-- dump date   	20240420_055450
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_008344.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP000450.1.REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP000450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.
NC_008341.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP000451.1.REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP000451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.
NC_008342.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP000452.1.REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNLREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP000452.1. URL -- http://www.jgi.doe.gov JGI Project ID: 3634486 Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu) Contacts: Dan Arp (arpd@bcc.orst.edu)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000014765.1-RS_2024_04_08 Annotation Date                   :: 04/08/2024 02:09:47 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 2,741 CDSs (total)                      :: 2,693 Genes (coding)                    :: 2,585 CDSs (with protein)               :: 2,585 Genes (RNA)                       :: 48 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 41 ncRNAs                            :: 4 Pseudo Genes (total)              :: 108 CDSs (without protein)            :: 108 Pseudo Genes (ambiguous residues) :: 0 of 108 Pseudo Genes (frameshifted)       :: 58 of 108 Pseudo Genes (incomplete)         :: 78 of 108 Pseudo Genes (internal stop)      :: 37 of 108 Pseudo Genes (multiple problems)  :: 52 of 108 CRISPR Arrays                     :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.