-- dump date 20240506_001734 -- class Genbank::Contig -- table contig_comment -- id comment NC_013960.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001798.1.REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin KlotzREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: AerobicREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotacticREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: MesophilicREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: MarineREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying,REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic DenitrifyingREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: ChemolithotrophicREFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle)REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001798.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## COMPLETENESS: full length. NC_013958.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001799.1.REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin KlotzREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: AerobicREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotacticREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: MesophilicREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: MarineREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying,REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic DenitrifyingREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: ChemolithotrophicREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle)REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001799.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082953 Source DNA and bacteria available from Martin Klotz (martin.klotz@louisville.edu) Contacts: Martin Klotz (martin.klotz@louisville.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Nitrosococcus halophilus Nc4 GOLD Stamp ID :: Gi04229 Oxygen Requirement :: Aerobic Motility :: Motile, chemotactic Temperature Range :: Mesophilic Gram Staining :: Gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Marine Phenotypes :: Obligate ammonia-oxidizing, Nitrifying, aerobic Denitrifying Energy Source :: Chemolithotrophic Carbon Source :: Autotrophic (Calvin Benson Basham cycle) ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000024725.1-RS_2024_03_28 Annotation Date :: 03/28/2024 01:05:02 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,963 CDSs (total) :: 3,909 Genes (coding) :: 3,846 CDSs (with protein) :: 3,846 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 44 ncRNAs :: 4 Pseudo Genes (total) :: 63 CDSs (without protein) :: 63 Pseudo Genes (ambiguous residues) :: 0 of 63 Pseudo Genes (frameshifted) :: 20 of 63 Pseudo Genes (incomplete) :: 38 of 63 Pseudo Genes (internal stop) :: 14 of 63 Pseudo Genes (multiple problems) :: 7 of 63 CRISPR Arrays :: 6 ##Genome-Annotation-Data-END## COMPLETENESS: full length.