-- dump date 20140619_224440 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001248088.1 148283998 5218319 22..1431 1 NC_009488.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 1431 dnaA 5218319 dnaA Orientia tsutsugamushi str. Boryong chromosome replication initiator DnaA YP_001248088.1 22 D 357244 CDS YP_001248089.1 148283999 5218320 1450..2748 1 NC_009488.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2748 dnaN 5218320 dnaN Orientia tsutsugamushi str. Boryong DNA polymerase III subunit beta YP_001248089.1 1450 D 357244 CDS YP_001248090.1 148284000 5218321 2998..3678 1 NC_009488.1 type IV secretion system protein 3678 virB8 5218321 virB8 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001248090.1 2998 D 357244 CDS YP_001248091.1 148284001 5218322 3698..4099 1 NC_009488.1 type IV secretion system protein 4099 virB9 5218322 virB9 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001248091.1 3698 D 357244 CDS YP_001248092.1 148284002 5218323 4099..5628 1 NC_009488.1 type IV secretion system protein 5628 virB10 5218323 virB10 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001248092.1 4099 D 357244 CDS YP_001248093.1 148284003 5218324 5628..6617 1 NC_009488.1 type IV secretion system ATPase VirB11 6617 virB11 5218324 virB11 Orientia tsutsugamushi str. Boryong type IV secretion system ATPase VirB11 YP_001248093.1 5628 D 357244 CDS YP_001248094.1 148284004 5218325 6617..8389 1 NC_009488.1 type IV secretion system component VirD4 8389 virD4 5218325 virD4 Orientia tsutsugamushi str. Boryong type IV secretion system component VirD4 YP_001248094.1 6617 D 357244 CDS YP_001248095.1 148284005 5218327 10369..12168 1 NC_009488.1 hypothetical protein 12168 rhp2 5218327 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248095.1 10369 D 357244 CDS YP_001248096.1 148284006 5218330 complement(16150..16326) 1 NC_009488.1 hypothetical protein 16326 5218330 OTBS_0012 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248096.1 16150 R 357244 CDS YP_001248097.1 148284007 5218334 complement(18683..19633) 1 NC_009488.1 thioredoxin reductase 19633 trxB1 5218334 trxB1 Orientia tsutsugamushi str. Boryong thioredoxin reductase YP_001248097.1 18683 R 357244 CDS YP_001248098.1 148284008 5218335 complement(19769..20692) 1 NC_009488.1 hypothetical protein 20692 5218335 OTBS_0017 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248098.1 19769 R 357244 CDS YP_001248099.1 148284009 5218336 complement(20868..22229) 1 NC_009488.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 22229 tolB 5218336 tolB Orientia tsutsugamushi str. Boryong translocation protein TolB YP_001248099.1 20868 R 357244 CDS YP_001248100.1 148284010 5218337 complement(22560..23987) 1 NC_009488.1 dihydrolipoamide dehydrogenase 23987 lpdA 5218337 lpdA Orientia tsutsugamushi str. Boryong dihydrolipoamide dehydrogenase YP_001248100.1 22560 R 357244 CDS YP_001248101.1 148284011 5218338 complement(24079..24882) 1 NC_009488.1 hypothetical protein 24882 5218338 OTBS_0020 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248101.1 24079 R 357244 CDS YP_001248102.1 148284012 5218339 25057..25662 1 NC_009488.1 hypothetical protein 25662 5218339 OTBS_0021 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248102.1 25057 D 357244 CDS YP_001248103.1 148284013 5218343 28785..29750 1 NC_009488.1 transposase and inactivated derivative 29750 tnD 5218343 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248103.1 28785 D 357244 CDS YP_001248104.1 148284014 5218344 30179..31996 1 NC_009488.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 31996 nrdA 5218344 nrdA Orientia tsutsugamushi str. Boryong ribonucleotide-diphosphate reductase subunit alpha YP_001248104.1 30179 D 357244 CDS YP_001248105.1 148284015 5218345 32019..33008 1 NC_009488.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 33008 nrdF 5218345 nrdF Orientia tsutsugamushi str. Boryong ribonucleotide-diphosphate reductase subunit beta YP_001248105.1 32019 D 357244 CDS YP_001248106.1 148284016 5218350 38069..38404 1 NC_009488.1 hypothetical protein 38404 tchA 5218350 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248106.1 38069 D 357244 CDS YP_001248107.1 148284017 5218352 38952..39353 1 NC_009488.1 hypothetical protein 39353 tchB 5218352 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248107.1 38952 D 357244 CDS YP_001248108.1 148284018 5218353 39465..39929 1 NC_009488.1 conjugative pilus assembly protein 39929 traB 5218353 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248108.1 39465 D 357244 CDS YP_001248109.1 148284019 5218354 39929..40219 1 NC_009488.1 conjugative transfer protein 40219 traV 5218354 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248109.1 39929 D 357244 CDS YP_001248110.1 148284020 5218357 complement(41506..42480) 1 NC_009488.1 transposase and inactivated derivative 42480 tnE 5218357 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248110.1 41506 R 357244 CDS YP_001248111.1 148284021 5218358 complement(42602..43207) 1 NC_009488.1 spoT-like ppGpp hydrolase 43207 spoT1 5218358 spoT1 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248111.1 42602 R 357244 CDS YP_001248112.1 148284022 5218365 complement(46763..48487) 1 NC_009488.1 hypothetical protein 48487 rhp2 5218365 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248112.1 46763 R 357244 CDS YP_001248113.1 148284023 5218366 49164..50264 1 NC_009488.1 N-acetylmuramoyl-L-alanine amidase 50264 ybjR 5218366 ybjR Orientia tsutsugamushi str. Boryong N-acetylmuramoyl-L-alanine amidase YP_001248113.1 49164 D 357244 CDS YP_001248114.1 148284024 5218369 51898..52512 1 NC_009488.1 ankyrin repeat-containing protein 52512 ank2A1 5218369 ank2A1 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248114.1 51898 D 357244 CDS YP_001248115.1 148284025 5218375 55786..56679 1 NC_009488.1 hypothetical protein 56679 5218375 OTBS_0057 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248115.1 55786 D 357244 CDS YP_001248116.1 148284026 5218381 61808..62143 1 NC_009488.1 hypothetical protein 62143 tchA 5218381 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248116.1 61808 D 357244 CDS YP_001248117.1 148284027 5218383 62691..63092 1 NC_009488.1 hypothetical protein 63092 tchB 5218383 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248117.1 62691 D 357244 CDS YP_001248118.1 148284028 5218384 63204..63668 1 NC_009488.1 conjugative pilus assembly protein 63668 traB 5218384 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248118.1 63204 D 357244 CDS YP_001248119.1 148284029 5218385 63668..63958 1 NC_009488.1 conjugative transfer protein 63958 traV 5218385 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248119.1 63668 D 357244 CDS YP_001248120.1 148284030 5218387 64853..65236 1 NC_009488.1 conjugative transfer protein 65236 trbC 5218387 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248120.1 64853 D 357244 CDS YP_001248121.1 148284031 5218389 67088..68359 1 NC_009488.1 ankyrin repeat-containing protein 68359 ank1D1 5218389 ank1D1 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248121.1 67088 D 357244 CDS YP_001248122.1 148284032 5218398 complement(72912..73979) 1 NC_009488.1 transposase and inactivated derivative 73979 tnE 5218398 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248122.1 72912 R 357244 CDS YP_001248123.1 148284033 5218400 74292..75254 1 NC_009488.1 transposase and inactivated derivative 75254 tnD 5218400 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248123.1 74292 D 357244 CDS YP_001248124.1 148284034 5218402 76112..78367 1 NC_009488.1 ankyrin repeat-containing protein 78367 ank1u1 5218402 ank1u1 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248124.1 76112 D 357244 CDS YP_001248125.1 148284035 5218405 83456..83854 1 NC_009488.1 conjugative transfer protein 83854 traD_Ti 5218405 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248125.1 83456 D 357244 CDS YP_001248126.1 148284036 5218406 83942..84520 1 NC_009488.1 hypothetical protein 84520 rhp4 5218406 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248126.1 83942 D 357244 CDS YP_001248127.1 148284037 5218407 complement(84598..85173) 1 NC_009488.1 spoT-like ppGpp hydrolase 85173 spoT2 5218407 spoT2 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248127.1 84598 R 357244 CDS YP_001248128.1 148284038 5218408 complement(85307..86908) 1 NC_009488.1 signal transduction histidine kinase 86908 hkp3 5218408 hkp3 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248128.1 85307 R 357244 CDS YP_001248129.1 148284039 5218409 complement(87421..87972) 1 NC_009488.1 hypothetical protein 87972 rhp5 5218409 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248129.1 87421 R 357244 CDS YP_001248130.1 148284040 5218411 complement(89265..89768) 1 NC_009488.1 ompA-like autotransporter 89768 rhp6 5218411 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248130.1 89265 R 357244 CDS YP_001248131.1 148284041 5218414 complement(91751..93301) 1 NC_009488.1 hypothetical protein 93301 tchD 5218414 tchD Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248131.1 91751 R 357244 CDS YP_001248132.1 148284042 5218416 95039..95590 1 NC_009488.1 ankyrin repeat-containing protein 95590 ank1C1 5218416 ank1C1 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248132.1 95039 D 357244 CDS YP_001248133.1 148284043 5218420 complement(99505..103890) 1 NC_009488.1 ompA-like, autotransporter 103890 rhp8 5218420 rhp8 Orientia tsutsugamushi str. Boryong ompA-like, autotransporter YP_001248133.1 99505 R 357244 CDS YP_001248134.1 148284044 5218424 complement(106687..106971) 1 NC_009488.1 hypothetical protein 106971 tpr1B1 5218424 tpr1B1 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248134.1 106687 R 357244 CDS YP_001248135.1 148284045 5218426 107369..107875 1 NC_009488.1 conjugative transfer protein 107875 traN 5218426 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248135.1 107369 D 357244 CDS YP_001248136.1 148284046 5218430 111862..112524 1 NC_009488.1 hypothetical protein 112524 tpr1B2 5218430 tpr1B2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248136.1 111862 D 357244 CDS YP_001248137.1 148284047 5218431 112521..114278 1 NC_009488.1 conjugative transfer protein 114278 traD_F 5218431 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248137.1 112521 D 357244 CDS YP_001248138.1 148284048 5218433 complement(114517..115368) 1 NC_009488.1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 115368 dapD 5218433 dapD Orientia tsutsugamushi str. Boryong 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_001248138.1 114517 R 357244 CDS YP_001248139.1 148284049 5218434 115467..116111 1 NC_009488.1 hypothetical protein 116111 5218434 OTBS_0116 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248139.1 115467 D 357244 CDS YP_001248140.1 148284050 5218437 117750..117974 1 NC_009488.1 hypothetical protein 117974 5218437 OTBS_0118 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248140.1 117750 D 357244 CDS YP_001248141.1 148284051 5218438 complement(118052..118648) 1 NC_009488.1 transposase and inactivated derivative 118648 tnD 5218438 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248141.1 118052 R 357244 CDS YP_001248142.1 148284052 5218439 complement(118669..118842) 1 NC_009488.1 hypothetical protein 118842 5218439 OTBS_0120 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248142.1 118669 R 357244 CDS YP_001248143.1 148284053 5218440 complement(119171..119287) 1 NC_009488.1 hypothetical protein 119287 tpr1A2 5218440 tpr1A2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248143.1 119171 R 357244 CDS YP_001248144.1 148284054 5218442 complement(120181..121431) 1 NC_009488.1 hypothetical protein 121431 5218442 OTBS_0123 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248144.1 120181 R 357244 CDS YP_001248145.1 148284055 5218445 complement(122333..122929) 1 NC_009488.1 site-specific DNA adenine methylase 122929 dam2 5218445 dam2 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248145.1 122333 R 357244 CDS YP_001248146.1 148284056 5218447 123239..124120 1 NC_009488.1 signal transduction histidine kinase 124120 hkp5 5218447 hkp5 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248146.1 123239 D 357244 CDS YP_001248147.1 148284057 5218454 130479..131486 1 NC_009488.1 hypothetical protein 131486 5218454 OTBS_0135 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248147.1 130479 D 357244 CDS YP_001248148.1 148284058 5218456 132097..132699 1 NC_009488.1 hypothetical protein 132699 5218456 OTBS_0137 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248148.1 132097 D 357244 CDS YP_001248149.1 148284059 5218457 complement(132728..134185) 1 NC_009488.1 hypothetical protein 134185 5218457 OTBS_0138 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248149.1 132728 R 357244 CDS YP_001248150.1 148284060 5218458 134193..134357 1 NC_009488.1 hypothetical protein 134357 5218458 OTBS_0139 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248150.1 134193 D 357244 CDS YP_001248151.1 148284061 5218459 134361..135110 1 NC_009488.1 triosephosphate isomerase 135110 tpiA 5218459 tpiA Orientia tsutsugamushi str. Boryong triosephosphate isomerase YP_001248151.1 134361 D 357244 CDS YP_001248152.1 148284062 5218460 135116..135409 1 NC_009488.1 preprotein translocase subunit SecG 135409 secG 5218460 secG Orientia tsutsugamushi str. Boryong preprotein translocase subunit SecG YP_001248152.1 135116 D 357244 CDS YP_001248153.1 148284063 5218462 complement(135907..137487) 1 NC_009488.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 137487 lysK 5218462 lysK Orientia tsutsugamushi str. Boryong lysyl-tRNA synthetase YP_001248153.1 135907 R 357244 CDS YP_001248154.1 148284064 5218463 137639..138187 1 NC_009488.1 disulfide bond formation protein 138187 dsbB 5218463 dsbB Orientia tsutsugamushi str. Boryong disulfide bond formation protein YP_001248154.1 137639 D 357244 CDS YP_001248155.1 148284065 5218464 138150..138695 1 NC_009488.1 ubiquinone biosynthesis protein 138695 coq7 5218464 coq7 Orientia tsutsugamushi str. Boryong ubiquinone biosynthesis protein YP_001248155.1 138150 D 357244 CDS YP_001248156.1 148284066 5218465 138771..139463 1 NC_009488.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 139463 psd 5218465 psd Orientia tsutsugamushi str. Boryong phosphatidylserine decarboxylase YP_001248156.1 138771 D 357244 CDS YP_001248157.1 148284067 5218466 139512..140288 1 NC_009488.1 CDP-diacylglycerol--serineO- phosphatidyltransferase 140288 pssA 5218466 pssA Orientia tsutsugamushi str. Boryong CDP-diacylglycerol--serineO- phosphatidyltransferase YP_001248157.1 139512 D 357244 CDS YP_001248158.1 148284068 5218467 140335..140820 1 NC_009488.1 multisubunit Na+/H+ antiporter, MnhE subunit 140820 mnhE 5218467 mnhE Orientia tsutsugamushi str. Boryong multisubunit Na+/H+ antiporter, MnhE subunit YP_001248158.1 140335 D 357244 CDS YP_001248159.1 148284069 5218468 141101..143929 1 NC_009488.1 hypothetical protein 143929 5218468 OTBS_0148 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248159.1 141101 D 357244 CDS YP_001248160.1 148284070 5218469 complement(144106..145782) 1 NC_009488.1 hypothetical protein 145782 5218469 OTBS_0149 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248160.1 144106 R 357244 CDS YP_001248161.1 148284071 5218470 complement(145851..146729) 1 NC_009488.1 succinyl-CoA synthetase, alpha chain 146729 sucD 5218470 sucD Orientia tsutsugamushi str. Boryong succinyl-CoA synthetase, alpha chain YP_001248161.1 145851 R 357244 CDS YP_001248162.1 148284072 5218471 complement(146744..147904) 1 NC_009488.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 147904 sucC 5218471 sucC Orientia tsutsugamushi str. Boryong succinyl-CoA synthetase subunit beta YP_001248162.1 146744 R 357244 CDS YP_001248163.1 148284073 5218472 complement(147961..149124) 1 NC_009488.1 2-polyprenyl-6-methoxyphenol 4-hydroxylase 149124 ubiH 5218472 ubiH Orientia tsutsugamushi str. Boryong 2-polyprenyl-6-methoxyphenol 4-hydroxylase YP_001248163.1 147961 R 357244 CDS YP_001248164.1 148284074 5218474 complement(149534..150118) 1 NC_009488.1 hypothetical protein 150118 5218474 OTBS_0153 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248164.1 149534 R 357244 CDS YP_001248165.1 148284075 5218475 complement(150260..153463) 1 NC_009488.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 153463 ileS 5218475 ileS Orientia tsutsugamushi str. Boryong isoleucyl-tRNA synthetase YP_001248165.1 150260 R 357244 CDS YP_001248166.1 148284076 5218476 complement(153500..154117) 1 NC_009488.1 hypothetical protein 154117 5218476 OTBS_0155 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248166.1 153500 R 357244 CDS YP_001248167.1 148284077 5218477 154276..154482 1 NC_009488.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 154482 rpsU 5218477 rpsU Orientia tsutsugamushi str. Boryong 30S ribosomal protein S21 YP_001248167.1 154276 D 357244 CDS YP_001248168.1 148284078 5218478 complement(154511..154951) 1 NC_009488.1 DNA polymerase III chi subunit 154951 holC 5218478 holC Orientia tsutsugamushi str. Boryong DNA polymerase III chi subunit YP_001248168.1 154511 R 357244 CDS YP_001248169.1 148284079 5218479 155109..156374 1 NC_009488.1 proline/betaine transporter 156374 proP 5218479 proP Orientia tsutsugamushi str. Boryong proline/betaine transporter YP_001248169.1 155109 D 357244 CDS YP_001248170.1 148284080 5218481 157235..157942 1 NC_009488.1 hypothetical protein 157942 5218481 OTBS_0160 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248170.1 157235 D 357244 CDS YP_001248171.1 148284081 5218482 158021..159256 1 NC_009488.1 ankyrin repeat-containing protein 159256 ank2A2 5218482 ank2A2 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248171.1 158021 D 357244 CDS YP_001248172.1 148284082 5218483 complement(159357..161579) 1 NC_009488.1 polynucleotide phosphorylase 161579 pnp 5218483 pnp Orientia tsutsugamushi str. Boryong polynucleotide phosphorylase YP_001248172.1 159357 R 357244 CDS YP_001248173.1 148284083 5218484 complement(161898..162167) 1 NC_009488.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 162167 rpsO 5218484 rpsO Orientia tsutsugamushi str. Boryong 30S ribosomal protein S15 YP_001248173.1 161898 R 357244 CDS YP_001248174.1 148284084 5218485 complement(162191..162958) 1 NC_009488.1 tRNA pseudouridine synthase B 162958 truB 5218485 truB Orientia tsutsugamushi str. Boryong tRNA pseudouridine synthase B YP_001248174.1 162191 R 357244 CDS YP_001248175.1 148284085 5218489 complement(164424..164864) 1 NC_009488.1 transcriptional regulator 164864 5218489 OTBS_0168 Orientia tsutsugamushi str. Boryong transcriptional regulator YP_001248175.1 164424 R 357244 CDS YP_001248176.1 148284086 5218491 complement(165477..165764) 1 NC_009488.1 hypothetical protein 165764 5218491 OTBS_0170 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248176.1 165477 R 357244 CDS YP_001248177.1 148284087 5218495 complement(167446..167715) 1 NC_009488.1 conjugative transfer protein 167715 traC 5218495 traC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248177.1 167446 R 357244 CDS YP_001248178.1 148284088 5218500 complement(171793..173034) 1 NC_009488.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 173034 tyrS 5218500 tyrS Orientia tsutsugamushi str. Boryong tyrosyl-tRNA synthetase YP_001248178.1 171793 R 357244 CDS YP_001248179.1 148284089 5218502 174502..174816 1 NC_009488.1 hypothetical protein 174816 tchB 5218502 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248179.1 174502 D 357244 CDS YP_001248180.1 148284090 5218503 174810..175049 1 NC_009488.1 conjugative transfer protein 175049 traV 5218503 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248180.1 174810 D 357244 CDS YP_001248181.1 148284091 5218507 complement(176307..177224) 1 NC_009488.1 periplasmic serine proteases (ClpP class) 177224 sppA 5218507 sppA Orientia tsutsugamushi str. Boryong periplasmic serine proteases (ClpP class) YP_001248181.1 176307 R 357244 CDS YP_001248182.1 148284092 5218508 177515..178864 1 NC_009488.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 178864 miaB 5218508 miaB Orientia tsutsugamushi str. Boryong (dimethylallyl)adenosine tRNA methylthiotransferase YP_001248182.1 177515 D 357244 CDS YP_001248183.1 148284093 5218509 179019..179864 1 NC_009488.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 179864 hemF 5218509 hemF Orientia tsutsugamushi str. Boryong coproporphyrinogen III oxidase YP_001248183.1 179019 D 357244 CDS YP_001248184.1 148284094 5218510 180005..180346 1 NC_009488.1 hypothetical protein 180346 5218510 OTBS_0189 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248184.1 180005 D 357244 CDS YP_001248185.1 148284095 5218514 181605..181814 1 NC_009488.1 hypothetical protein 181814 5218514 OTBS_0193 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248185.1 181605 D 357244 CDS YP_001248186.1 148284096 5218515 complement(181891..182073) 1 NC_009488.1 hypothetical protein 182073 5218515 OTBS_0194 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248186.1 181891 R 357244 CDS YP_001248187.1 148284097 5218520 complement(184608..184775) 1 NC_009488.1 hypothetical protein 184775 5218520 OTBS_0199 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248187.1 184608 R 357244 CDS YP_001248188.1 148284098 5218521 complement(184912..185133) 1 NC_009488.1 hypothetical protein 185133 5218521 OTBS_0200 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248188.1 184912 R 357244 CDS YP_001248189.1 148284099 5218523 complement(185411..185635) 1 NC_009488.1 RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 185635 rpmE 5218523 rpmE Orientia tsutsugamushi str. Boryong 50S ribosomal protein L31 YP_001248189.1 185411 R 357244 CDS YP_001248190.1 148284100 5218524 complement(185645..185935) 1 NC_009488.1 required for 70S ribosome assembly; 50S ribosomal protein L28 185935 rpmB 5218524 rpmB Orientia tsutsugamushi str. Boryong 50S ribosomal protein L28 YP_001248190.1 185645 R 357244 CDS YP_001248191.1 148284101 5218525 186178..187050 1 NC_009488.1 permeases-like integral membrane protein 187050 rarD 5218525 rarD Orientia tsutsugamushi str. Boryong permeases-like integral membrane protein YP_001248191.1 186178 D 357244 CDS YP_001248192.1 148284102 5218526 187314..188324 1 NC_009488.1 proline/betaine transporter 188324 proP 5218526 proP Orientia tsutsugamushi str. Boryong proline/betaine transporter YP_001248192.1 187314 D 357244 CDS YP_001248193.1 148284103 5218527 complement(190158..191369) 1 NC_009488.1 penicillin-binding protein 4* 191369 pbpE 5218527 pbpE Orientia tsutsugamushi str. Boryong penicillin-binding protein 4* YP_001248193.1 190158 R 357244 CDS YP_001248194.1 148284104 5218528 complement(191395..193188) 1 NC_009488.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 193188 aspS 5218528 aspS Orientia tsutsugamushi str. Boryong aspartyl-tRNA synthetase YP_001248194.1 191395 R 357244 CDS YP_001248195.1 148284105 5218529 complement(193466..197656) 1 NC_009488.1 DNA-directed RNA polymerase beta prime chain 197656 rpoC 5218529 rpoC Orientia tsutsugamushi str. Boryong DNA-directed RNA polymerase beta prime chain YP_001248195.1 193466 R 357244 CDS YP_001248196.1 148284106 5218530 complement(197772..201905) 1 NC_009488.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 201905 rpoB 5218530 rpoB Orientia tsutsugamushi str. Boryong DNA-directed RNA polymerase subunit beta YP_001248196.1 197772 R 357244 CDS YP_001248197.1 148284107 5218531 complement(202221..202610) 1 NC_009488.1 50S ribosomal protein L7/L12 202610 rplL 5218531 rplL Orientia tsutsugamushi str. Boryong 50S ribosomal protein L7/L12 YP_001248197.1 202221 R 357244 CDS YP_001248198.1 148284108 5218532 complement(202632..203141) 1 NC_009488.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 203141 rplJ 5218532 rplJ Orientia tsutsugamushi str. Boryong 50S ribosomal protein L10 YP_001248198.1 202632 R 357244 CDS YP_001248199.1 148284109 5218533 complement(203145..203891) 1 NC_009488.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 203891 rplA 5218533 rplA Orientia tsutsugamushi str. Boryong 50S ribosomal protein L1 YP_001248199.1 203145 R 357244 CDS YP_001248200.1 148284110 5218534 complement(203895..204341) 1 NC_009488.1 50S ribosomal protein L11 204341 rplK 5218534 rplK Orientia tsutsugamushi str. Boryong 50S ribosomal protein L11 YP_001248200.1 203895 R 357244 CDS YP_001248201.1 148284111 5218535 complement(204381..204935) 1 NC_009488.1 transcription antitermination protein 204935 nusG 5218535 nusG Orientia tsutsugamushi str. Boryong transcription antitermination protein YP_001248201.1 204381 R 357244 CDS YP_001248202.1 148284112 5218536 complement(204960..205169) 1 NC_009488.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 205169 secE 5218536 secE Orientia tsutsugamushi str. Boryong preprotein translocase subunit SecE YP_001248202.1 204960 R 357244 CDS YP_001248203.1 148284113 5218538 complement(205419..206603) 1 NC_009488.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 206603 tuf 5218538 tuf Orientia tsutsugamushi str. Boryong elongation factor Tu YP_001248203.1 205419 R 357244 CDS YP_001248204.1 148284114 5218539 complement(206775..207539) 1 NC_009488.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 207539 plsC 5218539 plsC Orientia tsutsugamushi str. Boryong 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001248204.1 206775 R 357244 CDS YP_001248205.1 148284115 5218540 complement(207656..208267) 1 NC_009488.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 208267 recR 5218540 recR Orientia tsutsugamushi str. Boryong recombination protein RecR YP_001248205.1 207656 R 357244 CDS YP_001248206.1 148284116 5218541 complement(208356..208892) 1 NC_009488.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 208892 ispZ 5218541 ispZ Orientia tsutsugamushi str. Boryong intracellular septation protein A YP_001248206.1 208356 R 357244 CDS YP_001248207.1 148284117 5218542 complement(208886..209734) 1 NC_009488.1 hypothetical protein 209734 5218542 OTBS_0219 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248207.1 208886 R 357244 CDS YP_001248208.1 148284118 5218543 complement(209763..210128) 1 NC_009488.1 hypothetical protein 210128 5218543 OTBS_0220 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248208.1 209763 R 357244 CDS YP_001248209.1 148284119 5218546 complement(210594..211826) 1 NC_009488.1 hypothetical protein 211826 5218546 OTBS_0222 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248209.1 210594 R 357244 CDS YP_001248210.1 148284120 5218547 complement(212013..212744) 1 NC_009488.1 glutamine ABC transporter ATP-binding protein 212744 glnQ 5218547 glnQ Orientia tsutsugamushi str. Boryong glutamine ABC transporter ATP-binding protein YP_001248210.1 212013 R 357244 CDS YP_001248211.1 148284121 5218548 complement(212737..213363) 1 NC_009488.1 amino acid ABC transporter permease 213363 yqiY 5218548 yqiY Orientia tsutsugamushi str. Boryong amino acid ABC transporter permease YP_001248211.1 212737 R 357244 CDS YP_001248212.1 148284122 5218551 complement(215466..217892) 1 NC_009488.1 hypothetical protein 217892 5218551 OTBS_0227 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248212.1 215466 R 357244 CDS YP_001248213.1 148284123 5218556 complement(222668..224329) 1 NC_009488.1 conjugative transfer protein 224329 traN 5218556 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248213.1 222668 R 357244 CDS YP_001248214.1 148284124 5218557 complement(224352..224672) 1 NC_009488.1 conjugative transfer protein 224672 trbC 5218557 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248214.1 224352 R 357244 CDS YP_001248215.1 148284125 5218560 complement(226784..227149) 1 NC_009488.1 conjugative transfer protein 227149 traC 5218560 traC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248215.1 226784 R 357244 CDS YP_001248216.1 148284126 5218564 complement(230272..232314) 1 NC_009488.1 hypothetical protein 232314 rhp2 5218564 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248216.1 230272 R 357244 CDS YP_001248217.1 148284127 5218567 complement(233690..235267) 1 NC_009488.1 signal transduction histidine kinase 235267 hkp6 5218567 hkp6 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248217.1 233690 R 357244 CDS YP_001248218.1 148284128 5218568 complement(235780..236331) 1 NC_009488.1 hypothetical protein 236331 rhp5 5218568 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248218.1 235780 R 357244 CDS YP_001248219.1 148284129 5218569 236807..237637 1 NC_009488.1 site-specific DNA adenine methylase 237637 dam3 5218569 dam3 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248219.1 236807 D 357244 CDS YP_001248220.1 148284130 5218570 complement(238025..238777) 1 NC_009488.1 ankyrin repeat-containing protein 238777 ank1u2 5218570 ank1u2 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248220.1 238025 R 357244 CDS YP_001248221.1 148284131 5218574 242399..242623 1 NC_009488.1 translation initiation factor IF-1 242623 infA 5218574 infA Orientia tsutsugamushi str. Boryong translation initiation factor IF-1 YP_001248221.1 242399 D 357244 CDS YP_001248222.1 148284132 5218575 242649..243266 1 NC_009488.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 243266 maf 5218575 maf Orientia tsutsugamushi str. Boryong Maf-like protein YP_001248222.1 242649 D 357244 CDS YP_001248223.1 148284133 5218576 243394..244143 1 NC_009488.1 hypothetical protein 244143 5218576 OTBS_0251 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248223.1 243394 D 357244 CDS YP_001248224.1 148284134 5218577 244244..246961 1 NC_009488.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 246961 gyrA 5218577 gyrA Orientia tsutsugamushi str. Boryong DNA gyrase subunit A YP_001248224.1 244244 D 357244 CDS YP_001248225.1 148284135 5218578 246995..248275 1 NC_009488.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 248275 glyA 5218578 glyA Orientia tsutsugamushi str. Boryong serine hydroxymethyltransferase YP_001248225.1 246995 D 357244 CDS YP_001248226.1 148284136 5218579 complement(248963..251455) 1 NC_009488.1 hypothetical protein 251455 5218579 OTBS_0254 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248226.1 248963 R 357244 CDS YP_001248227.1 148284137 5218581 complement(251842..252099) 1 NC_009488.1 ribonuclease P protein 252099 rnpA 5218581 rnpA Orientia tsutsugamushi str. Boryong ribonuclease P protein YP_001248227.1 251842 R 357244 CDS YP_001248228.1 148284138 5218582 complement(252382..252516) 1 NC_009488.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 252516 rpmH 5218582 rpmH Orientia tsutsugamushi str. Boryong 50S ribosomal protein L34 YP_001248228.1 252382 R 357244 CDS YP_001248229.1 148284139 5218584 253296..254090 1 NC_009488.1 cytochrome c1, heme protein precursor 254090 fbcH 5218584 fbcH Orientia tsutsugamushi str. Boryong cytochrome c1, heme protein precursor YP_001248229.1 253296 D 357244 CDS YP_001248230.1 148284140 5218585 complement(254599..255354) 1 NC_009488.1 tRNA nucleotidyltransferase 255354 rph 5218585 rph Orientia tsutsugamushi str. Boryong tRNA nucleotidyltransferase YP_001248230.1 254599 R 357244 CDS YP_001248231.1 148284141 5218586 255484..256080 1 NC_009488.1 heat shock molecular chaperone protein 256080 grpE 5218586 grpE Orientia tsutsugamushi str. Boryong heat shock molecular chaperone protein YP_001248231.1 255484 D 357244 CDS YP_001248232.1 148284142 5218590 complement(257219..257851) 1 NC_009488.1 ribonuclease D 257851 rnd 5218590 rnd Orientia tsutsugamushi str. Boryong ribonuclease D YP_001248232.1 257219 R 357244 CDS YP_001248233.1 148284143 5218591 complement(257858..258157) 1 NC_009488.1 hypothetical protein 258157 5218591 OTBS_0266 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248233.1 257858 R 357244 CDS YP_001248234.1 148284144 5218592 complement(258165..258821) 1 NC_009488.1 phosphatidate cytidylyltransferase 258821 cdsA 5218592 cdsA Orientia tsutsugamushi str. Boryong phosphatidate cytidylyltransferase YP_001248234.1 258165 R 357244 CDS YP_001248235.1 148284145 5218593 complement(258818..259513) 1 NC_009488.1 UDP pyrophosphate synthetase 259513 uppS 5218593 uppS Orientia tsutsugamushi str. Boryong UDP pyrophosphate synthetase YP_001248235.1 258818 R 357244 CDS YP_001248236.1 148284146 5218594 259688..261493 1 NC_009488.1 ABC transporter, ATP-binding protein 261493 abcZ 5218594 abcZ Orientia tsutsugamushi str. Boryong ABC transporter, ATP-binding protein YP_001248236.1 259688 D 357244 CDS YP_001248237.1 148284147 5218597 complement(262775..266479) 1 NC_009488.1 DNA polymerase III alpha chain 266479 dnaE 5218597 dnaE Orientia tsutsugamushi str. Boryong DNA polymerase III alpha chain YP_001248237.1 262775 R 357244 CDS YP_001248238.1 148284148 5218598 complement(266469..269033) 1 NC_009488.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 269033 valS 5218598 valS Orientia tsutsugamushi str. Boryong valyl-tRNA synthetase YP_001248238.1 266469 R 357244 CDS YP_001248239.1 148284149 5218599 269063..269941 1 NC_009488.1 UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 269941 ubiA 5218599 ubiA Orientia tsutsugamushi str. Boryong 4-hydroxybenzoate polyprenyltransferase YP_001248239.1 269063 D 357244 CDS YP_001248240.1 148284150 5218600 complement(270048..270785) 1 NC_009488.1 hypothetical protein 270785 5218600 OTBS_0275 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248240.1 270048 R 357244 CDS YP_001248241.1 148284151 5218601 complement(270791..270967) 1 NC_009488.1 hypothetical protein 270967 5218601 OTBS_0276 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248241.1 270791 R 357244 CDS YP_001248242.1 148284152 5218602 271149..272147 1 NC_009488.1 microcin C7 self-immunity protein 272147 mccF 5218602 mccF Orientia tsutsugamushi str. Boryong microcin C7 self-immunity protein YP_001248242.1 271149 D 357244 CDS YP_001248243.1 148284153 5218607 complement(275561..276760) 1 NC_009488.1 hypothetical protein 276760 5218607 OTBS_0282 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248243.1 275561 R 357244 CDS YP_001248244.1 148284154 5218608 complement(277193..277945) 1 NC_009488.1 cytochrome c oxidase polypeptide II 277945 coxB 5218608 coxB Orientia tsutsugamushi str. Boryong cytochrome c oxidase polypeptide II YP_001248244.1 277193 R 357244 CDS YP_001248245.1 148284155 5218609 complement(278100..278576) 1 NC_009488.1 hypothetical protein 278576 5218609 OTBS_0284 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248245.1 278100 R 357244 CDS YP_001248246.1 148284156 5218610 279441..281657 1 NC_009488.1 conjugal transfer protein 281657 TrbL/VirB6 5218610 TrbL/VirB6 Orientia tsutsugamushi str. Boryong conjugal transfer protein YP_001248246.1 279441 D 357244 CDS YP_001248247.1 148284157 5218614 complement(283403..283642) 1 NC_009488.1 hypothetical protein 283642 5218614 OTBS_0289 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248247.1 283403 R 357244 CDS YP_001248248.1 148284158 5218615 complement(283817..284191) 1 NC_009488.1 hypothetical protein 284191 tpr1B4 5218615 tpr1B4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248248.1 283817 R 357244 CDS YP_001248249.1 148284159 5218617 complement(285165..288077) 1 NC_009488.1 excinuclease ABC subunit A 288077 uvrA 5218617 uvrA Orientia tsutsugamushi str. Boryong excinuclease ABC subunit A YP_001248249.1 285165 R 357244 CDS YP_001248250.1 148284160 5218620 289416..290318 1 NC_009488.1 transposase and inactivated derivative 290318 tnE 5218620 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248250.1 289416 D 357244 CDS YP_001248251.1 148284161 5218623 292823..292987 1 NC_009488.1 ankyrin repeat-containing protein 292987 ank1C2 5218623 ank1C2 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248251.1 292823 D 357244 CDS YP_001248252.1 148284162 5218627 296218..296598 1 NC_009488.1 hypothetical protein 296598 5218627 OTBS_0302 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248252.1 296218 D 357244 CDS YP_001248253.1 148284163 5218628 complement(296635..298149) 1 NC_009488.1 virlence factor, integral membrane protein 298149 mviN 5218628 mviN Orientia tsutsugamushi str. Boryong virlence factor, integral membrane protein YP_001248253.1 296635 R 357244 CDS YP_001248254.1 148284164 5218630 299470..301224 1 NC_009488.1 alkaline protease secretion, ATP-binding protein 301224 aprD 5218630 aprD Orientia tsutsugamushi str. Boryong alkaline protease secretion, ATP-binding protein YP_001248254.1 299470 D 357244 CDS YP_001248255.1 148284165 5218631 301250..302806 1 NC_009488.1 alkaline protease secretion protein 302806 aprE 5218631 aprE Orientia tsutsugamushi str. Boryong alkaline protease secretion protein YP_001248255.1 301250 D 357244 CDS YP_001248256.1 148284166 5218637 307658..309190 1 NC_009488.1 ATP/ADP translocase 309190 tlc 5218637 tlc Orientia tsutsugamushi str. Boryong ATP/ADP translocase YP_001248256.1 307658 D 357244 CDS YP_001248257.1 148284167 5218638 309345..310889 1 NC_009488.1 ATP/ADP translocase 310889 tlc 5218638 tlc Orientia tsutsugamushi str. Boryong ATP/ADP translocase YP_001248257.1 309345 D 357244 CDS YP_001248258.1 148284168 5218639 310889..312694 1 NC_009488.1 hypothetical protein 312694 5218639 OTBS_0314 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248258.1 310889 D 357244 CDS YP_001248259.1 148284169 5218640 312714..313730 1 NC_009488.1 octaprenyl-diphosphate synthase 313730 ispB 5218640 ispB Orientia tsutsugamushi str. Boryong octaprenyl-diphosphate synthase YP_001248259.1 312714 D 357244 CDS YP_001248260.1 148284170 5218641 314296..314559 1 NC_009488.1 conjugative transfer protein 314559 traC 5218641 traC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248260.1 314296 D 357244 CDS YP_001248261.1 148284171 5218643 315145..315306 1 NC_009488.1 hypothetical protein 315306 tchE 5218643 tchE Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248261.1 315145 D 357244 CDS YP_001248262.1 148284172 5218647 317482..318444 1 NC_009488.1 transposase and inactivated derivative 318444 tnD 5218647 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248262.1 317482 D 357244 CDS YP_001248263.1 148284173 5218654 324523..324948 1 NC_009488.1 protein associated with Co2+ and Mg2+ efflux; ApaG 324948 apaG 5218654 apaG Orientia tsutsugamushi str. Boryong ApaG YP_001248263.1 324523 D 357244 CDS YP_001248264.1 148284174 5218655 complement(325334..326803) 1 NC_009488.1 involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD 326803 pleD 5218655 pleD Orientia tsutsugamushi str. Boryong response regulator PleD YP_001248264.1 325334 R 357244 CDS YP_001248265.1 148284175 5218657 327285..327848 1 NC_009488.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 327848 ubiX 5218657 ubiX Orientia tsutsugamushi str. Boryong 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001248265.1 327285 D 357244 CDS YP_001248266.1 148284176 5218658 complement(327898..328812) 1 NC_009488.1 Mg2+/Co2+ transporter 328812 corC 5218658 corC Orientia tsutsugamushi str. Boryong Mg2+/Co2+ transporter YP_001248266.1 327898 R 357244 CDS YP_001248267.1 148284177 5218659 complement(328825..329328) 1 NC_009488.1 metalloprotease 329328 5218659 OTBS_0333 Orientia tsutsugamushi str. Boryong metalloprotease YP_001248267.1 328825 R 357244 CDS YP_001248268.1 148284178 5218662 complement(330765..331703) 1 NC_009488.1 cell division ABC transporter, periplasmic substrate-binding protein 331703 ftsY 5218662 ftsY Orientia tsutsugamushi str. Boryong cell division ABC transporter, periplasmic substrate-binding protein YP_001248268.1 330765 R 357244 CDS YP_001248269.1 148284179 5218663 331813..332202 1 NC_009488.1 hypothetical protein 332202 5218663 OTBS_0337 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248269.1 331813 D 357244 CDS YP_001248270.1 148284180 5218664 complement(332462..333223) 1 NC_009488.1 conjugal transfer protein 333223 trbG/virB9 5218664 trbG/virB9 Orientia tsutsugamushi str. Boryong conjugal transfer protein YP_001248270.1 332462 R 357244 CDS YP_001248271.1 148284181 5218665 complement(333213..333914) 1 NC_009488.1 type IV secretion system protein 333914 virB8 5218665 virB8 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001248271.1 333213 R 357244 CDS YP_001248272.1 148284182 5218668 complement(337492..338394) 1 NC_009488.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 338394 thyX 5218668 thyX Orientia tsutsugamushi str. Boryong FAD-dependent thymidylate synthase YP_001248272.1 337492 R 357244 CDS YP_001248273.1 148284183 5218669 complement(338438..338941) 1 NC_009488.1 competence/damaged related protein 338941 cinA 5218669 cinA Orientia tsutsugamushi str. Boryong competence/damaged related protein YP_001248273.1 338438 R 357244 CDS YP_001248274.1 148284184 5218670 complement(339007..339609) 1 NC_009488.1 phosphatidylglycerophosphatase 339609 pgpA 5218670 pgpA Orientia tsutsugamushi str. Boryong phosphatidylglycerophosphatase YP_001248274.1 339007 R 357244 CDS YP_001248275.1 148284185 5218674 341176..341490 1 NC_009488.1 hypothetical protein 341490 rhp4 5218674 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248275.1 341176 D 357244 CDS YP_001248276.1 148284186 5218676 341834..342880 1 NC_009488.1 permease 342880 perM 5218676 perM Orientia tsutsugamushi str. Boryong permease YP_001248276.1 341834 D 357244 CDS YP_001248277.1 148284187 5218677 complement(342890..344101) 1 NC_009488.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase 344101 hemA 5218677 hemA Orientia tsutsugamushi str. Boryong 5-aminolevulinate synthase YP_001248277.1 342890 R 357244 CDS YP_001248278.1 148284188 5218678 complement(344134..346188) 1 NC_009488.1 oligopeptidase B 346188 ptrB 5218678 ptrB Orientia tsutsugamushi str. Boryong oligopeptidase B YP_001248278.1 344134 R 357244 CDS YP_001248279.1 148284189 5218679 complement(346254..346526) 1 NC_009488.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 346526 rpsT 5218679 rpsT Orientia tsutsugamushi str. Boryong 30S ribosomal protein S20 YP_001248279.1 346254 R 357244 CDS YP_001248280.1 148284190 5218680 complement(346608..347045) 1 NC_009488.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 347045 rplQ 5218680 rplQ Orientia tsutsugamushi str. Boryong 50S ribosomal protein L17 YP_001248280.1 346608 R 357244 CDS YP_001248281.1 148284191 5218681 complement(347064..348092) 1 NC_009488.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 348092 rpoA 5218681 rpoA Orientia tsutsugamushi str. Boryong DNA-directed RNA polymerase subunit alpha YP_001248281.1 347064 R 357244 CDS YP_001248282.1 148284192 5218682 complement(348141..348521) 1 NC_009488.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 348521 rpsK 5218682 rpsK Orientia tsutsugamushi str. Boryong 30S ribosomal protein S11 YP_001248282.1 348141 R 357244 CDS YP_001248283.1 148284193 5218683 complement(348531..348908) 1 NC_009488.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 348908 rpsM 5218683 rpsM Orientia tsutsugamushi str. Boryong 30S ribosomal protein S13 YP_001248283.1 348531 R 357244 CDS YP_001248284.1 148284194 5218684 complement(348988..349620) 1 NC_009488.1 adenylate kinase 349620 adk 5218684 adk Orientia tsutsugamushi str. Boryong adenylate kinase YP_001248284.1 348988 R 357244 CDS YP_001248285.1 148284195 5218685 complement(349629..350936) 1 NC_009488.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 350936 secY 5218685 secY Orientia tsutsugamushi str. Boryong preprotein translocase subunit SecY YP_001248285.1 349629 R 357244 CDS YP_001248286.1 148284196 5218686 complement(350938..351429) 1 NC_009488.1 50S ribosomal protein L15 351429 rplO 5218686 rplO Orientia tsutsugamushi str. Boryong 50S ribosomal protein L15 YP_001248286.1 350938 R 357244 CDS YP_001248287.1 148284197 5218687 complement(351665..352183) 1 NC_009488.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 352183 rpsE 5218687 rpsE Orientia tsutsugamushi str. Boryong 30S ribosomal protein S5 YP_001248287.1 351665 R 357244 CDS YP_001248288.1 148284198 5218688 complement(352204..352578) 1 NC_009488.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 352578 rplR 5218688 rplR Orientia tsutsugamushi str. Boryong 50S ribosomal protein L18 YP_001248288.1 352204 R 357244 CDS YP_001248289.1 148284199 5218689 complement(352592..353125) 1 NC_009488.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 353125 rplF 5218689 rplF Orientia tsutsugamushi str. Boryong 50S ribosomal protein L6 YP_001248289.1 352592 R 357244 CDS YP_001248290.1 148284200 5218690 complement(353147..353548) 1 NC_009488.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 353548 rpsH 5218690 rpsH Orientia tsutsugamushi str. Boryong 30S ribosomal protein S8 YP_001248290.1 353147 R 357244 CDS YP_001248291.1 148284201 5218691 complement(353571..353876) 1 NC_009488.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 353876 rpsN 5218691 rpsN Orientia tsutsugamushi str. Boryong 30S ribosomal protein S14 YP_001248291.1 353571 R 357244 CDS YP_001248292.1 148284202 5218692 complement(353895..354464) 1 NC_009488.1 50S ribosomal protein L5 354464 rplE 5218692 rplE Orientia tsutsugamushi str. Boryong 50S ribosomal protein L5 YP_001248292.1 353895 R 357244 CDS YP_001248293.1 148284203 5218693 complement(354477..354797) 1 NC_009488.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 354797 rplX 5218693 rplX Orientia tsutsugamushi str. Boryong 50S ribosomal protein L24 YP_001248293.1 354477 R 357244 CDS YP_001248294.1 148284204 5218694 complement(354799..355167) 1 NC_009488.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 355167 rplN 5218694 rplN Orientia tsutsugamushi str. Boryong 50S ribosomal protein L14 YP_001248294.1 354799 R 357244 CDS YP_001248295.1 148284205 5218695 complement(355263..355502) 1 NC_009488.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 355502 rpsQ 5218695 rpsQ Orientia tsutsugamushi str. Boryong 30S ribosomal protein S17 YP_001248295.1 355263 R 357244 CDS YP_001248296.1 148284206 5218696 complement(355503..355724) 1 NC_009488.1 50S ribosomal protein L29 355724 rpmC 5218696 rpmC Orientia tsutsugamushi str. Boryong 50S ribosomal protein L29 YP_001248296.1 355503 R 357244 CDS YP_001248297.1 148284207 5218697 complement(355717..356127) 1 NC_009488.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 356127 rplP 5218697 rplP Orientia tsutsugamushi str. Boryong 50S ribosomal protein L16 YP_001248297.1 355717 R 357244 CDS YP_001248298.1 148284208 5218698 complement(356156..356812) 1 NC_009488.1 30S ribosomal protein S3 356812 rpsC 5218698 rpsC Orientia tsutsugamushi str. Boryong 30S ribosomal protein S3 YP_001248298.1 356156 R 357244 CDS YP_001248299.1 148284209 5218699 complement(356828..357178) 1 NC_009488.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 357178 rplV 5218699 rplV Orientia tsutsugamushi str. Boryong 50S ribosomal protein L22 YP_001248299.1 356828 R 357244 CDS YP_001248300.1 148284210 5218700 complement(357180..357458) 1 NC_009488.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 357458 rpsS 5218700 rpsS Orientia tsutsugamushi str. Boryong 30S ribosomal protein S19 YP_001248300.1 357180 R 357244 CDS YP_001248301.1 148284211 5218701 complement(357482..358303) 1 NC_009488.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 358303 rplB 5218701 rplB Orientia tsutsugamushi str. Boryong 50S ribosomal protein L2 YP_001248301.1 357482 R 357244 CDS YP_001248302.1 148284212 5218702 complement(358304..358600) 1 NC_009488.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 358600 rplW 5218702 rplW Orientia tsutsugamushi str. Boryong 50S ribosomal protein L23 YP_001248302.1 358304 R 357244 CDS YP_001248303.1 148284213 5218703 complement(358597..359229) 1 NC_009488.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 359229 rplD 5218703 rplD Orientia tsutsugamushi str. Boryong 50S ribosomal protein L4 YP_001248303.1 358597 R 357244 CDS YP_001248304.1 148284214 5218704 complement(359244..359933) 1 NC_009488.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 359933 rplC 5218704 rplC Orientia tsutsugamushi str. Boryong 50S ribosomal protein L3 YP_001248304.1 359244 R 357244 CDS YP_001248305.1 148284215 5218705 complement(359911..360225) 1 NC_009488.1 30S ribosomal protein S10 360225 rpsJ 5218705 rpsJ Orientia tsutsugamushi str. Boryong 30S ribosomal protein S10 YP_001248305.1 359911 R 357244 CDS YP_001248306.2 229328283 5218706 complement(360261..361445) 1 NC_009488.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 361445 tuf 5218706 tuf Orientia tsutsugamushi str. Boryong elongation factor Tu YP_001248306.2 360261 R 357244 CDS YP_001248307.1 148284217 5218709 361910..362638 1 NC_009488.1 tRNA/rRNA methyltransferase 362638 spoU 5218709 spoU Orientia tsutsugamushi str. Boryong tRNA/rRNA methyltransferase YP_001248307.1 361910 D 357244 CDS YP_001248308.1 148284218 5218710 362733..363803 1 NC_009488.1 recombinase A 363803 recA 5218710 recA Orientia tsutsugamushi str. Boryong recombinase A YP_001248308.1 362733 D 357244 CDS YP_001248309.1 148284219 5218711 363797..364522 1 NC_009488.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 364522 fabG 5218711 fabG Orientia tsutsugamushi str. Boryong 3-ketoacyl-ACP reductase YP_001248309.1 363797 D 357244 CDS YP_001248310.1 148284220 5218712 364644..365030 1 NC_009488.1 acyl carrier protein 365030 acpP 5218712 acpP Orientia tsutsugamushi str. Boryong acyl carrier protein YP_001248310.1 364644 D 357244 CDS YP_001248311.1 148284221 5218713 365120..366391 1 NC_009488.1 3-oxoacyl-ACP synthase 366391 fabF 5218713 fabF Orientia tsutsugamushi str. Boryong 3-oxoacyl-ACP synthase YP_001248311.1 365120 D 357244 CDS YP_001248312.1 148284222 5218718 complement(368211..368969) 1 NC_009488.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 368969 purC 5218718 purC Orientia tsutsugamushi str. Boryong phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001248312.1 368211 R 357244 CDS YP_001248313.1 148284223 5218719 complement(368929..369375) 1 NC_009488.1 oligoketide cyclase/lipid transport protein 369375 5218719 OTBS_0389 Orientia tsutsugamushi str. Boryong oligoketide cyclase/lipid transport protein YP_001248313.1 368929 R 357244 CDS YP_001248314.1 148284224 5218720 complement(369398..370306) 1 NC_009488.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 370306 lipA 5218720 lipA Orientia tsutsugamushi str. Boryong lipoyl synthase YP_001248314.1 369398 R 357244 CDS YP_001248315.1 148284225 5218721 complement(370317..371225) 1 NC_009488.1 periplasmic serine proteases (ClpP class) 371225 sppA 5218721 sppA Orientia tsutsugamushi str. Boryong periplasmic serine proteases (ClpP class) YP_001248315.1 370317 R 357244 CDS YP_001248316.1 148284226 5218722 complement(371246..371707) 1 NC_009488.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 371707 smpB 5218722 smpB Orientia tsutsugamushi str. Boryong SsrA-binding protein YP_001248316.1 371246 R 357244 CDS YP_001248317.1 148284227 5218723 complement(371710..372606) 1 NC_009488.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 372606 dapA 5218723 dapA Orientia tsutsugamushi str. Boryong dihydrodipicolinate synthase YP_001248317.1 371710 R 357244 CDS YP_001248318.1 148284228 5218724 complement(372587..373489) 1 NC_009488.1 branched-chain amino acid aminotransferase 373489 ilvE 5218724 ilvE Orientia tsutsugamushi str. Boryong branched-chain amino acid aminotransferase YP_001248318.1 372587 R 357244 CDS YP_001248319.1 148284229 5218725 complement(373703..375898) 1 NC_009488.1 helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V) 375898 recD/traA 5218725 recD/traA Orientia tsutsugamushi str. Boryong helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V) YP_001248319.1 373703 R 357244 CDS YP_001248320.1 148284230 5218726 complement(375925..376299) 1 NC_009488.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 376299 rplS 5218726 rplS Orientia tsutsugamushi str. Boryong 50S ribosomal protein L19 YP_001248320.1 375925 R 357244 CDS YP_001248321.1 148284231 5218727 complement(376296..377090) 1 NC_009488.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 377090 trmD 5218727 trmD Orientia tsutsugamushi str. Boryong tRNA (guanine-N(1)-)-methyltransferase YP_001248321.1 376296 R 357244 CDS YP_001248322.1 148284232 5218728 complement(377103..378953) 1 NC_009488.1 hypothetical protein 378953 5218728 OTBS_0398 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248322.1 377103 R 357244 CDS YP_001248323.1 148284233 5218729 complement(378955..379521) 1 NC_009488.1 hypothetical protein 379521 5218729 OTBS_0399 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248323.1 378955 R 357244 CDS YP_001248324.1 148284234 5218730 complement(379572..380948) 1 NC_009488.1 outer membrane efflux protein 380948 tolC 5218730 tolC Orientia tsutsugamushi str. Boryong outer membrane efflux protein YP_001248324.1 379572 R 357244 CDS YP_001248325.1 148284235 5218732 381291..382220 1 NC_009488.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 382220 xerD 5218732 xerD Orientia tsutsugamushi str. Boryong site-specific tyrosine recombinase XerD YP_001248325.1 381291 D 357244 CDS YP_001248326.1 148284236 5218733 382882..383355 1 NC_009488.1 conjugative pilus assembly protein 383355 traF 5218733 traF Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248326.1 382882 D 357244 CDS YP_001248327.1 148284237 5218734 complement(383350..384072) 1 NC_009488.1 surfeit locus protein 1 384072 surf1 5218734 surf1 Orientia tsutsugamushi str. Boryong surfeit locus protein 1 YP_001248327.1 383350 R 357244 CDS YP_001248328.1 148284238 5218735 384314..384817 1 NC_009488.1 (3R)-hydroxymyristoyl-ACP dehydratase 384817 fabZ 5218735 fabZ Orientia tsutsugamushi str. Boryong (3R)-hydroxymyristoyl-ACP dehydratase YP_001248328.1 384314 D 357244 CDS YP_001248329.1 148284239 5218736 384821..385396 1 NC_009488.1 methylase 385396 5218736 OTBS_0405 Orientia tsutsugamushi str. Boryong methylase YP_001248329.1 384821 D 357244 CDS YP_001248330.1 148284240 5218737 385396..386751 1 NC_009488.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 386751 radA 5218737 radA Orientia tsutsugamushi str. Boryong DNA repair protein RadA YP_001248330.1 385396 D 357244 CDS YP_001248331.1 148284241 5218738 complement(386790..387710) 1 NC_009488.1 permeases-like integral membrane protein 387710 rarD 5218738 rarD Orientia tsutsugamushi str. Boryong permeases-like integral membrane protein YP_001248331.1 386790 R 357244 CDS YP_001248332.1 148284242 5218739 387862..389760 1 NC_009488.1 hypothetical protein 389760 5218739 OTBS_0408 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248332.1 387862 D 357244 CDS YP_001248333.1 148284243 5218740 389801..391729 1 NC_009488.1 hypothetical protein 391729 5218740 OTBS_0409 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248333.1 389801 D 357244 CDS YP_001248334.1 148284244 5218745 393975..394175 1 NC_009488.1 hypothetical protein 394175 rhp7 5218745 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248334.1 393975 D 357244 CDS YP_001248335.1 148284245 5218746 394300..395544 1 NC_009488.1 phage-related integrase 395544 int 5218746 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248335.1 394300 D 357244 CDS YP_001248336.1 148284246 5218747 395670..396005 1 NC_009488.1 hypothetical protein 396005 tchA 5218747 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248336.1 395670 D 357244 CDS YP_001248337.1 148284247 5218748 396005..396337 1 NC_009488.1 conjugative transfer protein 396337 traE 5218748 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248337.1 396005 D 357244 CDS YP_001248338.1 148284248 5218749 complement(396689..396829) 1 NC_009488.1 site-specific DNA adenine methylase 396829 dam4 5218749 dam4 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248338.1 396689 R 357244 CDS YP_001248339.1 148284249 5218757 complement(402798..402977) 1 NC_009488.1 hypothetical protein 402977 5218757 OTBS_0426 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248339.1 402798 R 357244 CDS YP_001248340.1 148284250 5218758 complement(403332..403457) 1 NC_009488.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 403457 rpmJ 5218758 rpmJ Orientia tsutsugamushi str. Boryong 50S ribosomal protein L36 YP_001248340.1 403332 R 357244 CDS YP_001248341.1 148284251 5218765 complement(407866..408192) 1 NC_009488.1 thioredoxin 408192 trxA 5218765 trxA Orientia tsutsugamushi str. Boryong thioredoxin YP_001248341.1 407866 R 357244 CDS YP_001248342.1 148284252 5218766 complement(408211..410580) 1 NC_009488.1 hypothetical protein 410580 omp1 5218766 omp1 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248342.1 408211 R 357244 CDS YP_001248343.1 148284253 5218767 complement(410593..411654) 1 NC_009488.1 membrane-associated zinc-dependent metalloprotease 411654 5218767 OTBS_0436 Orientia tsutsugamushi str. Boryong membrane-associated zinc-dependent metalloprotease YP_001248343.1 410593 R 357244 CDS YP_001248344.1 148284254 5218768 complement(411764..413104) 1 NC_009488.1 DNA recombination protein 413104 rmuC 5218768 rmuC Orientia tsutsugamushi str. Boryong DNA recombination protein YP_001248344.1 411764 R 357244 CDS YP_001248345.1 148284255 5218769 complement(413171..413992) 1 NC_009488.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 413992 ksgA 5218769 ksgA Orientia tsutsugamushi str. Boryong dimethyladenosine transferase YP_001248345.1 413171 R 357244 CDS YP_001248346.1 148284256 5218770 complement(414111..414986) 1 NC_009488.1 hypothetical protein 414986 5218770 OTBS_0439 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248346.1 414111 R 357244 CDS YP_001248347.1 148284257 5218771 complement(415179..415556) 1 NC_009488.1 histone-like DNA-binding protein HU 415556 hupA 5218771 hupA Orientia tsutsugamushi str. Boryong histone-like DNA-binding protein HU YP_001248347.1 415179 R 357244 CDS YP_001248348.1 148284258 5218773 complement(416061..416939) 1 NC_009488.1 zinc/manganese ABC transporter substrate binding protein 416939 znuA 5218773 znuA Orientia tsutsugamushi str. Boryong zinc/manganese ABC transporter substrate binding protein YP_001248348.1 416061 R 357244 CDS YP_001248349.1 148284259 5218774 complement(416936..418144) 1 NC_009488.1 poly(A) polymerase 418144 pcnB 5218774 pcnB Orientia tsutsugamushi str. Boryong poly(A) polymerase YP_001248349.1 416936 R 357244 CDS YP_001248350.1 148284260 5218775 complement(418197..419408) 1 NC_009488.1 proton/glutamate symporter 419408 gltP 5218775 gltP Orientia tsutsugamushi str. Boryong proton/glutamate symporter YP_001248350.1 418197 R 357244 CDS YP_001248351.1 148284261 5218776 complement(419574..423038) 1 NC_009488.1 ATP-dependent DNA helicase UvrD 423038 uvrD 5218776 uvrD Orientia tsutsugamushi str. Boryong ATP-dependent DNA helicase UvrD YP_001248351.1 419574 R 357244 CDS YP_001248352.1 148284262 5218777 complement(423050..423541) 1 NC_009488.1 phosphohistidine phosphatase 423541 sixA 5218777 sixA Orientia tsutsugamushi str. Boryong phosphohistidine phosphatase YP_001248352.1 423050 R 357244 CDS YP_001248353.1 148284263 5218778 complement(423605..424456) 1 NC_009488.1 dihydrodipicolinate reductase 424456 dapB 5218778 dapB Orientia tsutsugamushi str. Boryong dihydrodipicolinate reductase YP_001248353.1 423605 R 357244 CDS YP_001248354.1 148284264 5218779 complement(424463..425266) 1 NC_009488.1 amino acid ABC transporter substrate-binding protein 425266 yqiX 5218779 yqiX Orientia tsutsugamushi str. Boryong amino acid ABC transporter substrate-binding protein YP_001248354.1 424463 R 357244 CDS YP_001248355.1 148284265 5218781 426076..426603 1 NC_009488.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 426603 cox11 5218781 cox11 Orientia tsutsugamushi str. Boryong cytochrome C oxidase assembly protein YP_001248355.1 426076 D 357244 CDS YP_001248356.1 148284266 5218783 complement(427452..427658) 1 NC_009488.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 427658 rpmF 5218783 rpmF Orientia tsutsugamushi str. Boryong 50S ribosomal protein L32 YP_001248356.1 427452 R 357244 CDS YP_001248357.1 148284267 5218784 427755..428120 1 NC_009488.1 outer membrane lipoprotein 428120 smpA 5218784 smpA Orientia tsutsugamushi str. Boryong outer membrane lipoprotein YP_001248357.1 427755 D 357244 CDS YP_001248358.1 148284268 5218786 complement(428648..429568) 1 NC_009488.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 429568 era 5218786 era Orientia tsutsugamushi str. Boryong GTP-binding protein Era YP_001248358.1 428648 R 357244 CDS YP_001248359.1 148284269 5218787 complement(429565..430584) 1 NC_009488.1 hypothetical protein 430584 5218787 OTBS_0455 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248359.1 429565 R 357244 CDS YP_001248360.1 148284270 5218788 complement(430788..431867) 1 NC_009488.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 431867 prfA 5218788 prfA Orientia tsutsugamushi str. Boryong peptide chain release factor 1 YP_001248360.1 430788 R 357244 CDS YP_001248361.1 148284271 5218789 complement(432003..432173) 1 NC_009488.1 hypothetical protein 432173 5218789 OTBS_0457 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248361.1 432003 R 357244 CDS YP_001248362.1 148284272 5218793 complement(436440..437612) 1 NC_009488.1 ankyrin repeat-containing protein 437612 ank1B1 5218793 ank1B1 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248362.1 436440 R 357244 CDS YP_001248363.1 148284273 5218797 439896..441359 1 NC_009488.1 Ppx/GppA phosphatase 441359 gppA 5218797 gppA Orientia tsutsugamushi str. Boryong Ppx/GppA phosphatase YP_001248363.1 439896 D 357244 CDS YP_001248364.1 148284274 5218799 442860..443591 1 NC_009488.1 intradiol ring-cleavage dioxygenase 443591 5218799 OTBS_0467 Orientia tsutsugamushi str. Boryong intradiol ring-cleavage dioxygenase YP_001248364.1 442860 D 357244 CDS YP_001248365.1 148284275 5218800 444207..446723 1 NC_009488.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 446723 leuS 5218800 leuS Orientia tsutsugamushi str. Boryong leucyl-tRNA synthetase YP_001248365.1 444207 D 357244 CDS YP_001248366.1 148284276 5218801 446743..447762 1 NC_009488.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 447762 holA 5218801 holA Orientia tsutsugamushi str. Boryong DNA polymerase III subunit delta YP_001248366.1 446743 D 357244 CDS YP_001248367.1 148284277 5218803 447949..449316 1 NC_009488.1 magnesium transporter 449316 mgtE 5218803 mgtE Orientia tsutsugamushi str. Boryong magnesium transporter YP_001248367.1 447949 D 357244 CDS YP_001248368.1 148284278 5218804 complement(449414..450925) 1 NC_009488.1 Zn-dependent carboxypeptidase 450925 5218804 OTBS_0471 Orientia tsutsugamushi str. Boryong Zn-dependent carboxypeptidase YP_001248368.1 449414 R 357244 CDS YP_001248369.1 148284279 5218808 455919..456494 1 NC_009488.1 spoT-like ppGpp hydrolase 456494 spoT7 5218808 spoT7 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248369.1 455919 D 357244 CDS YP_001248370.1 148284280 5218809 456532..457176 1 NC_009488.1 ankyrin repeat-containing protein 457176 ank1C3 5218809 ank1C3 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248370.1 456532 D 357244 CDS YP_001248371.1 148284281 5218811 complement(458721..459254) 1 NC_009488.1 hypothetical protein 459254 5218811 OTBS_0478 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248371.1 458721 R 357244 CDS YP_001248372.1 148284282 5218813 459972..460247 1 NC_009488.1 hypothetical protein 460247 5218813 OTBS_0480 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248372.1 459972 D 357244 CDS YP_001248373.1 148284283 5218816 461149..461754 1 NC_009488.1 spoT-like ppGpp hydrolase 461754 spoT8 5218816 spoT8 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248373.1 461149 D 357244 CDS YP_001248374.1 148284284 5218817 461876..462826 1 NC_009488.1 transposase and inactivated derivative 462826 tnE 5218817 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248374.1 461876 D 357244 CDS YP_001248375.1 148284285 5218819 465327..466304 1 NC_009488.1 ankyrin repeat-containing protein 466304 ank1u4 5218819 ank1u4 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248375.1 465327 D 357244 CDS YP_001248376.1 148284286 5218821 complement(467552..467881) 1 NC_009488.1 conjugative transfer protein 467881 traV 5218821 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248376.1 467552 R 357244 CDS YP_001248377.1 148284287 5218822 complement(467881..468258) 1 NC_009488.1 conjugative pilus assembly protein 468258 traB 5218822 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248377.1 467881 R 357244 CDS YP_001248378.1 148284288 5218823 complement(468332..468487) 1 NC_009488.1 hypothetical protein 468487 tchB 5218823 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248378.1 468332 R 357244 CDS YP_001248379.1 148284289 5218825 complement(470143..470766) 1 NC_009488.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 470766 rpsD 5218825 rpsD Orientia tsutsugamushi str. Boryong 30S ribosomal protein S4 YP_001248379.1 470143 R 357244 CDS YP_001248380.1 148284290 5218826 470902..471654 1 NC_009488.1 hypothetical protein 471654 5218826 OTBS_0493 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248380.1 470902 D 357244 CDS YP_001248381.1 148284291 5218828 471837..472742 1 NC_009488.1 ABC transporter permease 472742 5218828 OTBS_0495 Orientia tsutsugamushi str. Boryong ABC transporter permease YP_001248381.1 471837 D 357244 CDS YP_001248382.1 148284292 5218829 472771..473526 1 NC_009488.1 ribonucleotide ABC transporter ATP-binding protein 473526 mkl 5218829 mkl Orientia tsutsugamushi str. Boryong ribonucleotide ABC transporter ATP-binding protein YP_001248382.1 472771 D 357244 CDS YP_001248383.1 148284293 5218830 complement(473697..475457) 1 NC_009488.1 single-stranded-DNA-specific exonuclease 475457 recJ 5218830 recJ Orientia tsutsugamushi str. Boryong single-stranded-DNA-specific exonuclease YP_001248383.1 473697 R 357244 CDS YP_001248384.1 148284294 5218831 complement(475471..475944) 1 NC_009488.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 475944 yqgF 5218831 yqgF Orientia tsutsugamushi str. Boryong Holliday junction resolvase-like protein YP_001248384.1 475471 R 357244 CDS YP_001248385.1 148284295 5218832 complement(475941..476855) 1 NC_009488.1 hypothetical protein 476855 5218832 OTBS_0499 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248385.1 475941 R 357244 CDS YP_001248386.1 148284296 5218833 complement(476882..477238) 1 NC_009488.1 cytochrome c-type biogenesis protein 477238 ccmE 5218833 ccmE Orientia tsutsugamushi str. Boryong cytochrome c-type biogenesis protein YP_001248386.1 476882 R 357244 CDS YP_001248387.1 148284297 5218834 477577..478740 1 NC_009488.1 NADP-dependent quinone oxidoreductase 478740 qor 5218834 qor Orientia tsutsugamushi str. Boryong NADP-dependent quinone oxidoreductase YP_001248387.1 477577 D 357244 CDS YP_001248388.1 148284298 5218835 complement(479832..480167) 1 NC_009488.1 hypothetical protein 480167 tchA 5218835 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248388.1 479832 R 357244 CDS YP_001248389.1 148284299 5218838 complement(482873..483172) 1 NC_009488.1 hypothetical protein 483172 5218838 OTBS_0505 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248389.1 482873 R 357244 CDS YP_001248390.1 148284300 5218840 484202..484381 1 NC_009488.1 hypothetical protein 484381 5218840 OTBS_0507 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248390.1 484202 D 357244 CDS YP_001248391.1 148284301 5218844 485917..486456 1 NC_009488.1 conjugative transfer protein 486456 traE 5218844 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248391.1 485917 D 357244 CDS YP_001248392.1 148284302 5218845 486590..486922 1 NC_009488.1 hypothetical protein 486922 tchC 5218845 tchC Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248392.1 486590 D 357244 CDS YP_001248393.1 148284303 5218848 complement(489026..490429) 1 NC_009488.1 sodium/pantothenate symporter 490429 panF 5218848 panF Orientia tsutsugamushi str. Boryong sodium/pantothenate symporter YP_001248393.1 489026 R 357244 CDS YP_001248394.1 148284304 5218849 complement(490445..491707) 1 NC_009488.1 major facilitator superfamily permease 491707 ampG1 5218849 ampG1 Orientia tsutsugamushi str. Boryong major facilitator superfamily permease YP_001248394.1 490445 R 357244 CDS YP_001248395.1 148284305 5218852 495996..496394 1 NC_009488.1 conjugative transfer protein 496394 traD_Ti 5218852 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248395.1 495996 D 357244 CDS YP_001248396.1 148284306 5218853 496482..497054 1 NC_009488.1 hypothetical protein 497054 rhp4 5218853 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248396.1 496482 D 357244 CDS YP_001248397.1 148284307 5218856 complement(498404..498676) 1 NC_009488.1 hypothetical protein 498676 5218856 OTBS_0523 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248397.1 498404 R 357244 CDS YP_001248398.1 148284308 5218857 complement(498904..499596) 1 NC_009488.1 hypothetical protein 499596 tpr1B7 5218857 tpr1B7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248398.1 498904 R 357244 CDS YP_001248399.1 148284309 5218859 complement(501543..501863) 1 NC_009488.1 conjugative transfer protein 501863 trbC 5218859 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248399.1 501543 R 357244 CDS YP_001248400.1 148284310 5218861 complement(502820..503110) 1 NC_009488.1 conjugative transfer protein 503110 traV 5218861 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248400.1 502820 R 357244 CDS YP_001248401.1 148284311 5218862 complement(503110..503574) 1 NC_009488.1 conjugative pilus assembly protein 503574 traB 5218862 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248401.1 503110 R 357244 CDS YP_001248402.1 148284312 5218863 complement(503686..504087) 1 NC_009488.1 hypothetical protein 504087 tchB 5218863 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248402.1 503686 R 357244 CDS YP_001248403.1 148284313 5218865 complement(504635..504970) 1 NC_009488.1 hypothetical protein 504970 tchA 5218865 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248403.1 504635 R 357244 CDS YP_001248404.1 148284314 5218870 complement(507893..508078) 1 NC_009488.1 hypothetical protein 508078 5218870 OTBS_0535 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248404.1 507893 R 357244 CDS YP_001248405.1 148284315 5218879 515073..515543 1 NC_009488.1 bacterioferritin comigratory protein 515543 bcp 5218879 bcp Orientia tsutsugamushi str. Boryong bacterioferritin comigratory protein YP_001248405.1 515073 D 357244 CDS YP_001248406.1 148284316 5218882 complement(517685..519172) 1 NC_009488.1 ATP/ADP translocase 519172 tlc 5218882 tlc Orientia tsutsugamushi str. Boryong ATP/ADP translocase YP_001248406.1 517685 R 357244 CDS YP_001248407.1 148284317 5218883 complement(519314..519841) 1 NC_009488.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 519841 rplI 5218883 rplI Orientia tsutsugamushi str. Boryong 50S ribosomal protein L9 YP_001248407.1 519314 R 357244 CDS YP_001248408.1 148284318 5218884 complement(519884..520192) 1 NC_009488.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 520192 rpsR 5218884 rpsR Orientia tsutsugamushi str. Boryong 30S ribosomal protein S18 YP_001248408.1 519884 R 357244 CDS YP_001248409.1 148284319 5218885 complement(520240..520596) 1 NC_009488.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 520596 rpsF 5218885 rpsF Orientia tsutsugamushi str. Boryong 30S ribosomal protein S6 YP_001248409.1 520240 R 357244 CDS YP_001248410.1 148284320 5218886 520889..521638 1 NC_009488.1 PhoB-like response regulator 521638 phoB 5218886 phoB Orientia tsutsugamushi str. Boryong PhoB-like response regulator YP_001248410.1 520889 D 357244 CDS YP_001248411.1 148284321 5218887 521744..523414 1 NC_009488.1 multidrug resistance protein, ABC-type multidrug transport system, ATPase and permease components 523414 msbA1 5218887 msbA1 Orientia tsutsugamushi str. Boryong multidrug resistance protein, ABC-type multidrug transport system, ATPase and permease components YP_001248411.1 521744 D 357244 CDS YP_001248412.1 148284322 5218889 complement(523915..525405) 1 NC_009488.1 FKBP-type peptidylprolyl isomerase 525405 tig 5218889 tig Orientia tsutsugamushi str. Boryong FKBP-type peptidylprolyl isomerase YP_001248412.1 523915 R 357244 CDS YP_001248413.1 148284323 5218891 complement(525557..526723) 1 NC_009488.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 526723 dapE 5218891 dapE Orientia tsutsugamushi str. Boryong succinyl-diaminopimelate desuccinylase YP_001248413.1 525557 R 357244 CDS YP_001248414.1 148284324 5218892 complement(526886..528778) 1 NC_009488.1 molecular chaperone; heat shock protein 90 528778 htpG 5218892 htpG Orientia tsutsugamushi str. Boryong heat shock protein 90 YP_001248414.1 526886 R 357244 CDS YP_001248415.1 148284325 5218893 529224..529430 1 NC_009488.1 50S ribosomal protein L35 529430 rpmI 5218893 rpmI Orientia tsutsugamushi str. Boryong 50S ribosomal protein L35 YP_001248415.1 529224 D 357244 CDS YP_001248416.1 148284326 5218894 529450..529815 1 NC_009488.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 529815 rplT 5218894 rplT Orientia tsutsugamushi str. Boryong 50S ribosomal protein L20 YP_001248416.1 529450 D 357244 CDS YP_001248417.1 148284327 5218899 534801..534980 1 NC_009488.1 hypothetical protein 534980 5218899 OTBS_0563 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248417.1 534801 D 357244 CDS YP_001248418.1 148284328 5218901 complement(535813..536139) 1 NC_009488.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 536139 rpsP 5218901 rpsP Orientia tsutsugamushi str. Boryong 30S ribosomal protein S16 YP_001248418.1 535813 R 357244 CDS YP_001248419.1 148284329 5218902 complement(536148..536315) 1 NC_009488.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 536315 rpmG 5218902 rpmG Orientia tsutsugamushi str. Boryong 50S ribosomal protein L33 YP_001248419.1 536148 R 357244 CDS YP_001248420.1 148284330 5218906 539483..540244 1 NC_009488.1 transposase and inactivated derivative 540244 tnA 5218906 tnA Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248420.1 539483 D 357244 CDS YP_001248421.1 148284331 5218907 complement(540449..541228) 1 NC_009488.1 hypothetical protein 541228 5218907 OTBS_0570 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248421.1 540449 R 357244 CDS YP_001248422.1 148284332 5218908 complement(541225..542997) 1 NC_009488.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 542997 argS 5218908 argS Orientia tsutsugamushi str. Boryong arginyl-tRNA synthetase YP_001248422.1 541225 R 357244 CDS YP_001248423.1 148284333 5218909 543163..543507 1 NC_009488.1 iron-binding protein IscA/HesB 543507 iscA 5218909 iscA Orientia tsutsugamushi str. Boryong iron-binding protein IscA/HesB YP_001248423.1 543163 D 357244 CDS YP_001248424.1 148284334 5218910 complement(543508..544968) 1 NC_009488.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 544968 gltX 5218910 gltX Orientia tsutsugamushi str. Boryong glutamyl-tRNA synthetase YP_001248424.1 543508 R 357244 CDS YP_001248425.1 148284335 5218911 complement(545284..547959) 1 NC_009488.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 547959 alaS 5218911 alaS Orientia tsutsugamushi str. Boryong alanyl-tRNA synthetase YP_001248425.1 545284 R 357244 CDS YP_001248426.1 148284336 5218912 548086..549699 1 NC_009488.1 hypothetical protein 549699 5218912 OTBS_0575 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248426.1 548086 D 357244 CDS YP_001248427.1 148284337 5218913 549701..550330 1 NC_009488.1 hypothetical protein 550330 5218913 OTBS_0576 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248427.1 549701 D 357244 CDS YP_001248428.1 148284338 5218914 complement(550341..551213) 1 NC_009488.1 H(+)-transporting two-sector ATPase F(1) gamma subunit precursor 551213 atpG 5218914 atpG Orientia tsutsugamushi str. Boryong H(+)-transporting two-sector ATPase F(1) gamma subunit precursor YP_001248428.1 550341 R 357244 CDS YP_001248429.1 148284339 5218915 complement(551246..552784) 1 NC_009488.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha 552784 atpA 5218915 atpA Orientia tsutsugamushi str. Boryong ATP synthase F0F1 subunit alpha YP_001248429.1 551246 R 357244 CDS YP_001248430.1 148284340 5218916 complement(552827..553372) 1 NC_009488.1 H(+)-transporting two-sector ATPase F(1) delta subunit 553372 atpH 5218916 atpH Orientia tsutsugamushi str. Boryong H(+)-transporting two-sector ATPase F(1) delta subunit YP_001248430.1 552827 R 357244 CDS YP_001248431.1 148284341 5218917 complement(553467..553913) 1 NC_009488.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 553913 dut 5218917 dut Orientia tsutsugamushi str. Boryong deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001248431.1 553467 R 357244 CDS YP_001248432.1 148284342 5218919 complement(554226..554768) 1 NC_009488.1 translation initiation factor IF-3 554768 infC 5218919 infC Orientia tsutsugamushi str. Boryong translation initiation factor IF-3 YP_001248432.1 554226 R 357244 CDS YP_001248433.1 148284343 5218920 complement(554782..556728) 1 NC_009488.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 556728 thrS 5218920 thrS Orientia tsutsugamushi str. Boryong threonyl-tRNA synthetase YP_001248433.1 554782 R 357244 CDS YP_001248434.1 148284344 5218921 556979..558319 1 NC_009488.1 folylpolyglutamate synthase 558319 folC 5218921 folC Orientia tsutsugamushi str. Boryong folylpolyglutamate synthase YP_001248434.1 556979 D 357244 CDS YP_001248435.1 148284345 5218922 complement(558422..559453) 1 NC_009488.1 peptidylprolyl isomerase 559453 ppiC 5218922 ppiC Orientia tsutsugamushi str. Boryong peptidylprolyl isomerase YP_001248435.1 558422 R 357244 CDS YP_001248436.1 148284346 5218923 559699..562341 1 NC_009488.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 562341 secA 5218923 secA Orientia tsutsugamushi str. Boryong preprotein translocase subunit SecA YP_001248436.1 559699 D 357244 CDS YP_001248437.1 148284347 5218927 complement(567296..567781) 1 NC_009488.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 567781 invA 5218927 invA Orientia tsutsugamushi str. Boryong dinucleoside polyphosphate hydrolase YP_001248437.1 567296 R 357244 CDS YP_001248438.1 148284348 5218933 complement(573045..574196) 1 NC_009488.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 574196 recF 5218933 recF Orientia tsutsugamushi str. Boryong recombination protein F YP_001248438.1 573045 R 357244 CDS YP_001248439.1 148284349 5218934 complement(574202..575014) 1 NC_009488.1 cell division protein 575014 ftsQ 5218934 ftsQ Orientia tsutsugamushi str. Boryong cell division protein YP_001248439.1 574202 R 357244 CDS YP_001248440.1 148284350 5218935 complement(575025..575900) 1 NC_009488.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 575900 ddl 5218935 ddl Orientia tsutsugamushi str. Boryong D-alanine--D-alanine ligase YP_001248440.1 575025 R 357244 CDS YP_001248441.1 148284351 5218936 complement(575977..576888) 1 NC_009488.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 576888 murB 5218936 murB Orientia tsutsugamushi str. Boryong UDP-N-acetylenolpyruvoylglucosamine reductase YP_001248441.1 575977 R 357244 CDS YP_001248442.1 148284352 5218937 complement(576857..578365) 1 NC_009488.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 578365 murC 5218937 murC Orientia tsutsugamushi str. Boryong UDP-N-acetylmuramate--L-alanine ligase YP_001248442.1 576857 R 357244 CDS YP_001248443.1 148284353 5218938 complement(578541..579272) 1 NC_009488.1 hypothetical protein 579272 5218938 OTBS_0601 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248443.1 578541 R 357244 CDS YP_001248444.1 148284354 5218939 complement(579500..581098) 1 NC_009488.1 hypothetical protein 581098 5218939 OTBS_0602 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248444.1 579500 R 357244 CDS YP_001248445.1 148284355 5218940 581646..582524 1 NC_009488.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 582524 glyQ 5218940 glyQ Orientia tsutsugamushi str. Boryong glycyl-tRNA synthetase subunit alpha YP_001248445.1 581646 D 357244 CDS YP_001248446.1 148284356 5218941 582517..584568 1 NC_009488.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 584568 glyS 5218941 glyS Orientia tsutsugamushi str. Boryong glycyl-tRNA synthetase subunit beta YP_001248446.1 582517 D 357244 CDS YP_001248447.1 148284357 5218942 584546..585514 1 NC_009488.1 translation factor protein 585514 5218942 OTBS_0605 Orientia tsutsugamushi str. Boryong translation factor protein YP_001248447.1 584546 D 357244 CDS YP_001248448.1 148284358 5218946 complement(588927..589877) 1 NC_009488.1 transposase and inactivated derivative 589877 tnE 5218946 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248448.1 588927 R 357244 CDS YP_001248449.1 148284359 5218950 593413..593988 1 NC_009488.1 spoT-like ppGpp hydrolase 593988 spoT11 5218950 spoT11 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248449.1 593413 D 357244 CDS YP_001248450.1 148284360 5218951 594028..594672 1 NC_009488.1 ankyrin repeat-containing protein 594672 ank1C4 5218951 ank1C4 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248450.1 594028 D 357244 CDS YP_001248451.1 148284361 5218952 594775..595278 1 NC_009488.1 ompA-like autotransporter 595278 rhp6 5218952 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248451.1 594775 D 357244 CDS YP_001248452.1 148284362 5218953 complement(595279..595875) 1 NC_009488.1 site-specific DNA adenine methylase 595875 dam5 5218953 dam5 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248452.1 595279 R 357244 CDS YP_001248453.1 148284363 5218955 596185..597066 1 NC_009488.1 signal transduction histidine kinase 597066 hkp10 5218955 hkp10 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248453.1 596185 D 357244 CDS YP_001248454.1 148284364 5218957 598133..598837 1 NC_009488.1 signal transduction histidine kinase 598837 hkp11 5218957 hkp11 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248454.1 598133 D 357244 CDS YP_001248455.1 148284365 5218958 598848..599795 1 NC_009488.1 signal transduction histidine kinase 599795 hkp12 5218958 hkp12 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248455.1 598848 D 357244 CDS YP_001248456.1 148284366 5218960 600331..600936 1 NC_009488.1 spoT-like ppGpp hydrolase 600936 spoT12 5218960 spoT12 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248456.1 600331 D 357244 CDS YP_001248457.1 148284367 5218961 601058..601984 1 NC_009488.1 transposase and inactivated derivative 601984 tnE 5218961 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248457.1 601058 D 357244 CDS YP_001248458.1 148284368 5218964 complement(604221..604820) 1 NC_009488.1 hypothetical protein 604820 rhp4 5218964 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248458.1 604221 R 357244 CDS YP_001248459.1 148284369 5218965 complement(604850..605290) 1 NC_009488.1 conjugative transfer protein 605290 traD_Ti 5218965 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248459.1 604850 R 357244 CDS YP_001248460.1 148284370 5218967 610166..611077 1 NC_009488.1 transposase and inactivated derivative 611077 tnE 5218967 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248460.1 610166 D 357244 CDS YP_001248461.1 148284371 5218969 complement(612834..613496) 1 NC_009488.1 hypothetical protein 613496 tpr1B8 5218969 tpr1B8 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248461.1 612834 R 357244 CDS YP_001248462.1 148284372 5218973 complement(617483..619144) 1 NC_009488.1 conjugative transfer protein 619144 traN 5218973 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248462.1 617483 R 357244 CDS YP_001248463.1 148284373 5218974 complement(619167..619487) 1 NC_009488.1 conjugative transfer protein 619487 trbC 5218974 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248463.1 619167 R 357244 CDS YP_001248464.1 148284374 5219223 complement(619568..620269) 1 NC_009488.1 conjugative transfer protein 620269 traU 5219223 traU Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248464.1 619568 R 357244 CDS YP_001248465.1 148284375 5219224 complement(620783..621598) 1 NC_009488.1 hypothetical protein 621598 5219224 OTBS_0639 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248465.1 620783 R 357244 CDS YP_001248466.1 148284376 5219226 complement(622871..623023) 1 NC_009488.1 conjugative transfer protein 623023 traV 5219226 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248466.1 622871 R 357244 CDS YP_001248467.1 148284377 5219229 complement(624602..624934) 1 NC_009488.1 hypothetical protein 624934 tchC 5219229 tchC Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248467.1 624602 R 357244 CDS YP_001248468.1 148284378 5219230 complement(625070..625558) 1 NC_009488.1 hypothetical protein 625558 tchB 5219230 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248468.1 625070 R 357244 CDS YP_001248469.1 148284379 5219232 complement(626107..626442) 1 NC_009488.1 hypothetical protein 626442 tchA 5219232 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248469.1 626107 R 357244 CDS YP_001248470.1 148284380 5219236 629941..630909 1 NC_009488.1 replicative DNA helicase 630909 dnaB9 5219236 dnaB9 Orientia tsutsugamushi str. Boryong replicative DNA helicase YP_001248470.1 629941 D 357244 CDS YP_001248471.1 148284381 5219243 complement(636586..637104) 1 NC_009488.1 hypothetical protein 637104 5219243 OTBS_0658 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248471.1 636586 R 357244 CDS YP_001248472.1 148284382 5219248 641055..642533 1 NC_009488.1 amino acid/peptide transporter 642533 5219248 OTBS_0662 Orientia tsutsugamushi str. Boryong amino acid/peptide transporter YP_001248472.1 641055 D 357244 CDS YP_001248473.1 148284383 5219249 complement(642697..644097) 1 NC_009488.1 fumarate hydratase 644097 fumC 5219249 fumC Orientia tsutsugamushi str. Boryong fumarate hydratase YP_001248473.1 642697 R 357244 CDS YP_001248474.1 148284384 5219250 complement(644161..644838) 1 NC_009488.1 hypothetical protein 644838 5219250 OTBS_0664 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248474.1 644161 R 357244 CDS YP_001248475.1 148284385 5219257 649915..651516 1 NC_009488.1 hypothetical protein 651516 5219257 OTBS_0671 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248475.1 649915 D 357244 CDS YP_001248476.1 148284386 5219259 complement(651950..652333) 1 NC_009488.1 glutaredoxin 652333 grxC 5219259 grxC Orientia tsutsugamushi str. Boryong glutaredoxin YP_001248476.1 651950 R 357244 CDS YP_001248477.1 148284387 5219260 complement(652541..652969) 1 NC_009488.1 hypothetical protein 652969 5219260 OTBS_0674 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248477.1 652541 R 357244 CDS YP_001248478.1 148284388 5219261 complement(653067..653879) 1 NC_009488.1 hypothetical protein 653879 5219261 OTBS_0675 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248478.1 653067 R 357244 CDS YP_001248479.1 148284389 5219262 complement(653883..654482) 1 NC_009488.1 hypothetical protein 654482 5219262 OTBS_0676 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248479.1 653883 R 357244 CDS YP_001248480.1 148284390 5219263 complement(654475..654900) 1 NC_009488.1 hypothetical protein 654900 5219263 OTBS_0677 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248480.1 654475 R 357244 CDS YP_001248481.1 148284391 5219264 complement(654900..655241) 1 NC_009488.1 hypothetical protein 655241 5219264 OTBS_0678 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248481.1 654900 R 357244 CDS YP_001248482.1 148284392 5219265 complement(655243..655788) 1 NC_009488.1 hypothetical protein 655788 5219265 OTBS_0679 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248482.1 655243 R 357244 CDS YP_001248483.1 148284393 5219266 complement(655822..656937) 1 NC_009488.1 phage major capsid protein, HK97 656937 5219266 OTBS_0680 Orientia tsutsugamushi str. Boryong phage major capsid protein, HK97 YP_001248483.1 655822 R 357244 CDS YP_001248484.1 148284394 5219267 complement(656949..657503) 1 NC_009488.1 peptidase U35 657503 5219267 OTBS_0681 Orientia tsutsugamushi str. Boryong peptidase U35 YP_001248484.1 656949 R 357244 CDS YP_001248485.1 148284395 5219270 complement(661216..661698) 1 NC_009488.1 ribose-5-phosphate isomerase 661698 lacA 5219270 lacA Orientia tsutsugamushi str. Boryong ribose-5-phosphate isomerase YP_001248485.1 661216 R 357244 CDS YP_001248486.1 148284396 5219272 complement(662001..662315) 1 NC_009488.1 hypothetical protein 662315 rhp4 5219272 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248486.1 662001 R 357244 CDS YP_001248487.1 148284397 5219277 complement(664452..665486) 1 NC_009488.1 ankyrin repeat-containing protein 665486 ank1u5 5219277 ank1u5 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248487.1 664452 R 357244 CDS YP_001248488.1 148284398 5219281 complement(667543..669324) 1 NC_009488.1 multidrug resistance ABC transporter ATP-binding protein 669324 abcT3 5219281 abcT3 Orientia tsutsugamushi str. Boryong multidrug resistance ABC transporter ATP-binding protein YP_001248488.1 667543 R 357244 CDS YP_001248489.1 148284399 5219282 complement(669377..670126) 1 NC_009488.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 670126 pyrH 5219282 pyrH Orientia tsutsugamushi str. Boryong uridylate kinase YP_001248489.1 669377 R 357244 CDS YP_001248490.1 148284400 5219283 complement(670352..671443) 1 NC_009488.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 671443 mraY 5219283 mraY Orientia tsutsugamushi str. Boryong phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001248490.1 670352 R 357244 CDS YP_001248491.1 148284401 5219284 complement(671433..672848) 1 NC_009488.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase 672848 murF 5219284 murF Orientia tsutsugamushi str. Boryong UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase YP_001248491.1 671433 R 357244 CDS YP_001248492.1 148284402 5219285 complement(672845..674314) 1 NC_009488.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 674314 murE 5219285 murE Orientia tsutsugamushi str. Boryong UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001248492.1 672845 R 357244 CDS YP_001248493.1 148284403 5219286 complement(674301..676052) 1 NC_009488.1 penicillin-binding protein 676052 pbpA2 5219286 pbpA2 Orientia tsutsugamushi str. Boryong penicillin-binding protein YP_001248493.1 674301 R 357244 CDS YP_001248494.1 148284404 5219288 complement(676555..677493) 1 NC_009488.1 S-adenosyl-methyltransferase MraW 677493 mraW 5219288 mraW Orientia tsutsugamushi str. Boryong S-adenosyl-methyltransferase MraW YP_001248494.1 676555 R 357244 CDS YP_001248495.1 148284405 5219289 complement(677562..678695) 1 NC_009488.1 chaperone protein 678695 dnaJ 5219289 dnaJ Orientia tsutsugamushi str. Boryong chaperone protein YP_001248495.1 677562 R 357244 CDS YP_001248496.1 148284406 5219290 complement(678783..680711) 1 NC_009488.1 chaperone protein 680711 dnaK 5219290 dnaK Orientia tsutsugamushi str. Boryong chaperone protein YP_001248496.1 678783 R 357244 CDS YP_001248497.1 148284407 5219291 complement(681091..681378) 1 NC_009488.1 BolA-like stress-induced morphogen 681378 bolA 5219291 bolA Orientia tsutsugamushi str. Boryong BolA-like stress-induced morphogen YP_001248497.1 681091 R 357244 CDS YP_001248498.1 148284408 5219292 681585..682382 1 NC_009488.1 enoyl-ACP reductase 682382 fabI 5219292 fabI Orientia tsutsugamushi str. Boryong enoyl-ACP reductase YP_001248498.1 681585 D 357244 CDS YP_001248499.1 148284409 5219295 684094..684294 1 NC_009488.1 hypothetical protein 684294 rhp7 5219295 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248499.1 684094 D 357244 CDS YP_001248500.1 148284410 5219297 685790..686125 1 NC_009488.1 hypothetical protein 686125 tchA 5219297 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248500.1 685790 D 357244 CDS YP_001248501.1 148284411 5219299 complement(686809..686949) 1 NC_009488.1 site-specific DNA adenine methylase 686949 dam6 5219299 dam6 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248501.1 686809 R 357244 CDS YP_001248502.1 148284412 5219301 689989..690648 1 NC_009488.1 conjugative transfer protein 690648 traW 5219301 traW Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248502.1 689989 D 357244 CDS YP_001248503.1 148284413 5219302 690731..690919 1 NC_009488.1 hypothetical protein 690919 tchE 5219302 tchE Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248503.1 690731 D 357244 CDS YP_001248504.1 148284414 5219304 691998..692318 1 NC_009488.1 conjugative transfer protein 692318 trbC 5219304 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248504.1 691998 D 357244 CDS YP_001248505.1 148284415 5219307 694297..695271 1 NC_009488.1 hypothetical protein 695271 tpr1B9 5219307 tpr1B9 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248505.1 694297 D 357244 CDS YP_001248506.1 148284416 5219310 701426..701626 1 NC_009488.1 hypothetical protein 701626 5219310 OTBS_0724 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248506.1 701426 D 357244 CDS YP_001248507.1 148284417 5219312 702947..704683 1 NC_009488.1 hypothetical protein 704683 5219312 OTBS_0726 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248507.1 702947 D 357244 CDS YP_001248508.1 148284418 5219314 706053..706598 1 NC_009488.1 hypothetical protein 706598 rhp4 5219314 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248508.1 706053 D 357244 CDS YP_001248509.1 148284419 5219315 complement(706666..707259) 1 NC_009488.1 spoT-like ppGpp hydrolase 707259 spoT15 5219315 spoT15 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248509.1 706666 R 357244 CDS YP_001248510.1 148284420 5219317 complement(708156..708983) 1 NC_009488.1 signal transduction histidine kinase 708983 hkp15 5219317 hkp15 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248510.1 708156 R 357244 CDS YP_001248511.1 148284421 5219318 709675..711579 1 NC_009488.1 hypothetical protein 711579 5219318 OTBS_0732 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248511.1 709675 D 357244 CDS YP_001248512.1 148284422 5219321 complement(712997..713371) 1 NC_009488.1 ompA-like autotransporter 713371 rhp6 5219321 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248512.1 712997 R 357244 CDS YP_001248513.1 148284423 5219323 complement(715181..715585) 1 NC_009488.1 ATP synthase subunit epsilon 715585 atpC 5219323 atpC Orientia tsutsugamushi str. Boryong ATP synthase subunit epsilon YP_001248513.1 715181 R 357244 CDS YP_001248514.1 148284424 5219324 complement(715582..717018) 1 NC_009488.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 717018 atpD 5219324 atpD Orientia tsutsugamushi str. Boryong ATP synthase F0F1 subunit beta YP_001248514.1 715582 R 357244 CDS YP_001248515.1 148284425 5219326 complement(717368..718519) 1 NC_009488.1 glycosyltransferase 718519 5219326 OTBS_0740 Orientia tsutsugamushi str. Boryong glycosyltransferase YP_001248515.1 717368 R 357244 CDS YP_001248516.1 148284426 5219327 718543..719316 1 NC_009488.1 aplha/beta hydrolase 719316 5219327 OTBS_0741 Orientia tsutsugamushi str. Boryong aplha/beta hydrolase YP_001248516.1 718543 D 357244 CDS YP_001248517.1 148284427 5219328 complement(719706..721703) 1 NC_009488.1 soluble lytic murein transglycosylase precursor (slt) 721703 mltE1 5219328 mltE1 Orientia tsutsugamushi str. Boryong soluble lytic murein transglycosylase precursor (slt) YP_001248517.1 719706 R 357244 CDS YP_001248518.1 148284428 5219329 721745..722683 1 NC_009488.1 ACP S-malonyltransferase 722683 fabD 5219329 fabD Orientia tsutsugamushi str. Boryong ACP S-malonyltransferase YP_001248518.1 721745 D 357244 CDS YP_001248519.1 148284429 5219335 complement(725551..725697) 1 NC_009488.1 hypothetical protein 725697 rhp7 5219335 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248519.1 725551 R 357244 CDS YP_001248520.1 148284430 5219338 complement(728016..728891) 1 NC_009488.1 transposase and inactivated derivative 728891 tnA 5219338 tnA Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248520.1 728016 R 357244 CDS YP_001248521.1 148284431 5219339 729183..729647 1 NC_009488.1 signal transduction histidine kinase 729647 hkp16 5219339 hkp16 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248521.1 729183 D 357244 CDS YP_001248522.1 148284432 5219341 730183..730788 1 NC_009488.1 spoT-like ppGpp hydrolase 730788 spoT16 5219341 spoT16 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248522.1 730183 D 357244 CDS YP_001248523.1 148284433 5219342 730910..731836 1 NC_009488.1 transposase and inactivated derivative 731836 tnE 5219342 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248523.1 730910 D 357244 CDS YP_001248524.1 148284434 5219344 complement(734395..737169) 1 NC_009488.1 TPR and ankyrin repeat-containing protein 737169 tpr1B10 5219344 tpr1B10 Orientia tsutsugamushi str. Boryong TPR and ankyrin repeat-containing protein YP_001248524.1 734395 R 357244 CDS YP_001248525.1 148284435 5219348 739629..740636 1 NC_009488.1 tryptophanyl-tRNA synthetase 740636 trpS 5219348 trpS Orientia tsutsugamushi str. Boryong tryptophanyl-tRNA synthetase YP_001248525.1 739629 D 357244 CDS YP_001248526.1 148284436 5219351 742649..742849 1 NC_009488.1 hypothetical protein 742849 5219351 OTBS_0765 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248526.1 742649 D 357244 CDS YP_001248527.1 148284437 5219353 743709..746414 1 NC_009488.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 746414 ppdK 5219353 ppdK Orientia tsutsugamushi str. Boryong pyruvate phosphate dikinase YP_001248527.1 743709 D 357244 CDS YP_001248528.1 148284438 5219355 complement(748150..748824) 1 NC_009488.1 hypothetical protein 748824 5219355 OTBS_0769 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248528.1 748150 R 357244 CDS YP_001248529.1 148284439 5219356 748942..749133 1 NC_009488.1 hypothetical protein 749133 5219356 OTBS_0770 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248529.1 748942 D 357244 CDS YP_001248530.1 148284440 5219357 750181..750909 1 NC_009488.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 750909 5219357 OTBS_0771 Orientia tsutsugamushi str. Boryong ATP synthase F0F1 subunit A YP_001248530.1 750181 D 357244 CDS YP_001248531.1 148284441 5219358 750965..751189 1 NC_009488.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 751189 5219358 OTBS_0772 Orientia tsutsugamushi str. Boryong ATP synthase F0F1 subunit C YP_001248531.1 750965 D 357244 CDS YP_001248532.1 148284442 5219359 751197..751694 1 NC_009488.1 ATP synthase subunit B 751694 5219359 OTBS_0773 Orientia tsutsugamushi str. Boryong ATP synthase subunit B YP_001248532.1 751197 D 357244 CDS YP_001248533.1 148284443 5219360 751849..752172 1 NC_009488.1 hypothetical protein 752172 5219360 OTBS_0774 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248533.1 751849 D 357244 CDS YP_001248534.1 148284444 5219365 complement(754918..757206) 1 NC_009488.1 DNA translocase FtsK 757206 ftsK 5219365 ftsK Orientia tsutsugamushi str. Boryong DNA translocase FtsK YP_001248534.1 754918 R 357244 CDS YP_001248535.1 148284445 5219366 complement(757297..757668) 1 NC_009488.1 hypothetical protein 757668 5219366 OTBS_0780 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248535.1 757297 R 357244 CDS YP_001248536.1 148284446 5219367 complement(757701..759368) 1 NC_009488.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 759368 abcT1 5219367 abcT1 Orientia tsutsugamushi str. Boryong ABC transporter ATP-binding protein YP_001248536.1 757701 R 357244 CDS YP_001248537.1 148284447 5219368 complement(759509..760342) 1 NC_009488.1 hypothetical protein 760342 5219368 OTBS_0782 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248537.1 759509 R 357244 CDS YP_001248538.1 148284448 5219371 762807..764159 1 NC_009488.1 signal recognition particle protein 764159 ffh 5219371 ffh Orientia tsutsugamushi str. Boryong signal recognition particle protein YP_001248538.1 762807 D 357244 CDS YP_001248539.1 148284449 5219372 764215..764571 1 NC_009488.1 periplasmic divalent cation tolerance protein 764571 cutA 5219372 cutA Orientia tsutsugamushi str. Boryong periplasmic divalent cation tolerance protein YP_001248539.1 764215 D 357244 CDS YP_001248540.1 148284450 5219373 765324..766154 1 NC_009488.1 hypothetical protein 766154 5219373 OTBS_0787 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248540.1 765324 D 357244 CDS YP_001248541.1 148284451 5219374 766361..767026 1 NC_009488.1 guanylate kinase 767026 gmpk 5219374 gmpk Orientia tsutsugamushi str. Boryong guanylate kinase YP_001248541.1 766361 D 357244 CDS YP_001248542.1 148284452 5219375 767160..767534 1 NC_009488.1 hypothetical protein 767534 5219375 OTBS_0789 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248542.1 767160 D 357244 CDS YP_001248543.1 148284453 5219376 767525..769804 1 NC_009488.1 hypothetical protein 769804 5219376 OTBS_0790 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248543.1 767525 D 357244 CDS YP_001248544.1 148284454 5219384 779055..779453 1 NC_009488.1 conjugative transfer protein 779453 traD_Ti 5219384 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248544.1 779055 D 357244 CDS YP_001248545.1 148284455 5219385 779541..780119 1 NC_009488.1 hypothetical protein 780119 rhp4 5219385 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248545.1 779541 D 357244 CDS YP_001248546.1 148284456 5219386 complement(780197..780772) 1 NC_009488.1 spoT-like ppGpp hydrolase 780772 spoT18 5219386 spoT18 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248546.1 780197 R 357244 CDS YP_001248547.1 148284457 5219389 complement(784108..784326) 1 NC_009488.1 hypothetical protein 784326 5219389 OTBS_0803 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248547.1 784108 R 357244 CDS YP_001248548.1 148284458 5219391 complement(785940..786689) 1 NC_009488.1 sulfurtransferase 786689 5219391 OTBS_0805 Orientia tsutsugamushi str. Boryong sulfurtransferase YP_001248548.1 785940 R 357244 CDS YP_001248549.1 148284459 5219392 complement(786802..787437) 1 NC_009488.1 hypothetical protein 787437 5219392 OTBS_0806 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248549.1 786802 R 357244 CDS YP_001248550.1 148284460 5219395 788108..788533 1 NC_009488.1 hypothetical protein 788533 5219395 OTBS_0809 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248550.1 788108 D 357244 CDS YP_001248551.1 148284461 5219397 complement(789696..790856) 1 NC_009488.1 hypothetical protein 790856 5219397 OTBS_0811 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248551.1 789696 R 357244 CDS YP_001248552.1 148284462 5219402 795886..798006 1 NC_009488.1 ankyrin repeat-containing protein 798006 ank2A4 5219402 ank2A4 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248552.1 795886 D 357244 CDS YP_001248553.1 148284463 5219403 complement(798296..799102) 1 NC_009488.1 site-specific DNA adenine methylase 799102 dam8 5219403 dam8 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248553.1 798296 R 357244 CDS YP_001248554.1 148284464 5219404 799820..800074 1 NC_009488.1 signal transduction histidine kinase 800074 hkp46 5219404 hkp46 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248554.1 799820 D 357244 CDS YP_001248555.1 148284465 5219405 800151..801422 1 NC_009488.1 signal transduction histidine kinase 801422 hkp18 5219405 hkp18 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248555.1 800151 D 357244 CDS YP_001248556.1 148284466 5219406 801556..802125 1 NC_009488.1 spoT-like ppGpp hydrolase 802125 spoT19 5219406 spoT19 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248556.1 801556 D 357244 CDS YP_001248557.1 148284467 5219407 complement(802149..802667) 1 NC_009488.1 hypothetical protein 802667 5219407 OTBS_0821 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248557.1 802149 R 357244 CDS YP_001248558.1 148284468 5219408 complement(802814..803089) 1 NC_009488.1 hypothetical protein 803089 5219408 OTBS_0822 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248558.1 802814 R 357244 CDS YP_001248559.1 148284469 5219412 complement(809270..810226) 1 NC_009488.1 conjugative transfer protein 810226 traD_F 5219412 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248559.1 809270 R 357244 CDS YP_001248560.1 148284470 5219417 complement(814237..814557) 1 NC_009488.1 conjugative transfer protein 814557 trbC 5219417 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248560.1 814237 R 357244 CDS YP_001248561.1 148284471 5219419 complement(815514..815804) 1 NC_009488.1 conjugative transfer protein 815804 traV 5219419 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248561.1 815514 R 357244 CDS YP_001248562.1 148284472 5219420 complement(815804..816268) 1 NC_009488.1 conjugative pilus assembly protein 816268 traB 5219420 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248562.1 815804 R 357244 CDS YP_001248563.1 148284473 5219421 complement(816380..816781) 1 NC_009488.1 hypothetical protein 816781 tchB 5219421 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248563.1 816380 R 357244 CDS YP_001248564.1 148284474 5219423 complement(817329..817664) 1 NC_009488.1 hypothetical protein 817664 tchA 5219423 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248564.1 817329 R 357244 CDS YP_001248565.1 148284475 5219424 complement(817790..819034) 1 NC_009488.1 phage-related integrase 819034 int 5219424 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248565.1 817790 R 357244 CDS YP_001248566.1 148284476 5219425 complement(819159..819359) 1 NC_009488.1 hypothetical protein 819359 rhp7 5219425 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248566.1 819159 R 357244 CDS YP_001248567.1 148284477 5219427 complement(819658..823095) 1 NC_009488.1 Na+/proline symporter 823095 5219427 OTBS_0841 Orientia tsutsugamushi str. Boryong Na+/proline symporter YP_001248567.1 819658 R 357244 CDS YP_001248568.1 148284478 5219429 complement(823734..825293) 1 NC_009488.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 825293 icd 5219429 icd Orientia tsutsugamushi str. Boryong isocitrate dehydrogenase YP_001248568.1 823734 R 357244 CDS YP_001248569.1 148284479 5219430 825467..826363 1 NC_009488.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 826363 hemC 5219430 hemC Orientia tsutsugamushi str. Boryong porphobilinogen deaminase YP_001248569.1 825467 D 357244 CDS YP_001248570.1 148284480 5219431 826664..827884 1 NC_009488.1 proline/betaine transporter 827884 proP 5219431 proP Orientia tsutsugamushi str. Boryong proline/betaine transporter YP_001248570.1 826664 D 357244 CDS YP_001248571.1 148284481 5219436 832139..833761 1 NC_009488.1 RNA-binding protein 833761 rhp9 5219436 rhp9 Orientia tsutsugamushi str. Boryong RNA-binding protein YP_001248571.1 832139 D 357244 CDS YP_001248572.1 148284482 5219439 834316..836184 1 NC_009488.1 hypothetical protein 836184 rhp2 5219439 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248572.1 834316 D 357244 CDS YP_001248573.1 148284483 5219441 complement(836751..837764) 1 NC_009488.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 837764 tdcB 5219441 tdcB Orientia tsutsugamushi str. Boryong threonine dehydratase YP_001248573.1 836751 R 357244 CDS YP_001248574.1 148284484 5219442 837881..840241 1 NC_009488.1 ATP-dependent protease La 840241 lon 5219442 lon Orientia tsutsugamushi str. Boryong ATP-dependent protease La YP_001248574.1 837881 D 357244 CDS YP_001248575.1 148284485 5219443 complement(840318..840968) 1 NC_009488.1 hypothetical protein 840968 5219443 OTBS_0856 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248575.1 840318 R 357244 CDS YP_001248576.1 148284486 5219444 complement(841098..841847) 1 NC_009488.1 competence protein F 841847 comF 5219444 comF Orientia tsutsugamushi str. Boryong competence protein F YP_001248576.1 841098 R 357244 CDS YP_001248577.1 148284487 5219445 complement(841828..842865) 1 NC_009488.1 tRNA delta(2)-isopentenylpyrophosphate transferase 842865 miaA 5219445 miaA Orientia tsutsugamushi str. Boryong tRNA delta(2)-isopentenylpyrophosphate transferase YP_001248577.1 841828 R 357244 CDS YP_001248578.1 148284488 5219446 842936..843553 1 NC_009488.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 843553 rnhB 5219446 rnhB Orientia tsutsugamushi str. Boryong ribonuclease HII YP_001248578.1 842936 D 357244 CDS YP_001248579.1 148284489 5219447 844116..844367 1 NC_009488.1 hypothetical protein 844367 5219447 OTBS_0860 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248579.1 844116 D 357244 CDS YP_001248580.1 148284490 5219451 complement(847165..849114) 1 NC_009488.1 ompA-like, autotransporter 849114 rhp8 5219451 rhp8 Orientia tsutsugamushi str. Boryong ompA-like, autotransporter YP_001248580.1 847165 R 357244 CDS YP_001248581.1 148284491 5219458 complement(852262..854418) 1 NC_009488.1 ankyrin repeat-containing protein 854418 ank2A5 5219458 ank2A5 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248581.1 852262 R 357244 CDS YP_001248582.1 148284492 5219461 complement(857766..858722) 1 NC_009488.1 conjugative transfer protein 858722 traD_F 5219461 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248582.1 857766 R 357244 CDS YP_001248583.1 148284493 5219465 complement(861043..862704) 1 NC_009488.1 conjugative transfer protein 862704 traN 5219465 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248583.1 861043 R 357244 CDS YP_001248584.1 148284494 5219466 complement(862727..863047) 1 NC_009488.1 conjugative transfer protein 863047 trbC 5219466 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248584.1 862727 R 357244 CDS YP_001248585.1 148284495 5219468 complement(864004..864294) 1 NC_009488.1 conjugative transfer protein 864294 traV 5219468 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248585.1 864004 R 357244 CDS YP_001248586.1 148284496 5219469 complement(864294..864758) 1 NC_009488.1 conjugative pilus assembly protein 864758 traB 5219469 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248586.1 864294 R 357244 CDS YP_001248587.1 148284497 5219470 complement(864870..865271) 1 NC_009488.1 hypothetical protein 865271 tchB 5219470 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248587.1 864870 R 357244 CDS YP_001248588.1 148284498 5219471 complement(865268..865819) 1 NC_009488.1 conjugative transfer protein 865819 traE 5219471 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248588.1 865268 R 357244 CDS YP_001248589.1 148284499 5219472 complement(865819..866154) 1 NC_009488.1 hypothetical protein 866154 tchA 5219472 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248589.1 865819 R 357244 CDS YP_001248590.1 148284500 5219476 complement(870119..870811) 1 NC_009488.1 hypothetical protein 870811 5219476 OTBS_0889 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248590.1 870119 R 357244 CDS YP_001248591.1 148284501 5219479 874105..874503 1 NC_009488.1 conjugative transfer protein 874503 traD_Ti 5219479 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248591.1 874105 D 357244 CDS YP_001248592.1 148284502 5219480 complement(874577..875512) 1 NC_009488.1 hypothetical protein 875512 5219480 OTBS_0893 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248592.1 874577 R 357244 CDS YP_001248593.1 148284503 5219485 complement(878054..878605) 1 NC_009488.1 signal transduction histidine kinase 878605 hkp21 5219485 hkp21 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248593.1 878054 R 357244 CDS YP_001248594.1 148284504 5219486 complement(878840..879112) 1 NC_009488.1 hypothetical protein 879112 5219486 OTBS_0899 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248594.1 878840 R 357244 CDS YP_001248595.1 148284505 5219488 complement(880284..880814) 1 NC_009488.1 ompA-like autotransporter 880814 rhp6 5219488 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248595.1 880284 R 357244 CDS YP_001248596.1 148284506 5219489 complement(880834..880962) 1 NC_009488.1 ankyrin repeat-containing protein 880962 ank1C6 5219489 ank1C6 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248596.1 880834 R 357244 CDS YP_001248597.1 148284507 5219493 complement(882855..883205) 1 NC_009488.1 sigma(54) modulation protein 883205 yhbH 5219493 yhbH Orientia tsutsugamushi str. Boryong sigma(54) modulation protein YP_001248597.1 882855 R 357244 CDS YP_001248598.1 148284508 5219494 883451..884998 1 NC_009488.1 PleC-like histidine kinase 884998 pleC 5219494 pleC Orientia tsutsugamushi str. Boryong PleC-like histidine kinase YP_001248598.1 883451 D 357244 CDS YP_001248599.1 148284509 5219498 886020..887483 1 NC_009488.1 unwinds double stranded DNA; replicative DNA helicase 887483 dnaB14 5219498 dnaB14 Orientia tsutsugamushi str. Boryong replicative DNA helicase YP_001248599.1 886020 D 357244 CDS YP_001248600.1 148284510 5219499 complement(887972..889144) 1 NC_009488.1 ankyrin repeat-containing protein 889144 ank1B2 5219499 ank1B2 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248600.1 887972 R 357244 CDS YP_001248601.1 148284511 5219503 890975..891271 1 NC_009488.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 891271 groES 5219503 groES Orientia tsutsugamushi str. Boryong co-chaperonin GroES YP_001248601.1 890975 D 357244 CDS YP_001248602.1 148284512 5219504 891344..893008 1 NC_009488.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 893008 groEL 5219504 groEL Orientia tsutsugamushi str. Boryong molecular chaperone GroEL YP_001248602.1 891344 D 357244 CDS YP_001248603.1 148284513 5219505 complement(894159..894554) 1 NC_009488.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 894554 acpS 5219505 acpS Orientia tsutsugamushi str. Boryong 4'-phosphopantetheinyl transferase YP_001248603.1 894159 R 357244 CDS YP_001248604.1 148284514 5219506 complement(894565..896700) 1 NC_009488.1 spoT-like bifunctional ppGpp synthetase/hydrolase 896700 spoT21 5219506 spoT21 Orientia tsutsugamushi str. Boryong spoT-like bifunctional ppGpp synthetase/hydrolase YP_001248604.1 894565 R 357244 CDS YP_001248605.1 148284515 5219507 complement(896718..897116) 1 NC_009488.1 hypothetical protein 897116 5219507 OTBS_0920 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248605.1 896718 R 357244 CDS YP_001248606.1 148284516 5219508 897471..898211 1 NC_009488.1 hypothetical protein 898211 5219508 OTBS_0921 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248606.1 897471 D 357244 CDS YP_001248607.1 148284517 5219509 898385..898714 1 NC_009488.1 hypothetical protein 898714 5219509 OTBS_0922 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248607.1 898385 D 357244 CDS YP_001248608.1 148284518 5219510 898737..899114 1 NC_009488.1 hypothetical protein 899114 5219510 OTBS_0923 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248608.1 898737 D 357244 CDS YP_001248609.1 148284519 5219511 899134..900123 1 NC_009488.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 900123 obgE 5219511 obgE Orientia tsutsugamushi str. Boryong GTPase ObgE YP_001248609.1 899134 D 357244 CDS YP_001248610.1 148284520 5219512 900644..900802 1 NC_009488.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA 900802 tatA 5219512 tatA Orientia tsutsugamushi str. Boryong twin-arginine translocation protein TatA YP_001248610.1 900644 D 357244 CDS YP_001248611.1 148284521 5219513 complement(901227..901751) 1 NC_009488.1 hypothetical protein 901751 5219513 OTBS_0926 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248611.1 901227 R 357244 CDS YP_001248612.1 148284522 5219516 complement(904060..905022) 1 NC_009488.1 transposase and inactivated derivative 905022 tnD 5219516 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248612.1 904060 R 357244 CDS YP_001248613.1 148284523 5219520 complement(907472..908653) 1 NC_009488.1 ankyrin repeat-containing protein 908653 ank1D2 5219520 ank1D2 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248613.1 907472 R 357244 CDS YP_001248614.1 148284524 5219522 complement(910508..910828) 1 NC_009488.1 conjugative transfer protein 910828 trbC 5219522 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248614.1 910508 R 357244 CDS YP_001248615.1 148284525 5219524 complement(911785..912075) 1 NC_009488.1 conjugative transfer protein 912075 traV 5219524 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248615.1 911785 R 357244 CDS YP_001248616.1 148284526 5219525 complement(912075..912539) 1 NC_009488.1 conjugative pilus assembly protein 912539 traB 5219525 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248616.1 912075 R 357244 CDS YP_001248617.1 148284527 5219526 complement(912651..913052) 1 NC_009488.1 hypothetical protein 913052 tchB 5219526 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248617.1 912651 R 357244 CDS YP_001248618.1 148284528 5219527 complement(913049..913600) 1 NC_009488.1 conjugative transfer protein 913600 traE 5219527 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248618.1 913049 R 357244 CDS YP_001248619.1 148284529 5219528 complement(913600..913935) 1 NC_009488.1 hypothetical protein 913935 tchA 5219528 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248619.1 913600 R 357244 CDS YP_001248620.1 148284530 5219529 complement(914061..915305) 1 NC_009488.1 phage-related integrase 915305 int 5219529 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248620.1 914061 R 357244 CDS YP_001248621.1 148284531 5219530 complement(915430..915630) 1 NC_009488.1 hypothetical protein 915630 rhp7 5219530 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248621.1 915430 R 357244 CDS YP_001248622.1 148284532 5219532 complement(916176..916877) 1 NC_009488.1 hypothetical protein 916877 5219532 OTBS_0945 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248622.1 916176 R 357244 CDS YP_001248623.1 148284533 5219533 complement(916897..917682) 1 NC_009488.1 hypothetical protein 917682 5219533 OTBS_0946 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248623.1 916897 R 357244 CDS YP_001248624.1 148284534 5219534 complement(917679..918248) 1 NC_009488.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 918248 efp 5219534 efp Orientia tsutsugamushi str. Boryong elongation factor P YP_001248624.1 917679 R 357244 CDS YP_001248625.1 148284535 5219535 918454..919707 1 NC_009488.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 919707 clpX 5219535 clpX Orientia tsutsugamushi str. Boryong ATP-dependent protease ATP-binding subunit ClpX YP_001248625.1 918454 D 357244 CDS YP_001248626.1 148284536 5219536 complement(919835..921136) 1 NC_009488.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 921136 proS 5219536 proS Orientia tsutsugamushi str. Boryong prolyl-tRNA synthetase YP_001248626.1 919835 R 357244 CDS YP_001248627.1 148284537 5219537 complement(921150..921443) 1 NC_009488.1 hypothetical protein 921443 5219537 OTBS_0950 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248627.1 921150 R 357244 CDS YP_001248628.1 148284538 5219538 complement(921467..922678) 1 NC_009488.1 phosphoglycerate kinase 922678 5219538 OTBS_0951 Orientia tsutsugamushi str. Boryong phosphoglycerate kinase YP_001248628.1 921467 R 357244 CDS YP_001248629.1 148284539 5219539 complement(922760..923776) 1 NC_009488.1 glyceraldehyde-3-phosphate dehydrogenase 923776 gap 5219539 gap Orientia tsutsugamushi str. Boryong glyceraldehyde-3-phosphate dehydrogenase YP_001248629.1 922760 R 357244 CDS YP_001248630.1 148284540 5219540 924051..926504 1 NC_009488.1 virB4 protein precursor 926504 virB4-2 5219540 virB4-2 Orientia tsutsugamushi str. Boryong virB4 protein precursor YP_001248630.1 924051 D 357244 CDS YP_001248631.1 148284541 5219541 926504..931030 1 NC_009488.1 hypothetical protein 931030 5219541 OTBS_0954 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248631.1 926504 D 357244 CDS YP_001248632.1 148284542 5219546 936436..937311 1 NC_009488.1 ankyrin repeat-containing protein 937311 ank1u6 5219546 ank1u6 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248632.1 936436 D 357244 CDS YP_001248633.1 148284543 5219548 938525..940126 1 NC_009488.1 signal transduction histidine kinase 940126 hkp22 5219548 hkp22 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248633.1 938525 D 357244 CDS YP_001248634.1 148284544 5219549 940227..940802 1 NC_009488.1 spoT-like ppGpp hydrolase 940802 spoT22 5219549 spoT22 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248634.1 940227 D 357244 CDS YP_001248635.1 148284545 5219550 complement(940880..941458) 1 NC_009488.1 hypothetical protein 941458 rhp4 5219550 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248635.1 940880 R 357244 CDS YP_001248636.1 148284546 5219551 complement(941546..941944) 1 NC_009488.1 conjugative transfer protein 941944 traD_Ti 5219551 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248636.1 941546 R 357244 CDS YP_001248637.1 148284547 5219555 complement(947706..948239) 1 NC_009488.1 hypothetical protein 948239 rhp4 5219555 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248637.1 947706 R 357244 CDS YP_001248638.1 148284548 5219564 956112..956657 1 NC_009488.1 hypothetical protein 956657 5219564 OTBS_0977 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248638.1 956112 D 357244 CDS YP_001248639.1 148284549 5219565 956650..963549 1 NC_009488.1 hypothetical protein 963549 5219565 OTBS_0978 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248639.1 956650 D 357244 CDS YP_001248640.1 148284550 5219572 complement(970650..970970) 1 NC_009488.1 conjugative transfer protein 970970 trbC 5219572 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248640.1 970650 R 357244 CDS YP_001248641.1 148284551 5219574 complement(971927..972217) 1 NC_009488.1 conjugative transfer protein 972217 traV 5219574 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248641.1 971927 R 357244 CDS YP_001248642.1 148284552 5219575 complement(972217..972681) 1 NC_009488.1 conjugative pilus assembly protein 972681 traB 5219575 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248642.1 972217 R 357244 CDS YP_001248643.1 148284553 5219576 complement(972793..973194) 1 NC_009488.1 hypothetical protein 973194 tchB 5219576 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248643.1 972793 R 357244 CDS YP_001248644.1 148284554 5219577 complement(973191..973742) 1 NC_009488.1 conjugative transfer protein 973742 traE 5219577 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248644.1 973191 R 357244 CDS YP_001248645.1 148284555 5219578 complement(973742..974077) 1 NC_009488.1 hypothetical protein 974077 tchA 5219578 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248645.1 973742 R 357244 CDS YP_001248646.1 148284556 5219580 976186..976569 1 NC_009488.1 hypothetical protein 976569 5219580 OTBS_0993 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248646.1 976186 D 357244 CDS YP_001248647.1 148284557 5219582 complement(977497..979233) 1 NC_009488.1 export ATP-binding/permease 979233 5219582 OTBS_0995 Orientia tsutsugamushi str. Boryong export ATP-binding/permease YP_001248647.1 977497 R 357244 CDS YP_001248648.1 148284558 5219583 complement(979217..979549) 1 NC_009488.1 iron-binding and oxidizing protein 979549 cyaY 5219583 cyaY Orientia tsutsugamushi str. Boryong iron-binding and oxidizing protein YP_001248648.1 979217 R 357244 CDS YP_001248649.1 148284559 5219586 980453..984568 1 NC_009488.1 hypothetical protein 984568 5219586 OTBS_0999 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248649.1 980453 D 357244 CDS YP_001248650.1 148284560 5219591 complement(990100..990489) 1 NC_009488.1 hypothetical protein 990489 5219591 OTBS_1004 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248650.1 990100 R 357244 CDS YP_001248651.1 148284561 5219594 complement(992981..993181) 1 NC_009488.1 hypothetical protein 993181 5219594 OTBS_1007 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248651.1 992981 R 357244 CDS YP_001248652.1 148284562 5219595 complement(993559..993993) 1 NC_009488.1 hypothetical protein 993993 5219595 OTBS_1008 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248652.1 993559 R 357244 CDS YP_001248653.1 148284563 5219596 complement(994002..995036) 1 NC_009488.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 995036 hemH 5219596 hemH Orientia tsutsugamushi str. Boryong ferrochelatase YP_001248653.1 994002 R 357244 CDS YP_001248654.1 148284564 5219597 complement(995029..996057) 1 NC_009488.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 996057 hemE 5219597 hemE Orientia tsutsugamushi str. Boryong uroporphyrinogen decarboxylase YP_001248654.1 995029 R 357244 CDS YP_001248655.1 148284565 5219599 997544..999049 1 NC_009488.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 999049 rho 5219599 rho Orientia tsutsugamushi str. Boryong transcription termination factor Rho YP_001248655.1 997544 D 357244 CDS YP_001248656.1 148284566 5219601 999791..999979 1 NC_009488.1 hypothetical protein 999979 5219601 OTBS_1014 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248656.1 999791 D 357244 CDS YP_001248657.1 148284567 5219603 1001545..1002828 1 NC_009488.1 hypothetical protein 1002828 5219603 OTBS_1016 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248657.1 1001545 D 357244 CDS YP_001248658.1 148284568 5219604 1003489..1005357 1 NC_009488.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 1005357 gidA 5219604 gidA Orientia tsutsugamushi str. Boryong tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_001248658.1 1003489 D 357244 CDS YP_001248659.1 148284569 5219605 complement(1005497..1006150) 1 NC_009488.1 thymidylate kinase 1006150 tmk 5219605 tmk Orientia tsutsugamushi str. Boryong thymidylate kinase YP_001248659.1 1005497 R 357244 CDS YP_001248660.1 148284570 5219606 complement(1006143..1007216) 1 NC_009488.1 ATPase n2B 1007216 n2B 5219606 n2B Orientia tsutsugamushi str. Boryong ATPase n2B YP_001248660.1 1006143 R 357244 CDS YP_001248661.1 148284571 5219608 complement(1007979..1009343) 1 NC_009488.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1009343 engA 5219608 engA Orientia tsutsugamushi str. Boryong GTP-binding protein EngA YP_001248661.1 1007979 R 357244 CDS YP_001248662.1 148284572 5219609 complement(1009404..1012136) 1 NC_009488.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1012136 polA 5219609 polA Orientia tsutsugamushi str. Boryong DNA polymerase I YP_001248662.1 1009404 R 357244 CDS YP_001248663.1 148284573 5219610 complement(1012521..1013975) 1 NC_009488.1 sodium/pantothenate symporter 1013975 panF 5219610 panF Orientia tsutsugamushi str. Boryong sodium/pantothenate symporter YP_001248663.1 1012521 R 357244 CDS YP_001248664.1 148284574 5219611 1014315..1014473 1 NC_009488.1 hypothetical protein 1014473 5219611 OTBS_1024 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248664.1 1014315 D 357244 CDS YP_001248665.1 148284575 5219613 1015690..1016520 1 NC_009488.1 hypothetical protein 1016520 5219613 OTBS_1026 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248665.1 1015690 D 357244 CDS YP_001248666.1 148284576 5219620 complement(1020494..1021456) 1 NC_009488.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1021456 secF 5219620 secF Orientia tsutsugamushi str. Boryong preprotein translocase subunit SecF YP_001248666.1 1020494 R 357244 CDS YP_001248667.1 148284577 5219621 complement(1021504..1024173) 1 NC_009488.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1024173 mutS 5219621 mutS Orientia tsutsugamushi str. Boryong DNA mismatch repair protein MutS YP_001248667.1 1021504 R 357244 CDS YP_001248668.1 148284578 5219622 complement(1024226..1025758) 1 NC_009488.1 ATP/ADP translocase 1025758 tlc 5219622 tlc Orientia tsutsugamushi str. Boryong ATP/ADP translocase YP_001248668.1 1024226 R 357244 CDS YP_001248669.1 148284579 5219624 1026123..1026980 1 NC_009488.1 methyltransferase 1026980 5219624 OTBS_1036 Orientia tsutsugamushi str. Boryong methyltransferase YP_001248669.1 1026123 D 357244 CDS YP_001248670.1 148284580 5219625 complement(1026982..1028271) 1 NC_009488.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1028271 serS 5219625 serS Orientia tsutsugamushi str. Boryong seryl-tRNA synthetase YP_001248670.1 1026982 R 357244 CDS YP_001248671.1 148284581 5219626 complement(1028249..1029016) 1 NC_009488.1 sec-independent protein translocase 1029016 tatC 5219626 tatC Orientia tsutsugamushi str. Boryong sec-independent protein translocase YP_001248671.1 1028249 R 357244 CDS YP_001248672.1 148284582 5219627 1029162..1029758 1 NC_009488.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1029758 gidB 5219627 gidB Orientia tsutsugamushi str. Boryong 16S rRNA methyltransferase GidB YP_001248672.1 1029162 D 357244 CDS YP_001248673.1 148284583 5219628 1029765..1030562 1 NC_009488.1 chromosome partitioning protein 1030562 parA 5219628 parA Orientia tsutsugamushi str. Boryong chromosome partitioning protein YP_001248673.1 1029765 D 357244 CDS YP_001248674.1 148284584 5219629 1030574..1031455 1 NC_009488.1 chromosome partitioning protein 1031455 parB 5219629 parB Orientia tsutsugamushi str. Boryong chromosome partitioning protein YP_001248674.1 1030574 D 357244 CDS YP_001248675.1 148284585 5219633 complement(1033625..1033906) 1 NC_009488.1 hypothetical protein 1033906 5219633 OTBS_1045 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248675.1 1033625 R 357244 CDS YP_001248676.1 148284586 5219634 1033960..1034199 1 NC_009488.1 exodeoxyribonuclease VII small subunit 1034199 xseB 5219634 xseB Orientia tsutsugamushi str. Boryong exodeoxyribonuclease VII small subunit YP_001248676.1 1033960 D 357244 CDS YP_001248677.1 148284587 5219639 1036968..1038692 1 NC_009488.1 hypothetical protein 1038692 tchD 5219639 tchD Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248677.1 1036968 D 357244 CDS YP_001248678.1 148284588 5219640 1038911..1039786 1 NC_009488.1 ankyrin repeat-containing protein 1039786 ank1C7 5219640 ank1C7 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248678.1 1038911 D 357244 CDS YP_001248679.1 148284589 5219641 1039880..1040383 1 NC_009488.1 ompA-like autotransporter 1040383 rhp6 5219641 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248679.1 1039880 D 357244 CDS YP_001248680.1 148284590 5219647 complement(1043523..1045349) 1 NC_009488.1 hypothetical protein 1045349 5219647 OTBS_1059 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248680.1 1043523 R 357244 CDS YP_001248681.1 148284591 5219654 complement(1049455..1049748) 1 NC_009488.1 conjugative transfer protein 1049748 traV 5219654 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248681.1 1049455 R 357244 CDS YP_001248682.1 148284592 5219655 complement(1049762..1050232) 1 NC_009488.1 conjugative pilus assembly protein 1050232 traB 5219655 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248682.1 1049762 R 357244 CDS YP_001248683.1 148284593 5219657 1052149..1053015 1 NC_009488.1 transposase and inactivated derivative 1053015 tnB 5219657 tnB Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248683.1 1052149 D 357244 CDS YP_001248684.1 148284594 5219658 complement(1053121..1053924) 1 NC_009488.1 site-specific DNA adenine methylase 1053924 dam11 5219658 dam11 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248684.1 1053121 R 357244 CDS YP_001248685.1 148284595 5219659 1054400..1055116 1 NC_009488.1 hypothetical protein 1055116 rhp5 5219659 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248685.1 1054400 D 357244 CDS YP_001248686.1 148284596 5219660 1055468..1056211 1 NC_009488.1 signal transduction histidine kinase 1056211 hkp23 5219660 hkp23 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248686.1 1055468 D 357244 CDS YP_001248687.1 148284597 5219661 1056219..1057076 1 NC_009488.1 signal transduction histidine kinase 1057076 hkp24 5219661 hkp24 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248687.1 1056219 D 357244 CDS YP_001248688.1 148284598 5219662 1057177..1057752 1 NC_009488.1 spoT-like ppGpp hydrolase 1057752 spoT23 5219662 spoT23 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248688.1 1057177 D 357244 CDS YP_001248689.1 148284599 5219663 complement(1057789..1058328) 1 NC_009488.1 hypothetical protein 1058328 rhp4 5219663 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248689.1 1057789 R 357244 CDS YP_001248690.1 148284600 5219664 complement(1058416..1058871) 1 NC_009488.1 conjugative transfer protein 1058871 traD_Ti 5219664 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248690.1 1058416 R 357244 CDS YP_001248691.1 148284601 5219665 complement(1058873..1059073) 1 NC_009488.1 hypothetical protein 1059073 5219665 OTBS_1077 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248691.1 1058873 R 357244 CDS YP_001248692.1 148284602 5219667 1063669..1064580 1 NC_009488.1 transposase and inactivated derivative 1064580 tnE 5219667 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248692.1 1063669 D 357244 CDS YP_001248693.1 148284603 5219669 complement(1066337..1066999) 1 NC_009488.1 hypothetical protein 1066999 tpr1B11 5219669 tpr1B11 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248693.1 1066337 R 357244 CDS YP_001248694.1 148284604 5219673 complement(1070986..1072647) 1 NC_009488.1 conjugative transfer protein 1072647 traN 5219673 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248694.1 1070986 R 357244 CDS YP_001248695.1 148284605 5219674 complement(1072670..1072990) 1 NC_009488.1 conjugative transfer protein 1072990 trbC 5219674 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248695.1 1072670 R 357244 CDS YP_001248696.1 148284606 5219676 complement(1073947..1074237) 1 NC_009488.1 conjugative transfer protein 1074237 traV 5219676 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248696.1 1073947 R 357244 CDS YP_001248697.1 148284607 5219677 complement(1074237..1074701) 1 NC_009488.1 conjugative pilus assembly protein 1074701 traB 5219677 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248697.1 1074237 R 357244 CDS YP_001248698.1 148284608 5219678 complement(1074813..1075214) 1 NC_009488.1 hypothetical protein 1075214 tchB 5219678 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248698.1 1074813 R 357244 CDS YP_001248699.1 148284609 5219679 complement(1075211..1075762) 1 NC_009488.1 conjugative transfer protein 1075762 traE 5219679 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248699.1 1075211 R 357244 CDS YP_001248700.1 148284610 5219680 complement(1075762..1076097) 1 NC_009488.1 hypothetical protein 1076097 tchA 5219680 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248700.1 1075762 R 357244 CDS YP_001248701.1 148284611 5219684 1078504..1078917 1 NC_009488.1 hypothetical protein 1078917 5219684 OTBS_1096 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248701.1 1078504 D 357244 CDS YP_001248702.1 148284612 5219689 complement(1082856..1083200) 1 NC_009488.1 ferredoxin-like iron-sulfur cluster-binding protein 1083200 fdxB 5219689 fdxB Orientia tsutsugamushi str. Boryong ferredoxin-like iron-sulfur cluster-binding protein YP_001248702.1 1082856 R 357244 CDS YP_001248703.1 148284613 5219690 complement(1083217..1085067) 1 NC_009488.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1085067 hscA 5219690 hscA Orientia tsutsugamushi str. Boryong chaperone protein HscA YP_001248703.1 1083217 R 357244 CDS YP_001248704.1 148284614 5219691 complement(1085054..1085557) 1 NC_009488.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1085557 hscB 5219691 hscB Orientia tsutsugamushi str. Boryong co-chaperone HscB YP_001248704.1 1085054 R 357244 CDS YP_001248705.1 148284615 5219692 complement(1085569..1085943) 1 NC_009488.1 iron-sulfur cluster assembly accessory protein 1085943 iscA 5219692 iscA Orientia tsutsugamushi str. Boryong iron-sulfur cluster assembly accessory protein YP_001248705.1 1085569 R 357244 CDS YP_001248706.1 148284616 5219693 complement(1085956..1086381) 1 NC_009488.1 FeS cluster assembly scaffold protein 1086381 iscU 5219693 iscU Orientia tsutsugamushi str. Boryong FeS cluster assembly scaffold protein YP_001248706.1 1085956 R 357244 CDS YP_001248707.1 148284617 5219695 complement(1089005..1089451) 1 NC_009488.1 iron-sulfur cluster assembly transcription regulation factor 1089451 iscR 5219695 iscR Orientia tsutsugamushi str. Boryong iron-sulfur cluster assembly transcription regulation factor YP_001248707.1 1089005 R 357244 CDS YP_001248708.1 148284618 5219696 1089656..1090357 1 NC_009488.1 hypothetical protein 1090357 5219696 OTBS_1108 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248708.1 1089656 D 357244 CDS YP_001248709.1 148284619 5219698 1090651..1091898 1 NC_009488.1 cell division protein 1091898 ftsA 5219698 ftsA Orientia tsutsugamushi str. Boryong cell division protein YP_001248709.1 1090651 D 357244 CDS YP_001248710.1 148284620 5219699 1091877..1093178 1 NC_009488.1 hypothetical protein 1093178 5219699 OTBS_1110 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248710.1 1091877 D 357244 CDS YP_001248711.1 148284621 5219700 1093163..1094914 1 NC_009488.1 glycosyl transferase, group 2 1094914 5219700 OTBS_1111 Orientia tsutsugamushi str. Boryong glycosyl transferase, group 2 YP_001248711.1 1093163 D 357244 CDS YP_001248712.1 148284622 5219701 1094956..1095120 1 NC_009488.1 hypothetical protein 1095120 5219701 OTBS_1112 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248712.1 1094956 D 357244 CDS YP_001248713.1 148284623 5219709 complement(1100845..1102689) 1 NC_009488.1 RNA polymerase sigma factor 1102689 rpoD 5219709 rpoD Orientia tsutsugamushi str. Boryong RNA polymerase sigma factor YP_001248713.1 1100845 R 357244 CDS YP_001248714.1 148284624 5219710 complement(1102673..1104448) 1 NC_009488.1 synthesizes RNA primers at the replication forks; DNA primase 1104448 dnaG 5219710 dnaG Orientia tsutsugamushi str. Boryong DNA primase YP_001248714.1 1102673 R 357244 CDS YP_001248715.1 148284625 5219712 complement(1105368..1106528) 1 NC_009488.1 DNA processing protein 1106528 dprA 5219712 dprA Orientia tsutsugamushi str. Boryong DNA processing protein YP_001248715.1 1105368 R 357244 CDS YP_001248716.1 148284626 5219713 complement(1106569..1107171) 1 NC_009488.1 thioredoxin peroxidase 1 1107171 tdpX1 5219713 tdpX1 Orientia tsutsugamushi str. Boryong thioredoxin peroxidase 1 YP_001248716.1 1106569 R 357244 CDS YP_001248717.1 148284627 5219720 complement(1112456..1112623) 1 NC_009488.1 hypothetical protein 1112623 5219720 OTBS_1130 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248717.1 1112456 R 357244 CDS YP_001248718.1 148284628 5219721 complement(1112705..1112941) 1 NC_009488.1 hypothetical protein 1112941 5219721 OTBS_1131 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248718.1 1112705 R 357244 CDS YP_001248719.1 148284629 5219723 1115280..1116767 1 NC_009488.1 ankyrin repeat-containing protein 1116767 ank1F1 5219723 ank1F1 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248719.1 1115280 D 357244 CDS YP_001248720.1 148284630 5219725 1117555..1119207 1 NC_009488.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1119207 pepA 5219725 pepA Orientia tsutsugamushi str. Boryong leucyl aminopeptidase YP_001248720.1 1117555 D 357244 CDS YP_001248721.1 148284631 5219726 1119191..1120042 1 NC_009488.1 hypothetical protein 1120042 5219726 OTBS_1136 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248721.1 1119191 D 357244 CDS YP_001248722.1 148284632 5219728 1120317..1121243 1 NC_009488.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1121243 rpsB 5219728 rpsB Orientia tsutsugamushi str. Boryong 30S ribosomal protein S2 YP_001248722.1 1120317 D 357244 CDS YP_001248723.1 148284633 5219729 1121240..1122169 1 NC_009488.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1122169 tsf 5219729 tsf Orientia tsutsugamushi str. Boryong elongation factor Ts YP_001248723.1 1121240 D 357244 CDS YP_001248724.1 148284634 5219730 complement(1122249..1124687) 1 NC_009488.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1124687 pheT 5219730 pheT Orientia tsutsugamushi str. Boryong phenylalanyl-tRNA synthetase subunit beta YP_001248724.1 1122249 R 357244 CDS YP_001248725.1 148284635 5219731 complement(1124684..1125718) 1 NC_009488.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1125718 pheS 5219731 pheS Orientia tsutsugamushi str. Boryong phenylalanyl-tRNA synthetase subunit alpha YP_001248725.1 1124684 R 357244 CDS YP_001248726.1 148284636 5219739 1129556..1129891 1 NC_009488.1 hypothetical protein 1129891 tchA 5219739 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248726.1 1129556 D 357244 CDS YP_001248727.1 148284637 5219741 1130439..1130840 1 NC_009488.1 hypothetical protein 1130840 tchB 5219741 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248727.1 1130439 D 357244 CDS YP_001248728.1 148284638 5219742 1130952..1131416 1 NC_009488.1 conjugative pilus assembly protein 1131416 traB 5219742 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248728.1 1130952 D 357244 CDS YP_001248729.1 148284639 5219743 1131416..1131706 1 NC_009488.1 conjugative transfer protein 1131706 traV 5219743 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248729.1 1131416 D 357244 CDS YP_001248730.1 148284640 5219745 1132663..1132983 1 NC_009488.1 conjugative transfer protein 1132983 trbC 5219745 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248730.1 1132663 D 357244 CDS YP_001248731.1 148284641 5219751 1140518..1141180 1 NC_009488.1 hypothetical protein 1141180 tpr1B12 5219751 tpr1B12 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248731.1 1140518 D 357244 CDS YP_001248732.1 148284642 5219753 1142241..1143203 1 NC_009488.1 transposase and inactivated derivative 1143203 tnD 5219753 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248732.1 1142241 D 357244 CDS YP_001248733.1 148284643 5219755 complement(1144006..1144863) 1 NC_009488.1 signal transduction histidine kinase 1144863 hkp25 5219755 hkp25 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248733.1 1144006 R 357244 CDS YP_001248734.1 148284644 5219756 complement(1144868..1145614) 1 NC_009488.1 signal transduction histidine kinase 1145614 hkp26 5219756 hkp26 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248734.1 1144868 R 357244 CDS YP_001248735.1 148284645 5219757 1145963..1146175 1 NC_009488.1 site-specific DNA adenine methylase 1146175 dam12 5219757 dam12 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248735.1 1145963 D 357244 CDS YP_001248736.1 148284646 5219758 complement(1146267..1146797) 1 NC_009488.1 hypothetical protein 1146797 rhp4 5219758 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248736.1 1146267 R 357244 CDS YP_001248737.1 148284647 5219759 1147127..1147354 1 NC_009488.1 hypothetical protein 1147354 5219759 OTBS_1169 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248737.1 1147127 D 357244 CDS YP_001248738.1 148284648 5219761 complement(1148093..1148614) 1 NC_009488.1 ompA-like autotransporter 1148614 rhp6 5219761 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248738.1 1148093 R 357244 CDS YP_001248739.1 148284649 5219762 complement(1148716..1149090) 1 NC_009488.1 ankyrin repeat-containing protein 1149090 ank1C8 5219762 ank1C8 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248739.1 1148716 R 357244 CDS YP_001248740.1 148284650 5219764 complement(1151442..1151714) 1 NC_009488.1 ankyrin repeat-containing protein 1151714 ank1C9 5219764 ank1C9 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248740.1 1151442 R 357244 CDS YP_001248741.1 148284651 5219765 complement(1151754..1152329) 1 NC_009488.1 spoT-like ppGpp hydrolase 1152329 spoT26 5219765 spoT26 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248741.1 1151754 R 357244 CDS YP_001248742.1 148284652 5219769 complement(1156397..1157488) 1 NC_009488.1 hypothetical protein 1157488 5219769 OTBS_1179 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248742.1 1156397 R 357244 CDS YP_001248743.1 148284653 5219771 1158845..1159591 1 NC_009488.1 signal transduction histidine kinase 1159591 hkp27 5219771 hkp27 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248743.1 1158845 D 357244 CDS YP_001248744.1 148284654 5219772 1159596..1160453 1 NC_009488.1 signal transduction histidine kinase 1160453 hkp28 5219772 hkp28 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248744.1 1159596 D 357244 CDS YP_001248745.1 148284655 5219775 complement(1161256..1162218) 1 NC_009488.1 transposase and inactivated derivative 1162218 tnD 5219775 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248745.1 1161256 R 357244 CDS YP_001248746.1 148284656 5219777 complement(1163279..1163941) 1 NC_009488.1 hypothetical protein 1163941 tpr1B13 5219777 tpr1B13 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248746.1 1163279 R 357244 CDS YP_001248747.1 148284657 5219781 complement(1168113..1168502) 1 NC_009488.1 hypothetical protein 1168502 5219781 OTBS_1191 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248747.1 1168113 R 357244 CDS YP_001248748.1 148284658 5219782 1168559..1168765 1 NC_009488.1 hypothetical protein 1168765 5219782 OTBS_1192 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248748.1 1168559 D 357244 CDS YP_001248749.1 148284659 5219783 complement(1168612..1168920) 1 NC_009488.1 hypothetical protein 1168920 tpr1B14 5219783 tpr1B14 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248749.1 1168612 R 357244 CDS YP_001248750.1 148284660 5219785 1169661..1170698 1 NC_009488.1 ankyrin repeat-containing protein 1170698 ank1u7 5219785 ank1u7 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248750.1 1169661 D 357244 CDS YP_001248751.1 148284661 5219787 complement(1171956..1172918) 1 NC_009488.1 transposase and inactivated derivative 1172918 tnD 5219787 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248751.1 1171956 R 357244 CDS YP_001248752.1 148284662 5219791 complement(1175446..1175766) 1 NC_009488.1 conjugative transfer protein 1175766 trbC 5219791 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248752.1 1175446 R 357244 CDS YP_001248753.1 148284663 5219793 complement(1176776..1177012) 1 NC_009488.1 conjugative transfer protein 1177012 traV 5219793 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248753.1 1176776 R 357244 CDS YP_001248754.1 148284664 5219794 complement(1177012..1177476) 1 NC_009488.1 conjugative pilus assembly protein 1177476 traB 5219794 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248754.1 1177012 R 357244 CDS YP_001248755.1 148284665 5219795 complement(1177588..1177989) 1 NC_009488.1 hypothetical protein 1177989 tchB 5219795 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248755.1 1177588 R 357244 CDS YP_001248756.1 148284666 5219796 complement(1177986..1178537) 1 NC_009488.1 conjugative transfer protein 1178537 traE 5219796 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248756.1 1177986 R 357244 CDS YP_001248757.1 148284667 5219797 complement(1178537..1178872) 1 NC_009488.1 hypothetical protein 1178872 tchA 5219797 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248757.1 1178537 R 357244 CDS YP_001248758.1 148284668 5219798 complement(1178998..1180242) 1 NC_009488.1 phage-related integrase 1180242 int 5219798 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248758.1 1178998 R 357244 CDS YP_001248759.1 148284669 5219799 complement(1180687..1181274) 1 NC_009488.1 electron transport protein 1181274 sco2 5219799 sco2 Orientia tsutsugamushi str. Boryong electron transport protein YP_001248759.1 1180687 R 357244 CDS YP_001248760.1 148284670 5219800 complement(1181474..1181602) 1 NC_009488.1 conjugative transfer protein 1181602 traV 5219800 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248760.1 1181474 R 357244 CDS YP_001248761.1 148284671 5219807 1187569..1188237 1 NC_009488.1 DNA polymerase III epsilon chain 1188237 dnaQ 5219807 dnaQ Orientia tsutsugamushi str. Boryong DNA polymerase III epsilon chain YP_001248761.1 1187569 D 357244 CDS YP_001248762.1 148284672 5219808 1188457..1188966 1 NC_009488.1 transcriptional factor regulator 1188966 carD 5219808 carD Orientia tsutsugamushi str. Boryong transcriptional factor regulator YP_001248762.1 1188457 D 357244 CDS YP_001248763.1 148284673 5219809 1188990..1190024 1 NC_009488.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1190024 gcp 5219809 gcp Orientia tsutsugamushi str. Boryong DNA-binding/iron metalloprotein/AP endonuclease YP_001248763.1 1188990 D 357244 CDS YP_001248764.1 148284674 5219810 1190037..1190828 1 NC_009488.1 inorganic polyphosphate/ATP-NAD kinase 1190828 ppnK 5219810 ppnK Orientia tsutsugamushi str. Boryong inorganic polyphosphate/ATP-NAD kinase YP_001248764.1 1190037 D 357244 CDS YP_001248765.1 148284675 5219811 complement(1190930..1192153) 1 NC_009488.1 hypothetical protein 1192153 5219811 OTBS_1221 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248765.1 1190930 R 357244 CDS YP_001248766.1 148284676 5219812 complement(1192140..1192598) 1 NC_009488.1 transport protein 1192598 tolR 5219812 tolR Orientia tsutsugamushi str. Boryong transport protein YP_001248766.1 1192140 R 357244 CDS YP_001248767.1 148284677 5219813 complement(1192604..1193293) 1 NC_009488.1 transport protein 1193293 tolQ 5219813 tolQ Orientia tsutsugamushi str. Boryong transport protein YP_001248767.1 1192604 R 357244 CDS YP_001248768.1 148284678 5219814 1193457..1194470 1 NC_009488.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1194470 hemB 5219814 hemB Orientia tsutsugamushi str. Boryong delta-aminolevulinic acid dehydratase YP_001248768.1 1193457 D 357244 CDS YP_001248769.1 148284679 5219816 1195181..1197637 1 NC_009488.1 hypothetical protein 1197637 5219816 OTBS_1226 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248769.1 1195181 D 357244 CDS YP_001248770.1 148284680 5219818 1199209..1201014 1 NC_009488.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1201014 5219818 OTBS_1228 Orientia tsutsugamushi str. Boryong GTP-binding protein LepA YP_001248770.1 1199209 D 357244 CDS YP_001248771.1 148284681 5219826 complement(1207881..1208741) 1 NC_009488.1 hypothetical protein 1208741 5219826 OTBS_1236 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248771.1 1207881 R 357244 CDS YP_001248772.1 148284682 5219827 complement(1208820..1209287) 1 NC_009488.1 single-stranded DNA-binding protein 1209287 ssb 5219827 ssb Orientia tsutsugamushi str. Boryong single-stranded DNA-binding protein YP_001248772.1 1208820 R 357244 CDS YP_001248773.1 148284683 5219829 complement(1209651..1209980) 1 NC_009488.1 hypothetical protein 1209980 5219829 OTBS_1239 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248773.1 1209651 R 357244 CDS YP_001248774.1 148284684 5219831 complement(1211723..1212280) 1 NC_009488.1 ankyrin repeat-containing protein 1212280 ank1C10 5219831 ank1C10 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248774.1 1211723 R 357244 CDS YP_001248775.1 148284685 5219836 1215705..1216184 1 NC_009488.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1216184 greA 5219836 greA Orientia tsutsugamushi str. Boryong transcription elongation factor GreA YP_001248775.1 1215705 D 357244 CDS YP_001248776.1 148284686 5219837 1216231..1217130 1 NC_009488.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1217130 rpoH 5219837 rpoH Orientia tsutsugamushi str. Boryong RNA polymerase factor sigma-32 YP_001248776.1 1216231 D 357244 CDS YP_001248777.1 148284687 5219840 complement(1218094..1218648) 1 NC_009488.1 hypothetical protein 1218648 5219840 OTBS_1250 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248777.1 1218094 R 357244 CDS YP_001248778.1 148284688 5219841 1218910..1219107 1 NC_009488.1 hypothetical protein 1219107 5219841 OTBS_1251 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248778.1 1218910 D 357244 CDS YP_001248779.1 148284689 5219845 complement(1222433..1222801) 1 NC_009488.1 conjugative transfer protein 1222801 traC 5219845 traC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248779.1 1222433 R 357244 CDS YP_001248780.1 148284690 5219846 complement(1222782..1223111) 1 NC_009488.1 conjugative transfer protein 1223111 traV 5219846 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248780.1 1222782 R 357244 CDS YP_001248781.1 148284691 5219847 complement(1223111..1223575) 1 NC_009488.1 conjugative pilus assembly protein 1223575 traB 5219847 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248781.1 1223111 R 357244 CDS YP_001248782.1 148284692 5219848 complement(1223687..1224088) 1 NC_009488.1 hypothetical protein 1224088 tchB 5219848 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248782.1 1223687 R 357244 CDS YP_001248783.1 148284693 5219850 complement(1224636..1224971) 1 NC_009488.1 hypothetical protein 1224971 tchA 5219850 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248783.1 1224636 R 357244 CDS YP_001248784.1 148284694 5219851 complement(1225097..1226341) 1 NC_009488.1 phage-related integrase 1226341 int 5219851 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248784.1 1225097 R 357244 CDS YP_001248785.1 148284695 5219852 complement(1226466..1226666) 1 NC_009488.1 hypothetical protein 1226666 rhp7 5219852 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248785.1 1226466 R 357244 CDS YP_001248786.1 148284696 5219857 complement(1229193..1230953) 1 NC_009488.1 hypothetical protein 1230953 5219857 OTBS_1267 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248786.1 1229193 R 357244 CDS YP_001248787.1 148284697 5219858 complement(1231061..1232530) 1 NC_009488.1 Fis family transcriptional regulator 1232530 ntrX 5219858 ntrX Orientia tsutsugamushi str. Boryong Fis family transcriptional regulator YP_001248787.1 1231061 R 357244 CDS YP_001248788.1 148284698 5219859 complement(1232671..1234257) 1 NC_009488.1 NtrY-like histidine kinase 1234257 ntrY 5219859 ntrY Orientia tsutsugamushi str. Boryong NtrY-like histidine kinase YP_001248788.1 1232671 R 357244 CDS YP_001248789.1 148284699 5219861 complement(1234921..1236969) 1 NC_009488.1 ComEC/Rec2 family protein 1236969 comEC/rec2 5219861 comEC/rec2 Orientia tsutsugamushi str. Boryong ComEC/Rec2 family protein YP_001248789.1 1234921 R 357244 CDS YP_001248790.1 148284700 5219862 complement(1237129..1237887) 1 NC_009488.1 hypothetical protein 1237887 5219862 OTBS_1271 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248790.1 1237129 R 357244 CDS YP_001248791.1 148284701 5219866 1241728..1242231 1 NC_009488.1 ompA-like autotransporter 1242231 rhp6 5219866 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248791.1 1241728 D 357244 CDS YP_001248792.1 148284702 5219868 complement(1243076..1243246) 1 NC_009488.1 hypothetical protein 1243246 5219868 OTBS_1277 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248792.1 1243076 R 357244 CDS YP_001248793.1 148284703 5219869 1243875..1244240 1 NC_009488.1 hypothetical protein 1244240 rhp5 5219869 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248793.1 1243875 D 357244 CDS YP_001248794.1 148284704 5219870 1244599..1244853 1 NC_009488.1 hypothetical protein 1244853 5219870 OTBS_1279 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248794.1 1244599 D 357244 CDS YP_001248795.1 148284705 5219871 1244903..1246201 1 NC_009488.1 signal transduction histidine kinase 1246201 hkp29 5219871 hkp29 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248795.1 1244903 D 357244 CDS YP_001248796.1 148284706 5219874 complement(1248761..1249216) 1 NC_009488.1 conjugative transfer protein 1249216 traD_Ti 5219874 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248796.1 1248761 R 357244 CDS YP_001248797.1 148284707 5219875 complement(1249218..1249418) 1 NC_009488.1 hypothetical protein 1249418 5219875 OTBS_1284 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248797.1 1249218 R 357244 CDS YP_001248798.1 148284708 5219878 complement(1254898..1255854) 1 NC_009488.1 conjugative transfer protein 1255854 traD_F 5219878 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248798.1 1254898 R 357244 CDS YP_001248799.1 148284709 5217666 complement(1258178..1259839) 1 NC_009488.1 conjugative transfer protein 1259839 traN 5217666 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248799.1 1258178 R 357244 CDS YP_001248800.1 148284710 5217667 complement(1259862..1260182) 1 NC_009488.1 conjugative transfer protein 1260182 trbC 5217667 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248800.1 1259862 R 357244 CDS YP_001248801.1 148284711 5217669 complement(1261260..1261448) 1 NC_009488.1 hypothetical protein 1261448 tchE 5217669 tchE Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248801.1 1261260 R 357244 CDS YP_001248802.1 148284712 5217670 complement(1261531..1262190) 1 NC_009488.1 conjugative transfer protein 1262190 traW 5217670 traW Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248802.1 1261531 R 357244 CDS YP_001248803.1 148284713 5217672 1265230..1265370 1 NC_009488.1 site-specific DNA adenine methylase 1265370 dam16 5217672 dam16 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248803.1 1265230 D 357244 CDS YP_001248804.1 148284714 5217674 complement(1266054..1266389) 1 NC_009488.1 hypothetical protein 1266389 tchA 5217674 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248804.1 1266054 R 357244 CDS YP_001248805.1 148284715 5217679 1270919..1271839 1 NC_009488.1 transposase and inactivated derivative 1271839 tnD 5217679 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248805.1 1270919 D 357244 CDS YP_001248806.1 148284716 5217681 1273081..1273650 1 NC_009488.1 hypothetical protein 1273650 5217681 OTBS_1306 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248806.1 1273081 D 357244 CDS YP_001248807.1 148284717 5217683 complement(1273903..1274895) 1 NC_009488.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1274895 gpsA 5217683 gpsA Orientia tsutsugamushi str. Boryong NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001248807.1 1273903 R 357244 CDS YP_001248808.1 148284718 5217684 complement(1274958..1276229) 1 NC_009488.1 MiaB-like tRNA modifying enzyme 1276229 miaB 5217684 miaB Orientia tsutsugamushi str. Boryong MiaB-like tRNA modifying enzyme YP_001248808.1 1274958 R 357244 CDS YP_001248809.1 148284719 5217687 complement(1277748..1278356) 1 NC_009488.1 hypothetical protein 1278356 5217687 OTBS_1311 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248809.1 1277748 R 357244 CDS YP_001248810.1 148284720 5217688 1278672..1279598 1 NC_009488.1 hypothetical protein 1279598 5217688 OTBS_1312 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248810.1 1278672 D 357244 CDS YP_001248811.1 148284721 5217689 1279591..1280919 1 NC_009488.1 NADP-dependent malic enzyme 1280919 maeA 5217689 maeA Orientia tsutsugamushi str. Boryong NADP-dependent malic enzyme YP_001248811.1 1279591 D 357244 CDS YP_001248812.1 148284722 5217693 complement(1282498..1282914) 1 NC_009488.1 hypothetical protein 1282914 5217693 OTBS_1317 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248812.1 1282498 R 357244 CDS YP_001248813.1 148284723 5217694 1283281..1284090 1 NC_009488.1 site-specific DNA adenine methylase 1284090 dam17 5217694 dam17 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248813.1 1283281 D 357244 CDS YP_001248814.1 148284724 5217695 complement(1284094..1284603) 1 NC_009488.1 ompA-like autotransporter 1284603 rhp6 5217695 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248814.1 1284094 R 357244 CDS YP_001248815.1 148284725 5217698 1286228..1286689 1 NC_009488.1 signal transduction histidine kinase 1286689 hkp30 5217698 hkp30 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248815.1 1286228 D 357244 CDS YP_001248816.1 148284726 5217701 complement(1288961..1289359) 1 NC_009488.1 conjugative transfer protein 1289359 traD_Ti 5217701 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248816.1 1288961 R 357244 CDS YP_001248817.1 148284727 5217707 complement(1298734..1299054) 1 NC_009488.1 conjugative transfer protein 1299054 trbC 5217707 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248817.1 1298734 R 357244 CDS YP_001248818.1 148284728 5217709 complement(1300011..1300301) 1 NC_009488.1 conjugative transfer protein 1300301 traV 5217709 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248818.1 1300011 R 357244 CDS YP_001248819.1 148284729 5217710 complement(1300301..1300765) 1 NC_009488.1 conjugative pilus assembly protein 1300765 traB 5217710 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248819.1 1300301 R 357244 CDS YP_001248820.1 148284730 5217711 complement(1300877..1301278) 1 NC_009488.1 hypothetical protein 1301278 tchB 5217711 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248820.1 1300877 R 357244 CDS YP_001248821.1 148284731 5217712 complement(1301275..1301826) 1 NC_009488.1 conjugative transfer protein 1301826 traE 5217712 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248821.1 1301275 R 357244 CDS YP_001248822.1 148284732 5217713 complement(1301826..1302161) 1 NC_009488.1 hypothetical protein 1302161 tchA 5217713 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248822.1 1301826 R 357244 CDS YP_001248823.1 148284733 5217714 complement(1302287..1303531) 1 NC_009488.1 phage-related integrase 1303531 int 5217714 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248823.1 1302287 R 357244 CDS YP_001248824.1 148284734 5217715 complement(1303656..1303856) 1 NC_009488.1 hypothetical protein 1303856 rhp7 5217715 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248824.1 1303656 R 357244 CDS YP_001248825.1 148284735 5217716 1304309..1304725 1 NC_009488.1 hypothetical protein 1304725 rhp9 5217716 rhp9 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248825.1 1304309 D 357244 CDS YP_001248826.1 148284736 5217718 1306423..1306713 1 NC_009488.1 hypothetical protein 1306713 rhp9 5217718 rhp9 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248826.1 1306423 D 357244 CDS YP_001248827.1 148284737 5217720 complement(1307956..1308807) 1 NC_009488.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1308807 mreC 5217720 mreC Orientia tsutsugamushi str. Boryong rod shape-determining protein MreC YP_001248827.1 1307956 R 357244 CDS YP_001248828.1 148284738 5217721 complement(1308814..1309881) 1 NC_009488.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1309881 mreB 5217721 mreB Orientia tsutsugamushi str. Boryong rod shape-determining protein MreB YP_001248828.1 1308814 R 357244 CDS YP_001248829.1 148284739 5217722 complement(1309982..1310212) 1 NC_009488.1 dihydrolipoamide acetyltransferase component 1310212 sucB 5217722 sucB Orientia tsutsugamushi str. Boryong dihydrolipoamide acetyltransferase component YP_001248829.1 1309982 R 357244 CDS YP_001248830.1 148284740 5217723 complement(1310182..1310802) 1 NC_009488.1 hypothetical protein 1310802 5217723 OTBS_1347 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248830.1 1310182 R 357244 CDS YP_001248831.1 148284741 5217726 complement(1312937..1313557) 1 NC_009488.1 ATP-dependent protease proteolytic subunit 1313557 clpP 5217726 clpP Orientia tsutsugamushi str. Boryong ATP-dependent protease proteolytic subunit YP_001248831.1 1312937 R 357244 CDS YP_001248832.1 148284742 5217730 complement(1316094..1316888) 1 NC_009488.1 methionine aminopeptidase 1316888 map 5217730 map Orientia tsutsugamushi str. Boryong methionine aminopeptidase YP_001248832.1 1316094 R 357244 CDS YP_001248833.1 148284743 5217741 1324959..1325696 1 NC_009488.1 CzcR-like response regulator 1325696 czcR 5217741 czcR Orientia tsutsugamushi str. Boryong CzcR-like response regulator YP_001248833.1 1324959 D 357244 CDS YP_001248834.1 148284744 5217742 1325832..1327568 1 NC_009488.1 metallo-beta-lactamase 1327568 5217742 OTBS_1365 Orientia tsutsugamushi str. Boryong metallo-beta-lactamase YP_001248834.1 1325832 D 357244 CDS YP_001248835.1 148284745 5217743 1327651..1327950 1 NC_009488.1 glutamyl-tRNA(Gln) amidotransferase subunit C 1327950 gatC 5217743 gatC Orientia tsutsugamushi str. Boryong glutamyl-tRNA(Gln) amidotransferase subunit C YP_001248835.1 1327651 D 357244 CDS YP_001248836.1 148284746 5217744 1327950..1329428 1 NC_009488.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1329428 gatA 5217744 gatA Orientia tsutsugamushi str. Boryong aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001248836.1 1327950 D 357244 CDS YP_001248837.1 148284747 5217745 1329431..1330891 1 NC_009488.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1330891 gatB 5217745 gatB Orientia tsutsugamushi str. Boryong aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001248837.1 1329431 D 357244 CDS YP_001248838.1 148284748 5217749 1335617..1336312 1 NC_009488.1 hypothetical protein 1336312 5217749 OTBS_1372 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248838.1 1335617 D 357244 CDS YP_001248839.1 148284749 5217753 1339446..1340840 1 NC_009488.1 hypothetical protein 1340840 5217753 OTBS_1376 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248839.1 1339446 D 357244 CDS YP_001248840.1 148284750 5217756 1341886..1345143 1 NC_009488.1 Na+/proline symporter 1345143 5217756 OTBS_1379 Orientia tsutsugamushi str. Boryong Na+/proline symporter YP_001248840.1 1341886 D 357244 CDS YP_001248841.1 148284751 5217769 1353712..1354317 1 NC_009488.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1354317 ccmA 5217769 ccmA Orientia tsutsugamushi str. Boryong cytochrome c biogenesis protein CcmA YP_001248841.1 1353712 D 357244 CDS YP_001248842.1 148284752 5217770 1354314..1354964 1 NC_009488.1 heme exporter protein B 1354964 ccmB 5217770 ccmB Orientia tsutsugamushi str. Boryong heme exporter protein B YP_001248842.1 1354314 D 357244 CDS YP_001248843.1 148284753 5217772 1355118..1356257 1 NC_009488.1 hypothetical protein 1356257 5217772 OTBS_1395 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248843.1 1355118 D 357244 CDS YP_001248844.1 148284754 5217773 1356342..1357034 1 NC_009488.1 ubiquinol-cytochrome c reductase, iron-sulfur subunit 1357034 petA 5217773 petA Orientia tsutsugamushi str. Boryong ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001248844.1 1356342 D 357244 CDS YP_001248845.1 148284755 5217774 1357189..1358385 1 NC_009488.1 ubiquinol-cytochrome c reductase, cytochrome b 1358385 petB 5217774 petB Orientia tsutsugamushi str. Boryong ubiquinol-cytochrome c reductase, cytochrome b YP_001248845.1 1357189 D 357244 CDS YP_001248846.1 148284756 5217776 complement(1358798..1358947) 1 NC_009488.1 hypothetical protein 1358947 5217776 OTBS_1399 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248846.1 1358798 R 357244 CDS YP_001248847.1 148284757 5217779 1360018..1362366 1 NC_009488.1 hypothetical protein 1362366 rhp2 5217779 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248847.1 1360018 D 357244 CDS YP_001248848.1 148284758 5217784 complement(1365398..1365538) 1 NC_009488.1 hypothetical protein 1365538 5217784 OTBS_1407 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248848.1 1365398 R 357244 CDS YP_001248849.1 148284759 5217785 complement(1365614..1366420) 1 NC_009488.1 uracil-DNA glycosylase 1366420 5217785 OTBS_1408 Orientia tsutsugamushi str. Boryong uracil-DNA glycosylase YP_001248849.1 1365614 R 357244 CDS YP_001248850.1 148284760 5217787 1368394..1369638 1 NC_009488.1 phage-related integrase 1369638 int 5217787 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248850.1 1368394 D 357244 CDS YP_001248851.1 148284761 5217791 complement(1372234..1373175) 1 NC_009488.1 acetylglutamate kinase 1373175 argB 5217791 argB Orientia tsutsugamushi str. Boryong acetylglutamate kinase YP_001248851.1 1372234 R 357244 CDS YP_001248852.1 148284762 5217792 complement(1373123..1373683) 1 NC_009488.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1373683 engB 5217792 engB Orientia tsutsugamushi str. Boryong ribosome biogenesis GTP-binding protein YsxC YP_001248852.1 1373123 R 357244 CDS YP_001248853.1 148284763 5217793 complement(1373743..1375446) 1 NC_009488.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 1375446 yidC 5217793 yidC Orientia tsutsugamushi str. Boryong inner membrane protein translocase component YidC YP_001248853.1 1373743 R 357244 CDS YP_001248854.1 148284764 5217795 complement(1377193..1378611) 1 NC_009488.1 cationic amino acid transporter-1 1378611 atrC1 5217795 atrC1 Orientia tsutsugamushi str. Boryong cationic amino acid transporter-1 YP_001248854.1 1377193 R 357244 CDS YP_001248855.1 148284765 5217796 1379020..1379427 1 NC_009488.1 hypothetical protein 1379427 5217796 OTBS_1418 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248855.1 1379020 D 357244 CDS YP_001248856.1 148284766 5217797 complement(1379457..1381880) 1 NC_009488.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1381880 gyrB 5217797 gyrB Orientia tsutsugamushi str. Boryong DNA gyrase subunit B YP_001248856.1 1379457 R 357244 CDS YP_001248857.1 148284767 5217798 1381997..1382857 1 NC_009488.1 HAD family hydrolase 1382857 5217798 OTBS_1420 Orientia tsutsugamushi str. Boryong HAD family hydrolase YP_001248857.1 1381997 D 357244 CDS YP_001248858.1 148284768 5217800 1383420..1383749 1 NC_009488.1 multisubunit Na+/H+ antiporter, MnhG subunit 1383749 mnhG 5217800 mnhG Orientia tsutsugamushi str. Boryong multisubunit Na+/H+ antiporter, MnhG subunit YP_001248858.1 1383420 D 357244 CDS YP_001248859.1 148284769 5217801 1383746..1384336 1 NC_009488.1 multisubunit Na+/H+ antiporter, membrane bound hydrogenase, MbhE subunit 1384336 mbhE 5217801 mbhE Orientia tsutsugamushi str. Boryong multisubunit Na+/H+ antiporter, membrane bound hydrogenase, MbhE subunit YP_001248859.1 1383746 D 357244 CDS YP_001248860.1 148284770 5217802 1384357..1384791 1 NC_009488.1 multisubunit Na+/H+ antiporter, MnhB subunit 1384791 mnhB 5217802 mnhB Orientia tsutsugamushi str. Boryong multisubunit Na+/H+ antiporter, MnhB subunit YP_001248860.1 1384357 D 357244 CDS YP_001248861.1 148284771 5217803 1384769..1385170 1 NC_009488.1 multisubunit Na+/H+ antiporter, MnhC subunit 1385170 mnhC 5217803 mnhC Orientia tsutsugamushi str. Boryong multisubunit Na+/H+ antiporter, MnhC subunit YP_001248861.1 1384769 D 357244 CDS YP_001248862.1 148284772 5217804 1385163..1386653 1 NC_009488.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 1386653 nuoN2 5217804 nuoN2 Orientia tsutsugamushi str. Boryong monovalent cation/H+ antiporter subunit D YP_001248862.1 1385163 D 357244 CDS YP_001248863.1 148284773 5217805 1386663..1388135 1 NC_009488.1 NADH dehydrogenase I chain L 1388135 nuoL2 5217805 nuoL2 Orientia tsutsugamushi str. Boryong NADH dehydrogenase I chain L YP_001248863.1 1386663 D 357244 CDS YP_001248864.1 148284774 5217811 1391245..1391685 1 NC_009488.1 site-specific DNA adenine methylase 1391685 dam21 5217811 dam21 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248864.1 1391245 D 357244 CDS YP_001248865.1 148284775 5217812 complement(1391975..1394113) 1 NC_009488.1 ankyrin repeat-containing protein 1394113 ank2A7 5217812 ank2A7 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248865.1 1391975 R 357244 CDS YP_001248866.1 148284776 5217815 1398553..1398888 1 NC_009488.1 hypothetical protein 1398888 tchA 5217815 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248866.1 1398553 D 357244 CDS YP_001248867.1 148284777 5217817 1399437..1399838 1 NC_009488.1 hypothetical protein 1399838 tchB 5217817 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248867.1 1399437 D 357244 CDS YP_001248868.1 148284778 5217818 1399950..1400414 1 NC_009488.1 conjugative pilus assembly protein 1400414 traB 5217818 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248868.1 1399950 D 357244 CDS YP_001248869.1 148284779 5217819 1400414..1400704 1 NC_009488.1 conjugative transfer protein 1400704 traV 5217819 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248869.1 1400414 D 357244 CDS YP_001248870.1 148284780 5217821 1401661..1401981 1 NC_009488.1 conjugative transfer protein 1401981 trbC 5217821 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248870.1 1401661 D 357244 CDS YP_001248871.1 148284781 5217823 1403675..1404379 1 NC_009488.1 conjugative pilus assembly protein 1404379 traF 5217823 traF Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248871.1 1403675 D 357244 CDS YP_001248872.1 148284782 5217826 1405801..1406946 1 NC_009488.1 conjugative transfer protein 1406946 traD_F 5217826 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248872.1 1405801 D 357244 CDS YP_001248873.1 148284783 5217827 complement(1406948..1407859) 1 NC_009488.1 transposase and inactivated derivative 1407859 tnE 5217827 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248873.1 1406948 R 357244 CDS YP_001248874.1 148284784 5217829 1412723..1413121 1 NC_009488.1 conjugative transfer protein 1413121 traD_Ti 5217829 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248874.1 1412723 D 357244 CDS YP_001248875.1 148284785 5217830 1413209..1413787 1 NC_009488.1 hypothetical protein 1413787 rhp4 5217830 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248875.1 1413209 D 357244 CDS YP_001248876.1 148284786 5217831 complement(1413865..1414440) 1 NC_009488.1 spoT-like ppGpp hydrolase 1414440 spoT31 5217831 spoT31 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248876.1 1413865 R 357244 CDS YP_001248877.1 148284787 5217832 complement(1414541..1416142) 1 NC_009488.1 signal transduction histidine kinase 1416142 hkp31 5217832 hkp31 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248877.1 1414541 R 357244 CDS YP_001248878.1 148284788 5217835 1417306..1419174 1 NC_009488.1 hypothetical protein 1419174 5217835 OTBS_1456 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248878.1 1417306 D 357244 CDS YP_001248879.1 148284789 5217836 complement(1419418..1419594) 1 NC_009488.1 hypothetical protein 1419594 rhp5 5217836 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248879.1 1419418 R 357244 CDS YP_001248880.1 148284790 5217838 complement(1420960..1421463) 1 NC_009488.1 ompA-like autotransporter 1421463 rhp6 5217838 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001248880.1 1420960 R 357244 CDS YP_001248881.1 148284791 5217842 complement(1425096..1425314) 1 NC_009488.1 hypothetical protein 1425314 5217842 OTBS_1463 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248881.1 1425096 R 357244 CDS YP_001248882.1 148284792 5217846 complement(1428462..1429820) 1 NC_009488.1 hypothetical protein 1429820 5217846 OTBS_1467 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248882.1 1428462 R 357244 CDS YP_001248883.1 148284793 5217847 complement(1429874..1430554) 1 NC_009488.1 hypothetical protein 1430554 5217847 OTBS_1468 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248883.1 1429874 R 357244 CDS YP_001248884.1 148284794 5217852 complement(1433607..1434488) 1 NC_009488.1 conjugative transfer protein 1434488 traD_F 5217852 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248884.1 1433607 R 357244 CDS YP_001248885.1 148284795 5217856 complement(1436620..1438281) 1 NC_009488.1 conjugative transfer protein 1438281 traN 5217856 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248885.1 1436620 R 357244 CDS YP_001248886.1 148284796 5217857 complement(1438304..1438624) 1 NC_009488.1 conjugative transfer protein 1438624 trbC 5217857 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248886.1 1438304 R 357244 CDS YP_001248887.1 148284797 5217859 complement(1439702..1439890) 1 NC_009488.1 hypothetical protein 1439890 tchE 5217859 tchE Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248887.1 1439702 R 357244 CDS YP_001248888.1 148284798 5217860 complement(1439973..1440632) 1 NC_009488.1 conjugative transfer protein 1440632 traW 5217860 traW Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248888.1 1439973 R 357244 CDS YP_001248889.1 148284799 5217865 complement(1444619..1446505) 1 NC_009488.1 cytochrome c-type biogenesis 1446505 ccmF 5217865 ccmF Orientia tsutsugamushi str. Boryong cytochrome c-type biogenesis YP_001248889.1 1444619 R 357244 CDS YP_001248890.1 148284800 5217866 complement(1446495..1447763) 1 NC_009488.1 Mg2+/Co2+ transporter 1447763 corB 5217866 corB Orientia tsutsugamushi str. Boryong Mg2+/Co2+ transporter YP_001248890.1 1446495 R 357244 CDS YP_001248891.1 148284801 5217868 1449292..1449933 1 NC_009488.1 superoxide dismutase 1449933 sodB 5217868 sodB Orientia tsutsugamushi str. Boryong superoxide dismutase YP_001248891.1 1449292 D 357244 CDS YP_001248892.1 148284802 5217869 1449974..1452865 1 NC_009488.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1452865 sucA 5217869 sucA Orientia tsutsugamushi str. Boryong 2-oxoglutarate dehydrogenase E1 YP_001248892.1 1449974 D 357244 CDS YP_001248893.1 148284803 5217870 1452865..1454142 1 NC_009488.1 2-oxoglutarate dehydrogenase E2 1454142 sucB 5217870 sucB Orientia tsutsugamushi str. Boryong 2-oxoglutarate dehydrogenase E2 YP_001248893.1 1452865 D 357244 CDS YP_001248894.1 148284804 5217871 1454148..1455626 1 NC_009488.1 hypothetical protein 1455626 5217871 OTBS_1492 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248894.1 1454148 D 357244 CDS YP_001248895.1 148284805 5217872 1455919..1457220 1 NC_009488.1 proline/betaine transporter 1457220 proP 5217872 proP Orientia tsutsugamushi str. Boryong proline/betaine transporter YP_001248895.1 1455919 D 357244 CDS YP_001248896.1 148284806 5217873 1457378..1457626 1 NC_009488.1 hypothetical protein 1457626 5217873 OTBS_1494 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248896.1 1457378 D 357244 CDS YP_001248897.1 148284807 5217874 complement(1458094..1458918) 1 NC_009488.1 cytochrome c oxidase subunit III 1458918 coxC 5217874 coxC Orientia tsutsugamushi str. Boryong cytochrome c oxidase subunit III YP_001248897.1 1458094 R 357244 CDS YP_001248898.1 148284808 5217875 complement(1459100..1460077) 1 NC_009488.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1460077 ruvB 5217875 ruvB Orientia tsutsugamushi str. Boryong Holliday junction DNA helicase RuvB YP_001248898.1 1459100 R 357244 CDS YP_001248899.1 148284809 5217876 complement(1460077..1460694) 1 NC_009488.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1460694 ruvA 5217876 ruvA Orientia tsutsugamushi str. Boryong Holliday junction DNA helicase RuvA YP_001248899.1 1460077 R 357244 CDS YP_001248900.1 148284810 5217877 complement(1460939..1463080) 1 NC_009488.1 hypothetical protein 1463080 5217877 OTBS_1498 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248900.1 1460939 R 357244 CDS YP_001248901.1 148284811 5217878 complement(1463464..1464663) 1 NC_009488.1 Bcr/CflA subfamily drug resistance transporter 1464663 bcr 5217878 bcr Orientia tsutsugamushi str. Boryong Bcr/CflA subfamily drug resistance transporter YP_001248901.1 1463464 R 357244 CDS YP_001248902.1 148284812 5217882 1466525..1469962 1 NC_009488.1 Na+/proline symporter 1469962 5217882 OTBS_1503 Orientia tsutsugamushi str. Boryong Na+/proline symporter YP_001248902.1 1466525 D 357244 CDS YP_001248903.1 148284813 5217884 1470261..1470461 1 NC_009488.1 hypothetical protein 1470461 rhp7 5217884 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248903.1 1470261 D 357244 CDS YP_001248904.1 148284814 5217885 1470586..1471830 1 NC_009488.1 phage-related integrase 1471830 int 5217885 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248904.1 1470586 D 357244 CDS YP_001248905.1 148284815 5217886 1471956..1472291 1 NC_009488.1 hypothetical protein 1472291 tchA 5217886 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248905.1 1471956 D 357244 CDS YP_001248906.1 148284816 5217887 1472291..1472842 1 NC_009488.1 conjugative transfer protein 1472842 traE 5217887 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248906.1 1472291 D 357244 CDS YP_001248907.1 148284817 5217888 1472839..1473240 1 NC_009488.1 hypothetical protein 1473240 tchB 5217888 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248907.1 1472839 D 357244 CDS YP_001248908.1 148284818 5217889 1473391..1473816 1 NC_009488.1 conjugative pilus assembly protein 1473816 traB 5217889 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001248908.1 1473391 D 357244 CDS YP_001248909.1 148284819 5217890 1473816..1474106 1 NC_009488.1 conjugative transfer protein 1474106 traV 5217890 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248909.1 1473816 D 357244 CDS YP_001248910.1 148284820 5217892 1475063..1475383 1 NC_009488.1 conjugative transfer protein 1475383 trbC 5217892 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248910.1 1475063 D 357244 CDS YP_001248911.1 148284821 5217897 1479205..1480350 1 NC_009488.1 conjugative transfer protein 1480350 traD_F 5217897 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248911.1 1479205 D 357244 CDS YP_001248912.1 148284822 5217898 complement(1480352..1481263) 1 NC_009488.1 transposase and inactivated derivative 1481263 tnE 5217898 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001248912.1 1480352 R 357244 CDS YP_001248913.1 148284823 5217900 1482584..1484236 1 NC_009488.1 ankyrin repeat-containing protein 1484236 ank1A2 5217900 ank1A2 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248913.1 1482584 D 357244 CDS YP_001248914.1 148284824 5217902 1487505..1487903 1 NC_009488.1 conjugative transfer protein 1487903 traD_Ti 5217902 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248914.1 1487505 D 357244 CDS YP_001248915.1 148284825 5217903 complement(1487853..1488098) 1 NC_009488.1 hypothetical protein 1488098 5217903 OTBS_1524 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248915.1 1487853 R 357244 CDS YP_001248916.1 148284826 5217906 complement(1491108..1491734) 1 NC_009488.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 1491734 lipB 5217906 lipB Orientia tsutsugamushi str. Boryong lipoate-protein ligase B YP_001248916.1 1491108 R 357244 CDS YP_001248917.1 148284827 5217907 1491817..1493235 1 NC_009488.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1493235 murD 5217907 murD Orientia tsutsugamushi str. Boryong UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001248917.1 1491817 D 357244 CDS YP_001248918.1 148284828 5217908 1493242..1494369 1 NC_009488.1 cell division protein 1494369 ftsW 5217908 ftsW Orientia tsutsugamushi str. Boryong cell division protein YP_001248918.1 1493242 D 357244 CDS YP_001248919.1 148284829 5217909 1494373..1495452 1 NC_009488.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1495452 murG 5217909 murG Orientia tsutsugamushi str. Boryong UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001248919.1 1494373 D 357244 CDS YP_001248920.1 148284830 5217916 complement(1498589..1499803) 1 NC_009488.1 aspartate kinase 1499803 lysC 5217916 lysC Orientia tsutsugamushi str. Boryong aspartate kinase YP_001248920.1 1498589 R 357244 CDS YP_001248921.1 148284831 5217917 complement(1500084..1500581) 1 NC_009488.1 hypothetical protein 1500581 5217917 OTBS_1538 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248921.1 1500084 R 357244 CDS YP_001248922.1 148284832 5217918 complement(1500562..1502304) 1 NC_009488.1 glutathione-regulated potassium-efflux system protein 1502304 kefB 5217918 kefB Orientia tsutsugamushi str. Boryong glutathione-regulated potassium-efflux system protein YP_001248922.1 1500562 R 357244 CDS YP_001248923.1 148284833 5217919 1502477..1503049 1 NC_009488.1 5-formyltetrahydrofolate cyclo-ligase 1503049 ygfA 5217919 ygfA Orientia tsutsugamushi str. Boryong 5-formyltetrahydrofolate cyclo-ligase YP_001248923.1 1502477 D 357244 CDS YP_001248924.1 148284834 5217920 1503046..1503657 1 NC_009488.1 hypothetical protein 1503657 5217920 OTBS_1541 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248924.1 1503046 D 357244 CDS YP_001248925.1 148284835 5217924 1505209..1507800 1 NC_009488.1 hypothetical protein 1507800 5217924 OTBS_1545 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248925.1 1505209 D 357244 CDS YP_001248926.1 148284836 5217925 1507835..1510324 1 NC_009488.1 hypothetical protein 1510324 5217925 OTBS_1546 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248926.1 1507835 D 357244 CDS YP_001248927.1 148284837 5217930 complement(1513010..1513210) 1 NC_009488.1 hypothetical protein 1513210 rhp7 5217930 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248927.1 1513010 R 357244 CDS YP_001248928.1 148284838 5217936 complement(1514646..1516673) 1 NC_009488.1 ribonuclease E 1516673 rne 5217936 rne Orientia tsutsugamushi str. Boryong ribonuclease E YP_001248928.1 1514646 R 357244 CDS YP_001248929.1 148284839 5217937 1517444..1521610 1 NC_009488.1 spoT-like ppGpp synthetase 1521610 spoT33 5217937 spoT33 Orientia tsutsugamushi str. Boryong spoT-like ppGpp synthetase YP_001248929.1 1517444 D 357244 CDS YP_001248930.1 148284840 5217938 1522052..1524043 1 NC_009488.1 hypothetical protein 1524043 rhp2 5217938 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248930.1 1522052 D 357244 CDS YP_001248931.1 148284841 5217940 complement(1526234..1527127) 1 NC_009488.1 hypothetical protein 1527127 5217940 OTBS_1561 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248931.1 1526234 R 357244 CDS YP_001248932.1 148284842 5217942 complement(1528128..1529507) 1 NC_009488.1 ubiquinone biosynthesis protein, 2-polyprenylphenol 6-hydroxylase 1529507 ubiB 5217942 ubiB Orientia tsutsugamushi str. Boryong ubiquinone biosynthesis protein, 2-polyprenylphenol 6-hydroxylase YP_001248932.1 1528128 R 357244 CDS YP_001248933.1 148284843 5217943 1528144..1528311 1 NC_009488.1 hypothetical protein 1528311 5217943 OTBS_1564 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248933.1 1528144 D 357244 CDS YP_001248934.1 148284844 5217944 complement(1529504..1530277) 1 NC_009488.1 ubiquinone/menaquinone biosynthesis methlytransferase 1530277 ubiE 5217944 ubiE Orientia tsutsugamushi str. Boryong ubiquinone/menaquinone biosynthesis methlytransferase YP_001248934.1 1529504 R 357244 CDS YP_001248935.1 148284845 5217945 1530871..1531353 1 NC_009488.1 hypothetical protein 1531353 yhbC 5217945 yhbC Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248935.1 1530871 D 357244 CDS YP_001248936.1 148284846 5217946 1531369..1532871 1 NC_009488.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1532871 nusA 5217946 nusA Orientia tsutsugamushi str. Boryong transcription elongation factor NusA YP_001248936.1 1531369 D 357244 CDS YP_001248937.1 148284847 5217947 1533118..1535664 1 NC_009488.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1535664 infB 5217947 infB Orientia tsutsugamushi str. Boryong translation initiation factor IF-2 YP_001248937.1 1533118 D 357244 CDS YP_001248938.1 148284848 5217948 1535695..1536057 1 NC_009488.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1536057 rbfA 5217948 rbfA Orientia tsutsugamushi str. Boryong ribosome-binding factor A YP_001248938.1 1535695 D 357244 CDS YP_001248939.1 148284849 5217954 complement(1539922..1540773) 1 NC_009488.1 glutamine synthetase 1540773 glnA 5217954 glnA Orientia tsutsugamushi str. Boryong glutamine synthetase YP_001248939.1 1539922 R 357244 CDS YP_001248940.1 148284850 5217955 1540751..1541482 1 NC_009488.1 hypothetical protein 1541482 5217955 OTBS_1576 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248940.1 1540751 D 357244 CDS YP_001248941.1 148284851 5217956 1541475..1542185 1 NC_009488.1 heme exporter protein C 1542185 ccmC 5217956 ccmC Orientia tsutsugamushi str. Boryong heme exporter protein C YP_001248941.1 1541475 D 357244 CDS YP_001248942.1 148284852 5217957 1542191..1542511 1 NC_009488.1 ferredoxin 1542511 fdxA 5217957 fdxA Orientia tsutsugamushi str. Boryong ferredoxin YP_001248942.1 1542191 D 357244 CDS YP_001248943.1 148284853 5217958 1542647..1543471 1 NC_009488.1 thiol:disulfide interchange protein 1543471 dsbA 5217958 dsbA Orientia tsutsugamushi str. Boryong thiol:disulfide interchange protein YP_001248943.1 1542647 D 357244 CDS YP_001248944.1 148284854 5217960 1543600..1544127 1 NC_009488.1 hypothetical protein 1544127 5217960 OTBS_1581 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248944.1 1543600 D 357244 CDS YP_001248945.1 148284855 5217961 1544127..1544633 1 NC_009488.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1544633 rnhA 5217961 rnhA Orientia tsutsugamushi str. Boryong ribonuclease H YP_001248945.1 1544127 D 357244 CDS YP_001248946.1 148284856 5217962 1544605..1544967 1 NC_009488.1 check-maybe an arthopod gene; NADH ubiquinone oxidoreductase 17.2 kD subunit 1544967 5217962 OTBS_1583 Orientia tsutsugamushi str. Boryong NADH ubiquinone oxidoreductase 17.2 kD subunit YP_001248946.1 1544605 D 357244 CDS YP_001248947.1 148284857 5217963 1544972..1545457 1 NC_009488.1 ABC transporter substrate binding protein 1545457 5217963 OTBS_1584 Orientia tsutsugamushi str. Boryong ABC transporter substrate binding protein YP_001248947.1 1544972 D 357244 CDS YP_001248948.1 148284858 5217964 1545460..1546731 1 NC_009488.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1546731 hisS 5217964 hisS Orientia tsutsugamushi str. Boryong histidyl-tRNA synthetase YP_001248948.1 1545460 D 357244 CDS YP_001248949.1 148284859 5217965 1546743..1547231 1 NC_009488.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1547231 nusB 5217965 nusB Orientia tsutsugamushi str. Boryong transcription antitermination protein NusB YP_001248949.1 1546743 D 357244 CDS YP_001248950.1 148284860 5217968 complement(1548216..1548884) 1 NC_009488.1 glutathione S-transferase 1548884 gst 5217968 gst Orientia tsutsugamushi str. Boryong glutathione S-transferase YP_001248950.1 1548216 R 357244 CDS YP_001248951.1 148284861 5217971 1549975..1550535 1 NC_009488.1 spoT-like ppGpp hydrolase 1550535 spoT34 5217971 spoT34 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248951.1 1549975 D 357244 CDS YP_001248952.1 148284862 5217972 complement(1550613..1551182) 1 NC_009488.1 hypothetical protein 1551182 rhp4 5217972 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248952.1 1550613 R 357244 CDS YP_001248953.1 148284863 5217973 complement(1551279..1551677) 1 NC_009488.1 conjugative transfer protein 1551677 traD_Ti 5217973 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248953.1 1551279 R 357244 CDS YP_001248954.1 148284864 5217977 complement(1553379..1553537) 1 NC_009488.1 hypothetical protein 1553537 5217977 OTBS_1598 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248954.1 1553379 R 357244 CDS YP_001248955.1 148284865 5217979 complement(1553993..1554709) 1 NC_009488.1 hypothetical protein 1554709 rhp5 5217979 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248955.1 1553993 R 357244 CDS YP_001248956.1 148284866 5217980 1554986..1555156 1 NC_009488.1 hypothetical protein 1555156 5217980 OTBS_1601 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248956.1 1554986 D 357244 CDS YP_001248957.1 148284867 5217981 1555184..1555990 1 NC_009488.1 site-specific DNA adenine methylase 1555990 dam23 5217981 dam23 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248957.1 1555184 D 357244 CDS YP_001248958.1 148284868 5217982 complement(1556280..1558448) 1 NC_009488.1 ankyrin repeat-containing protein 1558448 ank2A8 5217982 ank2A8 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248958.1 1556280 R 357244 CDS YP_001248959.1 148284869 5217986 complement(1563112..1564623) 1 NC_009488.1 Mg chelatase-related protein 1564623 5217986 OTBS_1607 Orientia tsutsugamushi str. Boryong Mg chelatase-related protein YP_001248959.1 1563112 R 357244 CDS YP_001248960.1 148284870 5217990 complement(1565766..1566149) 1 NC_009488.1 hypothetical protein 1566149 5217990 OTBS_1611 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248960.1 1565766 R 357244 CDS YP_001248961.1 148284871 5217992 complement(1568544..1569515) 1 NC_009488.1 hypothetical protein 1569515 5217992 OTBS_1613 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248961.1 1568544 R 357244 CDS YP_001248962.1 148284872 5217993 complement(1569598..1570959) 1 NC_009488.1 cell division protein ftsZ 1570959 ftsZ 5217993 ftsZ Orientia tsutsugamushi str. Boryong cell division protein ftsZ YP_001248962.1 1569598 R 357244 CDS YP_001248963.1 148284873 5217994 complement(1571165..1572430) 1 NC_009488.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1572430 murA 5217994 murA Orientia tsutsugamushi str. Boryong UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001248963.1 1571165 R 357244 CDS YP_001248964.1 148284874 5217996 1573374..1574075 1 NC_009488.1 hypthetical protein 1574075 5217996 OTBS_1617 Orientia tsutsugamushi str. Boryong hypthetical protein YP_001248964.1 1573374 D 357244 CDS YP_001248965.1 148284875 5217999 1576020..1576214 1 NC_009488.1 hypothetical protein 1576214 5217999 OTBS_1619 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248965.1 1576020 D 357244 CDS YP_001248966.1 148284876 5218000 complement(1576173..1577018) 1 NC_009488.1 ribonuclease BN 1577018 rbn 5218000 rbn Orientia tsutsugamushi str. Boryong ribonuclease BN YP_001248966.1 1576173 R 357244 CDS YP_001248967.1 148284877 5218004 1578738..1578869 1 NC_009488.1 hypothetical protein 1578869 5218004 OTBS_1624 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248967.1 1578738 D 357244 CDS YP_001248968.1 148284878 5218006 complement(1579644..1579874) 1 NC_009488.1 hypothetical protein 1579874 5218006 OTBS_1626 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248968.1 1579644 R 357244 CDS YP_001248969.1 148284879 5218007 1580080..1580451 1 NC_009488.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1580451 nuoA 5218007 nuoA Orientia tsutsugamushi str. Boryong NADH dehydrogenase subunit A YP_001248969.1 1580080 D 357244 CDS YP_001248970.1 148284880 5218008 1580464..1580979 1 NC_009488.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1580979 nuoB 5218008 nuoB Orientia tsutsugamushi str. Boryong NADH dehydrogenase subunit B YP_001248970.1 1580464 D 357244 CDS YP_001248971.1 148284881 5218009 1580990..1581577 1 NC_009488.1 NADH dehydrogenase I chain C 1581577 nuoC 5218009 nuoC Orientia tsutsugamushi str. Boryong NADH dehydrogenase I chain C YP_001248971.1 1580990 D 357244 CDS YP_001248972.1 148284882 5218010 1581603..1582793 1 NC_009488.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1582793 nuoD 5218010 nuoD Orientia tsutsugamushi str. Boryong NADH dehydrogenase subunit D YP_001248972.1 1581603 D 357244 CDS YP_001248973.1 148284883 5218011 1582790..1583368 1 NC_009488.1 NADH dehydrogenase I chain E 1583368 nuoE 5218011 nuoE Orientia tsutsugamushi str. Boryong NADH dehydrogenase I chain E YP_001248973.1 1582790 D 357244 CDS YP_001248974.1 148284884 5218012 1583362..1584630 1 NC_009488.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1584630 nuoF 5218012 nuoF Orientia tsutsugamushi str. Boryong NADH dehydrogenase I subunit F YP_001248974.1 1583362 D 357244 CDS YP_001248975.1 148284885 5218013 complement(1585034..1585747) 1 NC_009488.1 hypothetical protein 1585747 5218013 OTBS_1633 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248975.1 1585034 R 357244 CDS YP_001248976.1 148284886 5218016 1586874..1588373 1 NC_009488.1 ADP/ATP carrier protein 1588373 tlc 5218016 tlc Orientia tsutsugamushi str. Boryong ADP/ATP carrier protein YP_001248976.1 1586874 D 357244 CDS YP_001248977.1 148284887 5218018 1589521..1590036 1 NC_009488.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1590036 ruvC 5218018 ruvC Orientia tsutsugamushi str. Boryong Holliday junction resolvase YP_001248977.1 1589521 D 357244 CDS YP_001248978.1 148284888 5218019 1590092..1591060 1 NC_009488.1 tRNA-dihydrouridine synthase 1591060 duS 5218019 duS Orientia tsutsugamushi str. Boryong tRNA-dihydrouridine synthase YP_001248978.1 1590092 D 357244 CDS YP_001248979.1 148284889 5218020 complement(1591089..1591427) 1 NC_009488.1 hypothetical protein 1591427 5218020 OTBS_1640 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248979.1 1591089 R 357244 CDS YP_001248980.1 148284890 5218021 1591589..1592329 1 NC_009488.1 ubiquinone biosynthesis O-methyltransferase 1592329 ubiG 5218021 ubiG Orientia tsutsugamushi str. Boryong ubiquinone biosynthesis O-methyltransferase YP_001248980.1 1591589 D 357244 CDS YP_001248981.1 148284891 5218023 complement(1593184..1594038) 1 NC_009488.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1594038 truA 5218023 truA Orientia tsutsugamushi str. Boryong tRNA pseudouridine synthase A YP_001248981.1 1593184 R 357244 CDS YP_001248982.1 148284892 5218024 1594180..1594662 1 NC_009488.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1594662 rplM 5218024 rplM Orientia tsutsugamushi str. Boryong 50S ribosomal protein L13 YP_001248982.1 1594180 D 357244 CDS YP_001248983.1 148284893 5218025 1594666..1595157 1 NC_009488.1 30S ribosomal protein S9 1595157 rpsI 5218025 rpsI Orientia tsutsugamushi str. Boryong 30S ribosomal protein S9 YP_001248983.1 1594666 D 357244 CDS YP_001248984.1 148284894 5218027 1595487..1596233 1 NC_009488.1 hypothetical protein 1596233 5218027 OTBS_1646 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248984.1 1595487 D 357244 CDS YP_001248985.1 148284895 5218036 1602390..1604540 1 NC_009488.1 ankyrin repeat-containing protein 1604540 ank2A9 5218036 ank2A9 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248985.1 1602390 D 357244 CDS YP_001248986.1 148284896 5218037 complement(1604830..1605636) 1 NC_009488.1 site-specific DNA adenine methylase 1605636 dam25 5218037 dam25 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001248986.1 1604830 R 357244 CDS YP_001248987.1 148284897 5218038 1606354..1606608 1 NC_009488.1 hypothetical protein 1606608 5218038 OTBS_1657 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248987.1 1606354 D 357244 CDS YP_001248988.1 148284898 5218039 1606658..1607956 1 NC_009488.1 signal transduction histidine kinase 1607956 hkp33 5218039 hkp33 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001248988.1 1606658 D 357244 CDS YP_001248989.1 148284899 5218040 1608090..1608665 1 NC_009488.1 spoT-like ppGpp hydrolase 1608665 spoT35 5218040 spoT35 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001248989.1 1608090 D 357244 CDS YP_001248990.1 148284900 5218043 1611638..1612423 1 NC_009488.1 exodeoxyribonuclease III 1612423 xth1 5218043 xth1 Orientia tsutsugamushi str. Boryong exodeoxyribonuclease III YP_001248990.1 1611638 D 357244 CDS YP_001248991.1 148284901 5218044 complement(1612465..1612863) 1 NC_009488.1 conjugative transfer protein 1612863 traD_Ti 5218044 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248991.1 1612465 R 357244 CDS YP_001248992.1 148284902 5218047 complement(1619283..1620257) 1 NC_009488.1 hypothetical protein 1620257 tpr1B16 5218047 tpr1B16 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248992.1 1619283 R 357244 CDS YP_001248993.1 148284903 5218050 complement(1622236..1622556) 1 NC_009488.1 conjugative transfer protein 1622556 trbC 5218050 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248993.1 1622236 R 357244 CDS YP_001248994.1 148284904 5218052 complement(1623513..1623803) 1 NC_009488.1 conjugative transfer protein 1623803 traV 5218052 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248994.1 1623513 R 357244 CDS YP_001248995.1 148284905 5218054 complement(1624379..1624780) 1 NC_009488.1 hypothetical protein 1624780 tchB 5218054 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248995.1 1624379 R 357244 CDS YP_001248996.1 148284906 5218055 complement(1624777..1625328) 1 NC_009488.1 conjugative transfer protein 1625328 traE 5218055 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001248996.1 1624777 R 357244 CDS YP_001248997.1 148284907 5218056 complement(1625328..1625663) 1 NC_009488.1 hypothetical protein 1625663 tchA 5218056 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001248997.1 1625328 R 357244 CDS YP_001248998.1 148284908 5218057 complement(1625789..1626532) 1 NC_009488.1 phage-related integrase 1626532 int 5218057 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001248998.1 1625789 R 357244 CDS YP_001248999.1 148284909 5218060 1628200..1629372 1 NC_009488.1 ankyrin repeat-containing protein 1629372 ank1B3 5218060 ank1B3 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001248999.1 1628200 D 357244 CDS YP_001249000.1 148284910 5218063 1633156..1634943 1 NC_009488.1 hypothetical protein 1634943 5218063 OTBS_1682 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249000.1 1633156 D 357244 CDS YP_001249001.1 148284911 5218064 1635074..1636264 1 NC_009488.1 HK97 family phage portal protein 1636264 5218064 OTBS_1683 Orientia tsutsugamushi str. Boryong HK97 family phage portal protein YP_001249001.1 1635074 D 357244 CDS YP_001249002.1 148284912 5218065 1636283..1636549 1 NC_009488.1 hypothetical protein 1636549 5218065 OTBS_1684 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249002.1 1636283 D 357244 CDS YP_001249003.1 148284913 5218066 complement(1636970..1637209) 1 NC_009488.1 transcriptional regulator 1637209 5218066 OTBS_1685 Orientia tsutsugamushi str. Boryong transcriptional regulator YP_001249003.1 1636970 R 357244 CDS YP_001249004.1 148284914 5218067 1637388..1638968 1 NC_009488.1 ompA-like, autotransporter 1638968 rhp8 5218067 rhp8 Orientia tsutsugamushi str. Boryong ompA-like, autotransporter YP_001249004.1 1637388 D 357244 CDS YP_001249005.1 148284915 5218071 1640706..1641392 1 NC_009488.1 ankyrin repeat-containing protein 1641392 ank2A10 5218071 ank2A10 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249005.1 1640706 D 357244 CDS YP_001249006.1 148284916 5218072 1641865..1642935 1 NC_009488.1 hypothetical protein 1642935 5218072 OTBS_1690 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249006.1 1641865 D 357244 CDS YP_001249007.1 148284917 5218073 complement(1643028..1643252) 1 NC_009488.1 hypothetical protein 1643252 5218073 OTBS_1691 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249007.1 1643028 R 357244 CDS YP_001249008.1 148284918 5218077 complement(1648459..1649703) 1 NC_009488.1 phage-related integrase 1649703 int 5218077 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001249008.1 1648459 R 357244 CDS YP_001249009.1 148284919 5218078 1650326..1650676 1 NC_009488.1 succinate dehydrogenase, cytochrome b556 subunit 1650676 sdhC 5218078 sdhC Orientia tsutsugamushi str. Boryong succinate dehydrogenase, cytochrome b556 subunit YP_001249009.1 1650326 D 357244 CDS YP_001249010.1 148284920 5218079 1650707..1651096 1 NC_009488.1 succinate dehydrogenase hydrophobic membrane anchor protein 1651096 sdhD 5218079 sdhD Orientia tsutsugamushi str. Boryong succinate dehydrogenase hydrophobic membrane anchor protein YP_001249010.1 1650707 D 357244 CDS YP_001249011.1 148284921 5218080 1651291..1653078 1 NC_009488.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1653078 sdhA 5218080 sdhA Orientia tsutsugamushi str. Boryong succinate dehydrogenase flavoprotein subunit YP_001249011.1 1651291 D 357244 CDS YP_001249012.1 148284922 5218081 1653107..1653898 1 NC_009488.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1653898 sdhB 5218081 sdhB Orientia tsutsugamushi str. Boryong succinate dehydrogenase iron-sulfur subunit YP_001249012.1 1653107 D 357244 CDS YP_001249013.1 148284923 5218084 1655797..1656537 1 NC_009488.1 signal peptidase I 1656537 lepB 5218084 lepB Orientia tsutsugamushi str. Boryong signal peptidase I YP_001249013.1 1655797 D 357244 CDS YP_001249014.1 148284924 5218085 1656578..1657333 1 NC_009488.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1657333 rnc 5218085 rnc Orientia tsutsugamushi str. Boryong ribonuclease III YP_001249014.1 1656578 D 357244 CDS YP_001249015.1 148284925 5218088 complement(1659053..1662526) 1 NC_009488.1 Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase 1662526 aas 5218088 aas Orientia tsutsugamushi str. Boryong acylglycerophosphoethanolamine acyltransferase YP_001249015.1 1659053 R 357244 CDS YP_001249016.1 148284926 5218089 complement(1662845..1663507) 1 NC_009488.1 esterase 1663507 5218089 OTBS_1707 Orientia tsutsugamushi str. Boryong esterase YP_001249016.1 1662845 R 357244 CDS YP_001249017.1 148284927 5218090 complement(1663474..1664112) 1 NC_009488.1 endonuclease III 1664112 nth 5218090 nth Orientia tsutsugamushi str. Boryong endonuclease III YP_001249017.1 1663474 R 357244 CDS YP_001249018.1 148284928 5218091 1664167..1664541 1 NC_009488.1 glutaredoxin-related protein 1664541 grlA 5218091 grlA Orientia tsutsugamushi str. Boryong glutaredoxin-related protein YP_001249018.1 1664167 D 357244 CDS YP_001249019.1 148284929 5218092 1664602..1665150 1 NC_009488.1 hypothetical protein 1665150 5218092 OTBS_1710 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249019.1 1664602 D 357244 CDS YP_001249020.1 148284930 5218094 1666183..1666344 1 NC_009488.1 hypothetical protein 1666344 5218094 OTBS_1712 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249020.1 1666183 D 357244 CDS YP_001249021.1 148284931 5218096 complement(1666414..1667214) 1 NC_009488.1 hypothetical protein 1667214 5218096 OTBS_1714 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249021.1 1666414 R 357244 CDS YP_001249022.1 148284932 5218097 1667484..1668401 1 NC_009488.1 p34 protein/ cation transporter 1668401 p34 5218097 p34 Orientia tsutsugamushi str. Boryong p34 protein/ cation transporter YP_001249022.1 1667484 D 357244 CDS YP_001249023.1 148284933 5218098 1668457..1668924 1 NC_009488.1 cytosine deaminase 1668924 codA 5218098 codA Orientia tsutsugamushi str. Boryong cytosine deaminase YP_001249023.1 1668457 D 357244 CDS YP_001249024.1 148284934 5218099 1669002..1671098 1 NC_009488.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1671098 ligA 5218099 ligA Orientia tsutsugamushi str. Boryong NAD-dependent DNA ligase LigA YP_001249024.1 1669002 D 357244 CDS YP_001249025.1 148284935 5218100 1671105..1672877 1 NC_009488.1 aminopeptidase 1672877 5218100 OTBS_1718 Orientia tsutsugamushi str. Boryong aminopeptidase YP_001249025.1 1671105 D 357244 CDS YP_001249026.1 148284936 5218102 complement(1673512..1673670) 1 NC_009488.1 hypothetical protein 1673670 5218102 OTBS_1720 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249026.1 1673512 R 357244 CDS YP_001249027.1 148284937 5218105 1674930..1675877 1 NC_009488.1 signal transduction histidine kinase 1675877 hkp35 5218105 hkp35 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249027.1 1674930 D 357244 CDS YP_001249028.1 148284938 5218108 1676815..1678059 1 NC_009488.1 phage-related integrase 1678059 int 5218108 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001249028.1 1676815 D 357244 CDS YP_001249029.1 148284939 5218109 1678185..1678520 1 NC_009488.1 hypothetical protein 1678520 tchA 5218109 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249029.1 1678185 D 357244 CDS YP_001249030.1 148284940 5218110 1678520..1679071 1 NC_009488.1 conjugative transfer protein 1679071 traE 5218110 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249030.1 1678520 D 357244 CDS YP_001249031.1 148284941 5218111 1679068..1679469 1 NC_009488.1 hypothetical protein 1679469 tchB 5218111 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249031.1 1679068 D 357244 CDS YP_001249032.1 148284942 5218112 1679581..1680045 1 NC_009488.1 conjugative pilus assembly protein 1680045 traB 5218112 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001249032.1 1679581 D 357244 CDS YP_001249033.1 148284943 5218113 1680045..1680335 1 NC_009488.1 conjugative transfer protein 1680335 traV 5218113 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249033.1 1680045 D 357244 CDS YP_001249034.1 148284944 5218115 1681292..1681612 1 NC_009488.1 conjugative transfer protein 1681612 trbC 5218115 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249034.1 1681292 D 357244 CDS YP_001249035.1 148284945 5218120 1685432..1686577 1 NC_009488.1 conjugative transfer protein 1686577 traD_F 5218120 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249035.1 1685432 D 357244 CDS YP_001249036.1 148284946 5218121 complement(1686579..1687490) 1 NC_009488.1 transposase and inactivated derivative 1687490 tnE 5218121 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001249036.1 1686579 R 357244 CDS YP_001249037.1 148284947 5218124 1692287..1692742 1 NC_009488.1 conjugative transfer protein 1692742 traD_Ti 5218124 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249037.1 1692287 D 357244 CDS YP_001249038.1 148284948 5218125 1692837..1693385 1 NC_009488.1 hypothetical protein 1693385 rhp4 5218125 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249038.1 1692837 D 357244 CDS YP_001249039.1 148284949 5218126 complement(1693466..1694350) 1 NC_009488.1 hypothetical protein 1694350 5218126 OTBS_1744 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249039.1 1693466 R 357244 CDS YP_001249040.1 148284950 5218127 complement(1694484..1695059) 1 NC_009488.1 spoT-like ppGpp hydrolase 1695059 spoT39 5218127 spoT39 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001249040.1 1694484 R 357244 CDS YP_001249041.1 148284951 5218128 complement(1695160..1696761) 1 NC_009488.1 signal transduction histidine kinase 1696761 hkp37 5218128 hkp37 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249041.1 1695160 R 357244 CDS YP_001249042.1 148284952 5218131 1697925..1699793 1 NC_009488.1 hypothetical protein 1699793 5218131 OTBS_1749 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249042.1 1697925 D 357244 CDS YP_001249043.1 148284953 5218132 complement(1700037..1700213) 1 NC_009488.1 hypothetical protein 1700213 rhp5 5218132 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249043.1 1700037 R 357244 CDS YP_001249044.1 148284954 5218134 complement(1701579..1702082) 1 NC_009488.1 ompA-like autotransporter 1702082 rhp6 5218134 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001249044.1 1701579 R 357244 CDS YP_001249045.1 148284955 5218135 complement(1702183..1702827) 1 NC_009488.1 ankyrin repeat-containing protein 1702827 ank1C12 5218135 ank1C12 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249045.1 1702183 R 357244 CDS YP_001249046.1 148284956 5218137 complement(1703557..1705512) 1 NC_009488.1 ankyrin repeat-containing protein 1705512 ank1u8 5218137 ank1u8 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249046.1 1703557 R 357244 CDS YP_001249047.1 148284957 5218139 complement(1706000..1706356) 1 NC_009488.1 hypothetical protein 1706356 5218139 OTBS_1757 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249047.1 1706000 R 357244 CDS YP_001249048.1 148284958 5218142 1708150..1708530 1 NC_009488.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1708530 yajC 5218142 yajC Orientia tsutsugamushi str. Boryong preprotein translocase subunit YajC YP_001249048.1 1708150 D 357244 CDS YP_001249049.1 148284959 5218143 1708527..1710089 1 NC_009488.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1710089 secD 5218143 secD Orientia tsutsugamushi str. Boryong preprotein translocase subunit SecD YP_001249049.1 1708527 D 357244 CDS YP_001249050.1 148284960 5218148 complement(1712685..1713887) 1 NC_009488.1 aspartate aminotransferase 1713887 aatA 5218148 aatA Orientia tsutsugamushi str. Boryong aspartate aminotransferase YP_001249050.1 1712685 R 357244 CDS YP_001249051.1 148284961 5218149 1713996..1715033 1 NC_009488.1 hypothetical protein 1715033 tpr1B17 5218149 tpr1B17 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249051.1 1713996 D 357244 CDS YP_001249052.1 148284962 5218150 1715093..1715926 1 NC_009488.1 VacJ-like lipoprotein 1715926 vacJ 5218150 vacJ Orientia tsutsugamushi str. Boryong VacJ-like lipoprotein YP_001249052.1 1715093 D 357244 CDS YP_001249053.1 148284963 5218151 1715923..1716513 1 NC_009488.1 hypothetical protein 1716513 5218151 OTBS_1769 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249053.1 1715923 D 357244 CDS YP_001249054.1 148284964 5218153 1717783..1718295 1 NC_009488.1 hypothetical protein 1718295 5218153 OTBS_1771 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249054.1 1717783 D 357244 CDS YP_001249055.1 148284965 5218154 1718353..1719078 1 NC_009488.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1719078 recO 5218154 recO Orientia tsutsugamushi str. Boryong DNA repair protein RecO YP_001249055.1 1718353 D 357244 CDS YP_001249056.1 148284966 5218161 complement(1721828..1721980) 1 NC_009488.1 conjugative transfer protein 1721980 traW 5218161 traW Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249056.1 1721828 R 357244 CDS YP_001249057.1 148284967 5218162 complement(1722051..1722374) 1 NC_009488.1 hypothetical protein 1722374 5218162 OTBS_1780 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249057.1 1722051 R 357244 CDS YP_001249058.1 148284968 5218163 complement(1722413..1723093) 1 NC_009488.1 DNA repair protein 1723093 radC 5218163 radC Orientia tsutsugamushi str. Boryong DNA repair protein YP_001249058.1 1722413 R 357244 CDS YP_001249059.1 148284969 5218164 1723345..1723716 1 NC_009488.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1723716 rpsL 5218164 rpsL Orientia tsutsugamushi str. Boryong 30S ribosomal protein S12 YP_001249059.1 1723345 D 357244 CDS YP_001249060.1 148284970 5218165 1723740..1724261 1 NC_009488.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1724261 rpsG 5218165 rpsG Orientia tsutsugamushi str. Boryong 30S ribosomal protein S7 YP_001249060.1 1723740 D 357244 CDS YP_001249061.1 148284971 5218166 1724265..1726385 1 NC_009488.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1726385 fusA 5218166 fusA Orientia tsutsugamushi str. Boryong elongation factor G YP_001249061.1 1724265 D 357244 CDS YP_001249062.1 148284972 5218167 1726594..1728117 1 NC_009488.1 30S ribosomal protein S1 1728117 rpsA 5218167 rpsA Orientia tsutsugamushi str. Boryong 30S ribosomal protein S1 YP_001249062.1 1726594 D 357244 CDS YP_001249063.1 148284973 5218169 complement(1729526..1730392) 1 NC_009488.1 transposase and inactivated derivative 1730392 tnB 5218169 tnB Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001249063.1 1729526 R 357244 CDS YP_001249064.1 148284974 5218170 complement(1731238..1731459) 1 NC_009488.1 cold shock-like protein 1731459 cspA 5218170 cspA Orientia tsutsugamushi str. Boryong cold shock-like protein YP_001249064.1 1731238 R 357244 CDS YP_001249065.1 148284975 5218175 1733207..1734073 1 NC_009488.1 gcvT-like aminomethyltransferase 1734073 gcvT 5218175 gcvT Orientia tsutsugamushi str. Boryong gcvT-like aminomethyltransferase YP_001249065.1 1733207 D 357244 CDS YP_001249066.1 148284976 5218179 1736861..1737232 1 NC_009488.1 protein kinase C inhibitor 1 1737232 pkcI 5218179 pkcI Orientia tsutsugamushi str. Boryong protein kinase C inhibitor 1 YP_001249066.1 1736861 D 357244 CDS YP_001249067.1 148284977 5218180 1737280..1738329 1 NC_009488.1 aspartate-semialdehyde dehydrogenase 1738329 asd 5218180 asd Orientia tsutsugamushi str. Boryong aspartate-semialdehyde dehydrogenase YP_001249067.1 1737280 D 357244 CDS YP_001249068.1 148284978 5218181 complement(1738458..1739399) 1 NC_009488.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1739399 cyoB 5218181 cyoB Orientia tsutsugamushi str. Boryong protoheme IX farnesyltransferase YP_001249068.1 1738458 R 357244 CDS YP_001249069.1 148284979 5218182 complement(1739411..1740997) 1 NC_009488.1 cytochrome c oxidase polypeptide I 1740997 coxA 5218182 coxA Orientia tsutsugamushi str. Boryong cytochrome c oxidase polypeptide I YP_001249069.1 1739411 R 357244 CDS YP_001249070.1 148284980 5218183 complement(1741189..1742610) 1 NC_009488.1 hypothetical protein 1742610 5218183 OTBS_1801 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249070.1 1741189 R 357244 CDS YP_001249071.1 148284981 5218184 1742936..1743559 1 NC_009488.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1743559 rplY 5218184 rplY Orientia tsutsugamushi str. Boryong 50S ribosomal protein L25 YP_001249071.1 1742936 D 357244 CDS YP_001249072.1 148284982 5218185 1743559..1744119 1 NC_009488.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1744119 pth 5218185 pth Orientia tsutsugamushi str. Boryong peptidyl-tRNA hydrolase YP_001249072.1 1743559 D 357244 CDS YP_001249073.1 148284983 5218186 1744129..1745229 1 NC_009488.1 GTP-binding protein 1745229 ychF 5218186 ychF Orientia tsutsugamushi str. Boryong GTP-binding protein YP_001249073.1 1744129 D 357244 CDS YP_001249074.1 148284984 5218187 complement(1745277..1745438) 1 NC_009488.1 hypothetical protein 1745438 5218187 OTBS_1805 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249074.1 1745277 R 357244 CDS YP_001249075.1 148284985 5218189 1746339..1747160 1 NC_009488.1 exodeoxyribonuclease III 1747160 xth1 5218189 xth1 Orientia tsutsugamushi str. Boryong exodeoxyribonuclease III YP_001249075.1 1746339 D 357244 CDS YP_001249076.1 148284986 5218193 1748208..1748513 1 NC_009488.1 ompA-like autotransporter 1748513 rhp6 5218193 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001249076.1 1748208 D 357244 CDS YP_001249077.1 148284987 5218197 complement(1750797..1751309) 1 NC_009488.1 hypothetical protein 1751309 5218197 OTBS_1815 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249077.1 1750797 R 357244 CDS YP_001249078.1 148284988 5218199 complement(1752135..1752683) 1 NC_009488.1 cytochrome c 1752683 cycC 5218199 cycC Orientia tsutsugamushi str. Boryong cytochrome c YP_001249078.1 1752135 R 357244 CDS YP_001249079.1 148284989 5218200 1752932..1753882 1 NC_009488.1 membrane protease, stomatin/prohibitin-like protein 1753882 hflC 5218200 hflC Orientia tsutsugamushi str. Boryong membrane protease, stomatin/prohibitin-like protein YP_001249079.1 1752932 D 357244 CDS YP_001249080.1 148284990 5218205 complement(1758699..1758833) 1 NC_009488.1 ankyrin repeat-containing protein 1758833 ank1C13 5218205 ank1C13 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249080.1 1758699 R 357244 CDS YP_001249081.1 148284991 5218206 complement(1758969..1759976) 1 NC_009488.1 tryptophanyl-tRNA synthetase 1759976 trpS 5218206 trpS Orientia tsutsugamushi str. Boryong tryptophanyl-tRNA synthetase YP_001249081.1 1758969 R 357244 CDS YP_001249082.1 148284992 5218212 complement(1763312..1763458) 1 NC_009488.1 hypothetical protein 1763458 rhp7 5218212 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249082.1 1763312 R 357244 CDS YP_001249083.1 148284993 5218214 complement(1763576..1763815) 1 NC_009488.1 hypothetical protein 1763815 5218214 OTBS_1832 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249083.1 1763576 R 357244 CDS YP_001249084.1 148284994 5218216 complement(1766603..1767616) 1 NC_009488.1 ATP-binding protein 1767616 mrp 5218216 mrp Orientia tsutsugamushi str. Boryong ATP-binding protein YP_001249084.1 1766603 R 357244 CDS YP_001249085.1 148284995 5218217 1767800..1768849 1 NC_009488.1 membrane bound protease 1768849 hflK 5218217 hflK Orientia tsutsugamushi str. Boryong membrane bound protease YP_001249085.1 1767800 D 357244 CDS YP_001249086.1 148284996 5218218 1768873..1769739 1 NC_009488.1 membrane protease, stomatin/prohibitin-like protein 1769739 hflC 5218218 hflC Orientia tsutsugamushi str. Boryong membrane protease, stomatin/prohibitin-like protein YP_001249086.1 1768873 D 357244 CDS YP_001249087.1 148284997 5218219 1769757..1771157 1 NC_009488.1 periplasmic serine protease 1771157 htrA 5218219 htrA Orientia tsutsugamushi str. Boryong periplasmic serine protease YP_001249087.1 1769757 D 357244 CDS YP_001249088.1 148284998 5218220 complement(1771211..1771390) 1 NC_009488.1 hypothetical protein 1771390 5218220 OTBS_1838 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249088.1 1771211 R 357244 CDS YP_001249089.1 148284999 5218221 1771365..1771973 1 NC_009488.1 peptidoglycan-associated lipoprotein precursor 1771973 pal 5218221 pal Orientia tsutsugamushi str. Boryong peptidoglycan-associated lipoprotein precursor YP_001249089.1 1771365 D 357244 CDS YP_001249090.1 148285000 5218222 complement(1772228..1775020) 1 NC_009488.1 hypothetical protein 1775020 5218222 OTBS_1840 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249090.1 1772228 R 357244 CDS YP_001249091.1 148285001 5218223 1775219..1776235 1 NC_009488.1 thioredoxin reductase 1776235 trxB2 5218223 trxB2 Orientia tsutsugamushi str. Boryong thioredoxin reductase YP_001249091.1 1775219 D 357244 CDS YP_001249092.1 148285002 5218224 1776232..1777137 1 NC_009488.1 methylenetetrahydrofolate dehydrogenase 1777137 folD 5218224 folD Orientia tsutsugamushi str. Boryong methylenetetrahydrofolate dehydrogenase YP_001249092.1 1776232 D 357244 CDS YP_001249093.1 148285003 5218225 complement(1777072..1778457) 1 NC_009488.1 hypothetical protein 1778457 5218225 OTBS_1843 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249093.1 1777072 R 357244 CDS YP_001249094.1 148285004 5218226 complement(1778457..1780823) 1 NC_009488.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1780823 topA 5218226 topA Orientia tsutsugamushi str. Boryong DNA topoisomerase I YP_001249094.1 1778457 R 357244 CDS YP_001249095.1 148285005 5218227 complement(1780916..1781872) 1 NC_009488.1 malate dehydrogenase 1781872 mdh 5218227 mdh Orientia tsutsugamushi str. Boryong malate dehydrogenase YP_001249095.1 1780916 R 357244 CDS YP_001249096.1 148285006 5218228 complement(1782100..1782594) 1 NC_009488.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1782594 rimM 5218228 rimM Orientia tsutsugamushi str. Boryong 16S rRNA-processing protein RimM YP_001249096.1 1782100 R 357244 CDS YP_001249097.1 148285007 5218229 1782763..1785294 1 NC_009488.1 hypothetical protein 1785294 5218229 OTBS_1847 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249097.1 1782763 D 357244 CDS YP_001249098.1 148285008 5218230 complement(1785594..1786517) 1 NC_009488.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1786517 fmt 5218230 fmt Orientia tsutsugamushi str. Boryong methionyl-tRNA formyltransferase YP_001249098.1 1785594 R 357244 CDS YP_001249099.1 148285009 5218231 complement(1786514..1787059) 1 NC_009488.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1787059 def 5218231 def Orientia tsutsugamushi str. Boryong peptide deformylase YP_001249099.1 1786514 R 357244 CDS YP_001249100.1 148285010 5218236 1790877..1791263 1 NC_009488.1 ompA-like autotransporter 1791263 rhp6 5218236 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001249100.1 1790877 D 357244 CDS YP_001249101.1 148285011 5218238 1792550..1792804 1 NC_009488.1 hypothetical protein 1792804 5218238 OTBS_1856 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249101.1 1792550 D 357244 CDS YP_001249102.1 148285012 5218244 complement(1801776..1802201) 1 NC_009488.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1802201 ndk 5218244 ndk Orientia tsutsugamushi str. Boryong nucleoside diphosphate kinase YP_001249102.1 1801776 R 357244 CDS YP_001249103.1 148285013 5218250 1807058..1807393 1 NC_009488.1 hypothetical protein 1807393 tchA 5218250 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249103.1 1807058 D 357244 CDS YP_001249104.1 148285014 5218252 1807941..1808342 1 NC_009488.1 hypothetical protein 1808342 tchB 5218252 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249104.1 1807941 D 357244 CDS YP_001249105.1 148285015 5218253 1808454..1808918 1 NC_009488.1 conjugative pilus assembly protein 1808918 traB 5218253 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001249105.1 1808454 D 357244 CDS YP_001249106.1 148285016 5218254 1808918..1809208 1 NC_009488.1 conjugative transfer protein 1809208 traV 5218254 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249106.1 1808918 D 357244 CDS YP_001249107.1 148285017 5218256 1810165..1810485 1 NC_009488.1 conjugative transfer protein 1810485 trbC 5218256 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249107.1 1810165 D 357244 CDS YP_001249108.1 148285018 5218258 1812179..1812883 1 NC_009488.1 conjugative pilus assembly protein 1812883 traF 5218258 traF Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001249108.1 1812179 D 357244 CDS YP_001249109.1 148285019 5218263 complement(1815419..1816288) 1 NC_009488.1 hypothetical protein 1816288 5218263 OTBS_1880 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249109.1 1815419 R 357244 CDS YP_001249110.1 148285020 5218266 complement(1818942..1820021) 1 NC_009488.1 cytochrome c oxidase assembly protein 1820021 coxW 5218266 coxW Orientia tsutsugamushi str. Boryong cytochrome c oxidase assembly protein YP_001249110.1 1818942 R 357244 CDS YP_001249111.1 148285021 5218270 1822931..1823326 1 NC_009488.1 hypothetical protein 1823326 5218270 OTBS_1887 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249111.1 1822931 D 357244 CDS YP_001249112.1 148285022 5218274 complement(1823967..1825148) 1 NC_009488.1 Bcr/CflA subfamily drug resistance transporter 1825148 bcr 5218274 bcr Orientia tsutsugamushi str. Boryong Bcr/CflA subfamily drug resistance transporter YP_001249112.1 1823967 R 357244 CDS YP_001249113.1 148285023 5218275 1826352..1826552 1 NC_009488.1 hypothetical protein 1826552 rhp7 5218275 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249113.1 1826352 D 357244 CDS YP_001249114.1 148285024 5218276 1826677..1827921 1 NC_009488.1 phage-related integrase 1827921 int 5218276 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001249114.1 1826677 D 357244 CDS YP_001249115.1 148285025 5218277 1828047..1828382 1 NC_009488.1 hypothetical protein 1828382 tchA 5218277 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249115.1 1828047 D 357244 CDS YP_001249116.1 148285026 5218278 1828382..1828933 1 NC_009488.1 conjugative transfer protein 1828933 traE 5218278 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249116.1 1828382 D 357244 CDS YP_001249117.1 148285027 5218279 1828930..1829406 1 NC_009488.1 hypothetical protein 1829406 tchB 5218279 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249117.1 1828930 D 357244 CDS YP_001249118.1 148285028 5218286 1832307..1832474 1 NC_009488.1 conjugative transfer protein 1832474 traV 5218286 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249118.1 1832307 D 357244 CDS YP_001249119.1 148285029 5218287 complement(1832433..1832768) 1 NC_009488.1 hypothetical protein 1832768 tchA 5218287 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249119.1 1832433 R 357244 CDS YP_001249120.1 148285030 5218292 complement(1836545..1837333) 1 NC_009488.1 Zinc/manganese ABC transporter permease 1837333 znuB 5218292 znuB Orientia tsutsugamushi str. Boryong Zinc/manganese ABC transporter permease YP_001249120.1 1836545 R 357244 CDS YP_001249121.1 148285031 5218293 complement(1837314..1838027) 1 NC_009488.1 Zinc ABC transporter ATP-binding protein 1838027 znuC 5218293 znuC Orientia tsutsugamushi str. Boryong Zinc ABC transporter ATP-binding protein YP_001249121.1 1837314 R 357244 CDS YP_001249122.1 148285032 5218294 complement(1838295..1838855) 1 NC_009488.1 hypothetical protein 1838855 5218294 OTBS_1911 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249122.1 1838295 R 357244 CDS YP_001249123.1 148285033 5218295 complement(1838867..1840546) 1 NC_009488.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1840546 dnaX 5218295 dnaX Orientia tsutsugamushi str. Boryong DNA polymerase III subunits gamma and tau YP_001249123.1 1838867 R 357244 CDS YP_001249124.1 148285034 5218296 1841601..1844597 1 NC_009488.1 ompA-like, autotransporter 1844597 rhp8 5218296 rhp8 Orientia tsutsugamushi str. Boryong ompA-like, autotransporter YP_001249124.1 1841601 D 357244 CDS YP_001249125.1 148285035 5218297 complement(1844689..1846164) 1 NC_009488.1 hypothetical protein 1846164 5218297 OTBS_1914 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249125.1 1844689 R 357244 CDS YP_001249126.1 148285036 5218298 complement(1846222..1847592) 1 NC_009488.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1847592 xseA 5218298 xseA Orientia tsutsugamushi str. Boryong exodeoxyribonuclease VII large subunit YP_001249126.1 1846222 R 357244 CDS YP_001249127.1 148285037 5218299 complement(1847828..1848577) 1 NC_009488.1 hypothetical protein 1848577 5218299 OTBS_1916 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249127.1 1847828 R 357244 CDS YP_001249128.1 148285038 5218300 1848681..1849349 1 NC_009488.1 hypothetical protein 1849349 5218300 OTBS_1917 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249128.1 1848681 D 357244 CDS YP_001249129.1 148285039 5218301 1849417..1849812 1 NC_009488.1 50S ribosomal protein L21 1849812 rplU 5218301 rplU Orientia tsutsugamushi str. Boryong 50S ribosomal protein L21 YP_001249129.1 1849417 D 357244 CDS YP_001249130.1 148285040 5218302 1849856..1850125 1 NC_009488.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1850125 rpmA 5218302 rpmA Orientia tsutsugamushi str. Boryong 50S ribosomal protein L27 YP_001249130.1 1849856 D 357244 CDS YP_001249131.1 148285041 5218304 1851664..1851762 1 NC_009488.1 hypothetical protein 1851762 5218304 OTBS_1921 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249131.1 1851664 D 357244 CDS YP_001249132.1 148285042 5218313 complement(1857453..1858001) 1 NC_009488.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1858001 pgsA 5218313 pgsA Orientia tsutsugamushi str. Boryong CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001249132.1 1857453 R 357244 CDS YP_001249133.1 148285043 5218976 1862942..1863517 1 NC_009488.1 spoT-like ppGpp hydrolase 1863517 spoT43 5218976 spoT43 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001249133.1 1862942 D 357244 CDS YP_001249134.1 148285044 5218983 complement(1868400..1869065) 1 NC_009488.1 rare lipoprotein A precursor 1869065 rlpA 5218983 rlpA Orientia tsutsugamushi str. Boryong rare lipoprotein A precursor YP_001249134.1 1868400 R 357244 CDS YP_001249135.1 148285045 5218985 1870097..1870963 1 NC_009488.1 mechanosensitive ion channel MscS 1870963 5218985 OTBS_1945 Orientia tsutsugamushi str. Boryong mechanosensitive ion channel MscS YP_001249135.1 1870097 D 357244 CDS YP_001249136.1 148285046 5218986 complement(1871912..1872700) 1 NC_009488.1 hypothetical protein 1872700 5218986 OTBS_1946 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249136.1 1871912 R 357244 CDS YP_001249137.1 148285047 5218987 complement(1872713..1874248) 1 NC_009488.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1874248 metG 5218987 metG Orientia tsutsugamushi str. Boryong methionyl-tRNA synthetase YP_001249137.1 1872713 R 357244 CDS YP_001249138.1 148285048 5218988 1874433..1876373 1 NC_009488.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1876373 priA 5218988 priA Orientia tsutsugamushi str. Boryong primosome assembly protein PriA YP_001249138.1 1874433 D 357244 CDS YP_001249139.1 148285049 5218989 1876748..1877035 1 NC_009488.1 type IV secretion system protein VirB3 1877035 virB3 5218989 virB3 Orientia tsutsugamushi str. Boryong type IV secretion system protein VirB3 YP_001249139.1 1876748 D 357244 CDS YP_001249140.1 148285050 5218990 1877046..1879463 1 NC_009488.1 type IV secretion system ATPase VirB4 1879463 virB4 5218990 virB4 Orientia tsutsugamushi str. Boryong type IV secretion system ATPase VirB4 YP_001249140.1 1877046 D 357244 CDS YP_001249141.1 148285051 5218991 1879463..1881910 1 NC_009488.1 type IV secretion system protein 1881910 virB6-1 5218991 virB6-1 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001249141.1 1879463 D 357244 CDS YP_001249142.1 148285052 5218992 1881932..1885804 1 NC_009488.1 type IV secretion system protein 1885804 virB6-2 5218992 virB6-2 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001249142.1 1881932 D 357244 CDS YP_001249143.1 148285053 5218993 1885858..1889133 1 NC_009488.1 type IV secretion system protein 1889133 virB6-3 5218993 virB6-3 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001249143.1 1885858 D 357244 CDS YP_001249144.1 148285054 5218994 1889126..1891693 1 NC_009488.1 type IV secretion system protein 1891693 virB6-4 5218994 virB6-4 Orientia tsutsugamushi str. Boryong type IV secretion system protein YP_001249144.1 1889126 D 357244 CDS YP_001249145.1 148285055 5218995 1891730..1892983 1 NC_009488.1 proline/betaine transporter 1892983 proP 5218995 proP Orientia tsutsugamushi str. Boryong proline/betaine transporter YP_001249145.1 1891730 D 357244 CDS YP_001249146.1 148285056 5218996 1893012..1895054 1 NC_009488.1 DNA mismatch repair protein 1895054 mutL 5218996 mutL Orientia tsutsugamushi str. Boryong DNA mismatch repair protein YP_001249146.1 1893012 D 357244 CDS YP_001249147.1 148285057 5218997 1895180..1896580 1 NC_009488.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1896580 gltX 5218997 gltX Orientia tsutsugamushi str. Boryong glutamyl-tRNA synthetase YP_001249147.1 1895180 D 357244 CDS YP_001249148.1 148285058 5218998 1896645..1898081 1 NC_009488.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1898081 cysS 5218998 cysS Orientia tsutsugamushi str. Boryong cysteinyl-tRNA synthetase YP_001249148.1 1896645 D 357244 CDS YP_001249149.1 148285059 5219001 complement(1899064..1901214) 1 NC_009488.1 DNA helicase II, CAI27690 1901214 uvrD 5219001 uvrD Orientia tsutsugamushi str. Boryong DNA helicase II, CAI27690 YP_001249149.1 1899064 R 357244 CDS YP_001249150.1 148285060 5219007 complement(1903969..1904559) 1 NC_009488.1 hypothetical protein 1904559 5219007 OTBS_1967 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249150.1 1903969 R 357244 CDS YP_001249151.1 148285061 5219008 1904877..1905035 1 NC_009488.1 hypothetical protein 1905035 5219008 OTBS_1968 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249151.1 1904877 D 357244 CDS YP_001249152.1 148285062 5219011 1906400..1906645 1 NC_009488.1 hypothetical protein 1906645 5219011 OTBS_1971 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249152.1 1906400 D 357244 CDS YP_001249153.1 148285063 5219012 1906681..1906893 1 NC_009488.1 hypothetical protein 1906893 5219012 OTBS_1972 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249153.1 1906681 D 357244 CDS YP_001249154.1 148285064 5219014 complement(1907579..1908148) 1 NC_009488.1 spoT-like ppGpp hydrolase 1908148 spoT44 5219014 spoT44 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001249154.1 1907579 R 357244 CDS YP_001249155.1 148285065 5219015 complement(1908249..1909106) 1 NC_009488.1 signal transduction histidine kinase 1909106 hkp38 5219015 hkp38 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249155.1 1908249 R 357244 CDS YP_001249156.1 148285066 5219016 complement(1909114..1909857) 1 NC_009488.1 signal transduction histidine kinase 1909857 hkp39 5219016 hkp39 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249156.1 1909114 R 357244 CDS YP_001249157.1 148285067 5219017 complement(1910209..1910925) 1 NC_009488.1 hypothetical protein 1910925 rhp5 5219017 rhp5 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249157.1 1910209 R 357244 CDS YP_001249158.1 148285068 5219018 1911401..1912207 1 NC_009488.1 site-specific DNA adenine methylase 1912207 dam30 5219018 dam30 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001249158.1 1911401 D 357244 CDS YP_001249159.1 148285069 5219019 complement(1912235..1912777) 1 NC_009488.1 ompA-like autotransporter 1912777 rhp6 5219019 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001249159.1 1912235 R 357244 CDS YP_001249160.1 148285070 5219020 complement(1912797..1913741) 1 NC_009488.1 ankyrin repeat-containing protein 1913741 ank1C14 5219020 ank1C14 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249160.1 1912797 R 357244 CDS YP_001249161.1 148285071 5219022 complement(1915182..1915391) 1 NC_009488.1 ompA-like autotransporter 1915391 rhp6 5219022 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001249161.1 1915182 R 357244 CDS YP_001249162.1 148285072 5219024 1916159..1916959 1 NC_009488.1 hypothetical protein 1916959 5219024 OTBS_1984 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249162.1 1916159 D 357244 CDS YP_001249163.1 148285073 5219028 1918372..1918572 1 NC_009488.1 hypothetical protein 1918572 rhp7 5219028 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249163.1 1918372 D 357244 CDS YP_001249164.1 148285074 5219029 1918697..1919941 1 NC_009488.1 phage-related integrase 1919941 int 5219029 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001249164.1 1918697 D 357244 CDS YP_001249165.1 148285075 5219030 1920067..1920402 1 NC_009488.1 hypothetical protein 1920402 tchA 5219030 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249165.1 1920067 D 357244 CDS YP_001249166.1 148285076 5219031 1920402..1920953 1 NC_009488.1 conjugative transfer protein 1920953 traE 5219031 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249166.1 1920402 D 357244 CDS YP_001249167.1 148285077 5219032 1920950..1921351 1 NC_009488.1 hypothetical protein 1921351 tchB 5219032 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249167.1 1920950 D 357244 CDS YP_001249168.1 148285078 5219033 1921463..1921927 1 NC_009488.1 conjugative pilus assembly protein 1921927 traB 5219033 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001249168.1 1921463 D 357244 CDS YP_001249169.1 148285079 5219034 1921927..1922217 1 NC_009488.1 conjugative transfer protein 1922217 traV 5219034 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249169.1 1921927 D 357244 CDS YP_001249170.1 148285080 5219036 1923174..1923494 1 NC_009488.1 conjugative transfer protein 1923494 trbC 5219036 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249170.1 1923174 D 357244 CDS YP_001249171.1 148285081 5219042 1931709..1932848 1 NC_009488.1 hypothetical protein 1932848 tpr1B18 5219042 tpr1B18 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249171.1 1931709 D 357244 CDS YP_001249172.1 148285082 5219044 complement(1934611..1935654) 1 NC_009488.1 transposase and inactivated derivative 1935654 tnE 5219044 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001249172.1 1934611 R 357244 CDS YP_001249173.1 148285083 5219046 1940183..1940383 1 NC_009488.1 hypothetical protein 1940383 5219046 OTBS_2006 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249173.1 1940183 D 357244 CDS YP_001249174.1 148285084 5219047 1940385..1940840 1 NC_009488.1 conjugative transfer protein 1940840 traD_Ti 5219047 traD_Ti Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249174.1 1940385 D 357244 CDS YP_001249175.1 148285085 5219048 1940928..1941467 1 NC_009488.1 hypothetical protein 1941467 rhp4 5219048 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249175.1 1940928 D 357244 CDS YP_001249176.1 148285086 5219049 complement(1941504..1942079) 1 NC_009488.1 spoT-like ppGpp hydrolase 1942079 spoT45 5219049 spoT45 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001249176.1 1941504 R 357244 CDS YP_001249177.1 148285087 5219050 complement(1942180..1943037) 1 NC_009488.1 signal transduction histidine kinase 1943037 hkp40 5219050 hkp40 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249177.1 1942180 R 357244 CDS YP_001249178.1 148285088 5219051 complement(1943045..1943788) 1 NC_009488.1 signal transduction histidine kinase 1943788 hkp41 5219051 hkp41 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249178.1 1943045 R 357244 CDS YP_001249179.1 148285089 5219052 1945118..1947091 1 NC_009488.1 ankyrin repeat-containing protein 1947091 ank2A11 5219052 ank2A11 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249179.1 1945118 D 357244 CDS YP_001249180.1 148285090 5219053 1947706..1948518 1 NC_009488.1 site-specific DNA adenine methylase 1948518 dam31 5219053 dam31 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001249180.1 1947706 D 357244 CDS YP_001249181.1 148285091 5219054 complement(1948714..1949814) 1 NC_009488.1 hypothetical protein 1949814 5219054 OTBS_2014 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249181.1 1948714 R 357244 CDS YP_001249182.1 148285092 5219055 complement(1950244..1951938) 1 NC_009488.1 hypothetical protein 1951938 tchD 5219055 tchD Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249182.1 1950244 R 357244 CDS YP_001249183.1 148285093 5219060 complement(1954810..1955226) 1 NC_009488.1 hypothetical protein 1955226 rhp9 5219060 rhp9 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249183.1 1954810 R 357244 CDS YP_001249184.1 148285094 5219061 1955679..1955879 1 NC_009488.1 hypothetical protein 1955879 rhp7 5219061 rhp7 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249184.1 1955679 D 357244 CDS YP_001249185.1 148285095 5219062 1956004..1957248 1 NC_009488.1 phage-related integrase 1957248 int 5219062 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001249185.1 1956004 D 357244 CDS YP_001249186.1 148285096 5219063 1957374..1957709 1 NC_009488.1 hypothetical protein 1957709 tchA 5219063 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249186.1 1957374 D 357244 CDS YP_001249187.1 148285097 5219064 1957709..1958260 1 NC_009488.1 conjugative transfer protein 1958260 traE 5219064 traE Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249187.1 1957709 D 357244 CDS YP_001249188.1 148285098 5219065 1958257..1958658 1 NC_009488.1 hypothetical protein 1958658 tchB 5219065 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249188.1 1958257 D 357244 CDS YP_001249189.1 148285099 5219066 1958770..1959234 1 NC_009488.1 conjugative pilus assembly protein 1959234 traB 5219066 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001249189.1 1958770 D 357244 CDS YP_001249190.1 148285100 5219067 1959234..1959524 1 NC_009488.1 conjugative transfer protein 1959524 traV 5219067 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249190.1 1959234 D 357244 CDS YP_001249191.1 148285101 5219069 1960481..1960801 1 NC_009488.1 conjugative transfer protein 1960801 trbC 5219069 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249191.1 1960481 D 357244 CDS YP_001249192.1 148285102 5219074 1964810..1965070 1 NC_009488.1 conjugative transfer protein 1965070 traD_F 5219074 traD_F Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249192.1 1964810 D 357244 CDS YP_001249193.1 148285103 5219079 1968918..1969451 1 NC_009488.1 hypothetical protein 1969451 rhp4 5219079 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249193.1 1968918 D 357244 CDS YP_001249194.1 148285104 5219083 complement(1974504..1975013) 1 NC_009488.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1975013 lspA 5219083 lspA Orientia tsutsugamushi str. Boryong lipoprotein signal peptidase YP_001249194.1 1974504 R 357244 CDS YP_001249195.1 148285105 5219085 1975308..1976102 1 NC_009488.1 hypothetical protein 1976102 tpr1B19 5219085 tpr1B19 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249195.1 1975308 D 357244 CDS YP_001249196.1 148285106 5219086 1976736..1976954 1 NC_009488.1 hypothetical protein 1976954 5219086 OTBS_2045 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249196.1 1976736 D 357244 CDS YP_001249197.1 148285107 5219090 1980585..1981088 1 NC_009488.1 ompA-like autotransporter 1981088 rhp6 5219090 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001249197.1 1980585 D 357244 CDS YP_001249198.1 148285108 5219092 1982496..1983443 1 NC_009488.1 ankyrin repeat-containing protein 1983443 ank2A12 5219092 ank2A12 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249198.1 1982496 D 357244 CDS YP_001249199.1 148285109 5219093 1983421..1984470 1 NC_009488.1 hypothetical protein 1984470 5219093 OTBS_2052 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249199.1 1983421 D 357244 CDS YP_001249200.1 148285110 5219094 1985015..1985842 1 NC_009488.1 signal transduction histidine kinase 1985842 hkp42 5219094 hkp42 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249200.1 1985015 D 357244 CDS YP_001249201.1 148285111 5219096 1986739..1987332 1 NC_009488.1 spoT-like ppGpp hydrolase 1987332 spoT47 5219096 spoT47 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001249201.1 1986739 D 357244 CDS YP_001249202.1 148285112 5219097 complement(1987400..1987945) 1 NC_009488.1 hypothetical protein 1987945 rhp4 5219097 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249202.1 1987400 R 357244 CDS YP_001249203.1 148285113 5219099 complement(1989315..1991051) 1 NC_009488.1 hypothetical protein 1991051 5219099 OTBS_2058 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249203.1 1989315 R 357244 CDS YP_001249204.1 148285114 5219101 complement(1992371..1992571) 1 NC_009488.1 hypothetical protein 1992571 5219101 OTBS_2060 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249204.1 1992371 R 357244 CDS YP_001249205.1 148285115 5219103 1997164..1998075 1 NC_009488.1 transposase and inactivated derivative 1998075 tnE 5219103 tnE Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001249205.1 1997164 D 357244 CDS YP_001249206.1 148285116 5219105 complement(1999832..2000494) 1 NC_009488.1 hypothetical protein 2000494 tpr1B20 5219105 tpr1B20 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249206.1 1999832 R 357244 CDS YP_001249207.1 148285117 5219109 complement(2004467..2006128) 1 NC_009488.1 conjugative transfer protein 2006128 traN 5219109 traN Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249207.1 2004467 R 357244 CDS YP_001249208.1 148285118 5219110 complement(2006151..2006471) 1 NC_009488.1 conjugative transfer protein 2006471 trbC 5219110 trbC Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249208.1 2006151 R 357244 CDS YP_001249209.1 148285119 5219112 complement(2007549..2007737) 1 NC_009488.1 hypothetical protein 2007737 tchE 5219112 tchE Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249209.1 2007549 R 357244 CDS YP_001249210.1 148285120 5219113 complement(2007820..2008479) 1 NC_009488.1 conjugative transfer protein 2008479 traW 5219113 traW Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249210.1 2007820 R 357244 CDS YP_001249211.1 148285121 5219115 complement(2010947..2011276) 1 NC_009488.1 conjugative transfer protein 2011276 traV 5219115 traV Orientia tsutsugamushi str. Boryong conjugative transfer protein YP_001249211.1 2010947 R 357244 CDS YP_001249212.1 148285122 5219116 complement(2011276..2012607) 1 NC_009488.1 conjugative pilus assembly protein 2012607 traB 5219116 traB Orientia tsutsugamushi str. Boryong conjugative pilus assembly protein YP_001249212.1 2011276 R 357244 CDS YP_001249213.1 148285123 5219117 complement(2012661..2012993) 1 NC_009488.1 hypothetical protein 2012993 tchC 5219117 tchC Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249213.1 2012661 R 357244 CDS YP_001249214.1 148285124 5219118 complement(2013137..2013613) 1 NC_009488.1 hypothetical protein 2013613 tchB 5219118 tchB Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249214.1 2013137 R 357244 CDS YP_001249215.1 148285125 5219120 complement(2014161..2014496) 1 NC_009488.1 hypothetical protein 2014496 tchA 5219120 tchA Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249215.1 2014161 R 357244 CDS YP_001249216.1 148285126 5219121 complement(2014552..2015880) 1 NC_009488.1 phage-related integrase 2015880 int 5219121 int Orientia tsutsugamushi str. Boryong phage-related integrase YP_001249216.1 2014552 R 357244 CDS YP_001249217.1 148285127 5219126 2019298..2019873 1 NC_009488.1 spoT-like ppGpp hydrolase 2019873 spoT48 5219126 spoT48 Orientia tsutsugamushi str. Boryong spoT-like ppGpp hydrolase YP_001249217.1 2019298 D 357244 CDS YP_001249218.1 148285128 5219127 2020055..2020357 1 NC_009488.1 ankyrin repeat-containing protein 2020357 ank1C15 5219127 ank1C15 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249218.1 2020055 D 357244 CDS YP_001249219.1 148285129 5219128 2021024..2022367 1 NC_009488.1 hypothetical protein 2022367 5219128 OTBS_2087 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249219.1 2021024 D 357244 CDS YP_001249220.1 148285130 5219129 complement(2022980..2024089) 1 NC_009488.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2024089 mnmA 5219129 mnmA Orientia tsutsugamushi str. Boryong tRNA-specific 2-thiouridylase MnmA YP_001249220.1 2022980 R 357244 CDS YP_001249221.1 148285131 5219133 complement(2027273..2028235) 1 NC_009488.1 transposase and inactivated derivative 2028235 tnD 5219133 tnD Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001249221.1 2027273 R 357244 CDS YP_001249222.1 148285132 5219134 2028461..2028718 1 NC_009488.1 ankyrin repeat-containing protein 2028718 ank1C16 5219134 ank1C16 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249222.1 2028461 D 357244 CDS YP_001249223.1 148285133 5219135 complement(2029125..2029985) 1 NC_009488.1 hypothetical protein 2029985 5219135 OTBS_2094 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249223.1 2029125 R 357244 CDS YP_001249224.1 148285134 5219136 2030581..2030841 1 NC_009488.1 ompA-like autotransporter 2030841 rhp6 5219136 rhp6 Orientia tsutsugamushi str. Boryong ompA-like autotransporter YP_001249224.1 2030581 D 357244 CDS YP_001249225.1 148285135 5219138 complement(2031578..2031805) 1 NC_009488.1 hypothetical protein 2031805 5219138 OTBS_2097 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249225.1 2031578 R 357244 CDS YP_001249226.1 148285136 5219139 2032135..2032665 1 NC_009488.1 hypothetical protein 2032665 rhp4 5219139 rhp4 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249226.1 2032135 D 357244 CDS YP_001249227.1 148285137 5219140 complement(2032757..2032969) 1 NC_009488.1 site-specific DNA adenine methylase 2032969 dam34 5219140 dam34 Orientia tsutsugamushi str. Boryong site-specific DNA adenine methylase YP_001249227.1 2032757 R 357244 CDS YP_001249228.1 148285138 5219141 2033318..2034064 1 NC_009488.1 signal transduction histidine kinase 2034064 hkp44 5219141 hkp44 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249228.1 2033318 D 357244 CDS YP_001249229.1 148285139 5219142 2034069..2034926 1 NC_009488.1 signal transduction histidine kinase 2034926 hkp45 5219142 hkp45 Orientia tsutsugamushi str. Boryong signal transduction histidine kinase YP_001249229.1 2034069 D 357244 CDS YP_001249230.1 148285140 5219144 2036283..2037158 1 NC_009488.1 transposase and inactivated derivative 2037158 tnA 5219144 tnA Orientia tsutsugamushi str. Boryong transposase and inactivated derivative YP_001249230.1 2036283 D 357244 CDS YP_001249231.1 148285141 5219146 complement(2037634..2044533) 1 NC_009488.1 hypothetical protein 2044533 5219146 OTBS_2105 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249231.1 2037634 R 357244 CDS YP_001249232.1 148285142 5219147 complement(2044526..2045071) 1 NC_009488.1 hypothetical protein 2045071 5219147 OTBS_2106 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249232.1 2044526 R 357244 CDS YP_001249233.1 148285143 5219148 complement(2045634..2046953) 1 NC_009488.1 hypothetical protein 2046953 rhp2 5219148 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249233.1 2045634 R 357244 CDS YP_001249234.1 148285144 5219155 complement(2058242..2059027) 1 NC_009488.1 exodeoxyribonuclease III 2059027 xth1 5219155 xth1 Orientia tsutsugamushi str. Boryong exodeoxyribonuclease III YP_001249234.1 2058242 R 357244 CDS YP_001249235.1 148285145 5219157 complement(2059643..2059912) 1 NC_009488.1 hypothetical protein 2059912 rhp2 5219157 rhp2 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249235.1 2059643 R 357244 CDS YP_001249236.1 148285146 5219166 complement(2066336..2069986) 1 NC_009488.1 hypothetical protein 2069986 5219166 OTBS_2124 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249236.1 2066336 R 357244 CDS YP_001249237.1 148285147 5219168 complement(2070432..2072714) 1 NC_009488.1 ompA-like, autotransporter 2072714 rhp8 5219168 rhp8 Orientia tsutsugamushi str. Boryong ompA-like, autotransporter YP_001249237.1 2070432 R 357244 CDS YP_001249238.1 148285148 5219179 2078988..2080937 1 NC_009488.1 ompA-like, autotransporter 2080937 rhp8 5219179 rhp8 Orientia tsutsugamushi str. Boryong ompA-like, autotransporter YP_001249238.1 2078988 D 357244 CDS YP_001249239.1 148285149 5219185 2085200..2085334 1 NC_009488.1 hypothetical protein 2085334 5219185 OTBS_2143 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249239.1 2085200 D 357244 CDS YP_001249240.1 148285150 5219186 complement(2085577..2086515) 1 NC_009488.1 ribosomal large subunit pseudouridine synthase 2086515 rluC 5219186 rluC Orientia tsutsugamushi str. Boryong ribosomal large subunit pseudouridine synthase YP_001249240.1 2085577 R 357244 CDS YP_001249241.1 148285151 5219187 complement(2086499..2087371) 1 NC_009488.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 2087371 holB 5219187 holB Orientia tsutsugamushi str. Boryong DNA polymerase III subunit delta' YP_001249241.1 2086499 R 357244 CDS YP_001249242.1 148285152 5219188 complement(2087395..2087922) 1 NC_009488.1 inorganic pyrophosphatase 2087922 ppa 5219188 ppa Orientia tsutsugamushi str. Boryong inorganic pyrophosphatase YP_001249242.1 2087395 R 357244 CDS YP_001249243.1 148285153 5219189 complement(2088005..2088436) 1 NC_009488.1 DnaK suppressor-like protein 2088436 dksA 5219189 dksA Orientia tsutsugamushi str. Boryong DnaK suppressor-like protein YP_001249243.1 2088005 R 357244 CDS YP_001249244.1 148285154 5219190 complement(2088470..2089408) 1 NC_009488.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 2089408 xerC 5219190 xerC Orientia tsutsugamushi str. Boryong site-specific tyrosine recombinase XerC YP_001249244.1 2088470 R 357244 CDS YP_001249245.1 148285155 5219191 complement(2089434..2090777) 1 NC_009488.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2090777 trmE 5219191 trmE Orientia tsutsugamushi str. Boryong tRNA modification GTPase TrmE YP_001249245.1 2089434 R 357244 CDS YP_001249246.1 148285156 5219192 2090858..2095783 1 NC_009488.1 NAD-glutamate dehydrogenase 2095783 5219192 OTBS_2150 Orientia tsutsugamushi str. Boryong NAD-glutamate dehydrogenase YP_001249246.1 2090858 D 357244 CDS YP_001249247.1 148285157 5219197 complement(2099142..2099624) 1 NC_009488.1 protein-export protein 2099624 secB 5219197 secB Orientia tsutsugamushi str. Boryong protein-export protein YP_001249247.1 2099142 R 357244 CDS YP_001249248.1 148285158 5219198 complement(2099667..2100233) 1 NC_009488.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 2100233 dcd 5219198 dcd Orientia tsutsugamushi str. Boryong deoxycytidine triphosphate deaminase YP_001249248.1 2099667 R 357244 CDS YP_001249249.1 148285159 5219199 2100868..2102148 1 NC_009488.1 hypothetical protein 2102148 5219199 OTBS_2157 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249249.1 2100868 D 357244 CDS YP_001249250.1 148285160 5219200 complement(2102312..2102875) 1 NC_009488.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2102875 frr 5219200 frr Orientia tsutsugamushi str. Boryong ribosome recycling factor YP_001249250.1 2102312 R 357244 CDS YP_001249251.1 148285161 5219201 2103155..2105194 1 NC_009488.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2105194 nuoG 5219201 nuoG Orientia tsutsugamushi str. Boryong NADH dehydrogenase subunit G YP_001249251.1 2103155 D 357244 CDS YP_001249252.1 148285162 5219202 2105251..2106321 1 NC_009488.1 NADH dehydrogenase I chain H 2106321 nuoH 5219202 nuoH Orientia tsutsugamushi str. Boryong NADH dehydrogenase I chain H YP_001249252.1 2105251 D 357244 CDS YP_001249253.1 148285163 5219203 2106347..2106832 1 NC_009488.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2106832 nuoI 5219203 nuoI Orientia tsutsugamushi str. Boryong NADH dehydrogenase subunit I YP_001249253.1 2106347 D 357244 CDS YP_001249254.1 148285164 5219204 2106836..2107444 1 NC_009488.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2107444 nuoJ 5219204 nuoJ Orientia tsutsugamushi str. Boryong NADH dehydrogenase subunit J YP_001249254.1 2106836 D 357244 CDS YP_001249255.1 148285165 5219205 2107428..2107751 1 NC_009488.1 NADH dehydrogenase I chain K 2107751 nuoK 5219205 nuoK Orientia tsutsugamushi str. Boryong NADH dehydrogenase I chain K YP_001249255.1 2107428 D 357244 CDS YP_001249256.1 148285166 5219206 2107755..2109662 1 NC_009488.1 NADH dehydrogenase I chain L 2109662 nuoL 5219206 nuoL Orientia tsutsugamushi str. Boryong NADH dehydrogenase I chain L YP_001249256.1 2107755 D 357244 CDS YP_001249257.1 148285167 5219207 2109711..2111159 1 NC_009488.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2111159 nuoM 5219207 nuoM Orientia tsutsugamushi str. Boryong NADH dehydrogenase subunit M YP_001249257.1 2109711 D 357244 CDS YP_001249258.1 148285168 5219208 2111204..2112640 1 NC_009488.1 NADH dehydrogenase I chain N 2112640 nuoN 5219208 nuoN Orientia tsutsugamushi str. Boryong NADH dehydrogenase I chain N YP_001249258.1 2111204 D 357244 CDS YP_001249259.1 148285169 5219209 2112725..2114050 1 NC_009488.1 tRNA(Ile)-lysidine synthetase 2114050 tilS 5219209 tilS Orientia tsutsugamushi str. Boryong tRNA(Ile)-lysidine synthetase YP_001249259.1 2112725 D 357244 CDS YP_001249260.1 148285170 5219210 2114067..2115950 1 NC_009488.1 ATP-dependent metalloprotease 2115950 ftsH 5219210 ftsH Orientia tsutsugamushi str. Boryong ATP-dependent metalloprotease YP_001249260.1 2114067 D 357244 CDS YP_001249261.1 148285171 5219211 2115985..2116521 1 NC_009488.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 2116521 mpg 5219211 mpg Orientia tsutsugamushi str. Boryong 3-methyladenine DNA glycosylase YP_001249261.1 2115985 D 357244 CDS YP_001249262.1 148285172 5219212 2116537..2116959 1 NC_009488.1 hypothetical protein 2116959 5219212 OTBS_2170 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249262.1 2116537 D 357244 CDS YP_001249263.1 148285173 5219213 2117129..2118256 1 NC_009488.1 rod shape-determining protein rodA 2118256 rodA 5219213 rodA Orientia tsutsugamushi str. Boryong rod shape-determining protein rodA YP_001249263.1 2117129 D 357244 CDS YP_001249264.1 148285174 5219214 2118253..2118753 1 NC_009488.1 hypothetical protein 2118753 5219214 OTBS_2172 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249264.1 2118253 D 357244 CDS YP_001249265.1 148285175 5219215 2118743..2120491 1 NC_009488.1 penicillin-binding protein 2120491 pbpA1 5219215 pbpA1 Orientia tsutsugamushi str. Boryong penicillin-binding protein YP_001249265.1 2118743 D 357244 CDS YP_001249266.1 148285176 5219216 complement(2120648..2122150) 1 NC_009488.1 3-polyprenyl-4-hydroxybenzoate decarboxylase 2122150 ubiD 5219216 ubiD Orientia tsutsugamushi str. Boryong 3-polyprenyl-4-hydroxybenzoate decarboxylase YP_001249266.1 2120648 R 357244 CDS YP_001249267.1 148285177 5219217 2122474..2122896 1 NC_009488.1 hypothetical protein 2122896 5219217 OTBS_2175 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249267.1 2122474 D 357244 CDS YP_001249268.1 148285178 5219221 complement(2124560..2126086) 1 NC_009488.1 ankyrin repeat-containing protein 2126086 ank1u9 5219221 ank1u9 Orientia tsutsugamushi str. Boryong ankyrin repeat-containing protein YP_001249268.1 2124560 R 357244 CDS YP_001249269.1 148285179 5219222 complement(2126471..2126734) 1 NC_009488.1 hypothetical protein 2126734 5219222 OTBS_2179 Orientia tsutsugamushi str. Boryong hypothetical protein YP_001249269.1 2126471 R 357244 CDS