-- dump date 20140619_224439 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 357244000001 SEQ_END SEQ_END NC_009488.1 2127051 2127051 DR NC_009488.1; contig end 2127051..2127051 Orientia tsutsugamushi str. Boryong YP_001248088.1 CDS dnaA NC_009488.1 22 1431 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 22..1431 Orientia tsutsugamushi str. Boryong 5218319 YP_001248089.1 CDS dnaN NC_009488.1 1450 2748 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1450..2748 Orientia tsutsugamushi str. Boryong 5218320 YP_001248090.1 CDS virB8 NC_009488.1 2998 3678 D type IV secretion system protein 2998..3678 Orientia tsutsugamushi str. Boryong 5218321 YP_001248091.1 CDS virB9 NC_009488.1 3698 4099 D type IV secretion system protein 3698..4099 Orientia tsutsugamushi str. Boryong 5218322 YP_001248092.1 CDS virB10 NC_009488.1 4099 5628 D type IV secretion system protein 4099..5628 Orientia tsutsugamushi str. Boryong 5218323 YP_001248093.1 CDS virB11 NC_009488.1 5628 6617 D type IV secretion system ATPase VirB11 5628..6617 Orientia tsutsugamushi str. Boryong 5218324 YP_001248094.1 CDS virD4 NC_009488.1 6617 8389 D type IV secretion system component VirD4 6617..8389 Orientia tsutsugamushi str. Boryong 5218325 YP_001248095.1 CDS rhp2 NC_009488.1 10369 12168 D hypothetical protein 10369..12168 Orientia tsutsugamushi str. Boryong 5218327 YP_001248096.1 CDS OTBS_0012 NC_009488.1 16150 16326 R hypothetical protein complement(16150..16326) Orientia tsutsugamushi str. Boryong 5218330 YP_001248097.1 CDS trxB1 NC_009488.1 18683 19633 R thioredoxin reductase complement(18683..19633) Orientia tsutsugamushi str. Boryong 5218334 YP_001248098.1 CDS OTBS_0017 NC_009488.1 19769 20692 R hypothetical protein complement(19769..20692) Orientia tsutsugamushi str. Boryong 5218335 YP_001248099.1 CDS tolB NC_009488.1 20868 22229 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(20868..22229) Orientia tsutsugamushi str. Boryong 5218336 YP_001248100.1 CDS lpdA NC_009488.1 22560 23987 R dihydrolipoamide dehydrogenase complement(22560..23987) Orientia tsutsugamushi str. Boryong 5218337 YP_001248101.1 CDS OTBS_0020 NC_009488.1 24079 24882 R hypothetical protein complement(24079..24882) Orientia tsutsugamushi str. Boryong 5218338 YP_001248102.1 CDS OTBS_0021 NC_009488.1 25057 25662 D hypothetical protein 25057..25662 Orientia tsutsugamushi str. Boryong 5218339 YP_001248103.1 CDS tnD NC_009488.1 28785 29750 D transposase and inactivated derivative 28785..29750 Orientia tsutsugamushi str. Boryong 5218343 YP_001248104.1 CDS nrdA NC_009488.1 30179 31996 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 30179..31996 Orientia tsutsugamushi str. Boryong 5218344 YP_001248105.1 CDS nrdF NC_009488.1 32019 33008 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 32019..33008 Orientia tsutsugamushi str. Boryong 5218345 YP_001248106.1 CDS tchA NC_009488.1 38069 38404 D hypothetical protein 38069..38404 Orientia tsutsugamushi str. Boryong 5218350 YP_001248107.1 CDS tchB NC_009488.1 38952 39353 D hypothetical protein 38952..39353 Orientia tsutsugamushi str. Boryong 5218352 YP_001248108.1 CDS traB NC_009488.1 39465 39929 D conjugative pilus assembly protein 39465..39929 Orientia tsutsugamushi str. Boryong 5218353 YP_001248109.1 CDS traV NC_009488.1 39929 40219 D conjugative transfer protein 39929..40219 Orientia tsutsugamushi str. Boryong 5218354 YP_001248110.1 CDS tnE NC_009488.1 41506 42480 R transposase and inactivated derivative complement(41506..42480) Orientia tsutsugamushi str. Boryong 5218357 YP_001248111.1 CDS spoT1 NC_009488.1 42602 43207 R spoT-like ppGpp hydrolase complement(42602..43207) Orientia tsutsugamushi str. Boryong 5218358 YP_001248112.1 CDS rhp2 NC_009488.1 46763 48487 R hypothetical protein complement(46763..48487) Orientia tsutsugamushi str. Boryong 5218365 YP_001248113.1 CDS ybjR NC_009488.1 49164 50264 D N-acetylmuramoyl-L-alanine amidase 49164..50264 Orientia tsutsugamushi str. Boryong 5218366 YP_001248114.1 CDS ank2A1 NC_009488.1 51898 52512 D ankyrin repeat-containing protein 51898..52512 Orientia tsutsugamushi str. Boryong 5218369 YP_001248115.1 CDS OTBS_0057 NC_009488.1 55786 56679 D hypothetical protein 55786..56679 Orientia tsutsugamushi str. Boryong 5218375 YP_001248116.1 CDS tchA NC_009488.1 61808 62143 D hypothetical protein 61808..62143 Orientia tsutsugamushi str. Boryong 5218381 YP_001248117.1 CDS tchB NC_009488.1 62691 63092 D hypothetical protein 62691..63092 Orientia tsutsugamushi str. Boryong 5218383 YP_001248118.1 CDS traB NC_009488.1 63204 63668 D conjugative pilus assembly protein 63204..63668 Orientia tsutsugamushi str. Boryong 5218384 YP_001248119.1 CDS traV NC_009488.1 63668 63958 D conjugative transfer protein 63668..63958 Orientia tsutsugamushi str. Boryong 5218385 YP_001248120.1 CDS trbC NC_009488.1 64853 65236 D conjugative transfer protein 64853..65236 Orientia tsutsugamushi str. Boryong 5218387 YP_001248121.1 CDS ank1D1 NC_009488.1 67088 68359 D ankyrin repeat-containing protein 67088..68359 Orientia tsutsugamushi str. Boryong 5218389 YP_001248122.1 CDS tnE NC_009488.1 72912 73979 R transposase and inactivated derivative complement(72912..73979) Orientia tsutsugamushi str. Boryong 5218398 YP_001248123.1 CDS tnD NC_009488.1 74292 75254 D transposase and inactivated derivative 74292..75254 Orientia tsutsugamushi str. Boryong 5218400 YP_001248124.1 CDS ank1u1 NC_009488.1 76112 78367 D ankyrin repeat-containing protein 76112..78367 Orientia tsutsugamushi str. Boryong 5218402 YP_001248125.1 CDS traD_Ti NC_009488.1 83456 83854 D conjugative transfer protein 83456..83854 Orientia tsutsugamushi str. Boryong 5218405 YP_001248126.1 CDS rhp4 NC_009488.1 83942 84520 D hypothetical protein 83942..84520 Orientia tsutsugamushi str. Boryong 5218406 YP_001248127.1 CDS spoT2 NC_009488.1 84598 85173 R spoT-like ppGpp hydrolase complement(84598..85173) Orientia tsutsugamushi str. Boryong 5218407 YP_001248128.1 CDS hkp3 NC_009488.1 85307 86908 R signal transduction histidine kinase complement(85307..86908) Orientia tsutsugamushi str. Boryong 5218408 YP_001248129.1 CDS rhp5 NC_009488.1 87421 87972 R hypothetical protein complement(87421..87972) Orientia tsutsugamushi str. Boryong 5218409 YP_001248130.1 CDS rhp6 NC_009488.1 89265 89768 R ompA-like autotransporter complement(89265..89768) Orientia tsutsugamushi str. Boryong 5218411 YP_001248131.1 CDS tchD NC_009488.1 91751 93301 R hypothetical protein complement(91751..93301) Orientia tsutsugamushi str. Boryong 5218414 YP_001248132.1 CDS ank1C1 NC_009488.1 95039 95590 D ankyrin repeat-containing protein 95039..95590 Orientia tsutsugamushi str. Boryong 5218416 YP_001248133.1 CDS rhp8 NC_009488.1 99505 103890 R ompA-like, autotransporter complement(99505..103890) Orientia tsutsugamushi str. Boryong 5218420 YP_001248134.1 CDS tpr1B1 NC_009488.1 106687 106971 R hypothetical protein complement(106687..106971) Orientia tsutsugamushi str. Boryong 5218424 YP_001248135.1 CDS traN NC_009488.1 107369 107875 D conjugative transfer protein 107369..107875 Orientia tsutsugamushi str. Boryong 5218426 YP_001248136.1 CDS tpr1B2 NC_009488.1 111862 112524 D hypothetical protein 111862..112524 Orientia tsutsugamushi str. Boryong 5218430 YP_001248137.1 CDS traD_F NC_009488.1 112521 114278 D conjugative transfer protein 112521..114278 Orientia tsutsugamushi str. Boryong 5218431 YP_001248138.1 CDS dapD NC_009488.1 114517 115368 R 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase complement(114517..115368) Orientia tsutsugamushi str. Boryong 5218433 YP_001248139.1 CDS OTBS_0116 NC_009488.1 115467 116111 D hypothetical protein 115467..116111 Orientia tsutsugamushi str. Boryong 5218434 YP_001248140.1 CDS OTBS_0118 NC_009488.1 117750 117974 D hypothetical protein 117750..117974 Orientia tsutsugamushi str. Boryong 5218437 YP_001248141.1 CDS tnD NC_009488.1 118052 118648 R transposase and inactivated derivative complement(118052..118648) Orientia tsutsugamushi str. Boryong 5218438 YP_001248142.1 CDS OTBS_0120 NC_009488.1 118669 118842 R hypothetical protein complement(118669..118842) Orientia tsutsugamushi str. Boryong 5218439 YP_001248143.1 CDS tpr1A2 NC_009488.1 119171 119287 R hypothetical protein complement(119171..119287) Orientia tsutsugamushi str. Boryong 5218440 YP_001248144.1 CDS OTBS_0123 NC_009488.1 120181 121431 R hypothetical protein complement(120181..121431) Orientia tsutsugamushi str. Boryong 5218442 YP_001248145.1 CDS dam2 NC_009488.1 122333 122929 R site-specific DNA adenine methylase complement(122333..122929) Orientia tsutsugamushi str. Boryong 5218445 YP_001248146.1 CDS hkp5 NC_009488.1 123239 124120 D signal transduction histidine kinase 123239..124120 Orientia tsutsugamushi str. Boryong 5218447 YP_001248147.1 CDS OTBS_0135 NC_009488.1 130479 131486 D hypothetical protein 130479..131486 Orientia tsutsugamushi str. Boryong 5218454 YP_001248148.1 CDS OTBS_0137 NC_009488.1 132097 132699 D hypothetical protein 132097..132699 Orientia tsutsugamushi str. Boryong 5218456 YP_001248149.1 CDS OTBS_0138 NC_009488.1 132728 134185 R hypothetical protein complement(132728..134185) Orientia tsutsugamushi str. Boryong 5218457 YP_001248150.1 CDS OTBS_0139 NC_009488.1 134193 134357 D hypothetical protein 134193..134357 Orientia tsutsugamushi str. Boryong 5218458 YP_001248151.1 CDS tpiA NC_009488.1 134361 135110 D triosephosphate isomerase 134361..135110 Orientia tsutsugamushi str. Boryong 5218459 YP_001248152.1 CDS secG NC_009488.1 135116 135409 D preprotein translocase subunit SecG 135116..135409 Orientia tsutsugamushi str. Boryong 5218460 YP_001248153.1 CDS lysK NC_009488.1 135907 137487 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(135907..137487) Orientia tsutsugamushi str. Boryong 5218462 YP_001248154.1 CDS dsbB NC_009488.1 137639 138187 D disulfide bond formation protein 137639..138187 Orientia tsutsugamushi str. Boryong 5218463 YP_001248155.1 CDS coq7 NC_009488.1 138150 138695 D ubiquinone biosynthesis protein 138150..138695 Orientia tsutsugamushi str. Boryong 5218464 YP_001248156.1 CDS psd NC_009488.1 138771 139463 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 138771..139463 Orientia tsutsugamushi str. Boryong 5218465 YP_001248157.1 CDS pssA NC_009488.1 139512 140288 D CDP-diacylglycerol--serineO- phosphatidyltransferase 139512..140288 Orientia tsutsugamushi str. Boryong 5218466 YP_001248158.1 CDS mnhE NC_009488.1 140335 140820 D multisubunit Na+/H+ antiporter, MnhE subunit 140335..140820 Orientia tsutsugamushi str. Boryong 5218467 YP_001248159.1 CDS OTBS_0148 NC_009488.1 141101 143929 D hypothetical protein 141101..143929 Orientia tsutsugamushi str. Boryong 5218468 YP_001248160.1 CDS OTBS_0149 NC_009488.1 144106 145782 R hypothetical protein complement(144106..145782) Orientia tsutsugamushi str. Boryong 5218469 YP_001248161.1 CDS sucD NC_009488.1 145851 146729 R succinyl-CoA synthetase, alpha chain complement(145851..146729) Orientia tsutsugamushi str. Boryong 5218470 YP_001248162.1 CDS sucC NC_009488.1 146744 147904 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(146744..147904) Orientia tsutsugamushi str. Boryong 5218471 YP_001248163.1 CDS ubiH NC_009488.1 147961 149124 R 2-polyprenyl-6-methoxyphenol 4-hydroxylase complement(147961..149124) Orientia tsutsugamushi str. Boryong 5218472 YP_001248164.1 CDS OTBS_0153 NC_009488.1 149534 150118 R hypothetical protein complement(149534..150118) Orientia tsutsugamushi str. Boryong 5218474 YP_001248165.1 CDS ileS NC_009488.1 150260 153463 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(150260..153463) Orientia tsutsugamushi str. Boryong 5218475 YP_001248166.1 CDS OTBS_0155 NC_009488.1 153500 154117 R hypothetical protein complement(153500..154117) Orientia tsutsugamushi str. Boryong 5218476 YP_001248167.1 CDS rpsU NC_009488.1 154276 154482 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 154276..154482 Orientia tsutsugamushi str. Boryong 5218477 YP_001248168.1 CDS holC NC_009488.1 154511 154951 R DNA polymerase III chi subunit complement(154511..154951) Orientia tsutsugamushi str. Boryong 5218478 YP_001248169.1 CDS proP NC_009488.1 155109 156374 D proline/betaine transporter 155109..156374 Orientia tsutsugamushi str. Boryong 5218479 YP_001248170.1 CDS OTBS_0160 NC_009488.1 157235 157942 D hypothetical protein 157235..157942 Orientia tsutsugamushi str. Boryong 5218481 YP_001248171.1 CDS ank2A2 NC_009488.1 158021 159256 D ankyrin repeat-containing protein 158021..159256 Orientia tsutsugamushi str. Boryong 5218482 YP_001248172.1 CDS pnp NC_009488.1 159357 161579 R polynucleotide phosphorylase complement(159357..161579) Orientia tsutsugamushi str. Boryong 5218483 YP_001248173.1 CDS rpsO NC_009488.1 161898 162167 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(161898..162167) Orientia tsutsugamushi str. Boryong 5218484 YP_001248174.1 CDS truB NC_009488.1 162191 162958 R tRNA pseudouridine synthase B complement(162191..162958) Orientia tsutsugamushi str. Boryong 5218485 YP_001248175.1 CDS OTBS_0168 NC_009488.1 164424 164864 R transcriptional regulator complement(164424..164864) Orientia tsutsugamushi str. Boryong 5218489 YP_001248176.1 CDS OTBS_0170 NC_009488.1 165477 165764 R hypothetical protein complement(165477..165764) Orientia tsutsugamushi str. Boryong 5218491 YP_001248177.1 CDS traC NC_009488.1 167446 167715 R conjugative transfer protein complement(167446..167715) Orientia tsutsugamushi str. Boryong 5218495 YP_001248178.1 CDS tyrS NC_009488.1 171793 173034 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(171793..173034) Orientia tsutsugamushi str. Boryong 5218500 YP_001248179.1 CDS tchB NC_009488.1 174502 174816 D hypothetical protein 174502..174816 Orientia tsutsugamushi str. Boryong 5218502 YP_001248180.1 CDS traV NC_009488.1 174810 175049 D conjugative transfer protein 174810..175049 Orientia tsutsugamushi str. Boryong 5218503 YP_001248181.1 CDS sppA NC_009488.1 176307 177224 R periplasmic serine proteases (ClpP class) complement(176307..177224) Orientia tsutsugamushi str. Boryong 5218507 YP_001248182.1 CDS miaB NC_009488.1 177515 178864 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 177515..178864 Orientia tsutsugamushi str. Boryong 5218508 YP_001248183.1 CDS hemF NC_009488.1 179019 179864 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 179019..179864 Orientia tsutsugamushi str. Boryong 5218509 YP_001248184.1 CDS OTBS_0189 NC_009488.1 180005 180346 D hypothetical protein 180005..180346 Orientia tsutsugamushi str. Boryong 5218510 YP_001248185.1 CDS OTBS_0193 NC_009488.1 181605 181814 D hypothetical protein 181605..181814 Orientia tsutsugamushi str. Boryong 5218514 YP_001248186.1 CDS OTBS_0194 NC_009488.1 181891 182073 R hypothetical protein complement(181891..182073) Orientia tsutsugamushi str. Boryong 5218515 YP_001248187.1 CDS OTBS_0199 NC_009488.1 184608 184775 R hypothetical protein complement(184608..184775) Orientia tsutsugamushi str. Boryong 5218520 YP_001248188.1 CDS OTBS_0200 NC_009488.1 184912 185133 R hypothetical protein complement(184912..185133) Orientia tsutsugamushi str. Boryong 5218521 YP_001248189.1 CDS rpmE NC_009488.1 185411 185635 R RpmE; RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(185411..185635) Orientia tsutsugamushi str. Boryong 5218523 YP_001248190.1 CDS rpmB NC_009488.1 185645 185935 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(185645..185935) Orientia tsutsugamushi str. Boryong 5218524 YP_001248191.1 CDS rarD NC_009488.1 186178 187050 D permeases-like integral membrane protein 186178..187050 Orientia tsutsugamushi str. Boryong 5218525 YP_001248192.1 CDS proP NC_009488.1 187314 188324 D proline/betaine transporter 187314..188324 Orientia tsutsugamushi str. Boryong 5218526 YP_001248193.1 CDS pbpE NC_009488.1 190158 191369 R penicillin-binding protein 4* complement(190158..191369) Orientia tsutsugamushi str. Boryong 5218527 YP_001248194.1 CDS aspS NC_009488.1 191395 193188 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(191395..193188) Orientia tsutsugamushi str. Boryong 5218528 YP_001248195.1 CDS rpoC NC_009488.1 193466 197656 R DNA-directed RNA polymerase beta prime chain complement(193466..197656) Orientia tsutsugamushi str. Boryong 5218529 YP_001248196.1 CDS rpoB NC_009488.1 197772 201905 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(197772..201905) Orientia tsutsugamushi str. Boryong 5218530 YP_001248197.1 CDS rplL NC_009488.1 202221 202610 R 50S ribosomal protein L7/L12 complement(202221..202610) Orientia tsutsugamushi str. Boryong 5218531 YP_001248198.1 CDS rplJ NC_009488.1 202632 203141 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(202632..203141) Orientia tsutsugamushi str. Boryong 5218532 YP_001248199.1 CDS rplA NC_009488.1 203145 203891 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(203145..203891) Orientia tsutsugamushi str. Boryong 5218533 YP_001248200.1 CDS rplK NC_009488.1 203895 204341 R 50S ribosomal protein L11 complement(203895..204341) Orientia tsutsugamushi str. Boryong 5218534 YP_001248201.1 CDS nusG NC_009488.1 204381 204935 R transcription antitermination protein complement(204381..204935) Orientia tsutsugamushi str. Boryong 5218535 YP_001248202.1 CDS secE NC_009488.1 204960 205169 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(204960..205169) Orientia tsutsugamushi str. Boryong 5218536 YP_001248203.1 CDS tuf NC_009488.1 205419 206603 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(205419..206603) Orientia tsutsugamushi str. Boryong 5218538 YP_001248204.1 CDS plsC NC_009488.1 206775 207539 R 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(206775..207539) Orientia tsutsugamushi str. Boryong 5218539 YP_001248205.1 CDS recR NC_009488.1 207656 208267 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(207656..208267) Orientia tsutsugamushi str. Boryong 5218540 YP_001248206.1 CDS ispZ NC_009488.1 208356 208892 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(208356..208892) Orientia tsutsugamushi str. Boryong 5218541 YP_001248207.1 CDS OTBS_0219 NC_009488.1 208886 209734 R hypothetical protein complement(208886..209734) Orientia tsutsugamushi str. Boryong 5218542 YP_001248208.1 CDS OTBS_0220 NC_009488.1 209763 210128 R hypothetical protein complement(209763..210128) Orientia tsutsugamushi str. Boryong 5218543 YP_001248209.1 CDS OTBS_0222 NC_009488.1 210594 211826 R hypothetical protein complement(210594..211826) Orientia tsutsugamushi str. Boryong 5218546 YP_001248210.1 CDS glnQ NC_009488.1 212013 212744 R glutamine ABC transporter ATP-binding protein complement(212013..212744) Orientia tsutsugamushi str. Boryong 5218547 YP_001248211.1 CDS yqiY NC_009488.1 212737 213363 R amino acid ABC transporter permease complement(212737..213363) Orientia tsutsugamushi str. Boryong 5218548 YP_001248212.1 CDS OTBS_0227 NC_009488.1 215466 217892 R hypothetical protein complement(215466..217892) Orientia tsutsugamushi str. Boryong 5218551 YP_001248213.1 CDS traN NC_009488.1 222668 224329 R conjugative transfer protein complement(222668..224329) Orientia tsutsugamushi str. Boryong 5218556 YP_001248214.1 CDS trbC NC_009488.1 224352 224672 R conjugative transfer protein complement(224352..224672) Orientia tsutsugamushi str. Boryong 5218557 YP_001248215.1 CDS traC NC_009488.1 226784 227149 R conjugative transfer protein complement(226784..227149) Orientia tsutsugamushi str. Boryong 5218560 YP_001248216.1 CDS rhp2 NC_009488.1 230272 232314 R hypothetical protein complement(230272..232314) Orientia tsutsugamushi str. Boryong 5218564 YP_001248217.1 CDS hkp6 NC_009488.1 233690 235267 R signal transduction histidine kinase complement(233690..235267) Orientia tsutsugamushi str. Boryong 5218567 YP_001248218.1 CDS rhp5 NC_009488.1 235780 236331 R hypothetical protein complement(235780..236331) Orientia tsutsugamushi str. Boryong 5218568 YP_001248219.1 CDS dam3 NC_009488.1 236807 237637 D site-specific DNA adenine methylase 236807..237637 Orientia tsutsugamushi str. Boryong 5218569 YP_001248220.1 CDS ank1u2 NC_009488.1 238025 238777 R ankyrin repeat-containing protein complement(238025..238777) Orientia tsutsugamushi str. Boryong 5218570 YP_001248221.1 CDS infA NC_009488.1 242399 242623 D translation initiation factor IF-1 242399..242623 Orientia tsutsugamushi str. Boryong 5218574 YP_001248222.1 CDS maf NC_009488.1 242649 243266 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 242649..243266 Orientia tsutsugamushi str. Boryong 5218575 YP_001248223.1 CDS OTBS_0251 NC_009488.1 243394 244143 D hypothetical protein 243394..244143 Orientia tsutsugamushi str. Boryong 5218576 YP_001248224.1 CDS gyrA NC_009488.1 244244 246961 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 244244..246961 Orientia tsutsugamushi str. Boryong 5218577 YP_001248225.1 CDS glyA NC_009488.1 246995 248275 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 246995..248275 Orientia tsutsugamushi str. Boryong 5218578 YP_001248226.1 CDS OTBS_0254 NC_009488.1 248963 251455 R hypothetical protein complement(248963..251455) Orientia tsutsugamushi str. Boryong 5218579 YP_001248227.1 CDS rnpA NC_009488.1 251842 252099 R ribonuclease P protein complement(251842..252099) Orientia tsutsugamushi str. Boryong 5218581 YP_001248228.1 CDS rpmH NC_009488.1 252382 252516 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(252382..252516) Orientia tsutsugamushi str. Boryong 5218582 YP_001248229.1 CDS fbcH NC_009488.1 253296 254090 D cytochrome c1, heme protein precursor 253296..254090 Orientia tsutsugamushi str. Boryong 5218584 YP_001248230.1 CDS rph NC_009488.1 254599 255354 R tRNA nucleotidyltransferase complement(254599..255354) Orientia tsutsugamushi str. Boryong 5218585 YP_001248231.1 CDS grpE NC_009488.1 255484 256080 D heat shock molecular chaperone protein 255484..256080 Orientia tsutsugamushi str. Boryong 5218586 YP_001248232.1 CDS rnd NC_009488.1 257219 257851 R ribonuclease D complement(257219..257851) Orientia tsutsugamushi str. Boryong 5218590 YP_001248233.1 CDS OTBS_0266 NC_009488.1 257858 258157 R hypothetical protein complement(257858..258157) Orientia tsutsugamushi str. Boryong 5218591 YP_001248234.1 CDS cdsA NC_009488.1 258165 258821 R phosphatidate cytidylyltransferase complement(258165..258821) Orientia tsutsugamushi str. Boryong 5218592 YP_001248235.1 CDS uppS NC_009488.1 258818 259513 R UDP pyrophosphate synthetase complement(258818..259513) Orientia tsutsugamushi str. Boryong 5218593 YP_001248236.1 CDS abcZ NC_009488.1 259688 261493 D ABC transporter, ATP-binding protein 259688..261493 Orientia tsutsugamushi str. Boryong 5218594 YP_001248237.1 CDS dnaE NC_009488.1 262775 266479 R DNA polymerase III alpha chain complement(262775..266479) Orientia tsutsugamushi str. Boryong 5218597 YP_001248238.1 CDS valS NC_009488.1 266469 269033 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(266469..269033) Orientia tsutsugamushi str. Boryong 5218598 YP_001248239.1 CDS ubiA NC_009488.1 269063 269941 D UbiA prenyltransferase catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 269063..269941 Orientia tsutsugamushi str. Boryong 5218599 YP_001248240.1 CDS OTBS_0275 NC_009488.1 270048 270785 R hypothetical protein complement(270048..270785) Orientia tsutsugamushi str. Boryong 5218600 YP_001248241.1 CDS OTBS_0276 NC_009488.1 270791 270967 R hypothetical protein complement(270791..270967) Orientia tsutsugamushi str. Boryong 5218601 YP_001248242.1 CDS mccF NC_009488.1 271149 272147 D microcin C7 self-immunity protein 271149..272147 Orientia tsutsugamushi str. Boryong 5218602 YP_001248243.1 CDS OTBS_0282 NC_009488.1 275561 276760 R hypothetical protein complement(275561..276760) Orientia tsutsugamushi str. Boryong 5218607 YP_001248244.1 CDS coxB NC_009488.1 277193 277945 R cytochrome c oxidase polypeptide II complement(277193..277945) Orientia tsutsugamushi str. Boryong 5218608 YP_001248245.1 CDS OTBS_0284 NC_009488.1 278100 278576 R hypothetical protein complement(278100..278576) Orientia tsutsugamushi str. Boryong 5218609 YP_001248246.1 CDS TrbL/VirB6 NC_009488.1 279441 281657 D conjugal transfer protein 279441..281657 Orientia tsutsugamushi str. Boryong 5218610 YP_001248247.1 CDS OTBS_0289 NC_009488.1 283403 283642 R hypothetical protein complement(283403..283642) Orientia tsutsugamushi str. Boryong 5218614 YP_001248248.1 CDS tpr1B4 NC_009488.1 283817 284191 R hypothetical protein complement(283817..284191) Orientia tsutsugamushi str. Boryong 5218615 YP_001248249.1 CDS uvrA NC_009488.1 285165 288077 R excinuclease ABC subunit A complement(285165..288077) Orientia tsutsugamushi str. Boryong 5218617 YP_001248250.1 CDS tnE NC_009488.1 289416 290318 D transposase and inactivated derivative 289416..290318 Orientia tsutsugamushi str. Boryong 5218620 YP_001248251.1 CDS ank1C2 NC_009488.1 292823 292987 D ankyrin repeat-containing protein 292823..292987 Orientia tsutsugamushi str. Boryong 5218623 YP_001248252.1 CDS OTBS_0302 NC_009488.1 296218 296598 D hypothetical protein 296218..296598 Orientia tsutsugamushi str. Boryong 5218627 YP_001248253.1 CDS mviN NC_009488.1 296635 298149 R virlence factor, integral membrane protein complement(296635..298149) Orientia tsutsugamushi str. Boryong 5218628 YP_001248254.1 CDS aprD NC_009488.1 299470 301224 D alkaline protease secretion, ATP-binding protein 299470..301224 Orientia tsutsugamushi str. Boryong 5218630 YP_001248255.1 CDS aprE NC_009488.1 301250 302806 D alkaline protease secretion protein 301250..302806 Orientia tsutsugamushi str. Boryong 5218631 YP_001248256.1 CDS tlc NC_009488.1 307658 309190 D ATP/ADP translocase 307658..309190 Orientia tsutsugamushi str. Boryong 5218637 YP_001248257.1 CDS tlc NC_009488.1 309345 310889 D ATP/ADP translocase 309345..310889 Orientia tsutsugamushi str. Boryong 5218638 YP_001248258.1 CDS OTBS_0314 NC_009488.1 310889 312694 D hypothetical protein 310889..312694 Orientia tsutsugamushi str. Boryong 5218639 YP_001248259.1 CDS ispB NC_009488.1 312714 313730 D octaprenyl-diphosphate synthase 312714..313730 Orientia tsutsugamushi str. Boryong 5218640 YP_001248260.1 CDS traC NC_009488.1 314296 314559 D conjugative transfer protein 314296..314559 Orientia tsutsugamushi str. Boryong 5218641 YP_001248261.1 CDS tchE NC_009488.1 315145 315306 D hypothetical protein 315145..315306 Orientia tsutsugamushi str. Boryong 5218643 YP_001248262.1 CDS tnD NC_009488.1 317482 318444 D transposase and inactivated derivative 317482..318444 Orientia tsutsugamushi str. Boryong 5218647 YP_001248263.1 CDS apaG NC_009488.1 324523 324948 D protein associated with Co2+ and Mg2+ efflux; ApaG 324523..324948 Orientia tsutsugamushi str. Boryong 5218654 YP_001248264.1 CDS pleD NC_009488.1 325334 326803 R involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD complement(325334..326803) Orientia tsutsugamushi str. Boryong 5218655 YP_001248265.1 CDS ubiX NC_009488.1 327285 327848 D 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 327285..327848 Orientia tsutsugamushi str. Boryong 5218657 YP_001248266.1 CDS corC NC_009488.1 327898 328812 R Mg2+/Co2+ transporter complement(327898..328812) Orientia tsutsugamushi str. Boryong 5218658 YP_001248267.1 CDS OTBS_0333 NC_009488.1 328825 329328 R metalloprotease complement(328825..329328) Orientia tsutsugamushi str. Boryong 5218659 YP_001248268.1 CDS ftsY NC_009488.1 330765 331703 R cell division ABC transporter, periplasmic substrate-binding protein complement(330765..331703) Orientia tsutsugamushi str. Boryong 5218662 YP_001248269.1 CDS OTBS_0337 NC_009488.1 331813 332202 D hypothetical protein 331813..332202 Orientia tsutsugamushi str. Boryong 5218663 YP_001248270.1 CDS trbG/virB9 NC_009488.1 332462 333223 R conjugal transfer protein complement(332462..333223) Orientia tsutsugamushi str. Boryong 5218664 YP_001248271.1 CDS virB8 NC_009488.1 333213 333914 R type IV secretion system protein complement(333213..333914) Orientia tsutsugamushi str. Boryong 5218665 YP_001248272.1 CDS thyX NC_009488.1 337492 338394 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(337492..338394) Orientia tsutsugamushi str. Boryong 5218668 YP_001248273.1 CDS cinA NC_009488.1 338438 338941 R competence/damaged related protein complement(338438..338941) Orientia tsutsugamushi str. Boryong 5218669 YP_001248274.1 CDS pgpA NC_009488.1 339007 339609 R phosphatidylglycerophosphatase complement(339007..339609) Orientia tsutsugamushi str. Boryong 5218670 YP_001248275.1 CDS rhp4 NC_009488.1 341176 341490 D hypothetical protein 341176..341490 Orientia tsutsugamushi str. Boryong 5218674 YP_001248276.1 CDS perM NC_009488.1 341834 342880 D permease 341834..342880 Orientia tsutsugamushi str. Boryong 5218676 YP_001248277.1 CDS hemA NC_009488.1 342890 344101 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(342890..344101) Orientia tsutsugamushi str. Boryong 5218677 YP_001248278.1 CDS ptrB NC_009488.1 344134 346188 R oligopeptidase B complement(344134..346188) Orientia tsutsugamushi str. Boryong 5218678 YP_001248279.1 CDS rpsT NC_009488.1 346254 346526 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(346254..346526) Orientia tsutsugamushi str. Boryong 5218679 YP_001248280.1 CDS rplQ NC_009488.1 346608 347045 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(346608..347045) Orientia tsutsugamushi str. Boryong 5218680 YP_001248281.1 CDS rpoA NC_009488.1 347064 348092 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(347064..348092) Orientia tsutsugamushi str. Boryong 5218681 YP_001248282.1 CDS rpsK NC_009488.1 348141 348521 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(348141..348521) Orientia tsutsugamushi str. Boryong 5218682 YP_001248283.1 CDS rpsM NC_009488.1 348531 348908 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(348531..348908) Orientia tsutsugamushi str. Boryong 5218683 YP_001248284.1 CDS adk NC_009488.1 348988 349620 R adenylate kinase complement(348988..349620) Orientia tsutsugamushi str. Boryong 5218684 YP_001248285.1 CDS secY NC_009488.1 349629 350936 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(349629..350936) Orientia tsutsugamushi str. Boryong 5218685 YP_001248286.1 CDS rplO NC_009488.1 350938 351429 R 50S ribosomal protein L15 complement(350938..351429) Orientia tsutsugamushi str. Boryong 5218686 YP_001248287.1 CDS rpsE NC_009488.1 351665 352183 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(351665..352183) Orientia tsutsugamushi str. Boryong 5218687 YP_001248288.1 CDS rplR NC_009488.1 352204 352578 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(352204..352578) Orientia tsutsugamushi str. Boryong 5218688 YP_001248289.1 CDS rplF NC_009488.1 352592 353125 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(352592..353125) Orientia tsutsugamushi str. Boryong 5218689 YP_001248290.1 CDS rpsH NC_009488.1 353147 353548 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(353147..353548) Orientia tsutsugamushi str. Boryong 5218690 YP_001248291.1 CDS rpsN NC_009488.1 353571 353876 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(353571..353876) Orientia tsutsugamushi str. Boryong 5218691 YP_001248292.1 CDS rplE NC_009488.1 353895 354464 R 50S ribosomal protein L5 complement(353895..354464) Orientia tsutsugamushi str. Boryong 5218692 YP_001248293.1 CDS rplX NC_009488.1 354477 354797 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(354477..354797) Orientia tsutsugamushi str. Boryong 5218693 YP_001248294.1 CDS rplN NC_009488.1 354799 355167 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(354799..355167) Orientia tsutsugamushi str. Boryong 5218694 YP_001248295.1 CDS rpsQ NC_009488.1 355263 355502 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(355263..355502) Orientia tsutsugamushi str. Boryong 5218695 YP_001248296.1 CDS rpmC NC_009488.1 355503 355724 R 50S ribosomal protein L29 complement(355503..355724) Orientia tsutsugamushi str. Boryong 5218696 YP_001248297.1 CDS rplP NC_009488.1 355717 356127 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(355717..356127) Orientia tsutsugamushi str. Boryong 5218697 YP_001248298.1 CDS rpsC NC_009488.1 356156 356812 R 30S ribosomal protein S3 complement(356156..356812) Orientia tsutsugamushi str. Boryong 5218698 YP_001248299.1 CDS rplV NC_009488.1 356828 357178 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(356828..357178) Orientia tsutsugamushi str. Boryong 5218699 YP_001248300.1 CDS rpsS NC_009488.1 357180 357458 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(357180..357458) Orientia tsutsugamushi str. Boryong 5218700 YP_001248301.1 CDS rplB NC_009488.1 357482 358303 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(357482..358303) Orientia tsutsugamushi str. Boryong 5218701 YP_001248302.1 CDS rplW NC_009488.1 358304 358600 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(358304..358600) Orientia tsutsugamushi str. Boryong 5218702 YP_001248303.1 CDS rplD NC_009488.1 358597 359229 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(358597..359229) Orientia tsutsugamushi str. Boryong 5218703 YP_001248304.1 CDS rplC NC_009488.1 359244 359933 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(359244..359933) Orientia tsutsugamushi str. Boryong 5218704 YP_001248305.1 CDS rpsJ NC_009488.1 359911 360225 R 30S ribosomal protein S10 complement(359911..360225) Orientia tsutsugamushi str. Boryong 5218705 YP_001248306.2 CDS tuf NC_009488.1 360261 361445 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(360261..361445) Orientia tsutsugamushi str. Boryong 5218706 YP_001248307.1 CDS spoU NC_009488.1 361910 362638 D tRNA/rRNA methyltransferase 361910..362638 Orientia tsutsugamushi str. Boryong 5218709 YP_001248308.1 CDS recA NC_009488.1 362733 363803 D recombinase A 362733..363803 Orientia tsutsugamushi str. Boryong 5218710 YP_001248309.1 CDS fabG NC_009488.1 363797 364522 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 363797..364522 Orientia tsutsugamushi str. Boryong 5218711 YP_001248310.1 CDS acpP NC_009488.1 364644 365030 D acyl carrier protein 364644..365030 Orientia tsutsugamushi str. Boryong 5218712 YP_001248311.1 CDS fabF NC_009488.1 365120 366391 D 3-oxoacyl-ACP synthase 365120..366391 Orientia tsutsugamushi str. Boryong 5218713 YP_001248312.1 CDS purC NC_009488.1 368211 368969 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(368211..368969) Orientia tsutsugamushi str. Boryong 5218718 YP_001248313.1 CDS OTBS_0389 NC_009488.1 368929 369375 R oligoketide cyclase/lipid transport protein complement(368929..369375) Orientia tsutsugamushi str. Boryong 5218719 YP_001248314.1 CDS lipA NC_009488.1 369398 370306 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(369398..370306) Orientia tsutsugamushi str. Boryong 5218720 YP_001248315.1 CDS sppA NC_009488.1 370317 371225 R periplasmic serine proteases (ClpP class) complement(370317..371225) Orientia tsutsugamushi str. Boryong 5218721 YP_001248316.1 CDS smpB NC_009488.1 371246 371707 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(371246..371707) Orientia tsutsugamushi str. Boryong 5218722 YP_001248317.1 CDS dapA NC_009488.1 371710 372606 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(371710..372606) Orientia tsutsugamushi str. Boryong 5218723 YP_001248318.1 CDS ilvE NC_009488.1 372587 373489 R branched-chain amino acid aminotransferase complement(372587..373489) Orientia tsutsugamushi str. Boryong 5218724 YP_001248319.1 CDS recD/traA NC_009488.1 373703 375898 R helicase RecD/TraA, ATP-dependent exoDNAse (exonuclease V) complement(373703..375898) Orientia tsutsugamushi str. Boryong 5218725 YP_001248320.1 CDS rplS NC_009488.1 375925 376299 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(375925..376299) Orientia tsutsugamushi str. Boryong 5218726 YP_001248321.1 CDS trmD NC_009488.1 376296 377090 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(376296..377090) Orientia tsutsugamushi str. Boryong 5218727 YP_001248322.1 CDS OTBS_0398 NC_009488.1 377103 378953 R hypothetical protein complement(377103..378953) Orientia tsutsugamushi str. Boryong 5218728 YP_001248323.1 CDS OTBS_0399 NC_009488.1 378955 379521 R hypothetical protein complement(378955..379521) Orientia tsutsugamushi str. Boryong 5218729 YP_001248324.1 CDS tolC NC_009488.1 379572 380948 R outer membrane efflux protein complement(379572..380948) Orientia tsutsugamushi str. Boryong 5218730 YP_001248325.1 CDS xerD NC_009488.1 381291 382220 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 381291..382220 Orientia tsutsugamushi str. Boryong 5218732 YP_001248326.1 CDS traF NC_009488.1 382882 383355 D conjugative pilus assembly protein 382882..383355 Orientia tsutsugamushi str. Boryong 5218733 YP_001248327.1 CDS surf1 NC_009488.1 383350 384072 R surfeit locus protein 1 complement(383350..384072) Orientia tsutsugamushi str. Boryong 5218734 YP_001248328.1 CDS fabZ NC_009488.1 384314 384817 D (3R)-hydroxymyristoyl-ACP dehydratase 384314..384817 Orientia tsutsugamushi str. Boryong 5218735 YP_001248329.1 CDS OTBS_0405 NC_009488.1 384821 385396 D methylase 384821..385396 Orientia tsutsugamushi str. Boryong 5218736 YP_001248330.1 CDS radA NC_009488.1 385396 386751 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 385396..386751 Orientia tsutsugamushi str. Boryong 5218737 YP_001248331.1 CDS rarD NC_009488.1 386790 387710 R permeases-like integral membrane protein complement(386790..387710) Orientia tsutsugamushi str. Boryong 5218738 YP_001248332.1 CDS OTBS_0408 NC_009488.1 387862 389760 D hypothetical protein 387862..389760 Orientia tsutsugamushi str. Boryong 5218739 YP_001248333.1 CDS OTBS_0409 NC_009488.1 389801 391729 D hypothetical protein 389801..391729 Orientia tsutsugamushi str. Boryong 5218740 YP_001248334.1 CDS rhp7 NC_009488.1 393975 394175 D hypothetical protein 393975..394175 Orientia tsutsugamushi str. Boryong 5218745 YP_001248335.1 CDS int NC_009488.1 394300 395544 D phage-related integrase 394300..395544 Orientia tsutsugamushi str. Boryong 5218746 YP_001248336.1 CDS tchA NC_009488.1 395670 396005 D hypothetical protein 395670..396005 Orientia tsutsugamushi str. Boryong 5218747 YP_001248337.1 CDS traE NC_009488.1 396005 396337 D conjugative transfer protein 396005..396337 Orientia tsutsugamushi str. Boryong 5218748 YP_001248338.1 CDS dam4 NC_009488.1 396689 396829 R site-specific DNA adenine methylase complement(396689..396829) Orientia tsutsugamushi str. Boryong 5218749 YP_001248339.1 CDS OTBS_0426 NC_009488.1 402798 402977 R hypothetical protein complement(402798..402977) Orientia tsutsugamushi str. Boryong 5218757 YP_001248340.1 CDS rpmJ NC_009488.1 403332 403457 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(403332..403457) Orientia tsutsugamushi str. Boryong 5218758 YP_001248341.1 CDS trxA NC_009488.1 407866 408192 R thioredoxin complement(407866..408192) Orientia tsutsugamushi str. Boryong 5218765 YP_001248342.1 CDS omp1 NC_009488.1 408211 410580 R hypothetical protein complement(408211..410580) Orientia tsutsugamushi str. Boryong 5218766 YP_001248343.1 CDS OTBS_0436 NC_009488.1 410593 411654 R membrane-associated zinc-dependent metalloprotease complement(410593..411654) Orientia tsutsugamushi str. Boryong 5218767 YP_001248344.1 CDS rmuC NC_009488.1 411764 413104 R DNA recombination protein complement(411764..413104) Orientia tsutsugamushi str. Boryong 5218768 YP_001248345.1 CDS ksgA NC_009488.1 413171 413992 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(413171..413992) Orientia tsutsugamushi str. Boryong 5218769 YP_001248346.1 CDS OTBS_0439 NC_009488.1 414111 414986 R hypothetical protein complement(414111..414986) Orientia tsutsugamushi str. Boryong 5218770 YP_001248347.1 CDS hupA NC_009488.1 415179 415556 R histone-like DNA-binding protein HU complement(415179..415556) Orientia tsutsugamushi str. Boryong 5218771 YP_001248348.1 CDS znuA NC_009488.1 416061 416939 R zinc/manganese ABC transporter substrate binding protein complement(416061..416939) Orientia tsutsugamushi str. Boryong 5218773 YP_001248349.1 CDS pcnB NC_009488.1 416936 418144 R poly(A) polymerase complement(416936..418144) Orientia tsutsugamushi str. Boryong 5218774 YP_001248350.1 CDS gltP NC_009488.1 418197 419408 R proton/glutamate symporter complement(418197..419408) Orientia tsutsugamushi str. Boryong 5218775 YP_001248351.1 CDS uvrD NC_009488.1 419574 423038 R ATP-dependent DNA helicase UvrD complement(419574..423038) Orientia tsutsugamushi str. Boryong 5218776 YP_001248352.1 CDS sixA NC_009488.1 423050 423541 R phosphohistidine phosphatase complement(423050..423541) Orientia tsutsugamushi str. Boryong 5218777 YP_001248353.1 CDS dapB NC_009488.1 423605 424456 R dihydrodipicolinate reductase complement(423605..424456) Orientia tsutsugamushi str. Boryong 5218778 YP_001248354.1 CDS yqiX NC_009488.1 424463 425266 R amino acid ABC transporter substrate-binding protein complement(424463..425266) Orientia tsutsugamushi str. Boryong 5218779 YP_001248355.1 CDS cox11 NC_009488.1 426076 426603 D involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 426076..426603 Orientia tsutsugamushi str. Boryong 5218781 YP_001248356.1 CDS rpmF NC_009488.1 427452 427658 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(427452..427658) Orientia tsutsugamushi str. Boryong 5218783 YP_001248357.1 CDS smpA NC_009488.1 427755 428120 D outer membrane lipoprotein 427755..428120 Orientia tsutsugamushi str. Boryong 5218784 YP_001248358.1 CDS era NC_009488.1 428648 429568 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(428648..429568) Orientia tsutsugamushi str. Boryong 5218786 YP_001248359.1 CDS OTBS_0455 NC_009488.1 429565 430584 R hypothetical protein complement(429565..430584) Orientia tsutsugamushi str. Boryong 5218787 YP_001248360.1 CDS prfA NC_009488.1 430788 431867 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(430788..431867) Orientia tsutsugamushi str. Boryong 5218788 YP_001248361.1 CDS OTBS_0457 NC_009488.1 432003 432173 R hypothetical protein complement(432003..432173) Orientia tsutsugamushi str. Boryong 5218789 YP_001248362.1 CDS ank1B1 NC_009488.1 436440 437612 R ankyrin repeat-containing protein complement(436440..437612) Orientia tsutsugamushi str. Boryong 5218793 YP_001248363.1 CDS gppA NC_009488.1 439896 441359 D Ppx/GppA phosphatase 439896..441359 Orientia tsutsugamushi str. Boryong 5218797 YP_001248364.1 CDS OTBS_0467 NC_009488.1 442860 443591 D intradiol ring-cleavage dioxygenase 442860..443591 Orientia tsutsugamushi str. Boryong 5218799 YP_001248365.1 CDS leuS NC_009488.1 444207 446723 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 444207..446723 Orientia tsutsugamushi str. Boryong 5218800 YP_001248366.1 CDS holA NC_009488.1 446743 447762 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 446743..447762 Orientia tsutsugamushi str. Boryong 5218801 YP_001248367.1 CDS mgtE NC_009488.1 447949 449316 D magnesium transporter 447949..449316 Orientia tsutsugamushi str. Boryong 5218803 YP_001248368.1 CDS OTBS_0471 NC_009488.1 449414 450925 R Zn-dependent carboxypeptidase complement(449414..450925) Orientia tsutsugamushi str. Boryong 5218804 YP_001248369.1 CDS spoT7 NC_009488.1 455919 456494 D spoT-like ppGpp hydrolase 455919..456494 Orientia tsutsugamushi str. Boryong 5218808 YP_001248370.1 CDS ank1C3 NC_009488.1 456532 457176 D ankyrin repeat-containing protein 456532..457176 Orientia tsutsugamushi str. Boryong 5218809 YP_001248371.1 CDS OTBS_0478 NC_009488.1 458721 459254 R hypothetical protein complement(458721..459254) Orientia tsutsugamushi str. Boryong 5218811 YP_001248372.1 CDS OTBS_0480 NC_009488.1 459972 460247 D hypothetical protein 459972..460247 Orientia tsutsugamushi str. Boryong 5218813 YP_001248373.1 CDS spoT8 NC_009488.1 461149 461754 D spoT-like ppGpp hydrolase 461149..461754 Orientia tsutsugamushi str. Boryong 5218816 YP_001248374.1 CDS tnE NC_009488.1 461876 462826 D transposase and inactivated derivative 461876..462826 Orientia tsutsugamushi str. Boryong 5218817 YP_001248375.1 CDS ank1u4 NC_009488.1 465327 466304 D ankyrin repeat-containing protein 465327..466304 Orientia tsutsugamushi str. Boryong 5218819 YP_001248376.1 CDS traV NC_009488.1 467552 467881 R conjugative transfer protein complement(467552..467881) Orientia tsutsugamushi str. Boryong 5218821 YP_001248377.1 CDS traB NC_009488.1 467881 468258 R conjugative pilus assembly protein complement(467881..468258) Orientia tsutsugamushi str. Boryong 5218822 YP_001248378.1 CDS tchB NC_009488.1 468332 468487 R hypothetical protein complement(468332..468487) Orientia tsutsugamushi str. Boryong 5218823 YP_001248379.1 CDS rpsD NC_009488.1 470143 470766 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(470143..470766) Orientia tsutsugamushi str. Boryong 5218825 YP_001248380.1 CDS OTBS_0493 NC_009488.1 470902 471654 D hypothetical protein 470902..471654 Orientia tsutsugamushi str. Boryong 5218826 YP_001248381.1 CDS OTBS_0495 NC_009488.1 471837 472742 D ABC transporter permease 471837..472742 Orientia tsutsugamushi str. Boryong 5218828 YP_001248382.1 CDS mkl NC_009488.1 472771 473526 D ribonucleotide ABC transporter ATP-binding protein 472771..473526 Orientia tsutsugamushi str. Boryong 5218829 YP_001248383.1 CDS recJ NC_009488.1 473697 475457 R single-stranded-DNA-specific exonuclease complement(473697..475457) Orientia tsutsugamushi str. Boryong 5218830 YP_001248384.1 CDS yqgF NC_009488.1 475471 475944 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(475471..475944) Orientia tsutsugamushi str. Boryong 5218831 YP_001248385.1 CDS OTBS_0499 NC_009488.1 475941 476855 R hypothetical protein complement(475941..476855) Orientia tsutsugamushi str. Boryong 5218832 YP_001248386.1 CDS ccmE NC_009488.1 476882 477238 R cytochrome c-type biogenesis protein complement(476882..477238) Orientia tsutsugamushi str. Boryong 5218833 YP_001248387.1 CDS qor NC_009488.1 477577 478740 D NADP-dependent quinone oxidoreductase 477577..478740 Orientia tsutsugamushi str. Boryong 5218834 YP_001248388.1 CDS tchA NC_009488.1 479832 480167 R hypothetical protein complement(479832..480167) Orientia tsutsugamushi str. Boryong 5218835 YP_001248389.1 CDS OTBS_0505 NC_009488.1 482873 483172 R hypothetical protein complement(482873..483172) Orientia tsutsugamushi str. Boryong 5218838 YP_001248390.1 CDS OTBS_0507 NC_009488.1 484202 484381 D hypothetical protein 484202..484381 Orientia tsutsugamushi str. Boryong 5218840 YP_001248391.1 CDS traE NC_009488.1 485917 486456 D conjugative transfer protein 485917..486456 Orientia tsutsugamushi str. Boryong 5218844 YP_001248392.1 CDS tchC NC_009488.1 486590 486922 D hypothetical protein 486590..486922 Orientia tsutsugamushi str. Boryong 5218845 YP_001248393.1 CDS panF NC_009488.1 489026 490429 R sodium/pantothenate symporter complement(489026..490429) Orientia tsutsugamushi str. Boryong 5218848 YP_001248394.1 CDS ampG1 NC_009488.1 490445 491707 R major facilitator superfamily permease complement(490445..491707) Orientia tsutsugamushi str. Boryong 5218849 YP_001248395.1 CDS traD_Ti NC_009488.1 495996 496394 D conjugative transfer protein 495996..496394 Orientia tsutsugamushi str. Boryong 5218852 YP_001248396.1 CDS rhp4 NC_009488.1 496482 497054 D hypothetical protein 496482..497054 Orientia tsutsugamushi str. Boryong 5218853 YP_001248397.1 CDS OTBS_0523 NC_009488.1 498404 498676 R hypothetical protein complement(498404..498676) Orientia tsutsugamushi str. Boryong 5218856 YP_001248398.1 CDS tpr1B7 NC_009488.1 498904 499596 R hypothetical protein complement(498904..499596) Orientia tsutsugamushi str. Boryong 5218857 YP_001248399.1 CDS trbC NC_009488.1 501543 501863 R conjugative transfer protein complement(501543..501863) Orientia tsutsugamushi str. Boryong 5218859 YP_001248400.1 CDS traV NC_009488.1 502820 503110 R conjugative transfer protein complement(502820..503110) Orientia tsutsugamushi str. Boryong 5218861 YP_001248401.1 CDS traB NC_009488.1 503110 503574 R conjugative pilus assembly protein complement(503110..503574) Orientia tsutsugamushi str. Boryong 5218862 YP_001248402.1 CDS tchB NC_009488.1 503686 504087 R hypothetical protein complement(503686..504087) Orientia tsutsugamushi str. Boryong 5218863 YP_001248403.1 CDS tchA NC_009488.1 504635 504970 R hypothetical protein complement(504635..504970) Orientia tsutsugamushi str. Boryong 5218865 YP_001248404.1 CDS OTBS_0535 NC_009488.1 507893 508078 R hypothetical protein complement(507893..508078) Orientia tsutsugamushi str. Boryong 5218870 YP_001248405.1 CDS bcp NC_009488.1 515073 515543 D bacterioferritin comigratory protein 515073..515543 Orientia tsutsugamushi str. Boryong 5218879 YP_001248406.1 CDS tlc NC_009488.1 517685 519172 R ATP/ADP translocase complement(517685..519172) Orientia tsutsugamushi str. Boryong 5218882 YP_001248407.1 CDS rplI NC_009488.1 519314 519841 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(519314..519841) Orientia tsutsugamushi str. Boryong 5218883 YP_001248408.1 CDS rpsR NC_009488.1 519884 520192 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(519884..520192) Orientia tsutsugamushi str. Boryong 5218884 YP_001248409.1 CDS rpsF NC_009488.1 520240 520596 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(520240..520596) Orientia tsutsugamushi str. Boryong 5218885 YP_001248410.1 CDS phoB NC_009488.1 520889 521638 D PhoB-like response regulator 520889..521638 Orientia tsutsugamushi str. Boryong 5218886 YP_001248411.1 CDS msbA1 NC_009488.1 521744 523414 D multidrug resistance protein, ABC-type multidrug transport system, ATPase and permease components 521744..523414 Orientia tsutsugamushi str. Boryong 5218887 YP_001248412.1 CDS tig NC_009488.1 523915 525405 R FKBP-type peptidylprolyl isomerase complement(523915..525405) Orientia tsutsugamushi str. Boryong 5218889 YP_001248413.1 CDS dapE NC_009488.1 525557 526723 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(525557..526723) Orientia tsutsugamushi str. Boryong 5218891 YP_001248414.1 CDS htpG NC_009488.1 526886 528778 R molecular chaperone; heat shock protein 90 complement(526886..528778) Orientia tsutsugamushi str. Boryong 5218892 YP_001248415.1 CDS rpmI NC_009488.1 529224 529430 D 50S ribosomal protein L35 529224..529430 Orientia tsutsugamushi str. Boryong 5218893 YP_001248416.1 CDS rplT NC_009488.1 529450 529815 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 529450..529815 Orientia tsutsugamushi str. Boryong 5218894 YP_001248417.1 CDS OTBS_0563 NC_009488.1 534801 534980 D hypothetical protein 534801..534980 Orientia tsutsugamushi str. Boryong 5218899 YP_001248418.1 CDS rpsP NC_009488.1 535813 536139 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(535813..536139) Orientia tsutsugamushi str. Boryong 5218901 YP_001248419.1 CDS rpmG NC_009488.1 536148 536315 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(536148..536315) Orientia tsutsugamushi str. Boryong 5218902 YP_001248420.1 CDS tnA NC_009488.1 539483 540244 D transposase and inactivated derivative 539483..540244 Orientia tsutsugamushi str. Boryong 5218906 YP_001248421.1 CDS OTBS_0570 NC_009488.1 540449 541228 R hypothetical protein complement(540449..541228) Orientia tsutsugamushi str. Boryong 5218907 YP_001248422.1 CDS argS NC_009488.1 541225 542997 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(541225..542997) Orientia tsutsugamushi str. Boryong 5218908 YP_001248423.1 CDS iscA NC_009488.1 543163 543507 D iron-binding protein IscA/HesB 543163..543507 Orientia tsutsugamushi str. Boryong 5218909 YP_001248424.1 CDS gltX NC_009488.1 543508 544968 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(543508..544968) Orientia tsutsugamushi str. Boryong 5218910 YP_001248425.1 CDS alaS NC_009488.1 545284 547959 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(545284..547959) Orientia tsutsugamushi str. Boryong 5218911 YP_001248426.1 CDS OTBS_0575 NC_009488.1 548086 549699 D hypothetical protein 548086..549699 Orientia tsutsugamushi str. Boryong 5218912 YP_001248427.1 CDS OTBS_0576 NC_009488.1 549701 550330 D hypothetical protein 549701..550330 Orientia tsutsugamushi str. Boryong 5218913 YP_001248428.1 CDS atpG NC_009488.1 550341 551213 R H(+)-transporting two-sector ATPase F(1) gamma subunit precursor complement(550341..551213) Orientia tsutsugamushi str. Boryong 5218914 YP_001248429.1 CDS atpA NC_009488.1 551246 552784 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(551246..552784) Orientia tsutsugamushi str. Boryong 5218915 YP_001248430.1 CDS atpH NC_009488.1 552827 553372 R H(+)-transporting two-sector ATPase F(1) delta subunit complement(552827..553372) Orientia tsutsugamushi str. Boryong 5218916 YP_001248431.1 CDS dut NC_009488.1 553467 553913 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(553467..553913) Orientia tsutsugamushi str. Boryong 5218917 YP_001248432.1 CDS infC NC_009488.1 554226 554768 R translation initiation factor IF-3 complement(554226..554768) Orientia tsutsugamushi str. Boryong 5218919 YP_001248433.1 CDS thrS NC_009488.1 554782 556728 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(554782..556728) Orientia tsutsugamushi str. Boryong 5218920 YP_001248434.1 CDS folC NC_009488.1 556979 558319 D folylpolyglutamate synthase 556979..558319 Orientia tsutsugamushi str. Boryong 5218921 YP_001248435.1 CDS ppiC NC_009488.1 558422 559453 R peptidylprolyl isomerase complement(558422..559453) Orientia tsutsugamushi str. Boryong 5218922 YP_001248436.1 CDS secA NC_009488.1 559699 562341 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 559699..562341 Orientia tsutsugamushi str. Boryong 5218923 YP_001248437.1 CDS invA NC_009488.1 567296 567781 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(567296..567781) Orientia tsutsugamushi str. Boryong 5218927 YP_001248438.1 CDS recF NC_009488.1 573045 574196 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(573045..574196) Orientia tsutsugamushi str. Boryong 5218933 YP_001248439.1 CDS ftsQ NC_009488.1 574202 575014 R cell division protein complement(574202..575014) Orientia tsutsugamushi str. Boryong 5218934 YP_001248440.1 CDS ddl NC_009488.1 575025 575900 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(575025..575900) Orientia tsutsugamushi str. Boryong 5218935 YP_001248441.1 CDS murB NC_009488.1 575977 576888 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(575977..576888) Orientia tsutsugamushi str. Boryong 5218936 YP_001248442.1 CDS murC NC_009488.1 576857 578365 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(576857..578365) Orientia tsutsugamushi str. Boryong 5218937 YP_001248443.1 CDS OTBS_0601 NC_009488.1 578541 579272 R hypothetical protein complement(578541..579272) Orientia tsutsugamushi str. Boryong 5218938 YP_001248444.1 CDS OTBS_0602 NC_009488.1 579500 581098 R hypothetical protein complement(579500..581098) Orientia tsutsugamushi str. Boryong 5218939 YP_001248445.1 CDS glyQ NC_009488.1 581646 582524 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 581646..582524 Orientia tsutsugamushi str. Boryong 5218940 YP_001248446.1 CDS glyS NC_009488.1 582517 584568 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 582517..584568 Orientia tsutsugamushi str. Boryong 5218941 YP_001248447.1 CDS OTBS_0605 NC_009488.1 584546 585514 D translation factor protein 584546..585514 Orientia tsutsugamushi str. Boryong 5218942 YP_001248448.1 CDS tnE NC_009488.1 588927 589877 R transposase and inactivated derivative complement(588927..589877) Orientia tsutsugamushi str. Boryong 5218946 YP_001248449.1 CDS spoT11 NC_009488.1 593413 593988 D spoT-like ppGpp hydrolase 593413..593988 Orientia tsutsugamushi str. Boryong 5218950 YP_001248450.1 CDS ank1C4 NC_009488.1 594028 594672 D ankyrin repeat-containing protein 594028..594672 Orientia tsutsugamushi str. Boryong 5218951 YP_001248451.1 CDS rhp6 NC_009488.1 594775 595278 D ompA-like autotransporter 594775..595278 Orientia tsutsugamushi str. Boryong 5218952 YP_001248452.1 CDS dam5 NC_009488.1 595279 595875 R site-specific DNA adenine methylase complement(595279..595875) Orientia tsutsugamushi str. Boryong 5218953 YP_001248453.1 CDS hkp10 NC_009488.1 596185 597066 D signal transduction histidine kinase 596185..597066 Orientia tsutsugamushi str. Boryong 5218955 YP_001248454.1 CDS hkp11 NC_009488.1 598133 598837 D signal transduction histidine kinase 598133..598837 Orientia tsutsugamushi str. Boryong 5218957 YP_001248455.1 CDS hkp12 NC_009488.1 598848 599795 D signal transduction histidine kinase 598848..599795 Orientia tsutsugamushi str. Boryong 5218958 YP_001248456.1 CDS spoT12 NC_009488.1 600331 600936 D spoT-like ppGpp hydrolase 600331..600936 Orientia tsutsugamushi str. Boryong 5218960 YP_001248457.1 CDS tnE NC_009488.1 601058 601984 D transposase and inactivated derivative 601058..601984 Orientia tsutsugamushi str. Boryong 5218961 YP_001248458.1 CDS rhp4 NC_009488.1 604221 604820 R hypothetical protein complement(604221..604820) Orientia tsutsugamushi str. Boryong 5218964 YP_001248459.1 CDS traD_Ti NC_009488.1 604850 605290 R conjugative transfer protein complement(604850..605290) Orientia tsutsugamushi str. Boryong 5218965 YP_001248460.1 CDS tnE NC_009488.1 610166 611077 D transposase and inactivated derivative 610166..611077 Orientia tsutsugamushi str. Boryong 5218967 YP_001248461.1 CDS tpr1B8 NC_009488.1 612834 613496 R hypothetical protein complement(612834..613496) Orientia tsutsugamushi str. Boryong 5218969 YP_001248462.1 CDS traN NC_009488.1 617483 619144 R conjugative transfer protein complement(617483..619144) Orientia tsutsugamushi str. Boryong 5218973 YP_001248463.1 CDS trbC NC_009488.1 619167 619487 R conjugative transfer protein complement(619167..619487) Orientia tsutsugamushi str. Boryong 5218974 YP_001248464.1 CDS traU NC_009488.1 619568 620269 R conjugative transfer protein complement(619568..620269) Orientia tsutsugamushi str. Boryong 5219223 YP_001248465.1 CDS OTBS_0639 NC_009488.1 620783 621598 R hypothetical protein complement(620783..621598) Orientia tsutsugamushi str. Boryong 5219224 YP_001248466.1 CDS traV NC_009488.1 622871 623023 R conjugative transfer protein complement(622871..623023) Orientia tsutsugamushi str. Boryong 5219226 YP_001248467.1 CDS tchC NC_009488.1 624602 624934 R hypothetical protein complement(624602..624934) Orientia tsutsugamushi str. Boryong 5219229 YP_001248468.1 CDS tchB NC_009488.1 625070 625558 R hypothetical protein complement(625070..625558) Orientia tsutsugamushi str. Boryong 5219230 YP_001248469.1 CDS tchA NC_009488.1 626107 626442 R hypothetical protein complement(626107..626442) Orientia tsutsugamushi str. Boryong 5219232 YP_001248470.1 CDS dnaB9 NC_009488.1 629941 630909 D replicative DNA helicase 629941..630909 Orientia tsutsugamushi str. Boryong 5219236 YP_001248471.1 CDS OTBS_0658 NC_009488.1 636586 637104 R hypothetical protein complement(636586..637104) Orientia tsutsugamushi str. Boryong 5219243 YP_001248472.1 CDS OTBS_0662 NC_009488.1 641055 642533 D amino acid/peptide transporter 641055..642533 Orientia tsutsugamushi str. Boryong 5219248 YP_001248473.1 CDS fumC NC_009488.1 642697 644097 R fumarate hydratase complement(642697..644097) Orientia tsutsugamushi str. Boryong 5219249 YP_001248474.1 CDS OTBS_0664 NC_009488.1 644161 644838 R hypothetical protein complement(644161..644838) Orientia tsutsugamushi str. Boryong 5219250 YP_001248475.1 CDS OTBS_0671 NC_009488.1 649915 651516 D hypothetical protein 649915..651516 Orientia tsutsugamushi str. Boryong 5219257 YP_001248476.1 CDS grxC NC_009488.1 651950 652333 R glutaredoxin complement(651950..652333) Orientia tsutsugamushi str. Boryong 5219259 YP_001248477.1 CDS OTBS_0674 NC_009488.1 652541 652969 R hypothetical protein complement(652541..652969) Orientia tsutsugamushi str. Boryong 5219260 YP_001248478.1 CDS OTBS_0675 NC_009488.1 653067 653879 R hypothetical protein complement(653067..653879) Orientia tsutsugamushi str. Boryong 5219261 YP_001248479.1 CDS OTBS_0676 NC_009488.1 653883 654482 R hypothetical protein complement(653883..654482) Orientia tsutsugamushi str. Boryong 5219262 YP_001248480.1 CDS OTBS_0677 NC_009488.1 654475 654900 R hypothetical protein complement(654475..654900) Orientia tsutsugamushi str. Boryong 5219263 YP_001248481.1 CDS OTBS_0678 NC_009488.1 654900 655241 R hypothetical protein complement(654900..655241) Orientia tsutsugamushi str. Boryong 5219264 YP_001248482.1 CDS OTBS_0679 NC_009488.1 655243 655788 R hypothetical protein complement(655243..655788) Orientia tsutsugamushi str. Boryong 5219265 YP_001248483.1 CDS OTBS_0680 NC_009488.1 655822 656937 R phage major capsid protein, HK97 complement(655822..656937) Orientia tsutsugamushi str. Boryong 5219266 YP_001248484.1 CDS OTBS_0681 NC_009488.1 656949 657503 R peptidase U35 complement(656949..657503) Orientia tsutsugamushi str. Boryong 5219267 YP_001248485.1 CDS lacA NC_009488.1 661216 661698 R ribose-5-phosphate isomerase complement(661216..661698) Orientia tsutsugamushi str. Boryong 5219270 YP_001248486.1 CDS rhp4 NC_009488.1 662001 662315 R hypothetical protein complement(662001..662315) Orientia tsutsugamushi str. Boryong 5219272 YP_001248487.1 CDS ank1u5 NC_009488.1 664452 665486 R ankyrin repeat-containing protein complement(664452..665486) Orientia tsutsugamushi str. Boryong 5219277 YP_001248488.1 CDS abcT3 NC_009488.1 667543 669324 R multidrug resistance ABC transporter ATP-binding protein complement(667543..669324) Orientia tsutsugamushi str. Boryong 5219281 YP_001248489.1 CDS pyrH NC_009488.1 669377 670126 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(669377..670126) Orientia tsutsugamushi str. Boryong 5219282 YP_001248490.1 CDS mraY NC_009488.1 670352 671443 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(670352..671443) Orientia tsutsugamushi str. Boryong 5219283 YP_001248491.1 CDS murF NC_009488.1 671433 672848 R UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase complement(671433..672848) Orientia tsutsugamushi str. Boryong 5219284 YP_001248492.1 CDS murE NC_009488.1 672845 674314 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(672845..674314) Orientia tsutsugamushi str. Boryong 5219285 YP_001248493.1 CDS pbpA2 NC_009488.1 674301 676052 R penicillin-binding protein complement(674301..676052) Orientia tsutsugamushi str. Boryong 5219286 YP_001248494.1 CDS mraW NC_009488.1 676555 677493 R S-adenosyl-methyltransferase MraW complement(676555..677493) Orientia tsutsugamushi str. Boryong 5219288 YP_001248495.1 CDS dnaJ NC_009488.1 677562 678695 R chaperone protein complement(677562..678695) Orientia tsutsugamushi str. Boryong 5219289 YP_001248496.1 CDS dnaK NC_009488.1 678783 680711 R chaperone protein complement(678783..680711) Orientia tsutsugamushi str. Boryong 5219290 YP_001248497.1 CDS bolA NC_009488.1 681091 681378 R BolA-like stress-induced morphogen complement(681091..681378) Orientia tsutsugamushi str. Boryong 5219291 YP_001248498.1 CDS fabI NC_009488.1 681585 682382 D enoyl-ACP reductase 681585..682382 Orientia tsutsugamushi str. Boryong 5219292 YP_001248499.1 CDS rhp7 NC_009488.1 684094 684294 D hypothetical protein 684094..684294 Orientia tsutsugamushi str. Boryong 5219295 YP_001248500.1 CDS tchA NC_009488.1 685790 686125 D hypothetical protein 685790..686125 Orientia tsutsugamushi str. Boryong 5219297 YP_001248501.1 CDS dam6 NC_009488.1 686809 686949 R site-specific DNA adenine methylase complement(686809..686949) Orientia tsutsugamushi str. Boryong 5219299 YP_001248502.1 CDS traW NC_009488.1 689989 690648 D conjugative transfer protein 689989..690648 Orientia tsutsugamushi str. Boryong 5219301 YP_001248503.1 CDS tchE NC_009488.1 690731 690919 D hypothetical protein 690731..690919 Orientia tsutsugamushi str. Boryong 5219302 YP_001248504.1 CDS trbC NC_009488.1 691998 692318 D conjugative transfer protein 691998..692318 Orientia tsutsugamushi str. Boryong 5219304 YP_001248505.1 CDS tpr1B9 NC_009488.1 694297 695271 D hypothetical protein 694297..695271 Orientia tsutsugamushi str. Boryong 5219307 YP_001248506.1 CDS OTBS_0724 NC_009488.1 701426 701626 D hypothetical protein 701426..701626 Orientia tsutsugamushi str. Boryong 5219310 YP_001248507.1 CDS OTBS_0726 NC_009488.1 702947 704683 D hypothetical protein 702947..704683 Orientia tsutsugamushi str. Boryong 5219312 YP_001248508.1 CDS rhp4 NC_009488.1 706053 706598 D hypothetical protein 706053..706598 Orientia tsutsugamushi str. Boryong 5219314 YP_001248509.1 CDS spoT15 NC_009488.1 706666 707259 R spoT-like ppGpp hydrolase complement(706666..707259) Orientia tsutsugamushi str. Boryong 5219315 YP_001248510.1 CDS hkp15 NC_009488.1 708156 708983 R signal transduction histidine kinase complement(708156..708983) Orientia tsutsugamushi str. Boryong 5219317 YP_001248511.1 CDS OTBS_0732 NC_009488.1 709675 711579 D hypothetical protein 709675..711579 Orientia tsutsugamushi str. Boryong 5219318 YP_001248512.1 CDS rhp6 NC_009488.1 712997 713371 R ompA-like autotransporter complement(712997..713371) Orientia tsutsugamushi str. Boryong 5219321 YP_001248513.1 CDS atpC NC_009488.1 715181 715585 R ATP synthase subunit epsilon complement(715181..715585) Orientia tsutsugamushi str. Boryong 5219323 YP_001248514.1 CDS atpD NC_009488.1 715582 717018 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(715582..717018) Orientia tsutsugamushi str. Boryong 5219324 YP_001248515.1 CDS OTBS_0740 NC_009488.1 717368 718519 R glycosyltransferase complement(717368..718519) Orientia tsutsugamushi str. Boryong 5219326 YP_001248516.1 CDS OTBS_0741 NC_009488.1 718543 719316 D aplha/beta hydrolase 718543..719316 Orientia tsutsugamushi str. Boryong 5219327 YP_001248517.1 CDS mltE1 NC_009488.1 719706 721703 R soluble lytic murein transglycosylase precursor (slt) complement(719706..721703) Orientia tsutsugamushi str. Boryong 5219328 YP_001248518.1 CDS fabD NC_009488.1 721745 722683 D ACP S-malonyltransferase 721745..722683 Orientia tsutsugamushi str. Boryong 5219329 YP_001248519.1 CDS rhp7 NC_009488.1 725551 725697 R hypothetical protein complement(725551..725697) Orientia tsutsugamushi str. Boryong 5219335 YP_001248520.1 CDS tnA NC_009488.1 728016 728891 R transposase and inactivated derivative complement(728016..728891) Orientia tsutsugamushi str. Boryong 5219338 YP_001248521.1 CDS hkp16 NC_009488.1 729183 729647 D signal transduction histidine kinase 729183..729647 Orientia tsutsugamushi str. Boryong 5219339 YP_001248522.1 CDS spoT16 NC_009488.1 730183 730788 D spoT-like ppGpp hydrolase 730183..730788 Orientia tsutsugamushi str. Boryong 5219341 YP_001248523.1 CDS tnE NC_009488.1 730910 731836 D transposase and inactivated derivative 730910..731836 Orientia tsutsugamushi str. Boryong 5219342 YP_001248524.1 CDS tpr1B10 NC_009488.1 734395 737169 R TPR and ankyrin repeat-containing protein complement(734395..737169) Orientia tsutsugamushi str. Boryong 5219344 YP_001248525.1 CDS trpS NC_009488.1 739629 740636 D tryptophanyl-tRNA synthetase 739629..740636 Orientia tsutsugamushi str. Boryong 5219348 YP_001248526.1 CDS OTBS_0765 NC_009488.1 742649 742849 D hypothetical protein 742649..742849 Orientia tsutsugamushi str. Boryong 5219351 YP_001248527.1 CDS ppdK NC_009488.1 743709 746414 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 743709..746414 Orientia tsutsugamushi str. Boryong 5219353 YP_001248528.1 CDS OTBS_0769 NC_009488.1 748150 748824 R hypothetical protein complement(748150..748824) Orientia tsutsugamushi str. Boryong 5219355 YP_001248529.1 CDS OTBS_0770 NC_009488.1 748942 749133 D hypothetical protein 748942..749133 Orientia tsutsugamushi str. Boryong 5219356 YP_001248530.1 CDS OTBS_0771 NC_009488.1 750181 750909 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 750181..750909 Orientia tsutsugamushi str. Boryong 5219357 YP_001248531.1 CDS OTBS_0772 NC_009488.1 750965 751189 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C 750965..751189 Orientia tsutsugamushi str. Boryong 5219358 YP_001248532.1 CDS OTBS_0773 NC_009488.1 751197 751694 D ATP synthase subunit B 751197..751694 Orientia tsutsugamushi str. Boryong 5219359 YP_001248533.1 CDS OTBS_0774 NC_009488.1 751849 752172 D hypothetical protein 751849..752172 Orientia tsutsugamushi str. Boryong 5219360 YP_001248534.1 CDS ftsK NC_009488.1 754918 757206 R DNA translocase FtsK complement(754918..757206) Orientia tsutsugamushi str. Boryong 5219365 YP_001248535.1 CDS OTBS_0780 NC_009488.1 757297 757668 R hypothetical protein complement(757297..757668) Orientia tsutsugamushi str. Boryong 5219366 YP_001248536.1 CDS abcT1 NC_009488.1 757701 759368 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(757701..759368) Orientia tsutsugamushi str. Boryong 5219367 YP_001248537.1 CDS OTBS_0782 NC_009488.1 759509 760342 R hypothetical protein complement(759509..760342) Orientia tsutsugamushi str. Boryong 5219368 YP_001248538.1 CDS ffh NC_009488.1 762807 764159 D signal recognition particle protein 762807..764159 Orientia tsutsugamushi str. Boryong 5219371 YP_001248539.1 CDS cutA NC_009488.1 764215 764571 D periplasmic divalent cation tolerance protein 764215..764571 Orientia tsutsugamushi str. Boryong 5219372 YP_001248540.1 CDS OTBS_0787 NC_009488.1 765324 766154 D hypothetical protein 765324..766154 Orientia tsutsugamushi str. Boryong 5219373 YP_001248541.1 CDS gmpk NC_009488.1 766361 767026 D guanylate kinase 766361..767026 Orientia tsutsugamushi str. Boryong 5219374 YP_001248542.1 CDS OTBS_0789 NC_009488.1 767160 767534 D hypothetical protein 767160..767534 Orientia tsutsugamushi str. Boryong 5219375 YP_001248543.1 CDS OTBS_0790 NC_009488.1 767525 769804 D hypothetical protein 767525..769804 Orientia tsutsugamushi str. Boryong 5219376 YP_001248544.1 CDS traD_Ti NC_009488.1 779055 779453 D conjugative transfer protein 779055..779453 Orientia tsutsugamushi str. Boryong 5219384 YP_001248545.1 CDS rhp4 NC_009488.1 779541 780119 D hypothetical protein 779541..780119 Orientia tsutsugamushi str. Boryong 5219385 YP_001248546.1 CDS spoT18 NC_009488.1 780197 780772 R spoT-like ppGpp hydrolase complement(780197..780772) Orientia tsutsugamushi str. Boryong 5219386 YP_001248547.1 CDS OTBS_0803 NC_009488.1 784108 784326 R hypothetical protein complement(784108..784326) Orientia tsutsugamushi str. Boryong 5219389 YP_001248548.1 CDS OTBS_0805 NC_009488.1 785940 786689 R sulfurtransferase complement(785940..786689) Orientia tsutsugamushi str. Boryong 5219391 YP_001248549.1 CDS OTBS_0806 NC_009488.1 786802 787437 R hypothetical protein complement(786802..787437) Orientia tsutsugamushi str. Boryong 5219392 YP_001248550.1 CDS OTBS_0809 NC_009488.1 788108 788533 D hypothetical protein 788108..788533 Orientia tsutsugamushi str. Boryong 5219395 YP_001248551.1 CDS OTBS_0811 NC_009488.1 789696 790856 R hypothetical protein complement(789696..790856) Orientia tsutsugamushi str. Boryong 5219397 YP_001248552.1 CDS ank2A4 NC_009488.1 795886 798006 D ankyrin repeat-containing protein 795886..798006 Orientia tsutsugamushi str. Boryong 5219402 YP_001248553.1 CDS dam8 NC_009488.1 798296 799102 R site-specific DNA adenine methylase complement(798296..799102) Orientia tsutsugamushi str. Boryong 5219403 YP_001248554.1 CDS hkp46 NC_009488.1 799820 800074 D signal transduction histidine kinase 799820..800074 Orientia tsutsugamushi str. Boryong 5219404 YP_001248555.1 CDS hkp18 NC_009488.1 800151 801422 D signal transduction histidine kinase 800151..801422 Orientia tsutsugamushi str. Boryong 5219405 YP_001248556.1 CDS spoT19 NC_009488.1 801556 802125 D spoT-like ppGpp hydrolase 801556..802125 Orientia tsutsugamushi str. Boryong 5219406 YP_001248557.1 CDS OTBS_0821 NC_009488.1 802149 802667 R hypothetical protein complement(802149..802667) Orientia tsutsugamushi str. Boryong 5219407 YP_001248558.1 CDS OTBS_0822 NC_009488.1 802814 803089 R hypothetical protein complement(802814..803089) Orientia tsutsugamushi str. Boryong 5219408 YP_001248559.1 CDS traD_F NC_009488.1 809270 810226 R conjugative transfer protein complement(809270..810226) Orientia tsutsugamushi str. Boryong 5219412 YP_001248560.1 CDS trbC NC_009488.1 814237 814557 R conjugative transfer protein complement(814237..814557) Orientia tsutsugamushi str. Boryong 5219417 YP_001248561.1 CDS traV NC_009488.1 815514 815804 R conjugative transfer protein complement(815514..815804) Orientia tsutsugamushi str. Boryong 5219419 YP_001248562.1 CDS traB NC_009488.1 815804 816268 R conjugative pilus assembly protein complement(815804..816268) Orientia tsutsugamushi str. Boryong 5219420 YP_001248563.1 CDS tchB NC_009488.1 816380 816781 R hypothetical protein complement(816380..816781) Orientia tsutsugamushi str. Boryong 5219421 YP_001248564.1 CDS tchA NC_009488.1 817329 817664 R hypothetical protein complement(817329..817664) Orientia tsutsugamushi str. Boryong 5219423 YP_001248565.1 CDS int NC_009488.1 817790 819034 R phage-related integrase complement(817790..819034) Orientia tsutsugamushi str. Boryong 5219424 YP_001248566.1 CDS rhp7 NC_009488.1 819159 819359 R hypothetical protein complement(819159..819359) Orientia tsutsugamushi str. Boryong 5219425 YP_001248567.1 CDS OTBS_0841 NC_009488.1 819658 823095 R Na+/proline symporter complement(819658..823095) Orientia tsutsugamushi str. Boryong 5219427 YP_001248568.1 CDS icd NC_009488.1 823734 825293 R catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase complement(823734..825293) Orientia tsutsugamushi str. Boryong 5219429 YP_001248569.1 CDS hemC NC_009488.1 825467 826363 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 825467..826363 Orientia tsutsugamushi str. Boryong 5219430 YP_001248570.1 CDS proP NC_009488.1 826664 827884 D proline/betaine transporter 826664..827884 Orientia tsutsugamushi str. Boryong 5219431 YP_001248571.1 CDS rhp9 NC_009488.1 832139 833761 D RNA-binding protein 832139..833761 Orientia tsutsugamushi str. Boryong 5219436 YP_001248572.1 CDS rhp2 NC_009488.1 834316 836184 D hypothetical protein 834316..836184 Orientia tsutsugamushi str. Boryong 5219439 YP_001248573.1 CDS tdcB NC_009488.1 836751 837764 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(836751..837764) Orientia tsutsugamushi str. Boryong 5219441 YP_001248574.1 CDS lon NC_009488.1 837881 840241 D ATP-dependent protease La 837881..840241 Orientia tsutsugamushi str. Boryong 5219442 YP_001248575.1 CDS OTBS_0856 NC_009488.1 840318 840968 R hypothetical protein complement(840318..840968) Orientia tsutsugamushi str. Boryong 5219443 YP_001248576.1 CDS comF NC_009488.1 841098 841847 R competence protein F complement(841098..841847) Orientia tsutsugamushi str. Boryong 5219444 YP_001248577.1 CDS miaA NC_009488.1 841828 842865 R tRNA delta(2)-isopentenylpyrophosphate transferase complement(841828..842865) Orientia tsutsugamushi str. Boryong 5219445 YP_001248578.1 CDS rnhB NC_009488.1 842936 843553 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 842936..843553 Orientia tsutsugamushi str. Boryong 5219446 YP_001248579.1 CDS OTBS_0860 NC_009488.1 844116 844367 D hypothetical protein 844116..844367 Orientia tsutsugamushi str. Boryong 5219447 YP_001248580.1 CDS rhp8 NC_009488.1 847165 849114 R ompA-like, autotransporter complement(847165..849114) Orientia tsutsugamushi str. Boryong 5219451 YP_001248581.1 CDS ank2A5 NC_009488.1 852262 854418 R ankyrin repeat-containing protein complement(852262..854418) Orientia tsutsugamushi str. Boryong 5219458 YP_001248582.1 CDS traD_F NC_009488.1 857766 858722 R conjugative transfer protein complement(857766..858722) Orientia tsutsugamushi str. Boryong 5219461 YP_001248583.1 CDS traN NC_009488.1 861043 862704 R conjugative transfer protein complement(861043..862704) Orientia tsutsugamushi str. Boryong 5219465 YP_001248584.1 CDS trbC NC_009488.1 862727 863047 R conjugative transfer protein complement(862727..863047) Orientia tsutsugamushi str. Boryong 5219466 YP_001248585.1 CDS traV NC_009488.1 864004 864294 R conjugative transfer protein complement(864004..864294) Orientia tsutsugamushi str. Boryong 5219468 YP_001248586.1 CDS traB NC_009488.1 864294 864758 R conjugative pilus assembly protein complement(864294..864758) Orientia tsutsugamushi str. Boryong 5219469 YP_001248587.1 CDS tchB NC_009488.1 864870 865271 R hypothetical protein complement(864870..865271) Orientia tsutsugamushi str. Boryong 5219470 YP_001248588.1 CDS traE NC_009488.1 865268 865819 R conjugative transfer protein complement(865268..865819) Orientia tsutsugamushi str. Boryong 5219471 YP_001248589.1 CDS tchA NC_009488.1 865819 866154 R hypothetical protein complement(865819..866154) Orientia tsutsugamushi str. Boryong 5219472 YP_001248590.1 CDS OTBS_0889 NC_009488.1 870119 870811 R hypothetical protein complement(870119..870811) Orientia tsutsugamushi str. Boryong 5219476 YP_001248591.1 CDS traD_Ti NC_009488.1 874105 874503 D conjugative transfer protein 874105..874503 Orientia tsutsugamushi str. Boryong 5219479 YP_001248592.1 CDS OTBS_0893 NC_009488.1 874577 875512 R hypothetical protein complement(874577..875512) Orientia tsutsugamushi str. Boryong 5219480 YP_001248593.1 CDS hkp21 NC_009488.1 878054 878605 R signal transduction histidine kinase complement(878054..878605) Orientia tsutsugamushi str. Boryong 5219485 YP_001248594.1 CDS OTBS_0899 NC_009488.1 878840 879112 R hypothetical protein complement(878840..879112) Orientia tsutsugamushi str. Boryong 5219486 YP_001248595.1 CDS rhp6 NC_009488.1 880284 880814 R ompA-like autotransporter complement(880284..880814) Orientia tsutsugamushi str. Boryong 5219488 YP_001248596.1 CDS ank1C6 NC_009488.1 880834 880962 R ankyrin repeat-containing protein complement(880834..880962) Orientia tsutsugamushi str. Boryong 5219489 YP_001248597.1 CDS yhbH NC_009488.1 882855 883205 R sigma(54) modulation protein complement(882855..883205) Orientia tsutsugamushi str. Boryong 5219493 YP_001248598.1 CDS pleC NC_009488.1 883451 884998 D PleC-like histidine kinase 883451..884998 Orientia tsutsugamushi str. Boryong 5219494 YP_001248599.1 CDS dnaB14 NC_009488.1 886020 887483 D unwinds double stranded DNA; replicative DNA helicase 886020..887483 Orientia tsutsugamushi str. Boryong 5219498 YP_001248600.1 CDS ank1B2 NC_009488.1 887972 889144 R ankyrin repeat-containing protein complement(887972..889144) Orientia tsutsugamushi str. Boryong 5219499 YP_001248601.1 CDS groES NC_009488.1 890975 891271 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 890975..891271 Orientia tsutsugamushi str. Boryong 5219503 YP_001248602.1 CDS groEL NC_009488.1 891344 893008 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 891344..893008 Orientia tsutsugamushi str. Boryong 5219504 YP_001248603.1 CDS acpS NC_009488.1 894159 894554 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(894159..894554) Orientia tsutsugamushi str. Boryong 5219505 YP_001248604.1 CDS spoT21 NC_009488.1 894565 896700 R spoT-like bifunctional ppGpp synthetase/hydrolase complement(894565..896700) Orientia tsutsugamushi str. Boryong 5219506 YP_001248605.1 CDS OTBS_0920 NC_009488.1 896718 897116 R hypothetical protein complement(896718..897116) Orientia tsutsugamushi str. Boryong 5219507 YP_001248606.1 CDS OTBS_0921 NC_009488.1 897471 898211 D hypothetical protein 897471..898211 Orientia tsutsugamushi str. Boryong 5219508 YP_001248607.1 CDS OTBS_0922 NC_009488.1 898385 898714 D hypothetical protein 898385..898714 Orientia tsutsugamushi str. Boryong 5219509 YP_001248608.1 CDS OTBS_0923 NC_009488.1 898737 899114 D hypothetical protein 898737..899114 Orientia tsutsugamushi str. Boryong 5219510 YP_001248609.1 CDS obgE NC_009488.1 899134 900123 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 899134..900123 Orientia tsutsugamushi str. Boryong 5219511 YP_001248610.1 CDS tatA NC_009488.1 900644 900802 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin-arginine translocation protein TatA 900644..900802 Orientia tsutsugamushi str. Boryong 5219512 YP_001248611.1 CDS OTBS_0926 NC_009488.1 901227 901751 R hypothetical protein complement(901227..901751) Orientia tsutsugamushi str. Boryong 5219513 YP_001248612.1 CDS tnD NC_009488.1 904060 905022 R transposase and inactivated derivative complement(904060..905022) Orientia tsutsugamushi str. Boryong 5219516 YP_001248613.1 CDS ank1D2 NC_009488.1 907472 908653 R ankyrin repeat-containing protein complement(907472..908653) Orientia tsutsugamushi str. Boryong 5219520 YP_001248614.1 CDS trbC NC_009488.1 910508 910828 R conjugative transfer protein complement(910508..910828) Orientia tsutsugamushi str. Boryong 5219522 YP_001248615.1 CDS traV NC_009488.1 911785 912075 R conjugative transfer protein complement(911785..912075) Orientia tsutsugamushi str. Boryong 5219524 YP_001248616.1 CDS traB NC_009488.1 912075 912539 R conjugative pilus assembly protein complement(912075..912539) Orientia tsutsugamushi str. Boryong 5219525 YP_001248617.1 CDS tchB NC_009488.1 912651 913052 R hypothetical protein complement(912651..913052) Orientia tsutsugamushi str. Boryong 5219526 YP_001248618.1 CDS traE NC_009488.1 913049 913600 R conjugative transfer protein complement(913049..913600) Orientia tsutsugamushi str. Boryong 5219527 YP_001248619.1 CDS tchA NC_009488.1 913600 913935 R hypothetical protein complement(913600..913935) Orientia tsutsugamushi str. Boryong 5219528 YP_001248620.1 CDS int NC_009488.1 914061 915305 R phage-related integrase complement(914061..915305) Orientia tsutsugamushi str. Boryong 5219529 YP_001248621.1 CDS rhp7 NC_009488.1 915430 915630 R hypothetical protein complement(915430..915630) Orientia tsutsugamushi str. Boryong 5219530 YP_001248622.1 CDS OTBS_0945 NC_009488.1 916176 916877 R hypothetical protein complement(916176..916877) Orientia tsutsugamushi str. Boryong 5219532 YP_001248623.1 CDS OTBS_0946 NC_009488.1 916897 917682 R hypothetical protein complement(916897..917682) Orientia tsutsugamushi str. Boryong 5219533 YP_001248624.1 CDS efp NC_009488.1 917679 918248 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(917679..918248) Orientia tsutsugamushi str. Boryong 5219534 YP_001248625.1 CDS clpX NC_009488.1 918454 919707 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 918454..919707 Orientia tsutsugamushi str. Boryong 5219535 YP_001248626.1 CDS proS NC_009488.1 919835 921136 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(919835..921136) Orientia tsutsugamushi str. Boryong 5219536 YP_001248627.1 CDS OTBS_0950 NC_009488.1 921150 921443 R hypothetical protein complement(921150..921443) Orientia tsutsugamushi str. Boryong 5219537 YP_001248628.1 CDS OTBS_0951 NC_009488.1 921467 922678 R phosphoglycerate kinase complement(921467..922678) Orientia tsutsugamushi str. Boryong 5219538 YP_001248629.1 CDS gap NC_009488.1 922760 923776 R glyceraldehyde-3-phosphate dehydrogenase complement(922760..923776) Orientia tsutsugamushi str. Boryong 5219539 YP_001248630.1 CDS virB4-2 NC_009488.1 924051 926504 D virB4 protein precursor 924051..926504 Orientia tsutsugamushi str. Boryong 5219540 YP_001248631.1 CDS OTBS_0954 NC_009488.1 926504 931030 D hypothetical protein 926504..931030 Orientia tsutsugamushi str. Boryong 5219541 YP_001248632.1 CDS ank1u6 NC_009488.1 936436 937311 D ankyrin repeat-containing protein 936436..937311 Orientia tsutsugamushi str. Boryong 5219546 YP_001248633.1 CDS hkp22 NC_009488.1 938525 940126 D signal transduction histidine kinase 938525..940126 Orientia tsutsugamushi str. Boryong 5219548 YP_001248634.1 CDS spoT22 NC_009488.1 940227 940802 D spoT-like ppGpp hydrolase 940227..940802 Orientia tsutsugamushi str. Boryong 5219549 YP_001248635.1 CDS rhp4 NC_009488.1 940880 941458 R hypothetical protein complement(940880..941458) Orientia tsutsugamushi str. Boryong 5219550 YP_001248636.1 CDS traD_Ti NC_009488.1 941546 941944 R conjugative transfer protein complement(941546..941944) Orientia tsutsugamushi str. Boryong 5219551 YP_001248637.1 CDS rhp4 NC_009488.1 947706 948239 R hypothetical protein complement(947706..948239) Orientia tsutsugamushi str. Boryong 5219555 YP_001248638.1 CDS OTBS_0977 NC_009488.1 956112 956657 D hypothetical protein 956112..956657 Orientia tsutsugamushi str. Boryong 5219564 YP_001248639.1 CDS OTBS_0978 NC_009488.1 956650 963549 D hypothetical protein 956650..963549 Orientia tsutsugamushi str. Boryong 5219565 YP_001248640.1 CDS trbC NC_009488.1 970650 970970 R conjugative transfer protein complement(970650..970970) Orientia tsutsugamushi str. Boryong 5219572 YP_001248641.1 CDS traV NC_009488.1 971927 972217 R conjugative transfer protein complement(971927..972217) Orientia tsutsugamushi str. Boryong 5219574 YP_001248642.1 CDS traB NC_009488.1 972217 972681 R conjugative pilus assembly protein complement(972217..972681) Orientia tsutsugamushi str. Boryong 5219575 YP_001248643.1 CDS tchB NC_009488.1 972793 973194 R hypothetical protein complement(972793..973194) Orientia tsutsugamushi str. Boryong 5219576 YP_001248644.1 CDS traE NC_009488.1 973191 973742 R conjugative transfer protein complement(973191..973742) Orientia tsutsugamushi str. Boryong 5219577 YP_001248645.1 CDS tchA NC_009488.1 973742 974077 R hypothetical protein complement(973742..974077) Orientia tsutsugamushi str. Boryong 5219578 YP_001248646.1 CDS OTBS_0993 NC_009488.1 976186 976569 D hypothetical protein 976186..976569 Orientia tsutsugamushi str. Boryong 5219580 YP_001248647.1 CDS OTBS_0995 NC_009488.1 977497 979233 R export ATP-binding/permease complement(977497..979233) Orientia tsutsugamushi str. Boryong 5219582 YP_001248648.1 CDS cyaY NC_009488.1 979217 979549 R iron-binding and oxidizing protein complement(979217..979549) Orientia tsutsugamushi str. Boryong 5219583 YP_001248649.1 CDS OTBS_0999 NC_009488.1 980453 984568 D hypothetical protein 980453..984568 Orientia tsutsugamushi str. Boryong 5219586 YP_001248650.1 CDS OTBS_1004 NC_009488.1 990100 990489 R hypothetical protein complement(990100..990489) Orientia tsutsugamushi str. Boryong 5219591 YP_001248651.1 CDS OTBS_1007 NC_009488.1 992981 993181 R hypothetical protein complement(992981..993181) Orientia tsutsugamushi str. Boryong 5219594 YP_001248652.1 CDS OTBS_1008 NC_009488.1 993559 993993 R hypothetical protein complement(993559..993993) Orientia tsutsugamushi str. Boryong 5219595 YP_001248653.1 CDS hemH NC_009488.1 994002 995036 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(994002..995036) Orientia tsutsugamushi str. Boryong 5219596 YP_001248654.1 CDS hemE NC_009488.1 995029 996057 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(995029..996057) Orientia tsutsugamushi str. Boryong 5219597 YP_001248655.1 CDS rho NC_009488.1 997544 999049 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 997544..999049 Orientia tsutsugamushi str. Boryong 5219599 YP_001248656.1 CDS OTBS_1014 NC_009488.1 999791 999979 D hypothetical protein 999791..999979 Orientia tsutsugamushi str. Boryong 5219601 YP_001248657.1 CDS OTBS_1016 NC_009488.1 1001545 1002828 D hypothetical protein 1001545..1002828 Orientia tsutsugamushi str. Boryong 5219603 YP_001248658.1 CDS gidA NC_009488.1 1003489 1005357 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 1003489..1005357 Orientia tsutsugamushi str. Boryong 5219604 YP_001248659.1 CDS tmk NC_009488.1 1005497 1006150 R thymidylate kinase complement(1005497..1006150) Orientia tsutsugamushi str. Boryong 5219605 YP_001248660.1 CDS n2B NC_009488.1 1006143 1007216 R ATPase n2B complement(1006143..1007216) Orientia tsutsugamushi str. Boryong 5219606 YP_001248661.1 CDS engA NC_009488.1 1007979 1009343 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(1007979..1009343) Orientia tsutsugamushi str. Boryong 5219608 YP_001248662.1 CDS polA NC_009488.1 1009404 1012136 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(1009404..1012136) Orientia tsutsugamushi str. Boryong 5219609 YP_001248663.1 CDS panF NC_009488.1 1012521 1013975 R sodium/pantothenate symporter complement(1012521..1013975) Orientia tsutsugamushi str. Boryong 5219610 YP_001248664.1 CDS OTBS_1024 NC_009488.1 1014315 1014473 D hypothetical protein 1014315..1014473 Orientia tsutsugamushi str. Boryong 5219611 YP_001248665.1 CDS OTBS_1026 NC_009488.1 1015690 1016520 D hypothetical protein 1015690..1016520 Orientia tsutsugamushi str. Boryong 5219613 YP_001248666.1 CDS secF NC_009488.1 1020494 1021456 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1020494..1021456) Orientia tsutsugamushi str. Boryong 5219620 YP_001248667.1 CDS mutS NC_009488.1 1021504 1024173 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1021504..1024173) Orientia tsutsugamushi str. Boryong 5219621 YP_001248668.1 CDS tlc NC_009488.1 1024226 1025758 R ATP/ADP translocase complement(1024226..1025758) Orientia tsutsugamushi str. Boryong 5219622 YP_001248669.1 CDS OTBS_1036 NC_009488.1 1026123 1026980 D methyltransferase 1026123..1026980 Orientia tsutsugamushi str. Boryong 5219624 YP_001248670.1 CDS serS NC_009488.1 1026982 1028271 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1026982..1028271) Orientia tsutsugamushi str. Boryong 5219625 YP_001248671.1 CDS tatC NC_009488.1 1028249 1029016 R sec-independent protein translocase complement(1028249..1029016) Orientia tsutsugamushi str. Boryong 5219626 YP_001248672.1 CDS gidB NC_009488.1 1029162 1029758 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1029162..1029758 Orientia tsutsugamushi str. Boryong 5219627 YP_001248673.1 CDS parA NC_009488.1 1029765 1030562 D chromosome partitioning protein 1029765..1030562 Orientia tsutsugamushi str. Boryong 5219628 YP_001248674.1 CDS parB NC_009488.1 1030574 1031455 D chromosome partitioning protein 1030574..1031455 Orientia tsutsugamushi str. Boryong 5219629 YP_001248675.1 CDS OTBS_1045 NC_009488.1 1033625 1033906 R hypothetical protein complement(1033625..1033906) Orientia tsutsugamushi str. Boryong 5219633 YP_001248676.1 CDS xseB NC_009488.1 1033960 1034199 D exodeoxyribonuclease VII small subunit 1033960..1034199 Orientia tsutsugamushi str. Boryong 5219634 YP_001248677.1 CDS tchD NC_009488.1 1036968 1038692 D hypothetical protein 1036968..1038692 Orientia tsutsugamushi str. Boryong 5219639 YP_001248678.1 CDS ank1C7 NC_009488.1 1038911 1039786 D ankyrin repeat-containing protein 1038911..1039786 Orientia tsutsugamushi str. Boryong 5219640 YP_001248679.1 CDS rhp6 NC_009488.1 1039880 1040383 D ompA-like autotransporter 1039880..1040383 Orientia tsutsugamushi str. Boryong 5219641 YP_001248680.1 CDS OTBS_1059 NC_009488.1 1043523 1045349 R hypothetical protein complement(1043523..1045349) Orientia tsutsugamushi str. Boryong 5219647 YP_001248681.1 CDS traV NC_009488.1 1049455 1049748 R conjugative transfer protein complement(1049455..1049748) Orientia tsutsugamushi str. Boryong 5219654 YP_001248682.1 CDS traB NC_009488.1 1049762 1050232 R conjugative pilus assembly protein complement(1049762..1050232) Orientia tsutsugamushi str. Boryong 5219655 YP_001248683.1 CDS tnB NC_009488.1 1052149 1053015 D transposase and inactivated derivative 1052149..1053015 Orientia tsutsugamushi str. Boryong 5219657 YP_001248684.1 CDS dam11 NC_009488.1 1053121 1053924 R site-specific DNA adenine methylase complement(1053121..1053924) Orientia tsutsugamushi str. Boryong 5219658 YP_001248685.1 CDS rhp5 NC_009488.1 1054400 1055116 D hypothetical protein 1054400..1055116 Orientia tsutsugamushi str. Boryong 5219659 YP_001248686.1 CDS hkp23 NC_009488.1 1055468 1056211 D signal transduction histidine kinase 1055468..1056211 Orientia tsutsugamushi str. Boryong 5219660 YP_001248687.1 CDS hkp24 NC_009488.1 1056219 1057076 D signal transduction histidine kinase 1056219..1057076 Orientia tsutsugamushi str. Boryong 5219661 YP_001248688.1 CDS spoT23 NC_009488.1 1057177 1057752 D spoT-like ppGpp hydrolase 1057177..1057752 Orientia tsutsugamushi str. Boryong 5219662 YP_001248689.1 CDS rhp4 NC_009488.1 1057789 1058328 R hypothetical protein complement(1057789..1058328) Orientia tsutsugamushi str. Boryong 5219663 YP_001248690.1 CDS traD_Ti NC_009488.1 1058416 1058871 R conjugative transfer protein complement(1058416..1058871) Orientia tsutsugamushi str. Boryong 5219664 YP_001248691.1 CDS OTBS_1077 NC_009488.1 1058873 1059073 R hypothetical protein complement(1058873..1059073) Orientia tsutsugamushi str. Boryong 5219665 YP_001248692.1 CDS tnE NC_009488.1 1063669 1064580 D transposase and inactivated derivative 1063669..1064580 Orientia tsutsugamushi str. Boryong 5219667 YP_001248693.1 CDS tpr1B11 NC_009488.1 1066337 1066999 R hypothetical protein complement(1066337..1066999) Orientia tsutsugamushi str. Boryong 5219669 YP_001248694.1 CDS traN NC_009488.1 1070986 1072647 R conjugative transfer protein complement(1070986..1072647) Orientia tsutsugamushi str. Boryong 5219673 YP_001248695.1 CDS trbC NC_009488.1 1072670 1072990 R conjugative transfer protein complement(1072670..1072990) Orientia tsutsugamushi str. Boryong 5219674 YP_001248696.1 CDS traV NC_009488.1 1073947 1074237 R conjugative transfer protein complement(1073947..1074237) Orientia tsutsugamushi str. Boryong 5219676 YP_001248697.1 CDS traB NC_009488.1 1074237 1074701 R conjugative pilus assembly protein complement(1074237..1074701) Orientia tsutsugamushi str. Boryong 5219677 YP_001248698.1 CDS tchB NC_009488.1 1074813 1075214 R hypothetical protein complement(1074813..1075214) Orientia tsutsugamushi str. Boryong 5219678 YP_001248699.1 CDS traE NC_009488.1 1075211 1075762 R conjugative transfer protein complement(1075211..1075762) Orientia tsutsugamushi str. Boryong 5219679 YP_001248700.1 CDS tchA NC_009488.1 1075762 1076097 R hypothetical protein complement(1075762..1076097) Orientia tsutsugamushi str. Boryong 5219680 YP_001248701.1 CDS OTBS_1096 NC_009488.1 1078504 1078917 D hypothetical protein 1078504..1078917 Orientia tsutsugamushi str. Boryong 5219684 YP_001248702.1 CDS fdxB NC_009488.1 1082856 1083200 R ferredoxin-like iron-sulfur cluster-binding protein complement(1082856..1083200) Orientia tsutsugamushi str. Boryong 5219689 YP_001248703.1 CDS hscA NC_009488.1 1083217 1085067 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(1083217..1085067) Orientia tsutsugamushi str. Boryong 5219690 YP_001248704.1 CDS hscB NC_009488.1 1085054 1085557 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(1085054..1085557) Orientia tsutsugamushi str. Boryong 5219691 YP_001248705.1 CDS iscA NC_009488.1 1085569 1085943 R iron-sulfur cluster assembly accessory protein complement(1085569..1085943) Orientia tsutsugamushi str. Boryong 5219692 YP_001248706.1 CDS iscU NC_009488.1 1085956 1086381 R FeS cluster assembly scaffold protein complement(1085956..1086381) Orientia tsutsugamushi str. Boryong 5219693 YP_001248707.1 CDS iscR NC_009488.1 1089005 1089451 R iron-sulfur cluster assembly transcription regulation factor complement(1089005..1089451) Orientia tsutsugamushi str. Boryong 5219695 YP_001248708.1 CDS OTBS_1108 NC_009488.1 1089656 1090357 D hypothetical protein 1089656..1090357 Orientia tsutsugamushi str. Boryong 5219696 YP_001248709.1 CDS ftsA NC_009488.1 1090651 1091898 D cell division protein 1090651..1091898 Orientia tsutsugamushi str. Boryong 5219698 YP_001248710.1 CDS OTBS_1110 NC_009488.1 1091877 1093178 D hypothetical protein 1091877..1093178 Orientia tsutsugamushi str. Boryong 5219699 YP_001248711.1 CDS OTBS_1111 NC_009488.1 1093163 1094914 D glycosyl transferase, group 2 1093163..1094914 Orientia tsutsugamushi str. Boryong 5219700 YP_001248712.1 CDS OTBS_1112 NC_009488.1 1094956 1095120 D hypothetical protein 1094956..1095120 Orientia tsutsugamushi str. Boryong 5219701 YP_001248713.1 CDS rpoD NC_009488.1 1100845 1102689 R RNA polymerase sigma factor complement(1100845..1102689) Orientia tsutsugamushi str. Boryong 5219709 YP_001248714.1 CDS dnaG NC_009488.1 1102673 1104448 R synthesizes RNA primers at the replication forks; DNA primase complement(1102673..1104448) Orientia tsutsugamushi str. Boryong 5219710 YP_001248715.1 CDS dprA NC_009488.1 1105368 1106528 R DNA processing protein complement(1105368..1106528) Orientia tsutsugamushi str. Boryong 5219712 YP_001248716.1 CDS tdpX1 NC_009488.1 1106569 1107171 R thioredoxin peroxidase 1 complement(1106569..1107171) Orientia tsutsugamushi str. Boryong 5219713 YP_001248717.1 CDS OTBS_1130 NC_009488.1 1112456 1112623 R hypothetical protein complement(1112456..1112623) Orientia tsutsugamushi str. Boryong 5219720 YP_001248718.1 CDS OTBS_1131 NC_009488.1 1112705 1112941 R hypothetical protein complement(1112705..1112941) Orientia tsutsugamushi str. Boryong 5219721 YP_001248719.1 CDS ank1F1 NC_009488.1 1115280 1116767 D ankyrin repeat-containing protein 1115280..1116767 Orientia tsutsugamushi str. Boryong 5219723 YP_001248720.1 CDS pepA NC_009488.1 1117555 1119207 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1117555..1119207 Orientia tsutsugamushi str. Boryong 5219725 YP_001248721.1 CDS OTBS_1136 NC_009488.1 1119191 1120042 D hypothetical protein 1119191..1120042 Orientia tsutsugamushi str. Boryong 5219726 YP_001248722.1 CDS rpsB NC_009488.1 1120317 1121243 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1120317..1121243 Orientia tsutsugamushi str. Boryong 5219728 YP_001248723.1 CDS tsf NC_009488.1 1121240 1122169 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1121240..1122169 Orientia tsutsugamushi str. Boryong 5219729 YP_001248724.1 CDS pheT NC_009488.1 1122249 1124687 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1122249..1124687) Orientia tsutsugamushi str. Boryong 5219730 YP_001248725.1 CDS pheS NC_009488.1 1124684 1125718 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1124684..1125718) Orientia tsutsugamushi str. Boryong 5219731 YP_001248726.1 CDS tchA NC_009488.1 1129556 1129891 D hypothetical protein 1129556..1129891 Orientia tsutsugamushi str. Boryong 5219739 YP_001248727.1 CDS tchB NC_009488.1 1130439 1130840 D hypothetical protein 1130439..1130840 Orientia tsutsugamushi str. Boryong 5219741 YP_001248728.1 CDS traB NC_009488.1 1130952 1131416 D conjugative pilus assembly protein 1130952..1131416 Orientia tsutsugamushi str. Boryong 5219742 YP_001248729.1 CDS traV NC_009488.1 1131416 1131706 D conjugative transfer protein 1131416..1131706 Orientia tsutsugamushi str. Boryong 5219743 YP_001248730.1 CDS trbC NC_009488.1 1132663 1132983 D conjugative transfer protein 1132663..1132983 Orientia tsutsugamushi str. Boryong 5219745 YP_001248731.1 CDS tpr1B12 NC_009488.1 1140518 1141180 D hypothetical protein 1140518..1141180 Orientia tsutsugamushi str. Boryong 5219751 YP_001248732.1 CDS tnD NC_009488.1 1142241 1143203 D transposase and inactivated derivative 1142241..1143203 Orientia tsutsugamushi str. Boryong 5219753 YP_001248733.1 CDS hkp25 NC_009488.1 1144006 1144863 R signal transduction histidine kinase complement(1144006..1144863) Orientia tsutsugamushi str. Boryong 5219755 YP_001248734.1 CDS hkp26 NC_009488.1 1144868 1145614 R signal transduction histidine kinase complement(1144868..1145614) Orientia tsutsugamushi str. Boryong 5219756 YP_001248735.1 CDS dam12 NC_009488.1 1145963 1146175 D site-specific DNA adenine methylase 1145963..1146175 Orientia tsutsugamushi str. Boryong 5219757 YP_001248736.1 CDS rhp4 NC_009488.1 1146267 1146797 R hypothetical protein complement(1146267..1146797) Orientia tsutsugamushi str. Boryong 5219758 YP_001248737.1 CDS OTBS_1169 NC_009488.1 1147127 1147354 D hypothetical protein 1147127..1147354 Orientia tsutsugamushi str. Boryong 5219759 YP_001248738.1 CDS rhp6 NC_009488.1 1148093 1148614 R ompA-like autotransporter complement(1148093..1148614) Orientia tsutsugamushi str. Boryong 5219761 YP_001248739.1 CDS ank1C8 NC_009488.1 1148716 1149090 R ankyrin repeat-containing protein complement(1148716..1149090) Orientia tsutsugamushi str. Boryong 5219762 YP_001248740.1 CDS ank1C9 NC_009488.1 1151442 1151714 R ankyrin repeat-containing protein complement(1151442..1151714) Orientia tsutsugamushi str. Boryong 5219764 YP_001248741.1 CDS spoT26 NC_009488.1 1151754 1152329 R spoT-like ppGpp hydrolase complement(1151754..1152329) Orientia tsutsugamushi str. Boryong 5219765 YP_001248742.1 CDS OTBS_1179 NC_009488.1 1156397 1157488 R hypothetical protein complement(1156397..1157488) Orientia tsutsugamushi str. Boryong 5219769 YP_001248743.1 CDS hkp27 NC_009488.1 1158845 1159591 D signal transduction histidine kinase 1158845..1159591 Orientia tsutsugamushi str. Boryong 5219771 YP_001248744.1 CDS hkp28 NC_009488.1 1159596 1160453 D signal transduction histidine kinase 1159596..1160453 Orientia tsutsugamushi str. Boryong 5219772 YP_001248745.1 CDS tnD NC_009488.1 1161256 1162218 R transposase and inactivated derivative complement(1161256..1162218) Orientia tsutsugamushi str. Boryong 5219775 YP_001248746.1 CDS tpr1B13 NC_009488.1 1163279 1163941 R hypothetical protein complement(1163279..1163941) Orientia tsutsugamushi str. Boryong 5219777 YP_001248747.1 CDS OTBS_1191 NC_009488.1 1168113 1168502 R hypothetical protein complement(1168113..1168502) Orientia tsutsugamushi str. Boryong 5219781 YP_001248748.1 CDS OTBS_1192 NC_009488.1 1168559 1168765 D hypothetical protein 1168559..1168765 Orientia tsutsugamushi str. Boryong 5219782 YP_001248749.1 CDS tpr1B14 NC_009488.1 1168612 1168920 R hypothetical protein complement(1168612..1168920) Orientia tsutsugamushi str. Boryong 5219783 YP_001248750.1 CDS ank1u7 NC_009488.1 1169661 1170698 D ankyrin repeat-containing protein 1169661..1170698 Orientia tsutsugamushi str. Boryong 5219785 YP_001248751.1 CDS tnD NC_009488.1 1171956 1172918 R transposase and inactivated derivative complement(1171956..1172918) Orientia tsutsugamushi str. Boryong 5219787 YP_001248752.1 CDS trbC NC_009488.1 1175446 1175766 R conjugative transfer protein complement(1175446..1175766) Orientia tsutsugamushi str. Boryong 5219791 YP_001248753.1 CDS traV NC_009488.1 1176776 1177012 R conjugative transfer protein complement(1176776..1177012) Orientia tsutsugamushi str. Boryong 5219793 YP_001248754.1 CDS traB NC_009488.1 1177012 1177476 R conjugative pilus assembly protein complement(1177012..1177476) Orientia tsutsugamushi str. Boryong 5219794 YP_001248755.1 CDS tchB NC_009488.1 1177588 1177989 R hypothetical protein complement(1177588..1177989) Orientia tsutsugamushi str. Boryong 5219795 YP_001248756.1 CDS traE NC_009488.1 1177986 1178537 R conjugative transfer protein complement(1177986..1178537) Orientia tsutsugamushi str. Boryong 5219796 YP_001248757.1 CDS tchA NC_009488.1 1178537 1178872 R hypothetical protein complement(1178537..1178872) Orientia tsutsugamushi str. Boryong 5219797 YP_001248758.1 CDS int NC_009488.1 1178998 1180242 R phage-related integrase complement(1178998..1180242) Orientia tsutsugamushi str. Boryong 5219798 YP_001248759.1 CDS sco2 NC_009488.1 1180687 1181274 R electron transport protein complement(1180687..1181274) Orientia tsutsugamushi str. Boryong 5219799 YP_001248760.1 CDS traV NC_009488.1 1181474 1181602 R conjugative transfer protein complement(1181474..1181602) Orientia tsutsugamushi str. Boryong 5219800 YP_001248761.1 CDS dnaQ NC_009488.1 1187569 1188237 D DNA polymerase III epsilon chain 1187569..1188237 Orientia tsutsugamushi str. Boryong 5219807 YP_001248762.1 CDS carD NC_009488.1 1188457 1188966 D transcriptional factor regulator 1188457..1188966 Orientia tsutsugamushi str. Boryong 5219808 YP_001248763.1 CDS gcp NC_009488.1 1188990 1190024 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 1188990..1190024 Orientia tsutsugamushi str. Boryong 5219809 YP_001248764.1 CDS ppnK NC_009488.1 1190037 1190828 D inorganic polyphosphate/ATP-NAD kinase 1190037..1190828 Orientia tsutsugamushi str. Boryong 5219810 YP_001248765.1 CDS OTBS_1221 NC_009488.1 1190930 1192153 R hypothetical protein complement(1190930..1192153) Orientia tsutsugamushi str. Boryong 5219811 YP_001248766.1 CDS tolR NC_009488.1 1192140 1192598 R transport protein complement(1192140..1192598) Orientia tsutsugamushi str. Boryong 5219812 YP_001248767.1 CDS tolQ NC_009488.1 1192604 1193293 R transport protein complement(1192604..1193293) Orientia tsutsugamushi str. Boryong 5219813 YP_001248768.1 CDS hemB NC_009488.1 1193457 1194470 D catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1193457..1194470 Orientia tsutsugamushi str. Boryong 5219814 YP_001248769.1 CDS OTBS_1226 NC_009488.1 1195181 1197637 D hypothetical protein 1195181..1197637 Orientia tsutsugamushi str. Boryong 5219816 YP_001248770.1 CDS OTBS_1228 NC_009488.1 1199209 1201014 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1199209..1201014 Orientia tsutsugamushi str. Boryong 5219818 YP_001248771.1 CDS OTBS_1236 NC_009488.1 1207881 1208741 R hypothetical protein complement(1207881..1208741) Orientia tsutsugamushi str. Boryong 5219826 YP_001248772.1 CDS ssb NC_009488.1 1208820 1209287 R single-stranded DNA-binding protein complement(1208820..1209287) Orientia tsutsugamushi str. Boryong 5219827 YP_001248773.1 CDS OTBS_1239 NC_009488.1 1209651 1209980 R hypothetical protein complement(1209651..1209980) Orientia tsutsugamushi str. Boryong 5219829 YP_001248774.1 CDS ank1C10 NC_009488.1 1211723 1212280 R ankyrin repeat-containing protein complement(1211723..1212280) Orientia tsutsugamushi str. Boryong 5219831 YP_001248775.1 CDS greA NC_009488.1 1215705 1216184 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1215705..1216184 Orientia tsutsugamushi str. Boryong 5219836 YP_001248776.1 CDS rpoH NC_009488.1 1216231 1217130 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1216231..1217130 Orientia tsutsugamushi str. Boryong 5219837 YP_001248777.1 CDS OTBS_1250 NC_009488.1 1218094 1218648 R hypothetical protein complement(1218094..1218648) Orientia tsutsugamushi str. Boryong 5219840 YP_001248778.1 CDS OTBS_1251 NC_009488.1 1218910 1219107 D hypothetical protein 1218910..1219107 Orientia tsutsugamushi str. Boryong 5219841 YP_001248779.1 CDS traC NC_009488.1 1222433 1222801 R conjugative transfer protein complement(1222433..1222801) Orientia tsutsugamushi str. Boryong 5219845 YP_001248780.1 CDS traV NC_009488.1 1222782 1223111 R conjugative transfer protein complement(1222782..1223111) Orientia tsutsugamushi str. Boryong 5219846 YP_001248781.1 CDS traB NC_009488.1 1223111 1223575 R conjugative pilus assembly protein complement(1223111..1223575) Orientia tsutsugamushi str. Boryong 5219847 YP_001248782.1 CDS tchB NC_009488.1 1223687 1224088 R hypothetical protein complement(1223687..1224088) Orientia tsutsugamushi str. Boryong 5219848 YP_001248783.1 CDS tchA NC_009488.1 1224636 1224971 R hypothetical protein complement(1224636..1224971) Orientia tsutsugamushi str. Boryong 5219850 YP_001248784.1 CDS int NC_009488.1 1225097 1226341 R phage-related integrase complement(1225097..1226341) Orientia tsutsugamushi str. Boryong 5219851 YP_001248785.1 CDS rhp7 NC_009488.1 1226466 1226666 R hypothetical protein complement(1226466..1226666) Orientia tsutsugamushi str. Boryong 5219852 YP_001248786.1 CDS OTBS_1267 NC_009488.1 1229193 1230953 R hypothetical protein complement(1229193..1230953) Orientia tsutsugamushi str. Boryong 5219857 YP_001248787.1 CDS ntrX NC_009488.1 1231061 1232530 R Fis family transcriptional regulator complement(1231061..1232530) Orientia tsutsugamushi str. Boryong 5219858 YP_001248788.1 CDS ntrY NC_009488.1 1232671 1234257 R NtrY-like histidine kinase complement(1232671..1234257) Orientia tsutsugamushi str. Boryong 5219859 YP_001248789.1 CDS comEC/rec2 NC_009488.1 1234921 1236969 R ComEC/Rec2 family protein complement(1234921..1236969) Orientia tsutsugamushi str. Boryong 5219861 YP_001248790.1 CDS OTBS_1271 NC_009488.1 1237129 1237887 R hypothetical protein complement(1237129..1237887) Orientia tsutsugamushi str. Boryong 5219862 YP_001248791.1 CDS rhp6 NC_009488.1 1241728 1242231 D ompA-like autotransporter 1241728..1242231 Orientia tsutsugamushi str. Boryong 5219866 YP_001248792.1 CDS OTBS_1277 NC_009488.1 1243076 1243246 R hypothetical protein complement(1243076..1243246) Orientia tsutsugamushi str. Boryong 5219868 YP_001248793.1 CDS rhp5 NC_009488.1 1243875 1244240 D hypothetical protein 1243875..1244240 Orientia tsutsugamushi str. Boryong 5219869 YP_001248794.1 CDS OTBS_1279 NC_009488.1 1244599 1244853 D hypothetical protein 1244599..1244853 Orientia tsutsugamushi str. Boryong 5219870 YP_001248795.1 CDS hkp29 NC_009488.1 1244903 1246201 D signal transduction histidine kinase 1244903..1246201 Orientia tsutsugamushi str. Boryong 5219871 YP_001248796.1 CDS traD_Ti NC_009488.1 1248761 1249216 R conjugative transfer protein complement(1248761..1249216) Orientia tsutsugamushi str. Boryong 5219874 YP_001248797.1 CDS OTBS_1284 NC_009488.1 1249218 1249418 R hypothetical protein complement(1249218..1249418) Orientia tsutsugamushi str. Boryong 5219875 YP_001248798.1 CDS traD_F NC_009488.1 1254898 1255854 R conjugative transfer protein complement(1254898..1255854) Orientia tsutsugamushi str. Boryong 5219878 YP_001248799.1 CDS traN NC_009488.1 1258178 1259839 R conjugative transfer protein complement(1258178..1259839) Orientia tsutsugamushi str. Boryong 5217666 YP_001248800.1 CDS trbC NC_009488.1 1259862 1260182 R conjugative transfer protein complement(1259862..1260182) Orientia tsutsugamushi str. Boryong 5217667 YP_001248801.1 CDS tchE NC_009488.1 1261260 1261448 R hypothetical protein complement(1261260..1261448) Orientia tsutsugamushi str. Boryong 5217669 YP_001248802.1 CDS traW NC_009488.1 1261531 1262190 R conjugative transfer protein complement(1261531..1262190) Orientia tsutsugamushi str. Boryong 5217670 YP_001248803.1 CDS dam16 NC_009488.1 1265230 1265370 D site-specific DNA adenine methylase 1265230..1265370 Orientia tsutsugamushi str. Boryong 5217672 YP_001248804.1 CDS tchA NC_009488.1 1266054 1266389 R hypothetical protein complement(1266054..1266389) Orientia tsutsugamushi str. Boryong 5217674 YP_001248805.1 CDS tnD NC_009488.1 1270919 1271839 D transposase and inactivated derivative 1270919..1271839 Orientia tsutsugamushi str. Boryong 5217679 YP_001248806.1 CDS OTBS_1306 NC_009488.1 1273081 1273650 D hypothetical protein 1273081..1273650 Orientia tsutsugamushi str. Boryong 5217681 YP_001248807.1 CDS gpsA NC_009488.1 1273903 1274895 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1273903..1274895) Orientia tsutsugamushi str. Boryong 5217683 YP_001248808.1 CDS miaB NC_009488.1 1274958 1276229 R MiaB-like tRNA modifying enzyme complement(1274958..1276229) Orientia tsutsugamushi str. Boryong 5217684 YP_001248809.1 CDS OTBS_1311 NC_009488.1 1277748 1278356 R hypothetical protein complement(1277748..1278356) Orientia tsutsugamushi str. Boryong 5217687 YP_001248810.1 CDS OTBS_1312 NC_009488.1 1278672 1279598 D hypothetical protein 1278672..1279598 Orientia tsutsugamushi str. Boryong 5217688 YP_001248811.1 CDS maeA NC_009488.1 1279591 1280919 D NADP-dependent malic enzyme 1279591..1280919 Orientia tsutsugamushi str. Boryong 5217689 YP_001248812.1 CDS OTBS_1317 NC_009488.1 1282498 1282914 R hypothetical protein complement(1282498..1282914) Orientia tsutsugamushi str. Boryong 5217693 YP_001248813.1 CDS dam17 NC_009488.1 1283281 1284090 D site-specific DNA adenine methylase 1283281..1284090 Orientia tsutsugamushi str. Boryong 5217694 YP_001248814.1 CDS rhp6 NC_009488.1 1284094 1284603 R ompA-like autotransporter complement(1284094..1284603) Orientia tsutsugamushi str. Boryong 5217695 YP_001248815.1 CDS hkp30 NC_009488.1 1286228 1286689 D signal transduction histidine kinase 1286228..1286689 Orientia tsutsugamushi str. Boryong 5217698 YP_001248816.1 CDS traD_Ti NC_009488.1 1288961 1289359 R conjugative transfer protein complement(1288961..1289359) Orientia tsutsugamushi str. Boryong 5217701 YP_001248817.1 CDS trbC NC_009488.1 1298734 1299054 R conjugative transfer protein complement(1298734..1299054) Orientia tsutsugamushi str. Boryong 5217707 YP_001248818.1 CDS traV NC_009488.1 1300011 1300301 R conjugative transfer protein complement(1300011..1300301) Orientia tsutsugamushi str. Boryong 5217709 YP_001248819.1 CDS traB NC_009488.1 1300301 1300765 R conjugative pilus assembly protein complement(1300301..1300765) Orientia tsutsugamushi str. Boryong 5217710 YP_001248820.1 CDS tchB NC_009488.1 1300877 1301278 R hypothetical protein complement(1300877..1301278) Orientia tsutsugamushi str. Boryong 5217711 YP_001248821.1 CDS traE NC_009488.1 1301275 1301826 R conjugative transfer protein complement(1301275..1301826) Orientia tsutsugamushi str. Boryong 5217712 YP_001248822.1 CDS tchA NC_009488.1 1301826 1302161 R hypothetical protein complement(1301826..1302161) Orientia tsutsugamushi str. Boryong 5217713 YP_001248823.1 CDS int NC_009488.1 1302287 1303531 R phage-related integrase complement(1302287..1303531) Orientia tsutsugamushi str. Boryong 5217714 YP_001248824.1 CDS rhp7 NC_009488.1 1303656 1303856 R hypothetical protein complement(1303656..1303856) Orientia tsutsugamushi str. Boryong 5217715 YP_001248825.1 CDS rhp9 NC_009488.1 1304309 1304725 D hypothetical protein 1304309..1304725 Orientia tsutsugamushi str. Boryong 5217716 YP_001248826.1 CDS rhp9 NC_009488.1 1306423 1306713 D hypothetical protein 1306423..1306713 Orientia tsutsugamushi str. Boryong 5217718 YP_001248827.1 CDS mreC NC_009488.1 1307956 1308807 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1307956..1308807) Orientia tsutsugamushi str. Boryong 5217720 YP_001248828.1 CDS mreB NC_009488.1 1308814 1309881 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1308814..1309881) Orientia tsutsugamushi str. Boryong 5217721 YP_001248829.1 CDS sucB NC_009488.1 1309982 1310212 R dihydrolipoamide acetyltransferase component complement(1309982..1310212) Orientia tsutsugamushi str. Boryong 5217722 YP_001248830.1 CDS OTBS_1347 NC_009488.1 1310182 1310802 R hypothetical protein complement(1310182..1310802) Orientia tsutsugamushi str. Boryong 5217723 YP_001248831.1 CDS clpP NC_009488.1 1312937 1313557 R ATP-dependent protease proteolytic subunit complement(1312937..1313557) Orientia tsutsugamushi str. Boryong 5217726 YP_001248832.1 CDS map NC_009488.1 1316094 1316888 R methionine aminopeptidase complement(1316094..1316888) Orientia tsutsugamushi str. Boryong 5217730 YP_001248833.1 CDS czcR NC_009488.1 1324959 1325696 D CzcR-like response regulator 1324959..1325696 Orientia tsutsugamushi str. Boryong 5217741 YP_001248834.1 CDS OTBS_1365 NC_009488.1 1325832 1327568 D metallo-beta-lactamase 1325832..1327568 Orientia tsutsugamushi str. Boryong 5217742 YP_001248835.1 CDS gatC NC_009488.1 1327651 1327950 D glutamyl-tRNA(Gln) amidotransferase subunit C 1327651..1327950 Orientia tsutsugamushi str. Boryong 5217743 YP_001248836.1 CDS gatA NC_009488.1 1327950 1329428 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1327950..1329428 Orientia tsutsugamushi str. Boryong 5217744 YP_001248837.1 CDS gatB NC_009488.1 1329431 1330891 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1329431..1330891 Orientia tsutsugamushi str. Boryong 5217745 YP_001248838.1 CDS OTBS_1372 NC_009488.1 1335617 1336312 D hypothetical protein 1335617..1336312 Orientia tsutsugamushi str. Boryong 5217749 YP_001248839.1 CDS OTBS_1376 NC_009488.1 1339446 1340840 D hypothetical protein 1339446..1340840 Orientia tsutsugamushi str. Boryong 5217753 YP_001248840.1 CDS OTBS_1379 NC_009488.1 1341886 1345143 D Na+/proline symporter 1341886..1345143 Orientia tsutsugamushi str. Boryong 5217756 YP_001248841.1 CDS ccmA NC_009488.1 1353712 1354317 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 1353712..1354317 Orientia tsutsugamushi str. Boryong 5217769 YP_001248842.1 CDS ccmB NC_009488.1 1354314 1354964 D heme exporter protein B 1354314..1354964 Orientia tsutsugamushi str. Boryong 5217770 YP_001248843.1 CDS OTBS_1395 NC_009488.1 1355118 1356257 D hypothetical protein 1355118..1356257 Orientia tsutsugamushi str. Boryong 5217772 YP_001248844.1 CDS petA NC_009488.1 1356342 1357034 D ubiquinol-cytochrome c reductase, iron-sulfur subunit 1356342..1357034 Orientia tsutsugamushi str. Boryong 5217773 YP_001248845.1 CDS petB NC_009488.1 1357189 1358385 D ubiquinol-cytochrome c reductase, cytochrome b 1357189..1358385 Orientia tsutsugamushi str. Boryong 5217774 YP_001248846.1 CDS OTBS_1399 NC_009488.1 1358798 1358947 R hypothetical protein complement(1358798..1358947) Orientia tsutsugamushi str. Boryong 5217776 YP_001248847.1 CDS rhp2 NC_009488.1 1360018 1362366 D hypothetical protein 1360018..1362366 Orientia tsutsugamushi str. Boryong 5217779 YP_001248848.1 CDS OTBS_1407 NC_009488.1 1365398 1365538 R hypothetical protein complement(1365398..1365538) Orientia tsutsugamushi str. Boryong 5217784 YP_001248849.1 CDS OTBS_1408 NC_009488.1 1365614 1366420 R uracil-DNA glycosylase complement(1365614..1366420) Orientia tsutsugamushi str. Boryong 5217785 YP_001248850.1 CDS int NC_009488.1 1368394 1369638 D phage-related integrase 1368394..1369638 Orientia tsutsugamushi str. Boryong 5217787 YP_001248851.1 CDS argB NC_009488.1 1372234 1373175 R acetylglutamate kinase complement(1372234..1373175) Orientia tsutsugamushi str. Boryong 5217791 YP_001248852.1 CDS engB NC_009488.1 1373123 1373683 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1373123..1373683) Orientia tsutsugamushi str. Boryong 5217792 YP_001248853.1 CDS yidC NC_009488.1 1373743 1375446 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC complement(1373743..1375446) Orientia tsutsugamushi str. Boryong 5217793 YP_001248854.1 CDS atrC1 NC_009488.1 1377193 1378611 R cationic amino acid transporter-1 complement(1377193..1378611) Orientia tsutsugamushi str. Boryong 5217795 YP_001248855.1 CDS OTBS_1418 NC_009488.1 1379020 1379427 D hypothetical protein 1379020..1379427 Orientia tsutsugamushi str. Boryong 5217796 YP_001248856.1 CDS gyrB NC_009488.1 1379457 1381880 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(1379457..1381880) Orientia tsutsugamushi str. Boryong 5217797 YP_001248857.1 CDS OTBS_1420 NC_009488.1 1381997 1382857 D HAD family hydrolase 1381997..1382857 Orientia tsutsugamushi str. Boryong 5217798 YP_001248858.1 CDS mnhG NC_009488.1 1383420 1383749 D multisubunit Na+/H+ antiporter, MnhG subunit 1383420..1383749 Orientia tsutsugamushi str. Boryong 5217800 YP_001248859.1 CDS mbhE NC_009488.1 1383746 1384336 D multisubunit Na+/H+ antiporter, membrane bound hydrogenase, MbhE subunit 1383746..1384336 Orientia tsutsugamushi str. Boryong 5217801 YP_001248860.1 CDS mnhB NC_009488.1 1384357 1384791 D multisubunit Na+/H+ antiporter, MnhB subunit 1384357..1384791 Orientia tsutsugamushi str. Boryong 5217802 YP_001248861.1 CDS mnhC NC_009488.1 1384769 1385170 D multisubunit Na+/H+ antiporter, MnhC subunit 1384769..1385170 Orientia tsutsugamushi str. Boryong 5217803 YP_001248862.1 CDS nuoN2 NC_009488.1 1385163 1386653 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; monovalent cation/H+ antiporter subunit D 1385163..1386653 Orientia tsutsugamushi str. Boryong 5217804 YP_001248863.1 CDS nuoL2 NC_009488.1 1386663 1388135 D NADH dehydrogenase I chain L 1386663..1388135 Orientia tsutsugamushi str. Boryong 5217805 YP_001248864.1 CDS dam21 NC_009488.1 1391245 1391685 D site-specific DNA adenine methylase 1391245..1391685 Orientia tsutsugamushi str. Boryong 5217811 YP_001248865.1 CDS ank2A7 NC_009488.1 1391975 1394113 R ankyrin repeat-containing protein complement(1391975..1394113) Orientia tsutsugamushi str. Boryong 5217812 YP_001248866.1 CDS tchA NC_009488.1 1398553 1398888 D hypothetical protein 1398553..1398888 Orientia tsutsugamushi str. Boryong 5217815 YP_001248867.1 CDS tchB NC_009488.1 1399437 1399838 D hypothetical protein 1399437..1399838 Orientia tsutsugamushi str. Boryong 5217817 YP_001248868.1 CDS traB NC_009488.1 1399950 1400414 D conjugative pilus assembly protein 1399950..1400414 Orientia tsutsugamushi str. Boryong 5217818 YP_001248869.1 CDS traV NC_009488.1 1400414 1400704 D conjugative transfer protein 1400414..1400704 Orientia tsutsugamushi str. Boryong 5217819 YP_001248870.1 CDS trbC NC_009488.1 1401661 1401981 D conjugative transfer protein 1401661..1401981 Orientia tsutsugamushi str. Boryong 5217821 YP_001248871.1 CDS traF NC_009488.1 1403675 1404379 D conjugative pilus assembly protein 1403675..1404379 Orientia tsutsugamushi str. Boryong 5217823 YP_001248872.1 CDS traD_F NC_009488.1 1405801 1406946 D conjugative transfer protein 1405801..1406946 Orientia tsutsugamushi str. Boryong 5217826 YP_001248873.1 CDS tnE NC_009488.1 1406948 1407859 R transposase and inactivated derivative complement(1406948..1407859) Orientia tsutsugamushi str. Boryong 5217827 YP_001248874.1 CDS traD_Ti NC_009488.1 1412723 1413121 D conjugative transfer protein 1412723..1413121 Orientia tsutsugamushi str. Boryong 5217829 YP_001248875.1 CDS rhp4 NC_009488.1 1413209 1413787 D hypothetical protein 1413209..1413787 Orientia tsutsugamushi str. Boryong 5217830 YP_001248876.1 CDS spoT31 NC_009488.1 1413865 1414440 R spoT-like ppGpp hydrolase complement(1413865..1414440) Orientia tsutsugamushi str. Boryong 5217831 YP_001248877.1 CDS hkp31 NC_009488.1 1414541 1416142 R signal transduction histidine kinase complement(1414541..1416142) Orientia tsutsugamushi str. Boryong 5217832 YP_001248878.1 CDS OTBS_1456 NC_009488.1 1417306 1419174 D hypothetical protein 1417306..1419174 Orientia tsutsugamushi str. Boryong 5217835 YP_001248879.1 CDS rhp5 NC_009488.1 1419418 1419594 R hypothetical protein complement(1419418..1419594) Orientia tsutsugamushi str. Boryong 5217836 YP_001248880.1 CDS rhp6 NC_009488.1 1420960 1421463 R ompA-like autotransporter complement(1420960..1421463) Orientia tsutsugamushi str. Boryong 5217838 YP_001248881.1 CDS OTBS_1463 NC_009488.1 1425096 1425314 R hypothetical protein complement(1425096..1425314) Orientia tsutsugamushi str. Boryong 5217842 YP_001248882.1 CDS OTBS_1467 NC_009488.1 1428462 1429820 R hypothetical protein complement(1428462..1429820) Orientia tsutsugamushi str. Boryong 5217846 YP_001248883.1 CDS OTBS_1468 NC_009488.1 1429874 1430554 R hypothetical protein complement(1429874..1430554) Orientia tsutsugamushi str. Boryong 5217847 YP_001248884.1 CDS traD_F NC_009488.1 1433607 1434488 R conjugative transfer protein complement(1433607..1434488) Orientia tsutsugamushi str. Boryong 5217852 YP_001248885.1 CDS traN NC_009488.1 1436620 1438281 R conjugative transfer protein complement(1436620..1438281) Orientia tsutsugamushi str. Boryong 5217856 YP_001248886.1 CDS trbC NC_009488.1 1438304 1438624 R conjugative transfer protein complement(1438304..1438624) Orientia tsutsugamushi str. Boryong 5217857 YP_001248887.1 CDS tchE NC_009488.1 1439702 1439890 R hypothetical protein complement(1439702..1439890) Orientia tsutsugamushi str. Boryong 5217859 YP_001248888.1 CDS traW NC_009488.1 1439973 1440632 R conjugative transfer protein complement(1439973..1440632) Orientia tsutsugamushi str. Boryong 5217860 YP_001248889.1 CDS ccmF NC_009488.1 1444619 1446505 R cytochrome c-type biogenesis complement(1444619..1446505) Orientia tsutsugamushi str. Boryong 5217865 YP_001248890.1 CDS corB NC_009488.1 1446495 1447763 R Mg2+/Co2+ transporter complement(1446495..1447763) Orientia tsutsugamushi str. Boryong 5217866 YP_001248891.1 CDS sodB NC_009488.1 1449292 1449933 D superoxide dismutase 1449292..1449933 Orientia tsutsugamushi str. Boryong 5217868 YP_001248892.1 CDS sucA NC_009488.1 1449974 1452865 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1449974..1452865 Orientia tsutsugamushi str. Boryong 5217869 YP_001248893.1 CDS sucB NC_009488.1 1452865 1454142 D 2-oxoglutarate dehydrogenase E2 1452865..1454142 Orientia tsutsugamushi str. Boryong 5217870 YP_001248894.1 CDS OTBS_1492 NC_009488.1 1454148 1455626 D hypothetical protein 1454148..1455626 Orientia tsutsugamushi str. Boryong 5217871 YP_001248895.1 CDS proP NC_009488.1 1455919 1457220 D proline/betaine transporter 1455919..1457220 Orientia tsutsugamushi str. Boryong 5217872 YP_001248896.1 CDS OTBS_1494 NC_009488.1 1457378 1457626 D hypothetical protein 1457378..1457626 Orientia tsutsugamushi str. Boryong 5217873 YP_001248897.1 CDS coxC NC_009488.1 1458094 1458918 R cytochrome c oxidase subunit III complement(1458094..1458918) Orientia tsutsugamushi str. Boryong 5217874 YP_001248898.1 CDS ruvB NC_009488.1 1459100 1460077 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1459100..1460077) Orientia tsutsugamushi str. Boryong 5217875 YP_001248899.1 CDS ruvA NC_009488.1 1460077 1460694 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1460077..1460694) Orientia tsutsugamushi str. Boryong 5217876 YP_001248900.1 CDS OTBS_1498 NC_009488.1 1460939 1463080 R hypothetical protein complement(1460939..1463080) Orientia tsutsugamushi str. Boryong 5217877 YP_001248901.1 CDS bcr NC_009488.1 1463464 1464663 R Bcr/CflA subfamily drug resistance transporter complement(1463464..1464663) Orientia tsutsugamushi str. Boryong 5217878 YP_001248902.1 CDS OTBS_1503 NC_009488.1 1466525 1469962 D Na+/proline symporter 1466525..1469962 Orientia tsutsugamushi str. Boryong 5217882 YP_001248903.1 CDS rhp7 NC_009488.1 1470261 1470461 D hypothetical protein 1470261..1470461 Orientia tsutsugamushi str. Boryong 5217884 YP_001248904.1 CDS int NC_009488.1 1470586 1471830 D phage-related integrase 1470586..1471830 Orientia tsutsugamushi str. Boryong 5217885 YP_001248905.1 CDS tchA NC_009488.1 1471956 1472291 D hypothetical protein 1471956..1472291 Orientia tsutsugamushi str. Boryong 5217886 YP_001248906.1 CDS traE NC_009488.1 1472291 1472842 D conjugative transfer protein 1472291..1472842 Orientia tsutsugamushi str. Boryong 5217887 YP_001248907.1 CDS tchB NC_009488.1 1472839 1473240 D hypothetical protein 1472839..1473240 Orientia tsutsugamushi str. Boryong 5217888 YP_001248908.1 CDS traB NC_009488.1 1473391 1473816 D conjugative pilus assembly protein 1473391..1473816 Orientia tsutsugamushi str. Boryong 5217889 YP_001248909.1 CDS traV NC_009488.1 1473816 1474106 D conjugative transfer protein 1473816..1474106 Orientia tsutsugamushi str. Boryong 5217890 YP_001248910.1 CDS trbC NC_009488.1 1475063 1475383 D conjugative transfer protein 1475063..1475383 Orientia tsutsugamushi str. Boryong 5217892 YP_001248911.1 CDS traD_F NC_009488.1 1479205 1480350 D conjugative transfer protein 1479205..1480350 Orientia tsutsugamushi str. Boryong 5217897 YP_001248912.1 CDS tnE NC_009488.1 1480352 1481263 R transposase and inactivated derivative complement(1480352..1481263) Orientia tsutsugamushi str. Boryong 5217898 YP_001248913.1 CDS ank1A2 NC_009488.1 1482584 1484236 D ankyrin repeat-containing protein 1482584..1484236 Orientia tsutsugamushi str. Boryong 5217900 YP_001248914.1 CDS traD_Ti NC_009488.1 1487505 1487903 D conjugative transfer protein 1487505..1487903 Orientia tsutsugamushi str. Boryong 5217902 YP_001248915.1 CDS OTBS_1524 NC_009488.1 1487853 1488098 R hypothetical protein complement(1487853..1488098) Orientia tsutsugamushi str. Boryong 5217903 YP_001248916.1 CDS lipB NC_009488.1 1491108 1491734 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1491108..1491734) Orientia tsutsugamushi str. Boryong 5217906 YP_001248917.1 CDS murD NC_009488.1 1491817 1493235 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1491817..1493235 Orientia tsutsugamushi str. Boryong 5217907 YP_001248918.1 CDS ftsW NC_009488.1 1493242 1494369 D cell division protein 1493242..1494369 Orientia tsutsugamushi str. Boryong 5217908 YP_001248919.1 CDS murG NC_009488.1 1494373 1495452 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1494373..1495452 Orientia tsutsugamushi str. Boryong 5217909 YP_001248920.1 CDS lysC NC_009488.1 1498589 1499803 R aspartate kinase complement(1498589..1499803) Orientia tsutsugamushi str. Boryong 5217916 YP_001248921.1 CDS OTBS_1538 NC_009488.1 1500084 1500581 R hypothetical protein complement(1500084..1500581) Orientia tsutsugamushi str. Boryong 5217917 YP_001248922.1 CDS kefB NC_009488.1 1500562 1502304 R glutathione-regulated potassium-efflux system protein complement(1500562..1502304) Orientia tsutsugamushi str. Boryong 5217918 YP_001248923.1 CDS ygfA NC_009488.1 1502477 1503049 D 5-formyltetrahydrofolate cyclo-ligase 1502477..1503049 Orientia tsutsugamushi str. Boryong 5217919 YP_001248924.1 CDS OTBS_1541 NC_009488.1 1503046 1503657 D hypothetical protein 1503046..1503657 Orientia tsutsugamushi str. Boryong 5217920 YP_001248925.1 CDS OTBS_1545 NC_009488.1 1505209 1507800 D hypothetical protein 1505209..1507800 Orientia tsutsugamushi str. Boryong 5217924 YP_001248926.1 CDS OTBS_1546 NC_009488.1 1507835 1510324 D hypothetical protein 1507835..1510324 Orientia tsutsugamushi str. Boryong 5217925 YP_001248927.1 CDS rhp7 NC_009488.1 1513010 1513210 R hypothetical protein complement(1513010..1513210) Orientia tsutsugamushi str. Boryong 5217930 YP_001248928.1 CDS rne NC_009488.1 1514646 1516673 R ribonuclease E complement(1514646..1516673) Orientia tsutsugamushi str. Boryong 5217936 YP_001248929.1 CDS spoT33 NC_009488.1 1517444 1521610 D spoT-like ppGpp synthetase 1517444..1521610 Orientia tsutsugamushi str. Boryong 5217937 YP_001248930.1 CDS rhp2 NC_009488.1 1522052 1524043 D hypothetical protein 1522052..1524043 Orientia tsutsugamushi str. Boryong 5217938 YP_001248931.1 CDS OTBS_1561 NC_009488.1 1526234 1527127 R hypothetical protein complement(1526234..1527127) Orientia tsutsugamushi str. Boryong 5217940 YP_001248932.1 CDS ubiB NC_009488.1 1528128 1529507 R ubiquinone biosynthesis protein, 2-polyprenylphenol 6-hydroxylase complement(1528128..1529507) Orientia tsutsugamushi str. Boryong 5217942 YP_001248933.1 CDS OTBS_1564 NC_009488.1 1528144 1528311 D hypothetical protein 1528144..1528311 Orientia tsutsugamushi str. Boryong 5217943 YP_001248934.1 CDS ubiE NC_009488.1 1529504 1530277 R ubiquinone/menaquinone biosynthesis methlytransferase complement(1529504..1530277) Orientia tsutsugamushi str. Boryong 5217944 YP_001248935.1 CDS yhbC NC_009488.1 1530871 1531353 D hypothetical protein 1530871..1531353 Orientia tsutsugamushi str. Boryong 5217945 YP_001248936.1 CDS nusA NC_009488.1 1531369 1532871 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1531369..1532871 Orientia tsutsugamushi str. Boryong 5217946 YP_001248937.1 CDS infB NC_009488.1 1533118 1535664 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1533118..1535664 Orientia tsutsugamushi str. Boryong 5217947 YP_001248938.1 CDS rbfA NC_009488.1 1535695 1536057 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1535695..1536057 Orientia tsutsugamushi str. Boryong 5217948 YP_001248939.1 CDS glnA NC_009488.1 1539922 1540773 R glutamine synthetase complement(1539922..1540773) Orientia tsutsugamushi str. Boryong 5217954 YP_001248940.1 CDS OTBS_1576 NC_009488.1 1540751 1541482 D hypothetical protein 1540751..1541482 Orientia tsutsugamushi str. Boryong 5217955 YP_001248941.1 CDS ccmC NC_009488.1 1541475 1542185 D heme exporter protein C 1541475..1542185 Orientia tsutsugamushi str. Boryong 5217956 YP_001248942.1 CDS fdxA NC_009488.1 1542191 1542511 D ferredoxin 1542191..1542511 Orientia tsutsugamushi str. Boryong 5217957 YP_001248943.1 CDS dsbA NC_009488.1 1542647 1543471 D thiol:disulfide interchange protein 1542647..1543471 Orientia tsutsugamushi str. Boryong 5217958 YP_001248944.1 CDS OTBS_1581 NC_009488.1 1543600 1544127 D hypothetical protein 1543600..1544127 Orientia tsutsugamushi str. Boryong 5217960 YP_001248945.1 CDS rnhA NC_009488.1 1544127 1544633 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1544127..1544633 Orientia tsutsugamushi str. Boryong 5217961 YP_001248946.1 CDS OTBS_1583 NC_009488.1 1544605 1544967 D check-maybe an arthopod gene; NADH ubiquinone oxidoreductase 17.2 kD subunit 1544605..1544967 Orientia tsutsugamushi str. Boryong 5217962 YP_001248947.1 CDS OTBS_1584 NC_009488.1 1544972 1545457 D ABC transporter substrate binding protein 1544972..1545457 Orientia tsutsugamushi str. Boryong 5217963 YP_001248948.1 CDS hisS NC_009488.1 1545460 1546731 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1545460..1546731 Orientia tsutsugamushi str. Boryong 5217964 YP_001248949.1 CDS nusB NC_009488.1 1546743 1547231 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1546743..1547231 Orientia tsutsugamushi str. Boryong 5217965 YP_001248950.1 CDS gst NC_009488.1 1548216 1548884 R glutathione S-transferase complement(1548216..1548884) Orientia tsutsugamushi str. Boryong 5217968 YP_001248951.1 CDS spoT34 NC_009488.1 1549975 1550535 D spoT-like ppGpp hydrolase 1549975..1550535 Orientia tsutsugamushi str. Boryong 5217971 YP_001248952.1 CDS rhp4 NC_009488.1 1550613 1551182 R hypothetical protein complement(1550613..1551182) Orientia tsutsugamushi str. Boryong 5217972 YP_001248953.1 CDS traD_Ti NC_009488.1 1551279 1551677 R conjugative transfer protein complement(1551279..1551677) Orientia tsutsugamushi str. Boryong 5217973 YP_001248954.1 CDS OTBS_1598 NC_009488.1 1553379 1553537 R hypothetical protein complement(1553379..1553537) Orientia tsutsugamushi str. Boryong 5217977 YP_001248955.1 CDS rhp5 NC_009488.1 1553993 1554709 R hypothetical protein complement(1553993..1554709) Orientia tsutsugamushi str. Boryong 5217979 YP_001248956.1 CDS OTBS_1601 NC_009488.1 1554986 1555156 D hypothetical protein 1554986..1555156 Orientia tsutsugamushi str. Boryong 5217980 YP_001248957.1 CDS dam23 NC_009488.1 1555184 1555990 D site-specific DNA adenine methylase 1555184..1555990 Orientia tsutsugamushi str. Boryong 5217981 YP_001248958.1 CDS ank2A8 NC_009488.1 1556280 1558448 R ankyrin repeat-containing protein complement(1556280..1558448) Orientia tsutsugamushi str. Boryong 5217982 YP_001248959.1 CDS OTBS_1607 NC_009488.1 1563112 1564623 R Mg chelatase-related protein complement(1563112..1564623) Orientia tsutsugamushi str. Boryong 5217986 YP_001248960.1 CDS OTBS_1611 NC_009488.1 1565766 1566149 R hypothetical protein complement(1565766..1566149) Orientia tsutsugamushi str. Boryong 5217990 YP_001248961.1 CDS OTBS_1613 NC_009488.1 1568544 1569515 R hypothetical protein complement(1568544..1569515) Orientia tsutsugamushi str. Boryong 5217992 YP_001248962.1 CDS ftsZ NC_009488.1 1569598 1570959 R cell division protein ftsZ complement(1569598..1570959) Orientia tsutsugamushi str. Boryong 5217993 YP_001248963.1 CDS murA NC_009488.1 1571165 1572430 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1571165..1572430) Orientia tsutsugamushi str. Boryong 5217994 YP_001248964.1 CDS OTBS_1617 NC_009488.1 1573374 1574075 D hypthetical protein 1573374..1574075 Orientia tsutsugamushi str. Boryong 5217996 YP_001248965.1 CDS OTBS_1619 NC_009488.1 1576020 1576214 D hypothetical protein 1576020..1576214 Orientia tsutsugamushi str. Boryong 5217999 YP_001248966.1 CDS rbn NC_009488.1 1576173 1577018 R ribonuclease BN complement(1576173..1577018) Orientia tsutsugamushi str. Boryong 5218000 YP_001248967.1 CDS OTBS_1624 NC_009488.1 1578738 1578869 D hypothetical protein 1578738..1578869 Orientia tsutsugamushi str. Boryong 5218004 YP_001248968.1 CDS OTBS_1626 NC_009488.1 1579644 1579874 R hypothetical protein complement(1579644..1579874) Orientia tsutsugamushi str. Boryong 5218006 YP_001248969.1 CDS nuoA NC_009488.1 1580080 1580451 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1580080..1580451 Orientia tsutsugamushi str. Boryong 5218007 YP_001248970.1 CDS nuoB NC_009488.1 1580464 1580979 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1580464..1580979 Orientia tsutsugamushi str. Boryong 5218008 YP_001248971.1 CDS nuoC NC_009488.1 1580990 1581577 D NADH dehydrogenase I chain C 1580990..1581577 Orientia tsutsugamushi str. Boryong 5218009 YP_001248972.1 CDS nuoD NC_009488.1 1581603 1582793 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1581603..1582793 Orientia tsutsugamushi str. Boryong 5218010 YP_001248973.1 CDS nuoE NC_009488.1 1582790 1583368 D NADH dehydrogenase I chain E 1582790..1583368 Orientia tsutsugamushi str. Boryong 5218011 YP_001248974.1 CDS nuoF NC_009488.1 1583362 1584630 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1583362..1584630 Orientia tsutsugamushi str. Boryong 5218012 YP_001248975.1 CDS OTBS_1633 NC_009488.1 1585034 1585747 R hypothetical protein complement(1585034..1585747) Orientia tsutsugamushi str. Boryong 5218013 YP_001248976.1 CDS tlc NC_009488.1 1586874 1588373 D ADP/ATP carrier protein 1586874..1588373 Orientia tsutsugamushi str. Boryong 5218016 YP_001248977.1 CDS ruvC NC_009488.1 1589521 1590036 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1589521..1590036 Orientia tsutsugamushi str. Boryong 5218018 YP_001248978.1 CDS duS NC_009488.1 1590092 1591060 D tRNA-dihydrouridine synthase 1590092..1591060 Orientia tsutsugamushi str. Boryong 5218019 YP_001248979.1 CDS OTBS_1640 NC_009488.1 1591089 1591427 R hypothetical protein complement(1591089..1591427) Orientia tsutsugamushi str. Boryong 5218020 YP_001248980.1 CDS ubiG NC_009488.1 1591589 1592329 D ubiquinone biosynthesis O-methyltransferase 1591589..1592329 Orientia tsutsugamushi str. Boryong 5218021 YP_001248981.1 CDS truA NC_009488.1 1593184 1594038 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1593184..1594038) Orientia tsutsugamushi str. Boryong 5218023 YP_001248982.1 CDS rplM NC_009488.1 1594180 1594662 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1594180..1594662 Orientia tsutsugamushi str. Boryong 5218024 YP_001248983.1 CDS rpsI NC_009488.1 1594666 1595157 D 30S ribosomal protein S9 1594666..1595157 Orientia tsutsugamushi str. Boryong 5218025 YP_001248984.1 CDS OTBS_1646 NC_009488.1 1595487 1596233 D hypothetical protein 1595487..1596233 Orientia tsutsugamushi str. Boryong 5218027 YP_001248985.1 CDS ank2A9 NC_009488.1 1602390 1604540 D ankyrin repeat-containing protein 1602390..1604540 Orientia tsutsugamushi str. Boryong 5218036 YP_001248986.1 CDS dam25 NC_009488.1 1604830 1605636 R site-specific DNA adenine methylase complement(1604830..1605636) Orientia tsutsugamushi str. Boryong 5218037 YP_001248987.1 CDS OTBS_1657 NC_009488.1 1606354 1606608 D hypothetical protein 1606354..1606608 Orientia tsutsugamushi str. Boryong 5218038 YP_001248988.1 CDS hkp33 NC_009488.1 1606658 1607956 D signal transduction histidine kinase 1606658..1607956 Orientia tsutsugamushi str. Boryong 5218039 YP_001248989.1 CDS spoT35 NC_009488.1 1608090 1608665 D spoT-like ppGpp hydrolase 1608090..1608665 Orientia tsutsugamushi str. Boryong 5218040 YP_001248990.1 CDS xth1 NC_009488.1 1611638 1612423 D exodeoxyribonuclease III 1611638..1612423 Orientia tsutsugamushi str. Boryong 5218043 YP_001248991.1 CDS traD_Ti NC_009488.1 1612465 1612863 R conjugative transfer protein complement(1612465..1612863) Orientia tsutsugamushi str. Boryong 5218044 YP_001248992.1 CDS tpr1B16 NC_009488.1 1619283 1620257 R hypothetical protein complement(1619283..1620257) Orientia tsutsugamushi str. Boryong 5218047 YP_001248993.1 CDS trbC NC_009488.1 1622236 1622556 R conjugative transfer protein complement(1622236..1622556) Orientia tsutsugamushi str. Boryong 5218050 YP_001248994.1 CDS traV NC_009488.1 1623513 1623803 R conjugative transfer protein complement(1623513..1623803) Orientia tsutsugamushi str. Boryong 5218052 YP_001248995.1 CDS tchB NC_009488.1 1624379 1624780 R hypothetical protein complement(1624379..1624780) Orientia tsutsugamushi str. Boryong 5218054 YP_001248996.1 CDS traE NC_009488.1 1624777 1625328 R conjugative transfer protein complement(1624777..1625328) Orientia tsutsugamushi str. Boryong 5218055 YP_001248997.1 CDS tchA NC_009488.1 1625328 1625663 R hypothetical protein complement(1625328..1625663) Orientia tsutsugamushi str. Boryong 5218056 YP_001248998.1 CDS int NC_009488.1 1625789 1626532 R phage-related integrase complement(1625789..1626532) Orientia tsutsugamushi str. Boryong 5218057 YP_001248999.1 CDS ank1B3 NC_009488.1 1628200 1629372 D ankyrin repeat-containing protein 1628200..1629372 Orientia tsutsugamushi str. Boryong 5218060 YP_001249000.1 CDS OTBS_1682 NC_009488.1 1633156 1634943 D hypothetical protein 1633156..1634943 Orientia tsutsugamushi str. Boryong 5218063 YP_001249001.1 CDS OTBS_1683 NC_009488.1 1635074 1636264 D HK97 family phage portal protein 1635074..1636264 Orientia tsutsugamushi str. Boryong 5218064 YP_001249002.1 CDS OTBS_1684 NC_009488.1 1636283 1636549 D hypothetical protein 1636283..1636549 Orientia tsutsugamushi str. Boryong 5218065 YP_001249003.1 CDS OTBS_1685 NC_009488.1 1636970 1637209 R transcriptional regulator complement(1636970..1637209) Orientia tsutsugamushi str. Boryong 5218066 YP_001249004.1 CDS rhp8 NC_009488.1 1637388 1638968 D ompA-like, autotransporter 1637388..1638968 Orientia tsutsugamushi str. Boryong 5218067 YP_001249005.1 CDS ank2A10 NC_009488.1 1640706 1641392 D ankyrin repeat-containing protein 1640706..1641392 Orientia tsutsugamushi str. Boryong 5218071 YP_001249006.1 CDS OTBS_1690 NC_009488.1 1641865 1642935 D hypothetical protein 1641865..1642935 Orientia tsutsugamushi str. Boryong 5218072 YP_001249007.1 CDS OTBS_1691 NC_009488.1 1643028 1643252 R hypothetical protein complement(1643028..1643252) Orientia tsutsugamushi str. Boryong 5218073 YP_001249008.1 CDS int NC_009488.1 1648459 1649703 R phage-related integrase complement(1648459..1649703) Orientia tsutsugamushi str. Boryong 5218077 YP_001249009.1 CDS sdhC NC_009488.1 1650326 1650676 D succinate dehydrogenase, cytochrome b556 subunit 1650326..1650676 Orientia tsutsugamushi str. Boryong 5218078 YP_001249010.1 CDS sdhD NC_009488.1 1650707 1651096 D succinate dehydrogenase hydrophobic membrane anchor protein 1650707..1651096 Orientia tsutsugamushi str. Boryong 5218079 YP_001249011.1 CDS sdhA NC_009488.1 1651291 1653078 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1651291..1653078 Orientia tsutsugamushi str. Boryong 5218080 YP_001249012.1 CDS sdhB NC_009488.1 1653107 1653898 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1653107..1653898 Orientia tsutsugamushi str. Boryong 5218081 YP_001249013.1 CDS lepB NC_009488.1 1655797 1656537 D signal peptidase I 1655797..1656537 Orientia tsutsugamushi str. Boryong 5218084 YP_001249014.1 CDS rnc NC_009488.1 1656578 1657333 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1656578..1657333 Orientia tsutsugamushi str. Boryong 5218085 YP_001249015.1 CDS aas NC_009488.1 1659053 1662526 R Synthesizes thioester adducts of fatty acids enzymatically to the phosphopantetheine group of acyl carrier protein; acylglycerophosphoethanolamine acyltransferase complement(1659053..1662526) Orientia tsutsugamushi str. Boryong 5218088 YP_001249016.1 CDS OTBS_1707 NC_009488.1 1662845 1663507 R esterase complement(1662845..1663507) Orientia tsutsugamushi str. Boryong 5218089 YP_001249017.1 CDS nth NC_009488.1 1663474 1664112 R endonuclease III complement(1663474..1664112) Orientia tsutsugamushi str. Boryong 5218090 YP_001249018.1 CDS grlA NC_009488.1 1664167 1664541 D glutaredoxin-related protein 1664167..1664541 Orientia tsutsugamushi str. Boryong 5218091 YP_001249019.1 CDS OTBS_1710 NC_009488.1 1664602 1665150 D hypothetical protein 1664602..1665150 Orientia tsutsugamushi str. Boryong 5218092 YP_001249020.1 CDS OTBS_1712 NC_009488.1 1666183 1666344 D hypothetical protein 1666183..1666344 Orientia tsutsugamushi str. Boryong 5218094 YP_001249021.1 CDS OTBS_1714 NC_009488.1 1666414 1667214 R hypothetical protein complement(1666414..1667214) Orientia tsutsugamushi str. Boryong 5218096 YP_001249022.1 CDS p34 NC_009488.1 1667484 1668401 D p34 protein/ cation transporter 1667484..1668401 Orientia tsutsugamushi str. Boryong 5218097 YP_001249023.1 CDS codA NC_009488.1 1668457 1668924 D cytosine deaminase 1668457..1668924 Orientia tsutsugamushi str. Boryong 5218098 YP_001249024.1 CDS ligA NC_009488.1 1669002 1671098 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1669002..1671098 Orientia tsutsugamushi str. Boryong 5218099 YP_001249025.1 CDS OTBS_1718 NC_009488.1 1671105 1672877 D aminopeptidase 1671105..1672877 Orientia tsutsugamushi str. Boryong 5218100 YP_001249026.1 CDS OTBS_1720 NC_009488.1 1673512 1673670 R hypothetical protein complement(1673512..1673670) Orientia tsutsugamushi str. Boryong 5218102 YP_001249027.1 CDS hkp35 NC_009488.1 1674930 1675877 D signal transduction histidine kinase 1674930..1675877 Orientia tsutsugamushi str. Boryong 5218105 YP_001249028.1 CDS int NC_009488.1 1676815 1678059 D phage-related integrase 1676815..1678059 Orientia tsutsugamushi str. Boryong 5218108 YP_001249029.1 CDS tchA NC_009488.1 1678185 1678520 D hypothetical protein 1678185..1678520 Orientia tsutsugamushi str. Boryong 5218109 YP_001249030.1 CDS traE NC_009488.1 1678520 1679071 D conjugative transfer protein 1678520..1679071 Orientia tsutsugamushi str. Boryong 5218110 YP_001249031.1 CDS tchB NC_009488.1 1679068 1679469 D hypothetical protein 1679068..1679469 Orientia tsutsugamushi str. Boryong 5218111 YP_001249032.1 CDS traB NC_009488.1 1679581 1680045 D conjugative pilus assembly protein 1679581..1680045 Orientia tsutsugamushi str. Boryong 5218112 YP_001249033.1 CDS traV NC_009488.1 1680045 1680335 D conjugative transfer protein 1680045..1680335 Orientia tsutsugamushi str. Boryong 5218113 YP_001249034.1 CDS trbC NC_009488.1 1681292 1681612 D conjugative transfer protein 1681292..1681612 Orientia tsutsugamushi str. Boryong 5218115 YP_001249035.1 CDS traD_F NC_009488.1 1685432 1686577 D conjugative transfer protein 1685432..1686577 Orientia tsutsugamushi str. Boryong 5218120 YP_001249036.1 CDS tnE NC_009488.1 1686579 1687490 R transposase and inactivated derivative complement(1686579..1687490) Orientia tsutsugamushi str. Boryong 5218121 YP_001249037.1 CDS traD_Ti NC_009488.1 1692287 1692742 D conjugative transfer protein 1692287..1692742 Orientia tsutsugamushi str. Boryong 5218124 YP_001249038.1 CDS rhp4 NC_009488.1 1692837 1693385 D hypothetical protein 1692837..1693385 Orientia tsutsugamushi str. Boryong 5218125 YP_001249039.1 CDS OTBS_1744 NC_009488.1 1693466 1694350 R hypothetical protein complement(1693466..1694350) Orientia tsutsugamushi str. Boryong 5218126 YP_001249040.1 CDS spoT39 NC_009488.1 1694484 1695059 R spoT-like ppGpp hydrolase complement(1694484..1695059) Orientia tsutsugamushi str. Boryong 5218127 YP_001249041.1 CDS hkp37 NC_009488.1 1695160 1696761 R signal transduction histidine kinase complement(1695160..1696761) Orientia tsutsugamushi str. Boryong 5218128 YP_001249042.1 CDS OTBS_1749 NC_009488.1 1697925 1699793 D hypothetical protein 1697925..1699793 Orientia tsutsugamushi str. Boryong 5218131 YP_001249043.1 CDS rhp5 NC_009488.1 1700037 1700213 R hypothetical protein complement(1700037..1700213) Orientia tsutsugamushi str. Boryong 5218132 YP_001249044.1 CDS rhp6 NC_009488.1 1701579 1702082 R ompA-like autotransporter complement(1701579..1702082) Orientia tsutsugamushi str. Boryong 5218134 YP_001249045.1 CDS ank1C12 NC_009488.1 1702183 1702827 R ankyrin repeat-containing protein complement(1702183..1702827) Orientia tsutsugamushi str. Boryong 5218135 YP_001249046.1 CDS ank1u8 NC_009488.1 1703557 1705512 R ankyrin repeat-containing protein complement(1703557..1705512) Orientia tsutsugamushi str. Boryong 5218137 YP_001249047.1 CDS OTBS_1757 NC_009488.1 1706000 1706356 R hypothetical protein complement(1706000..1706356) Orientia tsutsugamushi str. Boryong 5218139 YP_001249048.1 CDS yajC NC_009488.1 1708150 1708530 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1708150..1708530 Orientia tsutsugamushi str. Boryong 5218142 YP_001249049.1 CDS secD NC_009488.1 1708527 1710089 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1708527..1710089 Orientia tsutsugamushi str. Boryong 5218143 YP_001249050.1 CDS aatA NC_009488.1 1712685 1713887 R aspartate aminotransferase complement(1712685..1713887) Orientia tsutsugamushi str. Boryong 5218148 YP_001249051.1 CDS tpr1B17 NC_009488.1 1713996 1715033 D hypothetical protein 1713996..1715033 Orientia tsutsugamushi str. Boryong 5218149 YP_001249052.1 CDS vacJ NC_009488.1 1715093 1715926 D VacJ-like lipoprotein 1715093..1715926 Orientia tsutsugamushi str. Boryong 5218150 YP_001249053.1 CDS OTBS_1769 NC_009488.1 1715923 1716513 D hypothetical protein 1715923..1716513 Orientia tsutsugamushi str. Boryong 5218151 YP_001249054.1 CDS OTBS_1771 NC_009488.1 1717783 1718295 D hypothetical protein 1717783..1718295 Orientia tsutsugamushi str. Boryong 5218153 YP_001249055.1 CDS recO NC_009488.1 1718353 1719078 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1718353..1719078 Orientia tsutsugamushi str. Boryong 5218154 YP_001249056.1 CDS traW NC_009488.1 1721828 1721980 R conjugative transfer protein complement(1721828..1721980) Orientia tsutsugamushi str. Boryong 5218161 YP_001249057.1 CDS OTBS_1780 NC_009488.1 1722051 1722374 R hypothetical protein complement(1722051..1722374) Orientia tsutsugamushi str. Boryong 5218162 YP_001249058.1 CDS radC NC_009488.1 1722413 1723093 R DNA repair protein complement(1722413..1723093) Orientia tsutsugamushi str. Boryong 5218163 YP_001249059.1 CDS rpsL NC_009488.1 1723345 1723716 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1723345..1723716 Orientia tsutsugamushi str. Boryong 5218164 YP_001249060.1 CDS rpsG NC_009488.1 1723740 1724261 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1723740..1724261 Orientia tsutsugamushi str. Boryong 5218165 YP_001249061.1 CDS fusA NC_009488.1 1724265 1726385 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1724265..1726385 Orientia tsutsugamushi str. Boryong 5218166 YP_001249062.1 CDS rpsA NC_009488.1 1726594 1728117 D 30S ribosomal protein S1 1726594..1728117 Orientia tsutsugamushi str. Boryong 5218167 YP_001249063.1 CDS tnB NC_009488.1 1729526 1730392 R transposase and inactivated derivative complement(1729526..1730392) Orientia tsutsugamushi str. Boryong 5218169 YP_001249064.1 CDS cspA NC_009488.1 1731238 1731459 R cold shock-like protein complement(1731238..1731459) Orientia tsutsugamushi str. Boryong 5218170 YP_001249065.1 CDS gcvT NC_009488.1 1733207 1734073 D gcvT-like aminomethyltransferase 1733207..1734073 Orientia tsutsugamushi str. Boryong 5218175 YP_001249066.1 CDS pkcI NC_009488.1 1736861 1737232 D protein kinase C inhibitor 1 1736861..1737232 Orientia tsutsugamushi str. Boryong 5218179 YP_001249067.1 CDS asd NC_009488.1 1737280 1738329 D aspartate-semialdehyde dehydrogenase 1737280..1738329 Orientia tsutsugamushi str. Boryong 5218180 YP_001249068.1 CDS cyoB NC_009488.1 1738458 1739399 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(1738458..1739399) Orientia tsutsugamushi str. Boryong 5218181 YP_001249069.1 CDS coxA NC_009488.1 1739411 1740997 R cytochrome c oxidase polypeptide I complement(1739411..1740997) Orientia tsutsugamushi str. Boryong 5218182 YP_001249070.1 CDS OTBS_1801 NC_009488.1 1741189 1742610 R hypothetical protein complement(1741189..1742610) Orientia tsutsugamushi str. Boryong 5218183 YP_001249071.1 CDS rplY NC_009488.1 1742936 1743559 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1742936..1743559 Orientia tsutsugamushi str. Boryong 5218184 YP_001249072.1 CDS pth NC_009488.1 1743559 1744119 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1743559..1744119 Orientia tsutsugamushi str. Boryong 5218185 YP_001249073.1 CDS ychF NC_009488.1 1744129 1745229 D GTP-binding protein 1744129..1745229 Orientia tsutsugamushi str. Boryong 5218186 YP_001249074.1 CDS OTBS_1805 NC_009488.1 1745277 1745438 R hypothetical protein complement(1745277..1745438) Orientia tsutsugamushi str. Boryong 5218187 YP_001249075.1 CDS xth1 NC_009488.1 1746339 1747160 D exodeoxyribonuclease III 1746339..1747160 Orientia tsutsugamushi str. Boryong 5218189 YP_001249076.1 CDS rhp6 NC_009488.1 1748208 1748513 D ompA-like autotransporter 1748208..1748513 Orientia tsutsugamushi str. Boryong 5218193 YP_001249077.1 CDS OTBS_1815 NC_009488.1 1750797 1751309 R hypothetical protein complement(1750797..1751309) Orientia tsutsugamushi str. Boryong 5218197 YP_001249078.1 CDS cycC NC_009488.1 1752135 1752683 R cytochrome c complement(1752135..1752683) Orientia tsutsugamushi str. Boryong 5218199 YP_001249079.1 CDS hflC NC_009488.1 1752932 1753882 D membrane protease, stomatin/prohibitin-like protein 1752932..1753882 Orientia tsutsugamushi str. Boryong 5218200 YP_001249080.1 CDS ank1C13 NC_009488.1 1758699 1758833 R ankyrin repeat-containing protein complement(1758699..1758833) Orientia tsutsugamushi str. Boryong 5218205 YP_001249081.1 CDS trpS NC_009488.1 1758969 1759976 R tryptophanyl-tRNA synthetase complement(1758969..1759976) Orientia tsutsugamushi str. Boryong 5218206 YP_001249082.1 CDS rhp7 NC_009488.1 1763312 1763458 R hypothetical protein complement(1763312..1763458) Orientia tsutsugamushi str. Boryong 5218212 YP_001249083.1 CDS OTBS_1832 NC_009488.1 1763576 1763815 R hypothetical protein complement(1763576..1763815) Orientia tsutsugamushi str. Boryong 5218214 YP_001249084.1 CDS mrp NC_009488.1 1766603 1767616 R ATP-binding protein complement(1766603..1767616) Orientia tsutsugamushi str. Boryong 5218216 YP_001249085.1 CDS hflK NC_009488.1 1767800 1768849 D membrane bound protease 1767800..1768849 Orientia tsutsugamushi str. Boryong 5218217 YP_001249086.1 CDS hflC NC_009488.1 1768873 1769739 D membrane protease, stomatin/prohibitin-like protein 1768873..1769739 Orientia tsutsugamushi str. Boryong 5218218 YP_001249087.1 CDS htrA NC_009488.1 1769757 1771157 D periplasmic serine protease 1769757..1771157 Orientia tsutsugamushi str. Boryong 5218219 YP_001249088.1 CDS OTBS_1838 NC_009488.1 1771211 1771390 R hypothetical protein complement(1771211..1771390) Orientia tsutsugamushi str. Boryong 5218220 YP_001249089.1 CDS pal NC_009488.1 1771365 1771973 D peptidoglycan-associated lipoprotein precursor 1771365..1771973 Orientia tsutsugamushi str. Boryong 5218221 YP_001249090.1 CDS OTBS_1840 NC_009488.1 1772228 1775020 R hypothetical protein complement(1772228..1775020) Orientia tsutsugamushi str. Boryong 5218222 YP_001249091.1 CDS trxB2 NC_009488.1 1775219 1776235 D thioredoxin reductase 1775219..1776235 Orientia tsutsugamushi str. Boryong 5218223 YP_001249092.1 CDS folD NC_009488.1 1776232 1777137 D methylenetetrahydrofolate dehydrogenase 1776232..1777137 Orientia tsutsugamushi str. Boryong 5218224 YP_001249093.1 CDS OTBS_1843 NC_009488.1 1777072 1778457 R hypothetical protein complement(1777072..1778457) Orientia tsutsugamushi str. Boryong 5218225 YP_001249094.1 CDS topA NC_009488.1 1778457 1780823 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1778457..1780823) Orientia tsutsugamushi str. Boryong 5218226 YP_001249095.1 CDS mdh NC_009488.1 1780916 1781872 R malate dehydrogenase complement(1780916..1781872) Orientia tsutsugamushi str. Boryong 5218227 YP_001249096.1 CDS rimM NC_009488.1 1782100 1782594 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1782100..1782594) Orientia tsutsugamushi str. Boryong 5218228 YP_001249097.1 CDS OTBS_1847 NC_009488.1 1782763 1785294 D hypothetical protein 1782763..1785294 Orientia tsutsugamushi str. Boryong 5218229 YP_001249098.1 CDS fmt NC_009488.1 1785594 1786517 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(1785594..1786517) Orientia tsutsugamushi str. Boryong 5218230 YP_001249099.1 CDS def NC_009488.1 1786514 1787059 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1786514..1787059) Orientia tsutsugamushi str. Boryong 5218231 YP_001249100.1 CDS rhp6 NC_009488.1 1790877 1791263 D ompA-like autotransporter 1790877..1791263 Orientia tsutsugamushi str. Boryong 5218236 YP_001249101.1 CDS OTBS_1856 NC_009488.1 1792550 1792804 D hypothetical protein 1792550..1792804 Orientia tsutsugamushi str. Boryong 5218238 YP_001249102.1 CDS ndk NC_009488.1 1801776 1802201 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(1801776..1802201) Orientia tsutsugamushi str. Boryong 5218244 YP_001249103.1 CDS tchA NC_009488.1 1807058 1807393 D hypothetical protein 1807058..1807393 Orientia tsutsugamushi str. Boryong 5218250 YP_001249104.1 CDS tchB NC_009488.1 1807941 1808342 D hypothetical protein 1807941..1808342 Orientia tsutsugamushi str. Boryong 5218252 YP_001249105.1 CDS traB NC_009488.1 1808454 1808918 D conjugative pilus assembly protein 1808454..1808918 Orientia tsutsugamushi str. Boryong 5218253 YP_001249106.1 CDS traV NC_009488.1 1808918 1809208 D conjugative transfer protein 1808918..1809208 Orientia tsutsugamushi str. Boryong 5218254 YP_001249107.1 CDS trbC NC_009488.1 1810165 1810485 D conjugative transfer protein 1810165..1810485 Orientia tsutsugamushi str. Boryong 5218256 YP_001249108.1 CDS traF NC_009488.1 1812179 1812883 D conjugative pilus assembly protein 1812179..1812883 Orientia tsutsugamushi str. Boryong 5218258 YP_001249109.1 CDS OTBS_1880 NC_009488.1 1815419 1816288 R hypothetical protein complement(1815419..1816288) Orientia tsutsugamushi str. Boryong 5218263 YP_001249110.1 CDS coxW NC_009488.1 1818942 1820021 R cytochrome c oxidase assembly protein complement(1818942..1820021) Orientia tsutsugamushi str. Boryong 5218266 YP_001249111.1 CDS OTBS_1887 NC_009488.1 1822931 1823326 D hypothetical protein 1822931..1823326 Orientia tsutsugamushi str. Boryong 5218270 YP_001249112.1 CDS bcr NC_009488.1 1823967 1825148 R Bcr/CflA subfamily drug resistance transporter complement(1823967..1825148) Orientia tsutsugamushi str. Boryong 5218274 YP_001249113.1 CDS rhp7 NC_009488.1 1826352 1826552 D hypothetical protein 1826352..1826552 Orientia tsutsugamushi str. Boryong 5218275 YP_001249114.1 CDS int NC_009488.1 1826677 1827921 D phage-related integrase 1826677..1827921 Orientia tsutsugamushi str. Boryong 5218276 YP_001249115.1 CDS tchA NC_009488.1 1828047 1828382 D hypothetical protein 1828047..1828382 Orientia tsutsugamushi str. Boryong 5218277 YP_001249116.1 CDS traE NC_009488.1 1828382 1828933 D conjugative transfer protein 1828382..1828933 Orientia tsutsugamushi str. Boryong 5218278 YP_001249117.1 CDS tchB NC_009488.1 1828930 1829406 D hypothetical protein 1828930..1829406 Orientia tsutsugamushi str. Boryong 5218279 YP_001249118.1 CDS traV NC_009488.1 1832307 1832474 D conjugative transfer protein 1832307..1832474 Orientia tsutsugamushi str. Boryong 5218286 YP_001249119.1 CDS tchA NC_009488.1 1832433 1832768 R hypothetical protein complement(1832433..1832768) Orientia tsutsugamushi str. Boryong 5218287 YP_001249120.1 CDS znuB NC_009488.1 1836545 1837333 R Zinc/manganese ABC transporter permease complement(1836545..1837333) Orientia tsutsugamushi str. Boryong 5218292 YP_001249121.1 CDS znuC NC_009488.1 1837314 1838027 R Zinc ABC transporter ATP-binding protein complement(1837314..1838027) Orientia tsutsugamushi str. Boryong 5218293 YP_001249122.1 CDS OTBS_1911 NC_009488.1 1838295 1838855 R hypothetical protein complement(1838295..1838855) Orientia tsutsugamushi str. Boryong 5218294 YP_001249123.1 CDS dnaX NC_009488.1 1838867 1840546 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; rhe tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(1838867..1840546) Orientia tsutsugamushi str. Boryong 5218295 YP_001249124.1 CDS rhp8 NC_009488.1 1841601 1844597 D ompA-like, autotransporter 1841601..1844597 Orientia tsutsugamushi str. Boryong 5218296 YP_001249125.1 CDS OTBS_1914 NC_009488.1 1844689 1846164 R hypothetical protein complement(1844689..1846164) Orientia tsutsugamushi str. Boryong 5218297 YP_001249126.1 CDS xseA NC_009488.1 1846222 1847592 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(1846222..1847592) Orientia tsutsugamushi str. Boryong 5218298 YP_001249127.1 CDS OTBS_1916 NC_009488.1 1847828 1848577 R hypothetical protein complement(1847828..1848577) Orientia tsutsugamushi str. Boryong 5218299 YP_001249128.1 CDS OTBS_1917 NC_009488.1 1848681 1849349 D hypothetical protein 1848681..1849349 Orientia tsutsugamushi str. Boryong 5218300 YP_001249129.1 CDS rplU NC_009488.1 1849417 1849812 D 50S ribosomal protein L21 1849417..1849812 Orientia tsutsugamushi str. Boryong 5218301 YP_001249130.1 CDS rpmA NC_009488.1 1849856 1850125 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1849856..1850125 Orientia tsutsugamushi str. Boryong 5218302 YP_001249131.1 CDS OTBS_1921 NC_009488.1 1851664 1851762 D hypothetical protein 1851664..1851762 Orientia tsutsugamushi str. Boryong 5218304 YP_001249132.1 CDS pgsA NC_009488.1 1857453 1858001 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1857453..1858001) Orientia tsutsugamushi str. Boryong 5218313 YP_001249133.1 CDS spoT43 NC_009488.1 1862942 1863517 D spoT-like ppGpp hydrolase 1862942..1863517 Orientia tsutsugamushi str. Boryong 5218976 YP_001249134.1 CDS rlpA NC_009488.1 1868400 1869065 R rare lipoprotein A precursor complement(1868400..1869065) Orientia tsutsugamushi str. Boryong 5218983 YP_001249135.1 CDS OTBS_1945 NC_009488.1 1870097 1870963 D mechanosensitive ion channel MscS 1870097..1870963 Orientia tsutsugamushi str. Boryong 5218985 YP_001249136.1 CDS OTBS_1946 NC_009488.1 1871912 1872700 R hypothetical protein complement(1871912..1872700) Orientia tsutsugamushi str. Boryong 5218986 YP_001249137.1 CDS metG NC_009488.1 1872713 1874248 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1872713..1874248) Orientia tsutsugamushi str. Boryong 5218987 YP_001249138.1 CDS priA NC_009488.1 1874433 1876373 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1874433..1876373 Orientia tsutsugamushi str. Boryong 5218988 YP_001249139.1 CDS virB3 NC_009488.1 1876748 1877035 D type IV secretion system protein VirB3 1876748..1877035 Orientia tsutsugamushi str. Boryong 5218989 YP_001249140.1 CDS virB4 NC_009488.1 1877046 1879463 D type IV secretion system ATPase VirB4 1877046..1879463 Orientia tsutsugamushi str. Boryong 5218990 YP_001249141.1 CDS virB6-1 NC_009488.1 1879463 1881910 D type IV secretion system protein 1879463..1881910 Orientia tsutsugamushi str. Boryong 5218991 YP_001249142.1 CDS virB6-2 NC_009488.1 1881932 1885804 D type IV secretion system protein 1881932..1885804 Orientia tsutsugamushi str. Boryong 5218992 YP_001249143.1 CDS virB6-3 NC_009488.1 1885858 1889133 D type IV secretion system protein 1885858..1889133 Orientia tsutsugamushi str. Boryong 5218993 YP_001249144.1 CDS virB6-4 NC_009488.1 1889126 1891693 D type IV secretion system protein 1889126..1891693 Orientia tsutsugamushi str. Boryong 5218994 YP_001249145.1 CDS proP NC_009488.1 1891730 1892983 D proline/betaine transporter 1891730..1892983 Orientia tsutsugamushi str. Boryong 5218995 YP_001249146.1 CDS mutL NC_009488.1 1893012 1895054 D DNA mismatch repair protein 1893012..1895054 Orientia tsutsugamushi str. Boryong 5218996 YP_001249147.1 CDS gltX NC_009488.1 1895180 1896580 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1895180..1896580 Orientia tsutsugamushi str. Boryong 5218997 YP_001249148.1 CDS cysS NC_009488.1 1896645 1898081 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1896645..1898081 Orientia tsutsugamushi str. Boryong 5218998 YP_001249149.1 CDS uvrD NC_009488.1 1899064 1901214 R DNA helicase II, CAI27690 complement(1899064..1901214) Orientia tsutsugamushi str. Boryong 5219001 YP_001249150.1 CDS OTBS_1967 NC_009488.1 1903969 1904559 R hypothetical protein complement(1903969..1904559) Orientia tsutsugamushi str. Boryong 5219007 YP_001249151.1 CDS OTBS_1968 NC_009488.1 1904877 1905035 D hypothetical protein 1904877..1905035 Orientia tsutsugamushi str. Boryong 5219008 YP_001249152.1 CDS OTBS_1971 NC_009488.1 1906400 1906645 D hypothetical protein 1906400..1906645 Orientia tsutsugamushi str. Boryong 5219011 YP_001249153.1 CDS OTBS_1972 NC_009488.1 1906681 1906893 D hypothetical protein 1906681..1906893 Orientia tsutsugamushi str. Boryong 5219012 YP_001249154.1 CDS spoT44 NC_009488.1 1907579 1908148 R spoT-like ppGpp hydrolase complement(1907579..1908148) Orientia tsutsugamushi str. Boryong 5219014 YP_001249155.1 CDS hkp38 NC_009488.1 1908249 1909106 R signal transduction histidine kinase complement(1908249..1909106) Orientia tsutsugamushi str. Boryong 5219015 YP_001249156.1 CDS hkp39 NC_009488.1 1909114 1909857 R signal transduction histidine kinase complement(1909114..1909857) Orientia tsutsugamushi str. Boryong 5219016 YP_001249157.1 CDS rhp5 NC_009488.1 1910209 1910925 R hypothetical protein complement(1910209..1910925) Orientia tsutsugamushi str. Boryong 5219017 YP_001249158.1 CDS dam30 NC_009488.1 1911401 1912207 D site-specific DNA adenine methylase 1911401..1912207 Orientia tsutsugamushi str. Boryong 5219018 YP_001249159.1 CDS rhp6 NC_009488.1 1912235 1912777 R ompA-like autotransporter complement(1912235..1912777) Orientia tsutsugamushi str. Boryong 5219019 YP_001249160.1 CDS ank1C14 NC_009488.1 1912797 1913741 R ankyrin repeat-containing protein complement(1912797..1913741) Orientia tsutsugamushi str. Boryong 5219020 YP_001249161.1 CDS rhp6 NC_009488.1 1915182 1915391 R ompA-like autotransporter complement(1915182..1915391) Orientia tsutsugamushi str. Boryong 5219022 YP_001249162.1 CDS OTBS_1984 NC_009488.1 1916159 1916959 D hypothetical protein 1916159..1916959 Orientia tsutsugamushi str. Boryong 5219024 YP_001249163.1 CDS rhp7 NC_009488.1 1918372 1918572 D hypothetical protein 1918372..1918572 Orientia tsutsugamushi str. Boryong 5219028 YP_001249164.1 CDS int NC_009488.1 1918697 1919941 D phage-related integrase 1918697..1919941 Orientia tsutsugamushi str. Boryong 5219029 YP_001249165.1 CDS tchA NC_009488.1 1920067 1920402 D hypothetical protein 1920067..1920402 Orientia tsutsugamushi str. Boryong 5219030 YP_001249166.1 CDS traE NC_009488.1 1920402 1920953 D conjugative transfer protein 1920402..1920953 Orientia tsutsugamushi str. Boryong 5219031 YP_001249167.1 CDS tchB NC_009488.1 1920950 1921351 D hypothetical protein 1920950..1921351 Orientia tsutsugamushi str. Boryong 5219032 YP_001249168.1 CDS traB NC_009488.1 1921463 1921927 D conjugative pilus assembly protein 1921463..1921927 Orientia tsutsugamushi str. Boryong 5219033 YP_001249169.1 CDS traV NC_009488.1 1921927 1922217 D conjugative transfer protein 1921927..1922217 Orientia tsutsugamushi str. Boryong 5219034 YP_001249170.1 CDS trbC NC_009488.1 1923174 1923494 D conjugative transfer protein 1923174..1923494 Orientia tsutsugamushi str. Boryong 5219036 YP_001249171.1 CDS tpr1B18 NC_009488.1 1931709 1932848 D hypothetical protein 1931709..1932848 Orientia tsutsugamushi str. Boryong 5219042 YP_001249172.1 CDS tnE NC_009488.1 1934611 1935654 R transposase and inactivated derivative complement(1934611..1935654) Orientia tsutsugamushi str. Boryong 5219044 YP_001249173.1 CDS OTBS_2006 NC_009488.1 1940183 1940383 D hypothetical protein 1940183..1940383 Orientia tsutsugamushi str. Boryong 5219046 YP_001249174.1 CDS traD_Ti NC_009488.1 1940385 1940840 D conjugative transfer protein 1940385..1940840 Orientia tsutsugamushi str. Boryong 5219047 YP_001249175.1 CDS rhp4 NC_009488.1 1940928 1941467 D hypothetical protein 1940928..1941467 Orientia tsutsugamushi str. Boryong 5219048 YP_001249176.1 CDS spoT45 NC_009488.1 1941504 1942079 R spoT-like ppGpp hydrolase complement(1941504..1942079) Orientia tsutsugamushi str. Boryong 5219049 YP_001249177.1 CDS hkp40 NC_009488.1 1942180 1943037 R signal transduction histidine kinase complement(1942180..1943037) Orientia tsutsugamushi str. Boryong 5219050 YP_001249178.1 CDS hkp41 NC_009488.1 1943045 1943788 R signal transduction histidine kinase complement(1943045..1943788) Orientia tsutsugamushi str. Boryong 5219051 YP_001249179.1 CDS ank2A11 NC_009488.1 1945118 1947091 D ankyrin repeat-containing protein 1945118..1947091 Orientia tsutsugamushi str. Boryong 5219052 YP_001249180.1 CDS dam31 NC_009488.1 1947706 1948518 D site-specific DNA adenine methylase 1947706..1948518 Orientia tsutsugamushi str. Boryong 5219053 YP_001249181.1 CDS OTBS_2014 NC_009488.1 1948714 1949814 R hypothetical protein complement(1948714..1949814) Orientia tsutsugamushi str. Boryong 5219054 YP_001249182.1 CDS tchD NC_009488.1 1950244 1951938 R hypothetical protein complement(1950244..1951938) Orientia tsutsugamushi str. Boryong 5219055 YP_001249183.1 CDS rhp9 NC_009488.1 1954810 1955226 R hypothetical protein complement(1954810..1955226) Orientia tsutsugamushi str. Boryong 5219060 YP_001249184.1 CDS rhp7 NC_009488.1 1955679 1955879 D hypothetical protein 1955679..1955879 Orientia tsutsugamushi str. Boryong 5219061 YP_001249185.1 CDS int NC_009488.1 1956004 1957248 D phage-related integrase 1956004..1957248 Orientia tsutsugamushi str. Boryong 5219062 YP_001249186.1 CDS tchA NC_009488.1 1957374 1957709 D hypothetical protein 1957374..1957709 Orientia tsutsugamushi str. Boryong 5219063 YP_001249187.1 CDS traE NC_009488.1 1957709 1958260 D conjugative transfer protein 1957709..1958260 Orientia tsutsugamushi str. Boryong 5219064 YP_001249188.1 CDS tchB NC_009488.1 1958257 1958658 D hypothetical protein 1958257..1958658 Orientia tsutsugamushi str. Boryong 5219065 YP_001249189.1 CDS traB NC_009488.1 1958770 1959234 D conjugative pilus assembly protein 1958770..1959234 Orientia tsutsugamushi str. Boryong 5219066 YP_001249190.1 CDS traV NC_009488.1 1959234 1959524 D conjugative transfer protein 1959234..1959524 Orientia tsutsugamushi str. Boryong 5219067 YP_001249191.1 CDS trbC NC_009488.1 1960481 1960801 D conjugative transfer protein 1960481..1960801 Orientia tsutsugamushi str. Boryong 5219069 YP_001249192.1 CDS traD_F NC_009488.1 1964810 1965070 D conjugative transfer protein 1964810..1965070 Orientia tsutsugamushi str. Boryong 5219074 YP_001249193.1 CDS rhp4 NC_009488.1 1968918 1969451 D hypothetical protein 1968918..1969451 Orientia tsutsugamushi str. Boryong 5219079 YP_001249194.1 CDS lspA NC_009488.1 1974504 1975013 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(1974504..1975013) Orientia tsutsugamushi str. Boryong 5219083 YP_001249195.1 CDS tpr1B19 NC_009488.1 1975308 1976102 D hypothetical protein 1975308..1976102 Orientia tsutsugamushi str. Boryong 5219085 YP_001249196.1 CDS OTBS_2045 NC_009488.1 1976736 1976954 D hypothetical protein 1976736..1976954 Orientia tsutsugamushi str. Boryong 5219086 YP_001249197.1 CDS rhp6 NC_009488.1 1980585 1981088 D ompA-like autotransporter 1980585..1981088 Orientia tsutsugamushi str. Boryong 5219090 YP_001249198.1 CDS ank2A12 NC_009488.1 1982496 1983443 D ankyrin repeat-containing protein 1982496..1983443 Orientia tsutsugamushi str. Boryong 5219092 YP_001249199.1 CDS OTBS_2052 NC_009488.1 1983421 1984470 D hypothetical protein 1983421..1984470 Orientia tsutsugamushi str. Boryong 5219093 YP_001249200.1 CDS hkp42 NC_009488.1 1985015 1985842 D signal transduction histidine kinase 1985015..1985842 Orientia tsutsugamushi str. Boryong 5219094 YP_001249201.1 CDS spoT47 NC_009488.1 1986739 1987332 D spoT-like ppGpp hydrolase 1986739..1987332 Orientia tsutsugamushi str. Boryong 5219096 YP_001249202.1 CDS rhp4 NC_009488.1 1987400 1987945 R hypothetical protein complement(1987400..1987945) Orientia tsutsugamushi str. Boryong 5219097 YP_001249203.1 CDS OTBS_2058 NC_009488.1 1989315 1991051 R hypothetical protein complement(1989315..1991051) Orientia tsutsugamushi str. Boryong 5219099 YP_001249204.1 CDS OTBS_2060 NC_009488.1 1992371 1992571 R hypothetical protein complement(1992371..1992571) Orientia tsutsugamushi str. Boryong 5219101 YP_001249205.1 CDS tnE NC_009488.1 1997164 1998075 D transposase and inactivated derivative 1997164..1998075 Orientia tsutsugamushi str. Boryong 5219103 YP_001249206.1 CDS tpr1B20 NC_009488.1 1999832 2000494 R hypothetical protein complement(1999832..2000494) Orientia tsutsugamushi str. Boryong 5219105 YP_001249207.1 CDS traN NC_009488.1 2004467 2006128 R conjugative transfer protein complement(2004467..2006128) Orientia tsutsugamushi str. Boryong 5219109 YP_001249208.1 CDS trbC NC_009488.1 2006151 2006471 R conjugative transfer protein complement(2006151..2006471) Orientia tsutsugamushi str. Boryong 5219110 YP_001249209.1 CDS tchE NC_009488.1 2007549 2007737 R hypothetical protein complement(2007549..2007737) Orientia tsutsugamushi str. Boryong 5219112 YP_001249210.1 CDS traW NC_009488.1 2007820 2008479 R conjugative transfer protein complement(2007820..2008479) Orientia tsutsugamushi str. Boryong 5219113 YP_001249211.1 CDS traV NC_009488.1 2010947 2011276 R conjugative transfer protein complement(2010947..2011276) Orientia tsutsugamushi str. Boryong 5219115 YP_001249212.1 CDS traB NC_009488.1 2011276 2012607 R conjugative pilus assembly protein complement(2011276..2012607) Orientia tsutsugamushi str. Boryong 5219116 YP_001249213.1 CDS tchC NC_009488.1 2012661 2012993 R hypothetical protein complement(2012661..2012993) Orientia tsutsugamushi str. Boryong 5219117 YP_001249214.1 CDS tchB NC_009488.1 2013137 2013613 R hypothetical protein complement(2013137..2013613) Orientia tsutsugamushi str. Boryong 5219118 YP_001249215.1 CDS tchA NC_009488.1 2014161 2014496 R hypothetical protein complement(2014161..2014496) Orientia tsutsugamushi str. Boryong 5219120 YP_001249216.1 CDS int NC_009488.1 2014552 2015880 R phage-related integrase complement(2014552..2015880) Orientia tsutsugamushi str. Boryong 5219121 YP_001249217.1 CDS spoT48 NC_009488.1 2019298 2019873 D spoT-like ppGpp hydrolase 2019298..2019873 Orientia tsutsugamushi str. Boryong 5219126 YP_001249218.1 CDS ank1C15 NC_009488.1 2020055 2020357 D ankyrin repeat-containing protein 2020055..2020357 Orientia tsutsugamushi str. Boryong 5219127 YP_001249219.1 CDS OTBS_2087 NC_009488.1 2021024 2022367 D hypothetical protein 2021024..2022367 Orientia tsutsugamushi str. Boryong 5219128 YP_001249220.1 CDS mnmA NC_009488.1 2022980 2024089 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2022980..2024089) Orientia tsutsugamushi str. Boryong 5219129 YP_001249221.1 CDS tnD NC_009488.1 2027273 2028235 R transposase and inactivated derivative complement(2027273..2028235) Orientia tsutsugamushi str. Boryong 5219133 YP_001249222.1 CDS ank1C16 NC_009488.1 2028461 2028718 D ankyrin repeat-containing protein 2028461..2028718 Orientia tsutsugamushi str. Boryong 5219134 YP_001249223.1 CDS OTBS_2094 NC_009488.1 2029125 2029985 R hypothetical protein complement(2029125..2029985) Orientia tsutsugamushi str. Boryong 5219135 YP_001249224.1 CDS rhp6 NC_009488.1 2030581 2030841 D ompA-like autotransporter 2030581..2030841 Orientia tsutsugamushi str. Boryong 5219136 YP_001249225.1 CDS OTBS_2097 NC_009488.1 2031578 2031805 R hypothetical protein complement(2031578..2031805) Orientia tsutsugamushi str. Boryong 5219138 YP_001249226.1 CDS rhp4 NC_009488.1 2032135 2032665 D hypothetical protein 2032135..2032665 Orientia tsutsugamushi str. Boryong 5219139 YP_001249227.1 CDS dam34 NC_009488.1 2032757 2032969 R site-specific DNA adenine methylase complement(2032757..2032969) Orientia tsutsugamushi str. Boryong 5219140 YP_001249228.1 CDS hkp44 NC_009488.1 2033318 2034064 D signal transduction histidine kinase 2033318..2034064 Orientia tsutsugamushi str. Boryong 5219141 YP_001249229.1 CDS hkp45 NC_009488.1 2034069 2034926 D signal transduction histidine kinase 2034069..2034926 Orientia tsutsugamushi str. Boryong 5219142 YP_001249230.1 CDS tnA NC_009488.1 2036283 2037158 D transposase and inactivated derivative 2036283..2037158 Orientia tsutsugamushi str. Boryong 5219144 YP_001249231.1 CDS OTBS_2105 NC_009488.1 2037634 2044533 R hypothetical protein complement(2037634..2044533) Orientia tsutsugamushi str. Boryong 5219146 YP_001249232.1 CDS OTBS_2106 NC_009488.1 2044526 2045071 R hypothetical protein complement(2044526..2045071) Orientia tsutsugamushi str. Boryong 5219147 YP_001249233.1 CDS rhp2 NC_009488.1 2045634 2046953 R hypothetical protein complement(2045634..2046953) Orientia tsutsugamushi str. Boryong 5219148 YP_001249234.1 CDS xth1 NC_009488.1 2058242 2059027 R exodeoxyribonuclease III complement(2058242..2059027) Orientia tsutsugamushi str. Boryong 5219155 YP_001249235.1 CDS rhp2 NC_009488.1 2059643 2059912 R hypothetical protein complement(2059643..2059912) Orientia tsutsugamushi str. Boryong 5219157 YP_001249236.1 CDS OTBS_2124 NC_009488.1 2066336 2069986 R hypothetical protein complement(2066336..2069986) Orientia tsutsugamushi str. Boryong 5219166 YP_001249237.1 CDS rhp8 NC_009488.1 2070432 2072714 R ompA-like, autotransporter complement(2070432..2072714) Orientia tsutsugamushi str. Boryong 5219168 YP_001249238.1 CDS rhp8 NC_009488.1 2078988 2080937 D ompA-like, autotransporter 2078988..2080937 Orientia tsutsugamushi str. Boryong 5219179 YP_001249239.1 CDS OTBS_2143 NC_009488.1 2085200 2085334 D hypothetical protein 2085200..2085334 Orientia tsutsugamushi str. Boryong 5219185 YP_001249240.1 CDS rluC NC_009488.1 2085577 2086515 R ribosomal large subunit pseudouridine synthase complement(2085577..2086515) Orientia tsutsugamushi str. Boryong 5219186 YP_001249241.1 CDS holB NC_009488.1 2086499 2087371 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(2086499..2087371) Orientia tsutsugamushi str. Boryong 5219187 YP_001249242.1 CDS ppa NC_009488.1 2087395 2087922 R inorganic pyrophosphatase complement(2087395..2087922) Orientia tsutsugamushi str. Boryong 5219188 YP_001249243.1 CDS dksA NC_009488.1 2088005 2088436 R DnaK suppressor-like protein complement(2088005..2088436) Orientia tsutsugamushi str. Boryong 5219189 YP_001249244.1 CDS xerC NC_009488.1 2088470 2089408 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(2088470..2089408) Orientia tsutsugamushi str. Boryong 5219190 YP_001249245.1 CDS trmE NC_009488.1 2089434 2090777 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2089434..2090777) Orientia tsutsugamushi str. Boryong 5219191 YP_001249246.1 CDS OTBS_2150 NC_009488.1 2090858 2095783 D NAD-glutamate dehydrogenase 2090858..2095783 Orientia tsutsugamushi str. Boryong 5219192 YP_001249247.1 CDS secB NC_009488.1 2099142 2099624 R protein-export protein complement(2099142..2099624) Orientia tsutsugamushi str. Boryong 5219197 YP_001249248.1 CDS dcd NC_009488.1 2099667 2100233 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(2099667..2100233) Orientia tsutsugamushi str. Boryong 5219198 YP_001249249.1 CDS OTBS_2157 NC_009488.1 2100868 2102148 D hypothetical protein 2100868..2102148 Orientia tsutsugamushi str. Boryong 5219199 YP_001249250.1 CDS frr NC_009488.1 2102312 2102875 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2102312..2102875) Orientia tsutsugamushi str. Boryong 5219200 YP_001249251.1 CDS nuoG NC_009488.1 2103155 2105194 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2103155..2105194 Orientia tsutsugamushi str. Boryong 5219201 YP_001249252.1 CDS nuoH NC_009488.1 2105251 2106321 D NADH dehydrogenase I chain H 2105251..2106321 Orientia tsutsugamushi str. Boryong 5219202 YP_001249253.1 CDS nuoI NC_009488.1 2106347 2106832 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2106347..2106832 Orientia tsutsugamushi str. Boryong 5219203 YP_001249254.1 CDS nuoJ NC_009488.1 2106836 2107444 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2106836..2107444 Orientia tsutsugamushi str. Boryong 5219204 YP_001249255.1 CDS nuoK NC_009488.1 2107428 2107751 D NADH dehydrogenase I chain K 2107428..2107751 Orientia tsutsugamushi str. Boryong 5219205 YP_001249256.1 CDS nuoL NC_009488.1 2107755 2109662 D NADH dehydrogenase I chain L 2107755..2109662 Orientia tsutsugamushi str. Boryong 5219206 YP_001249257.1 CDS nuoM NC_009488.1 2109711 2111159 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2109711..2111159 Orientia tsutsugamushi str. Boryong 5219207 YP_001249258.1 CDS nuoN NC_009488.1 2111204 2112640 D NADH dehydrogenase I chain N 2111204..2112640 Orientia tsutsugamushi str. Boryong 5219208 YP_001249259.1 CDS tilS NC_009488.1 2112725 2114050 D tRNA(Ile)-lysidine synthetase 2112725..2114050 Orientia tsutsugamushi str. Boryong 5219209 YP_001249260.1 CDS ftsH NC_009488.1 2114067 2115950 D ATP-dependent metalloprotease 2114067..2115950 Orientia tsutsugamushi str. Boryong 5219210 YP_001249261.1 CDS mpg NC_009488.1 2115985 2116521 D responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 2115985..2116521 Orientia tsutsugamushi str. Boryong 5219211 YP_001249262.1 CDS OTBS_2170 NC_009488.1 2116537 2116959 D hypothetical protein 2116537..2116959 Orientia tsutsugamushi str. Boryong 5219212 YP_001249263.1 CDS rodA NC_009488.1 2117129 2118256 D rod shape-determining protein rodA 2117129..2118256 Orientia tsutsugamushi str. Boryong 5219213 YP_001249264.1 CDS OTBS_2172 NC_009488.1 2118253 2118753 D hypothetical protein 2118253..2118753 Orientia tsutsugamushi str. Boryong 5219214 YP_001249265.1 CDS pbpA1 NC_009488.1 2118743 2120491 D penicillin-binding protein 2118743..2120491 Orientia tsutsugamushi str. Boryong 5219215 YP_001249266.1 CDS ubiD NC_009488.1 2120648 2122150 R 3-polyprenyl-4-hydroxybenzoate decarboxylase complement(2120648..2122150) Orientia tsutsugamushi str. Boryong 5219216 YP_001249267.1 CDS OTBS_2175 NC_009488.1 2122474 2122896 D hypothetical protein 2122474..2122896 Orientia tsutsugamushi str. Boryong 5219217 YP_001249268.1 CDS ank1u9 NC_009488.1 2124560 2126086 R ankyrin repeat-containing protein complement(2124560..2126086) Orientia tsutsugamushi str. Boryong 5219221 YP_001249269.1 CDS OTBS_2179 NC_009488.1 2126471 2126734 R hypothetical protein complement(2126471..2126734) Orientia tsutsugamushi str. Boryong 5219222 OTBS_t32 tRNA Thr NC_009488.1 116907 116981 D tRNA-Thr 116907..116981 Orientia tsutsugamushi str. Boryong 5218435 OTBS_t06 tRNA Arg NC_009488.1 135694 135770 D tRNA-Arg 135694..135770 Orientia tsutsugamushi str. Boryong 5218461 OTBS_t12 tRNA Gln NC_009488.1 149380 149454 R tRNA-Gln complement(149380..149454) Orientia tsutsugamushi str. Boryong 5218473 OTBS_t24 tRNA Met NC_009488.1 185253 185327 R tRNA-Met complement(185253..185327) Orientia tsutsugamushi str. Boryong 5218522 OTBS_t35 tRNA Trp NC_009488.1 205233 205307 R tRNA-Trp complement(205233..205307) Orientia tsutsugamushi str. Boryong 5218537 OTBS_t22 tRNA Lys NC_009488.1 210495 210570 D tRNA-Lys 210495..210570 Orientia tsutsugamushi str. Boryong 5218545 OTBS_t09 tRNA Asn NC_009488.1 242226 242300 D tRNA-Asn 242226..242300 Orientia tsutsugamushi str. Boryong 5218573 OTBS_t29 tRNA Ser NC_009488.1 327170 327258 D tRNA-Ser 327170..327258 Orientia tsutsugamushi str. Boryong 5218656 OTBS_t14 tRNA Gly NC_009488.1 361540 361613 R tRNA-Gly complement(361540..361613) Orientia tsutsugamushi str. Boryong 5218707 OTBS_t36 tRNA Tyr NC_009488.1 361632 361717 R tRNA-Tyr complement(361632..361717) Orientia tsutsugamushi str. Boryong 5218708 OTBS_t11 tRNA Cys NC_009488.1 381146 381220 D tRNA-Cys 381146..381220 Orientia tsutsugamushi str. Boryong 5218731 OTBS_t16 tRNA His NC_009488.1 415857 415933 R tRNA-His complement(415857..415933) Orientia tsutsugamushi str. Boryong 5218772 OTBS_t18 tRNA Leu NC_009488.1 447829 447918 D tRNA-Leu 447829..447918 Orientia tsutsugamushi str. Boryong 5218802 OTBS_t37 tRNA Val NC_009488.1 506927 507002 R tRNA-Val complement(506927..507002) Orientia tsutsugamushi str. Boryong 5218867 OTBS_t15 tRNA Gly NC_009488.1 507102 507176 R tRNA-Gly complement(507102..507176) Orientia tsutsugamushi str. Boryong 5218868 OTBS_t21 tRNA Leu NC_009488.1 525455 525539 R tRNA-Leu complement(525455..525539) Orientia tsutsugamushi str. Boryong 5218890 OTBS_t34 tRNA Thr NC_009488.1 535633 535707 R tRNA-Thr complement(535633..535707) Orientia tsutsugamushi str. Boryong 5218900 OTBS_t10 tRNA Asp NC_009488.1 639439 639516 R tRNA-Asp complement(639439..639516) Orientia tsutsugamushi str. Boryong 5219246 OTBS_t25 tRNA Met NC_009488.1 823507 823583 R tRNA-Met complement(823507..823583) Orientia tsutsugamushi str. Boryong 5219428 OTBS_t07 tRNA Arg NC_009488.1 1025864 1025940 R tRNA-Arg complement(1025864..1025940) Orientia tsutsugamushi str. Boryong 5219623 OTBS_t30 tRNA Ser NC_009488.1 1090386 1090476 R tRNA-Ser complement(1090386..1090476) Orientia tsutsugamushi str. Boryong 5219697 OTBS_t17 tRNA Ile NC_009488.1 1111946 1112022 R tRNA-Ile complement(1111946..1112022) Orientia tsutsugamushi str. Boryong 5219719 OTBS_t27 tRNA Phe NC_009488.1 1234813 1234887 D tRNA-Phe 1234813..1234887 Orientia tsutsugamushi str. Boryong 5219860 OTBS_t33 tRNA Thr NC_009488.1 1273344 1273419 D tRNA-Thr 1273344..1273419 Orientia tsutsugamushi str. Boryong 5217682 OTBS_t38 tRNA Val NC_009488.1 1377106 1377182 R tRNA-Val complement(1377106..1377182) Orientia tsutsugamushi str. Boryong 5217794 OTBS_t13 tRNA Glu NC_009488.1 1383217 1383291 D tRNA-Glu 1383217..1383291 Orientia tsutsugamushi str. Boryong 5217799 OTBS_t19 tRNA Leu NC_009488.1 1574590 1574675 D tRNA-Leu 1574590..1574675 Orientia tsutsugamushi str. Boryong 5217997 OTBS_t23 tRNA Met NC_009488.1 1595286 1595362 D tRNA-Met 1595286..1595362 Orientia tsutsugamushi str. Boryong 5218026 OTBS_t08 tRNA Arg NC_009488.1 1640004 1640080 R tRNA-Arg complement(1640004..1640080) Orientia tsutsugamushi str. Boryong 5218069 OTBS_t31 tRNA Ser NC_009488.1 1802954 1803046 R tRNA-Ser complement(1802954..1803046) Orientia tsutsugamushi str. Boryong 5218246 OTBS_t04 tRNA Ala NC_009488.1 1856192 1856267 D tRNA-Ala 1856192..1856267 Orientia tsutsugamushi str. Boryong 5218310 OTBS_t20 tRNA Leu NC_009488.1 1975168 1975253 D tRNA-Leu 1975168..1975253 Orientia tsutsugamushi str. Boryong 5219084 OTBS_t28 tRNA Pro NC_009488.1 2064457 2064533 D tRNA-Pro 2064457..2064533 Orientia tsutsugamushi str. Boryong 5219162 OTBS_t05 tRNA Ala NC_009488.1 2123749 2123823 R tRNA-Ala complement(2123749..2123823) Orientia tsutsugamushi str. Boryong 5219220 OTBS_r03 rRNA 5S_rRNA NC_009488.1 334139 334255 R 5S ribosomal RNA complement(334139..334255) Orientia tsutsugamushi str. Boryong 5218666 OTBS_r02 rRNA 23S_rRNA NC_009488.1 334389 337206 R 23S ribosomal RNA complement(334389..337206) Orientia tsutsugamushi str. Boryong 5218667 OTBS_r01 rRNA 16S_rRNA NC_009488.1 1322598 1324120 D 16S ribosomal RNA 1322598..1324120 Orientia tsutsugamushi str. Boryong 5217740