-- dump date   	20250217_001639
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_014734.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002345.1.REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: JapanREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: SoilREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soilREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, JapanREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 4 of 12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 4 of 12 Pseudo Genes (incomplete)         :: 11 of 12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 4 of 12 Pseudo Genes (incomplete)         :: 11 of 12 Pseudo Genes (internal stop)      :: 1 of 12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 4 of 12 Pseudo Genes (incomplete)         :: 11 of 12 Pseudo Genes (internal stop)      :: 1 of 12 Pseudo Genes (multiple problems)  :: 3 of 12REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 4 of 12 Pseudo Genes (incomplete)         :: 11 of 12 Pseudo Genes (internal stop)      :: 1 of 12 Pseudo Genes (multiple problems)  :: 3 of 12 CRISPR Arrays                     :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 4 of 12 Pseudo Genes (incomplete)         :: 11 of 12 Pseudo Genes (internal stop)      :: 1 of 12 Pseudo Genes (multiple problems)  :: 3 of 12 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002345.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4087350 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)           David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Paludibacter propionicigenes WB4, DSM 17365 collection_date     :: Missing lat_lon             :: 38.25222 140.335602 depth               :: Missing alt_elev            :: Missing country             :: Japan environment         :: Soil num_replicons       :: 1 ref_biomaterial     :: DSM 17365, JCM 13257, CCUG 53888 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Anaerobe isol_growth_condt   :: 16403864 sequencing_meth     :: WGS assembly            :: Newbler v. 2.3 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi04614 Type Strain         :: Yes Funding Program     :: DOE-GEBA 2009 Isolation Site      :: Rice plant residue in anoxic rice-field soil                        in Yamagata, Japan Cell Shape          :: Rod-shaped Motility            :: Nonmotile Sporulation         :: Nonsporulating Temperature Range   :: Mesophile Gram Staining       :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000183135.1-RS_2024_03_12 Annotation Date                   :: 03/12/2024 00:46:59 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,018 CDSs (total)                      :: 2,954 Genes (coding)                    :: 2,942 CDSs (with protein)               :: 2,942 Genes (RNA)                       :: 64 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 52 ncRNAs                            :: 3 Pseudo Genes (total)              :: 12 CDSs (without protein)            :: 12 Pseudo Genes (ambiguous residues) :: 0 of 12 Pseudo Genes (frameshifted)       :: 4 of 12 Pseudo Genes (incomplete)         :: 11 of 12 Pseudo Genes (internal stop)      :: 1 of 12 Pseudo Genes (multiple problems)  :: 3 of 12 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.