-- dump date   	20240506_000641
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_009719.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP000774.1.REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David SchleheckREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966.REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewageREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1),REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in theREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). ParvibaculumREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterialREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners ofREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). TheREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [ComamonasREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition,REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic andREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generatesREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents theREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degradingREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities.REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-StanfordREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted)       :: 9 of 24REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted)       :: 9 of 24 Pseudo Genes (incomplete)         :: 13 of 24REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted)       :: 9 of 24 Pseudo Genes (incomplete)         :: 13 of 24 Pseudo Genes (internal stop)      :: 4 of 24REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted)       :: 9 of 24 Pseudo Genes (incomplete)         :: 13 of 24 Pseudo Genes (internal stop)      :: 4 of 24 Pseudo Genes (multiple problems)  :: 2 of 24REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted)       :: 9 of 24 Pseudo Genes (incomplete)         :: 13 of 24 Pseudo Genes (internal stop)      :: 4 of 24 Pseudo Genes (multiple problems)  :: 2 of 24 CRISPR Arrays                     :: 1REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted)       :: 9 of 24 Pseudo Genes (incomplete)         :: 13 of 24 Pseudo Genes (internal stop)      :: 4 of 24 Pseudo Genes (multiple problems)  :: 2 of 24 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP000774.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4003071 Source DNA available from David Schleheck (david.schleheck@unsw.edu.au) Bacteria available from DSMZ or NCIMB: DSM 13023 = NCIMB 13966. Parvibaculum lavamentivorans DS-1 was enriched from a sewage treatment plant in Germany, was difficult to isolate (reference 1), and is the first representative of a novel genus in the alpha-subclass of Proteobacteria (reference 5). Parvibaculum lavamentivorans DS-1 is part of a defined three-member bacterial community which completely mineralises representative congeners of linear alkylbenzenesulfonate surfactants (reference 4). The community genome was established by DOE-JGI as part of the 2006 Microbes Program (see also JGI Project Id 4002763 [Comamonas testosteroni] and 4002762 [Delftia acidovorans]).  In addition, strain DS-1 catalyses the degradation of 16 other anionic and non-ionic commercial surfactants (reference 5), and generates degradation intermediates thereof. The organism thus represents the first tier of many environmentally important surfactant-degrading communities. Contacts: David Schleheck (david.schleheck@unsw.edu.au)           Staffan Kjelleberg (kjelleberg@unsw.edu.au)           Alasdair Cook (alasdair.cook@uni-konstanz.de)           Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Date                   :: 05/02/2023 01:23:38 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.5 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 3,731 CDSs (total)                      :: 3,679 Genes (coding)                    :: 3,655 CDSs (with protein)               :: 3,655 Genes (RNA)                       :: 52 rRNAs                             :: 1, 1, 1 (5S, 16S, 23S) complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S) tRNAs                             :: 45 ncRNAs                            :: 4 Pseudo Genes (total)              :: 24 CDSs (without protein)            :: 24 Pseudo Genes (ambiguous residues) :: 0 of 24 Pseudo Genes (frameshifted)       :: 9 of 24 Pseudo Genes (incomplete)         :: 13 of 24 Pseudo Genes (internal stop)      :: 4 of 24 Pseudo Genes (multiple problems)  :: 2 of 24 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.