-- dump date   	20240506_002322
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_014117.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002013.1.REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-RomeroREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx)REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolateREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604,REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in PhaseolusREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics.REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizingREFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002013.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## COMPLETENESS: full length.
NC_014118.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002014.1.REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-RomeroREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx)REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolateREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604,REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in PhaseolusREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics.REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizingREFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002014.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## COMPLETENESS: full length.
NC_014119.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002015.1.REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-RomeroREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx)REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolateREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604,REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in PhaseolusREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics.REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizingREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002015.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## COMPLETENESS: full length.
NC_014120.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002016.1.REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-RomeroREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx)REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolateREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604,REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in PhaseolusREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics.REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizingREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002016.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085555 Source DNA and organism available from Esperanza Martinez-Romero (Centro de Ciencias Genomicas--http://ccg.unam.mx) Contacts: James M. Tiedje (tiedjej@msu.edu)      Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Burkholderia sp. CCGE1002 is a mimosa occidentalis nodule isolate from Nayarit, Tepic, Mexico. Site of isolation is Latitude: 21.604, Longitude: -104.952. Additionally, it forms nodules in Phaseolus vulgaris beans. It contributes to Nitrogen fixation and CO2 fixation in the tropics. Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Burkholderia sp. CCGE1002 GOLD Stamp ID         :: Gi03922 Oxygen Requirement    :: Facultative Cell Shape            :: Rod-shaped Motility              :: Motile Sporulation           :: Nonsporulating Temperature Range     :: Mesophile Gram Staining         :: gram- Biotic Relationship   :: Free living Habitat               :: Host, Rhizosphere, Rhizosphere-colonizing ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000092885.1-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:42:37 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 7,281 CDSs (total)                      :: 7,182 Genes (coding)                    :: 6,903 CDSs (with protein)               :: 6,903 Genes (RNA)                       :: 99 rRNAs                             :: 7, 7, 7 (5S, 16S, 23S) complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S) tRNAs                             :: 74 ncRNAs                            :: 4 Pseudo Genes (total)              :: 279 CDSs (without protein)            :: 279 Pseudo Genes (ambiguous residues) :: 0 of 279 Pseudo Genes (frameshifted)       :: 133 of 279 Pseudo Genes (incomplete)         :: 210 of 279 Pseudo Genes (internal stop)      :: 39 of 279 Pseudo Genes (multiple problems)  :: 93 of 279 ##Genome-Annotation-Data-END## COMPLETENESS: full length.