racemase complement(1189448..1190449) Nitrobacter winogradskyi Nb-255 3676422 YP_317700.1 CDS Nwi_1086 NC_007406.1 1190741 1196140 R hypothetical protein complement(1190741..1196140) Nitrobacter winogradskyi Nb-255 3676423 YP_317701.1 CDS Nwi_1087 NC_007406.1 1196543 1196890 D Hpt protein 1196543..1196890 Nitrobacter winogradskyi Nb-255 3676424 YP_317702.1 CDS Nwi_1088 NC_007406.1 1197000 1197320 D ferredoxin 1197000..1197320 Nitrobacter winogradskyi Nb-255 3676425 YP_317703.1 CDS Nwi_1089 NC_007406.1 1197582 1198610 D FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1197582..1198610 Nitrobacter winogradskyi Nb-255 3676426 YP_317704.1 CDS Nwi_1090 NC_007406.1 1198649 1200673 R hypothetical protein complement(1198649..1200673) Nitrobacter winogradskyi Nb-255 3676427 YP_317705.1 CDS Nwi_1091 NC_007406.1 1200804 1201934 R hypothetical protein complement(1200804..1201934) Nitrobacter winogradskyi Nb-255 3676428 YP_317706.1 CDS Nwi_1092 NC_007406.1 1202534 1202971 R hypothetical protein complement(1202534..1202971) Nitrobacter winogradskyi Nb-255 3676429 YP_317707.1 CDS Nwi_1093 NC_007406.1 1203192 1203779 D hypothetical protein 1203192..1203779 Nitrobacter winogradskyi Nb-255 3676430 YP_317708.1 CDS Nwi_1094 NC_007406.1 1203802 1204353 R phosphoglycerate/bisphosphoglycerate mutase complement(1203802..1204353) Nitrobacter winogradskyi Nb-255 3676431 YP_317709.1 CDS Nwi_1095 NC_007406.1 1204501 1205133 R transposase, IS4 complement(1204501..1205133) Nitrobacter winogradskyi Nb-255 3676432 YP_317710.1 CDS Nwi_1096 NC_007406.1 1204905 1205270 R ISBm1, transposase orfA complement(1204905..1205270) Nitrobacter winogradskyi Nb-255 3676433 YP_317711.1 CDS Nwi_1097 NC_007406.1 1205403 1206353 D integrase catalytic subunit 1205403..1206353 Nitrobacter winogradskyi Nb-255 3676434 YP_317712.1 CDS Nwi_1098 NC_007406.1 1206403 1207776 D FAD dependent oxidoreductase 1206403..1207776 Nitrobacter winogradskyi Nb-255 3676435 YP_317713.1 CDS Nwi_1099 NC_007406.1 1207965 1209806 D flagellar basal body rod protein, FlaE 1207965..1209806 Nitrobacter winogradskyi Nb-255 3676436 YP_317714.1 CDS Nwi_1100 NC_007406.1 1209848 1211716 D hypothetical protein 1209848..1211716 Nitrobacter winogradskyi Nb-255 3676437 YP_317715.1 CDS Nwi_1101 NC_007406.1 1211738 1213243 D hypothetical protein 1211738..1213243 Nitrobacter winogradskyi Nb-255 3676438 YP_317716.1 CDS Nwi_1102 NC_007406.1 1213415 1214893 D pyridoxal-dependent decarboxylase 1213415..1214893 Nitrobacter winogradskyi Nb-255 3677286 YP_317717.1 CDS flbT NC_007406.1 1215015 1215443 R post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA; Bradyrhizobium has one thick and several thin flagella, the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT complement(1215015..1215443) Nitrobacter winogradskyi Nb-255 3677287 YP_317718.1 CDS Nwi_1104 NC_007406.1 1215795 1217366 D hypothetical protein 1215795..1217366 Nitrobacter winogradskyi Nb-255 3677288 YP_317719.1 CDS Nwi_1105 NC_007406.1 1217759 1219369 D hypothetical protein 1217759..1219369 Nitrobacter winogradskyi Nb-255 3677289 YP_317720.1 CDS flaF NC_007406.1 1219623 1219988 D acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar biosynthesis regulatory protein FlaF 1219623..1219988 Nitrobacter winogradskyi Nb-255 3677290 YP_317721.1 CDS Nwi_1107 NC_007406.1 1220018 1220383 D hypothetical protein 1220018..1220383 Nitrobacter winogradskyi Nb-255 3677291 YP_317722.1 CDS Nwi_1108 NC_007406.1 1220599 1220964 R hypothetical protein complement(1220599..1220964) Nitrobacter winogradskyi Nb-255 3677292 YP_317723.1 CDS Nwi_1109 NC_007406.1 1221145 1221636 R hypothetical protein complement(1221145..1221636) Nitrobacter winogradskyi Nb-255 3677293 YP_317724.1 CDS Nwi_1110 NC_007406.1 1221633 1222022 R chemotactic signal-response protein CheL complement(1221633..1222022) Nitrobacter winogradskyi Nb-255 3677294 YP_317725.1 CDS flgI NC_007406.1 1222022 1223146 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA complement(1222022..1223146) Nitrobacter winogradskyi Nb-255 3677295 YP_317726.1 CDS fliX NC_007406.1 1223478 1223891 D regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present; flagellar assembly regulator FliX 1223478..1223891 Nitrobacter winogradskyi Nb-255 3677296 YP_317727.1 CDS Nwi_1113 NC_007406.1 1224098 1224508 D DnaK suppressor protein DksA 1224098..1224508 Nitrobacter winogradskyi Nb-255 3677297 YP_317728.1 CDS Nwi_1114 NC_007406.1 1224565 1224900 R hypothetical protein complement(1224565..1224900) Nitrobacter winogradskyi Nb-255 3677298 YP_317729.1 CDS Nwi_1115 NC_007406.1 1224984 1225472 R heat shock protein Hsp20 complement(1224984..1225472) Nitrobacter winogradskyi Nb-255 3677299 YP_317730.1 CDS Nwi_1116 NC_007406.1 1225555 1226013 R heat shock protein Hsp20 complement(1225555..1226013) Nitrobacter winogradskyi Nb-255 3677300 YP_317731.1 CDS Nwi_1117 NC_007406.1 1226303 1228168 R patatin complement(1226303..1228168) Nitrobacter winogradskyi Nb-255 3677301 YP_317732.1 CDS Nwi_1118 NC_007406.1 1228284 1228649 R hypothetical protein complement(1228284..1228649) Nitrobacter winogradskyi Nb-255 3677302 YP_317733.1 CDS flgH NC_007406.1 1228830 1229588 R part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein complement(1228830..1229588) Nitrobacter winogradskyi Nb-255 3677303 YP_317734.1 CDS flgA NC_007406.1 1229594 1230736 R required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA complement(1229594..1230736) Nitrobacter winogradskyi Nb-255 3677304 YP_317735.1 CDS flgG NC_007406.1 1230775 1231563 R makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG complement(1230775..1231563) Nitrobacter winogradskyi Nb-255 3674463 YP_317736.1 CDS flgF NC_007406.1 1231577 1232344 R FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum; flagellar basal body rod protein FlgF complement(1231577..1232344) Nitrobacter winogradskyi Nb-255 3674464 YP_317737.1 CDS fliL NC_007406.1 1232863 1233351 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body protein FliL 1232863..1233351 Nitrobacter winogradskyi Nb-255 3674465 YP_317738.1 CDS fliM NC_007406.1 1233586 1234791 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM 1233586..1234791 Nitrobacter winogradskyi Nb-255 3674466 YP_317739.1 CDS Nwi_1125 NC_007406.1 1234788 1235222 D hypothetical protein 1234788..1235222 Nitrobacter winogradskyi Nb-255 3674467 YP_317740.1 CDS Nwi_1126 NC_007406.1 1235219 1236022 D hypothetical protein 1235219..1236022 Nitrobacter winogradskyi Nb-255 3674468 YP_317741.1 CDS Nwi_1127 NC_007406.1 1236213 1239956 D hypothetical protein 1236213..1239956 Nitrobacter winogradskyi Nb-255 3674469 YP_317742.1 CDS Nwi_1128 NC_007406.1 1240070 1240312 R hypothetical protein complement(1240070..1240312) Nitrobacter winogradskyi Nb-255 3674470 YP_317743.1 CDS Nwi_1129 NC_007406.1 1240837 1242381 D hypothetical protein 1240837..1242381 Nitrobacter winogradskyi Nb-255 3674471 YP_317744.1 CDS fliP NC_007406.1 1242465 1243220 R FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP complement(1242465..1243220) Nitrobacter winogradskyi Nb-255 3674472 YP_317745.1 CDS Nwi_1131 NC_007406.1 1243217 1244074 R hypothetical protein complement(1243217..1244074) Nitrobacter winogradskyi Nb-255 3674473 YP_317746.1 CDS flgB NC_007406.1 1244527 1244934 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar basal-body rod protein FlgB 1244527..1244934 Nitrobacter winogradskyi Nb-255 3674474 YP_317747.1 CDS flgC NC_007406.1 1244964 1245389 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1244964..1245389 Nitrobacter winogradskyi Nb-255 3674475 YP_317748.1 CDS fliE NC_007406.1 1245405 1245716 D forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagella; flagellar hook-basal body protein FliE 1245405..1245716 Nitrobacter winogradskyi Nb-255 3674476 YP_317749.1 CDS fliQ NC_007406.1 1245829 1246092 D FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar biosynthesis protein FliQ 1245829..1246092 Nitrobacter winogradskyi Nb-255 3674477 YP_317750.1 CDS fliR NC_007406.1 1246109 1246879 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1246109..1246879 Nitrobacter winogradskyi Nb-255 3674478 YP_317751.1 CDS flhB NC_007406.1 1246889 1247968 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1246889..1247968 Nitrobacter winogradskyi Nb-255 3674479 YP_317752.1 CDS Nwi_1138 NC_007406.1 1248011 1250677 D Signal transduction histidine kinase 1248011..1250677 Nitrobacter winogradskyi Nb-255 3674480 YP_317753.1 CDS Nwi_1139 NC_007406.1 1250831 1251796 R hypothetical protein complement(1250831..1251796) Nitrobacter winogradskyi Nb-255 3674481 YP_317754.1 CDS Nwi_1140 NC_007406.1 1251932 1253149 R phage integrase complement(1251932..1253149) Nitrobacter winogradskyi Nb-255 3674482 YP_317755.1 CDS Nwi_1141 NC_007406.1 1253406 1253930 R hypothetical protein complement(1253406..1253930) Nitrobacter winogradskyi Nb-255 3674737 YP_317756.1 CDS Nwi_1142 NC_007406.1 1254217 1254441 R hypothetical protein complement(1254217..1254441) Nitrobacter winogradskyi Nb-255 3674738 YP_317757.1 CDS Nwi_1143 NC_007406.1 1254585 1255565 R Fis family transcriptional regulator complement(1254585..1255565) Nitrobacter winogradskyi Nb-255 3674739 YP_317758.1 CDS Nwi_1144 NC_007406.1 1255562 1255936 R transposase IS3/IS911 complement(1255562..1255936) Nitrobacter winogradskyi Nb-255 3674740 YP_317759.1 CDS Nwi_1145 NC_007406.1 1256286 1256774 D hypothetical protein 1256286..1256774 Nitrobacter winogradskyi Nb-255 3674741 YP_317760.1 CDS Nwi_1146 NC_007406.1 1257687 1257908 R hypothetical protein complement(1257687..1257908) Nitrobacter winogradskyi Nb-255 3674742 YP_317761.1 CDS Nwi_1147 NC_007406.1 1258478 1259323 D hypothetical protein 1258478..1259323 Nitrobacter winogradskyi Nb-255 3674743 YP_317762.1 CDS Nwi_1148 NC_007406.1 1259347 1259925 R hypothetical protein complement(1259347..1259925) Nitrobacter winogradskyi Nb-255 3674744 YP_317763.1 CDS Nwi_1149 NC_007406.1 1259922 1260500 R hypothetical protein complement(1259922..1260500) Nitrobacter winogradskyi Nb-255 3674745 YP_317764.1 CDS Nwi_1150 NC_007406.1 1260594 1262873 R penicillin-binding protein 1A complement(1260594..1262873) Nitrobacter winogradskyi Nb-255 3674746 YP_317765.1 CDS Nwi_1151 NC_007406.1 1263057 1263698 D hypothetical protein 1263057..1263698 Nitrobacter winogradskyi Nb-255 3674747 YP_317766.1 CDS Nwi_1152 NC_007406.1 1263841 1265391 D major facilitator superfamily transporter 1263841..1265391 Nitrobacter winogradskyi Nb-255 3674748 YP_317767.1 CDS Nwi_1153 NC_007406.1 1265685 1265858 D Flp/Fap pilin component 1265685..1265858 Nitrobacter winogradskyi Nb-255 3674749 YP_317768.1 CDS Nwi_1154 NC_007406.1 1266020 1266652 R hypothetical protein complement(1266020..1266652) Nitrobacter winogradskyi Nb-255 3674750 YP_317769.1 CDS Nwi_1155 NC_007406.1 1266719 1267186 R hypothetical protein complement(1266719..1267186) Nitrobacter winogradskyi Nb-255 3674751 YP_317770.1 CDS Nwi_1156 NC_007406.1 1267240 1268178 R ISSpo8, transposase complement(1267240..1268178) Nitrobacter winogradskyi Nb-255 3674752 YP_317771.1 CDS Nwi_1157 NC_007406.1 1268863 1269369 R ISRm2011-2 transposase complement(1268863..1269369) Nitrobacter winogradskyi Nb-255 3674753 YP_317772.1 CDS Nwi_1158 NC_007406.1 1269456 1269806 R transposase complement(1269456..1269806) Nitrobacter winogradskyi Nb-255 3674754 YP_317773.1 CDS Nwi_1159 NC_007406.1 1270401 1271156 D hypothetical protein 1270401..1271156 Nitrobacter winogradskyi Nb-255 3674755 YP_317774.1 CDS Nwi_1160 NC_007406.1 1271149 1272417 D hypothetical protein 1271149..1272417 Nitrobacter winogradskyi Nb-255 3675795 YP_317775.1 CDS Nwi_1161 NC_007406.1 1272467 1273642 D Phage portal protein, HK97 1272467..1273642 Nitrobacter winogradskyi Nb-255 3675796 YP_317776.1 CDS Nwi_1162 NC_007406.1 1273608 1273898 D hypothetical protein 1273608..1273898 Nitrobacter winogradskyi Nb-255 3675797 YP_317777.1 CDS Nwi_1163 NC_007406.1 1274169 1274816 D peptidase U35 1274169..1274816 Nitrobacter winogradskyi Nb-255 3675798 YP_317778.1 CDS Nwi_1164 NC_007406.1 1274816 1275133 D hypothetical protein 1274816..1275133 Nitrobacter winogradskyi Nb-255 3675799 YP_317779.1 CDS Nwi_1165 NC_007406.1 1275495 1275734 D hypothetical protein 1275495..1275734 Nitrobacter winogradskyi Nb-255 3675800 YP_317780.1 CDS Nwi_1166 NC_007406.1 1275783 1276109 R hypothetical protein complement(1275783..1276109) Nitrobacter winogradskyi Nb-255 3675801 YP_317781.1 CDS Nwi_1167 NC_007406.1 1276327 1277580 D Phage major capsid protein, HK97 1276327..1277580 Nitrobacter winogradskyi Nb-255 3675802 YP_317782.1 CDS Nwi_1168 NC_007406.1 1277736 1278488 D hypothetical protein 1277736..1278488 Nitrobacter winogradskyi Nb-255 3675803 YP_317783.1 CDS Nwi_1169 NC_007406.1 1278527 1278898 D hypothetical protein 1278527..1278898 Nitrobacter winogradskyi Nb-255 3675804 YP_317784.1 CDS Nwi_1170 NC_007406.1 1279164 1279442 D hypothetical protein 1279164..1279442 Nitrobacter winogradskyi Nb-255 3675805 YP_317785.1 CDS Nwi_1171 NC_007406.1 1279548 1280315 R peptidase S1 and S6, chymotrypsin/Hap complement(1279548..1280315) Nitrobacter winogradskyi Nb-255 3675806 YP_317786.1 CDS Nwi_1172 NC_007406.1 1280428 1280991 D hypothetical protein 1280428..1280991 Nitrobacter winogradskyi Nb-255 3675807 YP_317787.1 CDS Nwi_1173 NC_007406.1 1281024 1281434 D gene transfer agent (GTA) like protein 1281024..1281434 Nitrobacter winogradskyi Nb-255 3675808 YP_317788.1 CDS Nwi_1174 NC_007406.1 1281451 1281858 D Phage major tail protein, TP901-1 1281451..1281858 Nitrobacter winogradskyi Nb-255 3675809 YP_317789.1 CDS Nwi_1175 NC_007406.1 1281874 1282194 D gene transfer agent (GTA) like protein 1281874..1282194 Nitrobacter winogradskyi Nb-255 3675810 YP_317790.1 CDS Nwi_1176 NC_007406.1 1282191 1282403 D hypothetical protein 1282191..1282403 Nitrobacter winogradskyi Nb-255 3675811 YP_317791.1 CDS Nwi_1177 NC_007406.1 1282396 1282980 D gene transfer agent (GTA) like protein 1282396..1282980 Nitrobacter winogradskyi Nb-255 3675812 YP_317792.1 CDS Nwi_1178 NC_007406.1 1282984 1283625 D hypothetical protein 1282984..1283625 Nitrobacter winogradskyi Nb-255 3675813 YP_317793.1 CDS Nwi_1179 NC_007406.1 1283622 1284515 D hypothetical protein 1283622..1284515 Nitrobacter winogradskyi Nb-255 3675814 YP_317794.1 CDS Nwi_1180 NC_007406.1 1284527 1284973 D phage cell wall peptidase, NlpC/P60 1284527..1284973 Nitrobacter winogradskyi Nb-255 3676406 YP_317795.1 CDS Nwi_1181 NC_007406.1 1284973 1288830 D hypothetical protein 1284973..1288830 Nitrobacter winogradskyi Nb-255 3676407 YP_317796.1 CDS Nwi_1182 NC_007406.1 1288837 1290759 D hypothetical protein 1288837..1290759 Nitrobacter winogradskyi Nb-255 3676408 YP_317797.1 CDS Nwi_1183 NC_007406.1 1290907 1291407 D hypothetical protein 1290907..1291407 Nitrobacter winogradskyi Nb-255 3676409 YP_317798.1 CDS Nwi_1184 NC_007406.1 1291463 1291702 D hypothetical protein 1291463..1291702 Nitrobacter winogradskyi Nb-255 3676410 YP_317799.1 CDS Nwi_1185 NC_007406.1 1291727 1292119 D hypothetical protein 1291727..1292119 Nitrobacter winogradskyi Nb-255 3676411 YP_317800.1 CDS Nwi_1186 NC_007406.1 1292123 1292374 D hypothetical protein 1292123..1292374 Nitrobacter winogradskyi Nb-255 3676412 YP_317801.1 CDS Nwi_1187 NC_007406.1 1292649 1293320 D two component transcriptional regulator 1292649..1293320 Nitrobacter winogradskyi Nb-255 3676413 YP_317802.1 CDS Nwi_1188 NC_007406.1 1293310 1294707 D Signal transduction histidine kinase 1293310..1294707 Nitrobacter winogradskyi Nb-255 3676414 YP_317803.1 CDS Nwi_1189 NC_007406.1 1294814 1295242 D LipA a lipoprotein 1294814..1295242 Nitrobacter winogradskyi Nb-255 3676415 YP_317804.1 CDS Nwi_1190 NC_007406.1 1295501 1296892 D hypothetical protein 1295501..1296892 Nitrobacter winogradskyi Nb-255 3674418 YP_317805.1 CDS Nwi_1191 NC_007406.1 1297055 1298158 D cytochrome c-type biogenesis protein cycH / CcmH 1297055..1298158 Nitrobacter winogradskyi Nb-255 3674419 YP_317806.1 CDS Nwi_1192 NC_007406.1 1298193 1298681 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 1298193..1298681 Nitrobacter winogradskyi Nb-255 3674420 YP_317807.1 CDS Nwi_1193 NC_007406.1 1298678 1300663 D cytochrome c-type biogenesis protein CcmF 1298678..1300663 Nitrobacter winogradskyi Nb-255 3674421 YP_317808.1 CDS Nwi_1194 NC_007406.1 1300671 1301234 D cytochrome C biogenesis protein 1300671..1301234 Nitrobacter winogradskyi Nb-255 3674422 YP_317809.1 CDS Nwi_1195 NC_007406.1 1301419 1302969 D peptidase S1C, Do 1301419..1302969 Nitrobacter winogradskyi Nb-255 3674423 YP_317810.1 CDS Nwi_1196 NC_007406.1 1303301 1304017 D two-component transcriptional regulator 1303301..1304017 Nitrobacter winogradskyi Nb-255 3674424 YP_317811.1 CDS Nwi_1197 NC_007406.1 1304377 1304529 R hypothetical protein complement(1304377..1304529) Nitrobacter winogradskyi Nb-255 3674425 YP_317812.1 CDS Nwi_1198 NC_007406.1 1304970 1306430 D Signal transduction histidine kinase 1304970..1306430 Nitrobacter winogradskyi Nb-255 3674426 YP_317813.1 CDS Nwi_1199 NC_007406.1 1306427 1309390 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 1306427..1309390 Nitrobacter winogradskyi Nb-255 3675658 YP_317814.1 CDS Nwi_1200 NC_007406.1 1309365 1311704 R Signal transduction histidine kinase complement(1309365..1311704) Nitrobacter winogradskyi Nb-255 3675659 YP_317815.1 CDS Nwi_1201 NC_007406.1 1311903 1313285 R cation efflux protein complement(1311903..1313285) Nitrobacter winogradskyi Nb-255 3675660 YP_317816.1 CDS Nwi_1202 NC_007406.1 1313514 1313870 R hypothetical protein complement(1313514..1313870) Nitrobacter winogradskyi Nb-255 3675661 YP_317817.1 CDS Nwi_1203 NC_007406.1 1314133 1314432 D histone-like DNA-binding protein 1314133..1314432 Nitrobacter winogradskyi Nb-255 3675662 YP_317818.1 CDS Nwi_1204 NC_007406.1 1314540 1317035 R glycogen/starch/alpha-glucan phosphorylase complement(1314540..1317035) Nitrobacter winogradskyi Nb-255 3675663 YP_317819.1 CDS Nwi_1205 NC_007406.1 1317503 1319287 R alpha amylase complement(1317503..1319287) Nitrobacter winogradskyi Nb-255 3675664 YP_317820.1 CDS Nwi_1206 NC_007406.1 1319284 1321362 R glycogen debranching protein GlgX complement(1319284..1321362) Nitrobacter winogradskyi Nb-255 3675665 YP_317821.1 CDS Nwi_1207 NC_007406.1 1321359 1323509 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein complement(1321359..1323509) Nitrobacter winogradskyi Nb-255 3675666 YP_317822.1 CDS Nwi_1208 NC_007406.1 1323506 1326790 R alpha amylase complement(1323506..1326790) Nitrobacter winogradskyi Nb-255 3675667 YP_317823.1 CDS Nwi_1209 NC_007406.1 1326800 1328773 R alpha amylase complement(1326800..1328773) Nitrobacter winogradskyi Nb-255 3675668 YP_317824.1 CDS Nwi_1210 NC_007406.1 1328903 1330894 D glycoside hydrolase 1328903..1330894 Nitrobacter winogradskyi Nb-255 3675669 YP_317825.1 CDS Nwi_1211 NC_007406.1 1330967 1331479 R hypothetical protein complement(1330967..1331479) Nitrobacter winogradskyi Nb-255 3675670 YP_317826.1 CDS Nwi_1212 NC_007406.1 1331618 1333228 R Signal transduction histidine kinase complement(1331618..1333228) Nitrobacter winogradskyi Nb-255 3675671 YP_317827.1 CDS Nwi_1213 NC_007406.1 1333399 1334268 R 6-phosphogluconate dehydrogenase complement(1333399..1334268) Nitrobacter winogradskyi Nb-255 3675672 YP_317828.1 CDS Nwi_1214 NC_007406.1 1334487 1334876 D glyoxalase/bleomycin resistance protein/dioxygenase 1334487..1334876 Nitrobacter winogradskyi Nb-255 3675673 YP_317829.1 CDS Nwi_1215 NC_007406.1 1335028 1336167 D chromosome partitioning ATPase 1335028..1336167 Nitrobacter winogradskyi Nb-255 3675674 YP_317830.1 CDS Nwi_1216 NC_007406.1 1336464 1337552 D TRAP dicarboxylate transporter- DctP subunit 1336464..1337552 Nitrobacter winogradskyi Nb-255 3675675 YP_317831.1 CDS Nwi_1217 NC_007406.1 1337810 1339420 R TRAP dicarboxylate transporter subunit DctM complement(1337810..1339420) Nitrobacter winogradskyi Nb-255 3675676 YP_317832.1 CDS Nwi_1218 NC_007406.1 1339417 1339956 R tripartite ATP-independent periplasmic transporter DctQ component complement(1339417..1339956) Nitrobacter winogradskyi Nb-255 3675677 YP_317833.1 CDS moaA NC_007406.1 1340455 1341486 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1340455..1341486) Nitrobacter winogradskyi Nb-255 3676100 YP_317834.1 CDS Nwi_1220 NC_007406.1 1341745 1342422 R catalyzes the formation of glycolate and phosphate from 2-phosphoglycolate; phosphoglycolate phosphatase complement(1341745..1342422) Nitrobacter winogradskyi Nb-255 3676101 YP_317835.1 CDS Nwi_1221 NC_007406.1 1342784 1343482 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1342784..1343482 Nitrobacter winogradskyi Nb-255 3676102 YP_317836.1 CDS Nwi_1222 NC_007406.1 1343505 1344029 D hypothetical protein 1343505..1344029 Nitrobacter winogradskyi Nb-255 3676103 YP_317837.1 CDS Nwi_1223 NC_007406.1 1344048 1345430 D glutathione reductase 1344048..1345430 Nitrobacter winogradskyi Nb-255 3676104 YP_317838.1 CDS Nwi_1224 NC_007406.1 1345798 1347186 D DAHP synthetase, class II 1345798..1347186 Nitrobacter winogradskyi Nb-255 3676105 YP_317839.1 CDS nadE NC_007406.1 1347381 1349132 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1347381..1349132 Nitrobacter winogradskyi Nb-255 3676106 YP_317840.1 CDS Nwi_1226 NC_007406.1 1349205 1350296 R hypothetical protein complement(1349205..1350296) Nitrobacter winogradskyi Nb-255 3676107 YP_317841.1 CDS Nwi_1227 NC_007406.1 1350592 1350912 R hypothetical protein complement(1350592..1350912) Nitrobacter winogradskyi Nb-255 3676108 YP_317842.1 CDS cysS NC_007406.1 1351226 1352659 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1351226..1352659 Nitrobacter winogradskyi Nb-255 3676109 YP_317843.1 CDS Nwi_1229 NC_007406.1 1352807 1353286 D hypothetical protein 1352807..1353286 Nitrobacter winogradskyi Nb-255 3676110 YP_317844.1 CDS Nwi_1230 NC_007406.1 1353291 1353791 D N-acetyltransferase 1353291..1353791 Nitrobacter winogradskyi Nb-255 3676111 YP_317845.1 CDS Nwi_1231 NC_007406.1 1353788 1355410 D catalyzes the formation of 2-isopropylmalate from 1-methyl-2-oxobutanoate and acetyl-CoA; alpha-isopropylmalate/homocitrate synthase transferase 1353788..1355410 Nitrobacter winogradskyi Nb-255 3676112 YP_317846.1 CDS Nwi_1232 NC_007406.1 1355411 1356016 R hypothetical protein complement(1355411..1356016) Nitrobacter winogradskyi Nb-255 3676113 YP_317847.1 CDS Nwi_1233 NC_007406.1 1356230 1358188 D ABC transporter 1356230..1358188 Nitrobacter winogradskyi Nb-255 3674458 YP_317848.1 CDS Nwi_1234 NC_007406.1 1358310 1359053 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1358310..1359053 Nitrobacter winogradskyi Nb-255 3674459 YP_317849.1 CDS Nwi_1235 NC_007406.1 1359152 1360030 D CDP-diacylglycerol--serine O-phosphatidyltransferase 1359152..1360030 Nitrobacter winogradskyi Nb-255 3674460 YP_317850.1 CDS Nwi_1236 NC_007406.1 1360307 1361080 D MotA/TolQ/ExbB proton channel 1360307..1361080 Nitrobacter winogradskyi Nb-255 3674461 YP_317851.1 CDS Nwi_1237 NC_007406.1 1361107 1361937 D OmpA/MotB protein 1361107..1361937 Nitrobacter winogradskyi Nb-255 3674462 YP_317852.1 CDS Nwi_1238 NC_007406.1 1362034 1363989 D K+ potassium transporter 1362034..1363989 Nitrobacter winogradskyi Nb-255 3676562 YP_317853.1 CDS Nwi_1239 NC_007406.1 1364148 1364561 D rhodanese-like protein 1364148..1364561 Nitrobacter winogradskyi Nb-255 3676563 YP_317854.1 CDS Nwi_1240 NC_007406.1 1364577 1365728 D hypothetical protein 1364577..1365728 Nitrobacter winogradskyi Nb-255 3676564 YP_317855.1 CDS Nwi_1241 NC_007406.1 1365734 1366849 D extracellular solute-binding protein 1365734..1366849 Nitrobacter winogradskyi Nb-255 3676565 YP_317856.1 CDS Nwi_1242 NC_007406.1 1366904 1367836 R Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase complement(1366904..1367836) Nitrobacter winogradskyi Nb-255 3676566 YP_317857.1 CDS Nwi_1243 NC_007406.1 1367929 1369209 R FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase complement(1367929..1369209) Nitrobacter winogradskyi Nb-255 3676567 YP_317858.1 CDS Nwi_1244 NC_007406.1 1369239 1370444 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(1369239..1370444) Nitrobacter winogradskyi Nb-255 3676568 YP_317859.1 CDS Nwi_1245 NC_007406.1 1370437 1370910 R (3R)-hydroxymyristoyl-ACP dehydratase complement(1370437..1370910) Nitrobacter winogradskyi Nb-255 3676569 YP_317860.1 CDS Nwi_1246 NC_007406.1 1370921 1371202 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(1370921..1371202) Nitrobacter winogradskyi Nb-255 3676570 YP_317861.1 CDS Nwi_1247 NC_007406.1 1371391 1371732 R hypothetical protein complement(1371391..1371732) Nitrobacter winogradskyi Nb-255 3676571 YP_317862.1 CDS Nwi_1248 NC_007406.1 1371841 1373694 R hypothetical protein complement(1371841..1373694) Nitrobacter winogradskyi Nb-255 3676572 YP_317863.1 CDS Nwi_1250 NC_007406.1 1378014 1379588 R resolvase complement(1378014..1379588) Nitrobacter winogradskyi Nb-255 3676575 YP_317864.1 CDS Nwi_1251 NC_007406.1 1379594 1380454 R hypothetical protein complement(1379594..1380454) Nitrobacter winogradskyi Nb-255 3676576 YP_317865.1 CDS Nwi_1252 NC_007406.1 1380464 1381384 R restriction endonuclease complement(1380464..1381384) Nitrobacter winogradskyi Nb-255 3676577 YP_317866.1 CDS Nwi_1253 NC_007406.1 1381386 1383179 R Type I restriction enzyme EcoAI specificity protein complement(1381386..1383179) Nitrobacter winogradskyi Nb-255 3676578 YP_317867.1 CDS Nwi_1254 NC_007406.1 1383176 1384630 R N-6 DNA methylase complement(1383176..1384630) Nitrobacter winogradskyi Nb-255 3676579 YP_317868.1 CDS Nwi_1255 NC_007406.1 1384634 1387069 R DEAD/DEAH box helicase complement(1384634..1387069) Nitrobacter winogradskyi Nb-255 3675678 YP_317869.1 CDS Nwi_1256 NC_007406.1 1387199 1387444 D hypothetical protein 1387199..1387444 Nitrobacter winogradskyi Nb-255 3675679 YP_317870.1 CDS Nwi_1257 NC_007406.1 1387679 1388575 R hypothetical protein complement(1387679..1388575) Nitrobacter winogradskyi Nb-255 3675680 YP_317871.1 CDS Nwi_1258 NC_007406.1 1388859 1390811 R hypothetical protein complement(1388859..1390811) Nitrobacter winogradskyi Nb-255 3675681 YP_317872.1 CDS Nwi_1259 NC_007406.1 1390808 1391698 R virulence-associated protein E complement(1390808..1391698) Nitrobacter winogradskyi Nb-255 3675682 YP_317873.1 CDS Nwi_1260 NC_007406.1 1391688 1391921 R hypothetical protein complement(1391688..1391921) Nitrobacter winogradskyi Nb-255 3675683 YP_317874.1 CDS Nwi_1261 NC_007406.1 1392260 1392526 R hypothetical protein complement(1392260..1392526) Nitrobacter winogradskyi Nb-255 3675684 YP_317875.1 CDS Nwi_1262 NC_007406.1 1392556 1393323 R hypothetical protein complement(1392556..1393323) Nitrobacter winogradskyi Nb-255 3675685 YP_317876.1 CDS Nwi_1263 NC_007406.1 1393368 1393721 R XRE family transcriptional regulator complement(1393368..1393721) Nitrobacter winogradskyi Nb-255 3675686 YP_317877.1 CDS Nwi_1264 NC_007406.1 1393812 1394252 R hypothetical protein complement(1393812..1394252) Nitrobacter winogradskyi Nb-255 3675687 YP_317878.1 CDS Nwi_1265 NC_007406.1 1394603 1397737 R acriflavin resistance protein complement(1394603..1397737) Nitrobacter winogradskyi Nb-255 3675688 YP_317879.1 CDS Nwi_1266 NC_007406.1 1397888 1399123 R secretion protein HlyD complement(1397888..1399123) Nitrobacter winogradskyi Nb-255 3675689 YP_317880.1 CDS Nwi_1267 NC_007406.1 1399602 1400558 D MotA/TolQ/ExbB proton channel 1399602..1400558 Nitrobacter winogradskyi Nb-255 3675690 YP_317881.1 CDS Nwi_1268 NC_007406.1 1400563 1401033 D biopolymer transport protein ExbD/TolR 1400563..1401033 Nitrobacter winogradskyi Nb-255 3675691 YP_317882.1 CDS Nwi_1269 NC_007406.1 1401035 1401826 D TonB protein 1401035..1401826 Nitrobacter winogradskyi Nb-255 3675692 YP_317883.1 CDS Nwi_1270 NC_007406.1 1401884 1402297 R hypothetical protein complement(1401884..1402297) Nitrobacter winogradskyi Nb-255 3675693 YP_317884.1 CDS Nwi_1271 NC_007406.1 1402348 1403031 R peptidase M50 complement(1402348..1403031) Nitrobacter winogradskyi Nb-255 3675694 YP_317885.1 CDS Nwi_1272 NC_007406.1 1403252 1404193 R transcription factor jumonji, jmjC complement(1403252..1404193) Nitrobacter winogradskyi Nb-255 3675695 YP_317886.1 CDS Nwi_1273 NC_007406.1 1404190 1405410 R hypothetical protein complement(1404190..1405410) Nitrobacter winogradskyi Nb-255 3675696 YP_317887.1 CDS Nwi_1274 NC_007406.1 1405861 1407318 D peptidase C14, caspase catalytic subunit p20 1405861..1407318 Nitrobacter winogradskyi Nb-255 3675697 YP_317888.1 CDS Nwi_1275 NC_007406.1 1407391 1407771 D hypothetical protein 1407391..1407771 Nitrobacter winogradskyi Nb-255 3675071 YP_317889.1 CDS Nwi_1276 NC_007406.1 1408519 1408935 D hypothetical protein 1408519..1408935 Nitrobacter winogradskyi Nb-255 3675072 YP_317890.1 CDS Nwi_1277 NC_007406.1 1409640 1409870 D hypothetical protein 1409640..1409870 Nitrobacter winogradskyi Nb-255 3675073 YP_317891.1 CDS Nwi_1278 NC_007406.1 1410836 1411714 D ISSpo3, transposase 1410836..1411714 Nitrobacter winogradskyi Nb-255 3675074 YP_317892.1 CDS Nwi_1279 NC_007406.1 1411753 1412427 R hypothetical protein complement(1411753..1412427) Nitrobacter winogradskyi Nb-255 3675075 YP_317893.1 CDS recA NC_007406.1 1412638 1413726 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1412638..1413726 Nitrobacter winogradskyi Nb-255 3675076 YP_317894.1 CDS Nwi_1281 NC_007406.1 1413844 1414266 R hypothetical protein complement(1413844..1414266) Nitrobacter winogradskyi Nb-255 3675077 YP_317895.1 CDS Nwi_1282 NC_007406.1 1414420 1414788 R transposase, IS4 complement(1414420..1414788) Nitrobacter winogradskyi Nb-255 3675078 YP_317896.1 CDS Nwi_1283 NC_007406.1 1414803 1415201 R transposase complement(1414803..1415201) Nitrobacter winogradskyi Nb-255 3675079 YP_317897.1 CDS Nwi_1284 NC_007406.1 1415326 1418190 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1415326..1418190) Nitrobacter winogradskyi Nb-255 3675080 YP_317898.1 CDS Nwi_1285 NC_007406.1 1418265 1418630 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1418265..1418630) Nitrobacter winogradskyi Nb-255 3675081 YP_317899.1 CDS gcvT NC_007406.1 1418640 1419791 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1418640..1419791) Nitrobacter winogradskyi Nb-255 3675082 YP_317900.1 CDS alaS NC_007406.1 1420243 1422918 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1420243..1422918 Nitrobacter winogradskyi Nb-255 3675083 YP_317901.1 CDS Nwi_1288 NC_007406.1 1422936 1423184 R hypothetical protein complement(1422936..1423184) Nitrobacter winogradskyi Nb-255 3675084 YP_317902.1 CDS Nwi_1289 NC_007406.1 1423630 1424004 D transposase 1423630..1424004 Nitrobacter winogradskyi Nb-255 3675085 YP_317903.1 CDS Nwi_1290 NC_007406.1 1424159 1424386 D IS4 family transposase 1424159..1424386 Nitrobacter winogradskyi Nb-255 3675086 YP_317904.1 CDS Nwi_1291 NC_007406.1 1424456 1425172 R ISRm2011-2 transposase complement(1424456..1425172) Nitrobacter winogradskyi Nb-255 3675087 YP_317905.1 CDS Nwi_1292 NC_007406.1 1425556 1425921 D ISBm1, transposase orfA 1425556..1425921 Nitrobacter winogradskyi Nb-255 3675088 YP_317906.1 CDS Nwi_1293 NC_007406.1 1426284 1427273 R integrase catalytic subunit complement(1426284..1427273) Nitrobacter winogradskyi Nb-255 3675089 YP_317907.1 CDS Nwi_1294 NC_007406.1 1428024 1429235 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1428024..1429235) Nitrobacter winogradskyi Nb-255 3674794 YP_317908.1 CDS Nwi_1295 NC_007406.1 1429543 1430754 D RNA methyl transferase TrmH 1429543..1430754 Nitrobacter winogradskyi Nb-255 3674795 YP_317909.1 CDS Nwi_1296 NC_007406.1 1430821 1431771 R integrase catalytic subunit complement(1430821..1431771) Nitrobacter winogradskyi Nb-255 3674796 YP_317910.1 CDS Nwi_1297 NC_007406.1 1432233 1432598 R ISBm1, transposase orfA complement(1432233..1432598) Nitrobacter winogradskyi Nb-255 3674797 YP_317911.1 CDS Nwi_1298 NC_007406.1 1433530 1433859 D transposase IS3/IS911 1433530..1433859 Nitrobacter winogradskyi Nb-255 3674798 YP_317912.1 CDS Nwi_1299 NC_007406.1 1433856 1434836 D Fis family transcriptional regulator 1433856..1434836 Nitrobacter winogradskyi Nb-255 3674799 YP_317913.1 CDS Nwi_1300 NC_007406.1 1434849 1435259 D hypothetical protein 1434849..1435259 Nitrobacter winogradskyi Nb-255 3674800 YP_317914.1 CDS Nwi_1301 NC_007406.1 1435334 1435912 R hypothetical protein complement(1435334..1435912) Nitrobacter winogradskyi Nb-255 3674801 YP_317915.1 CDS Nwi_1302 NC_007406.1 1436341 1436829 D catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase 1436341..1436829 Nitrobacter winogradskyi Nb-255 3674802 YP_317916.1 CDS Nwi_1303 NC_007406.1 1437063 1437389 R hypothetical protein complement(1437063..1437389) Nitrobacter winogradskyi Nb-255 3674803 YP_317917.2 CDS Nwi_1304 NC_007406.1 1437734 1438501 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1437734..1438501 Nitrobacter winogradskyi Nb-255 3674804 YP_317918.1 CDS Nwi_1305 NC_007406.1 1438560 1438799 D With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS 1438560..1438799 Nitrobacter winogradskyi Nb-255 3674805 YP_317919.1 CDS Nwi_1306 NC_007406.1 1438812 1439513 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1438812..1439513 Nitrobacter winogradskyi Nb-255 3674806 YP_317920.1 CDS Nwi_1307 NC_007406.1 1439510 1440187 D hypothetical protein 1439510..1440187 Nitrobacter winogradskyi Nb-255 3674807 YP_317921.1 CDS Nwi_1308 NC_007406.1 1440187 1442400 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1440187..1442400 Nitrobacter winogradskyi Nb-255 3674808 YP_317922.1 CDS Nwi_1309 NC_007406.1 1442613 1442846 D BolA-like protein 1442613..1442846 Nitrobacter winogradskyi Nb-255 3674809 YP_317923.1 CDS Nwi_1310 NC_007406.1 1442853 1443836 R hypothetical protein complement(1442853..1443836) Nitrobacter winogradskyi Nb-255 3674810 YP_317924.1 CDS Nwi_1311 NC_007406.1 1443876 1445123 R hypothetical protein complement(1443876..1445123) Nitrobacter winogradskyi Nb-255 3674811 YP_317925.1 CDS Nwi_1312 NC_007406.1 1445357 1445695 D glutaredoxin-like protein 1445357..1445695 Nitrobacter winogradskyi Nb-255 3674812 YP_317926.1 CDS Nwi_1313 NC_007406.1 1445922 1446185 D hypothetical protein 1445922..1446185 Nitrobacter winogradskyi Nb-255 3674813 YP_317927.1 CDS Nwi_1314 NC_007406.1 1446481 1446831 D transposase 1446481..1446831 Nitrobacter winogradskyi Nb-255 3676580 YP_317928.1 CDS Nwi_1315 NC_007406.1 1446783 1447424 D ISRm2011-2 transposase 1446783..1447424 Nitrobacter winogradskyi Nb-255 3676581 YP_317929.1 CDS rpsD NC_007406.1 1447600 1448217 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1447600..1448217) Nitrobacter winogradskyi Nb-255 3676582 YP_317930.1 CDS Nwi_1317 NC_007406.1 1448526 1449341 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1448526..1449341) Nitrobacter winogradskyi Nb-255 3676583 YP_317931.1 CDS Nwi_1318 NC_007406.1 1449609 1450166 R hypothetical protein complement(1449609..1450166) Nitrobacter winogradskyi Nb-255 3676584 YP_317932.1 CDS Nwi_1319 NC_007406.1 1450578 1451048 D hypothetical protein 1450578..1451048 Nitrobacter winogradskyi Nb-255 3676585 YP_317933.1 CDS Nwi_1320 NC_007406.1 1451258 1452052 D rhomboid-like protein 1451258..1452052 Nitrobacter winogradskyi Nb-255 3676586 YP_317934.1 CDS Nwi_1321 NC_007406.1 1452287 1452715 D hypothetical protein 1452287..1452715 Nitrobacter winogradskyi Nb-255 3676587 YP_317935.1 CDS Nwi_1322 NC_007406.1 1452808 1453182 D transposase 1452808..1453182 Nitrobacter winogradskyi Nb-255 3676588 YP_317936.1 CDS Nwi_1323 NC_007406.1 1453260 1453565 D ISCc1, transposase OrfB 1453260..1453565 Nitrobacter winogradskyi Nb-255 3676589 YP_317937.1 CDS Nwi_1324 NC_007406.1 1453579 1454625 R patatin complement(1453579..1454625) Nitrobacter winogradskyi Nb-255 3676590 YP_317938.1 CDS Nwi_1325 NC_007406.1 1454862 1455911 D hypothetical protein 1454862..1455911 Nitrobacter winogradskyi Nb-255 3676591 YP_317939.1 CDS Nwi_1326 NC_007406.1 1456139 1456492 R hypothetical protein complement(1456139..1456492) Nitrobacter winogradskyi Nb-255 3676592 YP_317940.1 CDS Nwi_1327 NC_007406.1 1456759 1457676 D hypothetical protein 1456759..1457676 Nitrobacter winogradskyi Nb-255 3676593 YP_317941.1 CDS Nwi_1328 NC_007406.1 1457787 1458242 R nitrogen-fixing NifU-like complement(1457787..1458242) Nitrobacter winogradskyi Nb-255 3676594 YP_317942.1 CDS folE NC_007406.1 1458492 1459217 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1458492..1459217 Nitrobacter winogradskyi Nb-255 3676595 YP_317943.1 CDS hisI NC_007406.1 1459462 1459899 D PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 1459462..1459899 Nitrobacter winogradskyi Nb-255 3676596 YP_317944.1 CDS Nwi_1331 NC_007406.1 1460271 1461215 D hypothetical protein 1460271..1461215 Nitrobacter winogradskyi Nb-255 3675774 YP_317945.1 CDS Nwi_1332 NC_007406.1 1461430 1463100 D hypothetical protein 1461430..1463100 Nitrobacter winogradskyi Nb-255 3677211 YP_317946.1 CDS Nwi_1333 NC_007406.1 1463188 1463766 R Hpt protein complement(1463188..1463766) Nitrobacter winogradskyi Nb-255 3674446 YP_317947.1 CDS Nwi_1334 NC_007406.1 1463778 1464323 R response regulator receiver complement(1463778..1464323) Nitrobacter winogradskyi Nb-255 3674447 YP_317948.1 CDS ppnK NC_007406.1 1464430 1465215 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1464430..1465215) Nitrobacter winogradskyi Nb-255 3674448 YP_317949.1 CDS Nwi_1336 NC_007406.1 1465483 1465923 D hypothetical protein 1465483..1465923 Nitrobacter winogradskyi Nb-255 3674449 YP_317950.1 CDS Nwi_1337 NC_007406.1 1466308 1467033 D outer membrane protein 1466308..1467033 Nitrobacter winogradskyi Nb-255 3674450 YP_317951.1 CDS Nwi_1338 NC_007406.1 1467245 1469692 R TonB-dependent siderophore receptor complement(1467245..1469692) Nitrobacter winogradskyi Nb-255 3674451 YP_317952.1 CDS Nwi_1339 NC_007406.1 1470031 1470990 R FecR protein complement(1470031..1470990) Nitrobacter winogradskyi Nb-255 3674452 YP_317953.1 CDS Nwi_1340 NC_007406.1 1471052 1471612 R fec I like protein complement(1471052..1471612) Nitrobacter winogradskyi Nb-255 3674453 YP_317954.1 CDS Nwi_1341 NC_007406.1 1472191 1472427 R hypothetical protein complement(1472191..1472427) Nitrobacter winogradskyi Nb-255 3674454 YP_317955.1 CDS Nwi_1342 NC_007406.1 1472948 1473190 D hypothetical protein 1472948..1473190 Nitrobacter winogradskyi Nb-255 3674455 YP_317956.1 CDS Nwi_1343 NC_007406.1 1474356 1474715 R PRC-barrel protein complement(1474356..1474715) Nitrobacter winogradskyi Nb-255 3674456 YP_317957.1 CDS secE NC_007406.1 1476083 1476274 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1476083..1476274 Nitrobacter winogradskyi Nb-255 3677021 YP_317958.1 CDS nusG NC_007406.1 1476304 1476834 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1476304..1476834 Nitrobacter winogradskyi Nb-255 3677022 YP_317959.1 CDS rplK NC_007406.1 1477022 1477450 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1477022..1477450 Nitrobacter winogradskyi Nb-255 3677023 YP_317960.1 CDS rplA NC_007406.1 1477457 1478149 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1477457..1478149 Nitrobacter winogradskyi Nb-255 3677024 YP_317961.2 CDS rplJ NC_007406.1 1478854 1479372 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1478854..1479372 Nitrobacter winogradskyi Nb-255 3677025 YP_317962.1 CDS rplL NC_007406.1 1479427 1479804 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1479427..1479804 Nitrobacter winogradskyi Nb-255 3677026 YP_317963.1 CDS rpoB NC_007406.1 1480397 1484539 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1480397..1484539 Nitrobacter winogradskyi Nb-255 3675767 YP_317964.1 CDS Nwi_1351 NC_007406.1 1484698 1488897 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1484698..1488897 Nitrobacter winogradskyi Nb-255 3675768 YP_317965.1 CDS Nwi_1352 NC_007406.1 1489325 1489798 R hypothetical protein complement(1489325..1489798) Nitrobacter winogradskyi Nb-255 3675769 YP_317966.1 CDS Nwi_1353 NC_007406.1 1489828 1490121 R hypothetical protein complement(1489828..1490121) Nitrobacter winogradskyi Nb-255 3675770 YP_317967.1 CDS Nwi_1354 NC_007406.1 1490173 1490499 R hypothetical protein complement(1490173..1490499) Nitrobacter winogradskyi Nb-255 3675771 YP_317968.1 CDS Nwi_1355 NC_007406.1 1490565 1491683 D hypothetical protein 1490565..1491683 Nitrobacter winogradskyi Nb-255 3675772 YP_317969.1 CDS Nwi_1356 NC_007406.1 1491845 1492555 D hypothetical protein 1491845..1492555 Nitrobacter winogradskyi Nb-255 3675773 YP_317970.1 CDS Nwi_1357 NC_007406.1 1492643 1492882 D hypothetical protein 1492643..1492882 Nitrobacter winogradskyi Nb-255 3674393 YP_317971.1 CDS Nwi_1358 NC_007406.1 1493645 1494010 D ISBm1, transposase orfA 1493645..1494010 Nitrobacter winogradskyi Nb-255 3674770 YP_317972.1 CDS rpsL NC_007406.1 1495400 1495771 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1495400..1495771 Nitrobacter winogradskyi Nb-255 3674771 YP_317973.1 CDS Nwi_1360 NC_007406.1 1495787 1496257 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1495787..1496257 Nitrobacter winogradskyi Nb-255 3674772 YP_317974.1 CDS Nwi_1361 NC_007406.1 1496290 1498362 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1496290..1498362 Nitrobacter winogradskyi Nb-255 3674773 YP_317975.1 CDS Nwi_1362 NC_007406.1 1498402 1499592 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1498402..1499592 Nitrobacter winogradskyi Nb-255 3674774 YP_317976.1 CDS rpsJ NC_007406.1 1499694 1500002 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1499694..1500002 Nitrobacter winogradskyi Nb-255 3674775 YP_317977.1 CDS rplC NC_007406.1 1500104 1500847 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1500104..1500847 Nitrobacter winogradskyi Nb-255 3674776 YP_317978.1 CDS rplD NC_007406.1 1500849 1501469 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1500849..1501469 Nitrobacter winogradskyi Nb-255 3674777 YP_317979.1 CDS rplW NC_007406.1 1501466 1501762 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1501466..1501762 Nitrobacter winogradskyi Nb-255 3674778 YP_317980.1 CDS rplB NC_007406.1 1501791 1502624 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1501791..1502624 Nitrobacter winogradskyi Nb-255 3674779 YP_317981.1 CDS rpsS NC_007406.1 1502640 1502918 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1502640..1502918 Nitrobacter winogradskyi Nb-255 3674780 YP_317982.1 CDS rplV NC_007406.1 1502929 1503315 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1502929..1503315 Nitrobacter winogradskyi Nb-255 3674781 YP_317983.1 CDS rpsC NC_007406.1 1503334 1504029 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1503334..1504029 Nitrobacter winogradskyi Nb-255 3677149 YP_317984.1 CDS rplP NC_007406.1 1504109 1504522 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1504109..1504522 Nitrobacter winogradskyi Nb-255 3677150 YP_317985.1 CDS Nwi_1372 NC_007406.1 1504528 1504734 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1504528..1504734 Nitrobacter winogradskyi Nb-255 3677151 YP_317986.1 CDS rpsQ NC_007406.1 1504746 1504994 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1504746..1504994 Nitrobacter winogradskyi Nb-255 3677152 YP_317987.1 CDS rplN NC_007406.1 1505034 1505402 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1505034..1505402 Nitrobacter winogradskyi Nb-255 3677153 YP_317988.1 CDS rplX NC_007406.1 1505402 1505716 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1505402..1505716 Nitrobacter winogradskyi Nb-255 3677154 YP_317989.1 CDS rplE NC_007406.1 1505709 1506266 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1505709..1506266 Nitrobacter winogradskyi Nb-255 3677155 YP_317990.1 CDS rpsN NC_007406.1 1506310 1506615 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1506310..1506615 Nitrobacter winogradskyi Nb-255 3677156 YP_317991.1 CDS rpsH NC_007406.1 1506629 1507027 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1506629..1507027 Nitrobacter winogradskyi Nb-255 3677157 YP_317992.1 CDS rplF NC_007406.1 1507099 1507632 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1507099..1507632 Nitrobacter winogradskyi Nb-255 3677158 YP_317993.1 CDS rplR NC_007406.1 1507644 1508006 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1507644..1508006 Nitrobacter winogradskyi Nb-255 3677159 YP_317994.1 CDS rpsE NC_007406.1 1508065 1508640 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1508065..1508640 Nitrobacter winogradskyi Nb-255 3677160 YP_317995.1 CDS rpmD NC_007406.1 1508719 1508913 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1508719..1508913 Nitrobacter winogradskyi Nb-255 3677161 YP_317996.1 CDS rplO NC_007406.1 1509033 1509518 D late assembly protein; 50S ribosomal protein L15 1509033..1509518 Nitrobacter winogradskyi Nb-255 3677162 YP_317997.1 CDS secY NC_007406.1 1509667 1510998 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1509667..1510998 Nitrobacter winogradskyi Nb-255 3677163 YP_317998.1 CDS adk NC_007406.1 1511455 1512075 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1511455..1512075 Nitrobacter winogradskyi Nb-255 3677164 YP_317999.1 CDS rpsM NC_007406.1 1512326 1512694 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1512326..1512694 Nitrobacter winogradskyi Nb-255 3677165 YP_318000.1 CDS Nwi_1387 NC_007406.1 1512804 1513196 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1512804..1513196 Nitrobacter winogradskyi Nb-255 3677166 YP_318001.1 CDS Nwi_1388 NC_007406.1 1513305 1514324 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1513305..1514324 Nitrobacter winogradskyi Nb-255 3677167 YP_318002.1 CDS rplQ NC_007406.1 1514441 1514857 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1514441..1514857 Nitrobacter winogradskyi Nb-255 3677027 YP_318003.1 CDS Nwi_1390 NC_007406.1 1515255 1515524 D hypothetical protein 1515255..1515524 Nitrobacter winogradskyi Nb-255 3677028 YP_318004.1 CDS Nwi_1391 NC_007406.1 1515861 1517351 D peptidase S1C, Do 1515861..1517351 Nitrobacter winogradskyi Nb-255 3677029 YP_318005.1 CDS Nwi_1392 NC_007406.1 1517348 1518679 D recombination factor protein RarA 1517348..1518679 Nitrobacter winogradskyi Nb-255 3677030 YP_318006.1 CDS Nwi_1393 NC_007406.1 1518676 1519515 D hypothetical protein 1518676..1519515 Nitrobacter winogradskyi Nb-255 3677031 YP_318007.1 CDS Nwi_1394 NC_007406.1 1519738 1520976 D pseudouridine synthase 1519738..1520976 Nitrobacter winogradskyi Nb-255 3677032 YP_318008.1 CDS Nwi_1395 NC_007406.1 1521189 1521539 D transposase 1521189..1521539 Nitrobacter winogradskyi Nb-255 3677033 YP_318009.1 CDS Nwi_1396 NC_007406.1 1521491 1522132 D ISRm2011-2 transposase 1521491..1522132 Nitrobacter winogradskyi Nb-255 3677034 YP_318010.1 CDS Nwi_1397 NC_007406.1 1522320 1522685 D ISBm1, transposase orfA 1522320..1522685 Nitrobacter winogradskyi Nb-255 3677035 YP_318011.1 CDS Nwi_1398 NC_007406.1 1523263 1524045 D chaperone required for the assembly of F1-ATPase 1523263..1524045 Nitrobacter winogradskyi Nb-255 3677036 YP_318012.1 CDS Nwi_1399 NC_007406.1 1524094 1525746 D hypothetical protein 1524094..1525746 Nitrobacter winogradskyi Nb-255 3677037 YP_318013.1 CDS Nwi_1400 NC_007406.1 1525743 1526012 D type III secretion proteins, related to flagellar biosynthesis protein FlhB 1525743..1526012 Nitrobacter winogradskyi Nb-255 3677038 YP_318014.1 CDS Nwi_1401 NC_007406.1 1526114 1527646 D carboxyl transferase 1526114..1527646 Nitrobacter winogradskyi Nb-255 3677039 YP_318015.1 CDS Nwi_1402 NC_007406.1 1527658 1528581 D hypothetical protein 1527658..1528581 Nitrobacter winogradskyi Nb-255 3677040 YP_318016.1 CDS Nwi_1403 NC_007406.1 1528670 1529170 R SmpA/OmlA protein complement(1528670..1529170) Nitrobacter winogradskyi Nb-255 3677041 YP_318017.1 CDS Nwi_1404 NC_007406.1 1529197 1529820 D ubiquinol-cytochrome C chaperone 1529197..1529820 Nitrobacter winogradskyi Nb-255 3677042 YP_318018.1 CDS Nwi_1405 NC_007406.1 1529817 1530407 D hypothetical protein 1529817..1530407 Nitrobacter winogradskyi Nb-255 3677043 YP_318019.1 CDS Nwi_1406 NC_007406.1 1530650 1531711 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 1530650..1531711 Nitrobacter winogradskyi Nb-255 3677044 YP_318020.1 CDS Nwi_1407 NC_007406.1 1531708 1532685 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1531708..1532685 Nitrobacter winogradskyi Nb-255 3677045 YP_318021.1 CDS ihfA NC_007406.1 1532813 1533133 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1532813..1533133 Nitrobacter winogradskyi Nb-255 3677046 YP_318022.1 CDS Nwi_1409 NC_007406.1 1533152 1533772 D merR family transcriptional regulator 1533152..1533772 Nitrobacter winogradskyi Nb-255 3675236 YP_318023.1 CDS Nwi_1410 NC_007406.1 1534194 1535375 D saccharopine dehydrogenase 1534194..1535375 Nitrobacter winogradskyi Nb-255 3675238 YP_318024.1 CDS Nwi_1411 NC_007406.1 1535426 1536688 R hypothetical protein complement(1535426..1536688) Nitrobacter winogradskyi Nb-255 3675239 YP_318025.1 CDS Nwi_1412 NC_007406.1 1536722 1538254 R sugar transferase complement(1536722..1538254) Nitrobacter winogradskyi Nb-255 3675240 YP_318026.1 CDS Nwi_1413 NC_007406.1 1538362 1539495 R group 1 glycosyl transferase complement(1538362..1539495) Nitrobacter winogradskyi Nb-255 3675241 YP_318027.1 CDS Nwi_1414 NC_007406.1 1539499 1540203 R polysaccharide export protein complement(1539499..1540203) Nitrobacter winogradskyi Nb-255 3675242 YP_318028.1 CDS Nwi_1415 NC_007406.1 1540451 1542598 D lipopolysaccharide biosynthesis protein 1540451..1542598 Nitrobacter winogradskyi Nb-255 3675243 YP_318029.1 CDS Nwi_1416 NC_007406.1 1542621 1543808 R hypothetical protein complement(1542621..1543808) Nitrobacter winogradskyi Nb-255 3675244 YP_318030.1 CDS Nwi_1417 NC_007406.1 1543936 1544142 R hypothetical protein complement(1543936..1544142) Nitrobacter winogradskyi Nb-255 3675245 YP_318031.1 CDS Nwi_1418 NC_007406.1 1544240 1545322 D cytochrome oxidase assembly 1544240..1545322 Nitrobacter winogradskyi Nb-255 3675246 YP_318032.1 CDS Nwi_1419 NC_007406.1 1545582 1546838 D major facilitator superfamily transporter 1545582..1546838 Nitrobacter winogradskyi Nb-255 3675247 YP_318033.1 CDS Nwi_1420 NC_007406.1 1547180 1548457 R catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase complement(1547180..1548457) Nitrobacter winogradskyi Nb-255 3675248 YP_318034.2 CDS rplM NC_007406.1 1548835 1549299 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1548835..1549299 Nitrobacter winogradskyi Nb-255 3675249 YP_318035.1 CDS rpsI NC_007406.1 1549302 1549778 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1549302..1549778 Nitrobacter winogradskyi Nb-255 3675250 YP_318036.1 CDS Nwi_1423 NC_007406.1 1549906 1551048 D lytic transglycosylase, catalytic 1549906..1551048 Nitrobacter winogradskyi Nb-255 3675251 YP_318037.1 CDS Nwi_1424 NC_007406.1 1551093 1551614 D hypothetical protein 1551093..1551614 Nitrobacter winogradskyi Nb-255 3675252 YP_318038.1 CDS Nwi_1425 NC_007406.1 1551629 1552873 R hypothetical protein complement(1551629..1552873) Nitrobacter winogradskyi Nb-255 3675253 YP_318039.1 CDS Nwi_1426 NC_007406.1 1553005 1553757 R glycerophosphoryl diester phosphodiesterase complement(1553005..1553757) Nitrobacter winogradskyi Nb-255 3677168 YP_318040.1 CDS Nwi_1427 NC_007406.1 1553764 1554231 R endoribonuclease L-PSP complement(1553764..1554231) Nitrobacter winogradskyi Nb-255 3677169 YP_318041.1 CDS Nwi_1428 NC_007406.1 1554566 1555453 D hypothetical protein 1554566..1555453 Nitrobacter winogradskyi Nb-255 3677170 YP_318042.1 CDS Nwi_1429 NC_007406.1 1555504 1556793 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(1555504..1556793) Nitrobacter winogradskyi Nb-255 3677171 YP_318043.1 CDS Nwi_1430 NC_007406.1 1556790 1557098 R hypothetical protein complement(1556790..1557098) Nitrobacter winogradskyi Nb-255 3677172 YP_318044.1 CDS Nwi_1431 NC_007406.1 1557317 1557682 D response regulator receiver 1557317..1557682 Nitrobacter winogradskyi Nb-255 3677173 YP_318045.1 CDS pleD NC_007406.1 1557693 1559066 D involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD 1557693..1559066 Nitrobacter winogradskyi Nb-255 3677174 YP_318046.1 CDS rpmG NC_007406.1 1559427 1559594 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1559427..1559594) Nitrobacter winogradskyi Nb-255 3677175 YP_318047.1 CDS Nwi_1434 NC_007406.1 1560268 1561740 D type I secretion outer membrane protein, TolC 1560268..1561740 Nitrobacter winogradskyi Nb-255 3677176 YP_318048.1 CDS Nwi_1435 NC_007406.1 1561947 1562666 D hypothetical protein 1561947..1562666 Nitrobacter winogradskyi Nb-255 3677177 YP_318049.1 CDS valS NC_007406.1 1562869 1565727 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1562869..1565727 Nitrobacter winogradskyi Nb-255 3677178 YP_318050.1 CDS Nwi_1437 NC_007406.1 1565724 1566890 D major facilitator superfamily transporter 1565724..1566890 Nitrobacter winogradskyi Nb-255 3677179 YP_318051.1 CDS Nwi_1438 NC_007406.1 1566871 1567497 R responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase complement(1566871..1567497) Nitrobacter winogradskyi Nb-255 3677180 YP_318052.1 CDS Nwi_1439 NC_007406.1 1567715 1568674 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1567715..1568674 Nitrobacter winogradskyi Nb-255 3677181 YP_318053.1 CDS Nwi_1440 NC_007406.1 1568686 1569153 D cyclase 1568686..1569153 Nitrobacter winogradskyi Nb-255 3677182 YP_318054.1 CDS Nwi_1441 NC_007406.1 1569164 1569790 R CinA protein complement(1569164..1569790) Nitrobacter winogradskyi Nb-255 3677183 YP_318055.1 CDS Nwi_1442 NC_007406.1 1569792 1570988 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(1569792..1570988) Nitrobacter winogradskyi Nb-255 3677184 YP_318056.1 CDS Nwi_1443 NC_007406.1 1571189 1572238 D dihydrouridine synthase TIM-barrel protein nifR3 1571189..1572238 Nitrobacter winogradskyi Nb-255 3677185 YP_318057.1 CDS Nwi_1444 NC_007406.1 1572235 1573410 D nitrogen regulation protein ntrB 1572235..1573410 Nitrobacter winogradskyi Nb-255 3677186 YP_318058.1 CDS Nwi_1445 NC_007406.1 1573418 1574857 D Fis family transcriptional regulator 1573418..1574857 Nitrobacter winogradskyi Nb-255 3675184 YP_318059.1 CDS Nwi_1446 NC_007406.1 1575035 1577335 D nitrogen regulatory signal transduction histidine kinase NtrY 1575035..1577335 Nitrobacter winogradskyi Nb-255 3675185 YP_318060.1 CDS Nwi_1447 NC_007406.1 1577353 1578723 D nitrogen assimilation regulatory protein ntrX 1577353..1578723 Nitrobacter winogradskyi Nb-255 3675186 YP_318061.1 CDS Nwi_1448 NC_007406.1 1578806 1579663 D catalyzes the transamination of D-amino acids and their alpha-keto acids; D-amino acid aminotransferase 1578806..1579663 Nitrobacter winogradskyi Nb-255 3675187 YP_318062.1 CDS hfq NC_007406.1 1579848 1580096 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 1579848..1580096 Nitrobacter winogradskyi Nb-255 3675188 YP_318063.1 CDS Nwi_1450 NC_007406.1 1580165 1581493 D HSR1-like GTP-binding protein 1580165..1581493 Nitrobacter winogradskyi Nb-255 3675189 YP_318064.1 CDS Nwi_1451 NC_007406.1 1581595 1583031 D aldehyde dehydrogenase 1581595..1583031 Nitrobacter winogradskyi Nb-255 3675190 YP_318065.1 CDS mazG NC_007406.1 1583054 1583878 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase complement(1583054..1583878) Nitrobacter winogradskyi Nb-255 3675191 YP_318066.1 CDS Nwi_1453 NC_007406.1 1584013 1584729 D exoenzyme S synthesis protein B 1584013..1584729 Nitrobacter winogradskyi Nb-255 3675192 YP_318067.1 CDS Nwi_1454 NC_007406.1 1584886 1585368 D hypothetical protein 1584886..1585368 Nitrobacter winogradskyi Nb-255 3675193 YP_318068.1 CDS Nwi_1455 NC_007406.1 1585422 1586693 D Outer membrane efflux protein 1585422..1586693 Nitrobacter winogradskyi Nb-255 3675194 YP_318069.1 CDS Nwi_1456 NC_007406.1 1586690 1587682 D secretion protein HlyD 1586690..1587682 Nitrobacter winogradskyi Nb-255 3675195 YP_318070.1 CDS Nwi_1457 NC_007406.1 1587672 1590872 D heavy metal efflux pump CzcA 1587672..1590872 Nitrobacter winogradskyi Nb-255 3675196 YP_318071.1 CDS Nwi_1458 NC_007406.1 1590960 1591304 R alkylhydroperoxidase complement(1590960..1591304) Nitrobacter winogradskyi Nb-255 3675197 YP_318072.1 CDS Nwi_1459 NC_007406.1 1591599 1591925 R hypothetical protein complement(1591599..1591925) Nitrobacter winogradskyi Nb-255 3675198 YP_318073.1 CDS Nwi_1460 NC_007406.1 1591968 1592771 R hypothetical protein complement(1591968..1592771) Nitrobacter winogradskyi Nb-255 3675199 YP_318074.1 CDS Nwi_1461 NC_007406.1 1592768 1593559 R TatD-related deoxyribonuclease complement(1592768..1593559) Nitrobacter winogradskyi Nb-255 3675200 YP_318075.2 CDS metG NC_007406.1 1593574 1595208 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1593574..1595208) Nitrobacter winogradskyi Nb-255 3675201 YP_318076.1 CDS Nwi_1463 NC_007406.1 1595717 1596757 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1595717..1596757) Nitrobacter winogradskyi Nb-255 3675202 YP_318077.1 CDS Nwi_1464 NC_007406.1 1596754 1597446 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(1596754..1597446) Nitrobacter winogradskyi Nb-255 3675203 YP_318078.1 CDS Nwi_1465 NC_007406.1 1597446 1598687 R peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 complement(1597446..1598687) Nitrobacter winogradskyi Nb-255 3675554 YP_318079.1 CDS Nwi_1466 NC_007406.1 1598811 1599650 R rare lipoprotein A complement(1598811..1599650) Nitrobacter winogradskyi Nb-255 3675555 YP_318080.1 CDS Nwi_1467 NC_007406.1 1599810 1600106 R hypothetical protein complement(1599810..1600106) Nitrobacter winogradskyi Nb-255 3675556 YP_318081.1 CDS Nwi_1468 NC_007406.1 1601144 1601731 R hypothetical protein complement(1601144..1601731) Nitrobacter winogradskyi Nb-255 3675557 YP_318082.1 CDS Nwi_1469 NC_007406.1 1601761 1602174 D hypothetical protein 1601761..1602174 Nitrobacter winogradskyi Nb-255 3675558 YP_318083.1 CDS Nwi_1470 NC_007406.1 1602388 1602762 R hypothetical protein complement(1602388..1602762) Nitrobacter winogradskyi Nb-255 3675559 YP_318084.1 CDS Nwi_1471 NC_007406.1 1602759 1604765 R hypothetical protein complement(1602759..1604765) Nitrobacter winogradskyi Nb-255 3675560 YP_318085.1 CDS Nwi_1472 NC_007406.1 1604767 1606380 R phage terminase complement(1604767..1606380) Nitrobacter winogradskyi Nb-255 3675561 YP_318086.1 CDS Nwi_1473 NC_007406.1 1606380 1606775 R phage terminase, small subunit , P27 complement(1606380..1606775) Nitrobacter winogradskyi Nb-255 3675562 YP_318087.1 CDS Nwi_1474 NC_007406.1 1606775 1607824 R per-hexamer repeat-containing protein complement(1606775..1607824) Nitrobacter winogradskyi Nb-255 3675563 YP_318088.1 CDS Nwi_1475 NC_007406.1 1607946 1608260 R phage head-tail adaptor complement(1607946..1608260) Nitrobacter winogradskyi Nb-255 3675564 YP_318089.1 CDS Nwi_1476 NC_007406.1 1608257 1608691 R hypothetical protein complement(1608257..1608691) Nitrobacter winogradskyi Nb-255 3675565 YP_318090.1 CDS Nwi_1477 NC_007406.1 1608688 1609113 R phage protein, HK97, gp10 complement(1608688..1609113) Nitrobacter winogradskyi Nb-255 3675566 YP_318091.1 CDS Nwi_1478 NC_007406.1 1609103 1609423 R phage protein DNA packaging protein complement(1609103..1609423) Nitrobacter winogradskyi Nb-255 3675567 YP_318092.1 CDS Nwi_1479 NC_007406.1 1609423 1609725 R hypothetical protein complement(1609423..1609725) Nitrobacter winogradskyi Nb-255 3675568 YP_318093.1 CDS Nwi_1480 NC_007406.1 1609728 1610090 R HNH endonuclease complement(1609728..1610090) Nitrobacter winogradskyi Nb-255 3675569 YP_318094.1 CDS Nwi_1481 NC_007406.1 1610161 1610553 R hypothetical protein complement(1610161..1610553) Nitrobacter winogradskyi Nb-255 3675570 YP_318095.1 CDS Nwi_1482 NC_007406.1 1610566 1611723 R Phage major capsid protein, HK97 complement(1610566..1611723) Nitrobacter winogradskyi Nb-255 3675571 YP_318096.1 CDS Nwi_1483 NC_007406.1 1611729 1612226 R peptidase U35 complement(1611729..1612226) Nitrobacter winogradskyi Nb-255 3675572 YP_318097.1 CDS Nwi_1484 NC_007406.1 1612408 1612797 R hypothetical protein complement(1612408..1612797) Nitrobacter winogradskyi Nb-255 3674204 YP_318098.1 CDS Nwi_1485 NC_007406.1 1612790 1613989 R Phage portal protein, HK97 complement(1612790..1613989) Nitrobacter winogradskyi Nb-255 3674205 YP_318099.1 CDS Nwi_1486 NC_007406.1 1614677 1617067 R ATPase complement(1614677..1617067) Nitrobacter winogradskyi Nb-255 3674206 YP_318100.1 CDS Nwi_1487 NC_007406.1 1618354 1619484 D phage integrase 1618354..1619484 Nitrobacter winogradskyi Nb-255 3674207 YP_318101.1 CDS Nwi_1488 NC_007406.1 1619748 1619987 R hypothetical protein complement(1619748..1619987) Nitrobacter winogradskyi Nb-255 3674209 YP_318102.1 CDS Nwi_1489 NC_007406.1 1619994 1620473 R hypothetical protein complement(1619994..1620473) Nitrobacter winogradskyi Nb-255 3674210 YP_318103.1 CDS Nwi_1490 NC_007406.1 1620950 1621321 D lipoprotein 1620950..1621321 Nitrobacter winogradskyi Nb-255 3674211 YP_318104.1 CDS Nwi_1491 NC_007406.1 1621871 1622245 D transposase IS3/IS911 1621871..1622245 Nitrobacter winogradskyi Nb-255 3674212 YP_318105.1 CDS Nwi_1492 NC_007406.1 1622242 1623222 D Fis family transcriptional regulator 1622242..1623222 Nitrobacter winogradskyi Nb-255 3674213 YP_318106.1 CDS Nwi_1493 NC_007406.1 1623167 1624480 R hypothetical protein complement(1623167..1624480) Nitrobacter winogradskyi Nb-255 3674214 YP_318107.1 CDS Nwi_1494 NC_007406.1 1624477 1624740 R hypothetical protein complement(1624477..1624740) Nitrobacter winogradskyi Nb-255 3674215 YP_318108.1 CDS Nwi_1495 NC_007406.1 1625528 1626124 R hypothetical protein complement(1625528..1626124) Nitrobacter winogradskyi Nb-255 3674216 YP_318109.1 CDS Nwi_1496 NC_007406.1 1626121 1627152 R phage integrase complement(1626121..1627152) Nitrobacter winogradskyi Nb-255 3674217 YP_318110.1 CDS Nwi_1497 NC_007406.1 1627507 1627755 D hypothetical protein 1627507..1627755 Nitrobacter winogradskyi Nb-255 3674218 YP_318111.1 CDS Nwi_1498 NC_007406.1 1628029 1628457 D hypothetical protein 1628029..1628457 Nitrobacter winogradskyi Nb-255 3674219 YP_318112.1 CDS Nwi_1499 NC_007406.1 1628607 1629425 D hypothetical protein 1628607..1629425 Nitrobacter winogradskyi Nb-255 3674220 YP_318113.1 CDS Nwi_1500 NC_007406.1 1629447 1629857 R cupin complement(1629447..1629857) Nitrobacter winogradskyi Nb-255 3674221 YP_318114.1 CDS Nwi_1501 NC_007406.1 1629986 1630720 D hypothetical protein 1629986..1630720 Nitrobacter winogradskyi Nb-255 3675904 YP_318115.1 CDS Nwi_1502 NC_007406.1 1630717 1631736 D allophanate hydrolase subunit 2 1630717..1631736 Nitrobacter winogradskyi Nb-255 3675905 YP_318116.1 CDS Nwi_1503 NC_007406.1 1631798 1632565 D LamB/YcsF family protein 1631798..1632565 Nitrobacter winogradskyi Nb-255 3675906 YP_318117.1 CDS Nwi_1504 NC_007406.1 1632901 1633875 R zinc-containing alcohol dehydrogenase superfamily protein complement(1632901..1633875) Nitrobacter winogradskyi Nb-255 3675907 YP_318118.1 CDS Nwi_1505 NC_007406.1 1633961 1634686 R integral membrane protein TerC complement(1633961..1634686) Nitrobacter winogradskyi Nb-255 3675908 YP_318119.1 CDS Nwi_1506 NC_007406.1 1634683 1635417 R CDP-alcohol phosphatidyltransferase complement(1634683..1635417) Nitrobacter winogradskyi Nb-255 3675909 YP_318120.1 CDS Nwi_1507 NC_007406.1 1635569 1636843 D 2-octaprenyl-6-methoxyphenyl hydroxylase 1635569..1636843 Nitrobacter winogradskyi Nb-255 3675910 YP_318121.1 CDS Nwi_1508 NC_007406.1 1636970 1637314 D hemimethylated DNA-binding region 1636970..1637314 Nitrobacter winogradskyi Nb-255 3675911 YP_318122.1 CDS Nwi_1509 NC_007406.1 1637384 1638118 R invasion associated locus B complement(1637384..1638118) Nitrobacter winogradskyi Nb-255 3675912 YP_318123.1 CDS Nwi_1510 NC_007406.1 1638492 1640354 D extracellular solute-binding protein 1638492..1640354 Nitrobacter winogradskyi Nb-255 3675913 YP_318124.1 CDS Nwi_1511 NC_007406.1 1640359 1641861 D AMP-dependent synthetase/ligase 1640359..1641861 Nitrobacter winogradskyi Nb-255 3675914 YP_318125.1 CDS Nwi_1512 NC_007406.1 1641947 1643176 D hypothetical protein 1641947..1643176 Nitrobacter winogradskyi Nb-255 3675915 YP_318126.1 CDS Nwi_1513 NC_007406.1 1643185 1646709 R transcription-repair coupling factor complement(1643185..1646709) Nitrobacter winogradskyi Nb-255 3675916 YP_318127.1 CDS Nwi_1514 NC_007406.1 1646706 1647074 R hypothetical protein complement(1646706..1647074) Nitrobacter winogradskyi Nb-255 3675917 YP_318128.1 CDS Nwi_1515 NC_007406.1 1647153 1649252 D DEAD/DEAH box helicase 1647153..1649252 Nitrobacter winogradskyi Nb-255 3675918 YP_318129.1 CDS Nwi_1516 NC_007406.1 1649391 1650164 R hypothetical protein complement(1649391..1650164) Nitrobacter winogradskyi Nb-255 3675919 YP_318130.1 CDS Nwi_1517 NC_007406.1 1650282 1652108 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1650282..1652108) Nitrobacter winogradskyi Nb-255 3675920 YP_318131.1 CDS Nwi_1518 NC_007406.1 1652312 1652677 D hypothetical protein 1652312..1652677 Nitrobacter winogradskyi Nb-255 3675921 YP_318132.1 CDS Nwi_1519 NC_007406.1 1653014 1653853 R hypothetical protein complement(1653014..1653853) Nitrobacter winogradskyi Nb-255 3676544 YP_318133.1 CDS Nwi_1520 NC_007406.1 1654004 1654717 R hypothetical protein complement(1654004..1654717) Nitrobacter winogradskyi Nb-255 3676545 YP_318134.1 CDS Nwi_1521 NC_007406.1 1654765 1657863 R acriflavin resistance protein complement(1654765..1657863) Nitrobacter winogradskyi Nb-255 3676546 YP_318135.1 CDS Nwi_1522 NC_007406.1 1657863 1660985 R acriflavin resistance protein complement(1657863..1660985) Nitrobacter winogradskyi Nb-255 3676547 YP_318136.1 CDS Nwi_1523 NC_007406.1 1661048 1662421 R secretion protein HlyD complement(1661048..1662421) Nitrobacter winogradskyi Nb-255 3676548 YP_318137.1 CDS Nwi_1524 NC_007406.1 1662411 1663895 R RND efflux system, outer membrane lipoprotein, NodT complement(1662411..1663895) Nitrobacter winogradskyi Nb-255 3676549 YP_318138.1 CDS Nwi_1525 NC_007406.1 1664324 1665382 D CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A 1664324..1665382 Nitrobacter winogradskyi Nb-255 3676550 YP_318139.1 CDS Nwi_1526 NC_007406.1 1665396 1666139 R ABC transporter ATPase complement(1665396..1666139) Nitrobacter winogradskyi Nb-255 3676551 YP_318140.1 CDS Nwi_1527 NC_007406.1 1666152 1667672 R amino acid ABC transporter inner membrane component complement(1666152..1667672) Nitrobacter winogradskyi Nb-255 3676552 YP_318141.1 CDS Nwi_1528 NC_007406.1 1667669 1668874 R amino acid ABC transporter inner membrane component complement(1667669..1668874) Nitrobacter winogradskyi Nb-255 3676553 YP_318142.1 CDS Nwi_1529 NC_007406.1 1668890 1669930 R extracellular solute-binding protein complement(1668890..1669930) Nitrobacter winogradskyi Nb-255 3676554 YP_318143.1 CDS Nwi_1530 NC_007406.1 1670394 1671590 D cystathionine beta-lyase 1670394..1671590 Nitrobacter winogradskyi Nb-255 3676555 YP_318144.1 CDS Nwi_1531 NC_007406.1 1671675 1671998 R lipid A biosynthesis complement(1671675..1671998) Nitrobacter winogradskyi Nb-255 3676556 YP_318145.1 CDS Nwi_1532 NC_007406.1 1671991 1672740 R glycosyl transferase family protein complement(1671991..1672740) Nitrobacter winogradskyi Nb-255 3676557 YP_318146.1 CDS Nwi_1533 NC_007406.1 1672754 1674508 R glycosyl transferase family protein complement(1672754..1674508) Nitrobacter winogradskyi Nb-255 3676558 YP_318147.1 CDS Nwi_1534 NC_007406.1 1674548 1676668 R penicillin-binding protein 1C complement(1674548..1676668) Nitrobacter winogradskyi Nb-255 3676559 YP_318148.1 CDS Nwi_1535 NC_007406.1 1676665 1681884 R extracellular alpha-helical protein complement(1676665..1681884) Nitrobacter winogradskyi Nb-255 3676560 YP_318149.1 CDS Nwi_1536 NC_007406.1 1683246 1683563 D hypothetical protein 1683246..1683563 Nitrobacter winogradskyi Nb-255 3676364 YP_318150.1 CDS Nwi_1537 NC_007406.1 1683509 1684045 R hypothetical protein complement(1683509..1684045) Nitrobacter winogradskyi Nb-255 3676365 YP_318151.1 CDS Nwi_1538 NC_007406.1 1684049 1684282 R hypothetical protein complement(1684049..1684282) Nitrobacter winogradskyi Nb-255 3676366 YP_318152.1 CDS Nwi_1539 NC_007406.1 1684576 1684998 R hypothetical protein complement(1684576..1684998) Nitrobacter winogradskyi Nb-255 3676367 YP_318153.1 CDS Nwi_1540 NC_007406.1 1684998 1685771 R hypothetical protein complement(1684998..1685771) Nitrobacter winogradskyi Nb-255 3676368 YP_318154.1 CDS Nwi_1541 NC_007406.1 1686140 1687627 D Fis family transcriptional regulator 1686140..1687627 Nitrobacter winogradskyi Nb-255 3676369 YP_318155.1 CDS Nwi_1542 NC_007406.1 1687660 1688919 R Phage major capsid protein, HK97 complement(1687660..1688919) Nitrobacter winogradskyi Nb-255 3676370 YP_318156.1 CDS Nwi_1543 NC_007406.1 1688930 1689775 R peptidase S14, ClpP complement(1688930..1689775) Nitrobacter winogradskyi Nb-255 3676371 YP_318157.1 CDS Nwi_1544 NC_007406.1 1689753 1691027 R Phage portal protein, HK97 complement(1689753..1691027) Nitrobacter winogradskyi Nb-255 3676372 YP_318158.1 CDS Nwi_1545 NC_007406.1 1691040 1692806 R phage terminase complement(1691040..1692806) Nitrobacter winogradskyi Nb-255 3676373 YP_318159.1 CDS Nwi_1546 NC_007406.1 1692841 1694253 R DNA methylase N-4/N-6 complement(1692841..1694253) Nitrobacter winogradskyi Nb-255 3676374 YP_318160.1 CDS Nwi_1547 NC_007406.1 1694228 1694698 R hypothetical protein complement(1694228..1694698) Nitrobacter winogradskyi Nb-255 3676375 YP_318161.1 CDS Nwi_1548 NC_007406.1 1694944 1695330 R hypothetical protein complement(1694944..1695330) Nitrobacter winogradskyi Nb-255 3676376 YP_318162.1 CDS Nwi_1549 NC_007406.1 1695554 1696258 R transcription antitermination protein nusG complement(1695554..1696258) Nitrobacter winogradskyi Nb-255 3676377 YP_318163.1 CDS Nwi_1550 NC_007406.1 1696255 1697451 R hypothetical protein complement(1696255..1697451) Nitrobacter winogradskyi Nb-255 3676378 YP_318164.1 CDS Nwi_1551 NC_007406.1 1697448 1697840 R hypothetical protein complement(1697448..1697840) Nitrobacter winogradskyi Nb-255 3676379 YP_318165.1 CDS Nwi_1552 NC_007406.1 1697837 1698571 R hypothetical protein complement(1697837..1698571) Nitrobacter winogradskyi Nb-255 3676380 YP_318166.1 CDS Nwi_1553 NC_007406.1 1698774 1699316 R hypothetical protein complement(1698774..1699316) Nitrobacter winogradskyi Nb-255 3674457 YP_318167.1 CDS Nwi_1554 NC_007406.1 1699313 1701565 R hypothetical protein complement(1699313..1701565) Nitrobacter winogradskyi Nb-255 3674793 YP_318168.1 CDS Nwi_1555 NC_007406.1 1701562 1702095 R hypothetical protein complement(1701562..1702095) Nitrobacter winogradskyi Nb-255 3676758 YP_318169.1 CDS Nwi_1556 NC_007406.1 1702092 1702367 R hypothetical protein complement(1702092..1702367) Nitrobacter winogradskyi Nb-255 3676759 YP_318170.1 CDS Nwi_1557 NC_007406.1 1702512 1703132 R hypothetical protein complement(1702512..1703132) Nitrobacter winogradskyi Nb-255 3676760 YP_318171.1 CDS Nwi_1558 NC_007406.1 1703255 1703527 D hypothetical protein 1703255..1703527 Nitrobacter winogradskyi Nb-255 3676761 YP_318172.1 CDS Nwi_1559 NC_007406.1 1703752 1704144 R hypothetical protein complement(1703752..1704144) Nitrobacter winogradskyi Nb-255 3676762 YP_318173.1 CDS Nwi_1560 NC_007406.1 1704243 1704515 D hypothetical protein 1704243..1704515 Nitrobacter winogradskyi Nb-255 3676763 YP_318174.1 CDS Nwi_1561 NC_007406.1 1705281 1705526 D hypothetical protein 1705281..1705526 Nitrobacter winogradskyi Nb-255 3676764 YP_318175.1 CDS Nwi_1562 NC_007406.1 1705612 1705842 D hypothetical protein 1705612..1705842 Nitrobacter winogradskyi Nb-255 3676765 YP_318176.1 CDS Nwi_1563 NC_007406.1 1705839 1706108 D hypothetical protein 1705839..1706108 Nitrobacter winogradskyi Nb-255 3676766 YP_318177.1 CDS Nwi_1564 NC_007406.1 1706301 1707560 D phage Gp37Gp68 1706301..1707560 Nitrobacter winogradskyi Nb-255 3676767 YP_318178.1 CDS Nwi_1565 NC_007406.1 1708146 1709396 D phage integrase 1708146..1709396 Nitrobacter winogradskyi Nb-255 3676768 YP_318179.1 CDS Nwi_1566 NC_007406.1 1709491 1709982 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1709491..1709982) Nitrobacter winogradskyi Nb-255 3676770 YP_318180.1 CDS Nwi_1567 NC_007406.1 1710440 1711216 D outer-membrane protein precursor 1710440..1711216 Nitrobacter winogradskyi Nb-255 3676771 YP_318181.1 CDS uvrA NC_007406.1 1711725 1714706 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1711725..1714706 Nitrobacter winogradskyi Nb-255 3676772 YP_318182.1 CDS Nwi_1569 NC_007406.1 1714929 1715564 D hypothetical protein 1714929..1715564 Nitrobacter winogradskyi Nb-255 3676773 YP_318183.1 CDS Nwi_1570 NC_007406.1 1715982 1716251 D hypothetical protein 1715982..1716251 Nitrobacter winogradskyi Nb-255 3676774 YP_318184.1 CDS Nwi_1571 NC_007406.1 1716361 1720158 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1716361..1720158 Nitrobacter winogradskyi Nb-255 3676775 YP_318185.1 CDS Nwi_1572 NC_007406.1 1720430 1721335 R integrase catalytic subunit complement(1720430..1721335) Nitrobacter winogradskyi Nb-255 3676738 YP_318186.1 CDS Nwi_1573 NC_007406.1 1721332 1721661 R transposase IS3/IS911 complement(1721332..1721661) Nitrobacter winogradskyi Nb-255 3676739 YP_318187.1 CDS Nwi_1574 NC_007406.1 1722016 1722264 D hypothetical protein 1722016..1722264 Nitrobacter winogradskyi Nb-255 3676740 YP_318188.1 CDS Nwi_1575 NC_007406.1 1722783 1723493 R polyphosphate glucokinase complement(1722783..1723493) Nitrobacter winogradskyi Nb-255 3676741 YP_318189.1 CDS Nwi_1576 NC_007406.1 1723767 1724639 D YghU; B2989; one of eight glutathione transferases from E. coli; glutathione S-transferase 1723767..1724639 Nitrobacter winogradskyi Nb-255 3676742 YP_318190.1 CDS fabG NC_007406.1 1724688 1725368 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1724688..1725368 Nitrobacter winogradskyi Nb-255 3676743 YP_318191.1 CDS Nwi_1578 NC_007406.1 1725674 1726216 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1725674..1726216 Nitrobacter winogradskyi Nb-255 3676744 YP_318192.1 CDS Nwi_1579 NC_007406.1 1726254 1726931 D hypothetical protein 1726254..1726931 Nitrobacter winogradskyi Nb-255 3676745 YP_318193.1 CDS Nwi_1580 NC_007406.1 1726969 1727220 R hypothetical protein complement(1726969..1727220) Nitrobacter winogradskyi Nb-255 3676746 YP_318194.1 CDS Nwi_1581 NC_007406.1 1727286 1727585 D hypothetical protein 1727286..1727585 Nitrobacter winogradskyi Nb-255 3676747 YP_318195.1 CDS Nwi_1582 NC_007406.1 1727883 1728134 D hypothetical protein 1727883..1728134 Nitrobacter winogradskyi Nb-255 3676748 YP_318196.1 CDS Nwi_1583 NC_007406.1 1728296 1728856 R CreA family protein complement(1728296..1728856) Nitrobacter winogradskyi Nb-255 3676749 YP_318197.1 CDS Nwi_1584 NC_007406.1 1729058 1730539 D hypothetical protein 1729058..1730539 Nitrobacter winogradskyi Nb-255 3676750 YP_318198.1 CDS Nwi_1585 NC_007406.1 1730712 1731638 D polysaccharide deacetylase 1730712..1731638 Nitrobacter winogradskyi Nb-255 3676751 YP_318199.1 CDS Nwi_1586 NC_007406.1 1731660 1732208 D hypothetical protein 1731660..1732208 Nitrobacter winogradskyi Nb-255 3676752 YP_318200.1 CDS Nwi_1587 NC_007406.1 1732241 1734523 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(1732241..1734523) Nitrobacter winogradskyi Nb-255 3676753 YP_318201.1 CDS aspS NC_007406.1 1734710 1736482 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1734710..1736482) Nitrobacter winogradskyi Nb-255 3676754 YP_318202.1 CDS Nwi_1589 NC_007406.1 1736709 1737857 D ribonuclease D 1736709..1737857 Nitrobacter winogradskyi Nb-255 3676755 YP_318203.1 CDS Nwi_1590 NC_007406.1 1737934 1739244 R hemolysins and-like proteins complement(1737934..1739244) Nitrobacter winogradskyi Nb-255 3676756 YP_318204.1 CDS Nwi_1591 NC_007406.1 1739782 1740180 D transposase 1739782..1740180 Nitrobacter winogradskyi Nb-255 3676757 YP_318205.1 CDS Nwi_1592 NC_007406.1 1740195 1740563 D transposase, IS4 1740195..1740563 Nitrobacter winogradskyi Nb-255 3675964 YP_318206.1 CDS Nwi_1593 NC_007406.1 1740577 1742166 R ppx/GppA phosphatase complement(1740577..1742166) Nitrobacter winogradskyi Nb-255 3675965 YP_318207.1 CDS Nwi_1594 NC_007406.1 1742096 1744297 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(1742096..1744297) Nitrobacter winogradskyi Nb-255 3675966 YP_318208.1 CDS Nwi_1595 NC_007406.1 1744543 1745223 R hypothetical protein complement(1744543..1745223) Nitrobacter winogradskyi Nb-255 3675967 YP_318209.1 CDS Nwi_1596 NC_007406.1 1745269 1745811 R CDP-alcohol phosphatidyltransferase complement(1745269..1745811) Nitrobacter winogradskyi Nb-255 3675968 YP_318210.1 CDS Nwi_1597 NC_007406.1 1746047 1747120 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1746047..1747120 Nitrobacter winogradskyi Nb-255 3675969 YP_318211.1 CDS Nwi_1598 NC_007406.1 1747145 1747798 D phosphoribosylglycinamide formyltransferase 1747145..1747798 Nitrobacter winogradskyi Nb-255 3675970 YP_318212.1 CDS Nwi_1599 NC_007406.1 1748019 1748222 R cold-shock protein, DNA-binding complement(1748019..1748222) Nitrobacter winogradskyi Nb-255 3675971 YP_318213.1 CDS Nwi_1600 NC_007406.1 1748580 1749458 R hypothetical protein complement(1748580..1749458) Nitrobacter winogradskyi Nb-255 3675972 YP_318214.1 CDS ndk NC_007406.1 1749790 1750212 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1749790..1750212) Nitrobacter winogradskyi Nb-255 3675973 YP_318215.1 CDS Nwi_1602 NC_007406.1 1750202 1750564 R hypothetical protein complement(1750202..1750564) Nitrobacter winogradskyi Nb-255 3675974 YP_318216.1 CDS Nwi_1603 NC_007406.1 1750536 1750742 D hypothetical protein 1750536..1750742 Nitrobacter winogradskyi Nb-255 3675975 YP_318217.1 CDS Nwi_1604 NC_007406.1 1750796 1752802 R carbamoyl-phosphate synthetase large subunit complement(1750796..1752802) Nitrobacter winogradskyi Nb-255 3675976 YP_318218.1 CDS Nwi_1605 NC_007406.1 1752805 1754409 R carboxyl transferase complement(1752805..1754409) Nitrobacter winogradskyi Nb-255 3675977 YP_318219.1 CDS Nwi_1606 NC_007406.1 1754644 1754991 R ETC complex I subunit region complement(1754644..1754991) Nitrobacter winogradskyi Nb-255 3675978 YP_318220.1 CDS Nwi_1607 NC_007406.1 1755207 1755557 R hypothetical protein complement(1755207..1755557) Nitrobacter winogradskyi Nb-255 3675979 YP_318221.1 CDS Nwi_1608 NC_007406.1 1755802 1756293 R hypothetical protein complement(1755802..1756293) Nitrobacter winogradskyi Nb-255 3675981 YP_318222.1 CDS Nwi_1609 NC_007406.1 1756446 1757099 R cold-shock protein, DNA-binding complement(1756446..1757099) Nitrobacter winogradskyi Nb-255 3675346 YP_318223.1 CDS Nwi_1610 NC_007406.1 1757849 1758295 R hypothetical protein complement(1757849..1758295) Nitrobacter winogradskyi Nb-255 3675347 YP_318224.1 CDS Nwi_1611 NC_007406.1 1758734 1759183 D glyoxalase/bleomycin resistance protein/dioxygenase 1758734..1759183 Nitrobacter winogradskyi Nb-255 3675348 YP_318225.1 CDS Nwi_1612 NC_007406.1 1760317 1760694 D hypothetical protein 1760317..1760694 Nitrobacter winogradskyi Nb-255 3675350 YP_318226.1 CDS Nwi_1613 NC_007406.1 1760682 1761527 D hypothetical protein 1760682..1761527 Nitrobacter winogradskyi Nb-255 3675351 YP_318227.1 CDS Nwi_1614 NC_007406.1 1761538 1761933 R hypothetical protein complement(1761538..1761933) Nitrobacter winogradskyi Nb-255 3675352 YP_318228.1 CDS Nwi_1615 NC_007406.1 1761930 1763945 R hypothetical protein complement(1761930..1763945) Nitrobacter winogradskyi Nb-255 3675353 YP_318229.1 CDS Nwi_1616 NC_007406.1 1763947 1765560 R phage terminase complement(1763947..1765560) Nitrobacter winogradskyi Nb-255 3675354 YP_318230.1 CDS Nwi_1617 NC_007406.1 1765560 1765955 R phage terminase, small subunit , P27 complement(1765560..1765955) Nitrobacter winogradskyi Nb-255 3675355 YP_318231.1 CDS Nwi_1618 NC_007406.1 1765955 1767004 R hypothetical protein complement(1765955..1767004) Nitrobacter winogradskyi Nb-255 3675356 YP_318232.1 CDS Nwi_1619 NC_007406.1 1767111 1767440 R phage head-tail adaptor complement(1767111..1767440) Nitrobacter winogradskyi Nb-255 3675357 YP_318233.1 CDS Nwi_1620 NC_007406.1 1767422 1767856 R hypothetical protein complement(1767422..1767856) Nitrobacter winogradskyi Nb-255 3675358 YP_318234.1 CDS Nwi_1621 NC_007406.1 1767853 1768278 R Phage protein, HK97, gp10 complement(1767853..1768278) Nitrobacter winogradskyi Nb-255 3675359 YP_318235.1 CDS Nwi_1622 NC_007406.1 1768268 1768588 R phage protein DNA packaging protein complement(1768268..1768588) Nitrobacter winogradskyi Nb-255 3675360 YP_318236.1 CDS Nwi_1623 NC_007406.1 1768585 1768896 R hypothetical protein complement(1768585..1768896) Nitrobacter winogradskyi Nb-255 3675361 YP_318237.1 CDS Nwi_1624 NC_007406.1 1769326 1769718 R hypothetical protein complement(1769326..1769718) Nitrobacter winogradskyi Nb-255 3675362 YP_318238.1 CDS Nwi_1625 NC_007406.1 1769731 1770888 R Phage major capsid protein, HK97 complement(1769731..1770888) Nitrobacter winogradskyi Nb-255 3675363 YP_318239.1 CDS Nwi_1626 NC_007406.1 1770894 1771391 R peptidase U35 complement(1770894..1771391) Nitrobacter winogradskyi Nb-255 3675418 YP_318240.1 CDS Nwi_1627 NC_007406.1 1771573 1771962 R hypothetical protein complement(1771573..1771962) Nitrobacter winogradskyi Nb-255 3675419 YP_318241.1 CDS Nwi_1628 NC_007406.1 1771955 1773133 R Phage portal protein, HK97 complement(1771955..1773133) Nitrobacter winogradskyi Nb-255 3675420 YP_318242.1 CDS Nwi_1629 NC_007406.1 1773840 1775840 R ATPase complement(1773840..1775840) Nitrobacter winogradskyi Nb-255 3675421 YP_318243.1 CDS Nwi_1630 NC_007406.1 1775898 1776137 R hypothetical protein complement(1775898..1776137) Nitrobacter winogradskyi Nb-255 3675422 YP_318244.1 CDS Nwi_1631 NC_007406.1 1776134 1776400 R hypothetical protein complement(1776134..1776400) Nitrobacter winogradskyi Nb-255 3675423 YP_318245.1 CDS Nwi_1632 NC_007406.1 1776397 1776714 R hypothetical protein complement(1776397..1776714) Nitrobacter winogradskyi Nb-255 3675424 YP_318246.1 CDS Nwi_1633 NC_007406.1 1776736 1777824 R phage integrase complement(1776736..1777824) Nitrobacter winogradskyi Nb-255 3675425 YP_318247.1 CDS Nwi_1634 NC_007406.1 1778303 1778728 D hypothetical protein 1778303..1778728 Nitrobacter winogradskyi Nb-255 3675426 YP_318248.1 CDS Nwi_1635 NC_007406.1 1779076 1779450 D hypothetical protein 1779076..1779450 Nitrobacter winogradskyi Nb-255 3675427 YP_318249.1 CDS Nwi_1636 NC_007406.1 1779756 1780046 D hypothetical protein 1779756..1780046 Nitrobacter winogradskyi Nb-255 3675428 YP_318250.1 CDS Nwi_1637 NC_007406.1 1780153 1780719 R hypothetical protein complement(1780153..1780719) Nitrobacter winogradskyi Nb-255 3675429 YP_318251.1 CDS Nwi_1638 NC_007406.1 1780899 1781711 R PA-phosphatase-like phosphoesterase complement(1780899..1781711) Nitrobacter winogradskyi Nb-255 3675430 YP_318252.1 CDS Nwi_1639 NC_007406.1 1781949 1782251 D hypothetical protein 1781949..1782251 Nitrobacter winogradskyi Nb-255 3675431 YP_318253.1 CDS Nwi_1640 NC_007406.1 1782515 1782775 R hypothetical protein complement(1782515..1782775) Nitrobacter winogradskyi Nb-255 3675432 YP_318254.1 CDS Nwi_1641 NC_007406.1 1782884 1783984 R hypothetical protein complement(1782884..1783984) Nitrobacter winogradskyi Nb-255 3675433 YP_318255.1 CDS Nwi_1642 NC_007406.1 1783981 1785024 R tRNA synthetase complement(1783981..1785024) Nitrobacter winogradskyi Nb-255 3675434 YP_318256.1 CDS Nwi_1643 NC_007406.1 1785169 1785735 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1785169..1785735 Nitrobacter winogradskyi Nb-255 3675435 YP_318257.1 CDS Nwi_1644 NC_007406.1 1785805 1787028 D lytic murein transglycosylase 1785805..1787028 Nitrobacter winogradskyi Nb-255 3675436 YP_318258.1 CDS Nwi_1645 NC_007406.1 1787070 1788911 R RecJ exonuclease complement(1787070..1788911) Nitrobacter winogradskyi Nb-255 3675437 YP_318259.1 CDS glpX NC_007406.1 1788963 1789958 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1788963..1789958) Nitrobacter winogradskyi Nb-255 3675291 YP_318260.1 CDS Nwi_1647 NC_007406.1 1790019 1791341 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1790019..1791341) Nitrobacter winogradskyi Nb-255 3675292 YP_318261.1 CDS Nwi_1648 NC_007406.1 1791418 1792635 R aminotransferase complement(1791418..1792635) Nitrobacter winogradskyi Nb-255 3675293 YP_318262.1 CDS Nwi_1649 NC_007406.1 1792871 1793176 R hypothetical protein complement(1792871..1793176) Nitrobacter winogradskyi Nb-255 3675294 YP_318263.1 CDS Nwi_1650 NC_007406.1 1793436 1795265 D Poly(R)-hydroxyalkanoic acid synthase, class I 1793436..1795265 Nitrobacter winogradskyi Nb-255 3674635 YP_318264.1 CDS Nwi_1651 NC_007406.1 1795351 1796379 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(1795351..1796379) Nitrobacter winogradskyi Nb-255 3675386 YP_318265.1 CDS Nwi_1652 NC_007406.1 1796464 1796994 R hypothetical protein complement(1796464..1796994) Nitrobacter winogradskyi Nb-255 3675387 YP_318266.1 CDS Nwi_1653 NC_007406.1 1797177 1799234 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1797177..1799234 Nitrobacter winogradskyi Nb-255 3675388 YP_318267.1 CDS Nwi_1654 NC_007406.1 1799369 1799779 D glyoxalase/bleomycin resistance protein/dioxygenase 1799369..1799779 Nitrobacter winogradskyi Nb-255 3675389 YP_318268.1 CDS Nwi_1655 NC_007406.1 1799818 1801077 R hypothetical protein complement(1799818..1801077) Nitrobacter winogradskyi Nb-255 3675390 YP_318269.1 CDS Nwi_1656 NC_007406.1 1801104 1802603 R peptidase C14, caspase catalytic subunit p20 complement(1801104..1802603) Nitrobacter winogradskyi Nb-255 3675391 YP_318270.1 CDS Nwi_1657 NC_007406.1 1802960 1804411 D DEAD/DEAH box helicase 1802960..1804411 Nitrobacter winogradskyi Nb-255 3675392 YP_318271.1 CDS Nwi_1658 NC_007406.1 1804565 1805629 D diguanylate cyclase 1804565..1805629 Nitrobacter winogradskyi Nb-255 3675393 YP_318272.1 CDS Nwi_1659 NC_007406.1 1805905 1806309 R HesB/YadR/YfhF complement(1805905..1806309) Nitrobacter winogradskyi Nb-255 3675394 YP_318273.1 CDS Nwi_1660 NC_007406.1 1806368 1806748 R hypothetical protein complement(1806368..1806748) Nitrobacter winogradskyi Nb-255 3675395 YP_318274.1 CDS Nwi_1661 NC_007406.1 1806745 1807989 R cysteine desulfurase complement(1806745..1807989) Nitrobacter winogradskyi Nb-255 3675396 YP_318275.1 CDS Nwi_1662 NC_007406.1 1808154 1809476 R FeS assembly protein SufD complement(1808154..1809476) Nitrobacter winogradskyi Nb-255 3675397 YP_318276.1 CDS Nwi_1663 NC_007406.1 1809540 1810289 R FeS assembly ATPase SufC complement(1809540..1810289) Nitrobacter winogradskyi Nb-255 3675398 YP_318277.1 CDS Nwi_1664 NC_007406.1 1810433 1811914 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase complement(1810433..1811914) Nitrobacter winogradskyi Nb-255 3675399 YP_318278.1 CDS Nwi_1665 NC_007406.1 1811995 1813176 R cysteine sulfinate desulfinase/cysteine desulfurase complement(1811995..1813176) Nitrobacter winogradskyi Nb-255 3674697 YP_318279.1 CDS Nwi_1666 NC_007406.1 1813358 1814005 D hypothetical protein 1813358..1814005 Nitrobacter winogradskyi Nb-255 3674698 YP_318280.1 CDS anmK NC_007406.1 1814056 1815156 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1814056..1815156) Nitrobacter winogradskyi Nb-255 3674699 YP_318281.1 CDS Nwi_1668 NC_007406.1 1815311 1816564 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1815311..1816564 Nitrobacter winogradskyi Nb-255 3674700 YP_318282.1 CDS Nwi_1669 NC_007406.1 1816589 1820221 R hypothetical protein complement(1816589..1820221) Nitrobacter winogradskyi Nb-255 3674701 YP_318283.1 CDS Nwi_1670 NC_007406.1 1820445 1821074 D alkyl hydroperoxide reductase 1820445..1821074 Nitrobacter winogradskyi Nb-255 3674702 YP_318284.1 CDS Nwi_1671 NC_007406.1 1821175 1822539 D peptidase M23B 1821175..1822539 Nitrobacter winogradskyi Nb-255 3674703 YP_318285.1 CDS Nwi_1672 NC_007406.1 1822719 1822991 R hypothetical protein complement(1822719..1822991) Nitrobacter winogradskyi Nb-255 3674704 YP_318286.1 CDS Nwi_1673 NC_007406.1 1823066 1824943 D ABC transporter ATPase 1823066..1824943 Nitrobacter winogradskyi Nb-255 3674705 YP_318287.1 CDS Nwi_1674 NC_007406.1 1825077 1825634 R hypothetical protein complement(1825077..1825634) Nitrobacter winogradskyi Nb-255 3674706 YP_318288.1 CDS Nwi_1675 NC_007406.1 1825764 1826216 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1825764..1826216) Nitrobacter winogradskyi Nb-255 3674707 YP_318289.1 CDS Nwi_1676 NC_007406.1 1826213 1827715 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1826213..1827715) Nitrobacter winogradskyi Nb-255 3674708 YP_318290.1 CDS Nwi_1677 NC_007406.1 1828078 1829250 D permease YjgP/YjgQ 1828078..1829250 Nitrobacter winogradskyi Nb-255 3674709 YP_318291.1 CDS Nwi_1678 NC_007406.1 1829247 1830344 D permease YjgP/YjgQ 1829247..1830344 Nitrobacter winogradskyi Nb-255 3674710 YP_318292.1 CDS Nwi_1679 NC_007406.1 1830344 1832833 D organic solvent tolerance protein 1830344..1832833 Nitrobacter winogradskyi Nb-255 3674711 YP_318293.1 CDS Nwi_1680 NC_007406.1 1833024 1833968 D hypothetical protein 1833024..1833968 Nitrobacter winogradskyi Nb-255 3674712 YP_318294.1 CDS pdxA NC_007406.1 1834071 1835078 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1834071..1835078 Nitrobacter winogradskyi Nb-255 3674713 YP_318295.1 CDS ksgA NC_007406.1 1835075 1835938 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1835075..1835938 Nitrobacter winogradskyi Nb-255 3674714 YP_318296.1 CDS gmk NC_007406.1 1835935 1836594 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1835935..1836594) Nitrobacter winogradskyi Nb-255 3674715 YP_318297.1 CDS Nwi_1684 NC_007406.1 1836598 1837485 R hypothetical protein complement(1836598..1837485) Nitrobacter winogradskyi Nb-255 3674716 YP_318298.1 CDS Nwi_1685 NC_007406.1 1837922 1839145 R aminodeoxychorismate lyase complement(1837922..1839145) Nitrobacter winogradskyi Nb-255 3674539 YP_318299.1 CDS Nwi_1686 NC_007406.1 1839271 1840536 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(1839271..1840536) Nitrobacter winogradskyi Nb-255 3674540 YP_318300.1 CDS acpP NC_007406.1 1840631 1840870 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1840631..1840870) Nitrobacter winogradskyi Nb-255 3674541 YP_318301.1 CDS Nwi_1688 NC_007406.1 1841145 1841882 R 3-oxoacyl-ACP reductase complement(1841145..1841882) Nitrobacter winogradskyi Nb-255 3674542 YP_318302.1 CDS Nwi_1689 NC_007406.1 1842250 1842513 D hypothetical protein 1842250..1842513 Nitrobacter winogradskyi Nb-255 3674543 YP_318303.1 CDS Nwi_1690 NC_007406.1 1842571 1843524 R ACP S-malonyltransferase complement(1842571..1843524) Nitrobacter winogradskyi Nb-255 3674544 YP_318304.1 CDS rpsF NC_007406.1 1843900 1844319 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1843900..1844319 Nitrobacter winogradskyi Nb-255 3674545 YP_318305.1 CDS rpsR NC_007406.1 1844325 1844564 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1844325..1844564 Nitrobacter winogradskyi Nb-255 3674546 YP_318306.1 CDS Nwi_1693 NC_007406.1 1844698 1845708 D hypothetical protein 1844698..1845708 Nitrobacter winogradskyi Nb-255 3674547 YP_318307.1 CDS rplI NC_007406.1 1845747 1846355 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1845747..1846355 Nitrobacter winogradskyi Nb-255 3677206 YP_318308.1 CDS Nwi_1695 NC_007406.1 1846728 1849133 R ATPase AAA complement(1846728..1849133) Nitrobacter winogradskyi Nb-255 3675295 YP_318309.1 CDS clpS NC_007406.1 1849386 1849796 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(1849386..1849796) Nitrobacter winogradskyi Nb-255 3675719 YP_318310.1 CDS Nwi_1697 NC_007406.1 1850246 1852063 D hypothetical protein 1850246..1852063 Nitrobacter winogradskyi Nb-255 3675720 YP_318311.1 CDS Nwi_1698 NC_007406.1 1852240 1852578 R hypothetical protein complement(1852240..1852578) Nitrobacter winogradskyi Nb-255 3675721 YP_318312.1 CDS Nwi_1699 NC_007406.1 1852951 1854714 D peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 1852951..1854714 Nitrobacter winogradskyi Nb-255 3675722 YP_318313.1 CDS Nwi_1700 NC_007406.1 1855052 1855948 R molecular chaperone DnaJ complement(1855052..1855948) Nitrobacter winogradskyi Nb-255 3675723 YP_318314.1 CDS Nwi_1701 NC_007406.1 1855968 1856732 R hypothetical protein complement(1855968..1856732) Nitrobacter winogradskyi Nb-255 3675724 YP_318315.1 CDS panC NC_007406.1 1857059 1857910 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 1857059..1857910 Nitrobacter winogradskyi Nb-255 3675725 YP_318316.1 CDS Nwi_1703 NC_007406.1 1857944 1858408 R hypothetical protein complement(1857944..1858408) Nitrobacter winogradskyi Nb-255 3675726 YP_318317.1 CDS Nwi_1704 NC_007406.1 1858408 1859328 R hypothetical protein complement(1858408..1859328) Nitrobacter winogradskyi Nb-255 3674717 YP_318318.1 CDS Nwi_1705 NC_007406.1 1859830 1860021 R hypothetical protein complement(1859830..1860021) Nitrobacter winogradskyi Nb-255 3674718 YP_318319.1 CDS Nwi_1706 NC_007406.1 1860284 1860940 R glutathione S-transferase complement(1860284..1860940) Nitrobacter winogradskyi Nb-255 3674719 YP_318320.1 CDS Nwi_1707 NC_007406.1 1861190 1861459 D hypothetical protein 1861190..1861459 Nitrobacter winogradskyi Nb-255 3674720 YP_318321.1 CDS Nwi_1708 NC_007406.1 1861474 1862316 R hypothetical protein complement(1861474..1862316) Nitrobacter winogradskyi Nb-255 3674721 YP_318322.1 CDS Nwi_1709 NC_007406.1 1862329 1862721 R XRE family transcriptional regulator complement(1862329..1862721) Nitrobacter winogradskyi Nb-255 3674722 YP_318323.1 CDS Nwi_1710 NC_007406.1 1862823 1864106 D polysaccharide deacetylase 1862823..1864106 Nitrobacter winogradskyi Nb-255 3674723 YP_318324.1 CDS Nwi_1711 NC_007406.1 1864235 1864468 R hypothetical protein complement(1864235..1864468) Nitrobacter winogradskyi Nb-255 3674724 YP_318325.1 CDS Nwi_1712 NC_007406.1 1864707 1867442 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1864707..1867442 Nitrobacter winogradskyi Nb-255 3674725 YP_318326.1 CDS Nwi_1713 NC_007406.1 1867458 1869806 D 3'-5' exoribonuclease 1867458..1869806 Nitrobacter winogradskyi Nb-255 3674726 YP_318327.1 CDS Nwi_1714 NC_007406.1 1869803 1870243 D hypothetical protein 1869803..1870243 Nitrobacter winogradskyi Nb-255 3674727 YP_318328.1 CDS Nwi_1715 NC_007406.1 1870271 1871239 R peptide chain release factor 2 complement(1870271..1871239) Nitrobacter winogradskyi Nb-255 3674728 YP_318329.1 CDS Nwi_1716 NC_007406.1 1871714 1874209 R penicillin-binding protein 1A complement(1871714..1874209) Nitrobacter winogradskyi Nb-255 3674729 YP_318330.1 CDS Nwi_1717 NC_007406.1 1874527 1875477 R integrase catalytic subunit complement(1874527..1875477) Nitrobacter winogradskyi Nb-255 3674730 YP_318331.1 CDS Nwi_1718 NC_007406.1 1875939 1876304 R ISBm1, transposase orfA complement(1875939..1876304) Nitrobacter winogradskyi Nb-255 3674731 YP_318332.1 CDS Nwi_1719 NC_007406.1 1876376 1877644 R cell wall hydrolase/autolysin complement(1876376..1877644) Nitrobacter winogradskyi Nb-255 3674732 YP_318333.1 CDS Nwi_1720 NC_007406.1 1878284 1881463 D ribonuclease E and G 1878284..1881463 Nitrobacter winogradskyi Nb-255 3674733 YP_318334.1 CDS Nwi_1721 NC_007406.1 1881649 1882620 R thiamine-monophosphate kinase complement(1881649..1882620) Nitrobacter winogradskyi Nb-255 3674734 YP_318335.1 CDS nusB NC_007406.1 1882810 1883295 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1882810..1883295) Nitrobacter winogradskyi Nb-255 3674735 YP_318336.1 CDS ribH NC_007406.1 1883303 1883794 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1883303..1883794) Nitrobacter winogradskyi Nb-255 3674736 YP_318337.2 CDS Nwi_1724 NC_007406.1 1884465 1885094 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1884465..1885094) Nitrobacter winogradskyi Nb-255 3675128 YP_318338.1 CDS Nwi_1725 NC_007406.1 1885267 1886430 R riboflavin biosynthesis protein RibD complement(1885267..1886430) Nitrobacter winogradskyi Nb-255 3675129 YP_318339.1 CDS nrdR NC_007406.1 1886427 1886909 R transcriptional regulator NrdR complement(1886427..1886909) Nitrobacter winogradskyi Nb-255 3675130 YP_318340.1 CDS glyA NC_007406.1 1887041 1888342 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1887041..1888342) Nitrobacter winogradskyi Nb-255 3675131 YP_318341.1 CDS Nwi_1728 NC_007406.1 1888790 1889089 R hypothetical protein complement(1888790..1889089) Nitrobacter winogradskyi Nb-255 3675132 YP_318342.1 CDS Nwi_1729 NC_007406.1 1889254 1890255 D hypothetical protein 1889254..1890255 Nitrobacter winogradskyi Nb-255 3675133 YP_318343.1 CDS Nwi_1730 NC_007406.1 1890535 1890828 R hypothetical protein complement(1890535..1890828) Nitrobacter winogradskyi Nb-255 3675135 YP_318344.1 CDS lipB NC_007406.1 1890841 1891536 D lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism; lipoyltransferase 1890841..1891536 Nitrobacter winogradskyi Nb-255 3675136 YP_318345.1 CDS Nwi_1732 NC_007406.1 1891602 1894196 R TonB-dependent siderophore receptor complement(1891602..1894196) Nitrobacter winogradskyi Nb-255 3675137 YP_318346.1 CDS Nwi_1733 NC_007406.1 1894312 1895271 R FecR protein complement(1894312..1895271) Nitrobacter winogradskyi Nb-255 3675138 YP_318347.1 CDS Nwi_1734 NC_007406.1 1895378 1896088 R FecI like protein complement(1895378..1896088) Nitrobacter winogradskyi Nb-255 3675139 YP_318348.1 CDS Nwi_1735 NC_007406.1 1896134 1896433 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(1896134..1896433) Nitrobacter winogradskyi Nb-255 3675140 YP_318349.1 CDS Nwi_1736 NC_007406.1 1896509 1898524 R propionyl-coenzyme A carboxylase alpha polypeptide complement(1896509..1898524) Nitrobacter winogradskyi Nb-255 3675141 YP_318350.1 CDS Nwi_1737 NC_007406.1 1898742 1899314 R hypothetical protein complement(1898742..1899314) Nitrobacter winogradskyi Nb-255 3675142 YP_318351.1 CDS Nwi_1738 NC_007406.1 1899699 1900358 D alkyl hydroperoxide reductase 1899699..1900358 Nitrobacter winogradskyi Nb-255 3675143 YP_318352.1 CDS Nwi_1739 NC_007406.1 1900674 1901801 D zinc-containing alcohol dehydrogenase superfamily protein 1900674..1901801 Nitrobacter winogradskyi Nb-255 3675144 YP_318353.1 CDS Nwi_1740 NC_007406.1 1901937 1904198 R adenylyl cyclase class-3/4/guanylyl cyclase complement(1901937..1904198) Nitrobacter winogradskyi Nb-255 3675145 YP_318354.1 CDS Nwi_1741 NC_007406.1 1904195 1904491 R hypothetical protein complement(1904195..1904491) Nitrobacter winogradskyi Nb-255 3676463 YP_318355.1 CDS Nwi_1742 NC_007406.1 1904560 1905915 R hypothetical protein complement(1904560..1905915) Nitrobacter winogradskyi Nb-255 3676464 YP_318356.1 CDS Nwi_1743 NC_007406.1 1907081 1907476 D hypothetical protein 1907081..1907476 Nitrobacter winogradskyi Nb-255 3676466 YP_318357.1 CDS Nwi_1744 NC_007406.1 1907483 1910164 R Signal transduction histidine kinase complement(1907483..1910164) Nitrobacter winogradskyi Nb-255 3676467 YP_318358.1 CDS Nwi_1745 NC_007406.1 1910246 1913743 R Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase complement(1910246..1913743) Nitrobacter winogradskyi Nb-255 3676468 YP_318359.1 CDS Nwi_1746 NC_007406.1 1914210 1914473 D hypothetical protein 1914210..1914473 Nitrobacter winogradskyi Nb-255 3676469 YP_318360.1 CDS hppA NC_007406.1 1914909 1917029 R pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase complement(1914909..1917029) Nitrobacter winogradskyi Nb-255 3676470 YP_318361.1 CDS Nwi_1748 NC_007406.1 1917281 1918468 R class I and II aminotransferase complement(1917281..1918468) Nitrobacter winogradskyi Nb-255 3676471 YP_318362.1 CDS Nwi_1749 NC_007406.1 1918562 1919995 D peptidase M48, Ste24p 1918562..1919995 Nitrobacter winogradskyi Nb-255 3676472 YP_318363.1 CDS Nwi_1750 NC_007406.1 1920038 1920802 D DSBA oxidoreductase 1920038..1920802 Nitrobacter winogradskyi Nb-255 3676473 YP_318364.1 CDS Nwi_1751 NC_007406.1 1921173 1921643 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1921173..1921643 Nitrobacter winogradskyi Nb-255 3676474 YP_318365.1 CDS Nwi_1752 NC_007406.1 1921685 1922170 D acetyl-CoA biotin carboxyl carrier 1921685..1922170 Nitrobacter winogradskyi Nb-255 3676475 YP_318366.1 CDS Nwi_1753 NC_007406.1 1922196 1923551 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 1922196..1923551 Nitrobacter winogradskyi Nb-255 3676476 YP_318367.1 CDS Nwi_1754 NC_007406.1 1923605 1925221 D bacteriophytochrome 1923605..1925221 Nitrobacter winogradskyi Nb-255 3676477 YP_318368.1 CDS Nwi_1755 NC_007406.1 1925218 1925658 D response regulator receiver 1925218..1925658 Nitrobacter winogradskyi Nb-255 3676478 YP_318369.1 CDS Nwi_1756 NC_007406.1 1925655 1926743 D Signal transduction histidine kinase 1925655..1926743 Nitrobacter winogradskyi Nb-255 3676479 YP_318370.1 CDS aat NC_007406.1 1926936 1927613 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1926936..1927613 Nitrobacter winogradskyi Nb-255 3676480 YP_318371.1 CDS Nwi_1758 NC_007406.1 1927795 1928988 R hypothetical protein complement(1927795..1928988) Nitrobacter winogradskyi Nb-255 3675638 YP_318372.1 CDS Nwi_1759 NC_007406.1 1929123 1930931 D hypothetical protein 1929123..1930931 Nitrobacter winogradskyi Nb-255 3675639 YP_318373.1 CDS Nwi_1760 NC_007406.1 1930981 1931472 R Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase complement(1930981..1931472) Nitrobacter winogradskyi Nb-255 3675640 YP_318374.1 CDS Nwi_1761 NC_007406.1 1931834 1932205 D acetyltransferase 1931834..1932205 Nitrobacter winogradskyi Nb-255 3675641 YP_318375.1 CDS Nwi_1762 NC_007406.1 1932337 1932711 R hypothetical protein complement(1932337..1932711) Nitrobacter winogradskyi Nb-255 3675642 YP_318376.1 CDS Nwi_1763 NC_007406.1 1933055 1933984 D hypothetical protein 1933055..1933984 Nitrobacter winogradskyi Nb-255 3675643 YP_318377.1 CDS Nwi_1764 NC_007406.1 1934176 1935609 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1934176..1935609 Nitrobacter winogradskyi Nb-255 3675644 YP_318378.1 CDS Nwi_1765 NC_007406.1 1935637 1936737 D serine/threonine protein kinase 1935637..1936737 Nitrobacter winogradskyi Nb-255 3675645 YP_318379.1 CDS Nwi_1766 NC_007406.1 1936744 1937604 R squalene/phytoene synthase complement(1936744..1937604) Nitrobacter winogradskyi Nb-255 3675646 YP_318380.1 CDS Nwi_1767 NC_007406.1 1937751 1938137 R hypothetical protein complement(1937751..1938137) Nitrobacter winogradskyi Nb-255 3675647 YP_318381.1 CDS secF NC_007406.1 1938134 1939192 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1938134..1939192) Nitrobacter winogradskyi Nb-255 3675648 YP_318382.1 CDS secD NC_007406.1 1939209 1940807 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1939209..1940807) Nitrobacter winogradskyi Nb-255 3675649 YP_318383.1 CDS Nwi_1770 NC_007406.1 1940841 1941242 R preprotein translocase subunit YajC complement(1940841..1941242) Nitrobacter winogradskyi Nb-255 3675650 YP_318384.1 CDS Nwi_1771 NC_007406.1 1941430 1942404 D hypothetical protein 1941430..1942404 Nitrobacter winogradskyi Nb-255 3675651 YP_318385.1 CDS Nwi_1772 NC_007406.1 1942544 1943905 R peptidase M23B complement(1942544..1943905) Nitrobacter winogradskyi Nb-255 3675652 YP_318386.1 CDS Nwi_1773 NC_007406.1 1944054 1944707 R protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(1944054..1944707) Nitrobacter winogradskyi Nb-255 3675653 YP_318387.1 CDS Nwi_1774 NC_007406.1 1944968 1945348 D response regulator receiver 1944968..1945348 Nitrobacter winogradskyi Nb-255 3675654 YP_318388.1 CDS surE NC_007406.1 1945414 1946181 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(1945414..1946181) Nitrobacter winogradskyi Nb-255 3675655 YP_318389.1 CDS Nwi_1776 NC_007406.1 1946505 1947998 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1946505..1947998) Nitrobacter winogradskyi Nb-255 3675656 YP_318390.1 CDS Nwi_1777 NC_007406.1 1948106 1948915 R sec-independent periplasmic protein translocase complement(1948106..1948915) Nitrobacter winogradskyi Nb-255 3675657 YP_318391.1 CDS Nwi_1778 NC_007406.1 1948912 1949454 R twin-arginine translocation protein TatB complement(1948912..1949454) Nitrobacter winogradskyi Nb-255 3676814 YP_318392.1 CDS tatA NC_007406.1 1949634 1949870 R TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA complement(1949634..1949870) Nitrobacter winogradskyi Nb-255 3676815 YP_318393.1 CDS Nwi_1780 NC_007406.1 1950129 1950791 R protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(1950129..1950791) Nitrobacter winogradskyi Nb-255 3676816 YP_318394.1 CDS Nwi_1781 NC_007406.1 1951672 1951917 D hypothetical protein 1951672..1951917 Nitrobacter winogradskyi Nb-255 3676818 YP_318395.1 CDS Nwi_1782 NC_007406.1 1952076 1952309 D hypothetical protein 1952076..1952309 Nitrobacter winogradskyi Nb-255 3676819 YP_318396.1 CDS Nwi_1783 NC_007406.1 1952684 1952860 R hypothetical protein complement(1952684..1952860) Nitrobacter winogradskyi Nb-255 3676820 YP_318397.1 CDS glmU NC_007406.1 1953513 1954871 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(1953513..1954871) Nitrobacter winogradskyi Nb-255 3676821 YP_318398.1 CDS Nwi_1785 NC_007406.1 1955016 1956284 D hypothetical protein 1955016..1956284 Nitrobacter winogradskyi Nb-255 3676822 YP_318399.1 CDS Nwi_1786 NC_007406.1 1956348 1956728 D hypothetical protein 1956348..1956728 Nitrobacter winogradskyi Nb-255 3676823 YP_318400.1 CDS Nwi_1787 NC_007406.1 1956688 1958286 R beta (1-6) glucans synthase complement(1956688..1958286) Nitrobacter winogradskyi Nb-255 3676824 YP_318401.1 CDS Nwi_1788 NC_007406.1 1958733 1959305 D hypothetical protein 1958733..1959305 Nitrobacter winogradskyi Nb-255 3676825 YP_318402.1 CDS Nwi_1789 NC_007406.1 1959484 1962153 D glycosyl transferase family protein 1959484..1962153 Nitrobacter winogradskyi Nb-255 3676826 YP_318403.1 CDS Nwi_1790 NC_007406.1 1962756 1962917 D hypothetical protein 1962756..1962917 Nitrobacter winogradskyi Nb-255 3677208 YP_318404.1 CDS Nwi_1791 NC_007406.1 1963129 1964274 R hypothetical protein complement(1963129..1964274) Nitrobacter winogradskyi Nb-255 3676941 YP_318405.1 CDS Nwi_1792 NC_007406.1 1964681 1965031 D hypothetical protein 1964681..1965031 Nitrobacter winogradskyi Nb-255 3677047 YP_318406.1 CDS Nwi_1793 NC_007406.1 1965049 1965546 D hypothetical protein 1965049..1965546 Nitrobacter winogradskyi Nb-255 3677048 YP_318407.1 CDS Nwi_1794 NC_007406.1 1965864 1966841 R cysteine synthase complement(1965864..1966841) Nitrobacter winogradskyi Nb-255 3677049 YP_318408.1 CDS tgt NC_007406.1 1967318 1968451 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1967318..1968451) Nitrobacter winogradskyi Nb-255 3677050 YP_318409.1 CDS queA NC_007406.1 1968448 1969530 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1968448..1969530) Nitrobacter winogradskyi Nb-255 3677051 YP_318410.1 CDS Nwi_1797 NC_007406.1 1969868 1970332 R cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1969868..1970332) Nitrobacter winogradskyi Nb-255 3677052 YP_318411.1 CDS Nwi_1798 NC_007406.1 1970373 1970933 R cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1970373..1970933) Nitrobacter winogradskyi Nb-255 3677053 YP_318412.1 CDS coaD NC_007406.1 1970966 1971463 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(1970966..1971463) Nitrobacter winogradskyi Nb-255 3677054 YP_318413.1 CDS Nwi_1800 NC_007406.1 1971993 1972247 D hypothetical protein 1971993..1972247 Nitrobacter winogradskyi Nb-255 3677055 YP_318414.1 CDS Nwi_1801 NC_007406.1 1972338 1975079 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1972338..1975079) Nitrobacter winogradskyi Nb-255 3677056 YP_318415.1 CDS Nwi_1802 NC_007406.1 1975229 1975852 D multiple antibiotic resistance (MarC)-like proteins 1975229..1975852 Nitrobacter winogradskyi Nb-255 3677057 YP_318416.1 CDS Nwi_1803 NC_007406.1 1975993 1976739 R chromosome segregation and condensation protein ScpB complement(1975993..1976739) Nitrobacter winogradskyi Nb-255 3677058 YP_318417.1 CDS Nwi_1804 NC_007406.1 1976761 1977597 R chromosome segregation and condensation protein ScpA complement(1976761..1977597) Nitrobacter winogradskyi Nb-255 3677059 YP_318418.1 CDS Nwi_1805 NC_007406.1 1977594 1978610 R glycoside hydrolase complement(1977594..1978610) Nitrobacter winogradskyi Nb-255 3677060 YP_318419.1 CDS Nwi_1806 NC_007406.1 1978658 1980070 R hypothetical protein complement(1978658..1980070) Nitrobacter winogradskyi Nb-255 3677061 YP_318420.1 CDS argS NC_007406.1 1980172 1981965 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1980172..1981965) Nitrobacter winogradskyi Nb-255 3677062 YP_318421.1 CDS Nwi_1808 NC_007406.1 1982004 1983206 R deoxyguanosinetriphosphate triphosphohydrolase complement(1982004..1983206) Nitrobacter winogradskyi Nb-255 3677063 YP_318422.1 CDS Nwi_1809 NC_007406.1 1983329 1983661 D HesB/YadR/YfhF 1983329..1983661 Nitrobacter winogradskyi Nb-255 3677064 YP_318423.1 CDS Nwi_1810 NC_007406.1 1983753 1984553 D exodeoxyribonuclease III 1983753..1984553 Nitrobacter winogradskyi Nb-255 3677065 YP_318424.1 CDS Nwi_1811 NC_007406.1 1984663 1985433 R Sel1 repeat-containing protein complement(1984663..1985433) Nitrobacter winogradskyi Nb-255 3677066 YP_318425.1 CDS Nwi_1812 NC_007406.1 1985481 1985825 R hypothetical protein complement(1985481..1985825) Nitrobacter winogradskyi Nb-255 3675854 YP_318426.1 CDS Nwi_1813 NC_007406.1 1986043 1987476 R E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1986043..1987476) Nitrobacter winogradskyi Nb-255 3675855 YP_318427.1 CDS Nwi_1814 NC_007406.1 1987495 1988460 R OmpA/MotB protein complement(1987495..1988460) Nitrobacter winogradskyi Nb-255 3675856 YP_318428.1 CDS Nwi_1815 NC_007406.1 1988489 1988833 R hypothetical protein complement(1988489..1988833) Nitrobacter winogradskyi Nb-255 3675857 YP_318429.1 CDS Nwi_1816 NC_007406.1 1988830 1990188 R branched-chain alpha-keto acid dehydrogenase subunit E2 complement(1988830..1990188) Nitrobacter winogradskyi Nb-255 3675858 YP_318430.1 CDS Nwi_1817 NC_007406.1 1990201 1991598 R catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta complement(1990201..1991598) Nitrobacter winogradskyi Nb-255 3675859 YP_318431.1 CDS Nwi_1818 NC_007406.1 1991626 1992654 R dehydrogenase, E1 component complement(1991626..1992654) Nitrobacter winogradskyi Nb-255 3675860 YP_318432.1 CDS Nwi_1819 NC_007406.1 1992839 1993156 R septum formation initiator complement(1992839..1993156) Nitrobacter winogradskyi Nb-255 3675861 YP_318433.1 CDS Nwi_1820 NC_007406.1 1993216 1993773 R NADPH-dependent FMN reductase complement(1993216..1993773) Nitrobacter winogradskyi Nb-255 3675862 YP_318434.1 CDS Nwi_1821 NC_007406.1 1993835 1994422 R isoprenylcysteine carboxyl methyltransferase complement(1993835..1994422) Nitrobacter winogradskyi Nb-255 3675863 YP_318435.1 CDS Nwi_1822 NC_007406.1 1994438 1995694 R hypothetical protein complement(1994438..1995694) Nitrobacter winogradskyi Nb-255 3675864 YP_318436.1 CDS Nwi_1823 NC_007406.1 1995914 1996588 D hypothetical protein 1995914..1996588 Nitrobacter winogradskyi Nb-255 3675865 YP_318437.1 CDS Nwi_1824 NC_007406.1 1996753 1997727 D PE PGRS family protein 1996753..1997727 Nitrobacter winogradskyi Nb-255 3675866 YP_318438.1 CDS Nwi_1826 NC_007406.1 1999160 1999732 D hypothetical protein 1999160..1999732 Nitrobacter winogradskyi Nb-255 3675868 YP_318439.1 CDS eno NC_007406.1 1999831 2001111 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1999831..2001111) Nitrobacter winogradskyi Nb-255 3675869 YP_318440.1 CDS Nwi_1828 NC_007406.1 2001574 2002050 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2001574..2002050 Nitrobacter winogradskyi Nb-255 3675870 YP_318441.1 CDS Nwi_1829 NC_007406.1 2002083 2002799 R hypothetical protein complement(2002083..2002799) Nitrobacter winogradskyi Nb-255 3675871 YP_318442.1 CDS Nwi_1830 NC_007406.1 2002899 2004095 R major facilitator superfamily transporter complement(2002899..2004095) Nitrobacter winogradskyi Nb-255 3675872 YP_318443.1 CDS Nwi_1831 NC_007406.1 2004092 2004955 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2004092..2004955) Nitrobacter winogradskyi Nb-255 3674756 YP_318444.1 CDS Nwi_1832 NC_007406.1 2005107 2005463 D hypothetical protein 2005107..2005463 Nitrobacter winogradskyi Nb-255 3674757 YP_318445.1 CDS pyrG NC_007406.1 2005468 2007099 R CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2005468..2007099) Nitrobacter winogradskyi Nb-255 3674758 YP_318446.2 CDS secG NC_007406.1 2007266 2007640 R preprotein translocase subunit SecG complement(2007266..2007640) Nitrobacter winogradskyi Nb-255 3674759 YP_318447.1 CDS Nwi_1835 NC_007406.1 2008195 2008947 R triosephosphate isomerase complement(2008195..2008947) Nitrobacter winogradskyi Nb-255 3674760 YP_318448.1 CDS Nwi_1836 NC_007406.1 2009269 2011179 D PpiC-type peptidyl-prolyl cis-trans isomerase 2009269..2011179 Nitrobacter winogradskyi Nb-255 3674761 YP_318449.1 CDS trpD NC_007406.1 2011216 2012229 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2011216..2012229 Nitrobacter winogradskyi Nb-255 3674762 YP_318450.1 CDS trpC NC_007406.1 2012240 2013034 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol phosphate synthase 2012240..2013034 Nitrobacter winogradskyi Nb-255 3674763 YP_318451.1 CDS moaC NC_007406.1 2013188 2013697 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 2013188..2013697 Nitrobacter winogradskyi Nb-255 3674764 YP_318452.1 CDS Nwi_1840 NC_007406.1 2014016 2015230 D molybdopterin biosynthesis protein MoeA 2014016..2015230 Nitrobacter winogradskyi Nb-255 3674765 YP_318453.1 CDS Nwi_1841 NC_007406.1 2015400 2016101 D Represses a number of genes involved in the response to DNA damage; LexA repressor 2015400..2016101 Nitrobacter winogradskyi Nb-255 3674766 YP_318454.1 CDS Nwi_1842 NC_007406.1 2016794 2019130 R ComEC/Rec2-like protein complement(2016794..2019130) Nitrobacter winogradskyi Nb-255 3674767 YP_318455.1 CDS Nwi_1843 NC_007406.1 2019217 2020896 R catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase complement(2019217..2020896) Nitrobacter winogradskyi Nb-255 3674814 YP_318456.1 CDS gltX NC_007406.1 2021064 2022554 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 2021064..2022554 Nitrobacter winogradskyi Nb-255 3674815 YP_318457.1 CDS gltA NC_007406.1 2022697 2023998 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2022697..2023998 Nitrobacter winogradskyi Nb-255 3674816 YP_318458.1 CDS lpxB NC_007406.1 2024022 2025212 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(2024022..2025212) Nitrobacter winogradskyi Nb-255 3674817 YP_318459.1 CDS Nwi_1847 NC_007406.1 2025212 2026078 R hypothetical protein complement(2025212..2026078) Nitrobacter winogradskyi Nb-255 3674818 YP_318460.1 CDS Nwi_1848 NC_007406.1 2026089 2026895 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2026089..2026895) Nitrobacter winogradskyi Nb-255 3674819 YP_318461.1 CDS fabZ NC_007406.1 2026895 2027350 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2026895..2027350) Nitrobacter winogradskyi Nb-255 3674820 YP_318462.1 CDS lpxD NC_007406.1 2027370 2028458 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(2027370..2028458) Nitrobacter winogradskyi Nb-255 3674821 YP_318463.1 CDS Nwi_1851 NC_007406.1 2028491 2031022 R outer membrane protein complement(2028491..2031022) Nitrobacter winogradskyi Nb-255 3674500 YP_318464.1 CDS Nwi_1852 NC_007406.1 2031304 2032455 R peptidase M50 membrane-associated zinc metallopeptidase complement(2031304..2032455) Nitrobacter winogradskyi Nb-255 3674501 YP_318465.1 CDS Nwi_1853 NC_007406.1 2032580 2033803 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2032580..2033803) Nitrobacter winogradskyi Nb-255 3674502 YP_318466.1 CDS Nwi_1854 NC_007406.1 2033807 2034649 R phosphatidate cytidylyltransferase complement(2033807..2034649) Nitrobacter winogradskyi Nb-255 3674503 YP_318467.1 CDS Nwi_1855 NC_007406.1 2034808 2035566 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(2034808..2035566) Nitrobacter winogradskyi Nb-255 3674504 YP_318468.1 CDS frr NC_007406.1 2035585 2036148 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2035585..2036148) Nitrobacter winogradskyi Nb-255 3674505 YP_318469.1 CDS pyrH NC_007406.1 2036200 2036916 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2036200..2036916) Nitrobacter winogradskyi Nb-255 3674506 YP_318470.1 CDS tsf NC_007406.1 2036966 2037889 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2036966..2037889) Nitrobacter winogradskyi Nb-255 3674507 YP_318471.1 CDS rpsB NC_007406.1 2038015 2039013 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2038015..2039013) Nitrobacter winogradskyi Nb-255 3674508 YP_318472.1 CDS dnaE NC_007406.1 2039205 2042711 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(2039205..2042711) Nitrobacter winogradskyi Nb-255 3674509 YP_318473.1 CDS Nwi_1861 NC_007406.1 2043264 2043548 R hypothetical protein complement(2043264..2043548) Nitrobacter winogradskyi Nb-255 3674510 YP_318474.1 CDS Nwi_1862 NC_007406.1 2043612 2044334 R orotidine 5'-phosphate decarboxylase complement(2043612..2044334) Nitrobacter winogradskyi Nb-255 3674511 YP_318475.1 CDS Nwi_1863 NC_007406.1 2044863 2045561 R ABC transporter ATPase complement(2044863..2045561) Nitrobacter winogradskyi Nb-255 3674512 YP_318476.1 CDS Nwi_1864 NC_007406.1 2045570 2046850 R LolC/E family lipoprotein releasing system, transmembrane protein complement(2045570..2046850) Nitrobacter winogradskyi Nb-255 3674513 YP_318477.1 CDS Nwi_1865 NC_007406.1 2046923 2048242 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(2046923..2048242) Nitrobacter winogradskyi Nb-255 3674514 YP_318478.1 CDS Nwi_1866 NC_007406.1 2048647 2049177 R nuclear export factor GLE1 complement(2048647..2049177) Nitrobacter winogradskyi Nb-255 3674515 YP_318479.1 CDS Nwi_1867 NC_007406.1 2049174 2049710 R hypothetical protein complement(2049174..2049710) Nitrobacter winogradskyi Nb-255 3674516 YP_318480.1 CDS Nwi_1868 NC_007406.1 2049739 2051943 R TonB-dependent receptor complement(2049739..2051943) Nitrobacter winogradskyi Nb-255 3674517 YP_318481.1 CDS Nwi_1869 NC_007406.1 2052040 2052405 R hypothetical protein complement(2052040..2052405) Nitrobacter winogradskyi Nb-255 3674518 YP_318482.1 CDS Nwi_1870 NC_007406.1 2052624 2052899 R hypothetical protein complement(2052624..2052899) Nitrobacter winogradskyi Nb-255 3675326 YP_318483.1 CDS Nwi_1871 NC_007406.1 2052899 2053303 R glyoxalase/bleomycin resistance protein/dioxygenase complement(2052899..2053303) Nitrobacter winogradskyi Nb-255 3675327 YP_318484.1 CDS Nwi_1872 NC_007406.1 2053470 2055143 R metallo-beta-lactamase superfamily hydrolase complement(2053470..2055143) Nitrobacter winogradskyi Nb-255 3675328 YP_318485.1 CDS Nwi_1873 NC_007406.1 2055140 2055952 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(2055140..2055952) Nitrobacter winogradskyi Nb-255 3675329 YP_318486.1 CDS Nwi_1874 NC_007406.1 2055966 2057402 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N complement(2055966..2057402) Nitrobacter winogradskyi Nb-255 3675330 YP_318487.1 CDS Nwi_1875 NC_007406.1 2057425 2058933 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M complement(2057425..2058933) Nitrobacter winogradskyi Nb-255 3675331 YP_318488.1 CDS Nwi_1876 NC_007406.1 2058936 2061002 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L complement(2058936..2061002) Nitrobacter winogradskyi Nb-255 3675332 YP_318489.1 CDS Nwi_1877 NC_007406.1 2061086 2061394 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K complement(2061086..2061394) Nitrobacter winogradskyi Nb-255 3675333 YP_318490.1 CDS Nwi_1878 NC_007406.1 2061391 2062029 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J complement(2061391..2062029) Nitrobacter winogradskyi Nb-255 3675334 YP_318491.1 CDS Nwi_1879 NC_007406.1 2062039 2062527 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2062039..2062527) Nitrobacter winogradskyi Nb-255 3675335 YP_318492.1 CDS Nwi_1880 NC_007406.1 2062543 2063613 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(2062543..2063613) Nitrobacter winogradskyi Nb-255 3675336 YP_318493.1 CDS Nwi_1881 NC_007406.1 2063619 2065694 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G complement(2063619..2065694) Nitrobacter winogradskyi Nb-255 3675337 YP_318494.1 CDS Nwi_1882 NC_007406.1 2065699 2067024 R part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F complement(2065699..2067024) Nitrobacter winogradskyi Nb-255 3675338 YP_318495.1 CDS Nwi_1883 NC_007406.1 2067024 2067776 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E complement(2067024..2067776) Nitrobacter winogradskyi Nb-255 3675339 YP_318496.1 CDS Nwi_1884 NC_007406.1 2067791 2068756 R methyltransferase FkbM complement(2067791..2068756) Nitrobacter winogradskyi Nb-255 3675340 YP_318497.1 CDS Nwi_1885 NC_007406.1 2068753 2069961 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(2068753..2069961) Nitrobacter winogradskyi Nb-255 3675341 YP_318498.1 CDS Nwi_1886 NC_007406.1 2069961 2070581 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C complement(2069961..2070581) Nitrobacter winogradskyi Nb-255 3675342 YP_318499.1 CDS Nwi_1887 NC_007406.1 2070593 2071216 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2070593..2071216) Nitrobacter winogradskyi Nb-255 3675343 YP_318500.1 CDS Nwi_1888 NC_007406.1 2071186 2071551 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A complement(2071186..2071551) Nitrobacter winogradskyi Nb-255 3675344 YP_318501.1 CDS Nwi_1889 NC_007406.1 2071741 2072064 D hypothetical protein 2071741..2072064 Nitrobacter winogradskyi Nb-255 3675345 YP_318502.1 CDS Nwi_1890 NC_007406.1 2072674 2072871 R hypothetical protein complement(2072674..2072871) Nitrobacter winogradskyi Nb-255 3675438 YP_318503.1 CDS Nwi_1891 NC_007406.1 2072872 2073111 R hypothetical protein complement(2072872..2073111) Nitrobacter winogradskyi Nb-255 3675439 YP_318504.1 CDS Nwi_1892 NC_007406.1 2073631 2073930 D histone-like DNA-binding protein 2073631..2073930 Nitrobacter winogradskyi Nb-255 3675441 YP_318505.1 CDS Nwi_1893 NC_007406.1 2074083 2075336 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2074083..2075336 Nitrobacter winogradskyi Nb-255 3675442 YP_318506.1 CDS Nwi_1894 NC_007406.1 2075524 2076330 R methyltransferase FkbM complement(2075524..2076330) Nitrobacter winogradskyi Nb-255 3675443 YP_318507.1 CDS Nwi_1895 NC_007406.1 2076388 2076699 D hypothetical protein 2076388..2076699 Nitrobacter winogradskyi Nb-255 3675444 YP_318508.1 CDS Nwi_1896 NC_007406.1 2076751 2077608 R UbiE/COQ5 methyltransferase complement(2076751..2077608) Nitrobacter winogradskyi Nb-255 3675445 YP_318509.1 CDS Nwi_1897 NC_007406.1 2078532 2080958 R peptidase S16, ATP-dependent protease La complement(2078532..2080958) Nitrobacter winogradskyi Nb-255 3675447 YP_318510.1 CDS clpX NC_007406.1 2081266 2082540 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2081266..2082540) Nitrobacter winogradskyi Nb-255 3675448 YP_318511.1 CDS Nwi_1899 NC_007406.1 2082966 2083604 R peptidase S14, ClpP complement(2082966..2083604) Nitrobacter winogradskyi Nb-255 3675449 YP_318512.1 CDS tig NC_007406.1 2084024 2085385 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2084024..2085385) Nitrobacter winogradskyi Nb-255 3675450 YP_318513.1 CDS Nwi_1901 NC_007406.1 2085946 2087223 D multicopper oxidase 2085946..2087223 Nitrobacter winogradskyi Nb-255 3675452 YP_318514.1 CDS Nwi_1902 NC_007406.1 2087241 2088740 R hypothetical protein complement(2087241..2088740) Nitrobacter winogradskyi Nb-255 3675885 YP_318515.1 CDS Nwi_1903 NC_007406.1 2089086 2089424 D nitrogen regulatory protein P-II 2089086..2089424 Nitrobacter winogradskyi Nb-255 3675886 YP_318516.1 CDS Nwi_1904 NC_007406.1 2089515 2090924 D glutamine synthetase type I 2089515..2090924 Nitrobacter winogradskyi Nb-255 3675887 YP_318517.1 CDS Nwi_1905 NC_007406.1 2091076 2092215 D hypothetical protein 2091076..2092215 Nitrobacter winogradskyi Nb-255 3675888 YP_318518.1 CDS Nwi_1906 NC_007406.1 2092212 2092514 R antibiotic biosynthesis monooxygenase complement(2092212..2092514) Nitrobacter winogradskyi Nb-255 3675889 YP_318519.1 CDS Nwi_1907 NC_007406.1 2092830 2093342 R marR family transcriptional regulator complement(2092830..2093342) Nitrobacter winogradskyi Nb-255 3675890 YP_318520.1 CDS Nwi_1908 NC_007406.1 2093752 2094228 R hypothetical protein complement(2093752..2094228) Nitrobacter winogradskyi Nb-255 3675891 YP_318521.1 CDS Nwi_1909 NC_007406.1 2094384 2095442 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2094384..2095442 Nitrobacter winogradskyi Nb-255 3675892 YP_318522.1 CDS Nwi_1910 NC_007406.1 2095589 2096128 D hypothetical protein 2095589..2096128 Nitrobacter winogradskyi Nb-255 3675893 YP_318523.1 CDS Nwi_1911 NC_007406.1 2096210 2096983 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2096210..2096983 Nitrobacter winogradskyi Nb-255 3675894 YP_318524.1 CDS Nwi_1912 NC_007406.1 2097014 2098396 R manganese transport protein MntH complement(2097014..2098396) Nitrobacter winogradskyi Nb-255 3675895 YP_318525.1 CDS Nwi_1913 NC_007406.1 2098570 2098968 R arsenate reductase complement(2098570..2098968) Nitrobacter winogradskyi Nb-255 3675896 YP_318526.1 CDS Nwi_1914 NC_007406.1 2099085 2101334 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(2099085..2101334) Nitrobacter winogradskyi Nb-255 3675897 YP_318527.2 CDS recO NC_007406.1 2101385 2102173 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2101385..2102173) Nitrobacter winogradskyi Nb-255 3675898 YP_318528.1 CDS Nwi_1916 NC_007406.1 2102247 2102618 R hypothetical protein complement(2102247..2102618) Nitrobacter winogradskyi Nb-255 3675899 YP_318529.1 CDS era NC_007406.1 2102633 2103544 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2102633..2103544) Nitrobacter winogradskyi Nb-255 3675900 YP_318530.1 CDS Nwi_1918 NC_007406.1 2103541 2104341 R ribonuclease III complement(2103541..2104341) Nitrobacter winogradskyi Nb-255 3675901 YP_318531.1 CDS Nwi_1919 NC_007406.1 2104338 2105096 R peptidase S26A, signal peptidase I complement(2104338..2105096) Nitrobacter winogradskyi Nb-255 3675902 YP_318532.1 CDS acpS NC_007406.1 2105361 2105780 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2105361..2105780) Nitrobacter winogradskyi Nb-255 3675903 YP_318533.1 CDS Nwi_1921 NC_007406.1 2105777 2106589 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2105777..2106589) Nitrobacter winogradskyi Nb-255 3676776 YP_318534.1 CDS Nwi_1922 NC_007406.1 2106787 2109111 R RelA/SpoT protein complement(2106787..2109111) Nitrobacter winogradskyi Nb-255 3676777 YP_318535.1 CDS Nwi_1923 NC_007406.1 2109512 2109904 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(2109512..2109904) Nitrobacter winogradskyi Nb-255 3676778 YP_318536.1 CDS Nwi_1924 NC_007406.1 2110249 2110866 D hypothetical protein 2110249..2110866 Nitrobacter winogradskyi Nb-255 3676779 YP_318537.1 CDS Nwi_1925 NC_007406.1 2110844 2111521 D uracil-DNA glycosylase 2110844..2111521 Nitrobacter winogradskyi Nb-255 3676780 YP_318538.1 CDS Nwi_1926 NC_007406.1 2111614 2111883 R hypothetical protein complement(2111614..2111883) Nitrobacter winogradskyi Nb-255 3676781 YP_318539.1 CDS smpB NC_007406.1 2111974 2112447 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; ssrA-binding protein complement(2111974..2112447) Nitrobacter winogradskyi Nb-255 3676782 YP_318540.1 CDS mscL NC_007406.1 2112512 2112931 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large conductance mechanosensitive channel protein complement(2112512..2112931) Nitrobacter winogradskyi Nb-255 3676783 YP_318541.1 CDS dapA NC_007406.1 2113111 2114001 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2113111..2114001) Nitrobacter winogradskyi Nb-255 3676784 YP_318542.1 CDS Nwi_1930 NC_007406.1 2114362 2116569 D lytic transglycosylase 2114362..2116569 Nitrobacter winogradskyi Nb-255 3676785 YP_318543.1 CDS Nwi_1931 NC_007406.1 2116944 2117318 D transposase IS3/IS911 2116944..2117318 Nitrobacter winogradskyi Nb-255 3676786 YP_318544.1 CDS Nwi_1932 NC_007406.1 2117315 2118295 D Fis family transcriptional regulator 2117315..2118295 Nitrobacter winogradskyi Nb-255 3676787 YP_318545.1 CDS Nwi_1933 NC_007406.1 2118832 2120400 R porin complement(2118832..2120400) Nitrobacter winogradskyi Nb-255 3676788 YP_318546.1 CDS Nwi_1934 NC_007406.1 2122884 2123414 R transposase, IS4 complement(2122884..2123414) Nitrobacter winogradskyi Nb-255 3676790 YP_318547.1 CDS Nwi_1935 NC_007406.1 2123744 2124034 R hypothetical protein complement(2123744..2124034) Nitrobacter winogradskyi Nb-255 3676791 YP_318548.1 CDS Nwi_1936 NC_007406.1 2124041 2125075 R hypothetical protein complement(2124041..2125075) Nitrobacter winogradskyi Nb-255 3676792 YP_318549.1 CDS Nwi_1937 NC_007406.1 2125072 2125722 R hypothetical protein complement(2125072..2125722) Nitrobacter winogradskyi Nb-255 3676793 YP_318550.1 CDS Nwi_1938 NC_007406.1 2125727 2126677 R CRISPR-associated Csh2 family protein complement(2125727..2126677) Nitrobacter winogradskyi Nb-255 3674782 YP_318551.1 CDS Nwi_1939 NC_007406.1 2126677 2128458 R CRISPR-associated Csd1 family protein complement(2126677..2128458) Nitrobacter winogradskyi Nb-255 3674783 YP_318552.1 CDS Nwi_1940 NC_007406.1 2128455 2129147 R CRISPR-associated Csd1 family protein complement(2128455..2129147) Nitrobacter winogradskyi Nb-255 3674784 YP_318553.1 CDS Nwi_1941 NC_007406.1 2129211 2131445 R CRISPR-associated helicase Cas3 complement(2129211..2131445) Nitrobacter winogradskyi Nb-255 3674785 YP_318554.1 CDS Nwi_1942 NC_007406.1 2131536 2131946 R bacteriophage-like protein complement(2131536..2131946) Nitrobacter winogradskyi Nb-255 3674786 YP_318555.1 CDS Nwi_1943 NC_007406.1 2131949 2133280 R resolvase complement(2131949..2133280) Nitrobacter winogradskyi Nb-255 3674787 YP_318556.1 CDS Nwi_1944 NC_007406.1 2133392 2133766 D transposase IS3/IS911 2133392..2133766 Nitrobacter winogradskyi Nb-255 3674788 YP_318557.1 CDS Nwi_1945 NC_007406.1 2133763 2134743 D Fis family transcriptional regulator 2133763..2134743 Nitrobacter winogradskyi Nb-255 3674789 YP_318558.1 CDS Nwi_1946 NC_007406.1 2134850 2135137 D transmembrane protein 2134850..2135137 Nitrobacter winogradskyi Nb-255 3674790 YP_318559.1 CDS Nwi_1947 NC_007406.1 2135469 2137856 D phosphoketolase 2135469..2137856 Nitrobacter winogradskyi Nb-255 3674791 YP_318560.1 CDS Nwi_1948 NC_007406.1 2137886 2139655 R acetate kinase complement(2137886..2139655) Nitrobacter winogradskyi Nb-255 3674792 YP_318561.1 CDS Nwi_1949 NC_007406.1 2140202 2142199 D heavy metal translocating P-type ATPase 2140202..2142199 Nitrobacter winogradskyi Nb-255 3674769 YP_318562.1 CDS Nwi_1950 NC_007406.1 2142589 2142990 R hypothetical protein complement(2142589..2142990) Nitrobacter winogradskyi Nb-255 3674394 YP_318563.1 CDS Nwi_1951 NC_007406.1 2142987 2144324 R resolvase complement(2142987..2144324) Nitrobacter winogradskyi Nb-255 3676301 YP_318564.1 CDS Nwi_1952 NC_007406.1 2144321 2144830 R hypothetical protein complement(2144321..2144830) Nitrobacter winogradskyi Nb-255 3676302 YP_318565.1 CDS Nwi_1953 NC_007406.1 2145257 2145748 R DNA modification methylase complement(2145257..2145748) Nitrobacter winogradskyi Nb-255 3676303 YP_318566.1 CDS Nwi_1954 NC_007406.1 2145846 2146877 R hypothetical protein complement(2145846..2146877) Nitrobacter winogradskyi Nb-255 3676304 YP_318567.1 CDS Nwi_1955 NC_007406.1 2146890 2148032 R hypothetical protein complement(2146890..2148032) Nitrobacter winogradskyi Nb-255 3676305 YP_318568.1 CDS Nwi_1956 NC_007406.1 2148101 2148619 R hypothetical protein complement(2148101..2148619) Nitrobacter winogradskyi Nb-255 3674677 YP_318569.1 CDS Nwi_1957 NC_007406.1 2148635 2149867 R XRE family transcriptional regulator complement(2148635..2149867) Nitrobacter winogradskyi Nb-255 3676737 YP_318570.1 CDS Nwi_1958 NC_007406.1 2150052 2151239 D hypothetical protein 2150052..2151239 Nitrobacter winogradskyi Nb-255 3674222 YP_318571.1 CDS Nwi_1959 NC_007406.1 2151223 2152161 D hypothetical protein 2151223..2152161 Nitrobacter winogradskyi Nb-255 3674223 YP_318572.1 CDS Nwi_1960 NC_007406.1 2152329 2152538 D hypothetical protein 2152329..2152538 Nitrobacter winogradskyi Nb-255 3674224 YP_318573.1 CDS Nwi_1961 NC_007406.1 2152549 2153037 D hypothetical protein 2152549..2153037 Nitrobacter winogradskyi Nb-255 3674225 YP_318574.1 CDS Nwi_1962 NC_007406.1 2153034 2153330 D hypothetical protein 2153034..2153330 Nitrobacter winogradskyi Nb-255 3674226 YP_318575.1 CDS Nwi_1963 NC_007406.1 2153330 2153968 D hypothetical protein 2153330..2153968 Nitrobacter winogradskyi Nb-255 3674227 YP_318576.1 CDS Nwi_1964 NC_007406.1 2153913 2154893 R Fis family transcriptional regulator complement(2153913..2154893) Nitrobacter winogradskyi Nb-255 3674228 YP_318577.1 CDS Nwi_1965 NC_007406.1 2154890 2155264 R transposase IS3/IS911 complement(2154890..2155264) Nitrobacter winogradskyi Nb-255 3674229 YP_318578.1 CDS Nwi_1966 NC_007406.1 2156085 2156246 D RNA polymerase ECF-type sigma factor, FecI 2156085..2156246 Nitrobacter winogradskyi Nb-255 3674230 YP_318579.1 CDS Nwi_1967 NC_007406.1 2156346 2156696 D transposase 2156346..2156696 Nitrobacter winogradskyi Nb-255 3674231 YP_318580.1 CDS Nwi_1968 NC_007406.1 2156648 2157289 D ISRm2011-2 transposase 2156648..2157289 Nitrobacter winogradskyi Nb-255 3674232 YP_318581.1 CDS Nwi_1969 NC_007406.1 2157520 2158653 D FecR protein 2157520..2158653 Nitrobacter winogradskyi Nb-255 3674233 YP_318582.1 CDS Nwi_1971 NC_007406.1 2159373 2159816 R hypothetical protein complement(2159373..2159816) Nitrobacter winogradskyi Nb-255 3674235 YP_318583.1 CDS Nwi_1972 NC_007406.1 2160367 2160798 D hypothetical protein 2160367..2160798 Nitrobacter winogradskyi Nb-255 3674236 YP_318584.1 CDS Nwi_1973 NC_007406.1 2160930 2161757 R hypothetical protein complement(2160930..2161757) Nitrobacter winogradskyi Nb-255 3674237 YP_318585.1 CDS Nwi_1974 NC_007406.1 2161763 2162395 R hypothetical protein complement(2161763..2162395) Nitrobacter winogradskyi Nb-255 3674238 YP_318586.1 CDS Nwi_1975 NC_007406.1 2162409 2164769 R nitric oxide reductase activation protein complement(2162409..2164769) Nitrobacter winogradskyi Nb-255 3674239 YP_318587.1 CDS Nwi_1976 NC_007406.1 2164862 2165785 R ATPase complement(2164862..2165785) Nitrobacter winogradskyi Nb-255 3674240 YP_318588.1 CDS Nwi_1977 NC_007406.1 2165806 2166033 R hypothetical protein complement(2165806..2166033) Nitrobacter winogradskyi Nb-255 3674241 YP_318589.1 CDS Nwi_1978 NC_007406.1 2166030 2166665 R plasmid segregation oscillating ATPase ParF complement(2166030..2166665) Nitrobacter winogradskyi Nb-255 3674242 YP_318590.1 CDS Nwi_1979 NC_007406.1 2166669 2166935 R hypothetical protein complement(2166669..2166935) Nitrobacter winogradskyi Nb-255 3674243 YP_318591.1 CDS Nwi_1980 NC_007406.1 2167218 2167559 R carboxysome structural peptide CsoS1B complement(2167218..2167559) Nitrobacter winogradskyi Nb-255 3674244 YP_318592.1 CDS Nwi_1981 NC_007406.1 2167601 2167897 R carboxysome structural polypeptide complement(2167601..2167897) Nitrobacter winogradskyi Nb-255 3674245 YP_318593.1 CDS Nwi_1982 NC_007406.1 2167991 2168245 R ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(2167991..2168245) Nitrobacter winogradskyi Nb-255 3674246 YP_318594.1 CDS Nwi_1983 NC_007406.1 2168242 2168499 R ethanolamine utilization protein EutN/carboxysome structural protein Ccml complement(2168242..2168499) Nitrobacter winogradskyi Nb-255 3674247 YP_318595.1 CDS Nwi_1984 NC_007406.1 2168513 2170039 R carboxysome shell polypeptide complement(2168513..2170039) Nitrobacter winogradskyi Nb-255 3674248 YP_318596.1 CDS Nwi_1985 NC_007406.1 2170051 2172753 R carboxysome shell protein complement(2170051..2172753) Nitrobacter winogradskyi Nb-255 3674249 YP_318597.1 CDS Nwi_1986 NC_007406.1 2172859 2173185 R ribulose bisphosphate carboxylase small subunit complement(2172859..2173185) Nitrobacter winogradskyi Nb-255 3674250 YP_318598.1 CDS rbcL NC_007406.1 2173260 2174681 R type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase complement(2173260..2174681) Nitrobacter winogradskyi Nb-255 3674251 YP_318599.1 CDS Nwi_1988 NC_007406.1 2174913 2175848 D LysR family transcriptional regulator 2174913..2175848 Nitrobacter winogradskyi Nb-255 3674252 YP_318600.1 CDS Nwi_1989 NC_007406.1 2175838 2176164 R hypothetical protein complement(2175838..2176164) Nitrobacter winogradskyi Nb-255 3674253 YP_318601.1 CDS Nwi_1990 NC_007406.1 2176161 2179274 R hypothetical protein complement(2176161..2179274) Nitrobacter winogradskyi Nb-255 3674254 YP_318602.1 CDS Nwi_1991 NC_007406.1 2179259 2180017 R hypothetical protein complement(2179259..2180017) Nitrobacter winogradskyi Nb-255 3674255 YP_318603.1 CDS Nwi_1992 NC_007406.1 2180023 2181723 R NADH/ubiquinone/plastoquinone (complex I) complement(2180023..2181723) Nitrobacter winogradskyi Nb-255 3674256 YP_318604.1 CDS Nwi_1993 NC_007406.1 2181935 2182228 D hypothetical protein 2181935..2182228 Nitrobacter winogradskyi Nb-255 3674257 YP_318605.1 CDS Nwi_1994 NC_007406.1 2182328 2182603 D hypothetical protein 2182328..2182603 Nitrobacter winogradskyi Nb-255 3674258 YP_318606.1 CDS Nwi_1995 NC_007406.1 2182829 2183095 R hypothetical protein complement(2182829..2183095) Nitrobacter winogradskyi Nb-255 3674259 YP_318607.1 CDS Nwi_1996 NC_007406.1 2184036 2184239 R hypothetical protein complement(2184036..2184239) Nitrobacter winogradskyi Nb-255 3674260 YP_318608.1 CDS gatB NC_007406.1 2184822 2186306 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2184822..2186306) Nitrobacter winogradskyi Nb-255 3674185 YP_318609.1 CDS Nwi_1998 NC_007406.1 2186375 2187754 R patatin complement(2186375..2187754) Nitrobacter winogradskyi Nb-255 3674186 YP_318610.1 CDS Nwi_1999 NC_007406.1 2187953 2188669 R ISRm2011-2 transposase complement(2187953..2188669) Nitrobacter winogradskyi Nb-255 3674187 YP_318611.1 CDS Nwi_2000 NC_007406.1 2189084 2189386 R hypothetical protein complement(2189084..2189386) Nitrobacter winogradskyi Nb-255 3674188 YP_318612.1 CDS gatA NC_007406.1 2189383 2190858 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(2189383..2190858) Nitrobacter winogradskyi Nb-255 3674189 YP_318613.1 CDS Nwi_2002 NC_007406.1 2190855 2191061 R hypothetical protein complement(2190855..2191061) Nitrobacter winogradskyi Nb-255 3674190 YP_318614.1 CDS gatC NC_007406.1 2191076 2191363 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(2191076..2191363) Nitrobacter winogradskyi Nb-255 3674191 YP_318615.1 CDS Nwi_2004 NC_007406.1 2191626 2192117 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; holliday junction resolvase-like protein 2191626..2192117 Nitrobacter winogradskyi Nb-255 3674192 YP_318616.1 CDS Nwi_2005 NC_007406.1 2192118 2192906 R abortive infection protein complement(2192118..2192906) Nitrobacter winogradskyi Nb-255 3674193 YP_318617.1 CDS Nwi_2006 NC_007406.1 2193042 2194682 R acyl-CoA dehydrogenase complement(2193042..2194682) Nitrobacter winogradskyi Nb-255 3674194 YP_318618.1 CDS pyrB NC_007406.1 2194720 2195808 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 2194720..2195808 Nitrobacter winogradskyi Nb-255 3674195 YP_318619.1 CDS Nwi_2008 NC_007406.1 2195887 2197188 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 2195887..2197188 Nitrobacter winogradskyi Nb-255 3674196 YP_318620.1 CDS Nwi_2009 NC_007406.1 2197441 2198031 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; glycerol-3-phosphate acyltransferase PlsY 2197441..2198031 Nitrobacter winogradskyi Nb-255 3674197 YP_318621.1 CDS Nwi_2010 NC_007406.1 2198062 2199180 D SMF protein 2198062..2199180 Nitrobacter winogradskyi Nb-255 3674198 YP_318622.1 CDS Nwi_2011 NC_007406.1 2199310 2200587 R hypothetical protein complement(2199310..2200587) Nitrobacter winogradskyi Nb-255 3674199 YP_318623.1 CDS Nwi_2012 NC_007406.1 2200927 2202171 D cyclopropane-fatty-acyl-phospholipid synthase 2200927..2202171 Nitrobacter winogradskyi Nb-255 3674200 YP_318624.1 CDS Nwi_2013 NC_007406.1 2202451 2203941 D unwinds double stranded DNA; replicative DNA helicase 2202451..2203941 Nitrobacter winogradskyi Nb-255 3674201 YP_318625.1 CDS Nwi_2014 NC_007406.1 2204009 2205196 D alanine racemase 2204009..2205196 Nitrobacter winogradskyi Nb-255 3674202 YP_318626.1 CDS Nwi_2015 NC_007406.1 2205207 2206667 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 2205207..2206667 Nitrobacter winogradskyi Nb-255 3674203 YP_318627.1 CDS Nwi_2016 NC_007406.1 2206872 2207504 D colicin V production protein 2206872..2207504 Nitrobacter winogradskyi Nb-255 3677086 YP_318628.1 CDS Nwi_2017 NC_007406.1 2207564 2209078 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2207564..2209078 Nitrobacter winogradskyi Nb-255 3677087 YP_318629.1 CDS Nwi_2018 NC_007406.1 2209107 2209640 R N-acetyltransferase complement(2209107..2209640) Nitrobacter winogradskyi Nb-255 3677088 YP_318630.1 CDS Nwi_2019 NC_007406.1 2209690 2210442 D short-chain dehydrogenase/reductase SDR 2209690..2210442 Nitrobacter winogradskyi Nb-255 3677089 YP_318631.1 CDS engA NC_007406.1 2210944 2212311 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2210944..2212311) Nitrobacter winogradskyi Nb-255 3677090 YP_318632.1 CDS Nwi_2021 NC_007406.1 2212425 2212943 R hypothetical protein complement(2212425..2212943) Nitrobacter winogradskyi Nb-255 3677091 YP_318633.1 CDS Nwi_2022 NC_007406.1 2212983 2213636 R hypothetical protein complement(2212983..2213636) Nitrobacter winogradskyi Nb-255 3677092 YP_318634.1 CDS Nwi_2023 NC_007406.1 2214009 2215817 R hypothetical protein complement(2214009..2215817) Nitrobacter winogradskyi Nb-255 3677093 YP_318635.1 CDS panB NC_007406.1 2216093 2216917 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2216093..2216917) Nitrobacter winogradskyi Nb-255 3677094 YP_318636.1 CDS Nwi_2025 NC_007406.1 2216919 2217488 R protein NnrU complement(2216919..2217488) Nitrobacter winogradskyi Nb-255 3677095 YP_318637.1 CDS Nwi_2026 NC_007406.1 2217673 2217993 D hypothetical protein 2217673..2217993 Nitrobacter winogradskyi Nb-255 3677096 YP_318638.1 CDS Nwi_2027 NC_007406.1 2218049 2219668 R peptide chain release factor 3 complement(2218049..2219668) Nitrobacter winogradskyi Nb-255 3677097 YP_318639.1 CDS Nwi_2028 NC_007406.1 2219834 2220034 D small multidrug resistance protein SugE 2219834..2220034 Nitrobacter winogradskyi Nb-255 3677098 YP_318640.1 CDS Nwi_2029 NC_007406.1 2220009 2220650 R ISRm2011-2 transposase complement(2220009..2220650) Nitrobacter winogradskyi Nb-255 3677099 YP_318641.1 CDS Nwi_2030 NC_007406.1 2220602 2220952 R transposase complement(2220602..2220952) Nitrobacter winogradskyi Nb-255 3677100 YP_318642.1 CDS Nwi_2031 NC_007406.1 2221208 2222212 R phosphate transporter complement(2221208..2222212) Nitrobacter winogradskyi Nb-255 3677101 YP_318643.1 CDS Nwi_2032 NC_007406.1 2222227 2222874 R hypothetical protein complement(2222227..2222874) Nitrobacter winogradskyi Nb-255 3677102 YP_318644.1 CDS Nwi_2033 NC_007406.1 2223072 2223437 R hypothetical protein complement(2223072..2223437) Nitrobacter winogradskyi Nb-255 3677103 YP_318645.1 CDS Nwi_2034 NC_007406.1 2223472 2223936 D hypothetical protein 2223472..2223936 Nitrobacter winogradskyi Nb-255 3677104 YP_318646.1 CDS thrS NC_007406.1 2224074 2226134 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2224074..2226134 Nitrobacter winogradskyi Nb-255 3677105 YP_318647.1 CDS Nwi_2036 NC_007406.1 2226414 2226977 D nitroreductase 2226414..2226977 Nitrobacter winogradskyi Nb-255 3675815 YP_318648.1 CDS Nwi_2037 NC_007406.1 2227075 2227545 R hypothetical protein complement(2227075..2227545) Nitrobacter winogradskyi Nb-255 3675816 YP_318649.1 CDS Nwi_2038 NC_007406.1 2227696 2228499 R TonB-like protein complement(2227696..2228499) Nitrobacter winogradskyi Nb-255 3675817 YP_318650.1 CDS Nwi_2039 NC_007406.1 2228496 2228966 R biopolymer transport protein ExbD/TolR complement(2228496..2228966) Nitrobacter winogradskyi Nb-255 3675818 YP_318651.1 CDS Nwi_2040 NC_007406.1 2228973 2230238 R MotA/TolQ/ExbB proton channel complement(2228973..2230238) Nitrobacter winogradskyi Nb-255 3675819 YP_318652.1 CDS Nwi_2041 NC_007406.1 2230308 2232245 R ABC transporter ATPase complement(2230308..2232245) Nitrobacter winogradskyi Nb-255 3675820 YP_318653.1 CDS Nwi_2042 NC_007406.1 2232242 2233486 R secretion protein HlyD complement(2232242..2233486) Nitrobacter winogradskyi Nb-255 3675821 YP_318654.1 CDS Nwi_2043 NC_007406.1 2233491 2233817 R hypothetical protein complement(2233491..2233817) Nitrobacter winogradskyi Nb-255 3675822 YP_318655.1 CDS Nwi_2044 NC_007406.1 2233814 2234344 R hypothetical protein complement(2233814..2234344) Nitrobacter winogradskyi Nb-255 3675823 YP_318656.1 CDS Nwi_2046 NC_007406.1 2234669 2235043 D transposase IS3/IS911 2234669..2235043 Nitrobacter winogradskyi Nb-255 3675825 YP_318657.1 CDS Nwi_2047 NC_007406.1 2235040 2236020 D Fis family transcriptional regulator 2235040..2236020 Nitrobacter winogradskyi Nb-255 3675826 YP_318658.1 CDS Nwi_2048 NC_007406.1 2235965 2236459 R fec I like protein complement(2235965..2236459) Nitrobacter winogradskyi Nb-255 3675827 YP_318659.1 CDS Nwi_2049 NC_007406.1 2236618 2239119 R TonB-dependent siderophore receptor complement(2236618..2239119) Nitrobacter winogradskyi Nb-255 3675828 YP_318660.1 CDS Nwi_2050 NC_007406.1 2239519 2240508 R FecR, iron siderophore sensor protein complement(2239519..2240508) Nitrobacter winogradskyi Nb-255 3675829 YP_318661.1 CDS Nwi_2051 NC_007406.1 2240573 2241103 R fec I like protein complement(2240573..2241103) Nitrobacter winogradskyi Nb-255 3675830 YP_318662.1 CDS Nwi_2052 NC_007406.1 2241358 2241843 R hypothetical protein complement(2241358..2241843) Nitrobacter winogradskyi Nb-255 3675831 YP_318663.1 CDS Nwi_2053 NC_007406.1 2241933 2242703 R TonB-like protein complement(2241933..2242703) Nitrobacter winogradskyi Nb-255 3675832 YP_318664.1 CDS Nwi_2054 NC_007406.1 2243522 2243935 R hypothetical protein complement(2243522..2243935) Nitrobacter winogradskyi Nb-255 3675833 YP_318665.1 CDS Nwi_2055 NC_007406.1 2244551 2245201 R hypothetical protein complement(2244551..2245201) Nitrobacter winogradskyi Nb-255 3676716 YP_318666.1 CDS Nwi_2056 NC_007406.1 2245427 2246101 R hypothetical protein complement(2245427..2246101) Nitrobacter winogradskyi Nb-255 3676717 YP_318667.1 CDS Nwi_2057 NC_007406.1 2246844 2247122 D hypothetical protein 2246844..2247122 Nitrobacter winogradskyi Nb-255 3676719 YP_318668.1 CDS Nwi_2058 NC_007406.1 2247186 2247518 D hypothetical protein 2247186..2247518 Nitrobacter winogradskyi Nb-255 3676720 YP_318669.1 CDS Nwi_2059 NC_007406.1 2247625 2247975 D transposase 2247625..2247975 Nitrobacter winogradskyi Nb-255 3676721 YP_318670.1 CDS Nwi_2060 NC_007406.1 2247927 2248568 D ISRm2011-2 transposase 2247927..2248568 Nitrobacter winogradskyi Nb-255 3676722 YP_318671.1 CDS Nwi_2061 NC_007406.1 2249925 2250650 D Crp/Fnr family transcriptional regulator 2249925..2250650 Nitrobacter winogradskyi Nb-255 3676723 YP_318672.1 CDS Nwi_2062 NC_007406.1 2251111 2251962 D RNA methyltransferase TrmH, group 3 2251111..2251962 Nitrobacter winogradskyi Nb-255 3676724 YP_318673.1 CDS Nwi_2063 NC_007406.1 2252021 2252581 R hypothetical protein complement(2252021..2252581) Nitrobacter winogradskyi Nb-255 3676725 YP_318674.1 CDS Nwi_2064 NC_007406.1 2252625 2253071 R hypothetical protein complement(2252625..2253071) Nitrobacter winogradskyi Nb-255 3676726 YP_318675.1 CDS Nwi_2065 NC_007406.1 2254215 2255954 R sulfate transporter/antisigma-factor antagonist STAS complement(2254215..2255954) Nitrobacter winogradskyi Nb-255 3676728 YP_318676.1 CDS Nwi_2066 NC_007406.1 2256324 2256776 R hypothetical protein complement(2256324..2256776) Nitrobacter winogradskyi Nb-255 3676729 YP_318677.1 CDS Nwi_2067 NC_007406.1 2256915 2258285 D L-sorbosone dehydrogenase (SNDH) 2256915..2258285 Nitrobacter winogradskyi Nb-255 3675482 YP_318678.1 CDS Nwi_2068 NC_007406.1 2258767 2262411 R nitrate reductase subunit alpha complement(2258767..2262411) Nitrobacter winogradskyi Nb-255 3675483 YP_318679.1 CDS Nwi_2069 NC_007406.1 2263467 2266580 D hypothetical protein 2263467..2266580 Nitrobacter winogradskyi Nb-255 3675484 YP_318680.1 CDS Nwi_2070 NC_007406.1 2266953 2267210 D hypothetical protein 2266953..2267210 Nitrobacter winogradskyi Nb-255 3675485 YP_318681.1 CDS Nwi_2071 NC_007406.1 2267916 2268998 D luciferase-like protein 2267916..2268998 Nitrobacter winogradskyi Nb-255 3675486 YP_318682.1 CDS Nwi_2072 NC_007406.1 2269061 2271421 R TonB-dependent receptor complement(2269061..2271421) Nitrobacter winogradskyi Nb-255 3675487 YP_318683.1 CDS Nwi_2073 NC_007406.1 2271751 2272782 D periplasmic binding protein 2271751..2272782 Nitrobacter winogradskyi Nb-255 3675488 YP_318684.1 CDS Nwi_2074 NC_007406.1 2272789 2273619 R ABC transporter ATPase complement(2272789..2273619) Nitrobacter winogradskyi Nb-255 3675489 YP_318685.1 CDS Nwi_2075 NC_007406.1 2273616 2274617 R Fe3+-siderophore ABC transporter permease complement(2273616..2274617) Nitrobacter winogradskyi Nb-255 3675490 YP_318686.1 CDS Nwi_2076 NC_007406.1 2275009 2276610 R TonB-dependent receptor complement(2275009..2276610) Nitrobacter winogradskyi Nb-255 3675491 YP_318687.1 CDS Nwi_2077 NC_007406.1 2276719 2277789 D IstB-like ATP-binding protein 2276719..2277789 Nitrobacter winogradskyi Nb-255 3675492 YP_318688.1 CDS Nwi_2078 NC_007406.1 2278420 2278800 D XRE family transcriptional regulator 2278420..2278800 Nitrobacter winogradskyi Nb-255 3675493 YP_318689.1 CDS Nwi_2079 NC_007406.1 2278800 2280032 D hypothetical protein 2278800..2280032 Nitrobacter winogradskyi Nb-255 3675494 YP_318690.1 CDS Nwi_2081 NC_007406.1 2280841 2281215 D transposase IS3/IS911 2280841..2281215 Nitrobacter winogradskyi Nb-255 3677242 YP_318691.1 CDS Nwi_2082 NC_007406.1 2281212 2282192 D Fis family transcriptional regulator 2281212..2282192 Nitrobacter winogradskyi Nb-255 3677243 YP_318692.1 CDS Nwi_2083 NC_007406.1 2282434 2282958 D hypothetical protein 2282434..2282958 Nitrobacter winogradskyi Nb-255 3677244 YP_318693.1 CDS Nwi_2084 NC_007406.1 2283062 2283469 D hypothetical protein 2283062..2283469 Nitrobacter winogradskyi Nb-255 3677245 YP_318694.1 CDS Nwi_2085 NC_007406.1 2283584 2284480 D hypothetical protein 2283584..2284480 Nitrobacter winogradskyi Nb-255 3677246 YP_318695.1 CDS Nwi_2086 NC_007406.1 2284473 2284727 D hypothetical protein 2284473..2284727 Nitrobacter winogradskyi Nb-255 3677247 YP_318696.1 CDS Nwi_2087 NC_007406.1 2284729 2285298 D hypothetical protein 2284729..2285298 Nitrobacter winogradskyi Nb-255 3674644 YP_318697.1 CDS Nwi_2088 NC_007406.1 2285291 2287834 R hypothetical protein complement(2285291..2287834) Nitrobacter winogradskyi Nb-255 3674645 YP_318698.1 CDS Nwi_2089 NC_007406.1 2287887 2288897 R ATPase AAA complement(2287887..2288897) Nitrobacter winogradskyi Nb-255 3674646 YP_318699.1 CDS Nwi_2090 NC_007406.1 2289103 2289339 R hypothetical protein complement(2289103..2289339) Nitrobacter winogradskyi Nb-255 3674647 YP_318700.1 CDS Nwi_2091 NC_007406.1 2289336 2290544 R conjugation TrbI-like protein complement(2289336..2290544) Nitrobacter winogradskyi Nb-255 3674648 YP_318701.1 CDS Nwi_2092 NC_007406.1 2290544 2291563 R conjugal transfer protein TrbG/VirB9/CagX complement(2290544..2291563) Nitrobacter winogradskyi Nb-255 3674649 YP_318702.1 CDS Nwi_2093 NC_007406.1 2291563 2292249 R conjugal transfer protein TrbF complement(2291563..2292249) Nitrobacter winogradskyi Nb-255 3674650 YP_318703.1 CDS Nwi_2094 NC_007406.1 2292318 2293562 R type IV secretion VirB6 family; conjugal transfer protein TrbL complement(2292318..2293562) Nitrobacter winogradskyi Nb-255 3674651 YP_318704.1 CDS Nwi_2095 NC_007406.1 2293559 2293825 R hypothetical protein complement(2293559..2293825) Nitrobacter winogradskyi Nb-255 3674652 YP_318705.1 CDS Nwi_2096 NC_007406.1 2293836 2294585 R conjugal transfer protein TrbJ complement(2293836..2294585) Nitrobacter winogradskyi Nb-255 3674653 YP_318706.1 CDS Nwi_2097 NC_007406.1 2294582 2295052 R type IV secretion system protein VirB4 complement(2294582..2295052) Nitrobacter winogradskyi Nb-255 3674654 YP_318707.1 CDS Nwi_2098 NC_007406.1 2295082 2296287 R conjugal transfer protein trbE complement(2295082..2296287) Nitrobacter winogradskyi Nb-255 3674655 YP_318708.1 CDS Nwi_2099 NC_007406.1 2296440 2297420 R Fis family transcriptional regulator complement(2296440..2297420) Nitrobacter winogradskyi Nb-255 3674656 YP_318709.1 CDS Nwi_2100 NC_007406.1 2297417 2297791 R transposase IS3/IS911 complement(2297417..2297791) Nitrobacter winogradskyi Nb-255 3674657 YP_318710.1 CDS Nwi_2103 NC_007406.1 2300514 2300864 D transposase 2300514..2300864 Nitrobacter winogradskyi Nb-255 3674660 YP_318711.1 CDS Nwi_2104 NC_007406.1 2300816 2301457 D ISRm2011-2 transposase 2300816..2301457 Nitrobacter winogradskyi Nb-255 3674661 YP_318712.1 CDS Nwi_2105 NC_007406.1 2301607 2302056 R integrase complement(2301607..2302056) Nitrobacter winogradskyi Nb-255 3674662 YP_318713.1 CDS Nwi_2106 NC_007406.1 2302049 2302867 R integrase complement(2302049..2302867) Nitrobacter winogradskyi Nb-255 3675453 YP_318714.1 CDS Nwi_2107 NC_007406.1 2302978 2303328 D transposase 2302978..2303328 Nitrobacter winogradskyi Nb-255 3675454 YP_318715.1 CDS Nwi_2108 NC_007406.1 2303280 2303963 D transposase for insertion sequence element ISRM11/ISRM2011-2 2303280..2303963 Nitrobacter winogradskyi Nb-255 3675455 YP_318716.1 CDS Nwi_2109 NC_007406.1 2304572 2305747 D Fic family protein 2304572..2305747 Nitrobacter winogradskyi Nb-255 3675456 YP_318717.1 CDS Nwi_2110 NC_007406.1 2305885 2306217 D hypothetical protein 2305885..2306217 Nitrobacter winogradskyi Nb-255 3675457 YP_318718.1 CDS Nwi_2111 NC_007406.1 2306249 2308474 R amylo-alpha-1,6-glucosidase complement(2306249..2308474) Nitrobacter winogradskyi Nb-255 3675458 YP_318719.1 CDS Nwi_2112 NC_007406.1 2308486 2309583 R group 1 glycosyl transferase complement(2308486..2309583) Nitrobacter winogradskyi Nb-255 3675459 YP_318720.1 CDS groEL NC_007406.1 2309728 2311356 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia and high GC gram-positive bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the R. leguminosarum protein in this cluster is transcribed under anaerobic conditions and is not necessary for growth; molecular chaperone GroEL complement(2309728..2311356) Nitrobacter winogradskyi Nb-255 3675460 YP_318721.1 CDS groES NC_007406.1 2311406 2311720 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2311406..2311720) Nitrobacter winogradskyi Nb-255 3675461 YP_318722.1 CDS Nwi_2115 NC_007406.1 2312054 2312398 D hypothetical protein 2312054..2312398 Nitrobacter winogradskyi Nb-255 3675462 YP_318723.1 CDS Nwi_2116 NC_007406.1 2312433 2312594 D hypothetical protein 2312433..2312594 Nitrobacter winogradskyi Nb-255 3675463 YP_318724.1 CDS Nwi_2117 NC_007406.1 2313173 2313637 D heat shock protein Hsp20 2313173..2313637 Nitrobacter winogradskyi Nb-255 3675464 YP_318725.1 CDS Nwi_2118 NC_007406.1 2313720 2314220 D heat shock protein Hsp20 2313720..2314220 Nitrobacter winogradskyi Nb-255 3675465 YP_318726.1 CDS Nwi_2119 NC_007406.1 2314320 2314649 D transposase IS3/IS911 2314320..2314649 Nitrobacter winogradskyi Nb-255 3675466 YP_318727.1 CDS Nwi_2120 NC_007406.1 2314646 2315551 D integrase catalytic subunit 2314646..2315551 Nitrobacter winogradskyi Nb-255 3675467 YP_318728.1 CDS Nwi_2121 NC_007406.1 2315712 2316665 D antirestriction protein; ArdC 2315712..2316665 Nitrobacter winogradskyi Nb-255 3675468 YP_318729.1 CDS Nwi_2122 NC_007406.1 2316662 2317033 D hypothetical protein 2316662..2317033 Nitrobacter winogradskyi Nb-255 3675469 YP_318730.1 CDS Nwi_2123 NC_007406.1 2317208 2319361 D hypothetical protein 2317208..2319361 Nitrobacter winogradskyi Nb-255 3675470 YP_318731.1 CDS Nwi_2124 NC_007406.1 2319422 2319643 D hypothetical protein 2319422..2319643 Nitrobacter winogradskyi Nb-255 3675471 YP_318732.1 CDS Nwi_2125 NC_007406.1 2319714 2320424 D hypothetical protein 2319714..2320424 Nitrobacter winogradskyi Nb-255 3675472 YP_318733.1 CDS Nwi_2126 NC_007406.1 2320464 2321063 D hypothetical protein 2320464..2321063 Nitrobacter winogradskyi Nb-255 3677067 YP_318734.1 CDS Nwi_2127 NC_007406.1 2321060 2321302 D hypothetical protein 2321060..2321302 Nitrobacter winogradskyi Nb-255 3677068 YP_318735.1 CDS Nwi_2128 NC_007406.1 2321440 2325780 D methylase/helicase 2321440..2325780 Nitrobacter winogradskyi Nb-255 3677069 YP_318736.1 CDS Nwi_2129 NC_007406.1 2325780 2326841 D hypothetical protein 2325780..2326841 Nitrobacter winogradskyi Nb-255 3677070 YP_318737.1 CDS Nwi_2130 NC_007406.1 2327176 2328099 D hypothetical protein 2327176..2328099 Nitrobacter winogradskyi Nb-255 3677071 YP_318738.1 CDS Nwi_2131 NC_007406.1 2328371 2331670 D DEAD/DEAH box helicase 2328371..2331670 Nitrobacter winogradskyi Nb-255 3677072 YP_318739.1 CDS Nwi_2132 NC_007406.1 2331839 2332348 D hypothetical protein 2331839..2332348 Nitrobacter winogradskyi Nb-255 3677073 YP_318740.1 CDS Nwi_2133 NC_007406.1 2332561 2332884 R hypothetical protein complement(2332561..2332884) Nitrobacter winogradskyi Nb-255 3677074 YP_318741.1 CDS Nwi_2134 NC_007406.1 2332922 2333245 D hypothetical protein 2332922..2333245 Nitrobacter winogradskyi Nb-255 3677075 YP_318742.1 CDS Nwi_2135 NC_007406.1 2333525 2334505 R Fis family transcriptional regulator complement(2333525..2334505) Nitrobacter winogradskyi Nb-255 3677076 YP_318743.1 CDS Nwi_2136 NC_007406.1 2334502 2334876 R transposase IS3/IS911 complement(2334502..2334876) Nitrobacter winogradskyi Nb-255 3677077 YP_318744.1 CDS Nwi_2138 NC_007406.1 2335204 2336091 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigJ complement(2335204..2336091) Nitrobacter winogradskyi Nb-255 3677079 YP_318745.1 CDS Nwi_2139 NC_007406.1 2336084 2336419 R antibiotic biosynthesis monooxygenase complement(2336084..2336419) Nitrobacter winogradskyi Nb-255 3677080 YP_318746.1 CDS Nwi_2140 NC_007406.1 2336775 2337008 R LysR family transcriptional regulator complement(2336775..2337008) Nitrobacter winogradskyi Nb-255 3677081 YP_318747.1 CDS Nwi_2141 NC_007406.1 2337465 2337761 D prophage CP4-57 regulator 2337465..2337761 Nitrobacter winogradskyi Nb-255 3677082 YP_318748.1 CDS Nwi_2142 NC_007406.1 2337715 2338971 R phage integrase complement(2337715..2338971) Nitrobacter winogradskyi Nb-255 3677083 YP_318749.1 CDS guaA NC_007406.1 2339269 2340876 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(2339269..2340876) Nitrobacter winogradskyi Nb-255 3677084 YP_318750.1 CDS Nwi_2144 NC_007406.1 2341024 2342322 R tRNA and rRNA cytosine-C5-methylase complement(2341024..2342322) Nitrobacter winogradskyi Nb-255 3677085 YP_318751.1 CDS Nwi_2145 NC_007406.1 2342432 2343088 R hypothetical protein complement(2342432..2343088) Nitrobacter winogradskyi Nb-255 3674563 YP_318752.1 CDS Nwi_2146 NC_007406.1 2343193 2344689 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(2343193..2344689) Nitrobacter winogradskyi Nb-255 3674564 YP_318753.1 CDS Nwi_2147 NC_007406.1 2344996 2345244 R hypothetical protein complement(2344996..2345244) Nitrobacter winogradskyi Nb-255 3674565 YP_318754.1 CDS Nwi_2148 NC_007406.1 2345363 2346835 D EmrB/QacA family drug resistance transporter 2345363..2346835 Nitrobacter winogradskyi Nb-255 3674566 YP_318755.1 CDS Nwi_2149 NC_007406.1 2346868 2347539 D hypothetical protein 2346868..2347539 Nitrobacter winogradskyi Nb-255 3674567 YP_318756.1 CDS Nwi_2150 NC_007406.1 2347545 2348237 R ribosomal RNA methyltransferase RrmJ/FtsJ complement(2347545..2348237) Nitrobacter winogradskyi Nb-255 3674568 YP_318757.1 CDS Nwi_2151 NC_007406.1 2348403 2349470 R ppx/GppA phosphatase complement(2348403..2349470) Nitrobacter winogradskyi Nb-255 3674569 YP_318758.1 CDS Nwi_2152 NC_007406.1 2349865 2350338 D hypothetical protein 2349865..2350338 Nitrobacter winogradskyi Nb-255 3674570 YP_318759.1 CDS Nwi_2153 NC_007406.1 2350344 2352152 D ABC transporter ATPase 2350344..2352152 Nitrobacter winogradskyi Nb-255 3674571 YP_318760.1 CDS Nwi_2154 NC_007406.1 2352157 2353383 R hypothetical protein complement(2352157..2353383) Nitrobacter winogradskyi Nb-255 3674572 YP_318761.1 CDS Nwi_2155 NC_007406.1 2353405 2353881 R acyl dehydratase MaoC complement(2353405..2353881) Nitrobacter winogradskyi Nb-255 3674573 YP_318762.1 CDS Nwi_2156 NC_007406.1 2353950 2354849 R 3-hydroxyisobutyrate dehydrogenase complement(2353950..2354849) Nitrobacter winogradskyi Nb-255 3674574 YP_318763.1 CDS Nwi_2157 NC_007406.1 2354988 2356061 R catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA; 3-hydroxyisobutyryl-CoA hydrolase complement(2354988..2356061) Nitrobacter winogradskyi Nb-255 3674575 YP_318764.1 CDS Nwi_2158 NC_007406.1 2356058 2357203 R acyl-CoA dehydrogenase complement(2356058..2357203) Nitrobacter winogradskyi Nb-255 3674576 YP_318765.1 CDS Nwi_2159 NC_007406.1 2357220 2358752 R methylmalonate-semialdehyde dehydrogenase complement(2357220..2358752) Nitrobacter winogradskyi Nb-255 3674577 YP_318766.1 CDS Nwi_2160 NC_007406.1 2358808 2359977 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2358808..2359977) Nitrobacter winogradskyi Nb-255 3674578 YP_318767.1 CDS Nwi_2161 NC_007406.1 2360266 2360856 R nuclear protein SET complement(2360266..2360856) Nitrobacter winogradskyi Nb-255 3674579 YP_318768.1 CDS Nwi_2162 NC_007406.1 2361040 2362008 D hypothetical protein 2361040..2362008 Nitrobacter winogradskyi Nb-255 3674580 YP_318769.1 CDS Nwi_2163 NC_007406.1 2362144 2362614 D hypothetical protein 2362144..2362614 Nitrobacter winogradskyi Nb-255 3674581 YP_318770.1 CDS Nwi_2164 NC_007406.1 2362711 2363070 D glutathione-dependent formaldehyde-activating protein 2362711..2363070 Nitrobacter winogradskyi Nb-255 3674582 YP_318771.1 CDS Nwi_2165 NC_007406.1 2363329 2364267 R hypothetical protein complement(2363329..2364267) Nitrobacter winogradskyi Nb-255 3677248 YP_318772.1 CDS Nwi_2166 NC_007406.1 2364396 2364791 R hypothetical protein complement(2364396..2364791) Nitrobacter winogradskyi Nb-255 3677249 YP_318773.1 CDS Nwi_2167 NC_007406.1 2364911 2366218 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2364911..2366218 Nitrobacter winogradskyi Nb-255 3677250 YP_318774.1 CDS Nwi_2168 NC_007406.1 2366359 2367003 D hypothetical protein 2366359..2367003 Nitrobacter winogradskyi Nb-255 3677251 YP_318775.1 CDS Nwi_2169 NC_007406.1 2367111 2368538 D phosphate-selective porin O and P 2367111..2368538 Nitrobacter winogradskyi Nb-255 3677252 YP_318776.1 CDS Nwi_2170 NC_007406.1 2369035 2369655 D transglutaminase 2369035..2369655 Nitrobacter winogradskyi Nb-255 3677253 YP_318777.1 CDS Nwi_2171 NC_007406.1 2370063 2370527 R peptidylprolyl isomerase, FKBP-type complement(2370063..2370527) Nitrobacter winogradskyi Nb-255 3677254 YP_318778.1 CDS Nwi_2172 NC_007406.1 2370627 2371157 R carbonic anhydrase complement(2370627..2371157) Nitrobacter winogradskyi Nb-255 3677255 YP_318779.1 CDS Nwi_2173 NC_007406.1 2371213 2371542 R hypothetical protein complement(2371213..2371542) Nitrobacter winogradskyi Nb-255 3677256 YP_318780.1 CDS Nwi_2174 NC_007406.1 2371745 2372461 D hypothetical protein 2371745..2372461 Nitrobacter winogradskyi Nb-255 3677257 YP_318781.1 CDS Nwi_2175 NC_007406.1 2372472 2372690 R hypothetical protein complement(2372472..2372690) Nitrobacter winogradskyi Nb-255 3677258 YP_318782.1 CDS Nwi_2176 NC_007406.1 2372790 2373620 R serine O-acetyltransferase complement(2372790..2373620) Nitrobacter winogradskyi Nb-255 3677259 YP_318783.1 CDS Nwi_2177 NC_007406.1 2373772 2375244 D hypothetical protein 2373772..2375244 Nitrobacter winogradskyi Nb-255 3677260 YP_318784.1 CDS Nwi_2178 NC_007406.1 2375202 2375954 R alpha/beta hydrolase complement(2375202..2375954) Nitrobacter winogradskyi Nb-255 3677261 YP_318785.1 CDS Nwi_2179 NC_007406.1 2376010 2376495 R hypothetical protein complement(2376010..2376495) Nitrobacter winogradskyi Nb-255 3677262 YP_318786.1 CDS Nwi_2180 NC_007406.1 2376081 2377181 R hypothetical protein complement(2376081..2377181) Nitrobacter winogradskyi Nb-255 3677263 YP_318787.1 CDS Nwi_2181 NC_007406.1 2377527 2377772 D hypothetical protein 2377527..2377772 Nitrobacter winogradskyi Nb-255 3677264 YP_318788.1 CDS Nwi_2182 NC_007406.1 2377745 2378983 D FAD-binding monooxygenase 2377745..2378983 Nitrobacter winogradskyi Nb-255 3677265 YP_318789.1 CDS Nwi_2183 NC_007406.1 2379034 2379423 R hypothetical protein complement(2379034..2379423) Nitrobacter winogradskyi Nb-255 3677266 YP_318790.1 CDS Nwi_2184 NC_007406.1 2379510 2380781 R peptidase M29, aminopeptidase II complement(2379510..2380781) Nitrobacter winogradskyi Nb-255 3675273 YP_318791.1 CDS Nwi_2185 NC_007406.1 2380927 2381109 R hypothetical protein complement(2380927..2381109) Nitrobacter winogradskyi Nb-255 3675274 YP_318792.1 CDS Nwi_2186 NC_007406.1 2381426 2381824 D hypothetical protein 2381426..2381824 Nitrobacter winogradskyi Nb-255 3675276 YP_318793.1 CDS Nwi_2187 NC_007406.1 2381840 2382445 R DSBA oxidoreductase complement(2381840..2382445) Nitrobacter winogradskyi Nb-255 3675277 YP_318794.1 CDS Nwi_2188 NC_007406.1 2382689 2383195 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(2382689..2383195) Nitrobacter winogradskyi Nb-255 3675278 YP_318795.1 CDS Nwi_2189 NC_007406.1 2383295 2384035 R molybdopterin-biosynthesis enzyme MoeA complement(2383295..2384035) Nitrobacter winogradskyi Nb-255 3675279 YP_318796.1 CDS Nwi_2190 NC_007406.1 2384208 2384507 R hypothetical protein complement(2384208..2384507) Nitrobacter winogradskyi Nb-255 3675280 YP_318797.1 CDS groES NC_007406.1 2384930 2385247 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2384930..2385247 Nitrobacter winogradskyi Nb-255 3675281 YP_318798.1 CDS groEL NC_007406.1 2385288 2386925 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is co-regulated with symbiotic nitrogen fixation genes; molecular chaperone GroEL 2385288..2386925 Nitrobacter winogradskyi Nb-255 3675282 YP_318799.1 CDS Nwi_2193 NC_007406.1 2387351 2387575 R hypothetical protein complement(2387351..2387575) Nitrobacter winogradskyi Nb-255 3675283 YP_318800.1 CDS Nwi_2194 NC_007406.1 2387807 2389303 R hypothetical protein complement(2387807..2389303) Nitrobacter winogradskyi Nb-255 3675284 YP_318801.1 CDS Nwi_2195 NC_007406.1 2389311 2390441 R glycosyl transferase family protein complement(2389311..2390441) Nitrobacter winogradskyi Nb-255 3675285 YP_318802.1 CDS Nwi_2196 NC_007406.1 2390732 2391535 D hypothetical protein 2390732..2391535 Nitrobacter winogradskyi Nb-255 3675286 YP_318803.1 CDS Nwi_2197 NC_007406.1 2391547 2392008 D hypothetical protein 2391547..2392008 Nitrobacter winogradskyi Nb-255 3675287 YP_318804.1 CDS Nwi_2198 NC_007406.1 2392133 2392879 D hypothetical protein 2392133..2392879 Nitrobacter winogradskyi Nb-255 3675288 YP_318805.1 CDS Nwi_2199 NC_007406.1 2392911 2394515 R molybdopterin binding protein complement(2392911..2394515) Nitrobacter winogradskyi Nb-255 3675289 YP_318806.1 CDS Nwi_2200 NC_007406.1 2394512 2395204 R hypothetical protein complement(2394512..2395204) Nitrobacter winogradskyi Nb-255 3675290 YP_318807.1 CDS Nwi_2201 NC_007406.1 2395248 2395571 R hypothetical protein complement(2395248..2395571) Nitrobacter winogradskyi Nb-255 3676869 YP_318808.1 CDS Nwi_2202 NC_007406.1 2395555 2396781 R von Willebrand factor A complement(2395555..2396781) Nitrobacter winogradskyi Nb-255 3676870 YP_318809.1 CDS Nwi_2203 NC_007406.1 2396794 2397738 R ATPase AAA complement(2396794..2397738) Nitrobacter winogradskyi Nb-255 3676871 YP_318810.1 CDS Nwi_2204 NC_007406.1 2397740 2398546 R molybdopterin dehydrogenase complement(2397740..2398546) Nitrobacter winogradskyi Nb-255 3676872 YP_318811.1 CDS Nwi_2205 NC_007406.1 2398592 2399077 R aerobic carbon monoxide dehydrogenase complement(2398592..2399077) Nitrobacter winogradskyi Nb-255 3676873 YP_318812.1 CDS Nwi_2206 NC_007406.1 2399205 2399651 R carbon monoxide dehydrogenase subunit G complement(2399205..2399651) Nitrobacter winogradskyi Nb-255 3676874 YP_318813.1 CDS Nwi_2207 NC_007406.1 2399789 2400571 D alpha/beta hydrolase 2399789..2400571 Nitrobacter winogradskyi Nb-255 3676875 YP_318814.1 CDS Nwi_2208 NC_007406.1 2400730 2401254 R hypothetical protein complement(2400730..2401254) Nitrobacter winogradskyi Nb-255 3676876 YP_318815.1 CDS Nwi_2209 NC_007406.1 2401671 2402585 D branched chain amino acid ABC transporter permease 2401671..2402585 Nitrobacter winogradskyi Nb-255 3676877 YP_318816.1 CDS Nwi_2210 NC_007406.1 2402611 2403981 D branched-chain amino acid ABC transporter permease 2402611..2403981 Nitrobacter winogradskyi Nb-255 3676878 YP_318817.1 CDS Nwi_2211 NC_007406.1 2403978 2404814 D ABC transporter ATPase 2403978..2404814 Nitrobacter winogradskyi Nb-255 3676879 YP_318818.1 CDS Nwi_2212 NC_007406.1 2404811 2405554 D ABC transporter ATPase 2404811..2405554 Nitrobacter winogradskyi Nb-255 3676880 YP_318819.1 CDS Nwi_2213 NC_007406.1 2405842 2406957 D extracellular ligand-binding receptor 2405842..2406957 Nitrobacter winogradskyi Nb-255 3676881 YP_318820.1 CDS Nwi_2214 NC_007406.1 2407053 2407787 R cytochrome c biogenesis protein, transmembrane region complement(2407053..2407787) Nitrobacter winogradskyi Nb-255 3676882 YP_318821.1 CDS Nwi_2215 NC_007406.1 2407938 2408936 D peptidase S58, DmpA 2407938..2408936 Nitrobacter winogradskyi Nb-255 3676883 YP_318822.1 CDS Nwi_2216 NC_007406.1 2409121 2409378 D hypothetical protein 2409121..2409378 Nitrobacter winogradskyi Nb-255 3676884 YP_318823.1 CDS Nwi_2217 NC_007406.1 2409482 2410684 R hypothetical protein complement(2409482..2410684) Nitrobacter winogradskyi Nb-255 3676885 YP_318824.1 CDS Nwi_2218 NC_007406.1 2410903 2411604 D ribulose-phosphate 3-epimerase 2410903..2411604 Nitrobacter winogradskyi Nb-255 3676416 YP_318825.1 CDS Nwi_2219 NC_007406.1 2412121 2414199 D TonB-dependent receptor 2412121..2414199 Nitrobacter winogradskyi Nb-255 3676417 YP_318826.1 CDS Nwi_2220 NC_007406.1 2414385 2414966 R hypothetical protein complement(2414385..2414966) Nitrobacter winogradskyi Nb-255 3676418 YP_318827.1 CDS Nwi_2221 NC_007406.1 2414989 2416806 R Signal transduction histidine kinase complement(2414989..2416806) Nitrobacter winogradskyi Nb-255 3677187 YP_318828.1 CDS Nwi_2222 NC_007406.1 2417238 2417654 D hypothetical protein 2417238..2417654 Nitrobacter winogradskyi Nb-255 3677188 YP_318829.1 CDS Nwi_2223 NC_007406.1 2417730 2418158 D Fe-S metabolism associated SufE 2417730..2418158 Nitrobacter winogradskyi Nb-255 3677189 YP_318830.1 CDS Nwi_2224 NC_007406.1 2418437 2418802 D ISBm1, transposase orfA 2418437..2418802 Nitrobacter winogradskyi Nb-255 3677190 YP_318831.1 CDS Nwi_2225 NC_007406.1 2419264 2420214 D integrase catalytic subunit 2419264..2420214 Nitrobacter winogradskyi Nb-255 3677191 YP_318832.1 CDS Nwi_2226 NC_007406.1 2420242 2421234 R DNA replication initiation ATPase complement(2420242..2421234) Nitrobacter winogradskyi Nb-255 3677192 YP_318833.1 CDS Nwi_2227 NC_007406.1 2421381 2421794 R ROSMUCR transcriptional regulator complement(2421381..2421794) Nitrobacter winogradskyi Nb-255 3677193 YP_318834.1 CDS Nwi_2228 NC_007406.1 2421929 2422753 R hypothetical protein complement(2421929..2422753) Nitrobacter winogradskyi Nb-255 3677194 YP_318835.1 CDS Nwi_2229 NC_007406.1 2423148 2424554 R hypothetical protein complement(2423148..2424554) Nitrobacter winogradskyi Nb-255 3677195 YP_318836.1 CDS Nwi_2230 NC_007406.1 2424589 2425881 R hypothetical protein complement(2424589..2425881) Nitrobacter winogradskyi Nb-255 3677196 YP_318837.1 CDS Nwi_2231 NC_007406.1 2426011 2427576 R hypothetical protein complement(2426011..2427576) Nitrobacter winogradskyi Nb-255 3677197 YP_318838.1 CDS Nwi_2232 NC_007406.1 2428157 2428564 D hypothetical protein 2428157..2428564 Nitrobacter winogradskyi Nb-255 3674177 YP_318839.1 CDS Nwi_2233 NC_007406.1 2428648 2429526 D dihydropteroate synthase 2428648..2429526 Nitrobacter winogradskyi Nb-255 3674178 YP_318840.1 CDS Nwi_2234 NC_007406.1 2429523 2429888 D dihydroneopterin aldolase 2429523..2429888 Nitrobacter winogradskyi Nb-255 3674179 YP_318841.1 CDS Nwi_2235 NC_007406.1 2429897 2430388 D 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 2429897..2430388 Nitrobacter winogradskyi Nb-255 3674180 YP_318842.1 CDS Nwi_2236 NC_007406.1 2430469 2432388 D methylmalonyl-CoA mutase 2430469..2432388 Nitrobacter winogradskyi Nb-255 3674181 YP_318843.1 CDS Nwi_2237 NC_007406.1 2432385 2432849 D glutathione-dependent formaldehyde-activating protein 2432385..2432849 Nitrobacter winogradskyi Nb-255 3674182 YP_318844.1 CDS Nwi_2238 NC_007406.1 2432853 2435021 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 2432853..2435021 Nitrobacter winogradskyi Nb-255 3674183 YP_318845.1 CDS Nwi_2239 NC_007406.1 2435185 2435997 D hypothetical protein 2435185..2435997 Nitrobacter winogradskyi Nb-255 3674184 YP_318846.1 CDS Nwi_2240 NC_007406.1 2435994 2436974 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 2435994..2436974 Nitrobacter winogradskyi Nb-255 3677129 YP_318847.1 CDS Nwi_2241 NC_007406.1 2437120 2437761 D peptidase C15, pyroglutamyl peptidase I 2437120..2437761 Nitrobacter winogradskyi Nb-255 3677130 YP_318848.1 CDS Nwi_2242 NC_007406.1 2438008 2439300 D Bcr/CflA subfamily drug resistance transporter 2438008..2439300 Nitrobacter winogradskyi Nb-255 3677131 YP_318849.1 CDS Nwi_2243 NC_007406.1 2439403 2440770 D nitrous oxidase accessory protein 2439403..2440770 Nitrobacter winogradskyi Nb-255 3677132 YP_318850.1 CDS Nwi_2244 NC_007406.1 2440934 2441428 R hypothetical protein complement(2440934..2441428) Nitrobacter winogradskyi Nb-255 3677133 YP_318851.1 CDS Nwi_2245 NC_007406.1 2441839 2442042 R CsbD-like protein complement(2441839..2442042) Nitrobacter winogradskyi Nb-255 3677134 YP_318852.1 CDS Nwi_2246 NC_007406.1 2442826 2444709 R peptidase S8/S53 subtilisin kexin sedolisin complement(2442826..2444709) Nitrobacter winogradskyi Nb-255 3677135 YP_318853.1 CDS Nwi_2247 NC_007406.1 2444787 2445479 R hypothetical protein complement(2444787..2445479) Nitrobacter winogradskyi Nb-255 3677136 YP_318854.1 CDS Nwi_2248 NC_007406.1 2445476 2446045 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(2445476..2446045) Nitrobacter winogradskyi Nb-255 3677137 YP_318855.1 CDS Nwi_2249 NC_007406.1 2446514 2446759 R hypothetical protein complement(2446514..2446759) Nitrobacter winogradskyi Nb-255 3677138 YP_318856.1 CDS Nwi_2250 NC_007406.1 2446874 2447680 D hypothetical protein 2446874..2447680 Nitrobacter winogradskyi Nb-255 3677139 YP_318857.1 CDS Nwi_2251 NC_007406.1 2447786 2448508 D hypothetical protein 2447786..2448508 Nitrobacter winogradskyi Nb-255 3677140 YP_318858.1 CDS Nwi_2252 NC_007406.1 2448842 2449621 D enoyl-CoA hydratase 2448842..2449621 Nitrobacter winogradskyi Nb-255 3677141 YP_318859.1 CDS Nwi_2253 NC_007406.1 2449667 2451514 R hypothetical protein complement(2449667..2451514) Nitrobacter winogradskyi Nb-255 3677142 YP_318860.1 CDS Nwi_2254 NC_007406.1 2451710 2452957 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(2451710..2452957) Nitrobacter winogradskyi Nb-255 3677143 YP_318861.1 CDS dnaE2 NC_007406.1 2453061 2456588 R DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase complement(2453061..2456588) Nitrobacter winogradskyi Nb-255 3677144 YP_318862.1 CDS Nwi_2256 NC_007406.1 2456585 2458090 R hypothetical protein complement(2456585..2458090) Nitrobacter winogradskyi Nb-255 3677145 YP_318863.1 CDS Nwi_2257 NC_007406.1 2458131 2458943 R hypothetical protein complement(2458131..2458943) Nitrobacter winogradskyi Nb-255 3677146 YP_318864.1 CDS Nwi_2258 NC_007406.1 2459113 2460357 D elongator protein 3/MiaB/NifB 2459113..2460357 Nitrobacter winogradskyi Nb-255 3677147 YP_318865.1 CDS Nwi_2259 NC_007406.1 2460354 2461097 D phage SPO1 DNA polymerase-like protein 2460354..2461097 Nitrobacter winogradskyi Nb-255 3677148 YP_318866.1 CDS Nwi_2260 NC_007406.1 2461390 2462106 D ISRm2011-2 transposase 2461390..2462106 Nitrobacter winogradskyi Nb-255 3675165 YP_318867.1 CDS Nwi_2261 NC_007406.1 2462166 2462843 D phage SPO1 DNA polymerase-like protein 2462166..2462843 Nitrobacter winogradskyi Nb-255 3675166 YP_318868.1 CDS Nwi_2262 NC_007406.1 2462884 2464053 R peptidase M20D, amidohydrolase complement(2462884..2464053) Nitrobacter winogradskyi Nb-255 3675167 YP_318869.1 CDS Nwi_2263 NC_007406.1 2464130 2465521 R class III aminotransferase complement(2464130..2465521) Nitrobacter winogradskyi Nb-255 3675168 YP_318870.1 CDS Nwi_2264 NC_007406.1 2465631 2466272 D hypothetical protein 2465631..2466272 Nitrobacter winogradskyi Nb-255 3675169 YP_318871.1 CDS Nwi_2265 NC_007406.1 2466240 2468903 R hypothetical protein complement(2466240..2468903) Nitrobacter winogradskyi Nb-255 3675170 YP_318872.1 CDS ispH NC_007406.1 2469319 2470263 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2469319..2470263 Nitrobacter winogradskyi Nb-255 3675171 YP_318873.1 CDS Nwi_2267 NC_007406.1 2470310 2471479 D Fe-S oxidoreductase 2470310..2471479 Nitrobacter winogradskyi Nb-255 3675172 YP_318874.1 CDS Nwi_2268 NC_007406.1 2472000 2472830 R hypothetical protein complement(2472000..2472830) Nitrobacter winogradskyi Nb-255 3675173 YP_318875.1 CDS Nwi_2269 NC_007406.1 2472851 2474815 R terpene synthase/squalene cyclase complement(2472851..2474815) Nitrobacter winogradskyi Nb-255 3675174 YP_318876.1 CDS Nwi_2270 NC_007406.1 2474829 2476082 R amine oxidase complement(2474829..2476082) Nitrobacter winogradskyi Nb-255 3675175 YP_318877.1 CDS Nwi_2271 NC_007406.1 2476082 2476918 R squalene/phytoene synthase complement(2476082..2476918) Nitrobacter winogradskyi Nb-255 3675176 YP_318878.1 CDS Nwi_2272 NC_007406.1 2476915 2477793 R squalene/phytoene synthase complement(2476915..2477793) Nitrobacter winogradskyi Nb-255 3675177 YP_318879.1 CDS Nwi_2273 NC_007406.1 2477987 2478244 R hypothetical protein complement(2477987..2478244) Nitrobacter winogradskyi Nb-255 3675178 YP_318880.1 CDS Nwi_2274 NC_007406.1 2478790 2479290 D hypothetical protein 2478790..2479290 Nitrobacter winogradskyi Nb-255 3675179 YP_318881.1 CDS Nwi_2275 NC_007406.1 2479332 2481725 R RND superfamily transporter complement(2479332..2481725) Nitrobacter winogradskyi Nb-255 3675180 YP_318882.1 CDS Nwi_2276 NC_007406.1 2482067 2483728 R Fe-S oxidoreductase complement(2482067..2483728) Nitrobacter winogradskyi Nb-255 3675181 YP_318883.1 CDS Nwi_2277 NC_007406.1 2484111 2485460 R catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase complement(2484111..2485460) Nitrobacter winogradskyi Nb-255 3675182 YP_318884.1 CDS Nwi_2278 NC_007406.1 2485555 2488341 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(2485555..2488341) Nitrobacter winogradskyi Nb-255 3675183 YP_318885.1 CDS Nwi_2279 NC_007406.1 2488894 2490090 D cytochrome P450 2488894..2490090 Nitrobacter winogradskyi Nb-255 3675727 YP_318886.1 CDS Nwi_2280 NC_007406.1 2490127 2491347 D OsmC-like protein 2490127..2491347 Nitrobacter winogradskyi Nb-255 3675728 YP_318887.1 CDS Nwi_2281 NC_007406.1 2491412 2491663 R hypothetical protein complement(2491412..2491663) Nitrobacter winogradskyi Nb-255 3675729 YP_318888.1 CDS Nwi_2282 NC_007406.1 2491756 2493009 R FAD dependent oxidoreductase complement(2491756..2493009) Nitrobacter winogradskyi Nb-255 3675730 YP_318889.1 CDS Nwi_2283 NC_007406.1 2493245 2496340 R acriflavin resistance protein complement(2493245..2496340) Nitrobacter winogradskyi Nb-255 3675731 YP_318890.1 CDS Nwi_2284 NC_007406.1 2496543 2497754 R secretion protein HlyD complement(2496543..2497754) Nitrobacter winogradskyi Nb-255 3675732 YP_318891.1 CDS Nwi_2285 NC_007406.1 2497756 2498457 R TetR family transcriptional regulator complement(2497756..2498457) Nitrobacter winogradskyi Nb-255 3675733 YP_318892.1 CDS Nwi_2286 NC_007406.1 2498592 2499851 R Glu/Leu/Phe/Val dehydrogenase complement(2498592..2499851) Nitrobacter winogradskyi Nb-255 3675734 YP_318893.1 CDS Nwi_2287 NC_007406.1 2500129 2501349 R FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2500129..2501349) Nitrobacter winogradskyi Nb-255 3675735 YP_318894.1 CDS Nwi_2288 NC_007406.1 2501580 2502854 D beta-lactamase 2501580..2502854 Nitrobacter winogradskyi Nb-255 3675736 YP_318895.1 CDS Nwi_2289 NC_007406.1 2502904 2503785 R HpcH/HpaI aldolase complement(2502904..2503785) Nitrobacter winogradskyi Nb-255 3675737 YP_318896.1 CDS Nwi_2290 NC_007406.1 2503782 2504234 R acyl dehydratase MaoC complement(2503782..2504234) Nitrobacter winogradskyi Nb-255 3675738 YP_318897.1 CDS Nwi_2291 NC_007406.1 2504641 2505000 D hypothetical protein 2504641..2505000 Nitrobacter winogradskyi Nb-255 3675739 YP_318898.1 CDS Nwi_2292 NC_007406.1 2505053 2505538 R hypothetical protein complement(2505053..2505538) Nitrobacter winogradskyi Nb-255 3675740 YP_318899.1 CDS Nwi_2293 NC_007406.1 2506169 2506471 R hypothetical protein complement(2506169..2506471) Nitrobacter winogradskyi Nb-255 3675741 YP_318900.1 CDS Nwi_2294 NC_007406.1 2506682 2509003 R TonB-dependent siderophore receptor complement(2506682..2509003) Nitrobacter winogradskyi Nb-255 3675742 YP_318901.1 CDS Nwi_2295 NC_007406.1 2509115 2509642 R N-acetyltransferase complement(2509115..2509642) Nitrobacter winogradskyi Nb-255 3675743 YP_318902.1 CDS Nwi_2296 NC_007406.1 2509750 2512008 R TonB-dependent receptor complement(2509750..2512008) Nitrobacter winogradskyi Nb-255 3675744 YP_318903.1 CDS Nwi_2297 NC_007406.1 2512116 2513099 R FecR protein complement(2512116..2513099) Nitrobacter winogradskyi Nb-255 3675745 YP_318904.1 CDS Nwi_2298 NC_007406.1 2513821 2514711 R xylose isomerase-like TIM barrel complement(2513821..2514711) Nitrobacter winogradskyi Nb-255 3675746 YP_318905.1 CDS Nwi_2299 NC_007406.1 2514690 2516000 R hypothetical protein complement(2514690..2516000) Nitrobacter winogradskyi Nb-255 3675923 YP_318906.1 CDS Nwi_2300 NC_007406.1 2515997 2517268 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2515997..2517268) Nitrobacter winogradskyi Nb-255 3675924 YP_318907.1 CDS Nwi_2301 NC_007406.1 2517265 2518953 R siderophore synthetase component complement(2517265..2518953) Nitrobacter winogradskyi Nb-255 3675925 YP_318908.1 CDS Nwi_2302 NC_007406.1 2518982 2520811 R siderophore synthetase component complement(2518982..2520811) Nitrobacter winogradskyi Nb-255 3675926 YP_318909.1 CDS Nwi_2303 NC_007406.1 2521034 2521534 D fec I like protein 2521034..2521534 Nitrobacter winogradskyi Nb-255 3675927 YP_318910.1 CDS Nwi_2304 NC_007406.1 2521277 2522074 R hypothetical protein complement(2521277..2522074) Nitrobacter winogradskyi Nb-255 3675928 YP_318911.1 CDS Nwi_2305 NC_007406.1 2522735 2523697 D MotA/TolQ/ExbB proton channel 2522735..2523697 Nitrobacter winogradskyi Nb-255 3675929 YP_318912.1 CDS Nwi_2306 NC_007406.1 2523702 2524172 D biopolymer transport protein ExbD/TolR 2523702..2524172 Nitrobacter winogradskyi Nb-255 3675930 YP_318913.1 CDS Nwi_2307 NC_007406.1 2524174 2524965 D TonB-like protein 2524174..2524965 Nitrobacter winogradskyi Nb-255 3675931 YP_318914.1 CDS Nwi_2308 NC_007406.1 2525226 2525579 R hypothetical protein complement(2525226..2525579) Nitrobacter winogradskyi Nb-255 3675932 YP_318915.1 CDS Nwi_2309 NC_007406.1 2526016 2527869 R glycoside hydrolase 15-related complement(2526016..2527869) Nitrobacter winogradskyi Nb-255 3675933 YP_318916.1 CDS Nwi_2310 NC_007406.1 2527984 2529099 R short chain dehydrogenase complement(2527984..2529099) Nitrobacter winogradskyi Nb-255 3675934 YP_318917.1 CDS Nwi_2311 NC_007406.1 2529273 2530037 D hypothetical protein 2529273..2530037 Nitrobacter winogradskyi Nb-255 3675935 YP_318918.1 CDS Nwi_2312 NC_007406.1 2530034 2530552 D hypothetical protein 2530034..2530552 Nitrobacter winogradskyi Nb-255 3675936 YP_318919.1 CDS Nwi_2313 NC_007406.1 2530525 2531259 D cytochrome c oxidase subunit II 2530525..2531259 Nitrobacter winogradskyi Nb-255 3675937 YP_318920.1 CDS Nwi_2314 NC_007406.1 2531256 2533775 D cytochrome c oxidase subunit I 2531256..2533775 Nitrobacter winogradskyi Nb-255 3675938 YP_318921.1 CDS Nwi_2315 NC_007406.1 2533772 2534134 D hypothetical protein 2533772..2534134 Nitrobacter winogradskyi Nb-255 3675939 YP_318922.1 CDS Nwi_2316 NC_007406.1 2534146 2534640 R hypothetical protein complement(2534146..2534640) Nitrobacter winogradskyi Nb-255 3675940 YP_318923.1 CDS Nwi_2317 NC_007406.1 2534950 2535354 D hypothetical protein 2534950..2535354 Nitrobacter winogradskyi Nb-255 3675941 YP_318924.1 CDS Nwi_2318 NC_007406.1 2535457 2537796 D TonB-dependent siderophore receptor 2535457..2537796 Nitrobacter winogradskyi Nb-255 3674620 YP_318925.1 CDS Nwi_2319 NC_007406.1 2537868 2539253 D propeptide, PepSY amd peptidase M4 2537868..2539253 Nitrobacter winogradskyi Nb-255 3674621 YP_318926.1 CDS Nwi_2320 NC_007406.1 2539381 2539701 D small multidrug resistance protein 2539381..2539701 Nitrobacter winogradskyi Nb-255 3674622 YP_318927.1 CDS Nwi_2321 NC_007406.1 2539728 2540888 D amidinotransferase 2539728..2540888 Nitrobacter winogradskyi Nb-255 3674623 YP_318928.1 CDS hmuV NC_007406.1 2541136 2541945 R with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit complement(2541136..2541945) Nitrobacter winogradskyi Nb-255 3674624 YP_318929.1 CDS Nwi_2323 NC_007406.1 2541942 2543039 R Fe3+-siderophore ABC transporter permease complement(2541942..2543039) Nitrobacter winogradskyi Nb-255 3674625 YP_318930.1 CDS Nwi_2324 NC_007406.1 2543036 2543902 R periplasmic binding protein complement(2543036..2543902) Nitrobacter winogradskyi Nb-255 3674626 YP_318931.1 CDS Nwi_2325 NC_007406.1 2544237 2544572 D antibiotic biosynthesis monooxygenase 2544237..2544572 Nitrobacter winogradskyi Nb-255 3674627 YP_318932.1 CDS Nwi_2326 NC_007406.1 2544610 2545140 D hypothetical protein 2544610..2545140 Nitrobacter winogradskyi Nb-255 3674628 YP_318933.1 CDS Nwi_2327 NC_007406.1 2545486 2546730 D hypothetical protein 2545486..2546730 Nitrobacter winogradskyi Nb-255 3674629 YP_318934.1 CDS Nwi_2328 NC_007406.1 2546915 2547187 D hypothetical protein 2546915..2547187 Nitrobacter winogradskyi Nb-255 3674630 YP_318935.1 CDS Nwi_2329 NC_007406.1 2547239 2548219 R Fis family transcriptional regulator complement(2547239..2548219) Nitrobacter winogradskyi Nb-255 3674631 YP_318936.1 CDS Nwi_2330 NC_007406.1 2548216 2548590 R transposase IS3/IS911 complement(2548216..2548590) Nitrobacter winogradskyi Nb-255 3674632 YP_318937.1 CDS Nwi_2331 NC_007406.1 2548746 2549231 D guanosine polyphosphate pyrophosphohydrolase/synthetase 2548746..2549231 Nitrobacter winogradskyi Nb-255 3674633 YP_318938.1 CDS Nwi_2332 NC_007406.1 2549498 2549872 D transposase 2549498..2549872 Nitrobacter winogradskyi Nb-255 3674634 YP_318939.1 CDS Nwi_2333 NC_007406.1 2550344 2551381 R hypothetical protein complement(2550344..2551381) Nitrobacter winogradskyi Nb-255 3676381 YP_318940.1 CDS Nwi_2334 NC_007406.1 2552474 2552800 D hypothetical protein 2552474..2552800 Nitrobacter winogradskyi Nb-255 3676382 YP_318941.1 CDS Nwi_2335 NC_007406.1 2552803 2553270 D hypothetical protein 2552803..2553270 Nitrobacter winogradskyi Nb-255 3676383 YP_318942.1 CDS Nwi_2336 NC_007406.1 2553267 2554865 D resolvase 2553267..2554865 Nitrobacter winogradskyi Nb-255 3676384 YP_318943.1 CDS Nwi_2337 NC_007406.1 2555459 2556037 R hypothetical protein complement(2555459..2556037) Nitrobacter winogradskyi Nb-255 3674483 YP_318944.1 CDS Nwi_2338 NC_007406.1 2556288 2557847 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(2556288..2557847) Nitrobacter winogradskyi Nb-255 3674484 YP_318945.1 CDS Nwi_2339 NC_007406.1 2558315 2559106 D ABC transporter ATPase 2558315..2559106 Nitrobacter winogradskyi Nb-255 3674485 YP_318946.1 CDS Nwi_2340 NC_007406.1 2559103 2560674 D glycine betaine ABC transporter substrate-binding protein/inner membrane protein 2559103..2560674 Nitrobacter winogradskyi Nb-255 3674486 YP_318947.1 CDS Nwi_2341 NC_007406.1 2560955 2561974 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(2560955..2561974) Nitrobacter winogradskyi Nb-255 3674487 YP_318948.1 CDS ilvH NC_007406.1 2562190 2562732 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(2562190..2562732) Nitrobacter winogradskyi Nb-255 3674488 YP_318949.1 CDS Nwi_2343 NC_007406.1 2562868 2564646 R catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; acetolactate synthase 3 catalytic subunit complement(2562868..2564646) Nitrobacter winogradskyi Nb-255 3674489 YP_318950.1 CDS Nwi_2344 NC_007406.1 2564960 2565904 R tRNA isopentenyltransferase complement(2564960..2565904) Nitrobacter winogradskyi Nb-255 3674490 YP_318951.1 CDS Nwi_2345 NC_007406.1 2565903 2566796 D phosphoserine phosphatase SerB 2565903..2566796 Nitrobacter winogradskyi Nb-255 3674491 YP_318952.1 CDS Nwi_2346 NC_007406.1 2566954 2568444 R peptidase S1C, Do complement(2566954..2568444) Nitrobacter winogradskyi Nb-255 3674492 YP_318953.1 CDS Nwi_2347 NC_007406.1 2568962 2569162 R hypothetical protein complement(2568962..2569162) Nitrobacter winogradskyi Nb-255 3674493 YP_318954.1 CDS Nwi_2348 NC_007406.1 2569420 2570316 R hypothetical protein complement(2569420..2570316) Nitrobacter winogradskyi Nb-255 3674494 YP_318955.1 CDS Nwi_2349 NC_007406.1 2570313 2571461 R HflK protein complement(2570313..2571461) Nitrobacter winogradskyi Nb-255 3674495 YP_318956.1 CDS Nwi_2350 NC_007406.1 2571619 2572155 R dihydrofolate reductase subunit complement(2571619..2572155) Nitrobacter winogradskyi Nb-255 3674496 YP_318957.1 CDS thyA NC_007406.1 2572152 2572946 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(2572152..2572946) Nitrobacter winogradskyi Nb-255 3674497 YP_318958.1 CDS Nwi_2352 NC_007406.1 2573702 2574250 D hypothetical protein 2573702..2574250 Nitrobacter winogradskyi Nb-255 3674499 YP_318959.1 CDS fumC NC_007406.1 2574337 2575746 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2574337..2575746 Nitrobacter winogradskyi Nb-255 3677305 YP_318960.1 CDS Nwi_2354 NC_007406.1 2575976 2576170 D hypothetical protein 2575976..2576170 Nitrobacter winogradskyi Nb-255 3677306 YP_318961.1 CDS Nwi_2355 NC_007406.1 2576167 2576421 D hypothetical protein 2576167..2576421 Nitrobacter winogradskyi Nb-255 3677307 YP_318962.1 CDS Nwi_2356 NC_007406.1 2577135 2577581 D arylsulfate sulfotransferase-like protein 2577135..2577581 Nitrobacter winogradskyi Nb-255 3677308 YP_318963.2 CDS Nwi_2357 NC_007406.1 2577493 2577867 D transposase IS3/IS911 2577493..2577867 Nitrobacter winogradskyi Nb-255 3677309 YP_318964.1 CDS Nwi_2358 NC_007406.1 2577864 2578844 D Fis family transcriptional regulator 2577864..2578844 Nitrobacter winogradskyi Nb-255 3677310 YP_318965.1 CDS Nwi_2359 NC_007406.1 2579094 2579267 R hypothetical protein complement(2579094..2579267) Nitrobacter winogradskyi Nb-255 3677311 YP_318966.1 CDS Nwi_2360 NC_007406.1 2579538 2581988 D UvrD/REP helicase 2579538..2581988 Nitrobacter winogradskyi Nb-255 3677312 YP_318967.1 CDS Nwi_2361 NC_007406.1 2582115 2583035 D ABC transporter ATPase 2582115..2583035 Nitrobacter winogradskyi Nb-255 3677313 YP_318968.1 CDS Nwi_2362 NC_007406.1 2583037 2583798 D ABC transporter permease 2583037..2583798 Nitrobacter winogradskyi Nb-255 3677314 YP_318969.1 CDS Nwi_2363 NC_007406.1 2583952 2584293 R hypothetical protein complement(2583952..2584293) Nitrobacter winogradskyi Nb-255 3677315 YP_318970.1 CDS Nwi_2364 NC_007406.1 2584589 2585401 D ErfK/YbiS/YcfS/YnhG protein 2584589..2585401 Nitrobacter winogradskyi Nb-255 3677316 YP_318971.1 CDS Nwi_2365 NC_007406.1 2585483 2587090 D FAD dependent oxidoreductase 2585483..2587090 Nitrobacter winogradskyi Nb-255 3677317 YP_318972.1 CDS Nwi_2366 NC_007406.1 2587441 2587710 D hypothetical protein 2587441..2587710 Nitrobacter winogradskyi Nb-255 3677318 YP_318973.1 CDS Nwi_2367 NC_007406.1 2587694 2588659 D ribosomal L11 methyltransferase 2587694..2588659 Nitrobacter winogradskyi Nb-255 3677319 YP_318974.1 CDS Nwi_2368 NC_007406.1 2588626 2590560 D peptidase M24 2588626..2590560 Nitrobacter winogradskyi Nb-255 3677320 YP_318975.1 CDS Nwi_2369 NC_007406.1 2590843 2591952 D hypothetical protein 2590843..2591952 Nitrobacter winogradskyi Nb-255 3677321 YP_318976.1 CDS Nwi_2370 NC_007406.1 2592339 2592980 R ISRm2011-2 transposase complement(2592339..2592980) Nitrobacter winogradskyi Nb-255 3677322 YP_318977.1 CDS Nwi_2371 NC_007406.1 2592932 2593282 R transposase complement(2592932..2593282) Nitrobacter winogradskyi Nb-255 3677323 YP_318978.1 CDS Nwi_2372 NC_007406.1 2593519 2594427 D hypothetical protein 2593519..2594427 Nitrobacter winogradskyi Nb-255 3674663 YP_318979.1 CDS Nwi_2373 NC_007406.1 2594349 2594843 D hypothetical protein 2594349..2594843 Nitrobacter winogradskyi Nb-255 3674664 YP_318980.1 CDS Nwi_2374 NC_007406.1 2594866 2595141 R hypothetical protein complement(2594866..2595141) Nitrobacter winogradskyi Nb-255 3674665 YP_318981.1 CDS Nwi_2375 NC_007406.1 2595216 2595425 R cold-shock protein, DNA-binding complement(2595216..2595425) Nitrobacter winogradskyi Nb-255 3674666 YP_318982.1 CDS Nwi_2376 NC_007406.1 2595585 2595956 D hypothetical protein 2595585..2595956 Nitrobacter winogradskyi Nb-255 3674667 YP_318983.1 CDS Nwi_2377 NC_007406.1 2596126 2597583 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(2596126..2597583) Nitrobacter winogradskyi Nb-255 3674668 YP_318984.1 CDS Nwi_2378 NC_007406.1 2597787 2598983 R methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2597787..2598983) Nitrobacter winogradskyi Nb-255 3674669 YP_318985.1 CDS Nwi_2379 NC_007406.1 2599040 2600392 R hypothetical protein complement(2599040..2600392) Nitrobacter winogradskyi Nb-255 3674670 YP_318986.1 CDS Nwi_2380 NC_007406.1 2600738 2602048 D UDP-glucose/GDP-mannose dehydrogenase 2600738..2602048 Nitrobacter winogradskyi Nb-255 3674671 YP_318987.1 CDS Nwi_2381 NC_007406.1 2602208 2602399 D hypothetical protein 2602208..2602399 Nitrobacter winogradskyi Nb-255 3674672 YP_318988.1 CDS purU NC_007406.1 2602422 2603279 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(2602422..2603279) Nitrobacter winogradskyi Nb-255 3674673 YP_318989.1 CDS Nwi_2383 NC_007406.1 2603651 2604652 D glycosyl transferase family protein 2603651..2604652 Nitrobacter winogradskyi Nb-255 3674674 YP_318990.1 CDS Nwi_2384 NC_007406.1 2604834 2605784 R NAD-dependent epimerase/dehydratase complement(2604834..2605784) Nitrobacter winogradskyi Nb-255 3676085 YP_318991.1 CDS Nwi_2385 NC_007406.1 2605765 2606850 R GDP-mannose 4,6-dehydratase complement(2605765..2606850) Nitrobacter winogradskyi Nb-255 3674414 YP_318992.1 CDS Nwi_2386 NC_007406.1 2607104 2608303 D group 1 glycosyl transferase 2607104..2608303 Nitrobacter winogradskyi Nb-255 3675476 YP_318993.1 CDS Nwi_2387 NC_007406.1 2608300 2609265 D NAD-dependent epimerase/dehydratase 2608300..2609265 Nitrobacter winogradskyi Nb-255 3675477 YP_318994.1 CDS Nwi_2388 NC_007406.1 2609417 2610730 D class III aminotransferase 2609417..2610730 Nitrobacter winogradskyi Nb-255 3675478 YP_318995.1 CDS Nwi_2389 NC_007406.1 2610737 2611435 R hypothetical protein complement(2610737..2611435) Nitrobacter winogradskyi Nb-255 3675479 YP_318996.1 CDS Nwi_2390 NC_007406.1 2611404 2612180 R histidine biosynthesis protein complement(2611404..2612180) Nitrobacter winogradskyi Nb-255 3675480 YP_318997.1 CDS Nwi_2391 NC_007406.1 2612191 2612829 R imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(2612191..2612829) Nitrobacter winogradskyi Nb-255 3675481 YP_318998.1 CDS Nwi_2392 NC_007406.1 2612855 2614033 R LPS biosynthesis protein complement(2612855..2614033) Nitrobacter winogradskyi Nb-255 3675383 YP_318999.1 CDS Nwi_2393 NC_007406.1 2614070 2614882 R short-chain dehydrogenase complement(2614070..2614882) Nitrobacter winogradskyi Nb-255 3675384 YP_319000.1 CDS Nwi_2394 NC_007406.1 2614879 2615919 R nucleotidyl transferase complement(2614879..2615919) Nitrobacter winogradskyi Nb-255 3675385 YP_319001.1 CDS Nwi_2395 NC_007406.1 2615916 2616554 R hexapeptide transferase complement(2615916..2616554) Nitrobacter winogradskyi Nb-255 3674928 YP_319002.1 CDS Nwi_2396 NC_007406.1 2616551 2617666 R antifreeze-like protein NeuB complement(2616551..2617666) Nitrobacter winogradskyi Nb-255 3675949 YP_319003.1 CDS Nwi_2397 NC_007406.1 2617772 2618521 D acylneuraminate cytidylyltransferase 2617772..2618521 Nitrobacter winogradskyi Nb-255 3675950 YP_319004.1 CDS Nwi_2398 NC_007406.1 2618500 2619729 D UDP-N-acetylglucosamine 2-epimerase 2618500..2619729 Nitrobacter winogradskyi Nb-255 3675951 YP_319005.1 CDS Nwi_2399 NC_007406.1 2619798 2620955 D hypothetical protein 2619798..2620955 Nitrobacter winogradskyi Nb-255 3675952 YP_319006.1 CDS Nwi_2400 NC_007406.1 2620990 2621793 R methyltransferase FkbM complement(2620990..2621793) Nitrobacter winogradskyi Nb-255 3675953 YP_319007.1 CDS Nwi_2401 NC_007406.1 2621928 2622878 D NAD-dependent epimerase/dehydratase 2621928..2622878 Nitrobacter winogradskyi Nb-255 3675954 YP_319008.1 CDS Nwi_2402 NC_007406.1 2622903 2624369 R hypothetical protein complement(2622903..2624369) Nitrobacter winogradskyi Nb-255 3675955 YP_319009.1 CDS Nwi_2403 NC_007406.1 2624638 2625897 R O-antigen and teichoic acid export protein complement(2624638..2625897) Nitrobacter winogradskyi Nb-255 3675956 YP_319010.1 CDS Nwi_2404 NC_007406.1 2626101 2627324 R hypothetical protein complement(2626101..2627324) Nitrobacter winogradskyi Nb-255 3675957 YP_319011.1 CDS Nwi_2405 NC_007406.1 2627501 2628709 R DegT/DnrJ/EryC1/StrS aminotransferase complement(2627501..2628709) Nitrobacter winogradskyi Nb-255 3675958 YP_319012.1 CDS Nwi_2406 NC_007406.1 2628719 2629723 R NAD-dependent epimerase/dehydratase complement(2628719..2629723) Nitrobacter winogradskyi Nb-255 3675959 YP_319013.1 CDS Nwi_2407 NC_007406.1 2630120 2631100 R Fis family transcriptional regulator complement(2630120..2631100) Nitrobacter winogradskyi Nb-255 3675960 YP_319014.1 CDS Nwi_2408 NC_007406.1 2631097 2631471 R transposase IS3/IS911 complement(2631097..2631471) Nitrobacter winogradskyi Nb-255 3675961 YP_319015.1 CDS Nwi_2409 NC_007406.1 2631492 2632145 D hypothetical protein 2631492..2632145 Nitrobacter winogradskyi Nb-255 3675962 YP_319016.1 CDS Nwi_2410 NC_007406.1 2632314 2633594 D O-antigen polymerase 2632314..2633594 Nitrobacter winogradskyi Nb-255 3675963 YP_319017.1 CDS Nwi_2411 NC_007406.1 2633766 2634482 R ISRm2011-2 transposase complement(2633766..2634482) Nitrobacter winogradskyi Nb-255 3677106 YP_319018.1 CDS Nwi_2412 NC_007406.1 2634866 2635231 D ISBm1, transposase orfA 2634866..2635231 Nitrobacter winogradskyi Nb-255 3677107 YP_319019.1 CDS Nwi_2413 NC_007406.1 2635754 2637001 R class V aminotransferase complement(2635754..2637001) Nitrobacter winogradskyi Nb-255 3677108 YP_319020.1 CDS Nwi_2414 NC_007406.1 2637292 2637561 D hypothetical protein 2637292..2637561 Nitrobacter winogradskyi Nb-255 3677109 YP_319021.1 CDS Nwi_2415 NC_007406.1 2637621 2637914 D hypothetical protein 2637621..2637914 Nitrobacter winogradskyi Nb-255 3677210 YP_319022.1 CDS Nwi_2416 NC_007406.1 2638083 2638523 D histidine triad (HIT) protein 2638083..2638523 Nitrobacter winogradskyi Nb-255 3676529 YP_319023.1 CDS Nwi_2417 NC_007406.1 2638700 2639452 R cyclic nucleotide-binding protein complement(2638700..2639452) Nitrobacter winogradskyi Nb-255 3676530 YP_319024.1 CDS Nwi_2418 NC_007406.1 2639680 2640159 D hypothetical protein 2639680..2640159 Nitrobacter winogradskyi Nb-255 3676531 YP_319025.1 CDS Nwi_2419 NC_007406.1 2640188 2641447 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2640188..2641447) Nitrobacter winogradskyi Nb-255 3676532 YP_319026.1 CDS bioD NC_007406.1 2641444 2642085 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(2641444..2642085) Nitrobacter winogradskyi Nb-255 3676533 YP_319027.1 CDS Nwi_2421 NC_007406.1 2642082 2643218 R catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase complement(2642082..2643218) Nitrobacter winogradskyi Nb-255 3676534 YP_319028.1 CDS Nwi_2422 NC_007406.1 2643259 2643588 R hypothetical protein complement(2643259..2643588) Nitrobacter winogradskyi Nb-255 3676535 YP_319029.1 CDS Nwi_2423 NC_007406.1 2643783 2644760 D hypothetical protein 2643783..2644760 Nitrobacter winogradskyi Nb-255 3676536 YP_319030.1 CDS Nwi_2424 NC_007406.1 2644813 2645796 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2644813..2645796 Nitrobacter winogradskyi Nb-255 3676537 YP_319031.1 CDS Nwi_2425 NC_007406.1 2645793 2647322 D catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2645793..2647322 Nitrobacter winogradskyi Nb-255 3676538 YP_319032.1 CDS Nwi_2426 NC_007406.1 2647341 2648204 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 2647341..2648204 Nitrobacter winogradskyi Nb-255 3676539 YP_319033.1 CDS Nwi_2427 NC_007406.1 2648267 2648719 D hypothetical protein 2648267..2648719 Nitrobacter winogradskyi Nb-255 3676540 YP_319034.1 CDS Nwi_2428 NC_007406.1 2649252 2649665 D hypothetical protein 2649252..2649665 Nitrobacter winogradskyi Nb-255 3676541 YP_319035.1 CDS Nwi_2429 NC_007406.1 2650050 2651270 D diguanylate cyclase 2650050..2651270 Nitrobacter winogradskyi Nb-255 3676542 YP_319036.1 CDS Nwi_2430 NC_007406.1 2651690 2652589 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(2651690..2652589) Nitrobacter winogradskyi Nb-255 3676543 YP_319037.1 CDS Nwi_2431 NC_007406.1 2652806 2653861 R pseudouridine synthase complement(2652806..2653861) Nitrobacter winogradskyi Nb-255 3674583 YP_319038.1 CDS Nwi_2432 NC_007406.1 2653860 2654192 D hypothetical protein 2653860..2654192 Nitrobacter winogradskyi Nb-255 3674584 YP_319039.1 CDS Nwi_2433 NC_007406.1 2655487 2656467 R Fis family transcriptional regulator complement(2655487..2656467) Nitrobacter winogradskyi Nb-255 3674586 YP_319040.1 CDS Nwi_2434 NC_007406.1 2656464 2656838 R transposase IS3/IS911 complement(2656464..2656838) Nitrobacter winogradskyi Nb-255 3674587 YP_319041.1 CDS Nwi_2436 NC_007406.1 2657155 2658195 R hypothetical protein complement(2657155..2658195) Nitrobacter winogradskyi Nb-255 3674589 YP_319042.1 CDS Nwi_2437 NC_007406.1 2658740 2659456 D ISRm2011-2 transposase 2658740..2659456 Nitrobacter winogradskyi Nb-255 3674590 YP_319043.1 CDS Nwi_2438 NC_007406.1 2659543 2660361 R lytic murein transglycosylase complement(2659543..2660361) Nitrobacter winogradskyi Nb-255 3674591 YP_319044.1 CDS Nwi_2439 NC_007406.1 2660420 2661121 D hypothetical protein 2660420..2661121 Nitrobacter winogradskyi Nb-255 3674592 YP_319045.1 CDS Nwi_2440 NC_007406.1 2661161 2663314 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(2661161..2663314) Nitrobacter winogradskyi Nb-255 3674593 YP_319046.1 CDS dnaG NC_007406.1 2664131 2666035 R synthesizes RNA primers at the replication forks; DNA primase complement(2664131..2666035) Nitrobacter winogradskyi Nb-255 3674594 YP_319047.1 CDS Nwi_2442 NC_007406.1 2666169 2666720 D hypothetical protein 2666169..2666720 Nitrobacter winogradskyi Nb-255 3674595 YP_319048.1 CDS Nwi_2443 NC_007406.1 2666717 2667517 D N-formylglutamate amidohydrolase 2666717..2667517 Nitrobacter winogradskyi Nb-255 3674596 YP_319049.1 CDS Nwi_2444 NC_007406.1 2667706 2667870 R hypothetical protein complement(2667706..2667870) Nitrobacter winogradskyi Nb-255 3674597 YP_319050.1 CDS Nwi_2445 NC_007406.1 2668109 2668564 R hypothetical protein complement(2668109..2668564) Nitrobacter winogradskyi Nb-255 3674598 YP_319051.1 CDS Nwi_2446 NC_007406.1 2668718 2669908 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2668718..2669908 Nitrobacter winogradskyi Nb-255 3674599 YP_319052.1 CDS Nwi_2447 NC_007406.1 2669993 2670529 R ferritin complement(2669993..2670529) Nitrobacter winogradskyi Nb-255 3674600 YP_319053.1 CDS Nwi_2448 NC_007406.1 2670583 2671437 D hypothetical protein 2670583..2671437 Nitrobacter winogradskyi Nb-255 3674822 YP_319054.1 CDS carB NC_007406.1 2672502 2675966 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2672502..2675966 Nitrobacter winogradskyi Nb-255 3674825 YP_319055.1 CDS greA NC_007406.1 2676420 2676896 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2676420..2676896 Nitrobacter winogradskyi Nb-255 3674826 YP_319056.1 CDS Nwi_2451 NC_007406.1 2677063 2677461 D hypothetical protein 2677063..2677461 Nitrobacter winogradskyi Nb-255 3674827 YP_319057.1 CDS Nwi_2452 NC_007406.1 2677479 2677991 R asnC family transcriptional regulator complement(2677479..2677991) Nitrobacter winogradskyi Nb-255 3674828 YP_319058.1 CDS Nwi_2453 NC_007406.1 2678309 2679274 D thioredoxin reductase 2678309..2679274 Nitrobacter winogradskyi Nb-255 3674829 YP_319059.1 CDS Nwi_2454 NC_007406.1 2679289 2680182 D LysR family transcriptional regulator 2679289..2680182 Nitrobacter winogradskyi Nb-255 3674830 YP_319060.1 CDS Nwi_2455 NC_007406.1 2680332 2681012 R cobyrinic acid a,c-diamide synthase complement(2680332..2681012) Nitrobacter winogradskyi Nb-255 3674831 YP_319061.1 CDS Nwi_2456 NC_007406.1 2681201 2681512 R hypothetical protein complement(2681201..2681512) Nitrobacter winogradskyi Nb-255 3674832 YP_319062.1 CDS Nwi_2457 NC_007406.1 2681619 2681771 R hypothetical protein complement(2681619..2681771) Nitrobacter winogradskyi Nb-255 3674833 YP_319063.1 CDS Nwi_2458 NC_007406.1 2682494 2683612 R extensin-like protein complement(2682494..2683612) Nitrobacter winogradskyi Nb-255 3674835 YP_319064.1 CDS Nwi_2459 NC_007406.1 2683954 2685510 D hypothetical protein 2683954..2685510 Nitrobacter winogradskyi Nb-255 3674836 YP_319065.1 CDS Nwi_2460 NC_007406.1 2685585 2685797 R hypothetical protein complement(2685585..2685797) Nitrobacter winogradskyi Nb-255 3674837 YP_319066.1 CDS Nwi_2461 NC_007406.1 2685944 2686453 R hypothetical protein complement(2685944..2686453) Nitrobacter winogradskyi Nb-255 3674413 YP_319067.1 CDS Nwi_2462 NC_007406.1 2686535 2686894 R hypothetical protein complement(2686535..2686894) Nitrobacter winogradskyi Nb-255 3675496 YP_319068.1 CDS Nwi_2463 NC_007406.1 2687120 2687596 D lytic transglycosylase, catalytic 2687120..2687596 Nitrobacter winogradskyi Nb-255 3674680 YP_319069.1 CDS Nwi_2464 NC_007406.1 2687822 2688838 D FAD dependent oxidoreductase 2687822..2688838 Nitrobacter winogradskyi Nb-255 3674681 YP_319070.1 CDS Nwi_2465 NC_007406.1 2688829 2689026 D sulfur carrier protein ThiS 2688829..2689026 Nitrobacter winogradskyi Nb-255 3674682 YP_319071.1 CDS thiG NC_007406.1 2689092 2689874 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2689092..2689874 Nitrobacter winogradskyi Nb-255 3674683 YP_319072.1 CDS Nwi_2467 NC_007406.1 2689861 2690505 D thiamine monophosphate synthase 2689861..2690505 Nitrobacter winogradskyi Nb-255 3674684 YP_319073.1 CDS Nwi_2468 NC_007406.1 2690618 2692558 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2690618..2692558 Nitrobacter winogradskyi Nb-255 3674685 YP_319074.1 CDS Nwi_2469 NC_007406.1 2692561 2693625 D hypothetical protein 2692561..2693625 Nitrobacter winogradskyi Nb-255 3674686 YP_319075.1 CDS Nwi_2470 NC_007406.1 2694059 2694313 D Fis family transcriptional regulator 2694059..2694313 Nitrobacter winogradskyi Nb-255 3674687 YP_319076.1 CDS Nwi_2471 NC_007406.1 2694494 2696581 D peptidase S9, prolyl oligopeptidase 2694494..2696581 Nitrobacter winogradskyi Nb-255 3674688 YP_319077.1 CDS Nwi_2472 NC_007406.1 2696673 2697224 D triple helix repeat-containing collagen 2696673..2697224 Nitrobacter winogradskyi Nb-255 3674689 YP_319078.1 CDS Nwi_2473 NC_007406.1 2697566 2697934 R transposase, IS4 complement(2697566..2697934) Nitrobacter winogradskyi Nb-255 3674690 YP_319079.1 CDS Nwi_2474 NC_007406.1 2697949 2698347 R transposase complement(2697949..2698347) Nitrobacter winogradskyi Nb-255 3674691 YP_319080.1 CDS Nwi_2475 NC_007406.1 2698403 2698885 R bacterioferritin complement(2698403..2698885) Nitrobacter winogradskyi Nb-255 3674692 YP_319081.1 CDS Nwi_2476 NC_007406.1 2699048 2699305 R bacterioferritin complement(2699048..2699305) Nitrobacter winogradskyi Nb-255 3674693 YP_319082.1 CDS Nwi_2477 NC_007406.1 2699629 2699946 D hypothetical protein 2699629..2699946 Nitrobacter winogradskyi Nb-255 3674694 YP_319083.1 CDS Nwi_2478 NC_007406.1 2700244 2700546 D hypothetical protein 2700244..2700546 Nitrobacter winogradskyi Nb-255 3674695 YP_319084.1 CDS Nwi_2479 NC_007406.1 2700704 2701963 R lytic murein transglycosylase complement(2700704..2701963) Nitrobacter winogradskyi Nb-255 3674696 YP_319085.1 CDS Nwi_2480 NC_007406.1 2701965 2702555 R hypothetical protein complement(2701965..2702555) Nitrobacter winogradskyi Nb-255 3676794 YP_319086.1 CDS Nwi_2481 NC_007406.1 2702727 2703497 R catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; trans-aconitate 2-methyltransferase complement(2702727..2703497) Nitrobacter winogradskyi Nb-255 3676795 YP_319087.1 CDS Nwi_2482 NC_007406.1 2703669 2705657 R hypothetical protein complement(2703669..2705657) Nitrobacter winogradskyi Nb-255 3676796 YP_319088.1 CDS Nwi_2483 NC_007406.1 2705897 2706196 D hypothetical protein 2705897..2706196 Nitrobacter winogradskyi Nb-255 3676797 YP_319089.1 CDS Nwi_2484 NC_007406.1 2706183 2706440 D hypothetical protein 2706183..2706440 Nitrobacter winogradskyi Nb-255 3676798 YP_319090.1 CDS Nwi_2485 NC_007406.1 2707057 2708709 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(2707057..2708709) Nitrobacter winogradskyi Nb-255 3676799 YP_319091.1 CDS Nwi_2486 NC_007406.1 2709108 2709311 D hypothetical protein 2709108..2709311 Nitrobacter winogradskyi Nb-255 3676800 YP_319092.1 CDS Nwi_2487 NC_007406.1 2709365 2709622 D hypothetical protein 2709365..2709622 Nitrobacter winogradskyi Nb-255 3676801 YP_319093.1 CDS Nwi_2488 NC_007406.1 2709760 2710875 R ErfK/YbiS/YcfS/YnhG protein complement(2709760..2710875) Nitrobacter winogradskyi Nb-255 3676802 YP_319094.1 CDS Nwi_2489 NC_007406.1 2711208 2711987 D hypothetical protein 2711208..2711987 Nitrobacter winogradskyi Nb-255 3676803 YP_319095.1 CDS Nwi_2490 NC_007406.1 2712114 2712992 R rhodanese-related sulfurtransferase complement(2712114..2712992) Nitrobacter winogradskyi Nb-255 3676804 YP_319096.1 CDS Nwi_2491 NC_007406.1 2713178 2713771 R N-acetyltransferase complement(2713178..2713771) Nitrobacter winogradskyi Nb-255 3676805 YP_319097.1 CDS Nwi_2492 NC_007406.1 2714009 2714377 R hypothetical protein complement(2714009..2714377) Nitrobacter winogradskyi Nb-255 3676806 YP_319098.1 CDS Nwi_2493 NC_007406.1 2714553 2715365 D hypothetical protein 2714553..2715365 Nitrobacter winogradskyi Nb-255 3676807 YP_319099.1 CDS Nwi_2494 NC_007406.1 2715422 2715658 D hypothetical protein 2715422..2715658 Nitrobacter winogradskyi Nb-255 3676808 YP_319100.1 CDS Nwi_2495 NC_007406.1 2715729 2718827 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2715729..2718827 Nitrobacter winogradskyi Nb-255 3676809 YP_319101.1 CDS Nwi_2496 NC_007406.1 2719110 2719445 D hypothetical protein 2719110..2719445 Nitrobacter winogradskyi Nb-255 3676810 YP_319102.1 CDS Nwi_2497 NC_007406.1 2719704 2720594 D hypothetical protein 2719704..2720594 Nitrobacter winogradskyi Nb-255 3676811 YP_319103.1 CDS Nwi_2498 NC_007406.1 2720808 2721176 R transposase, IS4 complement(2720808..2721176) Nitrobacter winogradskyi Nb-255 3676812 YP_319104.1 CDS Nwi_2499 NC_007406.1 2721191 2721589 R transposase complement(2721191..2721589) Nitrobacter winogradskyi Nb-255 3676813 YP_319105.1 CDS Nwi_2500 NC_007406.1 2721839 2722297 D hypothetical protein 2721839..2722297 Nitrobacter winogradskyi Nb-255 3675307 YP_319106.1 CDS Nwi_2501 NC_007406.1 2722502 2723497 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(2722502..2723497) Nitrobacter winogradskyi Nb-255 3675308 YP_319107.1 CDS Nwi_2502 NC_007406.1 2723630 2724400 R hypothetical protein complement(2723630..2724400) Nitrobacter winogradskyi Nb-255 3675309 YP_319108.1 CDS Nwi_2503 NC_007406.1 2724397 2725569 R hypothetical protein complement(2724397..2725569) Nitrobacter winogradskyi Nb-255 3675310 YP_319109.1 CDS Nwi_2504 NC_007406.1 2725517 2726392 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2725517..2726392) Nitrobacter winogradskyi Nb-255 3675311 YP_319110.1 CDS Nwi_2505 NC_007406.1 2726715 2726972 D hypothetical protein 2726715..2726972 Nitrobacter winogradskyi Nb-255 3675312 YP_319111.1 CDS Nwi_2506 NC_007406.1 2726994 2727212 R hypothetical protein complement(2726994..2727212) Nitrobacter winogradskyi Nb-255 3675313 YP_319112.1 CDS Nwi_2507 NC_007406.1 2727451 2727936 R acyl dehydratase MaoC complement(2727451..2727936) Nitrobacter winogradskyi Nb-255 3675314 YP_319113.1 CDS Nwi_2508 NC_007406.1 2727941 2728402 R acyl dehydratase MaoC complement(2727941..2728402) Nitrobacter winogradskyi Nb-255 3675315 YP_319114.1 CDS Nwi_2509 NC_007406.1 2728575 2728871 D hypothetical protein 2728575..2728871 Nitrobacter winogradskyi Nb-255 3675316 YP_319115.1 CDS Nwi_2510 NC_007406.1 2728983 2730080 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2728983..2730080) Nitrobacter winogradskyi Nb-255 3675317 YP_319116.1 CDS Nwi_2511 NC_007406.1 2730280 2730888 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(2730280..2730888) Nitrobacter winogradskyi Nb-255 3675318 YP_319117.1 CDS Nwi_2512 NC_007406.1 2730904 2731590 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(2730904..2731590) Nitrobacter winogradskyi Nb-255 3675319 YP_319118.1 CDS Nwi_2513 NC_007406.1 2732214 2732714 D hypothetical protein 2732214..2732714 Nitrobacter winogradskyi Nb-255 3675320 YP_319119.1 CDS Nwi_2514 NC_007406.1 2732723 2733628 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 2732723..2733628 Nitrobacter winogradskyi Nb-255 3675321 YP_319120.1 CDS Nwi_2515 NC_007406.1 2733741 2735249 D aldehyde dehydrogenase 2733741..2735249 Nitrobacter winogradskyi Nb-255 3675322 YP_319121.1 CDS Nwi_2516 NC_007406.1 2735458 2736726 R ornithine aminotransferase complement(2735458..2736726) Nitrobacter winogradskyi Nb-255 3675323 YP_319122.1 CDS Nwi_2517 NC_007406.1 2736917 2738317 R Signal transduction histidine kinase complement(2736917..2738317) Nitrobacter winogradskyi Nb-255 3675324 YP_319123.1 CDS Nwi_2518 NC_007406.1 2738314 2739054 R two-component transcriptional regulator complement(2738314..2739054) Nitrobacter winogradskyi Nb-255 3675325 YP_319124.1 CDS Nwi_2519 NC_007406.1 2739051 2739560 R marR family transcriptional regulator complement(2739051..2739560) Nitrobacter winogradskyi Nb-255 3675473 YP_319125.1 CDS Nwi_2520 NC_007406.1 2739892 2741004 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2739892..2741004 Nitrobacter winogradskyi Nb-255 3675474 YP_319126.1 CDS Nwi_2521 NC_007406.1 2741044 2742516 R multi anti extrusion protein MatE complement(2741044..2742516) Nitrobacter winogradskyi Nb-255 3675475 YP_319127.1 CDS Nwi_2522 NC_007406.1 2742681 2743703 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(2742681..2743703) Nitrobacter winogradskyi Nb-255 3674675 YP_319128.1 CDS Nwi_2523 NC_007406.1 2743703 2744170 R molybdopterin biosynthesis MoaE complement(2743703..2744170) Nitrobacter winogradskyi Nb-255 3674676 YP_319129.1 CDS Nwi_2524 NC_007406.1 2744193 2744444 R molybdopterin converting factor subunit 1 complement(2744193..2744444) Nitrobacter winogradskyi Nb-255 3676300 YP_319130.1 CDS Nwi_2525 NC_007406.1 2744441 2745058 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(2744441..2745058) Nitrobacter winogradskyi Nb-255 3676827 YP_319131.1 CDS uvrC NC_007406.1 2745191 2747191 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2745191..2747191) Nitrobacter winogradskyi Nb-255 3676828 YP_319132.1 CDS Nwi_2527 NC_007406.1 2747653 2748273 D outer-membrane immunogenic protein 2747653..2748273 Nitrobacter winogradskyi Nb-255 3676829 YP_319133.1 CDS Nwi_2528 NC_007406.1 2748374 2749228 R hypothetical protein complement(2748374..2749228) Nitrobacter winogradskyi Nb-255 3676830 YP_319134.1 CDS Nwi_2529 NC_007406.1 2749326 2750015 R ribonuclease T2 complement(2749326..2750015) Nitrobacter winogradskyi Nb-255 3676831 YP_319135.1 CDS Nwi_2530 NC_007406.1 2750357 2750812 R hypothetical protein complement(2750357..2750812) Nitrobacter winogradskyi Nb-255 3676832 YP_319136.1 CDS Nwi_2531 NC_007406.1 2750979 2751269 D hypothetical protein 2750979..2751269 Nitrobacter winogradskyi Nb-255 3676833 YP_319137.1 CDS Nwi_2532 NC_007406.1 2751296 2751826 D hypothetical protein 2751296..2751826 Nitrobacter winogradskyi Nb-255 3676834 YP_319138.1 CDS hisS NC_007406.1 2751884 2753527 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2751884..2753527) Nitrobacter winogradskyi Nb-255 3676835 YP_319139.1 CDS Nwi_2534 NC_007406.1 2753685 2754029 D hypothetical protein 2753685..2754029 Nitrobacter winogradskyi Nb-255 3676836 YP_319140.1 CDS Nwi_2535 NC_007406.1 2754061 2755725 R hypothetical protein complement(2754061..2755725) Nitrobacter winogradskyi Nb-255 3676837 YP_319141.1 CDS Nwi_2536 NC_007406.1 2755737 2756177 R TadE-like protein complement(2755737..2756177) Nitrobacter winogradskyi Nb-255 3676838 YP_319142.1 CDS Nwi_2537 NC_007406.1 2756655 2757992 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 2756655..2757992 Nitrobacter winogradskyi Nb-255 3676839 YP_319143.1 CDS Nwi_2538 NC_007406.1 2758112 2759551 D diguanylate phophodiesterase 2758112..2759551 Nitrobacter winogradskyi Nb-255 3676840 YP_319144.1 CDS Nwi_2539 NC_007406.1 2759567 2760421 D HAD family hydrolase 2759567..2760421 Nitrobacter winogradskyi Nb-255 3675254 YP_319145.1 CDS Nwi_2540 NC_007406.1 2760479 2760874 R response regulator receiver complement(2760479..2760874) Nitrobacter winogradskyi Nb-255 3675255 YP_319146.1 CDS Nwi_2541 NC_007406.1 2761142 2762125 D riboflavin kinase/FAD synthetase 2761142..2762125 Nitrobacter winogradskyi Nb-255 3675256 YP_319147.1 CDS ileS NC_007406.1 2762248 2765247 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2762248..2765247 Nitrobacter winogradskyi Nb-255 3675257 YP_319148.1 CDS Nwi_2543 NC_007406.1 2765244 2765741 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2765244..2765741 Nitrobacter winogradskyi Nb-255 3675258 YP_319149.1 CDS Nwi_2544 NC_007406.1 2765820 2766539 D hypothetical protein 2765820..2766539 Nitrobacter winogradskyi Nb-255 3675259 YP_319150.1 CDS Nwi_2545 NC_007406.1 2767123 2768517 D peptidase M16 2767123..2768517 Nitrobacter winogradskyi Nb-255 3675260 YP_319151.1 CDS Nwi_2546 NC_007406.1 2768514 2769908 D peptidase M16 2768514..2769908 Nitrobacter winogradskyi Nb-255 3675261 YP_319152.1 CDS Nwi_2547 NC_007406.1 2770154 2770573 D peptidyl-tRNA hydrolase domain-containing protein 2770154..2770573 Nitrobacter winogradskyi Nb-255 3675262 YP_319153.1 CDS mutL NC_007406.1 2770877 2772688 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 2770877..2772688 Nitrobacter winogradskyi Nb-255 3675263 YP_319154.1 CDS Nwi_2549 NC_007406.1 2772792 2773346 R hypothetical protein complement(2772792..2773346) Nitrobacter winogradskyi Nb-255 3675264 YP_319155.1 CDS Nwi_2550 NC_007406.1 2773349 2775391 R pseudouridine synthase complement(2773349..2775391) Nitrobacter winogradskyi Nb-255 3675265 YP_319156.1 CDS Nwi_2551 NC_007406.1 2775668 2776114 D cytidine/deoxycytidylate deaminase 2775668..2776114 Nitrobacter winogradskyi Nb-255 3675266 YP_319157.1 CDS Nwi_2552 NC_007406.1 2776124 2777404 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(2776124..2777404) Nitrobacter winogradskyi Nb-255 3675267 YP_319158.1 CDS xseA NC_007406.1 2777486 2779111 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2777486..2779111 Nitrobacter winogradskyi Nb-255 3675268 YP_319159.1 CDS Nwi_2554 NC_007406.1 2779133 2779492 D hypothetical protein 2779133..2779492 Nitrobacter winogradskyi Nb-255 3675269 YP_319160.1 CDS lpxK NC_007406.1 2779510 2780523 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(2779510..2780523) Nitrobacter winogradskyi Nb-255 3675270 YP_319161.1 CDS Nwi_2556 NC_007406.1 2780516 2781808 R 3-deoxy-D-manno-octulosonic-acid transferase complement(2780516..2781808) Nitrobacter winogradskyi Nb-255 3675271 YP_319162.1 CDS Nwi_2557 NC_007406.1 2781813 2782547 R hypothetical protein complement(2781813..2782547) Nitrobacter winogradskyi Nb-255 3675272 YP_319163.1 CDS Nwi_2558 NC_007406.1 2782544 2782795 R hypothetical protein complement(2782544..2782795) Nitrobacter winogradskyi Nb-255 3675216 YP_319164.1 CDS Nwi_2559 NC_007406.1 2782857 2783684 R inositol monophosphatase complement(2782857..2783684) Nitrobacter winogradskyi Nb-255 3675217 YP_319165.1 CDS Nwi_2560 NC_007406.1 2783671 2785110 R C69 family peptidase complement(2783671..2785110) Nitrobacter winogradskyi Nb-255 3675218 YP_319166.1 CDS Nwi_2561 NC_007406.1 2785344 2785865 D hypothetical protein 2785344..2785865 Nitrobacter winogradskyi Nb-255 3675219 YP_319167.1 CDS ubiA NC_007406.1 2785932 2786855 R UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase complement(2785932..2786855) Nitrobacter winogradskyi Nb-255 3675220 YP_319168.1 CDS Nwi_2563 NC_007406.1 2786866 2787636 R hypothetical protein complement(2786866..2787636) Nitrobacter winogradskyi Nb-255 3675221 YP_319169.1 CDS Nwi_2564 NC_007406.1 2787924 2788697 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2787924..2788697 Nitrobacter winogradskyi Nb-255 3675222 YP_319170.1 CDS hisZ NC_007406.1 2788825 2789997 D May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 2788825..2789997 Nitrobacter winogradskyi Nb-255 3675223 YP_319171.1 CDS hisG NC_007406.1 2789994 2790971 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 2789994..2790971 Nitrobacter winogradskyi Nb-255 3675224 YP_319172.1 CDS Nwi_2567 NC_007406.1 2791054 2792100 D glycosyl transferase family protein 2791054..2792100 Nitrobacter winogradskyi Nb-255 3675225 YP_319173.1 CDS Nwi_2568 NC_007406.1 2792097 2792972 D protein YebG 2792097..2792972 Nitrobacter winogradskyi Nb-255 3675226 YP_319174.1 CDS Nwi_2569 NC_007406.1 2793088 2793885 D hypothetical protein 2793088..2793885 Nitrobacter winogradskyi Nb-255 3675227 YP_319175.1 CDS Nwi_2570 NC_007406.1 2793995 2794846 R ErfK/YbiS/YcfS/YnhG protein complement(2793995..2794846) Nitrobacter winogradskyi Nb-255 3675228 YP_319176.1 CDS Nwi_2571 NC_007406.1 2795091 2795870 D hypothetical protein 2795091..2795870 Nitrobacter winogradskyi Nb-255 3675229 YP_319177.1 CDS Nwi_2572 NC_007406.1 2795911 2796426 R hypothetical protein complement(2795911..2796426) Nitrobacter winogradskyi Nb-255 3675230 YP_319178.1 CDS groES NC_007406.1 2796735 2797031 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2796735..2797031 Nitrobacter winogradskyi Nb-255 3675231 YP_319179.1 CDS groEL NC_007406.1 2797175 2798821 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; the rhizobia have multiple copies of the groEL gene which are active under different environmental conditions; the S. meliloti protein in this cluster is not associated with a groES gene; molecular chaperone GroEL 2797175..2798821 Nitrobacter winogradskyi Nb-255 3675232 YP_319180.1 CDS Nwi_2575 NC_007406.1 2798927 2800126 D hypothetical protein 2798927..2800126 Nitrobacter winogradskyi Nb-255 3675233 YP_319181.1 CDS Nwi_2576 NC_007406.1 2800259 2801221 D hypothetical protein 2800259..2801221 Nitrobacter winogradskyi Nb-255 3675234 YP_319182.1 CDS Nwi_2577 NC_007406.1 2801313 2801720 R hypothetical protein complement(2801313..2801720) Nitrobacter winogradskyi Nb-255 3675235 YP_319183.1 CDS Nwi_2578 NC_007406.1 2802070 2802528 R hypothetical protein complement(2802070..2802528) Nitrobacter winogradskyi Nb-255 3675612 YP_319184.1 CDS Nwi_2579 NC_007406.1 2802564 2803877 R 4Fe-4S ferredoxin complement(2802564..2803877) Nitrobacter winogradskyi Nb-255 3675613 YP_319185.1 CDS Nwi_2580 NC_007406.1 2803874 2805124 R FAD linked oxidase complement(2803874..2805124) Nitrobacter winogradskyi Nb-255 3675614 YP_319186.1 CDS Nwi_2581 NC_007406.1 2805170 2806663 R FAD linked oxidase complement(2805170..2806663) Nitrobacter winogradskyi Nb-255 3675615 YP_319187.1 CDS Nwi_2582 NC_007406.1 2807013 2807414 D cytochrome c, class I 2807013..2807414 Nitrobacter winogradskyi Nb-255 3675616 YP_319188.1 CDS Nwi_2583 NC_007406.1 2807424 2808104 R TetR family transcriptional regulator complement(2807424..2808104) Nitrobacter winogradskyi Nb-255 3675617 YP_319189.1 CDS Nwi_2584 NC_007406.1 2808382 2808537 R hypothetical protein complement(2808382..2808537) Nitrobacter winogradskyi Nb-255 3675618 YP_319190.1 CDS Nwi_2585 NC_007406.1 2808796 2809173 D hypothetical protein 2808796..2809173 Nitrobacter winogradskyi Nb-255 3675619 YP_319191.1 CDS glyS NC_007406.1 2809191 2811374 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(2809191..2811374) Nitrobacter winogradskyi Nb-255 3675620 YP_319192.1 CDS glyQ NC_007406.1 2811378 2812322 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(2811378..2812322) Nitrobacter winogradskyi Nb-255 3675621 YP_319193.1 CDS Nwi_2588 NC_007406.1 2812515 2812703 R hypothetical protein complement(2812515..2812703) Nitrobacter winogradskyi Nb-255 3675622 YP_319194.1 CDS Nwi_2589 NC_007406.1 2812821 2813699 R peptidase S49 complement(2812821..2813699) Nitrobacter winogradskyi Nb-255 3675623 YP_319195.1 CDS Nwi_2590 NC_007406.1 2813881 2814666 R methyltransferase small complement(2813881..2814666) Nitrobacter winogradskyi Nb-255 3675019 YP_319196.1 CDS Nwi_2591 NC_007406.1 2814647 2814901 R hypothetical protein complement(2814647..2814901) Nitrobacter winogradskyi Nb-255 3675020 YP_319197.1 CDS Nwi_2592 NC_007406.1 2815046 2816056 D polyprenyl synthetase 2815046..2816056 Nitrobacter winogradskyi Nb-255 3675021 YP_319198.1 CDS Nwi_2593 NC_007406.1 2816111 2817037 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(2816111..2817037) Nitrobacter winogradskyi Nb-255 3675022 YP_319199.1 CDS Nwi_2594 NC_007406.1 2817155 2819008 R hypothetical protein complement(2817155..2819008) Nitrobacter winogradskyi Nb-255 3675023 YP_319200.1 CDS Nwi_2595 NC_007406.1 2819212 2820873 R FAD dependent oxidoreductase complement(2819212..2820873) Nitrobacter winogradskyi Nb-255 3675024 YP_319201.1 CDS Nwi_2596 NC_007406.1 2821077 2821982 D phage SPO1 DNA polymerase-like protein 2821077..2821982 Nitrobacter winogradskyi Nb-255 3675025 YP_319202.1 CDS Nwi_2597 NC_007406.1 2821992 2823560 R hypothetical protein complement(2821992..2823560) Nitrobacter winogradskyi Nb-255 3675942 YP_319203.1 CDS rnhB NC_007406.1 2823769 2824545 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(2823769..2824545) Nitrobacter winogradskyi Nb-255 3675943 YP_319204.1 CDS Nwi_2599 NC_007406.1 2824652 2824981 D small multidrug resistance protein 2824652..2824981 Nitrobacter winogradskyi Nb-255 3675944 YP_319205.1 CDS Nwi_2600 NC_007406.1 2825032 2826192 R DNA repair photolyase complement(2825032..2826192) Nitrobacter winogradskyi Nb-255 3675945 YP_319206.1 CDS Nwi_2601 NC_007406.1 2826259 2826822 R molybdopterin biosynthesis protein B complement(2826259..2826822) Nitrobacter winogradskyi Nb-255 3675946 YP_319207.1 CDS Nwi_2602 NC_007406.1 2826836 2827762 R hypothetical protein complement(2826836..2827762) Nitrobacter winogradskyi Nb-255 3675947 YP_319208.1 CDS Nwi_2603 NC_007406.1 2828342 2829472 D DNA methylase N-4/N-6 2828342..2829472 Nitrobacter winogradskyi Nb-255 3675948 YP_319209.1 CDS Nwi_2604 NC_007406.1 2829832 2830515 D glutathione S-transferase 2829832..2830515 Nitrobacter winogradskyi Nb-255 3674927 YP_319210.1 CDS Nwi_2605 NC_007406.1 2830554 2831801 R A/G-specific adenine glycosylase complement(2830554..2831801) Nitrobacter winogradskyi Nb-255 3675059 YP_319211.1 CDS Nwi_2606 NC_007406.1 2831840 2832469 D hypothetical protein 2831840..2832469 Nitrobacter winogradskyi Nb-255 3675060 YP_319212.1 CDS Nwi_2607 NC_007406.1 2832580 2833242 D protein-disulfide isomerase 2832580..2833242 Nitrobacter winogradskyi Nb-255 3675061 YP_319213.1 CDS Nwi_2608 NC_007406.1 2833474 2836980 D chromosome segregation protein SMC 2833474..2836980 Nitrobacter winogradskyi Nb-255 3675062 YP_319214.1 CDS Nwi_2609 NC_007406.1 2837017 2838063 D hypothetical protein 2837017..2838063 Nitrobacter winogradskyi Nb-255 3675063 YP_319215.1 CDS Nwi_2610 NC_007406.1 2838075 2838503 R hypothetical protein complement(2838075..2838503) Nitrobacter winogradskyi Nb-255 3675064 YP_319216.1 CDS Nwi_2611 NC_007406.1 2838688 2839248 D hypothetical protein 2838688..2839248 Nitrobacter winogradskyi Nb-255 3675065 YP_319217.1 CDS Nwi_2612 NC_007406.1 2839351 2840502 D peptidase M48, Ste24p 2839351..2840502 Nitrobacter winogradskyi Nb-255 3675066 YP_319218.1 CDS Nwi_2613 NC_007406.1 2840551 2841090 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2840551..2841090) Nitrobacter winogradskyi Nb-255 3675067 YP_319219.1 CDS Nwi_2614 NC_007406.1 2841237 2843420 R trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; anthranilate synthase complement(2841237..2843420) Nitrobacter winogradskyi Nb-255 3675068 YP_319220.1 CDS Nwi_2615 NC_007406.1 2843615 2844358 D hypothetical protein 2843615..2844358 Nitrobacter winogradskyi Nb-255 3675069 YP_319221.1 CDS Nwi_2616 NC_007406.1 2844592 2846655 R cytochrome c1 complement(2844592..2846655) Nitrobacter winogradskyi Nb-255 3675070 YP_319222.1 CDS Nwi_2617 NC_007406.1 2846707 2847234 R ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(2846707..2847234) Nitrobacter winogradskyi Nb-255 3674427 YP_319223.1 CDS Nwi_2618 NC_007406.1 2847437 2847907 D tRNA/rRNA methyltransferase SpoU 2847437..2847907 Nitrobacter winogradskyi Nb-255 3674428 YP_319224.1 CDS Nwi_2619 NC_007406.1 2847904 2848536 D hypothetical protein 2847904..2848536 Nitrobacter winogradskyi Nb-255 3674429 YP_319225.1 CDS Nwi_2620 NC_007406.1 2848619 2848990 D 6-pyruvoyl tetrahydrobiopterin synthase 2848619..2848990 Nitrobacter winogradskyi Nb-255 3674430 YP_319226.1 CDS Nwi_2621 NC_007406.1 2849027 2849929 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2849027..2849929 Nitrobacter winogradskyi Nb-255 3674431 YP_319227.1 CDS Nwi_2622 NC_007406.1 2849949 2851205 R polynucleotide adenylyltransferase complement(2849949..2851205) Nitrobacter winogradskyi Nb-255 3674432 YP_319228.1 CDS Nwi_2623 NC_007406.1 2851202 2851465 R hypothetical protein complement(2851202..2851465) Nitrobacter winogradskyi Nb-255 3674433 YP_319229.1 CDS Nwi_2624 NC_007406.1 2851462 2852127 R NUDIX hydrolase complement(2851462..2852127) Nitrobacter winogradskyi Nb-255 3674434 YP_319230.1 CDS Nwi_2625 NC_007406.1 2852136 2852741 R hypothetical protein complement(2852136..2852741) Nitrobacter winogradskyi Nb-255 3674435 YP_319231.1 CDS Nwi_2626 NC_007406.1 2852988 2854001 D ATPase 2852988..2854001 Nitrobacter winogradskyi Nb-255 3674436 YP_319232.1 CDS Nwi_2627 NC_007406.1 2854001 2854942 D hypothetical protein 2854001..2854942 Nitrobacter winogradskyi Nb-255 3674437 YP_319233.1 CDS Nwi_2628 NC_007406.1 2854939 2857752 D hypothetical protein 2854939..2857752 Nitrobacter winogradskyi Nb-255 3674438 YP_319234.1 CDS Nwi_2629 NC_007406.1 2857762 2859825 D hypothetical protein 2857762..2859825 Nitrobacter winogradskyi Nb-255 3674439 YP_319235.1 CDS Nwi_2630 NC_007406.1 2859996 2860421 D hypothetical protein 2859996..2860421 Nitrobacter winogradskyi Nb-255 3674440 YP_319236.1 CDS Nwi_2631 NC_007406.1 2860548 2862947 D TonB-dependent receptor 2860548..2862947 Nitrobacter winogradskyi Nb-255 3674441 YP_319237.1 CDS Nwi_2632 NC_007406.1 2863133 2863678 R N-acetyltransferase complement(2863133..2863678) Nitrobacter winogradskyi Nb-255 3674442 YP_319238.1 CDS Nwi_2633 NC_007406.1 2863740 2864228 R NUDIX hydrolase complement(2863740..2864228) Nitrobacter winogradskyi Nb-255 3674443 YP_319239.1 CDS Nwi_2634 NC_007406.1 2864455 2865360 D metallophosphoesterase 2864455..2865360 Nitrobacter winogradskyi Nb-255 3674444 YP_319240.1 CDS Nwi_2635 NC_007406.1 2865474 2865827 R hypothetical protein complement(2865474..2865827) Nitrobacter winogradskyi Nb-255 3674445 YP_319241.1 CDS Nwi_2636 NC_007406.1 2866268 2866765 D hypothetical protein 2866268..2866765 Nitrobacter winogradskyi Nb-255 3677212 YP_319242.1 CDS Nwi_2637 NC_007406.1 2866750 2867019 D hypothetical protein 2866750..2867019 Nitrobacter winogradskyi Nb-255 3676306 YP_319243.1 CDS Nwi_2638 NC_007406.1 2867160 2867447 R hypothetical protein complement(2867160..2867447) Nitrobacter winogradskyi Nb-255 3676307 YP_319244.1 CDS Nwi_2639 NC_007406.1 2867444 2867920 R glutathione peroxidase complement(2867444..2867920) Nitrobacter winogradskyi Nb-255 3676308 YP_319245.1 CDS Nwi_2640 NC_007406.1 2867970 2868227 R hypothetical protein complement(2867970..2868227) Nitrobacter winogradskyi Nb-255 3676309 YP_319246.1 CDS Nwi_2641 NC_007406.1 2868473 2871370 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate; bifunctional transaldolase/phosoglucose isomerase 2868473..2871370 Nitrobacter winogradskyi Nb-255 3676310 YP_319247.1 CDS Nwi_2642 NC_007406.1 2871632 2872648 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 2871632..2872648 Nitrobacter winogradskyi Nb-255 3676311 YP_319248.1 CDS Nwi_2643 NC_007406.1 2872645 2874159 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2872645..2874159 Nitrobacter winogradskyi Nb-255 3676312 YP_319249.1 CDS Nwi_2644 NC_007406.1 2874141 2874896 D 6-phosphogluconolactonase 2874141..2874896 Nitrobacter winogradskyi Nb-255 3676313 YP_319250.1 CDS Nwi_2645 NC_007406.1 2874893 2875411 D carbohydrate kinase 2874893..2875411 Nitrobacter winogradskyi Nb-255 3676314 YP_319251.1 CDS Nwi_2646 NC_007406.1 2875634 2877523 R glycoside hydrolase 15-like protein complement(2875634..2877523) Nitrobacter winogradskyi Nb-255 3676315 YP_319252.1 CDS Nwi_2647 NC_007406.1 2877682 2879658 R PAS sensor diguanylate cyclase/phophodiesterase complement(2877682..2879658) Nitrobacter winogradskyi Nb-255 3676316 YP_319253.1 CDS Nwi_2648 NC_007406.1 2880044 2881015 R multicopper oxidase complement(2880044..2881015) Nitrobacter winogradskyi Nb-255 3676317 YP_319254.1 CDS Nwi_2649 NC_007406.1 2881041 2881397 R cytochrome c, class IC complement(2881041..2881397) Nitrobacter winogradskyi Nb-255 3676318 YP_319255.1 CDS Nwi_2650 NC_007406.1 2881397 2882074 R cytochrome c, class I complement(2881397..2882074) Nitrobacter winogradskyi Nb-255 3676319 YP_319256.1 CDS Nwi_2651 NC_007406.1 2882098 2883174 R multicopper oxidase3 complement(2882098..2883174) Nitrobacter winogradskyi Nb-255 3676320 YP_319257.1 CDS Nwi_2652 NC_007406.1 2883484 2884134 R cytochrome c biogenesis factor complement(2883484..2884134) Nitrobacter winogradskyi Nb-255 3676321 YP_319258.1 CDS Nwi_2653 NC_007406.1 2884371 2884799 R hypothetical protein complement(2884371..2884799) Nitrobacter winogradskyi Nb-255 3676322 YP_319259.1 CDS Nwi_2654 NC_007406.1 2885067 2888009 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 2885067..2888009 Nitrobacter winogradskyi Nb-255 3676323 YP_319260.1 CDS Nwi_2655 NC_007406.1 2888009 2888347 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 2888009..2888347 Nitrobacter winogradskyi Nb-255 3676324 YP_319261.1 CDS Nwi_2656 NC_007406.1 2888350 2889957 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 2888350..2889957 Nitrobacter winogradskyi Nb-255 3675109 YP_319262.1 CDS Nwi_2657 NC_007406.1 2889954 2890442 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 2889954..2890442 Nitrobacter winogradskyi Nb-255 3675110 YP_319263.1 CDS phaF NC_007406.1 2890439 2890717 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit F 2890439..2890717 Nitrobacter winogradskyi Nb-255 3675111 YP_319264.1 CDS Nwi_2659 NC_007406.1 2890714 2891073 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit G 2890714..2891073 Nitrobacter winogradskyi Nb-255 3675112 YP_319265.1 CDS Nwi_2660 NC_007406.1 2891179 2891583 R hypothetical protein complement(2891179..2891583) Nitrobacter winogradskyi Nb-255 3675113 YP_319266.1 CDS Nwi_2661 NC_007406.1 2891617 2893728 R multicopper oxidase complement(2891617..2893728) Nitrobacter winogradskyi Nb-255 3675114 YP_319267.1 CDS Nwi_2662 NC_007406.1 2894397 2895257 R short-chain dehydrogenase/reductase SDR complement(2894397..2895257) Nitrobacter winogradskyi Nb-255 3675115 YP_319268.1 CDS Nwi_2663 NC_007406.1 2895706 2896314 D isochorismatase hydrolase 2895706..2896314 Nitrobacter winogradskyi Nb-255 3675116 YP_319269.1 CDS Nwi_2664 NC_007406.1 2896380 2896877 D hypothetical protein 2896380..2896877 Nitrobacter winogradskyi Nb-255 3675117 YP_319270.1 CDS Nwi_2665 NC_007406.1 2897131 2898111 R Fis family transcriptional regulator complement(2897131..2898111) Nitrobacter winogradskyi Nb-255 3675118 YP_319271.1 CDS Nwi_2666 NC_007406.1 2898108 2898482 R transposase IS3/IS911 complement(2898108..2898482) Nitrobacter winogradskyi Nb-255 3675119 YP_319272.1 CDS Nwi_2667 NC_007406.1 2899244 2899522 R hypothetical protein complement(2899244..2899522) Nitrobacter winogradskyi Nb-255 3675120 YP_319273.1 CDS Nwi_2668 NC_007406.1 2899607 2900695 R hypothetical protein complement(2899607..2900695) Nitrobacter winogradskyi Nb-255 3675121 YP_319274.1 CDS Nwi_2669 NC_007406.1 2900685 2903147 R hypothetical protein complement(2900685..2903147) Nitrobacter winogradskyi Nb-255 3675122 YP_319275.1 CDS Nwi_2670 NC_007406.1 2903144 2903854 R ABC transporter ATPase complement(2903144..2903854) Nitrobacter winogradskyi Nb-255 3675123 YP_319276.1 CDS Nwi_2671 NC_007406.1 2904115 2904657 R pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(2904115..2904657) Nitrobacter winogradskyi Nb-255 3675124 YP_319277.1 CDS Nwi_2672 NC_007406.1 2904779 2905114 D hypothetical protein 2904779..2905114 Nitrobacter winogradskyi Nb-255 3675125 YP_319278.1 CDS Nwi_2673 NC_007406.1 2905644 2906018 D transposase IS3/IS911 2905644..2906018 Nitrobacter winogradskyi Nb-255 3675126 YP_319279.1 CDS Nwi_2674 NC_007406.1 2906015 2906995 D Fis family transcriptional regulator 2906015..2906995 Nitrobacter winogradskyi Nb-255 3675127 YP_319280.1 CDS Nwi_2675 NC_007406.1 2907069 2908019 D glutathione S-transferase 2907069..2908019 Nitrobacter winogradskyi Nb-255 3675534 YP_319281.1 CDS Nwi_2676 NC_007406.1 2908173 2908826 R hypothetical protein complement(2908173..2908826) Nitrobacter winogradskyi Nb-255 3675535 YP_319282.1 CDS Nwi_2677 NC_007406.1 2909167 2909475 R hypothetical protein complement(2909167..2909475) Nitrobacter winogradskyi Nb-255 3675536 YP_319283.1 CDS Nwi_2678 NC_007406.1 2909616 2909804 R hypothetical protein complement(2909616..2909804) Nitrobacter winogradskyi Nb-255 3675537 YP_319284.1 CDS Nwi_2679 NC_007406.1 2909931 2910527 R hypothetical protein complement(2909931..2910527) Nitrobacter winogradskyi Nb-255 3675538 YP_319285.1 CDS Nwi_2680 NC_007406.1 2910790 2911851 D nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein 2910790..2911851 Nitrobacter winogradskyi Nb-255 3675539 YP_319286.1 CDS Nwi_2681 NC_007406.1 2912042 2913922 D responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA; cyclic beta-1,2-glucan ABc transporter 2912042..2913922 Nitrobacter winogradskyi Nb-255 3675540 YP_319287.1 CDS Nwi_2682 NC_007406.1 2914163 2915530 D peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 2914163..2915530 Nitrobacter winogradskyi Nb-255 3675541 YP_319288.1 CDS Nwi_2683 NC_007406.1 2916104 2916550 R universal stress protein UspA complement(2916104..2916550) Nitrobacter winogradskyi Nb-255 3675542 YP_319289.1 CDS Nwi_2684 NC_007406.1 2916966 2918669 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 2916966..2918669 Nitrobacter winogradskyi Nb-255 3675543 YP_319290.1 CDS Nwi_2685 NC_007406.1 2918704 2919318 D hypothetical protein 2918704..2919318 Nitrobacter winogradskyi Nb-255 3675544 YP_319291.1 CDS Nwi_2686 NC_007406.1 2919452 2919937 D alkyl hydroperoxide reductase 2919452..2919937 Nitrobacter winogradskyi Nb-255 3675545 YP_319292.1 CDS rnhA NC_007406.1 2920007 2920471 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(2920007..2920471) Nitrobacter winogradskyi Nb-255 3675546 YP_319293.1 CDS Nwi_2688 NC_007406.1 2920468 2921448 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase complement(2920468..2921448) Nitrobacter winogradskyi Nb-255 3675547 YP_319294.1 CDS ispH NC_007406.1 2921580 2922569 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(2921580..2922569) Nitrobacter winogradskyi Nb-255 3675548 YP_319295.1 CDS Nwi_2690 NC_007406.1 2922773 2923474 D hypothetical protein 2922773..2923474 Nitrobacter winogradskyi Nb-255 3675549 YP_319296.1 CDS Nwi_2691 NC_007406.1 2923614 2923970 R hypothetical protein complement(2923614..2923970) Nitrobacter winogradskyi Nb-255 3675550 YP_319297.1 CDS Nwi_2692 NC_007406.1 2924268 2925353 R class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase complement(2924268..2925353) Nitrobacter winogradskyi Nb-255 3675551 YP_319298.1 CDS Nwi_2693 NC_007406.1 2925475 2926347 R phosphoribulokinase/uridine kinase complement(2925475..2926347) Nitrobacter winogradskyi Nb-255 3675552 YP_319299.1 CDS Nwi_2694 NC_007406.1 2926360 2927397 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(2926360..2927397) Nitrobacter winogradskyi Nb-255 3675553 YP_319300.1 CDS Nwi_2695 NC_007406.1 2927526 2928464 D LysR family transcriptional regulator 2927526..2928464 Nitrobacter winogradskyi Nb-255 3675698 YP_319301.1 CDS Nwi_2696 NC_007406.1 2928685 2929671 D Sua5/YciO/YrdC/YwlC 2928685..2929671 Nitrobacter winogradskyi Nb-255 3675700 YP_319302.1 CDS Nwi_2697 NC_007406.1 2929671 2931113 D FAD linked oxidase 2929671..2931113 Nitrobacter winogradskyi Nb-255 3675701 YP_319303.1 CDS Nwi_2698 NC_007406.1 2931176 2931943 R hypothetical protein complement(2931176..2931943) Nitrobacter winogradskyi Nb-255 3675702 YP_319304.1 CDS Nwi_2699 NC_007406.1 2932007 2932519 D hypothetical protein 2932007..2932519 Nitrobacter winogradskyi Nb-255 3675703 YP_319305.1 CDS Nwi_2700 NC_007406.1 2932519 2932935 D NUDIX hydrolase 2932519..2932935 Nitrobacter winogradskyi Nb-255 3675704 YP_319306.1 CDS Nwi_2701 NC_007406.1 2932907 2933398 D hypothetical protein 2932907..2933398 Nitrobacter winogradskyi Nb-255 3675705 YP_319307.1 CDS Nwi_2702 NC_007406.1 2933590 2933856 D hypothetical protein 2933590..2933856 Nitrobacter winogradskyi Nb-255 3675706 YP_319308.1 CDS Nwi_2703 NC_007406.1 2934012 2935340 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(2934012..2935340) Nitrobacter winogradskyi Nb-255 3675707 YP_319309.1 CDS Nwi_2704 NC_007406.1 2935514 2936395 D glycine cleavage T protein (aminomethyl transferase) 2935514..2936395 Nitrobacter winogradskyi Nb-255 3675708 YP_319310.1 CDS Nwi_2705 NC_007406.1 2936392 2937018 D DNA-3-methyladenine glycosylase I 2936392..2937018 Nitrobacter winogradskyi Nb-255 3675709 YP_319311.1 CDS Nwi_2706 NC_007406.1 2937015 2937626 D metal dependent phosphohydrolase 2937015..2937626 Nitrobacter winogradskyi Nb-255 3675710 YP_319312.1 CDS Nwi_2707 NC_007406.1 2937705 2938301 R hypothetical protein complement(2937705..2938301) Nitrobacter winogradskyi Nb-255 3675711 YP_319313.1 CDS Nwi_2708 NC_007406.1 2938598 2939980 R cell wall hydrolase SleB complement(2938598..2939980) Nitrobacter winogradskyi Nb-255 3675712 YP_319314.1 CDS Nwi_2709 NC_007406.1 2940410 2943496 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(2940410..2943496) Nitrobacter winogradskyi Nb-255 3675713 YP_319315.1 CDS Nwi_2710 NC_007406.1 2943582 2945504 R peptidase M41, FtsH complement(2943582..2945504) Nitrobacter winogradskyi Nb-255 3674874 YP_319316.1 CDS Nwi_2711 NC_007406.1 2945691 2946806 R tRNA(Ile)-lysidine synthase complement(2945691..2946806) Nitrobacter winogradskyi Nb-255 3676849 YP_319317.1 CDS Nwi_2712 NC_007406.1 2946793 2947020 R hypothetical protein complement(2946793..2947020) Nitrobacter winogradskyi Nb-255 3674601 YP_319318.1 CDS Nwi_2713 NC_007406.1 2947158 2948075 R hypothetical protein complement(2947158..2948075) Nitrobacter winogradskyi Nb-255 3674602 YP_319319.1 CDS Nwi_2714 NC_007406.1 2948445 2948948 R OmpA/MotB protein complement(2948445..2948948) Nitrobacter winogradskyi Nb-255 3674603 YP_319320.1 CDS Nwi_2715 NC_007406.1 2949175 2949921 R hypothetical protein complement(2949175..2949921) Nitrobacter winogradskyi Nb-255 3674604 YP_319321.1 CDS Nwi_2716 NC_007406.1 2950321 2952657 R diguanylate cyclase/phophodiesterase complement(2950321..2952657) Nitrobacter winogradskyi Nb-255 3674605 YP_319322.1 CDS tolB NC_007406.1 2953068 2954420 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(2953068..2954420) Nitrobacter winogradskyi Nb-255 3674606 YP_319323.1 CDS Nwi_2718 NC_007406.1 2954463 2955515 R hypothetical protein complement(2954463..2955515) Nitrobacter winogradskyi Nb-255 3674607 YP_319324.1 CDS Nwi_2719 NC_007406.1 2955518 2955973 R biopolymer transport protein ExbD/TolR complement(2955518..2955973) Nitrobacter winogradskyi Nb-255 3674608 YP_319325.1 CDS Nwi_2720 NC_007406.1 2956005 2956718 R MotA/TolQ/ExbB proton channel complement(2956005..2956718) Nitrobacter winogradskyi Nb-255 3674609 YP_319326.1 CDS Nwi_2721 NC_007406.1 2957140 2957628 R hypothetical protein complement(2957140..2957628) Nitrobacter winogradskyi Nb-255 3674610 YP_319327.1 CDS Nwi_2722 NC_007406.1 2957895 2958608 R TetR family transcriptional regulator complement(2957895..2958608) Nitrobacter winogradskyi Nb-255 3674611 YP_319328.1 CDS Nwi_2723 NC_007406.1 2958773 2959234 R 4-hydroxybenzoyl-CoA thioesterase complement(2958773..2959234) Nitrobacter winogradskyi Nb-255 3674612 YP_319329.1 CDS ruvB NC_007406.1 2959231 2960277 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2959231..2960277) Nitrobacter winogradskyi Nb-255 3674613 YP_319330.1 CDS ruvA NC_007406.1 2960274 2960891 R plays an essential role in ATP-dependent branch migration of the Holliday junction; holliday junction DNA helicase RuvA complement(2960274..2960891) Nitrobacter winogradskyi Nb-255 3674614 YP_319331.1 CDS ruvC NC_007406.1 2960917 2961435 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; holliday junction resolvase complement(2960917..2961435) Nitrobacter winogradskyi Nb-255 3674615 YP_319332.1 CDS Nwi_2727 NC_007406.1 2961764 2962372 D hypothetical protein 2961764..2962372 Nitrobacter winogradskyi Nb-255 3674616 YP_319333.1 CDS Nwi_2728 NC_007406.1 2962436 2963806 R divalent cation transporter complement(2962436..2963806) Nitrobacter winogradskyi Nb-255 3674617 YP_319334.1 CDS Nwi_2729 NC_007406.1 2964112 2964858 R hypothetical protein complement(2964112..2964858) Nitrobacter winogradskyi Nb-255 3674618 YP_319335.1 CDS Nwi_2730 NC_007406.1 2965032 2965853 R hypothetical protein complement(2965032..2965853) Nitrobacter winogradskyi Nb-255 3674619 YP_319336.1 CDS Nwi_2731 NC_007406.1 2965857 2966444 R 5-formyltetrahydrofolate cyclo-ligase complement(2965857..2966444) Nitrobacter winogradskyi Nb-255 3676325 YP_319337.1 CDS Nwi_2732 NC_007406.1 2966934 2967317 R hypothetical protein complement(2966934..2967317) Nitrobacter winogradskyi Nb-255 3676326 YP_319338.1 CDS Nwi_2733 NC_007406.1 2967314 2967649 R hypothetical protein complement(2967314..2967649) Nitrobacter winogradskyi Nb-255 3676327 YP_319339.1 CDS Nwi_2734 NC_007406.1 2967933 2969918 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 2967933..2969918 Nitrobacter winogradskyi Nb-255 3676328 YP_319340.1 CDS Nwi_2735 NC_007406.1 2970244 2971251 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 2970244..2971251 Nitrobacter winogradskyi Nb-255 3676329 YP_319341.1 CDS pgk NC_007406.1 2971394 2972590 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2971394..2972590 Nitrobacter winogradskyi Nb-255 3676330 YP_319342.1 CDS Nwi_2737 NC_007406.1 2972714 2973745 D fructose-bisphosphate aldolase, class-I 2972714..2973745 Nitrobacter winogradskyi Nb-255 3676331 YP_319343.1 CDS Nwi_2738 NC_007406.1 2973912 2974613 D thiamine monophosphate synthase 2973912..2974613 Nitrobacter winogradskyi Nb-255 3676332 YP_319344.1 CDS Nwi_2739 NC_007406.1 2974610 2975650 D Sel1 repeat-containing protein 2974610..2975650 Nitrobacter winogradskyi Nb-255 3676333 YP_319345.1 CDS Nwi_2740 NC_007406.1 2975712 2976503 D inositol monophosphatase 2975712..2976503 Nitrobacter winogradskyi Nb-255 3676334 YP_319346.1 CDS Nwi_2741 NC_007406.1 2976673 2979834 R hydrophobe/amphiphile efflux protein complement(2976673..2979834) Nitrobacter winogradskyi Nb-255 3676335 YP_319347.1 CDS Nwi_2742 NC_007406.1 2979841 2981046 R secretion protein HlyD complement(2979841..2981046) Nitrobacter winogradskyi Nb-255 3676336 YP_319348.1 CDS Nwi_2743 NC_007406.1 2981511 2982587 D hypothetical protein 2981511..2982587 Nitrobacter winogradskyi Nb-255 3676337 YP_319349.1 CDS Nwi_2744 NC_007406.1 2982598 2983626 D hypothetical protein 2982598..2983626 Nitrobacter winogradskyi Nb-255 3676338 YP_319350.1 CDS Nwi_2745 NC_007406.1 2983846 2984295 D N-acetyltransferase 2983846..2984295 Nitrobacter winogradskyi Nb-255 3676339 YP_319351.1 CDS Nwi_2746 NC_007406.1 2984357 2986240 R ABC transporter ATP-binding protein/permease complement(2984357..2986240) Nitrobacter winogradskyi Nb-255 3676340 YP_319352.1 CDS rpmE NC_007406.1 2986389 2986616 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2986389..2986616 Nitrobacter winogradskyi Nb-255 3676341 YP_319353.1 CDS Nwi_2748 NC_007406.1 2986724 2987272 R hypothetical protein complement(2986724..2987272) Nitrobacter winogradskyi Nb-255 3676342 YP_319354.1 CDS Nwi_2749 NC_007406.1 2987862 2988050 R hypothetical protein complement(2987862..2988050) Nitrobacter winogradskyi Nb-255 3676343 YP_319355.1 CDS Nwi_2750 NC_007406.1 2988257 2989255 D zinc-containing alcohol dehydrogenase superfamily protein 2988257..2989255 Nitrobacter winogradskyi Nb-255 3676344 YP_319356.1 CDS Nwi_2751 NC_007406.1 2989347 2992229 D multi-sensor diguanylate cyclase/phophodiesterase 2989347..2992229 Nitrobacter winogradskyi Nb-255 3675090 YP_319357.1 CDS Nwi_2752 NC_007406.1 2992273 2992938 R hypothetical protein complement(2992273..2992938) Nitrobacter winogradskyi Nb-255 3675091 YP_319358.1 CDS Nwi_2753 NC_007406.1 2993099 2993941 D hypothetical protein 2993099..2993941 Nitrobacter winogradskyi Nb-255 3675092 YP_319359.1 CDS Nwi_2754 NC_007406.1 2994159 2995541 D polysaccharide biosynthesis protein 2994159..2995541 Nitrobacter winogradskyi Nb-255 3675093 YP_319360.1 CDS Nwi_2755 NC_007406.1 2995670 2996458 R 3-hydroxybutyrate dehydrogenase complement(2995670..2996458) Nitrobacter winogradskyi Nb-255 3675094 YP_319361.1 CDS Nwi_2756 NC_007406.1 2996594 2997103 R hypothetical protein complement(2996594..2997103) Nitrobacter winogradskyi Nb-255 3675095 YP_319362.1 CDS Nwi_2757 NC_007406.1 2997390 2998439 R sulfate transporter permease complement(2997390..2998439) Nitrobacter winogradskyi Nb-255 3675096 YP_319363.1 CDS Nwi_2758 NC_007406.1 2998429 2999298 R sulfate ABC transporter permease complement(2998429..2999298) Nitrobacter winogradskyi Nb-255 3675097 YP_319364.1 CDS Nwi_2759 NC_007406.1 2999310 3000146 R sulfate ABC transporter permease complement(2999310..3000146) Nitrobacter winogradskyi Nb-255 3675098 YP_319365.1 CDS Nwi_2760 NC_007406.1 3000177 3001166 R thiosulfate-binding protein complement(3000177..3001166) Nitrobacter winogradskyi Nb-255 3675099 YP_319366.1 CDS Nwi_2761 NC_007406.1 3001296 3002060 R catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase complement(3001296..3002060) Nitrobacter winogradskyi Nb-255 3675100 YP_319367.1 CDS Nwi_2762 NC_007406.1 3002057 3003487 R uroporphyrin-III C-methyltransferase complement(3002057..3003487) Nitrobacter winogradskyi Nb-255 3675101 YP_319368.1 CDS Nwi_2763 NC_007406.1 3003752 3004558 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3003752..3004558 Nitrobacter winogradskyi Nb-255 3675102 YP_319369.1 CDS Nwi_2764 NC_007406.1 3004593 3006518 D adenylylsulfate kinase 3004593..3006518 Nitrobacter winogradskyi Nb-255 3675103 YP_319370.1 CDS Nwi_2765 NC_007406.1 3006796 3009021 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 3006796..3009021 Nitrobacter winogradskyi Nb-255 3675104 YP_319371.1 CDS Nwi_2766 NC_007406.1 3009136 3009291 R hypothetical protein complement(3009136..3009291) Nitrobacter winogradskyi Nb-255 3675105 YP_319372.1 CDS Nwi_2767 NC_007406.1 3009640 3010008 D hypothetical protein 3009640..3010008 Nitrobacter winogradskyi Nb-255 3675106 YP_319373.1 CDS Nwi_2768 NC_007406.1 3010259 3010681 D hypothetical protein 3010259..3010681 Nitrobacter winogradskyi Nb-255 3675107 YP_319374.1 CDS Nwi_2769 NC_007406.1 3010700 3011083 R hypothetical protein complement(3010700..3011083) Nitrobacter winogradskyi Nb-255 3675108 YP_319375.1 CDS Nwi_2770 NC_007406.1 3011103 3011348 R hypothetical protein complement(3011103..3011348) Nitrobacter winogradskyi Nb-255 3675747 YP_319376.1 CDS Nwi_2771 NC_007406.1 3011323 3012129 R in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator complement(3011323..3012129) Nitrobacter winogradskyi Nb-255 3675748 YP_319377.1 CDS Nwi_2772 NC_007406.1 3012368 3012586 D hypothetical protein 3012368..3012586 Nitrobacter winogradskyi Nb-255 3675749 YP_319378.1 CDS Nwi_2773 NC_007406.1 3012586 3013128 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3012586..3013128 Nitrobacter winogradskyi Nb-255 3675750 YP_319379.1 CDS Nwi_2774 NC_007406.1 3013306 3014964 R HWE histidine kinase complement(3013306..3014964) Nitrobacter winogradskyi Nb-255 3675751 YP_319380.1 CDS Nwi_2775 NC_007406.1 3015393 3016661 R 2-methylthioadenine synthetase complement(3015393..3016661) Nitrobacter winogradskyi Nb-255 3675752 YP_319381.1 CDS dapF NC_007406.1 3016661 3017554 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3016661..3017554) Nitrobacter winogradskyi Nb-255 3675753 YP_319382.1 CDS Nwi_2777 NC_007406.1 3017811 3018539 D transcription activator, effector binding 3017811..3018539 Nitrobacter winogradskyi Nb-255 3675754 YP_319383.1 CDS Nwi_2778 NC_007406.1 3018536 3019258 D hypothetical protein 3018536..3019258 Nitrobacter winogradskyi Nb-255 3675755 YP_319384.1 CDS Nwi_2779 NC_007406.1 3019454 3021004 D signal recognition particle protein 3019454..3021004 Nitrobacter winogradskyi Nb-255 3675756 YP_319385.1 CDS rpsP NC_007406.1 3021083 3021415 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3021083..3021415 Nitrobacter winogradskyi Nb-255 3675757 YP_319386.1 CDS rimM NC_007406.1 3021428 3021949 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3021428..3021949 Nitrobacter winogradskyi Nb-255 3675758 YP_319387.1 CDS trmD NC_007406.1 3022113 3022832 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3022113..3022832 Nitrobacter winogradskyi Nb-255 3675759 YP_319388.1 CDS rplS NC_007406.1 3023053 3023433 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3023053..3023433 Nitrobacter winogradskyi Nb-255 3675760 YP_319389.1 CDS Nwi_2784 NC_007406.1 3023540 3023794 D hypothetical protein 3023540..3023794 Nitrobacter winogradskyi Nb-255 3675761 YP_319390.1 CDS Nwi_2785 NC_007406.1 3023869 3025275 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3023869..3025275 Nitrobacter winogradskyi Nb-255 3675762 YP_319391.1 CDS Nwi_2786 NC_007406.1 3025506 3026111 D hypothetical protein 3025506..3026111 Nitrobacter winogradskyi Nb-255 3675763 YP_319392.1 CDS Nwi_2787 NC_007406.1 3026228 3026533 R hypothetical protein complement(3026228..3026533) Nitrobacter winogradskyi Nb-255 3675764 YP_319393.1 CDS Nwi_2788 NC_007406.1 3026779 3027063 R hypothetical protein complement(3026779..3027063) Nitrobacter winogradskyi Nb-255 3675765 YP_319394.1 CDS Nwi_2789 NC_007406.1 3027261 3027599 R hypothetical protein complement(3027261..3027599) Nitrobacter winogradskyi Nb-255 3675766 YP_319395.1 CDS Nwi_2790 NC_007406.1 3027726 3028127 D hypothetical protein 3027726..3028127 Nitrobacter winogradskyi Nb-255 3677267 YP_319396.1 CDS leuD NC_007406.1 3028211 3028816 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3028211..3028816 Nitrobacter winogradskyi Nb-255 3677268 YP_319397.1 CDS Nwi_2792 NC_007406.1 3028966 3029616 D carbonic anhydrase 3028966..3029616 Nitrobacter winogradskyi Nb-255 3677269 YP_319398.1 CDS Nwi_2793 NC_007406.1 3029712 3030746 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(3029712..3030746) Nitrobacter winogradskyi Nb-255 3677270 YP_319399.1 CDS Nwi_2794 NC_007406.1 3031143 3031535 D hypothetical protein 3031143..3031535 Nitrobacter winogradskyi Nb-255 3677271 YP_319400.1 CDS Nwi_2795 NC_007406.1 3031658 3032770 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(3031658..3032770) Nitrobacter winogradskyi Nb-255 3677272 YP_319401.1 CDS Nwi_2796 NC_007406.1 3033072 3033581 R copper/Zinc superoxide dismutase complement(3033072..3033581) Nitrobacter winogradskyi Nb-255 3677273 YP_319402.1 CDS Nwi_2797 NC_007406.1 3033915 3035471 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 3033915..3035471 Nitrobacter winogradskyi Nb-255 3677274 YP_319403.1 CDS Nwi_2798 NC_007406.1 3035592 3036017 D succinate dehydrogenase, cytochrome b subunit 3035592..3036017 Nitrobacter winogradskyi Nb-255 3677275 YP_319404.1 CDS Nwi_2799 NC_007406.1 3036014 3036421 D succinate dehydrogenase, cytochrome b subunit 3036014..3036421 Nitrobacter winogradskyi Nb-255 3677276 YP_319405.1 CDS sdhA NC_007406.1 3036425 3038248 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3036425..3038248 Nitrobacter winogradskyi Nb-255 3677277 YP_319406.1 CDS sdhB NC_007406.1 3038472 3039254 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 3038472..3039254 Nitrobacter winogradskyi Nb-255 3677278 YP_319407.1 CDS Nwi_2802 NC_007406.1 3039920 3041911 D OmpA/MotB protein 3039920..3041911 Nitrobacter winogradskyi Nb-255 3677279 YP_319408.1 CDS Nwi_2803 NC_007406.1 3042012 3043241 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(3042012..3043241) Nitrobacter winogradskyi Nb-255 3677280 YP_319409.1 CDS Nwi_2804 NC_007406.1 3043312 3044100 R PA-phosphatase-like phosphoesterase complement(3043312..3044100) Nitrobacter winogradskyi Nb-255 3677281 YP_319410.1 CDS Nwi_2805 NC_007406.1 3044272 3044748 R hypothetical protein complement(3044272..3044748) Nitrobacter winogradskyi Nb-255 3677282 YP_319411.1 CDS Nwi_2806 NC_007406.1 3044785 3046068 R hypothetical protein complement(3044785..3046068) Nitrobacter winogradskyi Nb-255 3677283 YP_319412.1 CDS Nwi_2807 NC_007406.1 3046248 3046796 R hypothetical protein complement(3046248..3046796) Nitrobacter winogradskyi Nb-255 3677284 YP_319413.1 CDS Nwi_2808 NC_007406.1 3047161 3047541 R hypothetical protein complement(3047161..3047541) Nitrobacter winogradskyi Nb-255 3677285 YP_319414.1 CDS phhB NC_007406.1 3047651 3047956 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3047651..3047956) Nitrobacter winogradskyi Nb-255 3675982 YP_319415.1 CDS Nwi_2810 NC_007406.1 3048298 3048636 D 4Fe-4S ferredoxin 3048298..3048636 Nitrobacter winogradskyi Nb-255 3675983 YP_319416.1 CDS Nwi_2811 NC_007406.1 3048702 3049193 D hypothetical protein 3048702..3049193 Nitrobacter winogradskyi Nb-255 3675984 YP_319417.1 CDS Nwi_2812 NC_007406.1 3049285 3051198 R molecular chaperone; heat shock protein 90 complement(3049285..3051198) Nitrobacter winogradskyi Nb-255 3675985 YP_319418.1 CDS Nwi_2813 NC_007406.1 3051635 3052300 D PepSY-associated TM helix family protein 3051635..3052300 Nitrobacter winogradskyi Nb-255 3675986 YP_319419.1 CDS Nwi_2814 NC_007406.1 3052311 3052823 D hypothetical protein 3052311..3052823 Nitrobacter winogradskyi Nb-255 3675987 YP_319420.1 CDS Nwi_2815 NC_007406.1 3052984 3053796 D hypothetical protein 3052984..3053796 Nitrobacter winogradskyi Nb-255 3675988 YP_319421.1 CDS Nwi_2816 NC_007406.1 3053801 3054817 D ApbE-like lipoprotein 3053801..3054817 Nitrobacter winogradskyi Nb-255 3675989 YP_319422.1 CDS Nwi_2817 NC_007406.1 3054930 3055952 R tRNA-dihydrouridine synthase A complement(3054930..3055952) Nitrobacter winogradskyi Nb-255 3675990 YP_319423.1 CDS Nwi_2818 NC_007406.1 3056107 3057057 R integrase catalytic subunit complement(3056107..3057057) Nitrobacter winogradskyi Nb-255 3675991 YP_319424.1 CDS Nwi_2819 NC_007406.1 3057115 3058095 R Fis family transcriptional regulator complement(3057115..3058095) Nitrobacter winogradskyi Nb-255 3675992 YP_319425.1 CDS Nwi_2820 NC_007406.1 3058092 3058466 R transposase IS3/IS911 complement(3058092..3058466) Nitrobacter winogradskyi Nb-255 3675993 YP_319426.1 CDS Nwi_2821 NC_007406.1 3058571 3058834 D ISBm1, transposase orfA 3058571..3058834 Nitrobacter winogradskyi Nb-255 3674636 YP_319427.1 CDS Nwi_2822 NC_007406.1 3058876 3059259 D transposase, IS4 3058876..3059259 Nitrobacter winogradskyi Nb-255 3674637 YP_319428.1 CDS Nwi_2823 NC_007406.1 3059315 3059713 D transposase 3059315..3059713 Nitrobacter winogradskyi Nb-255 3674638 YP_319429.1 CDS Nwi_2824 NC_007406.1 3059728 3060096 D transposase, IS4 3059728..3060096 Nitrobacter winogradskyi Nb-255 3674639 YP_319430.1 CDS Nwi_2825 NC_007406.1 3060211 3060483 R hypothetical protein complement(3060211..3060483) Nitrobacter winogradskyi Nb-255 3674640 YP_319431.1 CDS Nwi_2826 NC_007406.1 3060486 3061571 R hypothetical protein complement(3060486..3061571) Nitrobacter winogradskyi Nb-255 3674641 YP_319432.1 CDS Nwi_2827 NC_007406.1 3061624 3062334 R hypothetical protein complement(3061624..3062334) Nitrobacter winogradskyi Nb-255 3674642 YP_319433.1 CDS Nwi_2828 NC_007406.1 3062340 3063005 R hypothetical protein complement(3062340..3063005) Nitrobacter winogradskyi Nb-255 3674643 YP_319434.1 CDS Nwi_2829 NC_007406.1 3063138 3063770 R hypothetical protein complement(3063138..3063770) Nitrobacter winogradskyi Nb-255 3675044 YP_319435.1 CDS Nwi_2830 NC_007406.1 3063767 3064078 R hypothetical protein complement(3063767..3064078) Nitrobacter winogradskyi Nb-255 3675045 YP_319436.1 CDS Nwi_2831 NC_007406.1 3064078 3064413 R hypothetical protein complement(3064078..3064413) Nitrobacter winogradskyi Nb-255 3675046 YP_319437.1 CDS Nwi_2833 NC_007406.1 3064879 3065343 D prophage LambdaMc01, site-specific recombinase resolvase 3064879..3065343 Nitrobacter winogradskyi Nb-255 3675048 YP_319438.1 CDS Nwi_2834 NC_007406.1 3065475 3065858 D hypothetical protein 3065475..3065858 Nitrobacter winogradskyi Nb-255 3675049 YP_319439.1 CDS Nwi_2835 NC_007406.1 3065862 3066695 R hypothetical protein complement(3065862..3066695) Nitrobacter winogradskyi Nb-255 3675204 YP_319440.1 CDS Nwi_2836 NC_007406.1 3066705 3067226 R hypothetical protein complement(3066705..3067226) Nitrobacter winogradskyi Nb-255 3675205 YP_319441.1 CDS Nwi_2837 NC_007406.1 3067306 3067887 R hypothetical protein complement(3067306..3067887) Nitrobacter winogradskyi Nb-255 3675206 YP_319442.1 CDS Nwi_2838 NC_007406.1 3067887 3068654 R Phage Gp37Gp68 complement(3067887..3068654) Nitrobacter winogradskyi Nb-255 3675207 YP_319443.1 CDS Nwi_2839 NC_007406.1 3069234 3069695 R integrase catalytic subunit complement(3069234..3069695) Nitrobacter winogradskyi Nb-255 3675209 YP_319444.1 CDS Nwi_2840 NC_007406.1 3069897 3070175 D hypothetical protein 3069897..3070175 Nitrobacter winogradskyi Nb-255 3675210 YP_319445.1 CDS Nwi_2841 NC_007406.1 3070201 3071211 D resolvase 3070201..3071211 Nitrobacter winogradskyi Nb-255 3675211 YP_319446.1 CDS Nwi_2842 NC_007406.1 3071202 3071708 D IstB-like ATP-binding protein 3071202..3071708 Nitrobacter winogradskyi Nb-255 3675212 YP_319447.1 CDS Nwi_2845 NC_007406.1 3074650 3076608 R outer membrane autotransporter barrel complement(3074650..3076608) Nitrobacter winogradskyi Nb-255 3675215 YP_319448.1 CDS Nwi_2846 NC_007406.1 3077297 3079423 D peptidase C14, caspase catalytic subunit p20 3077297..3079423 Nitrobacter winogradskyi Nb-255 3675593 YP_319449.1 CDS Nwi_2847 NC_007406.1 3079878 3080519 R ISRm2011-2 transposase complement(3079878..3080519) Nitrobacter winogradskyi Nb-255 3675594 YP_319450.1 CDS Nwi_2848 NC_007406.1 3080471 3080821 R transposase complement(3080471..3080821) Nitrobacter winogradskyi Nb-255 3675595 YP_319451.1 CDS Nwi_2849 NC_007406.1 3081298 3081678 R hypothetical protein complement(3081298..3081678) Nitrobacter winogradskyi Nb-255 3675596 YP_319452.1 CDS Nwi_2850 NC_007406.1 3081743 3082732 R integrase catalytic subunit complement(3081743..3082732) Nitrobacter winogradskyi Nb-255 3675597 YP_319453.1 CDS Nwi_2851 NC_007406.1 3083032 3084996 D hypothetical protein 3083032..3084996 Nitrobacter winogradskyi Nb-255 3675598 YP_319454.1 CDS Nwi_2852 NC_007406.1 3085190 3086434 R glycosyl transferase family protein complement(3085190..3086434) Nitrobacter winogradskyi Nb-255 3675599 YP_319455.1 CDS Nwi_2853 NC_007406.1 3086450 3087817 R Na+/H+ antiporter NhaA complement(3086450..3087817) Nitrobacter winogradskyi Nb-255 3675600 YP_319456.1 CDS Nwi_2854 NC_007406.1 3087931 3088629 D hypothetical protein 3087931..3088629 Nitrobacter winogradskyi Nb-255 3675601 YP_319457.1 CDS Nwi_2855 NC_007406.1 3088669 3088977 D hypothetical protein 3088669..3088977 Nitrobacter winogradskyi Nb-255 3675602 YP_319458.1 CDS Nwi_2856 NC_007406.1 3088981 3089493 D N-acetyltransferase 3088981..3089493 Nitrobacter winogradskyi Nb-255 3675603 YP_319459.1 CDS Nwi_2857 NC_007406.1 3089533 3089808 D hypothetical protein 3089533..3089808 Nitrobacter winogradskyi Nb-255 3675604 YP_319460.1 CDS Nwi_2858 NC_007406.1 3090054 3090386 D hypothetical protein 3090054..3090386 Nitrobacter winogradskyi Nb-255 3675605 YP_319461.1 CDS Nwi_2859 NC_007406.1 3090452 3092632 D ParB-like nuclease 3090452..3092632 Nitrobacter winogradskyi Nb-255 3675606 YP_319462.1 CDS Nwi_2860 NC_007406.1 3092687 3093916 D tRNA/helicase-type nucleic acid binding protein 3092687..3093916 Nitrobacter winogradskyi Nb-255 3675607 YP_319463.1 CDS Nwi_2861 NC_007406.1 3094057 3094425 R transposase, IS4 complement(3094057..3094425) Nitrobacter winogradskyi Nb-255 3675608 YP_319464.1 CDS Nwi_2862 NC_007406.1 3094440 3094838 R transposase complement(3094440..3094838) Nitrobacter winogradskyi Nb-255 3675609 YP_319465.1 CDS Nwi_2863 NC_007406.1 3095047 3097812 D hypothetical protein 3095047..3097812 Nitrobacter winogradskyi Nb-255 3675610 YP_319466.1 CDS Nwi_2864 NC_007406.1 3097875 3098249 D transposase IS3/IS911 3097875..3098249 Nitrobacter winogradskyi Nb-255 3675611 YP_319467.1 CDS Nwi_2865 NC_007406.1 3098246 3099226 D Fis family transcriptional regulator 3098246..3099226 Nitrobacter winogradskyi Nb-255 3674838 YP_319468.1 CDS Nwi_2866 NC_007406.1 3099378 3100358 R Fis family transcriptional regulator complement(3099378..3100358) Nitrobacter winogradskyi Nb-255 3674839 YP_319469.1 CDS Nwi_2867 NC_007406.1 3100355 3100729 R transposase IS3/IS911 complement(3100355..3100729) Nitrobacter winogradskyi Nb-255 3674840 YP_319470.1 CDS Nwi_2868 NC_007406.1 3101193 3102485 R hypothetical protein complement(3101193..3102485) Nitrobacter winogradskyi Nb-255 3674841 YP_319471.1 CDS Nwi_2869 NC_007406.1 3102475 3102816 R hypothetical protein complement(3102475..3102816) Nitrobacter winogradskyi Nb-255 3674842 YP_319472.1 CDS Nwi_2870 NC_007406.1 3103163 3103435 D hypothetical protein 3103163..3103435 Nitrobacter winogradskyi Nb-255 3674843 YP_319473.1 CDS Nwi_2871 NC_007406.1 3103444 3104322 D hypothetical protein 3103444..3104322 Nitrobacter winogradskyi Nb-255 3674844 YP_319474.1 CDS Nwi_2872 NC_007406.1 3104297 3104968 D hypothetical protein 3104297..3104968 Nitrobacter winogradskyi Nb-255 3675495 YP_319475.1 CDS Nwi_2873 NC_007406.1 3104952 3105659 D hypothetical protein 3104952..3105659 Nitrobacter winogradskyi Nb-255 3676703 YP_319476.1 CDS Nwi_2874 NC_007406.1 3105391 3106449 D hypothetical protein 3105391..3106449 Nitrobacter winogradskyi Nb-255 3676704 YP_319477.1 CDS Nwi_2875 NC_007406.1 3106724 3107272 D hypothetical protein 3106724..3107272 Nitrobacter winogradskyi Nb-255 3676705 YP_319478.1 CDS Nwi_2876 NC_007406.1 3107347 3108009 R hypothetical protein complement(3107347..3108009) Nitrobacter winogradskyi Nb-255 3676706 YP_319479.1 CDS Nwi_2877 NC_007406.1 3108006 3108965 R hypothetical protein complement(3108006..3108965) Nitrobacter winogradskyi Nb-255 3676707 YP_319480.1 CDS Nwi_2878 NC_007406.1 3109234 3109506 D hypothetical protein 3109234..3109506 Nitrobacter winogradskyi Nb-255 3676708 YP_319481.1 CDS Nwi_2879 NC_007406.1 3109684 3110664 R Fis family transcriptional regulator complement(3109684..3110664) Nitrobacter winogradskyi Nb-255 3676709 YP_319482.1 CDS Nwi_2880 NC_007406.1 3110661 3111035 R transposase IS3/IS911 complement(3110661..3111035) Nitrobacter winogradskyi Nb-255 3676710 YP_319483.1 CDS Nwi_2881 NC_007406.1 3111299 3113764 R TonB-dependent siderophore receptor complement(3111299..3113764) Nitrobacter winogradskyi Nb-255 3676711 YP_319484.1 CDS Nwi_2882 NC_007406.1 3113977 3114981 R FecR protein complement(3113977..3114981) Nitrobacter winogradskyi Nb-255 3676712 YP_319485.1 CDS Nwi_2883 NC_007406.1 3115272 3115790 R fec I like protein complement(3115272..3115790) Nitrobacter winogradskyi Nb-255 3676713 YP_319486.1 CDS Nwi_2884 NC_007406.1 3116136 3116744 R hypothetical protein complement(3116136..3116744) Nitrobacter winogradskyi Nb-255 3676714 YP_319487.1 CDS Nwi_2885 NC_007406.1 3116844 3117314 R marR family transcriptional regulator complement(3116844..3117314) Nitrobacter winogradskyi Nb-255 3676841 YP_319488.1 CDS Nwi_2886 NC_007406.1 3117599 3118045 D glyoxalase/bleomycin resistance protein/dioxygenase 3117599..3118045 Nitrobacter winogradskyi Nb-255 3676842 YP_319489.1 CDS Nwi_2887 NC_007406.1 3118159 3119334 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta complement(3118159..3119334) Nitrobacter winogradskyi Nb-255 3676843 YP_319490.1 CDS Nwi_2888 NC_007406.1 3119427 3122336 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(3119427..3122336) Nitrobacter winogradskyi Nb-255 3676844 YP_319491.1 CDS Nwi_2889 NC_007406.1 3122721 3123539 D hypothetical protein 3122721..3123539 Nitrobacter winogradskyi Nb-255 3676845 YP_319492.1 CDS Nwi_2890 NC_007406.1 3123918 3126233 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 3123918..3126233 Nitrobacter winogradskyi Nb-255 3676846 YP_319493.1 CDS Nwi_2891 NC_007406.1 3126624 3127214 D ErfK/YbiS/YcfS/YnhG protein 3126624..3127214 Nitrobacter winogradskyi Nb-255 3676847 YP_319494.1 CDS Nwi_2892 NC_007406.1 3127270 3128307 D extracellular solute-binding protein 3127270..3128307 Nitrobacter winogradskyi Nb-255 3676848 YP_319495.1 CDS Nwi_2893 NC_007406.1 3128362 3129033 R hypothetical protein complement(3128362..3129033) Nitrobacter winogradskyi Nb-255 3675296 YP_319496.1 CDS Nwi_2894 NC_007406.1 3129380 3129850 D hypothetical protein 3129380..3129850 Nitrobacter winogradskyi Nb-255 3675297 YP_319497.1 CDS Nwi_2895 NC_007406.1 3130143 3131183 D beta-lactamase-like protein 3130143..3131183 Nitrobacter winogradskyi Nb-255 3675298 YP_319498.1 CDS Nwi_2896 NC_007406.1 3131312 3132493 R diguanylate cyclase complement(3131312..3132493) Nitrobacter winogradskyi Nb-255 3675299 YP_319499.1 CDS Nwi_2897 NC_007406.1 3133137 3133559 R hypothetical protein complement(3133137..3133559) Nitrobacter winogradskyi Nb-255 3675300 YP_319500.1 CDS Nwi_2898 NC_007406.1 3133769 3134167 R hypothetical protein complement(3133769..3134167) Nitrobacter winogradskyi Nb-255 3675301 YP_319501.1 CDS Nwi_2899 NC_007406.1 3134284 3135267 D integrase catalytic subunit 3134284..3135267 Nitrobacter winogradskyi Nb-255 3675302 YP_319502.1 CDS Nwi_2900 NC_007406.1 3135254 3135694 D hypothetical protein 3135254..3135694 Nitrobacter winogradskyi Nb-255 3675303 YP_319503.1 CDS Nwi_2901 NC_007406.1 3136007 3136378 D hypothetical protein 3136007..3136378 Nitrobacter winogradskyi Nb-255 3675304 YP_319504.1 CDS Nwi_2902 NC_007406.1 3136488 3138863 D TonB-dependent receptor 3136488..3138863 Nitrobacter winogradskyi Nb-255 3675305 YP_319505.1 CDS Nwi_2903 NC_007406.1 3138881 3140089 D BNR repeat-containing glycosyl hydrolase 3138881..3140089 Nitrobacter winogradskyi Nb-255 3675306 YP_319506.1 CDS Nwi_2904 NC_007406.1 3140086 3140613 D signal peptide protein 3140086..3140613 Nitrobacter winogradskyi Nb-255 3675573 YP_319507.1 CDS Nwi_2905 NC_007406.1 3140894 3142039 R high-affinity nickel-transporter complement(3140894..3142039) Nitrobacter winogradskyi Nb-255 3675574 YP_319508.1 CDS Nwi_2906 NC_007406.1 3142064 3142708 R hypothetical protein complement(3142064..3142708) Nitrobacter winogradskyi Nb-255 3675575 YP_319509.1 CDS Nwi_2907 NC_007406.1 3142941 3143309 D arsR family transcriptional regulator 3142941..3143309 Nitrobacter winogradskyi Nb-255 3675576 YP_319510.1 CDS Nwi_2908 NC_007406.1 3143373 3143567 R hypothetical protein complement(3143373..3143567) Nitrobacter winogradskyi Nb-255 3675577 YP_319511.1 CDS Nwi_2909 NC_007406.1 3143796 3144179 D hypothetical protein 3143796..3144179 Nitrobacter winogradskyi Nb-255 3675578 YP_319512.1 CDS Nwi_2910 NC_007406.1 3144439 3146007 R RND efflux system, outer membrane lipoprotein, NodT complement(3144439..3146007) Nitrobacter winogradskyi Nb-255 3675579 YP_319513.1 CDS Nwi_2911 NC_007406.1 3146048 3149200 R heavy metal efflux pump CzcA complement(3146048..3149200) Nitrobacter winogradskyi Nb-255 3675580 YP_319514.1 CDS Nwi_2912 NC_007406.1 3149219 3150475 R secretion protein HlyD complement(3149219..3150475) Nitrobacter winogradskyi Nb-255 3675581 YP_319515.1 CDS Nwi_2913 NC_007406.1 3150803 3151477 D two component transcriptional regulator 3150803..3151477 Nitrobacter winogradskyi Nb-255 3675582 YP_319516.1 CDS Nwi_2914 NC_007406.1 3151767 3153137 D Signal transduction histidine kinase 3151767..3153137 Nitrobacter winogradskyi Nb-255 3675583 YP_319517.1 CDS Nwi_2915 NC_007406.1 3153455 3153919 D hypothetical protein 3153455..3153919 Nitrobacter winogradskyi Nb-255 3675584 YP_319518.1 CDS Nwi_2916 NC_007406.1 3154666 3155184 D hypothetical protein 3154666..3155184 Nitrobacter winogradskyi Nb-255 3675585 YP_319519.1 CDS Nwi_2917 NC_007406.1 3155333 3156298 D integrase catalytic subunit 3155333..3156298 Nitrobacter winogradskyi Nb-255 3675586 YP_319520.1 CDS Nwi_2918 NC_007406.1 3156459 3157409 D integrase catalytic subunit 3156459..3157409 Nitrobacter winogradskyi Nb-255 3675587 YP_319521.1 CDS Nwi_2919 NC_007406.1 3157406 3158038 R transposase, IS4 complement(3157406..3158038) Nitrobacter winogradskyi Nb-255 3675588 YP_319522.1 CDS Nwi_2920 NC_007406.1 3157810 3158175 R ISBm1, transposase orfA complement(3157810..3158175) Nitrobacter winogradskyi Nb-255 3675589 YP_319523.1 CDS Nwi_2921 NC_007406.1 3158559 3159275 D ISRm2011-2 transposase 3158559..3159275 Nitrobacter winogradskyi Nb-255 3675590 YP_319524.1 CDS Nwi_2922 NC_007406.1 3159369 3159734 D ISBm1, transposase orfA 3159369..3159734 Nitrobacter winogradskyi Nb-255 3675591 YP_319525.1 CDS Nwi_2923 NC_007406.1 3160186 3160554 R transposase, IS4 complement(3160186..3160554) Nitrobacter winogradskyi Nb-255 3675592 YP_319526.1 CDS Nwi_2924 NC_007406.1 3161039 3161266 R IS4 family transposase complement(3161039..3161266) Nitrobacter winogradskyi Nb-255 3674279 YP_319527.1 CDS Nwi_2925 NC_007406.1 3161421 3161795 R transposase complement(3161421..3161795) Nitrobacter winogradskyi Nb-255 3674280 YP_319528.1 CDS Nwi_2926 NC_007406.1 3162244 3162555 D XRE family transcriptional regulator 3162244..3162555 Nitrobacter winogradskyi Nb-255 3674281 YP_319529.1 CDS Nwi_2927 NC_007406.1 3162872 3163786 R CbbX like protein complement(3162872..3163786) Nitrobacter winogradskyi Nb-255 3674282 YP_319530.1 CDS Nwi_2928 NC_007406.1 3163947 3164372 R ribulose bisphosphate carboxylase small subunit complement(3163947..3164372) Nitrobacter winogradskyi Nb-255 3674283 YP_319531.1 CDS rbcL NC_007406.1 3164384 3165853 R type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase complement(3164384..3165853) Nitrobacter winogradskyi Nb-255 3674284 YP_319532.1 CDS Nwi_2930 NC_007406.1 3166356 3167318 D LysR family transcriptional regulator 3166356..3167318 Nitrobacter winogradskyi Nb-255 3674285 YP_319533.1 CDS Nwi_2931 NC_007406.1 3167370 3167729 D nitrogen regulatory protein P-II 3167370..3167729 Nitrobacter winogradskyi Nb-255 3674286 YP_319534.1 CDS Nwi_2932 NC_007406.1 3167821 3169338 D carboxysome shell polypeptide 3167821..3169338 Nitrobacter winogradskyi Nb-255 3674287 YP_319535.1 CDS Nwi_2933 NC_007406.1 3170160 3170693 D ParB-like nuclease 3170160..3170693 Nitrobacter winogradskyi Nb-255 3674288 YP_319536.1 CDS Nwi_2934 NC_007406.1 3170987 3172111 D trypsin-like serine protease 3170987..3172111 Nitrobacter winogradskyi Nb-255 3674289 YP_319537.1 CDS Nwi_2935 NC_007406.1 3173112 3173627 R hypothetical protein complement(3173112..3173627) Nitrobacter winogradskyi Nb-255 3674290 YP_319538.1 CDS Nwi_2936 NC_007406.1 3173713 3174165 R heat shock protein Hsp20 complement(3173713..3174165) Nitrobacter winogradskyi Nb-255 3674291 YP_319539.1 CDS Nwi_2937 NC_007406.1 3174408 3174650 R hypothetical protein complement(3174408..3174650) Nitrobacter winogradskyi Nb-255 3674292 YP_319540.1 CDS Nwi_2938 NC_007406.1 3174778 3175032 D hypothetical protein 3174778..3175032 Nitrobacter winogradskyi Nb-255 3674293 YP_319541.1 CDS Nwi_2939 NC_007406.1 3175004 3175330 D heat shock protein Hsp20 3175004..3175330 Nitrobacter winogradskyi Nb-255 3674294 YP_319542.1 CDS Nwi_2940 NC_007406.1 3175421 3175927 D heat shock protein Hsp20 3175421..3175927 Nitrobacter winogradskyi Nb-255 3674295 YP_319543.1 CDS Nwi_2941 NC_007406.1 3176503 3177483 R Fis family transcriptional regulator complement(3176503..3177483) Nitrobacter winogradskyi Nb-255 3674296 YP_319544.1 CDS Nwi_2942 NC_007406.1 3177480 3177854 R transposase IS3/IS911 complement(3177480..3177854) Nitrobacter winogradskyi Nb-255 3674297 YP_319545.1 CDS Nwi_2943 NC_007406.1 3178224 3178634 D hypothetical protein 3178224..3178634 Nitrobacter winogradskyi Nb-255 3675873 YP_319546.1 CDS Nwi_2944 NC_007406.1 3178639 3179151 D bacteriophage-like protein 3178639..3179151 Nitrobacter winogradskyi Nb-255 3675874 YP_319547.1 CDS Nwi_2945 NC_007406.1 3179148 3180800 D resolvase 3179148..3180800 Nitrobacter winogradskyi Nb-255 3675875 YP_319548.1 CDS Nwi_2946 NC_007406.1 3181129 3181536 R response regulator receiver complement(3181129..3181536) Nitrobacter winogradskyi Nb-255 3674549 YP_319549.1 CDS Nwi_2947 NC_007406.1 3181663 3182550 D N-formylglutamate amidohydrolase 3181663..3182550 Nitrobacter winogradskyi Nb-255 3674550 YP_319550.1 CDS Nwi_2948 NC_007406.1 3182812 3183162 D transposase 3182812..3183162 Nitrobacter winogradskyi Nb-255 3674551 YP_319551.1 CDS Nwi_2949 NC_007406.1 3183114 3183755 D ISRm2011-2 transposase 3183114..3183755 Nitrobacter winogradskyi Nb-255 3674552 YP_319552.1 CDS Nwi_2950 NC_007406.1 3184287 3185072 D histidinol-phosphate phosphatase 3184287..3185072 Nitrobacter winogradskyi Nb-255 3674553 YP_319553.1 CDS Nwi_2951 NC_007406.1 3185229 3186263 R lysophospholipase complement(3185229..3186263) Nitrobacter winogradskyi Nb-255 3674554 YP_319554.1 CDS Nwi_2952 NC_007406.1 3186384 3186845 D heat shock protein Hsp20 3186384..3186845 Nitrobacter winogradskyi Nb-255 3674555 YP_319555.1 CDS Nwi_2953 NC_007406.1 3187299 3192089 D glutamine amidotransferase, class-II 3187299..3192089 Nitrobacter winogradskyi Nb-255 3674556 YP_319556.1 CDS gltD NC_007406.1 3192277 3193731 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3192277..3193731 Nitrobacter winogradskyi Nb-255 3674557 YP_319557.1 CDS Nwi_2955 NC_007406.1 3194169 3194522 D hypothetical protein 3194169..3194522 Nitrobacter winogradskyi Nb-255 3674558 YP_319558.1 CDS Nwi_2956 NC_007406.1 3194653 3196269 R hypothetical protein complement(3194653..3196269) Nitrobacter winogradskyi Nb-255 3674559 YP_319559.1 CDS Nwi_2957 NC_007406.1 3196435 3197847 R lytic murein transglycosylase complement(3196435..3197847) Nitrobacter winogradskyi Nb-255 3674560 YP_319560.1 CDS Nwi_2958 NC_007406.1 3198386 3199261 D UTP-glucose-1-phosphate uridylyltransferase 3198386..3199261 Nitrobacter winogradskyi Nb-255 3674561 YP_319561.1 CDS Nwi_2959 NC_007406.1 3199264 3199527 D hypothetical protein 3199264..3199527 Nitrobacter winogradskyi Nb-255 3674562 YP_319562.1 CDS Nwi_2960 NC_007406.1 3199706 3200119 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 3199706..3200119 Nitrobacter winogradskyi Nb-255 3675834 YP_319563.1 CDS Nwi_2961 NC_007406.1 3200351 3200638 D hypothetical protein 3200351..3200638 Nitrobacter winogradskyi Nb-255 3675835 YP_319564.1 CDS Nwi_2962 NC_007406.1 3200730 3201272 R hypothetical protein complement(3200730..3201272) Nitrobacter winogradskyi Nb-255 3675836 YP_319565.1 CDS Nwi_2963 NC_007406.1 3201543 3201758 D hypothetical protein 3201543..3201758 Nitrobacter winogradskyi Nb-255 3675837 YP_319566.1 CDS Nwi_2964 NC_007406.1 3202053 3203675 R hypothetical protein complement(3202053..3203675) Nitrobacter winogradskyi Nb-255 3675838 YP_319567.1 CDS Nwi_2965 NC_007406.1 3203727 3205019 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3203727..3205019) Nitrobacter winogradskyi Nb-255 3675839 YP_319568.1 CDS Nwi_2966 NC_007406.1 3205016 3205273 R hypothetical protein complement(3205016..3205273) Nitrobacter winogradskyi Nb-255 3675840 YP_319569.1 CDS Nwi_2967 NC_007406.1 3205430 3206983 D peptidase S10, serine carboxypeptidase 3205430..3206983 Nitrobacter winogradskyi Nb-255 3675841 YP_319570.1 CDS Nwi_2968 NC_007406.1 3207073 3208662 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3207073..3208662) Nitrobacter winogradskyi Nb-255 3675842 YP_319571.1 CDS Nwi_2969 NC_007406.1 3208869 3210041 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(3208869..3210041) Nitrobacter winogradskyi Nb-255 3675843 YP_319572.1 CDS Nwi_2970 NC_007406.1 3210235 3211065 R hypothetical protein complement(3210235..3211065) Nitrobacter winogradskyi Nb-255 3675844 YP_319573.1 CDS Nwi_2971 NC_007406.1 3211269 3212123 R hypothetical protein complement(3211269..3212123) Nitrobacter winogradskyi Nb-255 3675845 YP_319574.1 CDS Nwi_2972 NC_007406.1 3212266 3213534 R major facilitator superfamily transporter complement(3212266..3213534) Nitrobacter winogradskyi Nb-255 3675846 YP_319575.1 CDS glmM NC_007406.1 3213800 3215146 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(3213800..3215146) Nitrobacter winogradskyi Nb-255 3675847 YP_319576.1 CDS Nwi_2974 NC_007406.1 3215549 3215746 R hypothetical protein complement(3215549..3215746) Nitrobacter winogradskyi Nb-255 3675848 YP_319577.1 CDS Nwi_2975 NC_007406.1 3216030 3217910 R ferrous iron transport protein B complement(3216030..3217910) Nitrobacter winogradskyi Nb-255 3675849 YP_319578.1 CDS Nwi_2976 NC_007406.1 3217907 3218131 R hypothetical protein complement(3217907..3218131) Nitrobacter winogradskyi Nb-255 3675850 YP_319579.1 CDS Nwi_2977 NC_007406.1 3218479 3219318 R shikimate/quinate 5-dehydrogenase complement(3218479..3219318) Nitrobacter winogradskyi Nb-255 3675851 YP_319580.1 CDS Nwi_2978 NC_007406.1 3219524 3221614 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3219524..3221614) Nitrobacter winogradskyi Nb-255 3675852 YP_319581.1 CDS Nwi_2979 NC_007406.1 3221926 3222474 R hypothetical protein complement(3221926..3222474) Nitrobacter winogradskyi Nb-255 3675853 YP_319582.1 CDS Nwi_2980 NC_007406.1 3222711 3223913 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(3222711..3223913) Nitrobacter winogradskyi Nb-255 3675364 YP_319583.1 CDS Nwi_2981 NC_007406.1 3224352 3225002 D glutathione S-transferase 3224352..3225002 Nitrobacter winogradskyi Nb-255 3675365 YP_319584.1 CDS Nwi_2982 NC_007406.1 3225572 3226720 D hypothetical protein 3225572..3226720 Nitrobacter winogradskyi Nb-255 3675366 YP_319585.1 CDS Nwi_2983 NC_007406.1 3226762 3227316 R hypothetical protein complement(3226762..3227316) Nitrobacter winogradskyi Nb-255 3675367 YP_319586.1 CDS Nwi_2984 NC_007406.1 3227742 3227948 R hypothetical protein complement(3227742..3227948) Nitrobacter winogradskyi Nb-255 3675368 YP_319587.1 CDS Nwi_2985 NC_007406.1 3227976 3229283 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(3227976..3229283) Nitrobacter winogradskyi Nb-255 3675369 YP_319588.1 CDS Nwi_2986 NC_007406.1 3229453 3230904 D XRE family transcriptional regulator 3229453..3230904 Nitrobacter winogradskyi Nb-255 3675370 YP_319589.1 CDS Nwi_2987 NC_007406.1 3230988 3231554 R cytochrome c, class I complement(3230988..3231554) Nitrobacter winogradskyi Nb-255 3675371 YP_319590.1 CDS Nwi_2988 NC_007406.1 3231541 3232818 R oxidoreductase, molybdopterin binding complement(3231541..3232818) Nitrobacter winogradskyi Nb-255 3675372 YP_319591.1 CDS Nwi_2989 NC_007406.1 3233183 3233686 D hypothetical protein 3233183..3233686 Nitrobacter winogradskyi Nb-255 3675373 YP_319592.1 CDS glpD NC_007406.1 3233767 3235341 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(3233767..3235341) Nitrobacter winogradskyi Nb-255 3675374 YP_319593.1 CDS Nwi_2991 NC_007406.1 3235503 3235847 R hypothetical protein complement(3235503..3235847) Nitrobacter winogradskyi Nb-255 3675375 YP_319594.1 CDS Nwi_2992 NC_007406.1 3236070 3236519 R thioesterase complement(3236070..3236519) Nitrobacter winogradskyi Nb-255 3675376 YP_319595.1 CDS Nwi_2993 NC_007406.1 3236569 3238659 R 3-hydroxyacyl-CoA dehydrogenase complement(3236569..3238659) Nitrobacter winogradskyi Nb-255 3675377 YP_319596.1 CDS Nwi_2994 NC_007406.1 3238667 3239950 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(3238667..3239950) Nitrobacter winogradskyi Nb-255 3675378 YP_319597.1 CDS fadE NC_007406.1 3239950 3242217 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(3239950..3242217) Nitrobacter winogradskyi Nb-255 3675379 YP_319598.1 CDS Nwi_2996 NC_007406.1 3242656 3244752 D methyl-accepting chemotaxis protein 3242656..3244752 Nitrobacter winogradskyi Nb-255 3675380 YP_319599.1 CDS Nwi_2997 NC_007406.1 3244955 3245170 D CsbD-like protein 3244955..3245170 Nitrobacter winogradskyi Nb-255 3675381 YP_319600.1 CDS Nwi_2998 NC_007406.1 3245308 3246075 D rhodanese-like sulfurtransferase 3245308..3246075 Nitrobacter winogradskyi Nb-255 3675382 YP_319601.1 CDS Nwi_2999 NC_007406.1 3246068 3246280 D hypothetical protein 3246068..3246280 Nitrobacter winogradskyi Nb-255 3675026 YP_319602.1 CDS Nwi_3000 NC_007406.1 3246425 3247741 D hypothetical protein 3246425..3247741 Nitrobacter winogradskyi Nb-255 3675027 YP_319603.1 CDS Nwi_3001 NC_007406.1 3247773 3248759 R 2-nitropropane dioxygenase complement(3247773..3248759) Nitrobacter winogradskyi Nb-255 3675028 YP_319604.1 CDS Nwi_3002 NC_007406.1 3248790 3249728 D hypothetical protein 3248790..3249728 Nitrobacter winogradskyi Nb-255 3675029 YP_319605.1 CDS Nwi_3003 NC_007406.1 3249908 3250195 D hypothetical protein 3249908..3250195 Nitrobacter winogradskyi Nb-255 3675030 YP_319606.1 CDS Nwi_3004 NC_007406.1 3250656 3253904 D hypothetical protein 3250656..3253904 Nitrobacter winogradskyi Nb-255 3675031 YP_319607.1 CDS Nwi_3005 NC_007406.1 3253873 3254136 R hypothetical protein complement(3253873..3254136) Nitrobacter winogradskyi Nb-255 3675032 YP_319608.1 CDS Nwi_3006 NC_007406.1 3254250 3255068 D formate/nitrite transporter 3254250..3255068 Nitrobacter winogradskyi Nb-255 3675033 YP_319609.1 CDS Nwi_3007 NC_007406.1 3256019 3256369 D transposase 3256019..3256369 Nitrobacter winogradskyi Nb-255 3675034 YP_319610.1 CDS Nwi_3008 NC_007406.1 3256321 3256962 D ISRm2011-2 transposase 3256321..3256962 Nitrobacter winogradskyi Nb-255 3675035 YP_319611.1 CDS Nwi_3009 NC_007406.1 3257416 3257841 R PadR family transcriptional regulator complement(3257416..3257841) Nitrobacter winogradskyi Nb-255 3675036 YP_319612.1 CDS Nwi_3010 NC_007406.1 3259073 3259363 R hypothetical protein complement(3259073..3259363) Nitrobacter winogradskyi Nb-255 3675037 YP_319613.1 CDS Nwi_3011 NC_007406.1 3259751 3260008 R hypothetical protein complement(3259751..3260008) Nitrobacter winogradskyi Nb-255 3675039 YP_319614.1 CDS Nwi_3012 NC_007406.1 3260152 3260460 R serinethreonine protein phosphatase complement(3260152..3260460) Nitrobacter winogradskyi Nb-255 3675040 YP_319615.1 CDS Nwi_3013 NC_007406.1 3260522 3260890 R transposase, IS4 complement(3260522..3260890) Nitrobacter winogradskyi Nb-255 3675041 YP_319616.1 CDS Nwi_3014 NC_007406.1 3260905 3261303 R transposase complement(3260905..3261303) Nitrobacter winogradskyi Nb-255 3675042 YP_319617.1 CDS Nwi_3015 NC_007406.1 3261324 3261677 R serine/threonine protein phosphatase complement(3261324..3261677) Nitrobacter winogradskyi Nb-255 3675043 YP_319618.1 CDS Nwi_3016 NC_007406.1 3261757 3263301 R thiamine-pyrophosphate requiring enzyme; hypothetical protein complement(3261757..3263301) Nitrobacter winogradskyi Nb-255 3676386 YP_319619.1 CDS Nwi_3017 NC_007406.1 3263528 3264091 D ErfK/YbiS/YcfS/YnhG protein 3263528..3264091 Nitrobacter winogradskyi Nb-255 3676387 YP_319620.1 CDS Nwi_3018 NC_007406.1 3264190 3265413 R acyl-CoA dehydrogenase complement(3264190..3265413) Nitrobacter winogradskyi Nb-255 3676388 YP_319621.1 CDS Nwi_3019 NC_007406.1 3265668 3267176 D hypothetical protein 3265668..3267176 Nitrobacter winogradskyi Nb-255 3676389 YP_319622.1 CDS Nwi_3020 NC_007406.1 3267173 3268219 D hypothetical protein 3267173..3268219 Nitrobacter winogradskyi Nb-255 3676390 YP_319623.1 CDS Nwi_3021 NC_007406.1 3268446 3270194 R hypothetical protein complement(3268446..3270194) Nitrobacter winogradskyi Nb-255 3676391 YP_319624.1 CDS Nwi_3022 NC_007406.1 3270578 3271780 D oxidoreductase, molybdopterin binding 3270578..3271780 Nitrobacter winogradskyi Nb-255 3676392 YP_319625.1 CDS Nwi_3023 NC_007406.1 3271792 3272124 D cytochrome c oxidoreductase subunit B 3271792..3272124 Nitrobacter winogradskyi Nb-255 3676393 YP_319626.1 CDS Nwi_3024 NC_007406.1 3272481 3273962 R glycosyl transferase family protein complement(3272481..3273962) Nitrobacter winogradskyi Nb-255 3676394 YP_319627.1 CDS Nwi_3025 NC_007406.1 3274143 3275936 R glycoside hydrolase 15-related complement(3274143..3275936) Nitrobacter winogradskyi Nb-255 3676395 YP_319628.1 CDS Nwi_3026 NC_007406.1 3275933 3276742 R trehalose-phosphatase complement(3275933..3276742) Nitrobacter winogradskyi Nb-255 3676396 YP_319629.1 CDS Nwi_3027 NC_007406.1 3276739 3278184 R major facilitator superfamily transporter complement(3276739..3278184) Nitrobacter winogradskyi Nb-255 3676397 YP_319630.1 CDS Nwi_3028 NC_007406.1 3278625 3279266 D OmpA/MotB protein 3278625..3279266 Nitrobacter winogradskyi Nb-255 3676398 YP_319631.1 CDS Nwi_3029 NC_007406.1 3279481 3281064 D peptidase C14 3279481..3281064 Nitrobacter winogradskyi Nb-255 3676399 YP_319632.1 CDS Nwi_3030 NC_007406.1 3281173 3282093 D secretion protein HlyD 3281173..3282093 Nitrobacter winogradskyi Nb-255 3676400 YP_319633.1 CDS Nwi_3031 NC_007406.1 3282093 3285221 D acriflavin resistance protein 3282093..3285221 Nitrobacter winogradskyi Nb-255 3676401 YP_319634.1 CDS Nwi_3032 NC_007406.1 3285439 3286113 R Crp/Fnr family transcriptional regulator complement(3285439..3286113) Nitrobacter winogradskyi Nb-255 3676402 YP_319635.1 CDS Nwi_3033 NC_007406.1 3286399 3288348 D hypothetical protein 3286399..3288348 Nitrobacter winogradskyi Nb-255 3676403 YP_319636.1 CDS Nwi_3034 NC_007406.1 3288524 3289138 R pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(3288524..3289138) Nitrobacter winogradskyi Nb-255 3676404 YP_319637.1 CDS Nwi_3035 NC_007406.1 3289280 3291028 R hypothetical protein complement(3289280..3291028) Nitrobacter winogradskyi Nb-255 3676405 YP_319638.1 CDS Nwi_3036 NC_007406.1 3291540 3292427 D peptidase C14, caspase catalytic subunit p20 3291540..3292427 Nitrobacter winogradskyi Nb-255 3676345 YP_319639.1 CDS Nwi_3037 NC_007406.1 3292619 3292987 R transposase, IS4 complement(3292619..3292987) Nitrobacter winogradskyi Nb-255 3676346 YP_319640.1 CDS Nwi_3038 NC_007406.1 3293002 3293400 R transposase complement(3293002..3293400) Nitrobacter winogradskyi Nb-255 3676347 YP_319641.1 CDS Nwi_3039 NC_007406.1 3293456 3294361 R secretion protein HlyD complement(3293456..3294361) Nitrobacter winogradskyi Nb-255 3676348 YP_319642.1 CDS Nwi_3040 NC_007406.1 3294495 3296942 R adenylyl cyclase complement(3294495..3296942) Nitrobacter winogradskyi Nb-255 3676349 YP_319643.1 CDS Nwi_3041 NC_007406.1 3297611 3297871 R hypothetical protein complement(3297611..3297871) Nitrobacter winogradskyi Nb-255 3676350 YP_319644.1 CDS Nwi_3042 NC_007406.1 3298326 3299363 R hypothetical protein complement(3298326..3299363) Nitrobacter winogradskyi Nb-255 3676351 YP_319645.1 CDS Nwi_3043 NC_007406.1 3299581 3302040 R TonB-dependent siderophore receptor complement(3299581..3302040) Nitrobacter winogradskyi Nb-255 3676352 YP_319646.1 CDS Nwi_3044 NC_007406.1 3302144 3303100 R FecR protein complement(3302144..3303100) Nitrobacter winogradskyi Nb-255 3676353 YP_319647.1 CDS Nwi_3045 NC_007406.1 3303193 3303741 R fec I like protein complement(3303193..3303741) Nitrobacter winogradskyi Nb-255 3676354 YP_319648.1 CDS Nwi_3047 NC_007406.1 3308899 3309219 D hypothetical protein 3308899..3309219 Nitrobacter winogradskyi Nb-255 3676356 YP_319649.1 CDS Nwi_3048 NC_007406.1 3309230 3310306 D Fe3+-siderophore ABC transporter permease 3309230..3310306 Nitrobacter winogradskyi Nb-255 3676357 YP_319650.1 CDS Nwi_3049 NC_007406.1 3310303 3311085 D ABC transporter ATPase 3310303..3311085 Nitrobacter winogradskyi Nb-255 3676358 YP_319651.1 CDS Nwi_3050 NC_007406.1 3311091 3311990 D Fe3+-hydroxamate ABC transporter substrate-binding protein 3311091..3311990 Nitrobacter winogradskyi Nb-255 3676359 YP_319652.1 CDS Nwi_3051 NC_007406.1 3312571 3314679 D TonB-dependent receptor 3312571..3314679 Nitrobacter winogradskyi Nb-255 3676360 YP_319653.1 CDS Nwi_3052 NC_007406.1 3315007 3315558 D TetR family transcriptional regulator 3315007..3315558 Nitrobacter winogradskyi Nb-255 3676361 YP_319654.1 CDS Nwi_3053 NC_007406.1 3315607 3316851 D major facilitator superfamily transporter 3315607..3316851 Nitrobacter winogradskyi Nb-255 3676362 YP_319655.1 CDS Nwi_3054 NC_007406.1 3317185 3317385 D cold-shock protein, DNA-binding 3317185..3317385 Nitrobacter winogradskyi Nb-255 3676363 YP_319656.1 CDS Nwi_3055 NC_007406.1 3317658 3320663 D proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 3317658..3320663 Nitrobacter winogradskyi Nb-255 3674519 YP_319657.1 CDS Nwi_3056 NC_007406.1 3320846 3321457 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(3320846..3321457) Nitrobacter winogradskyi Nb-255 3674520 YP_319658.1 CDS Nwi_3058 NC_007406.1 3322455 3324197 R phage head-tail adaptor complement(3322455..3324197) Nitrobacter winogradskyi Nb-255 3674522 YP_319659.1 CDS Nwi_3059 NC_007406.1 3324314 3324907 R polyhydroxyalkanoate synthesis repressor PhaR complement(3324314..3324907) Nitrobacter winogradskyi Nb-255 3674523 YP_319660.1 CDS Nwi_3060 NC_007406.1 3325200 3326378 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3325200..3326378 Nitrobacter winogradskyi Nb-255 3674524 YP_319661.1 CDS Nwi_3061 NC_007406.1 3326524 3327249 D acetoacetyl-CoA reductase 3326524..3327249 Nitrobacter winogradskyi Nb-255 3674525 YP_319662.1 CDS Nwi_3062 NC_007406.1 3327410 3328276 D hypothetical protein 3327410..3328276 Nitrobacter winogradskyi Nb-255 3674526 YP_319663.1 CDS Nwi_3063 NC_007406.1 3328361 3329719 R major facilitator superfamily transporter complement(3328361..3329719) Nitrobacter winogradskyi Nb-255 3674527 YP_319664.1 CDS def NC_007406.1 3330017 3330580 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 3330017..3330580 Nitrobacter winogradskyi Nb-255 3674528 YP_319665.1 CDS fmt NC_007406.1 3330613 3331557 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 3330613..3331557 Nitrobacter winogradskyi Nb-255 3674529 YP_319666.1 CDS truA NC_007406.1 3331557 3332324 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 3331557..3332324 Nitrobacter winogradskyi Nb-255 3674530 YP_319667.1 CDS Nwi_3067 NC_007406.1 3332360 3332914 R 5'-methylthioadenosine nucleosidase complement(3332360..3332914) Nitrobacter winogradskyi Nb-255 3674531 YP_319668.1 CDS Nwi_3068 NC_007406.1 3332911 3334080 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(3332911..3334080) Nitrobacter winogradskyi Nb-255 3674532 YP_319669.1 CDS dapD NC_007406.1 3334088 3334933 R catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(3334088..3334933) Nitrobacter winogradskyi Nb-255 3674533 YP_319670.1 CDS Nwi_3070 NC_007406.1 3335007 3335723 R pyrimidine 5-nucleotidase complement(3335007..3335723) Nitrobacter winogradskyi Nb-255 3674534 YP_319671.1 CDS Nwi_3071 NC_007406.1 3335720 3336616 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(3335720..3336616) Nitrobacter winogradskyi Nb-255 3674535 YP_319672.1 CDS Nwi_3072 NC_007406.1 3336861 3337265 R hypothetical protein complement(3336861..3337265) Nitrobacter winogradskyi Nb-255 3674536 YP_319673.1 CDS engB NC_007406.1 3337262 3337915 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(3337262..3337915) Nitrobacter winogradskyi Nb-255 3674537 YP_319674.1 CDS Nwi_3074 NC_007406.1 3338066 3339910 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(3338066..3339910) Nitrobacter winogradskyi Nb-255 3674538 YP_319675.1 CDS Nwi_3075 NC_007406.1 3339983 3340318 R ribonuclease P protein complement(3339983..3340318) Nitrobacter winogradskyi Nb-255 3675400 YP_319676.2 CDS rpmH NC_007406.1 3340341 3340475 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3340341..3340475) Nitrobacter winogradskyi Nb-255 3675401 YP_319677.1 CDS Nwi_3077 NC_007406.1 3340794 3342272 D Signal transduction histidine kinase 3340794..3342272 Nitrobacter winogradskyi Nb-255 3675402 YP_319678.1 CDS Nwi_3078 NC_007406.1 3342676 3342957 R hypothetical protein complement(3342676..3342957) Nitrobacter winogradskyi Nb-255 3675404 YP_319679.1 CDS Nwi_3079 NC_007406.1 3343253 3343765 D fec I like protein 3343253..3343765 Nitrobacter winogradskyi Nb-255 3675405 YP_319680.1 CDS Nwi_3080 NC_007406.1 3343976 3344929 D FecR protein 3343976..3344929 Nitrobacter winogradskyi Nb-255 3675406 YP_319681.1 CDS Nwi_3082 NC_007406.1 3347998 3349545 R hypothetical protein complement(3347998..3349545) Nitrobacter winogradskyi Nb-255 3675408 YP_319682.1 CDS Nwi_3083 NC_007406.1 3349775 3350050 D transcriptional regulator AbrB 3349775..3350050 Nitrobacter winogradskyi Nb-255 3675409 YP_319683.1 CDS Nwi_3084 NC_007406.1 3350037 3350426 D twitching motility protein PilT 3350037..3350426 Nitrobacter winogradskyi Nb-255 3675410 YP_319684.1 CDS Nwi_3085 NC_007406.1 3350487 3350729 R hypothetical protein complement(3350487..3350729) Nitrobacter winogradskyi Nb-255 3675411 YP_319685.1 CDS Nwi_3086 NC_007406.1 3350938 3351918 R Fis family transcriptional regulator complement(3350938..3351918) Nitrobacter winogradskyi Nb-255 3675412 YP_319686.2 CDS Nwi_3087 NC_007406.1 3351915 3352289 R transposase complement(3351915..3352289) Nitrobacter winogradskyi Nb-255 3675413 YP_319687.1 CDS Nwi_3088 NC_007406.1 3352201 3352551 R hypothetical protein complement(3352201..3352551) Nitrobacter winogradskyi Nb-255 3675414 YP_319688.1 CDS Nwi_3089 NC_007406.1 3352646 3353755 R hypothetical protein complement(3352646..3353755) Nitrobacter winogradskyi Nb-255 3675415 YP_319689.1 CDS Nwi_3090 NC_007406.1 3354265 3354963 R hypothetical protein complement(3354265..3354963) Nitrobacter winogradskyi Nb-255 3675416 YP_319690.1 CDS Nwi_3091 NC_007406.1 3355012 3355374 R hypothetical protein complement(3355012..3355374) Nitrobacter winogradskyi Nb-255 3675417 YP_319691.1 CDS Nwi_3092 NC_007406.1 3355504 3355797 R plasmid stabilization system protein complement(3355504..3355797) Nitrobacter winogradskyi Nb-255 3676850 YP_319692.1 CDS Nwi_3093 NC_007406.1 3355797 3356051 R helix-turn-helix domain-containing protein complement(3355797..3356051) Nitrobacter winogradskyi Nb-255 3676851 YP_319693.1 CDS Nwi_3094 NC_007406.1 3356164 3356478 R hypothetical protein complement(3356164..3356478) Nitrobacter winogradskyi Nb-255 3676852 YP_319694.1 CDS Nwi_3095 NC_007406.1 3356539 3356796 R hypothetical protein complement(3356539..3356796) Nitrobacter winogradskyi Nb-255 3676853 YP_319695.1 CDS Nwi_3096 NC_007406.1 3357157 3357630 D hypothetical protein 3357157..3357630 Nitrobacter winogradskyi Nb-255 3676854 YP_319696.1 CDS Nwi_3097 NC_007406.1 3357671 3357820 D hypothetical protein 3357671..3357820 Nitrobacter winogradskyi Nb-255 3676855 YP_319697.1 CDS Nwi_3098 NC_007406.1 3358048 3358188 R hypothetical protein complement(3358048..3358188) Nitrobacter winogradskyi Nb-255 3676856 YP_319698.1 CDS Nwi_3099 NC_007406.1 3358275 3359714 R Fis family transcriptional regulator complement(3358275..3359714) Nitrobacter winogradskyi Nb-255 3676857 YP_319699.1 CDS lpxD NC_007406.1 3360148 3361173 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3360148..3361173) Nitrobacter winogradskyi Nb-255 3676858 YP_319700.1 CDS Nwi_3101 NC_007406.1 3362436 3362708 D hypothetical protein 3362436..3362708 Nitrobacter winogradskyi Nb-255 3676859 YP_319701.1 CDS Nwi_3102 NC_007406.1 3363057 3363431 D hypothetical protein 3363057..3363431 Nitrobacter winogradskyi Nb-255 3676860 YP_319702.1 CDS Nwi_3103 NC_007406.1 3363537 3364037 R hypothetical protein complement(3363537..3364037) Nitrobacter winogradskyi Nb-255 3676861 YP_319703.1 CDS Nwi_3104 NC_007406.1 3364037 3364288 R hypothetical protein complement(3364037..3364288) Nitrobacter winogradskyi Nb-255 3676862 YP_319704.1 CDS Nwi_3105 NC_007406.1 3364649 3365023 D transposase IS3/IS911 3364649..3365023 Nitrobacter winogradskyi Nb-255 3676863 YP_319705.1 CDS Nwi_3106 NC_007406.1 3365020 3366000 D Fis family transcriptional regulator 3365020..3366000 Nitrobacter winogradskyi Nb-255 3676864 YP_319706.1 CDS Nwi_3107 NC_007406.1 3366720 3366947 R hypothetical protein complement(3366720..3366947) Nitrobacter winogradskyi Nb-255 3676865 YP_319707.1 CDS Nwi_3108 NC_007406.1 3367692 3368012 R hypothetical protein complement(3367692..3368012) Nitrobacter winogradskyi Nb-255 3676866 YP_319708.1 CDS Nwi_3109 NC_007406.1 3368169 3369302 R resolvase complement(3368169..3369302) Nitrobacter winogradskyi Nb-255 3676867 YP_319709.1 CDS Nwi_3110 NC_007406.1 3369450 3369761 D hypothetical protein 3369450..3369761 Nitrobacter winogradskyi Nb-255 3676868 YP_319710.1 CDS Nwi_3111 NC_007406.1 3369761 3370135 D XRE family transcriptional regulator 3369761..3370135 Nitrobacter winogradskyi Nb-255 3677324 YP_319711.1 CDS Nwi_3112 NC_007406.1 3370265 3371245 R Fis family transcriptional regulator complement(3370265..3371245) Nitrobacter winogradskyi Nb-255 3677325 YP_319712.1 CDS Nwi_3113 NC_007406.1 3371242 3371616 R transposase IS3/IS911 complement(3371242..3371616) Nitrobacter winogradskyi Nb-255 3677326 YP_319713.1 CDS Nwi_3114 NC_007406.1 3371680 3371970 R hypothetical protein complement(3371680..3371970) Nitrobacter winogradskyi Nb-255 3677327 YP_319714.1 CDS Nwi_3115 NC_007406.1 3372305 3372703 D transposase 3372305..3372703 Nitrobacter winogradskyi Nb-255 3677328 YP_319715.1 CDS Nwi_3116 NC_007406.1 3372718 3373191 D transposase, IS4 3372718..3373191 Nitrobacter winogradskyi Nb-255 3677329 YP_319716.1 CDS Nwi_3117 NC_007406.1 3373040 3373633 R hypothetical protein complement(3373040..3373633) Nitrobacter winogradskyi Nb-255 3676086 YP_319717.1 CDS Nwi_3118 NC_007406.1 3373612 3373905 R hypothetical protein complement(3373612..3373905) Nitrobacter winogradskyi Nb-255 3676087 YP_319718.1 CDS Nwi_3119 NC_007406.1 3374542 3375570 D DNA-binding protein 3374542..3375570 Nitrobacter winogradskyi Nb-255 3676088 YP_319719.1 CDS Nwi_3120 NC_007406.1 3375563 3376264 D hypothetical protein 3375563..3376264 Nitrobacter winogradskyi Nb-255 3676089 YP_319720.1 CDS Nwi_3121 NC_007406.1 3376264 3377715 D hypothetical protein 3376264..3377715 Nitrobacter winogradskyi Nb-255 3676090 YP_319721.1 CDS Nwi_3122 NC_007406.1 3377702 3378556 D hypothetical protein 3377702..3378556 Nitrobacter winogradskyi Nb-255 3676091 YP_319722.1 CDS Nwi_3123 NC_007406.1 3379174 3379536 D arsR family transcriptional regulator 3379174..3379536 Nitrobacter winogradskyi Nb-255 3676092 YP_319723.1 CDS Nwi_3124 NC_007406.1 3379529 3380071 D low molecular weight phosphotyrosine protein phosphatase 3379529..3380071 Nitrobacter winogradskyi Nb-255 3676093 YP_319724.1 CDS Nwi_3125 NC_007406.1 3380081 3380506 D arsenate reductase 3380081..3380506 Nitrobacter winogradskyi Nb-255 3676094 YP_319725.1 CDS Nwi_3126 NC_007406.1 3380516 3381571 D arsenite efflux pump ACR3 3380516..3381571 Nitrobacter winogradskyi Nb-255 3676095 YP_319726.1 CDS Nwi_3127 NC_007406.1 3381571 3382287 D NADPH-dependent FMN reductase 3381571..3382287 Nitrobacter winogradskyi Nb-255 3676096 YP_319727.1 CDS Nwi_3128 NC_007406.1 3382367 3382678 R hypothetical protein complement(3382367..3382678) Nitrobacter winogradskyi Nb-255 3676097 YP_319728.1 CDS Nwi_3129 NC_007406.1 3382905 3383312 D hypothetical protein 3382905..3383312 Nitrobacter winogradskyi Nb-255 3676098 YP_319729.1 CDS Nwi_3130 NC_007406.1 3383309 3384730 D secretion protein HlyD 3383309..3384730 Nitrobacter winogradskyi Nb-255 3676099 YP_319730.1 CDS Nwi_3131 NC_007406.1 3384727 3387903 D heavy metal efflux pump CzcA 3384727..3387903 Nitrobacter winogradskyi Nb-255 3676730 YP_319731.1 CDS Nwi_3132 NC_007406.1 3388211 3388585 D hypothetical protein 3388211..3388585 Nitrobacter winogradskyi Nb-255 3676731 YP_319732.1 CDS Nwi_3133 NC_007406.1 3388840 3389259 R merR family transcriptional regulator complement(3388840..3389259) Nitrobacter winogradskyi Nb-255 3676732 YP_319733.1 CDS Nwi_3134 NC_007406.1 3389326 3391464 D heavy metal translocating P-type ATPase 3389326..3391464 Nitrobacter winogradskyi Nb-255 3676733 YP_319734.1 CDS Nwi_3135 NC_007406.1 3391517 3392596 R phage integrase complement(3391517..3392596) Nitrobacter winogradskyi Nb-255 3676734 YP_319735.1 CDS Nwi_3136 NC_007406.1 3392593 3394275 R phage integrase complement(3392593..3394275) Nitrobacter winogradskyi Nb-255 3676735 YP_319736.1 CDS Nwi_3137 NC_007406.1 3394776 3395561 R hypothetical protein complement(3394776..3395561) Nitrobacter winogradskyi Nb-255 3676736 YP_319737.1 CDS Nwi_3138 NC_007406.1 3395998 3397683 D resolvase 3395998..3397683 Nitrobacter winogradskyi Nb-255 3677209 YP_319738.1 CDS Nwi_3139 NC_007406.1 3398265 3399353 R metal-dependent phosphohydrolase complement(3398265..3399353) Nitrobacter winogradskyi Nb-255 3675790 YP_319739.1 CDS Nwi_3140 NC_007406.1 3399573 3400043 D hypothetical protein 3399573..3400043 Nitrobacter winogradskyi Nb-255 3675791 YP_319740.1 CDS Nwi_3141 NC_007406.1 3400281 3400595 R hypothetical protein complement(3400281..3400595) Nitrobacter winogradskyi Nb-255 3675792 YP_319741.1 CDS Nwi_3142 NC_007406.1 3400611 3400874 R hypothetical protein complement(3400611..3400874) Nitrobacter winogradskyi Nb-255 3675793 YP_319742.1 CDS rpsT NC_007406.1 3400955 3401221 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3400955..3401221 Nitrobacter winogradskyi Nb-255 3675794 323098000001 tRNA 323098000001 NC_007406.1 87473 87547 R tRNA-Gly complement(87473..87547) Nitrobacter winogradskyi Nb-255 323098000002 tRNA 323098000002 NC_007406.1 167120 167193 D tRNA-Gly 167120..167193 Nitrobacter winogradskyi Nb-255 323098000003 tRNA 323098000003 NC_007406.1 194684 194770 D tRNA-Leu 194684..194770 Nitrobacter winogradskyi Nb-255 323098000004 tRNA 323098000004 NC_007406.1 241612 241687 D tRNA-Ala 241612..241687 Nitrobacter winogradskyi Nb-255 323098000005 tRNA 323098000005 NC_007406.1 274519 274593 R tRNA-Thr complement(274519..274593) Nitrobacter winogradskyi Nb-255 323098000006 tRNA 323098000006 NC_007406.1 310616 310691 R tRNA-Phe complement(310616..310691) Nitrobacter winogradskyi Nb-255 323098000007 tRNA 323098000007 NC_007406.1 494086 494175 R tRNA-Ser complement(494086..494175) Nitrobacter winogradskyi Nb-255 323098000008 tRNA 323098000008 NC_007406.1 512678 512754 D tRNA-Arg 512678..512754 Nitrobacter winogradskyi Nb-255 323098000009 tRNA 323098000009 NC_007406.1 533217 533292 D tRNA-Thr 533217..533292 Nitrobacter winogradskyi Nb-255 323098000010 tRNA 323098000010 NC_007406.1 535345 535420 R tRNA-Ala complement(535345..535420) Nitrobacter winogradskyi Nb-255 323098000011 tRNA 323098000011 NC_007406.1 589505 589580 D tRNA-Met 589505..589580 Nitrobacter winogradskyi Nb-255 323098000012 tRNA 323098000012 NC_007406.1 639999 640075 D tRNA-Ile 639999..640075 Nitrobacter winogradskyi Nb-255 323098000013 tRNA 323098000013 NC_007406.1 640108 640183 D tRNA-Ala 640108..640183 Nitrobacter winogradskyi Nb-255 323098000014 tRNA 323098000014 NC_007406.1 684778 684854 D tRNA-Met 684778..684854 Nitrobacter winogradskyi Nb-255 323098000015 tRNA 323098000015 NC_007406.1 718800 718874 D tRNA-Gln 718800..718874 Nitrobacter winogradskyi Nb-255 323098000016 tRNA 323098000016 NC_007406.1 826066 826150 R tRNA-Leu complement(826066..826150) Nitrobacter winogradskyi Nb-255 323098000017 tRNA 323098000017 NC_007406.1 915544 915620 D tRNA-Met 915544..915620 Nitrobacter winogradskyi Nb-255 323098000018 tRNA 323098000018 NC_007406.1 1113523 1113599 D tRNA-His 1113523..1113599 Nitrobacter winogradskyi Nb-255 323098000019 tRNA 323098000019 NC_007406.1 1377955 1378028 D tRNA-Gln 1377955..1378028 Nitrobacter winogradskyi Nb-255 323098000020 tRNA 323098000020 NC_007406.1 1475662 1475737 R tRNA-Trp complement(1475662..1475737) Nitrobacter winogradskyi Nb-255 323098000021 tRNA 323098000021 NC_007406.1 1533855 1533932 D tRNA-Pro 1533855..1533932 Nitrobacter winogradskyi Nb-255 323098000022 tRNA 323098000022 NC_007406.1 1619556 1619645 D tRNA-Ser 1619556..1619645 Nitrobacter winogradskyi Nb-255 323098000023 tRNA 323098000023 NC_007406.1 1652754 1652827 R tRNA-Cys complement(1652754..1652827) Nitrobacter winogradskyi Nb-255 323098000024 tRNA 323098000024 NC_007406.1 1682382 1682458 D tRNA-Arg 1682382..1682458 Nitrobacter winogradskyi Nb-255 323098000025 tRNA 323098000025 NC_007406.1 1709371 1709448 D tRNA-Arg 1709371..1709448 Nitrobacter winogradskyi Nb-255 323098000026 tRNA 323098000026 NC_007406.1 1755655 1755731 R tRNA-Pro complement(1755655..1755731) Nitrobacter winogradskyi Nb-255 323098000027 tRNA 323098000027 NC_007406.1 1759786 1759860 D tRNA-Glu 1759786..1759860 Nitrobacter winogradskyi Nb-255 323098000028 tRNA 323098000028 NC_007406.1 1890319 1890403 R tRNA-Leu complement(1890319..1890403) Nitrobacter winogradskyi Nb-255 323098000029 tRNA 323098000029 NC_007406.1 1906243 1906319 D tRNA-Arg 1906243..1906319 Nitrobacter winogradskyi Nb-255 323098000030 tRNA 323098000030 NC_007406.1 1951048 1951122 D tRNA-Asn 1951048..1951122 Nitrobacter winogradskyi Nb-255 323098000031 tRNA 323098000031 NC_007406.1 1962421 1962496 D tRNA-Lys 1962421..1962496 Nitrobacter winogradskyi Nb-255 323098000032 tRNA 323098000032 NC_007406.1 2073336 2073412 R tRNA-Asp complement(2073336..2073412) Nitrobacter winogradskyi Nb-255 323098000033 tRNA 323098000033 NC_007406.1 2078266 2078342 D tRNA-Val 2078266..2078342 Nitrobacter winogradskyi Nb-255 323098000034 tRNA 323098000034 NC_007406.1 2085537 2085621 R tRNA-Leu complement(2085537..2085621) Nitrobacter winogradskyi Nb-255 323098000035 tRNA 323098000035 NC_007406.1 2121035 2121128 D tRNA-Ser 2121035..2121128 Nitrobacter winogradskyi Nb-255 323098000036 tRNA 323098000036 NC_007406.1 2244358 2244431 R tRNA-Gly complement(2244358..2244431) Nitrobacter winogradskyi Nb-255 323098000037 tRNA 323098000037 NC_007406.1 2246251 2246336 D tRNA-Tyr 2246251..2246336 Nitrobacter winogradskyi Nb-255 323098000038 tRNA 323098000038 NC_007406.1 2253607 2253681 D tRNA-Thr 2253607..2253681 Nitrobacter winogradskyi Nb-255 323098000039 tRNA 323098000039 NC_007406.1 2381182 2381270 R tRNA-Leu complement(2381182..2381270) Nitrobacter winogradskyi Nb-255 323098000040 tRNA 323098000040 NC_007406.1 2555231 2555306 R tRNA-Lys complement(2555231..2555306) Nitrobacter winogradskyi Nb-255 323098000041 tRNA 323098000041 NC_007406.1 2654247 2654321 D tRNA-Glu 2654247..2654321 Nitrobacter winogradskyi Nb-255 323098000042 tRNA 323098000042 NC_007406.1 2671615 2671689 D tRNA-OTHER 2671615..2671689 Nitrobacter winogradskyi Nb-255 323098000043 tRNA 323098000043 NC_007406.1 2672041 2672113 R tRNA-OTHER complement(2672041..2672113) Nitrobacter winogradskyi Nb-255 323098000044 tRNA 323098000044 NC_007406.1 2928541 2928617 R tRNA-Pro complement(2928541..2928617) Nitrobacter winogradskyi Nb-255 323098000045 tRNA 323098000045 NC_007406.1 3069030 3069119 R tRNA-Ser complement(3069030..3069119) Nitrobacter winogradskyi Nb-255 323098000046 tRNA 323098000046 NC_007406.1 3180981 3181055 R tRNA-Val complement(3180981..3181055) Nitrobacter winogradskyi Nb-255 323098000047 tRNA 323098000047 NC_007406.1 3259630 3259704 D tRNA-Val 3259630..3259704 Nitrobacter winogradskyi Nb-255 323098000048 tRNA 323098000048 NC_007406.1 3342499 3342575 D tRNA-Arg 3342499..3342575 Nitrobacter winogradskyi Nb-255 323098000049 tRNA 323098000049 NC_007406.1 3397654 3397730 R tRNA-Arg complement(3397654..3397730) Nitrobacter winogradskyi Nb-255 Nwi_R0013 rRNA Nwi_R0013 NC_007406.1 638302 639791 D 16S ribosomal RNA 638302..639791 Nitrobacter winogradskyi Nb-255 3676957 Nwi_R0016 rRNA Nwi_R0016 NC_007406.1 640614 643442 D 23S ribosomal RNA 640614..643442 Nitrobacter winogradskyi Nb-255 3674848 Nwi_R0017 rRNA Nwi_R0017 NC_007406.1 643504 643618 D 5S ribosomal RNA 643504..643618 Nitrobacter winogradskyi Nb-255 3675716