-- dump date 20240506_003607 -- class Genbank::Contig -- table contig_comment -- id comment NC_014761.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002361.1.REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific OceanREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, MarineREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph,REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, OrganotrophREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: MicroaerophilicREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific RiseREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. MiroshnichenkoREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60CREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10 Pseudo Genes (internal stop) :: 1 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10 Pseudo Genes (internal stop) :: 1 of 10 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002361.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10 Pseudo Genes (internal stop) :: 1 of 10 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_014753.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002362.1.REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific OceanREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, MarineREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph,REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, OrganotrophREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: MicroaerophilicREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific RiseREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. MiroshnichenkoREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60CREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10 Pseudo Genes (internal stop) :: 1 of 10REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10 Pseudo Genes (internal stop) :: 1 of 10 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002362.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086262 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Oceanithermus profundus 506, DSM 14977 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Pacific Ocean environment :: Deep sea, Hydrothermal vent, Marine num_replicons :: 2 ref_biomaterial :: DSM 14977, VKM B-2274 biotic_relationship :: Free living trophic_level :: Chemoorganoheterotroph, Lithoheterotroph, Organotroph rel_to_oxygen :: Microaerophilic isol_growth_condt :: Missing sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi02932 Type Strain :: Yes Greengenes ID :: 20463 Funding Program :: DOE-GEBA 2009 Isolation Site :: Deep-sea hot vent; 13N, East Pacific Rise Isolation Comments :: isolated by M. L. Miroshnichenko Cell Shape :: Rod-shaped Motility :: Nonmotile Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 7.5 ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:29:52 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,458 CDSs (total) :: 2,402 Genes (coding) :: 2,392 CDSs (with protein) :: 2,392 Genes (RNA) :: 56 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 47 ncRNAs :: 3 Pseudo Genes (total) :: 10 CDSs (without protein) :: 10 Pseudo Genes (ambiguous residues) :: 0 of 10 Pseudo Genes (frameshifted) :: 2 of 10 Pseudo Genes (incomplete) :: 7 of 10 Pseudo Genes (internal stop) :: 1 of 10 ##Genome-Annotation-Data-END## COMPLETENESS: full length.