-- dump date 20240506_002350 -- class Genbank::Contig -- table contig_comment -- id comment NC_014315.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002086.1.REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. KlotzREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, ChemolithotrophREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: MarineREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestrationREFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002086.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## COMPLETENESS: full length. NC_014316.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002087.1.REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. KlotzREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, ChemolithotrophREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: MarineREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestrationREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002087.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_014317.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002088.1.REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. KlotzREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/AREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, ChemolithotrophREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: MarineREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestrationREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002088.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4082961 Source DNA and organism available from Martin G. Klotz (martin.klotz@louisville.edu) Contacts: Martin G. Klotz (martin.klotz@louisville.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-PGF Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## investigation_type :: bacteria_archaea project_name :: Nitrosococcus watsoni C-113 collection_date :: N/A depth :: N/A alt_elev :: N/A country :: N/A num_replicons :: N/A ref_biomaterial :: N/A biotic_relationship :: Free living rel_to_oxygen :: Aerobe assembly :: N/A finishing_strategy :: N/A trophic_level :: Autotroph, Chemolithotroph environment :: Marine GOLD Stamp ID :: Gi05339 rel_to_oxygen :: Aerobe Motility :: Motile Temperature Range :: Mesophile Gram Staining :: gram- Diseases :: None Phenotypes :: Carbon sequestration ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/16/2024 01:38:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,170 CDSs (total) :: 3,115 Genes (coding) :: 3,055 CDSs (with protein) :: 3,055 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 4 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 20 of 60 Pseudo Genes (incomplete) :: 40 of 60 Pseudo Genes (internal stop) :: 13 of 60 Pseudo Genes (multiple problems) :: 11 of 60 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.