-- dump date 20140619_231547 -- class Genbank::CDS -- table cds_note -- id note YP_001411281.1 PFAM: ribosomal protein S20; KEGG: mes:Meso_4102 ribosomal protein S20 YP_001411282.1 SMART: Rhodanese domain protein; KEGG: mag:amb2208 rhodanese-related sulfurtransferase YP_001411283.1 TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: mag:amb0636 ATPase YP_001411284.1 binds the polymerase to DNA and acts as a sliding clamp YP_001411285.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: mes:Meso_0003 DNA replication and repair protein RecF YP_001411286.1 PFAM: peptidase S14 ClpP; KEGG: hne:HNE_0542 putative ATP-dependent Clp protease, proteolytic subunit ClpP YP_001411287.1 KEGG: mes:Meso_3603 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_001411288.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bja:bll0910 penicillin-binding protein YP_001411289.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: maq:Maqu_3797 drug resistance transporter, Bcr/CflA subfamily YP_001411290.1 PFAM: protein of unknown function DUF45; KEGG: rru:Rru_A3354 protein of unknown function DUF45 YP_001411291.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rme:Rmet_4906 glyoxalase/bleomycin resistance protein/dioxygenase YP_001411292.1 TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rpd:RPD_0126 polyhydroxyalkanoate depolymerase, intracellular YP_001411293.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: bxe:Bxe_A1435 yeast 2-isopropylmalate synthase YP_001411294.1 PFAM: electron transport protein SCO1/SenC; KEGG: rru:Rru_A3360 electron transport protein SCO1/SenC YP_001411295.1 PFAM: Ankyrin; KEGG: sru:SRU_2404 hypothetical protein YP_001411296.1 KEGG: ftw:FTW_2008 hypothetical protein YP_001411297.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bmb:BruAb1_0130 sensor histidine kinase YP_001411298.1 PFAM: response regulator receiver; KEGG: mes:Meso_4041 response regulator receiver protein YP_001411299.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_1216 plasmid maintenance system antidote protein, XRE family YP_001411300.1 PFAM: plasmid maintenance system killer; KEGG: rpc:RPC_4140 plasmid maintenance system killer YP_001411301.1 PFAM: protein of unknown function DUF1052; KEGG: hypothetical protein YP_001411302.1 PFAM: aminoglycoside phosphotransferase; KEGG: mxa:MXAN_0104 aminoglycoside phosphotransferase family protein YP_001411303.1 KEGG: abo:ABO_1416 hypothetical protein YP_001411304.1 KEGG: rru:Rru_A3761 hypothetical protein YP_001411305.1 PFAM: cytochrome P450; KEGG: cytochrome P450 family protein YP_001411306.1 KEGG: hypothetical protein YP_001411307.1 KEGG: azo:azo2253 probable exporter of RND superfamily YP_001411308.1 PFAM: Sterol desaturase; KEGG: atc:AGR_C_556 hypothetical protein YP_001411309.1 PFAM: cytochrome P450; KEGG: aci:ACIAD1575 linalool 8-monooxygenase (cytochrome P450 111) (cytochrome P450lin) YP_001411310.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hydrolase, haloacid dehalogenase-like family; K07025 putative hydrolase of the HAD superfamily YP_001411311.1 PFAM: Sporulation domain protein; KEGG: rpe:RPE_2692 sporulation domain protein YP_001411312.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nar:Saro_3065 cobyrinic acid a,c-diamide synthase YP_001411313.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: gox:GOX0719 adenosylmethionine--8-amino-7-oxononanoate transaminase YP_001411314.1 KEGG: mxa:MXAN_0975 hypothetical protein YP_001411315.1 KEGG: hypothetical protein YP_001411316.1 KEGG: sde:Sde_3139 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_001411317.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: mmr:Mmar10_1675 2OG-Fe(II) oxygenase YP_001411318.1 KEGG: mmr:Mmar10_1676 hypothetical protein YP_001411319.1 TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; KEGG: acr:Acry_1868 8-amino-7-oxononanoate synthase YP_001411320.1 TIGRFAM: dethiobiotin synthase; KEGG: acr:Acry_1867 dethiobiotin synthase YP_001411321.1 KEGG: ftn:FTN_0314 hypothetical protein YP_001411322.1 KEGG: rfr:Rfer_1454 hypothetical protein YP_001411323.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: mac:MA4322 methylated-DNA-[protein]-cysteine S-methyltransferase YP_001411324.1 PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: rru:Rru_A3357 transcriptional regulator, AraC family YP_001411325.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: pat:Patl_3455 major facilitator superfamily MFS_1 YP_001411326.1 TIGRFAM: Alcohol dehydrogenase zinc-binding type 2; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_0056 alcohol dehydrogenase GroES-like protein YP_001411327.1 KEGG: psa:PST_4027 phosphate ABC transporter, periplasmic phosphate-binding protein YP_001411328.1 PFAM: phosphate-selective porin O and P; KEGG: bja:blr5369 outer membrane porin YP_001411329.1 PFAM: OsmC family protein; KEGG: sme:SMa1898 putative redox protein YP_001411330.1 PFAM: PRC-barrel domain protein; KEGG: hne:HNE_2890 hypothetical protein YP_001411331.1 PFAM: histidine kinase HAMP region domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: rsh:Rsph17029_2929 signal transduction histidine kinase YP_001411332.1 in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media YP_001411333.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: swi:Swit_3924 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001411335.1 PFAM: CsbD family protein; KEGG: mlo:msl9551 hypothetical protein YP_001411336.1 PFAM: protein of unknown function DUF1328; KEGG: mes:Meso_3110 protein of unknown function DUF1328 YP_001411337.1 PFAM: Entericidin EcnAB; KEGG: hypothetical protein YP_001411338.1 PFAM: MgtC/SapB transporter; KEGG: mes:Meso_3446 MgtC/SapB transporter YP_001411340.1 KEGG: azo:azo1749 conserved hypothetical membrane protein YP_001411341.1 PFAM: MOSC domain containing protein; KEGG: rpe:RPE_1637 MOSC domain containing protein YP_001411342.1 KEGG: rpb:RPB_0921 hypothetical protein YP_001411344.1 PFAM: response regulator receiver; KEGG: mgi:Mflv_1744 two component transcriptional regulator, winged helix family YP_001411345.1 PFAM: response regulator receiver; KEGG: sbl:Sbal_2050 two component transcriptional regulator, winged helix family YP_001411346.1 KEGG: nwi:Nwi_2535 hypothetical protein YP_001411347.1 KEGG: bch:Bcen2424_6766 PE-PGRS family protein YP_001411348.1 PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: bcn:Bcen_1034 polypeptide-transport-associated, ShlB-type YP_001411349.1 PFAM: SAF domain protein; KEGG: bcn:Bcen_1040 Flp pilus assembly CpaB YP_001411350.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: swi:Swit_3514 type II and III secretion system protein YP_001411351.1 PFAM: response regulator receiver; KEGG: rme:Rmet_3655 response regulator receiver domain protein (CheY-like) YP_001411352.1 PFAM: type II secretion system protein E; KEGG: swi:Swit_3512 type II secretion system protein E YP_001411353.1 PFAM: type II secretion system protein; KEGG: swi:Swit_3511 type II secretion system protein YP_001411354.1 PFAM: type II secretion system protein; KEGG: swi:Swit_3510 type II secretion system protein YP_001411355.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bam:Bamb_1408 tetratricopeptide TPR_2 repeat protein YP_001411357.1 PFAM: Flp/Fap pilin component; KEGG: rpd:RPD_3517 Flp/Fap pilin component YP_001411358.1 PFAM: TadE family protein; KEGG: nca:Noca_3251 TadE family protein YP_001411359.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: psp:PSPPH_4416 sensory box histidine kinase YP_001411360.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gox:GOX1600 two component response regulator YP_001411362.1 PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein YP_001411363.1 KEGG: pmy:Pmen_3653 metal-dependent hydrolase-like protein YP_001411364.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: pau:PA14_53520 transcriptional regulator OruR YP_001411365.1 KEGG: bxe:Bxe_A2804 putative membrane protein, glycine-rich YP_001411366.1 KEGG: bam:Bamb_1398 hypothetical protein YP_001411367.1 PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_13130 hypothetical protein YP_001411368.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2401 transcriptional regulator, TetR family YP_001411369.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hne:HNE_2119 aryl-alcohol dehydrogenase YP_001411370.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001411371.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: transcriptional regulator, putative YP_001411372.1 PFAM: aldehyde dehydrogenase; KEGG: bbt:BBta_3845 putative aldehyde dehydrogenase family protein YP_001411373.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase domain protein transmembrane component domain; KEGG: pfl:PFL_2917 oxidoreductase, FAD-binding YP_001411374.1 PFAM: protein of unknown function DUF454; KEGG: sal:Sala_1520 protein of unknown function DUF454 YP_001411375.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001411376.1 TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: zmo:ZMO1681 aspartate:alanine antiporter YP_001411377.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: bfs:BF3950 hypothetical protein YP_001411378.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: bfs:BF3951 hypothetical protein YP_001411379.1 TIGRFAM: CRISPR-associated protein, Csn1 family; KEGG: vei:Veis_1230 CRISPR-associated protein, Csn1 family YP_001411380.1 KEGG: deb:DehaBAV1_0084 hypothetical protein YP_001411382.1 PFAM: Resolvase domain; Recombinase; KEGG: nha:Nham_0568 recombinase YP_001411383.1 PFAM: protein of unknown function DUF1457; KEGG: sme:SMc01000 hypothetical protein YP_001411384.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hne:HNE_1881 ABC transporter, ATP-binding protein YP_001411385.1 KEGG: bme:BMEI1825 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_001411386.1 KEGG: mes:Meso_2799 hypothetical protein YP_001411387.1 KEGG: pau:PA14_14140 hypothetical protein YP_001411388.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: mlo:mlr3764 transcriptional regulator(repressor protein) YP_001411389.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_001411390.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_2289 peptidase, M20E (Gly-X carboxypeptidase) subfamily YP_001411391.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mes:Meso_3571 two component transcriptional regulator, winged helix family YP_001411392.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sme:SMc04446 histidine kinase sensory transmembrane protein YP_001411393.1 KEGG: rru:Rru_A3449 HPr kinase YP_001411394.1 PFAM: PTS system fructose subfamily IIA component; KEGG: mag:amb4395 phosphotransferase system, mannose/fructose-specific component IIA YP_001411395.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: bov:BOV_2014 phosphocarrier protein HPr YP_001411396.1 KEGG: rme:Rmet_0145 hypothetical protein YP_001411397.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_001411398.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; KEGG: nha:Nham_0053 PAS/PAC sensor signal transduction histidine kinase YP_001411399.1 KEGG: rpc:RPC_0601 hypothetical protein YP_001411401.1 KEGG: pol:Bpro_3007 glutathione S-transferase-like YP_001411402.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: superoxide dismutase, Cu-Zn YP_001411403.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rso:RSc1890 probable isoquinoline 1-oxidoreductase (alpha subunit) oxidoreductase protein YP_001411404.1 PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: eli:ELI_11225 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_001411406.1 PFAM: ferredoxin; KEGG: ferredoxin, 2Fe-2S; K04755 ferredoxin, 2Fe-2S YP_001411407.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_5300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001411408.1 KEGG: sit:TM1040_3368 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway)-like YP_001411409.1 KEGG: mjl:Mjls_2634 hypothetical protein YP_001411410.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0589 putative short-chain dehydrogenase/reductase YP_001411411.1 PFAM: monooxygenase FAD-binding; KEGG: rha:RHA1_ro10313 probable 2,4-dichlorophenol 6-monooxygenase YP_001411412.1 PFAM: regulatory protein TetR; KEGG: mlo:mll2397 probable transcriptional regulator YP_001411413.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rpa:RPA1115 hypothetical protein YP_001411414.1 PFAM: protein of unknown function UPF0079; KEGG: bmb:BruAb1_2075 conserved hypothetical protein TIGR00150 YP_001411415.1 PFAM: aminoglycoside phosphotransferase; KEGG: atc:AGR_C_43 unknown YP_001411416.1 PFAM: Nucleotidyl transferase; KEGG: bja:bll0754 nucleotidyltransferase family protein YP_001411417.1 TIGRFAM: Double-strand break repair protein AddB; KEGG: mag:amb0421 inactivated superfamily I helicase YP_001411418.1 TIGRFAM: Double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: mag:amb4162 ATP-dependent exoDNAse beta subunit YP_001411419.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mag:amb4286 thiol-disulfide isomerase and thioredoxins YP_001411420.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rsh:Rsph17029_2589 FolC bifunctional protein YP_001411421.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: rpb:RPB_0633 acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_001411422.1 TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; KEGG: rpe:RPE_0455 tryptophan synthase, alpha subunit YP_001411423.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001411424.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rpa:RPA0068 putative N-(5'-phosphoribosyl)anthranilate isomerase YP_001411425.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: rru:Rru_A3424 orotidine-5'-phosphate decarboxylase YP_001411426.1 KEGG: bbt:BBta_0099 putative exported protein of unknown function YP_001411427.1 TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: mag:amb4004 bacterial nucleoid DNA-binding protein YP_001411428.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: rpc:RPC_0396 signal peptide peptidase SppA, 36K type YP_001411429.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001411430.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: rpa:RPA0063 cytidylate monophosphate kinase YP_001411431.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: rsh:Rsph17029_3277 3-phosphoshikimate 1-carboxyvinyltransferase YP_001411432.1 KEGG: bov:BOV_0023 hypothetical protein YP_001411433.1 PFAM: regulatory protein TetR; KEGG: pol:Bpro_3836 transcriptional regulator, TetR family YP_001411434.1 PFAM: AMP-dependent synthetase and ligase; KEGG: msm:MSMEG_4065 feruloyl-CoA synthetase YP_001411435.1 PFAM: Thiolase; KEGG: rme:Rmet_5826 thiolase YP_001411436.1 KEGG: rpd:RPD_3813 hypothetical protein YP_001411437.1 PFAM: MaoC domain protein dehydratase; KEGG: rpa:RPA3303 MaoC-like dehydratase YP_001411438.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpb:RPB_4075 3-oxoacyl-acyl carrier protein reductase YP_001411439.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rrs:RoseRS_0979 Rieske (2Fe-2S) domain protein YP_001411440.1 PFAM: regulatory protein LuxR; KEGG: pfl:PFL_3468 transcriptional regulator, LuxR family YP_001411441.1 PFAM: aminotransferase class-III; KEGG: cps:CPS_2054 hypothetical protein YP_001411442.1 PFAM: protein of unknown function DUF1302; KEGG: azo:azo2254 conserved hypothetical secreted protein YP_001411443.1 PFAM: protein of unknown function DUF1329; KEGG: reh:H16_A0834 hypothetical protein YP_001411444.1 PFAM: major facilitator superfamily MFS_1; KEGG: swi:Swit_4805 hypothetical protein YP_001411445.1 PFAM: Amidase; KEGG: rsp:RSP_3526 amidase YP_001411446.1 PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr6969 aldehyde dehydrogenase YP_001411447.1 KEGG: nar:Saro_2604 major facilitator superfamily MFS_1 YP_001411448.1 PFAM: DSBA oxidoreductase; KEGG: sil:SPO1494 2-hydroxychromene-2-carboxylate isomerase, putative YP_001411449.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bam:Bamb_4305 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase YP_001411450.1 PFAM: acriflavin resistance protein; KEGG: mmr:Mmar10_2625 acriflavin resistance protein YP_001411451.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mmr:Mmar10_2624 efflux transporter, RND family, MFP subunit YP_001411452.1 PFAM: transcriptional regulator PadR family protein; KEGG: smu:SMU.1604c hypothetical protein YP_001411453.1 KEGG: nha:Nham_2663 hypothetical protein YP_001411454.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_001411455.1 PFAM: acriflavin resistance protein; KEGG: saz:Sama_1905 AcrB/AcrD/AcrF family protein YP_001411456.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: csa:Csal_1440 secretion protein HlyD YP_001411457.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1198 binding-protein-dependent transport systems inner membrane component YP_001411458.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rru:Rru_A0767 ABC transporter component YP_001411459.1 PFAM: extracellular solute-binding protein family 1; KEGG: csa:Csal_0549 extracellular solute-binding protein, family 1 YP_001411460.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gvi:gll0578 hemin ABC transporter ATP binding protein YP_001411461.1 PFAM: transport system permease protein; KEGG: jan:Jann_2135 transport system permease protein YP_001411462.1 PFAM: periplasmic binding protein; KEGG: gvi:gll0580 hemin-binding periplasmic protein YP_001411463.1 PFAM: Haemin-degrading family protein; KEGG: mxa:MXAN_1318 hemin transport protein HemS YP_001411464.1 TIGRFAM: TonB family protein; KEGG: psb:Psyr_4480 TonB, C-terminal YP_001411465.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2153 outer membrane heme receptor YP_001411467.1 PFAM: manganese and iron superoxide dismutase; KEGG: mmr:Mmar10_1895 superoxide dismutase YP_001411468.1 PFAM: heat shock protein Hsp20; KEGG: rpa:RPA0054 putative small heat shock protein YP_001411469.1 PFAM: protein of unknown function DUF1150; KEGG: hypothetical protein YP_001411470.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: rru:Rru_A0009 PTS IIA-like nitrogen-regulatory protein PtsN YP_001411471.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: hne:HNE_3290 hypothetical protein YP_001411472.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: bbt:BBta_0121 RNA polymerase sigma-54 factor YP_001411473.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb3936 ABC-type (unclassified) transport system, ATPase component YP_001411474.1 TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA family protein; KEGG: rpa:RPA0048 hypothetical protein YP_001411475.1 PFAM: protein of unknown function DUF1239; KEGG: bja:blr0720 hypothetical protein YP_001411476.1 PFAM: 3'-5' exonuclease; KEGG: rpb:RPB_0659 3'-5' exonuclease YP_001411477.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: rpe:RPE_0505 NAD-dependent epimerase/dehydratase YP_001411478.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: bmb:BruAb1_0216 transcriptional regulator, MerR family YP_001411479.1 PFAM: Glutathione S-transferase domain; KEGG: mag:amb3942 glutathione S-transferase YP_001411480.1 PFAM: HEAT domain containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: mlo:mlr4636 iron-sulfur cluster binding protein YP_001411481.1 SMART: Tetratricopeptide domain protein; KEGG: gbe:GbCGDNIH1_0706 tetratricopeptide repeat family protein YP_001411482.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: rsq:Rsph17025_2793 NAD-dependent epimerase/dehydratase YP_001411483.1 KEGG: rpc:RPC_3825 hypothetical protein YP_001411484.1 PFAM: alpha/beta hydrolase fold; KEGG: rpb:RPB_0067 hypothetical protein YP_001411485.1 PFAM: glycosyl transferase group 1; KEGG: hne:HNE_0425 glycosyl transferase, group 1 family protein YP_001411487.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: translation initiation factor IF-3; K02520 translation initiation factor IF-3 YP_001411488.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: acr:Acry_0560 glycerophosphoryl diester phosphodiesterase YP_001411490.1 PFAM: luciferase family protein; KEGG: bja:bll7033 LuxA-like protein YP_001411491.1 PFAM: regulatory protein MarR; KEGG: ade:Adeh_2919 transcriptional regulator, MarR family YP_001411492.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: rpa:RPA0441 hypothetical protein YP_001411494.1 KEGG: swi:Swit_4579 hypothetical protein YP_001411495.1 KEGG: bja:bll2250 hypothetical protein YP_001411496.1 KEGG: gur:Gura_1251 hypothetical protein YP_001411497.1 PFAM: Post-segregation antitoxin CcdA; KEGG: gur:Gura_1252 post-segregation antitoxin CcdA YP_001411498.1 PFAM: ribosomal protein L35; KEGG: ret:RHE_CH00261 50S ribosomal protein L35 YP_001411499.1 TIGRFAM: ribosomal protein L20; KEGG: mes:Meso_0674 ribosomal protein L20 YP_001411500.1 TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: nwi:Nwi_0066 phenylalanyl-tRNA synthetase, alpha subunit YP_001411501.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: mes:Meso_0677 phenylalanyl-tRNA synthetase, beta subunit YP_001411502.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reh:H16_B1741 enoyl-CoA hydratase YP_001411503.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001411504.1 KEGG: rpb:RPB_4710 hypothetical protein YP_001411505.1 PFAM: TadE family protein; KEGG: hne:HNE_3020 Flp/Fap pilin component YP_001411506.1 PFAM: TadE family protein; KEGG: mmr:Mmar10_0414 TadE family protein YP_001411507.1 PFAM: von Willebrand factor type A; KEGG: rpa:RPA3149 hypothetical protein YP_001411508.1 KEGG: bja:blr1444 hypothetical protein YP_001411509.1 PFAM: cyclic nucleotide-binding; KEGG: mag:amb3736 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase YP_001411510.1 PFAM: Flp/Fap pilin component; KEGG: bja:bsl7141 components of type IV pilus pilin subunit YP_001411511.1 PFAM: peptidase A24A prepilin type IV; KEGG: rpa:RPA3676 putative type IV prepilin peptidase, cpaA YP_001411512.1 PFAM: SAF domain protein; KEGG: rpd:RPD_3519 Flp pilus assembly CpaB YP_001411513.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: mmr:Mmar10_0419 type II and III secretion system protein YP_001411514.1 TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: ret:RHE_CH00206 pilus assembly protein YP_001411515.1 KEGG: mmr:Mmar10_0421 response regulator receiver protein YP_001411516.1 PFAM: type II secretion system protein E; KEGG: rpb:RPB_1781 type II secretion system protein E YP_001411517.1 PFAM: type II secretion system protein; KEGG: rpc:RPC_3717 type II secretion system protein YP_001411518.1 PFAM: type II secretion system protein; KEGG: mmr:Mmar10_0424 type II secretion system protein YP_001411519.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rle:RL0221 hypothetical protein atu0215 (agr_c_369p) YP_001411520.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mag:amb4102 TRAP-type uncharacterized transport system, periplasmic component YP_001411521.1 KEGG: bte:BTH_I0235 glutathione S-transferase, N-terminal domain protein YP_001411522.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: bov:BOV_2093 cytosol aminopeptidase family protein YP_001411523.1 PFAM: regulatory protein MarR; KEGG: mag:amb4246 transcriptional regulator YP_001411524.1 PFAM: NLP/P60 protein; KEGG: rpd:RPD_3528 NLP/P60 YP_001411525.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: mes:Meso_4080 ABC transporter related YP_001411526.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_7052 putative oligopeptide transport protein (ABC superfamily, membrane) YP_001411527.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0290 binding-protein-dependent transport systems inner membrane component YP_001411528.1 PFAM: extracellular solute-binding protein family 5; KEGG: rpe:RPE_3766 extracellular solute-binding protein, family 5 YP_001411529.1 PFAM: extracellular solute-binding protein family 5; KEGG: nwi:Nwi_0288 extracellular solute-binding protein, family 5 YP_001411530.1 PFAM: cytochrome c class I; KEGG: rpd:RPD_3536 cytochrome c, class I YP_001411531.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_001411532.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: bbt:BBta_7058 chorismate mutase/prephenate dehydratase YP_001411534.1 PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: MutT/NUDIX family protein YP_001411535.1 KEGG: nha:Nham_0462 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_001411536.1 PFAM: conserved hypothetical protein; KEGG: rpb:RPB_0667 hypothetical protein YP_001411537.1 KEGG: pfo:Pfl_3049 hypothetical protein YP_001411538.1 TIGRFAM: recombination protein RecR; PFAM: RecR protein; TOPRIM domain protein; KEGG: mlo:mlr5510 recombination protein recR YP_001411539.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: maq:Maqu_0255 amino acid carrier protein YP_001411540.1 PFAM: protein of unknown function DUF195; KEGG: rru:Rru_A3348 protein of unknown function DUF195 YP_001411541.1 TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: hne:HNE_0512 peptide deformylase YP_001411542.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: bmb:BruAb2_0974 Fmt, methionyl-tRNA formyltransferase YP_001411543.1 TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: nwi:Nwi_3066 tRNA pseudouridine synthase A YP_001411544.1 TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; KEGG: dde:Dde_2743 glutamate racemase YP_001411545.1 KEGG: rru:Rru_A3481 hypothetical protein YP_001411546.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_001411547.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; KEGG: atc:AGR_C_648 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase YP_001411548.1 PFAM: EAL domain protein; KEGG: hypothetical protein YP_001411549.1 PFAM: peptidase U34 dipeptidase; KEGG: nca:Noca_0390 peptidase U34, dipeptidase YP_001411550.1 PFAM: glutathione peroxidase; KEGG: rru:Rru_A1863 glutathione peroxidase YP_001411551.1 PFAM: DinB family protein; KEGG: acr:Acry_1562 DinB family protein YP_001411552.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: mes:Meso_1262 OmpA/MotB YP_001411553.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_3206 short-chain dehydrogenase/reductase SDR YP_001411554.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rru:Rru_A3458 GCN5-related N-acetyltransferase YP_001411555.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oxidoreductase, short-chain dehydrogenase/reductase family YP_001411556.1 PFAM: beta-lactamase domain protein; KEGG: reu:Reut_C6079 beta-lactamase-like YP_001411557.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: csa:Csal_2087 transcriptional regulator, XRE family with cupin sensor protein YP_001411558.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate YP_001411560.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: swi:Swit_1041 hypothetical protein YP_001411561.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: hypothetical protein YP_001411562.1 PFAM: regulatory protein MarR; KEGG: sal:Sala_1768 transcriptional regulator, MarR family YP_001411563.1 KEGG: ava:Ava_4757 putative methylisocitrate lyase YP_001411564.1 PFAM: thioesterase superfamily protein; KEGG: hne:HNE_0832 thioesterase family protein YP_001411565.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: rpe:RPE_2281 excinuclease ABC, C subunit domain protein YP_001411566.1 PFAM: extracellular solute-binding protein family 3; KEGG: pau:PA14_19140 cyclohexadienyl dehydratase YP_001411567.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pde:Pden_3612 isoleucyl-tRNA synthetase YP_001411568.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: rpb:RPB_4181 lipoprotein signal peptidase YP_001411569.1 KEGG: rru:Rru_A2968 hypothetical protein YP_001411570.1 PFAM: peptidase M16 domain protein; KEGG: rru:Rru_A2972 peptidase M16-like YP_001411571.1 PFAM: peptidase M16 domain protein; KEGG: mag:amb0838 predicted Zn-dependent peptidase YP_001411572.1 PFAM: phosphoglucose isomerase (PGI); KEGG: rxy:Rxyl_2677 glucose-6-phosphate isomerase YP_001411573.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001411574.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; pyrimidine 5'-nucleotidase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: nwi:Nwi_3070 pyrimidine 5-nucleotidase YP_001411575.1 KEGG: mag:amb3893 hypothetical protein YP_001411576.1 PFAM: Peptidoglycan-binding domain 1 protein; protein of unknown function DUF1036; KEGG: bja:blr8102 hypothetical protein YP_001411577.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mlo:mlr4826 acetylglutamate kinase YP_001411578.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001411579.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: rpa:RPA0632 60 kDa inner membrane protein YP_001411580.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: ribonuclease P protein component YP_001411581.1 PFAM: ribosomal protein L34; KEGG: acr:Acry_2138 ribosomal protein L34 YP_001411582.1 PFAM: protein of unknown function DUF547; KEGG: lpp:lpp2805 hypothetical protein YP_001411583.1 PFAM: SNARE associated Golgi protein; KEGG: lpc:LPC_0984 mercuric reductase YP_001411584.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: jan:Jann_0645 pyridine nucleotide-disulphide oxidoreductase dimerisation protein YP_001411585.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpc:RPC_0820 periplasmic sensor signal transduction histidine kinase YP_001411586.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; KEGG: bxe:Bxe_A1241 trehalose-phosphatase YP_001411587.1 PFAM: glycoside hydrolase 15-related; KEGG: mes:Meso_1528 glycoside hydrolase 15-related YP_001411588.1 PFAM: glycosyl transferase family 20; KEGG: bam:Bamb_3873 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_001411589.1 TIGRFAM: glucokinase; PFAM: Glucokinase; KEGG: nwi:Nwi_1025 glucokinase YP_001411590.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: vpa:VP3011 gamma-glutamyltranspeptidase YP_001411591.1 PFAM: peptidase S58 DmpA; KEGG: mmr:Mmar10_0463 peptidase S58, DmpA YP_001411592.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rpe:RPE_0699 filamentation induced by cAMP protein Fic YP_001411593.1 KEGG: rpe:RPE_0700 hypothetical protein YP_001411594.1 KEGG: hch:HCH_06379 hypothetical protein YP_001411595.1 PFAM: ParB domain protein nuclease; KEGG: swi:Swit_3672 ParB domain protein nuclease YP_001411597.1 KEGG: eba:ebA2442 hypothetical protein YP_001411598.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: gur:Gura_2212 UBA/ThiF-type NAD/FAD binding protein YP_001411599.1 KEGG: rme:Rmet_3041 hypothetical protein YP_001411600.1 PFAM: Resolvase domain; Recombinase; KEGG: nwi:Nwi_1250 resolvase YP_001411601.1 KEGG: hch:HCH_06391 hypothetical protein YP_001411602.1 PFAM: helix-turn-helix domain protein YP_001411604.1 KEGG: mag:amb3705 hypothetical protein YP_001411607.1 PFAM: Phosphoglycerate mutase; KEGG: gbe:GbCGDNIH1_2315 phosphoglycerate mutase family protein YP_001411608.1 KEGG: sco:SCO2312 secreted protein YP_001411609.1 KEGG: pai:PAE3049 phosphoribosyl transferase YP_001411610.1 PFAM: integrase family protein; KEGG: jan:Jann_1536 phage integrase YP_001411611.1 KEGG: rpe:RPE_1559 hypothetical protein YP_001411612.1 PFAM: FRG domain protein; KEGG: rpe:RPE_1558 hypothetical protein YP_001411613.1 KEGG: mlo:mll6424 hypothetical protein YP_001411615.1 PFAM: ExsB family protein; KEGG: mlo:mll6423 hypothetical protein YP_001411616.1 PFAM: nucleoside 2-deoxyribosyltransferase; KEGG: mlo:mll6424 hypothetical protein YP_001411618.1 KEGG: mlo:mll6426 hypothetical protein YP_001411620.1 PFAM: Prophage CP4-57 regulatory YP_001411621.1 KEGG: sil:SPO1229 hypothetical protein YP_001411622.1 KEGG: sil:SPO1230 hypothetical protein YP_001411623.1 KEGG: sil:SPO1231 hypothetical protein YP_001411624.1 KEGG: swi:Swit_5040 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_001411626.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: maq:Maqu_0126 copper-resistance protein, CopA family YP_001411627.1 PFAM: copper resistance B precursor; KEGG: ppf:Pput_0013 copper resistance B precursor YP_001411628.1 PFAM: blue (type 1) copper domain protein; KEGG: pfo:Pfl_3854 uncharacterized copper-binding protein YP_001411629.1 KEGG: mmr:Mmar10_0207 hypothetical protein YP_001411630.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: mes:Meso_3876 heavy metal translocating P-type ATPase YP_001411631.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mes:Meso_3879 beta-lactamase-like YP_001411632.1 KEGG: rfr:Rfer_0425 hypothetical protein YP_001411634.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: psa:PST_3362 heavy metal RND efflux membrane fusion protein, CzcB family YP_001411635.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4404 heavy metal efflux pump CzcA YP_001411636.1 PFAM: Rhodanese domain protein; KEGG: bmn:BMA10247_A0425 transcriptional regulator, ArsR family YP_001411637.1 PFAM: integrase family protein; KEGG: sil:SPO1219 site-specific recombinase, phage integrase family YP_001411638.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; HWE histidine kinase; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sme:SMa0113 putative sensory transduction histidine kinase YP_001411639.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: sal:Sala_0110 acetyl-CoA C-acyltransferase YP_001411640.1 PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein YP_001411641.1 KEGG: sal:Sala_0301 putative transcriptional regulator, TetR family YP_001411642.1 KEGG: hne:HNE_1664 hypothetical protein YP_001411643.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: bja:blr2606 2-nitropropane dioxygenase YP_001411645.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_A3284 enoyl-CoA hydratase/isomerase YP_001411646.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bur:Bcep18194_C7122 flavin-containing monooxygenase FMO YP_001411647.1 PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: hne:HNE_1389 hypothetical protein YP_001411648.1 KEGG: hne:HNE_0989 hypothetical protein YP_001411649.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: hne:HNE_0988 monooxygenase YP_001411650.1 PFAM: aminoglycoside phosphotransferase; KEGG: hne:HNE_2794 phosphotransferase enzyme family protein YP_001411651.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr1495 oxidoreductase YP_001411652.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hne:HNE_2796 alcohol dehydrogenase, class III YP_001411653.1 TIGRFAM: TonB family protein; KEGG: rpe:RPE_0962 TonB family protein YP_001411654.1 TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpd:RPD_2358 biopolymer transport protein ExbD/TolR YP_001411655.1 TIGRFAM: TonB-system energizer ExbB type-1; PFAM: MotA/TolQ/ExbB proton channel; KEGG: pen:PSEEN5451 solvent/drug/ferric siderophore transport protein ExbB YP_001411656.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pmy:Pmen_0802 TonB-dependent siderophore receptor YP_001411657.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: pmy:Pmen_0803 2OG-Fe(II) oxygenase YP_001411658.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pmy:Pmen_0804 FMN-dependent alpha-hydroxy acid dehydrogenase YP_001411659.1 PFAM: protein of unknown function DUF1457 YP_001411660.1 PFAM: beta-lactamase domain protein; KEGG: reh:H16_A3671 alkyl sulfatase YP_001411661.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_5531 alcohol dehydrogenase, zinc-binding domain protein YP_001411663.1 PFAM: protein of unknown function DUF490; KEGG: rru:Rru_A2098 protein of unknown function DUF490 YP_001411664.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rru:Rru_A2099 surface antigen YP_001411665.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_3434 heavy metal translocating P-type ATPase YP_001411666.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: shw:Sputw3181_2197 protein of unknown function DUF955 YP_001411667.1 KEGG: reh:H16_A0011 hypothetical protein YP_001411668.1 PFAM: regulatory protein TetR; KEGG: reu:Reut_B3897 regulatory protein, TetR YP_001411669.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_1337 alpha/beta hydrolase fold YP_001411670.1 PFAM: Integral membrane protein TerC; KEGG: rpd:RPD_0056 integral membrane protein TerC YP_001411671.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_1266 short-chain dehydrogenase/reductase SDR YP_001411672.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mkm:Mkms_3808 acyl-CoA dehydrogenase domain protein YP_001411673.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bbt:BBta_0757 two component sensor histidine kinase YP_001411674.1 KEGG: rru:Rru_A0598 phosphate ABC transporter, periplasmic binding protein YP_001411675.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mca:MCA1072 phosphate ABC transporter, permease protein YP_001411676.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A0600 phosphate transport system permease protein 2 YP_001411677.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3118 phosphate ABC transporter, ATPase subunit YP_001411678.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: phoU; phosphate transport regulon regulator PhoU; K02039 phosphate transport system protein YP_001411679.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mmr:Mmar10_0483 two component transcriptional regulator, winged helix family YP_001411680.1 PFAM: GcrA cell cycle regulator; KEGG: mmr:Mmar10_0485 GcrA cell cycle regulator YP_001411681.1 PFAM: ABC-2 type transporter; KEGG: mmr:Mmar10_0486 ABC-2 type transporter YP_001411682.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: ret:RHE_CH00516 diaminobutyrate--pyruvate aminotransferase protein YP_001411683.1 TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: rpe:RPE_4883 ornithine carbamoyltransferase YP_001411684.1 PFAM: Hsp33 protein; KEGG: bra:BRADO6776 heat shock protein HSP33 YP_001411685.1 KEGG: mag:amb0319 hypothetical protein YP_001411686.1 PFAM: BLUF domain protein; KEGG: hne:HNE_0975 BLUF domain protein YP_001411687.1 TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mag:amb2375 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase and related deacylase YP_001411688.1 protein associated with Co2+ and Mg2+ efflux YP_001411689.1 TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: rpd:RPD_0903 O-succinylhomoserine sulfhydrylase YP_001411690.1 Catalyzes the deamination of dCTP to form dUTP YP_001411691.1 PFAM: LrgA family protein; KEGG: csa:Csal_1793 LrgA YP_001411692.1 PFAM: LrgB family protein; KEGG: dar:Daro_3106 LrgB-like protein YP_001411694.1 PFAM: Radical SAM domain protein; KEGG: rde:RD1_2724 radical SAM domain protein YP_001411695.1 KEGG: tde:TDE1337 hypothetical protein YP_001411696.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mes:Meso_1525 short-chain dehydrogenase/reductase SDR YP_001411697.1 PFAM: NADPH-dependent FMN reductase; KEGG: ret:RHE_PE00021 hypothetical protein YP_001411698.1 KEGG: rsh:Rsph17029_2606 hypothetical protein YP_001411699.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: nha:Nham_1581 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_001411700.1 KEGG: hne:HNE_1502 hypothetical protein YP_001411701.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: psa:PST_0499 probable choline transporter YP_001411702.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_001411703.1 PFAM: response regulator receiver; KEGG: mmr:Mmar10_0951 response regulator receiver protein YP_001411704.1 PFAM: glycosyl transferase family 2; General secretory system II protein E domain protein; KEGG: xcb:XC_3555 hypothetical protein YP_001411705.1 PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc00140 putative amino-acid binding periplasmic protein YP_001411706.1 PFAM: Phosphoglycerate mutase; KEGG: swi:Swit_3559 putative phosphohistidine phosphatase, SixA YP_001411707.1 KEGG: aeh:Mlg_0287 sterol desaturase-like protein YP_001411708.1 KEGG: stm:STM0050 putative nitrite reductase YP_001411709.1 KEGG: ret:RHE_CH00534 hypothetical protein YP_001411710.1 SMART: helicase c2; KEGG: mag:amb3608 Rad3-related DNA helicase YP_001411711.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: xcv:XCV0528 two-component system sensor protein YP_001411712.1 class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine YP_001411713.1 KEGG: ppr:PBPRA1525 hypothetical protein YP_001411714.1 KEGG: mmr:Mmar10_0515 hypothetical protein YP_001411715.1 PFAM: peptidase S24 S26A and S26B; KEGG: rpc:RPC_0757 putative phage repressor YP_001411716.1 PFAM: protein of unknown function DUF952; KEGG: bmb:BruAb1_0338 hypothetical protein YP_001411717.1 PFAM: dihydroorotate dehydrogenase; KEGG: mag:amb3890 dihydroorotate dehydrogenase YP_001411718.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: noc:Noc_0186 arsenate reductase YP_001411719.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rpc:RPC_0753 MATE efflux family protein YP_001411720.1 PFAM: thioesterase superfamily protein; KEGG: rsp:RSP_2203 hypothetical protein YP_001411721.1 PFAM: thioesterase superfamily protein; KEGG: rpb:RPB_1029 phenylacetic acid degradation-related protein YP_001411722.1 PFAM: protein of unknown function DUF1457 YP_001411723.1 PFAM: flavin-containing monooxygenase FMO; KEGG: monooxygenase, flavin-binding family; K07222 putative flavoprotein involved in K+ transport YP_001411724.1 PFAM: regulatory protein TetR; KEGG: transcriptional regulator, TetR family YP_001411725.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: esterase, putative YP_001411726.1 KEGG: rpc:RPC_1797 hypothetical protein YP_001411727.1 PFAM: protein of unknown function UPF0016; KEGG: mag:amb2468 predicted membrane protein YP_001411728.1 PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12888 similar to epoxide hydrolase YP_001411729.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: hne:HNE_2975 oxidoreductase, zinc-binding dehydrogenase family YP_001411730.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein YP_001411731.1 KEGG: ret:RHE_CH00543 hypothetical protein YP_001411732.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mmr:Mmar10_0527 MscS mechanosensitive ion channel YP_001411733.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: mes:Meso_0029 DEAD/H associated YP_001411734.1 KEGG: bja:blr1149 putative ICC-like phosphoesterases YP_001411735.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: rpb:RPB_4376 cytochrome c biogenesis protein, transmembrane region YP_001411736.1 KEGG: mag:amb4405 hypothetical protein YP_001411737.1 PFAM: protein of unknown function DUF81; KEGG: mlo:mll5620 hypothetical protein YP_001411738.1 PFAM: Peptidoglycan-binding domain 1 protein; Sel1 domain protein repeat-containing protein; KEGG: rle:RL0588 putative peptidoglycan binding protein YP_001411739.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_4514 TRAP dicarboxylate transporter-DctP subunit YP_001411740.1 PFAM: SCP-like extracellular; KEGG: hypothetical protein YP_001411741.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: transcriptional regulator, putative YP_001411742.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bbt:BBta_0815 putative acyl-CoA dehydrogenase YP_001411743.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_5152 acyl-CoA dehydrogenase-like protein YP_001411744.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001411745.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase YP_001411746.1 PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein YP_001411747.1 PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_19810 hypothetical protein YP_001411748.1 PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: bcn:Bcen_2046 transcriptional regulator, AraC family YP_001411749.1 PFAM: ThiJ/PfpI domain protein; KEGG: sco:SCO6747 hypothetical protein YP_001411750.1 PFAM: ThiJ/PfpI domain protein; KEGG: gur:Gura_3528 ThiJ/PfpI domain protein YP_001411751.1 KEGG: bbr:BB1197 hypothetical protein YP_001411752.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: fal:FRAAL0539 conserved hypothetical protein, putative esterase/lipase domain YP_001411753.1 KEGG: mes:Meso_0629 hypothetical protein YP_001411754.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001411755.1 PFAM: regulatory protein TetR; KEGG: mjl:Mjls_2665 putative transcriptional regulator, TetR family YP_001411756.1 KEGG: hypothetical protein YP_001411757.1 KEGG: hypothetical protein YP_001411758.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: pol:Bpro_2477 acyl-CoA dehydrogenase-like YP_001411759.1 PFAM: alpha/beta hydrolase fold; KEGG: hydrolase, putative YP_001411760.1 KEGG: mgi:Mflv_4464 hypothetical protein YP_001411761.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro00366 probable enoyl-CoA hydratase YP_001411762.1 KEGG: mpt:Mpe_A0856 hypothetical protein YP_001411763.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_2754 NAD dependent epimerase/dehydratase family protein YP_001411764.1 KEGG: har:HEAR1910 hypothetical protein YP_001411765.1 KEGG: eli:ELI_11930 glutathione S-transferase YP_001411766.1 KEGG: bbr:BB0818 hypothetical protein YP_001411769.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: mag:amb4019 predicted methyltransferase YP_001411770.1 PFAM: MaoC domain protein dehydratase; KEGG: rpe:RPE_3528 MaoC domain protein dehydratase YP_001411771.1 PFAM: thioesterase superfamily protein; KEGG: pde:Pden_3220 thioesterase superfamily protein YP_001411772.1 PFAM: thioesterase superfamily protein; KEGG: hne:HNE_0573 thioesterase family protein YP_001411774.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: thiolase family protein YP_001411775.1 PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_0946 MaoC-like dehydratase YP_001411776.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_1134 acyl-CoA dehydrogenase family protein YP_001411777.1 KEGG: nar:Saro_3777 hypothetical protein YP_001411778.1 PFAM: regulatory protein TetR; KEGG: cvi:CV4310 probable transcription regulator, TetR family YP_001411779.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_1134 acyl-CoA dehydrogenase family protein YP_001411780.1 PFAM: TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: aeh:Mlg_0921 sodium/hydrogen exchanger YP_001411781.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_0217 NAD dependent epimerase/dehydratase family YP_001411782.1 PFAM: glutamine amidotransferase class-I; KEGG: azo:azo2531 conserved hypothetical protein YP_001411783.1 TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV0945 putative proline imino-peptidase YP_001411784.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001411785.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_001411786.1 PFAM: histone family protein DNA-binding protein; KEGG: nwi:Nwi_1892 histone-like DNA-binding protein YP_001411787.1 KEGG: cps:CPS_3721 putative glycosyl hydrolase YP_001411788.1 PFAM: Glutathione S-transferase domain; KEGG: rde:RD1_3296 glutathione S-transferase, putative YP_001411789.1 PFAM: periplasmic binding protein; KEGG: pde:Pden_1367 periplasmic binding protein YP_001411790.1 PFAM: transport system permease protein; KEGG: bms:BR1345 iron compound ABC transporter, permease protein YP_001411791.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swi:Swit_0257 ABC transporter related YP_001411792.1 KEGG: abo:ABO_1416 hypothetical protein YP_001411793.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: atc:AGR_C_2249 blue-light photoreceptor YP_001411794.1 KEGG: hne:HNE_1421 hypothetical protein YP_001411795.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bba:Bd1632 23S rRNA methyltransferase YP_001411796.1 PFAM: YhhN family protein; KEGG: mlo:mll3549 hypothetical protein YP_001411797.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpa:RPA2110 probable transcriptional regulator, AraC family YP_001411799.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: mes:Meso_0192 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001411800.1 KEGG: mes:Meso_0191 hypothetical protein YP_001411801.1 PFAM: histidinol dehydrogenase; KEGG: bja:blr1256 histidinol dehydrogenase YP_001411802.1 PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH00582 hypothetical protein YP_001411803.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rru:Rru_A2769 protein tyrosine phosphatase YP_001411804.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_2411 GCN5-related N-acetyltransferase YP_001411805.1 PFAM: protein of unknown function DUF541; KEGG: maq:Maqu_3473 protein of unknown function DUF541 YP_001411806.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001411807.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: nar:Saro_1057 maf protein YP_001411808.1 TIGRFAM: ribonuclease, Rne/Rng family; KEGG: gsu:GSU3239 ribonuclease G YP_001411809.1 PFAM: protein of unknown function DUF329; KEGG: sme:SMc02312 zinc-binding protein YP_001411810.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A2050 secretion protein HlyD YP_001411811.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rru:Rru_A2051 hydrophobe/amphiphile efflux-1 HAE1 YP_001411812.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A2052 RND efflux system, outer membrane lipoprotein, NodT YP_001411813.1 PFAM: regulatory protein TetR; KEGG: pat:Patl_0743 transcriptional regulator, TetR family YP_001411814.1 TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mes:Meso_4538 tartrate dehydrogenase YP_001411815.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: swi:Swit_4322 transcriptional regulator, GntR family YP_001411816.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pae:PA5468 probable citrate transporter YP_001411817.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hne:HNE_1475 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_001411818.1 KEGG: hne:HNE_1471 hypothetical protein YP_001411819.1 KEGG: hne:HNE_1472 hypothetical protein YP_001411820.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: rso:RS05182 putative alpha-amylase-related protein YP_001411821.1 TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: reu:Reut_B4228 alpha amylase, catalytic subdomain YP_001411822.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; KEGG: rso:RSp0239 glycogen branching enzyme YP_001411823.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bxe:Bxe_B2864 putative glycogen operon protein GlgX YP_001411824.1 TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pfl:PFL_2886 malto-oligosyltrehalose trehalohydrolase YP_001411825.1 TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; KEGG: gbe:GbCGDNIH1_0748 4-alpha-glucanotransferase YP_001411826.1 TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gbe:GbCGDNIH1_0747 (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase YP_001411828.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpd:RPD_3208 short-chain dehydrogenase/reductase SDR YP_001411831.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: bur:Bcep18194_B2908 hypothetical protein YP_001411832.1 PFAM: AsmA family protein; KEGG: mag:amb3407 uncharacterized protein involved in outer membrane biogenesis YP_001411833.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mlr5867 ABC transporter, ATP-binding protein exsA YP_001411834.1 TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: azo:azo2149 putative acetoacetyl-CoA synthase YP_001411835.1 PFAM: alpha/beta hydrolase fold; KEGG: acr:Acry_1024 alpha/beta hydrolase fold YP_001411836.1 PFAM: sodium:neurotransmitter symporter; KEGG: csa:Csal_3274 sodium:neurotransmitter symporter YP_001411837.1 PFAM: Glutathione S-transferase domain; KEGG: abo:ABO_0876 transferase YP_001411838.1 PFAM: AMP-dependent synthetase and ligase; KEGG: long-chain-fatty-acid--CoA ligase YP_001411839.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sal:Sala_1855 short-chain dehydrogenase/reductase SDR YP_001411840.1 PFAM: glycosyl transferase family 2; KEGG: ppu:PP_1526 beta-(1-3)-glucosyl transferase, putative YP_001411841.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: hne:HNE_3525 amidohydrolase family protein/D-aminoacylase domain protein YP_001411842.1 KEGG: nwi:Nwi_2312 hypothetical protein YP_001411843.1 TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: rpe:RPE_3865 cytochrome c oxidase, subunit II YP_001411844.1 TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I; KEGG: nwi:Nwi_2314 cytochrome c oxidase, subunit I YP_001411845.1 KEGG: rpc:RPC_3851 hypothetical protein YP_001411846.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001411847.1 PFAM: protein of unknown function DUF819; KEGG: swi:Swit_1697 protein of unknown function DUF819 YP_001411849.1 KEGG: rru:Rru_A2001 hypothetical protein YP_001411850.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV1259 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase YP_001411851.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pen:PSEEN0672 multidrug resistance transporter, Bcr/CflA family YP_001411852.1 PFAM: alpha/beta hydrolase fold; KEGG: swi:Swit_1445 alpha/beta hydrolase fold YP_001411853.1 PFAM: luciferase family protein; KEGG: swi:Swit_1444 luciferase family protein YP_001411854.1 KEGG: mag:amb1296 hypothetical protein YP_001411855.1 KEGG: mmr:Mmar10_0269 major facilitator superfamily MFS_1 YP_001411856.1 PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: hne:HNE_3525 amidohydrolase family protein/D-aminoacylase domain protein YP_001411857.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bbr:BB3554 hypothetical protein YP_001411858.1 PFAM: alpha/beta hydrolase fold; KEGG: hydrolase, alpha/beta hydrolase fold family YP_001411859.1 KEGG: bpa:BPP3905 histone protein YP_001411860.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: hypothetical protein YP_001411862.1 PFAM: S-adenosylmethionine decarboxylase related; KEGG: tcx:Tcr_0272 S-adenosylmethionine decarboxylase related YP_001411863.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001411865.1 TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: reu:Reut_A1963 protein of unknown function 1935 YP_001411866.1 KEGG: pau:PA14_37380 putative flavin-binding monooxygenase YP_001411867.1 KEGG: aba:Acid345_2195 hypothetical protein YP_001411868.1 PFAM: helix-turn-helix domain protein; KEGG: pmy:Pmen_4350 transcriptional regulator, XRE family YP_001411869.1 KEGG: pmy:Pmen_4349 hypothetical protein YP_001411870.1 SMART: Parallel beta-helix repeat; KEGG: mlo:mll4444 hypothetical protein YP_001411871.1 KEGG: mlo:mll4444 hypothetical protein YP_001411872.1 TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: nha:Nham_1097 isocitrate lyase YP_001411873.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_001411874.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: bja:bll2454 probable transcriptional regulator YP_001411875.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; KEGG: rde:RD1_0794 cytochrome oxidase, subunit II, putative YP_001411876.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: pde:Pden_4010 cytochrome bd ubiquinol oxidase, subunit I YP_001411877.1 PFAM: histidine kinase A domain protein; KEGG: mag:amb0567 signal transduction histidine kinase YP_001411878.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001411879.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001411880.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_001411881.1 KEGG: hne:HNE_2773 hypothetical protein YP_001411882.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: psp:PSPPH_2776 3-oxoacyl-[acyl-carrier protein] reductase YP_001411883.1 PFAM: flavin-containing monooxygenase FMO; KEGG: xcv:XCV2088 FAD containing monooxygenase YP_001411884.1 PFAM: regulatory protein TetR; KEGG: mlo:mll3939 transcriptional regulator (TetR-family) YP_001411885.1 PFAM: thioesterase superfamily protein; KEGG: rru:Rru_A1719 thioesterase superfamily YP_001411886.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001411887.1 PFAM: protein of unknown function DUF72; KEGG: pde:Pden_4949 protein of unknown function DUF72 YP_001411888.1 PFAM: glycine hydroxymethyltransferase; KEGG: bja:bll5912 serine hydroxymethyltransferase YP_001411889.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_3225 acyl-CoA dehydrogenase family protein YP_001411890.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: rpd:RPD_4127 chaperonin GroEL YP_001411891.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001411892.1 PFAM: regulatory protein TetR; KEGG: stp:Strop_1714 regulatory protein, TetR YP_001411894.1 PFAM: alanine racemase domain protein; KEGG: sal:Sala_3175 threonine aldolase family protein YP_001411895.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sme:SMb21148 putative oxidoreductase protein YP_001411896.1 PFAM: phosphofructokinase; KEGG: rrs:RoseRS_1831 6-phosphofructokinase YP_001411897.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cps:CPS_2555 acetyltransferase, GNAT family YP_001411898.1 PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein YP_001411899.1 TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: rpe:RPE_4612 phosphoribosylamine--glycine ligase YP_001411900.1 TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: rpa:RPA1161 putative exonuclease VII, large subunit OB-fold nucleic acid binding domain YP_001411901.1 KEGG: rpa:RPA1160 hypothetical protein YP_001411902.1 PFAM: peptidase M23B; KEGG: sbl:Sbal_2531 peptidase M23B YP_001411903.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: gbe:GbCGDNIH1_2243 lipid A biosynthesis lauroyl acyltransferase YP_001411904.1 TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; KEGG: rsq:Rsph17025_0060 tetraacyldisaccharide 4'-kinase YP_001411905.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: mag:amb4092 3-deoxy-D-manno-octulosonic-acid transferase YP_001411906.1 PFAM: protein of unknown function DUF374; KEGG: mag:amb4091 hypothetical protein YP_001411907.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter, HlyB/MsbA family; K06147 ATP-binding cassette, subfamily B, bacterial YP_001411908.1 PFAM: TspO/MBR family protein; KEGG: acr:Acry_0012 TspO and MBR like protein YP_001411909.1 KEGG: bra:BRADO6098 hypothetical protein YP_001411910.1 PFAM: inositol monophosphatase; KEGG: inositol monophosphatase family protein YP_001411911.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: nha:Nham_3182 peptidase U62, modulator of DNA gyrase YP_001411912.1 KEGG: hne:HNE_1363 hypothetical protein YP_001411913.1 PFAM: Appr-1-p processing domain protein; KEGG: pde:Pden_3638 Appr-1-p processing domain protein YP_001411914.1 PFAM: Class I peptide chain release factor; KEGG: rru:Rru_A0097 class I peptide chain release factor YP_001411915.1 KEGG: ava:Ava_4644 hypothetical protein YP_001411916.1 KEGG: pen:PSEEN1046 transcriptional regulator YP_001411917.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001411918.1 KEGG: ret:RHE_CH00896 hypothetical protein YP_001411919.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: enoyl-CoA hydratase/isomerase family protein YP_001411920.1 KEGG: bmb:BruAb1_1869 hypothetical protein YP_001411921.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: mag:amb0832 FAD synthase YP_001411922.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mlo:mlr8242 hypothetical protein YP_001411923.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: bra:BRADO6080 putative methyltransferase YP_001411924.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rpb:RPB_1171 pseudouridine synthase, Rsu YP_001411925.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mes:Meso_0427 CMP/dCMP deaminase, zinc-binding YP_001411926.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: acyl-CoA dehydrogenase family protein YP_001411927.1 PFAM: Glutathione S-transferase domain; KEGG: bmb:BruAb1_0852 glutathione S-transferase family protein YP_001411928.1 KEGG: bbt:BBta_3094 putative two-component sensor histidine kinase with a ATP-binding domain (C-term); TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001411929.1 PFAM: aminoglycoside phosphotransferase; KEGG: reh:H16_A1099 predicted aminoglycoside phosphotransferase YP_001411930.1 PFAM: fatty acid desaturase; KEGG: bja:blr4081 hypothetical protein YP_001411931.1 PFAM: regulatory protein TetR; KEGG: maq:Maqu_3581 transcriptional regulator, TetR family YP_001411932.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: aba:Acid345_3460 major facilitator superfamily (MFS) transporter YP_001411933.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: rru:Rru_A0572 4-hydroxybenzoate polyprenyl transferase YP_001411934.1 PFAM: NUDIX hydrolase; KEGG: sco:SCO5600 hypothetical protein YP_001411936.1 PFAM: protein of unknown function DUF558; KEGG: mlo:mll6903 hypothetical protein YP_001411937.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mlo:mll1286 probable NAD(P)H dehydrogenase YP_001411938.1 TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GCS2; KEGG: rru:Rru_A0570 glutamate--cysteine ligase YP_001411939.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bte:BTH_II0667 glyoxalase family protein family YP_001411940.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bcn:Bcen_4816 transcriptional regulator, AbrB family YP_001411941.1 KEGG: rpc:RPC_3693 PilT protein-like YP_001411942.1 KEGG: fal:FRAAL4218 putative DNA topology modulation protein FlaR YP_001411943.1 PFAM: DinB family protein; KEGG: rfr:Rfer_0154 DinB YP_001411944.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: sdn:Sden_2391 cupin 2, conserved barrel YP_001411945.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mxa:MXAN_6479 transcriptional regulator, AraC family YP_001411946.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: mes:Meso_0739 peptidase U62, modulator of DNA gyrase YP_001411949.1 TIGRFAM: Cytochrome c oxidase subunit II; PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: nha:Nham_3463 cytochrome-c oxidase YP_001411950.1 TIGRFAM: Cytochrome c oxidase subunit I type; PFAM: cytochrome c oxidase subunit I; KEGG: rpb:RPB_4587 cytochrome-c oxidase YP_001411951.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: rle:RL1023 putative protoheme IX farnesyltransferase (heme o synthase) YP_001411953.1 PFAM: cytochrome c oxidase subunit III; KEGG: sme:SMc00013 cytochrome c oxidase subunit III YP_001411954.1 PFAM: protein of unknown function DUF983; KEGG: atc:AGR_C_1409 hypothetical protein YP_001411955.1 PFAM: Surfeit locus 1 family protein; KEGG: bra:BRADO1723 putative SURF1 family protein YP_001411956.1 PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: rru:Rru_A3232 thermostable carboxypeptidase 1 YP_001411957.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rsh:Rsph17029_0480 threonine synthase YP_001411958.1 PFAM: peptidase M16 domain protein; KEGG: sil:SPO3070 peptidase, M16 family YP_001411959.1 PFAM: GCN5-related N-acetyltransferase; KEGG: nwi:Nwi_0231 GCN5-related N-acetyltransferase YP_001411960.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: rpb:RPB_4495 diguanylate cyclase/phosphodiesterase YP_001411961.1 PFAM: protein of unknown function DUF179; KEGG: bja:blr1492 putative transcriptional regulator YP_001411962.1 KEGG: sil:SPO0295 hypothetical protein YP_001411963.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: AhpC/TSA family protein YP_001411964.1 PFAM: ribonuclease H; KEGG: bra:BRADO6586 ribonuclease H (RNase H) YP_001411965.1 TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; KEGG: sme:SMc00017 putative homoserine kinase protein YP_001411966.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; KEGG: mmr:Mmar10_2215 hydroxymethylbutenyl pyrophosphate reductase YP_001411967.1 KEGG: rru:Rru_A3052 hypothetical protein YP_001411968.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mag:amb0766 glycine cleavage system T protein YP_001411969.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001411970.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001411971.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001411972.1 PFAM: protein of unknown function DUF925; KEGG: bja:bll1166 hypothetical protein YP_001411973.1 PFAM: dienelactone hydrolase; KEGG: mxa:MXAN_1666 hypothetical protein YP_001411974.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mag:amb3996 ATP synthase B chain precursor YP_001411975.1 PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mes:Meso_0698 H+-transporting two-sector ATPase, B/B' subunit YP_001411976.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_001411977.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001411978.1 KEGG: mag:amb3992 ATP synthase protein I YP_001411979.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: mes:Meso_0768 chromosome segregation protein SMC YP_001411980.1 PFAM: DSBA oxidoreductase; KEGG: bmb:BruAb1_0518 twin-arginine translocation signal domain protein YP_001411981.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: mag:amb3984 A/G-specific DNA glycosylase YP_001411982.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: modification methylase CcrMI YP_001411983.1 PFAM: ribonuclease HII/HIII; KEGG: swi:Swit_4574 ribonuclease H YP_001411984.1 PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_3365 chloride peroxidase YP_001411985.1 PFAM: regulatory protein MarR; Penicillinase repressor; KEGG: hne:HNE_3364 transcriptional regulator, MarR family YP_001411986.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: eli:ELI_03135 hypothetical protein YP_001411987.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: nha:Nham_3222 radical SAM YP_001411988.1 PFAM: glycosyl transferase family 2; KEGG: bbt:BBta_3382 putative glycosyl transferase, group 2 family protein YP_001411989.1 KEGG: rde:RD1_0184 hypothetical protein YP_001411990.1 TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: pde:Pden_3830 putative transcriptional regulators, CopG/Arc/MetJ family YP_001411991.1 PFAM: plasmid stabilization system; KEGG: mbo:Mb1994c hypothetical protein YP_001411992.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_001411993.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: nwi:Nwi_2601 molybdopterin biosynthesis protein B YP_001411994.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A0868 AcrB/AcrD/AcrF family protein YP_001411995.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aav:Aave_1362 efflux transporter, RND family, MFP subunit YP_001411996.1 PFAM: regulatory protein TetR; KEGG: rpa:RPA3021 probable transcriptional regulator TetR family YP_001411997.1 PFAM: Lytic transglycosylase catalytic; KEGG: mag:amb4398 soluble lytic murein transglycosylase and related regulatory protein YP_001411998.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: mlo:mll7705 putative DNA polymerase bacteriophage-type YP_001411999.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: electrotransfer ubiquinone oxidoreductase, putative YP_001412000.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpc:RPC_4357 tetratricopeptide TPR_2 YP_001412001.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mag:amb4435 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase YP_001412002.1 PFAM: Polyprenyl synthetase; KEGG: rpb:RPB_1088 farnesyltranstransferase YP_001412003.1 KEGG: pde:Pden_2030 hypothetical protein YP_001412004.1 KEGG: mag:amb2163 predicted O-methyltransferase YP_001412005.1 PFAM: peptidase S49; KEGG: rpa:RPA1043 possible protease SohB YP_001412007.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001412008.1 TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: rpe:RPE_4409 glycine--tRNA ligase YP_001412009.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001412010.1 PFAM: cell wall hydrolase SleB; KEGG: hne:HNE_0687 putative hydrolase domain protein YP_001412011.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mav:MAV_2820 short chain dehydrogenase YP_001412012.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: gbe:GbCGDNIH1_0642 nicotinate-nucleotide pyrophosphorylase (carboxylating) YP_001412013.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rpc:RPC_4339 L-aspartate oxidase YP_001412014.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: rpd:RPD_1229 quinolinate synthetase complex, A subunit YP_001412016.1 KEGG: rpe:RPE_4395 hypothetical protein YP_001412017.1 KEGG: bbt:BBta_2370 hypothetical protein YP_001412018.1 PFAM: dienelactone hydrolase; KEGG: mmr:Mmar10_2929 dienelactone hydrolase YP_001412019.1 KEGG: bov:BOV_0659 hypothetical protein YP_001412020.1 PFAM: peptidase S16 lon domain protein; KEGG: rxy:Rxyl_1929 ATP-dependent protease, putative YP_001412021.1 KEGG: rxy:Rxyl_1928 hypothetical protein YP_001412022.1 PFAM: UspA domain protein; KEGG: mag:amb1529 universal stress protein UspA and related nucleotide-binding protein YP_001412023.1 KEGG: mmr:Mmar10_0797 hypothetical protein YP_001412024.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001412025.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: sat:SYN_03000 pyridoxamine phosphate oxidase YP_001412026.1 PFAM: protein of unknown function DUF583; KEGG: ajs:Ajs_0600 protein of unknown function DUF583 YP_001412027.1 TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; KEGG: rpc:RPC_4332 DNA-3-methyladenine glycosylase I YP_001412028.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rpa:RPA1068 glycine cleavage T protein (aminomethyl transferase) YP_001412029.1 PFAM: glycosyl transferase family 9; KEGG: rru:Rru_A2230 glycosyl transferase, family 9 YP_001412030.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_001412031.1 PFAM: Usg family protein; KEGG: acr:Acry_2505 Usg family protein YP_001412032.1 TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbt:BBta_2364 putative dehydrogenase, NAD(P)-binding domain and GroES-like domain YP_001412033.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpe:RPE_3824 AMP-dependent synthetase and ligase YP_001412034.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rrs:RoseRS_1054 lysine exporter protein (LysE/YggA) YP_001412035.1 thiamine-pyrophosphate requiring enzyme YP_001412036.1 KEGG: bbt:BBta_2379 hypothetical protein YP_001412037.1 KEGG: rpc:RPC_4328 hypothetical protein YP_001412038.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: hypothetical protein YP_001412039.1 KEGG: rru:Rru_A0255 hypothetical protein YP_001412040.1 PFAM: glucose sorbosone dehydrogenase; KEGG: pfo:Pfl_2615 hypothetical protein YP_001412041.1 KEGG: rle:RL3079 putative transmembrane protein YP_001412042.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: swi:Swit_4638 FMN-dependent alpha-hydroxy acid dehydrogenase YP_001412043.1 PFAM: regulatory protein MarR; KEGG: mva:Mvan_6049 transcriptional regulator, MarR family YP_001412044.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: 2-deoxy-D-gluconate 3-dehydrogenase YP_001412046.1 PFAM: ferric-uptake regulator; KEGG: maq:Maqu_3775 ferric uptake regulator, Fur family YP_001412047.1 PFAM: protein of unknown function DUF159; KEGG: rpe:RPE_4383 protein of unknown function DUF159 YP_001412048.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO2056 putative acetyltransferase YP_001412049.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ana:alr5216 probable hemolysin YP_001412050.1 PFAM: FAD linked oxidase domain protein; KEGG: rru:Rru_A0442 FAD linked oxidase-like YP_001412051.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: mmr:Mmar10_2352 excinuclease ABC, C subunit domain protein YP_001412052.1 PFAM: beta-lactamase; KEGG: mtc:MT1771 penicillin-binding protein 4 YP_001412053.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mul:MUL_2390 hypothetical protein YP_001412054.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: mag:amb3712 putative translation factor YP_001412055.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bms:BR0412 acyl-CoA dehydrogenase family protein YP_001412056.1 PFAM: sodium/glutamate symporter; KEGG: hha:Hhal_2269 sodium/glutamate symporter YP_001412057.1 PFAM: beta-lactamase domain protein; KEGG: metallo-beta-lactamase family protein YP_001412058.1 PFAM: histone deacetylase superfamily; KEGG: mca:MCA2486 histone deacetylase/AcuC/AphA family protein YP_001412059.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: pde:Pden_0398 exodeoxyribonuclease VII, small subunit YP_001412060.1 PFAM: Polyprenyl synthetase; KEGG: mag:amb2903 geranylgeranyl pyrophosphate synthase YP_001412061.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001412062.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: acr:Acry_2652 hemolysin A YP_001412063.1 KEGG: sil:SPO0029 23S rRNA (uracil-5-)-methyltransferase RumA YP_001412065.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001412066.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpe:RPE_4591 short-chain dehydrogenase/reductase SDR YP_001412067.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bbt:BBta_7804 putative heat shock protein-DnaJ-like protein YP_001412068.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_001412069.1 PFAM: 17 kDa surface antigen; KEGG: rbe:RBE_1424 17 kD surface antigen precursor YP_001412070.1 TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mmr:Mmar10_0857 pyridoxamine 5'-phosphate oxidase YP_001412071.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: noc:Noc_2871 cation efflux protein YP_001412072.1 KEGG: hypothetical protein YP_001412073.1 KEGG: bam:Bamb_2020 hypothetical protein YP_001412074.1 KEGG: rme:Rmet_1467 prophage CP4-57 regulatory YP_001412075.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bja:bll2623 short-chain alcohol dehydrogenase YP_001412076.1 KEGG: sus:Acid_2771 hypothetical protein YP_001412077.1 PFAM: aminotransferase class-III; KEGG: ret:RHE_CH02145 probable adenosylmethionine--8-amino-7-oxononanoate aminotransferaseprotein YP_001412078.1 PFAM: Amidase; KEGG: bja:bll3874 putative amidase YP_001412079.1 activates fatty acids by binding to coenzyme A YP_001412080.1 KEGG: eba:ebA2569 hypothetical protein YP_001412081.1 PFAM: beta-lactamase domain protein; KEGG: mmr:Mmar10_0859 beta-lactamase domain protein YP_001412082.1 PFAM: regulatory protein MarR; KEGG: ret:RHE_CH03358 probable transcriptional regulator protein, MarR family YP_001412084.1 activates fatty acids by binding to coenzyme A YP_001412086.1 PFAM: aminotransferase class V; Pyridoxal-dependent decarboxylase; KEGG: eli:ELI_00260 putative sphingosine-1-phosphate lyase YP_001412087.1 PFAM: nuclear export factor GLE1; KEGG: atc:AGR_C_2707 hypothetical protein YP_001412088.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rme:Rmet_4565 TonB-dependent receptor YP_001412090.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL2628 putative enoyl-CoA hydratase/isomerase, involved in phenylacetic acid degradation YP_001412091.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpa:RPA0416 enoyl-CoA hydratase YP_001412092.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0454 TonB-dependent receptor, putative YP_001412093.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_1860 FAD dependent oxidoreductase YP_001412094.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: mgm:Mmc1_0220 peptidase M42 family protein YP_001412095.1 PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; KEGG: mes:Meso_2468 GCN5-related N-acetyltransferase YP_001412096.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: mes:Meso_2469 asparagine synthase (glutamine-hydrolyzing) YP_001412097.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component YP_001412098.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_3848 ABC transporter related YP_001412099.1 KEGG: mes:Meso_2021 hypothetical protein YP_001412100.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mlo:mlr1575 hypothetical protein YP_001412101.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: abo:ABO_0984 glutaryl-CoA dehydrogenase YP_001412102.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_4581 transcriptional regulator, LysR family YP_001412103.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: rso:RSc3335 hypothetical protein YP_001412104.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rso:RS05452 putative transmembrane protein YP_001412105.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1900 transcriptional regulator, LysR-family YP_001412106.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: rpd:RPD_2021 2-nitropropane dioxygenase, NPD YP_001412107.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: pmy:Pmen_4353 putative transcriptional regulator, Crp/Fnr family YP_001412108.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: hne:HNE_0905 dioxygenase, TauD/TfdA family YP_001412109.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reh:H16_A0038 alpha-ketoglutarate-dependent taurine dioxygenase YP_001412110.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: atc:AGR_C_664 hypothetical protein YP_001412111.1 PFAM: beta-lactamase; KEGG: sen:SACE_2212 beta-lactamase YP_001412112.1 PFAM: beta-lactamase; KEGG: hne:HNE_1398 beta-lactamase YP_001412113.1 KEGG: lic:LIC20191 hypothetical protein YP_001412114.1 activator of 3-phenylpropionic acid catabolism YP_001412115.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1923 ABC transporter related YP_001412116.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mfa:Mfla_1392 molybdate ABC transporter, permease protein YP_001412117.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: aeh:Mlg_1925 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001412118.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: eli:ELI_04765 taurine dioxygenase YP_001412119.1 PFAM: protein of unknown function DUF1214; KEGG: afu:AF2163 hypothetical protein YP_001412120.1 KEGG: nar:Saro_2217 integral membrane protein-like YP_001412121.1 PFAM: protein of unknown function DUF1214; KEGG: afu:AF2163 hypothetical protein YP_001412122.1 PFAM: protein of unknown function DUF1254; KEGG: nar:Saro_2217 integral membrane protein-like YP_001412123.1 KEGG: hne:HNE_2421 hypothetical protein YP_001412124.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sme:SMc00114 probable protease II oligopeptidase B hydrolase serine protease protein YP_001412125.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: sme:SMc00117 peptide methionine sulfoxide reductase YP_001412126.1 PFAM: MaoC domain protein dehydratase; KEGG: MaoC family protein YP_001412127.1 PFAM: OmpA/MotB domain protein; KEGG: pau:PA14_53500 hypothetical protein YP_001412128.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hne:HNE_2308 AMP-binding protein YP_001412129.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001412130.1 PFAM: sodium/hydrogen exchanger; KEGG: abo:ABO_1404 NhaP-type Na+/H+ and K+/H+ antiporters YP_001412131.1 PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0880 major facilitator superfamily MFS_1 YP_001412132.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: ani:AN6818.2 hypothetical protein YP_001412133.1 KEGG: bja:bll5942 flavin-binding family monooxygenase YP_001412134.1 PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0880 major facilitator superfamily MFS_1 YP_001412135.1 PFAM: Male sterility domain; KEGG: rpa:RPA2985 conserved unknownl protein YP_001412136.1 PFAM: regulatory protein MerR; Citrate synthase; KEGG: rxy:Rxyl_2556 citrate synthase YP_001412137.1 PFAM: Citrate synthase; KEGG: atu:Atu5306 citrate synthase YP_001412138.1 KEGG: sme:SMc03928 hypothetical protein YP_001412141.1 PFAM: ABC-2 type transporter; KEGG: sde:Sde_2924 putative ABC transporter inner membrane subunit YP_001412142.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psa:PST_3929 ABC transporter, ATP-binding protein YP_001412144.1 PFAM: Saccharopine dehydrogenase; KEGG: hal:VNG2166Cm hypothetical protein YP_001412147.1 KEGG: hne:HNE_0728 hypothetical protein YP_001412148.1 PFAM: helix-turn-helix domain protein; KEGG: sme:SMc00089 hypothetical protein YP_001412150.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ppd:Ppro_3541 alpha/beta hydrolase fold-3 domain protein YP_001412151.1 PFAM: ROSMUCR transcriptional regulator; KEGG: transcriptional regulator YP_001412152.1 PFAM: protein of unknown function DUF1457; KEGG: hne:HNE_0740 hypothetical protein YP_001412154.1 PFAM: helix-turn-helix domain protein; KEGG: nar:Saro_2070 transcriptional regulator, XRE family YP_001412155.1 PFAM: Chromosomal replication initiator DnaA domain; KEGG: mmr:Mmar10_0894 DnaA related protein YP_001412156.1 KEGG: rpe:RPE_1869 hypothetical protein YP_001412157.1 PFAM: Fe-S metabolism associated SufE; KEGG: nha:Nham_2625 Fe-S metabolism associated SufE YP_001412159.1 KEGG: mmr:Mmar10_0898 hypothetical protein YP_001412160.1 PFAM: protein of unknown function DUF1491; KEGG: hypothetical protein YP_001412161.1 KEGG: bja:bsl7372 hypothetical protein YP_001412162.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: swi:Swit_5127 peptide chain release factor 3 YP_001412163.1 PFAM: MscS Mechanosensitive ion channel; KEGG: mmr:Mmar10_0910 MscS mechanosensitive ion channel YP_001412164.1 KEGG: mba:Mbar_A0316 hypothetical protein YP_001412165.1 PFAM: regulatory protein TetR; KEGG: transcriptional regulator, TetR family YP_001412166.1 PFAM: FAD dependent oxidoreductase; KEGG: mag:amb2799 glycine/D-amino acid oxidase YP_001412168.1 PFAM: conserved hypothetical protein; KEGG: hypothetical protein YP_001412169.1 PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bms:BR0181 sulfite reductase (NADPH) hemoprotein beta-component YP_001412170.1 KEGG: mlo:msl3231 hypothetical protein YP_001412171.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_C0801 ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit YP_001412172.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mlo:mll1293 ATP-binding protein of ABC transporter YP_001412173.1 PFAM: NMT1/THI5 like domain protein; KEGG: hypothetical protein; K02051 sulfonate/nitrate/taurine transport system substrate-binding protein YP_001412174.1 KEGG: nar:Saro_2217 integral membrane protein-like YP_001412175.1 PFAM: protein of unknown function DUF1214; KEGG: nar:Saro_2218 protein of unknown function DUF1214 YP_001412176.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A1013 ABC transporter component YP_001412177.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: mes:Meso_0883 penicillin-binding protein, 1A family YP_001412178.1 PFAM: protein of unknown function UPF0153; KEGG: rpb:RPB_3505 uncharacterised conserved protein UCP006173 YP_001412179.1 KEGG: rle:RL1484 putative transmembrane protein YP_001412180.1 PFAM: phosphate transporter; KEGG: hne:HNE_3040 phosphate transporter family protein YP_001412181.1 PFAM: NUDIX hydrolase; KEGG: bra:BRADO4863 conserved hypothetical protein; putative hydrolase YP_001412182.1 PFAM: protein of unknown function DUF264; KEGG: bme:BMEI1350 phage DNA packaging protein YP_001412183.1 TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: rpe:RPE_1895 phage portal protein, HK97 family YP_001412184.1 KEGG: hypothetical protein YP_001412185.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: bov:BOV_0589 caudovirus prohead protease YP_001412186.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bms:BR0589 major capsid protein, HK97 family YP_001412187.1 KEGG: mlo:mlr8526 hypothetical protein YP_001412188.1 KEGG: rpc:RPC_1813 phage conserved hypothetical protein, phiE125 gp8 YP_001412189.1 TIGRFAM: phage head-tail adaptor, putative; PFAM: putative head-tail adaptor protein; KEGG: dvu:DVU1497 head-tail adaptor, putative YP_001412190.1 KEGG: rpe:RPE_1916 gene transfer agent (GTA) orfg8 YP_001412191.1 TIGRFAM: phage major tail protein, TP901-1 family; KEGG: rpe:RPE_1917 phage major tail protein, TP901-1 family YP_001412193.1 KEGG: atc:AGR_C_1758 hypothetical protein YP_001412194.1 KEGG: nwi:Nwi_1176 phage conserved hypothetical protein YP_001412195.1 KEGG: pde:Pden_2891 phage-related minor tail protein-like YP_001412196.1 KEGG: pde:Pden_2890 hypothetical protein YP_001412197.1 KEGG: nwi:Nwi_0795 hypothetical protein YP_001412198.1 TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; KEGG: nha:Nham_1425 putative phage cell wall peptidase, NlpC/P60 YP_001412199.1 KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein YP_001412200.1 KEGG: nwi:Nwi_0791 hypothetical protein YP_001412203.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mgi:Mflv_0296 short-chain dehydrogenase/reductase SDR YP_001412204.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_5357 acyl-CoA dehydrogenase-like protein YP_001412205.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rme:Rmet_5358 acyl-CoA dehydrogenase-like protein YP_001412206.1 PFAM: nitroreductase; KEGG: reu:Reut_B3607 nitroreductase YP_001412207.1 PFAM: Propeptide PepSY amd peptidase M4 YP_001412208.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: atc:AGR_C_1778 PopP protein YP_001412209.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: bra:BRADO2729 putative two-component sensor histidine kinase YP_001412210.1 PFAM: 17 kDa surface antigen; KEGG: rbe:RBE_1424 17 kD surface antigen precursor YP_001412211.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: maq:Maqu_3053 putative ribonuclease BN YP_001412212.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pde:Pden_0954 putative cold-shock DNA-binding domain protein YP_001412213.1 KEGG: rpc:RPC_1833 hypothetical protein YP_001412214.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bbr:BB4545 D-cysteine desulfhydrase YP_001412215.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bja:bll6906 putative isomerase YP_001412216.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mag:amb0567 signal transduction histidine kinase YP_001412217.1 PFAM: peptidase S45 penicillin amidase; KEGG: penicillin amidase family protein YP_001412218.1 SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_1932 tetratricopeptide TPR_2 YP_001412219.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dar:Daro_2852 hypothetical protein YP_001412220.1 PFAM: CcmE/CycJ protein; KEGG: nha:Nham_1438 CcmE/CycJ protein YP_001412221.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: rpc:RPC_1836 cytochrome c-type biogenesis protein CcmF YP_001412222.1 PFAM: cytochrome C biogenesis protein; KEGG: bja:blr3128 cytochrome C-type biogenesis protein YP_001412223.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: bme:BMEI1330 protease do YP_001412224.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mmr:Mmar10_0943 two component transcriptional regulator, winged helix family YP_001412225.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpa:RPA1932 sensor histidine kinase YP_001412226.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: mag:amb2683 glutamine synthetase adenylyltransferase YP_001412227.1 PFAM: FAD dependent oxidoreductase; KEGG: mlo:mlr3674 phytoene dehydrogenase YP_001412228.1 PFAM: amine oxidase; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mlo:mlr3676 phytoene dehydrogenase YP_001412229.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mlo:mlr3677 aminomethyltransferase YP_001412230.1 PFAM: Calcium-binding EF-hand-containing protein; KEGG: hne:HNE_1317 EF hand domain protein YP_001412231.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: RNA polymerase sigma-70 factor, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily YP_001412232.1 KEGG: mgm:Mmc1_3543 hypothetical protein YP_001412233.1 KEGG: rsp:RSP_0414 hypothetical protein YP_001412234.1 PFAM: FAD dependent oxidoreductase; KEGG: cya:CYA_1308 oxidoreductase, FAD-dependent YP_001412235.1 PFAM: glutamine synthetase catalytic region; KEGG: pau:PA14_03860 putative glutamine synthetase YP_001412236.1 KEGG: rpe:RPE_1951 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_001412237.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: noc:Noc_1314 peptidase M, neutral zinc metallopeptidase, zinc-binding site YP_001412238.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dge:Dgeo_1160 GCN5-related N-acetyltransferase YP_001412239.1 KEGG: mmr:Mmar10_0953 hypothetical protein YP_001412240.1 PFAM: acriflavin resistance protein; KEGG: ade:Adeh_1476 acriflavin resistance protein YP_001412241.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: bpa:BPP3833 putative HlyD-like secretion protein YP_001412242.1 PFAM: regulatory protein MarR; KEGG: mlo:mlr8230 transcriptional regulator YP_001412243.1 PFAM: beta-lactamase; KEGG: syn:sll1167 penicillin-binding protein 4 YP_001412244.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpa:RPA1708 putative acyl-CoA dehydrogenase YP_001412245.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase family protein YP_001412246.1 PFAM: Glutathione S-transferase domain; KEGG: mxa:MXAN_0089 glutathione S-transferase domain protein YP_001412247.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: bbr:BB0213 hypothetical protein YP_001412248.1 PFAM: regulatory protein MarR; KEGG: swi:Swit_4489 transcriptional regulator, MarR family YP_001412249.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: swi:Swit_2164 methyltransferase type 12 YP_001412250.1 PFAM: protein of unknown function UPF0074; KEGG: bja:blr7974 hypothetical protein YP_001412251.1 KEGG: bbt:BBta_p0020 hypothetical protein YP_001412252.1 KEGG: nwi:Nwi_0260 hypothetical protein YP_001412253.1 KEGG: bja:blr4654 hypothetical protein YP_001412254.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bja:blr4653 molecular chaperone DnaJ family YP_001412255.1 PFAM: Lytic transglycosylase catalytic; SMART: extracellular solute-binding protein family 3; KEGG: mmr:Mmar10_1005 lytic transglycosylase, catalytic YP_001412256.1 PFAM: OmpW family protein; KEGG: mmr:Mmar10_0595 OmpW family protein YP_001412257.1 KEGG: pae:PA2097 probable flavin-binding monooxygenase YP_001412258.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase YP_001412259.1 PFAM: Alkaline phosphatase; KEGG: she:Shewmr4_3312 twin-arginine translocation pathway signal YP_001412260.1 PFAM: PfkB domain protein; KEGG: gsu:GSU0692 carbohydrate kinase, PfkB family YP_001412261.1 PFAM: helix-turn-helix- domain containing protein AraC type; Acetamidase/Formamidase; KEGG: bxe:Bxe_B0602 transcriptional regulator, AraC family with acetamidase/formamidase activity YP_001412262.1 PFAM: Acetamidase/Formamidase; KEGG: bxe:Bxe_B0603 predicted acetamidase/formamidase YP_001412263.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ecv:APECO1_3372 hypothetical protein YP_001412264.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: sil:SPO3681 Rieske 2Fe-2S domain protein YP_001412265.1 PFAM: NADPH-dependent FMN reductase; KEGG: pmy:Pmen_1997 NADPH-dependent FMN reductase YP_001412266.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bja:blr0937 putative dioxygenase YP_001412267.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_2942 short-chain dehydrogenase/reductase SDR YP_001412268.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: rme:Rmet_4136 taurine catabolism dioxygenase TauD/TfdA YP_001412269.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: TonB-dependent receptor; K02014 iron complex outermembrane recepter protein YP_001412270.1 PFAM: major facilitator superfamily MFS_1; KEGG: plu:plu3814 hypothetical protein YP_001412271.1 PFAM: luciferase family protein; KEGG: plu:plu3815 hypothetical protein YP_001412272.1 PFAM: isochorismatase hydrolase; KEGG: hne:HNE_1257 isochorismatase family protein YP_001412273.1 KEGG: hne:HNE_1256 hypothetical protein YP_001412274.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: mag:amb2577 actinorhodin polyketide dimerase YP_001412275.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mag:amb3549 periplasmic protein TonB, links inner and outer membranes YP_001412276.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mpt:Mpe_A1755 biopolymer transport ExbB protein YP_001412277.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: azo:azo0233 putative biopolymer transport protein ExbD YP_001412278.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cvi:CV1986 biopolymer transport exbD transmembrane protein YP_001412279.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: psa:PST_2196 probable transcriptional regulator YP_001412280.1 PFAM: outer membrane efflux protein; KEGG: bam:Bamb_6370 type I secretion outer membrane protein, TolC family YP_001412281.1 PFAM: C-type lectin domain protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein YP_001412282.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_B0690 ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family YP_001412283.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: bam:Bamb_6372 type I secretion membrane fusion protein, HlyD family YP_001412284.1 KEGG: swi:Swit_5200 putative nitric-oxide reductase YP_001412285.1 KEGG: azo:azo3083 conserved hypothetical membrane protein YP_001412286.1 PFAM: NnrS family protein; KEGG: rde:RD1_1694 NnrS protein, putative YP_001412287.1 KEGG: hne:HNE_1549 hypothetical protein YP_001412288.1 TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: mes:Meso_4276 pseudoazurin YP_001412289.1 TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase type 2; KEGG: pna:Pnap_1326 nitrite reductase, copper-containing YP_001412290.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: rpa:RPA4143 putative nitric oxide responsive transcriptional regulator NnrR, Crp/Fnr family YP_001412291.1 KEGG: rsq:Rsph17025_0969 hypothetical protein YP_001412292.1 TIGRFAM: K+-transporting ATPase, F subunit YP_001412293.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpc:RPC_4549 potassium-translocating P-type ATPase, B subunit YP_001412294.1 TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; KEGG: rsq:Rsph17025_3784 osmosensitive K+ channel histidine kinase-like protein YP_001412295.1 PFAM: K transporting ATPase KdpC subunit; KEGG: rsq:Rsph17025_3785 osmosensitive K+ channel His kinase sensor YP_001412296.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bra:BRADO5826 response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) YP_001412297.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_1612 enoyl-CoA hydratase/isomerase YP_001412298.1 PFAM: major facilitator superfamily MFS_1; KEGG: eli:ELI_00290 hypothetical protein YP_001412299.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_0378 short-chain dehydrogenase/reductase SDR YP_001412300.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_0378 short-chain dehydrogenase/reductase SDR YP_001412301.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: hne:HNE_3525 amidohydrolase family protein/D-aminoacylase domain protein YP_001412302.1 PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_19810 hypothetical protein YP_001412303.1 PFAM: aldehyde dehydrogenase; KEGG: nar:Saro_2503 aldehyde dehydrogenase (NAD+) YP_001412304.1 PFAM: AMP-dependent synthetase and ligase; KEGG: bra:BRADO6529 putative acyl-CoA ligase YP_001412305.1 KEGG: bxe:Bxe_B2367 hypothetical protein YP_001412306.1 PFAM: protein of unknown function DUF35; KEGG: bxe:Bxe_B2366 hypothetical protein YP_001412307.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_0341 enoyl-CoA hydratase/isomerase YP_001412308.1 PFAM: AMP-dependent synthetase and ligase; KEGG: swi:Swit_1600 AMP-dependent synthetase and ligase YP_001412310.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_2915 acyl-CoA dehydrogenase family protein YP_001412311.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase family protein YP_001412312.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: eli:ELI_10750 regulatory protein, LysR:LysR, substrate-binding YP_001412313.1 PFAM: AMP-dependent synthetase and ligase; KEGG: swi:Swit_1600 AMP-dependent synthetase and ligase YP_001412314.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sil:SPO0190 oxidoreductase, GMC family YP_001412315.1 PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_1381 aldehyde dehydrogenase (NAD+) YP_001412316.1 PFAM: MaoC domain protein dehydratase; KEGG: reu:Reut_B3559 hypothetical protein YP_001412317.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3560 L-carnitine dehydratase/bile acid-inducible protein F YP_001412318.1 PFAM: RES domain protein; KEGG: nha:Nham_1974 hypothetical protein YP_001412322.1 KEGG: vvy:VVA0689 hypothetical protein YP_001412323.1 KEGG: rsh:Rsph17029_3200 ATPase-like protein YP_001412325.1 TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: nwi:Nwi_3093 helix-turn-helix protein, CopG YP_001412326.1 PFAM: plasmid stabilization system; KEGG: mlo:msr1301 hypothetical protein YP_001412327.1 PFAM: SMC domain protein; KEGG: neu:NE2310 ABC transporter YP_001412328.1 PFAM: integrase family protein; KEGG: hne:HNE_0292 site-specific recombinase, phage integrase family YP_001412329.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: bja:blr3734 tRNA-dihydrouridine synthase A YP_001412330.1 PFAM: protein of unknown function DUF81; KEGG: atc:AGR_C_3499 hypothetical protein YP_001412331.1 PFAM: phospholipase/Carboxylesterase; KEGG: bja:bll1350 hypothetical protein YP_001412332.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bra:BRADO0757 putative phosphomannomutase/phosphoglucomutase (PMM / PGM) YP_001412333.1 KEGG: mlo:mlr0565 hypothetical protein YP_001412334.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: bmb:BruAb1_1298 CobA, uroporphyrin-III C-methyltransferase YP_001412335.1 PFAM: PhnA protein; KEGG: plu:plu1533 unnamed protein product; similar to alkylphosphonate uptake protein PhnA YP_001412336.1 PFAM: protein of unknown function DUF1289; KEGG: hne:HNE_2096 hypothetical protein YP_001412337.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: ret:RHE_CH02443 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase protein YP_001412338.1 KEGG: bra:BRADO5009 putative intracellular septation protein YP_001412339.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_2094 acyl-CoA dehydrogenase family protein YP_001412340.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_2093 acyl-CoA dehydrogenase YP_001412341.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sme:SMc04212 putative sensor histidine kinase transmembrane protein YP_001412342.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001412343.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: hne:HNE_2647 antibiotic biosynthesis monooxygenase domain protein YP_001412344.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: acyl-CoA dehydrogenase family protein YP_001412345.1 PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: pcr:Pcryo_1086 substrate-binding region of ABC-type glycine betaine transport system YP_001412346.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: 3-oxoacyl-(acyl-carrier-protein) reductase, putative YP_001412347.1 PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: bbt:BBta_5279 putative membrane protein of unknown function with nucleoside transporter domain YP_001412348.1 PFAM: Glutathione S-transferase domain; KEGG: hne:HNE_2566 glutathione S-transferase YP_001412349.1 PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_0269 major facilitator superfamily MFS_1 YP_001412350.1 PFAM: regulatory protein ArsR; KEGG: bja:blr0846 transcriptional regulatory protein YP_001412351.1 PFAM: protein of unknown function DUF1428; KEGG: bba:Bd3653 alkaline phosphatase YP_001412352.1 PFAM: protein of unknown function DUF899 thioredoxin family protein; KEGG: pde:Pden_3150 protein of unknown function DUF899, thioredoxin family protein YP_001412353.1 PFAM: luciferase family protein; KEGG: bat:BAS1874 bacterial luciferase family protein YP_001412354.1 PFAM: thioesterase superfamily protein; KEGG: hypothetical protein YP_001412355.1 PFAM: protein of unknown function DUF1457 YP_001412356.1 PFAM: protein of unknown function DUF1457; KEGG: sme:SMc01000 hypothetical protein YP_001412357.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: mag:amb2599 acyl-CoA dehydrogenase YP_001412358.1 PFAM: regulatory protein TetR; KEGG: dde:Dde_1892 putative transcriptional regulator, TetR family YP_001412359.1 PFAM: Abortive infection protein; KEGG: ecs:ECs1085 hypothetical membrane protein YP_001412360.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: mlo:mll0558 hypothetical protein YP_001412361.1 PFAM: alpha/beta hydrolase fold; KEGG: mag:amb4214 lysophospholipase YP_001412362.1 KEGG: pol:Bpro_2089 patatin YP_001412363.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bja:blr0257 two-component sensor histidine kinase YP_001412364.1 PFAM: response regulator receiver; KEGG: bja:blr0259 two-component response regulator YP_001412365.1 PFAM: alpha/beta hydrolase fold; KEGG: atc:AGR_L_210 non-heme chloroperoxidase (chloride peroxidase) (CPO-P) (chloroperoxidase P) YP_001412366.1 KEGG: mpt:Mpe_A0156 hypothetical protein YP_001412367.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: swi:Swit_4555 phosphoglycolate phosphatase YP_001412368.1 KEGG: mmr:Mmar10_0622 hypothetical protein YP_001412369.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acr:Acry_1192 GCN5-related N-acetyltransferase YP_001412370.1 KEGG: bpa:BPP0341 hypothetical protein YP_001412371.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: reh:H16_B1537 succinate-semialdehyde dehydrogenase (NADP+) YP_001412372.1 TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; KEGG: bms:BR1010 ribose 5-phosphate isomerase A YP_001412373.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: mmr:Mmar10_0973 glutathione-disulfide reductase YP_001412374.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; KEGG: bja:blr3778 phospho-2-dehydro-3-deoxyheptonate aldolase YP_001412375.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: bra:BRADO3166 putative NADP-dependent oxidoreductase YP_001412376.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: alcohol dehydrogenase, zinc-containing YP_001412377.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A3237 RND efflux system, outer membrane lipoprotein, NodT YP_001412378.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: rru:Rru_A3236 hypothetical protein YP_001412379.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: maq:Maqu_1339 efflux transporter, RND family, MFP subunit YP_001412380.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr0103 probable oxidoreductase YP_001412381.1 TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; ExsB family protein; KEGG: bms:BR1015 NH(3)-dependent NAD+ synthetase YP_001412382.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: mmr:Mmar10_0986 glutamyl-tRNA synthetase YP_001412383.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: bra:BRADO4696 putative isopropylmalate synthase (LeuA-like) YP_001412384.1 KEGG: gvi:gll1194 hypothetical protein YP_001412385.1 PFAM: homocysteine S-methyltransferase; KEGG: mes:Meso_0624 homocysteine S-methyltransferase YP_001412386.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_B0937 transcriptional regulator, AraC-family YP_001412387.1 KEGG: bra:BRADO6928 conserved hypothetical protein; putative signal peptide YP_001412388.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: mes:Meso_0970 RarD protein, DMT superfamily transporter YP_001412389.1 PFAM: conserved hypothetical protein; KEGG: rpe:RPE_2006 conserved hypothetical protein 730 YP_001412390.1 PFAM: Peptidoglycan-binding LysM; KEGG: mmr:Mmar10_0991 peptidoglycan-binding LysM YP_001412391.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: bpe:BP0899 ABC transporter, ATP-binding protein YP_001412392.1 TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related; KEGG: rsh:Rsph17029_2374 phosphatidylserine decarboxylase related protein YP_001412393.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rpb:RPB_3366 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001412394.1 KEGG: mlo:mll3672 methyl transferase-like protein YP_001412395.1 KEGG: abo:ABO_1242 hypothetical protein YP_001412396.1 KEGG: bba:Bd3071 regulatory protein YP_001412397.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mmr:Mmar10_0950 multi-sensor signal transduction histidine kinase YP_001412398.1 TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: azo:azo0712 undecaprenol kinase YP_001412399.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: noc:Noc_2054 Glu/Leu/Phe/Val dehydrogenase YP_001412400.1 PFAM: 17 kDa surface antigen; KEGG: rno:681865 hypothetical protein LOC681865 YP_001412401.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_2703 enoyl-CoA hydratase/isomerase YP_001412402.1 PFAM: Amidohydrolase 3; KEGG: hne:HNE_3278 amidohydrolase family protein YP_001412403.1 PFAM: regulatory protein TetR; KEGG: hypothetical protein YP_001412404.1 KEGG: eli:ELI_09820 hypothetical protein YP_001412405.1 KEGG: pau:PA14_37170 hypothetical protein YP_001412406.1 KEGG: hne:HNE_1664 hypothetical protein YP_001412407.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: hne:HNE_2024 PHA-synthase 2 YP_001412408.1 TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; KEGG: eli:ELI_07295 poly(3-hydroxyalkanoate) depolymerase YP_001412409.1 PFAM: sulfatase; KEGG: sulfatase family protein YP_001412410.1 PFAM: protein of unknown function DUF323; KEGG: mav:MAV_4458 sulfatase-modifying factor 1 YP_001412411.1 PFAM: ATP-binding region ATPase domain protein; KEGG: rpa:RPA1490 bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB4 YP_001412412.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: dra:DR0987 DNA-binding response regulator YP_001412413.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mva:Mvan_3995 conserved hypothetical protein YP_001412414.1 PFAM: amidohydrolase 2; KEGG: swi:Swit_1765 amidohydrolase 2 YP_001412415.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mva:Mvan_3997 short-chain dehydrogenase/reductase SDR YP_001412416.1 PFAM: protein of unknown function DUF1486; Limonene-12-epoxide hydrolase; KEGG: nfa:nfa41920 hypothetical protein YP_001412417.1 PFAM: phospholipase D/Transphosphatidylase; SNARE associated Golgi protein; KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase YP_001412418.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mes:Meso_4026 endonuclease/exonuclease/phosphatase YP_001412419.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: psa:PST_0061 probable hydratase YP_001412420.1 catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation YP_001412421.1 PFAM: amino acid permease-associated region; KEGG: ppr:PBPRB1917 hypothetical amino acid permease YP_001412422.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: lmf:LMOf2365_0047 peptidyl-arginine deiminase-like protein YP_001412423.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_001412424.1 TIGRFAM: TonB family protein; KEGG: bbt:BBta_2230 energy transducer YP_001412425.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: hne:HNE_1415 NADP-dependent oxidoreductase, L4BD family YP_001412426.1 PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mpt:Mpe_A0892 ATP-dependent transcriptional regulator-like protein protein YP_001412427.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: bur:Bcep18194_B1204 hydantoinase/oxoprolinase YP_001412428.1 PFAM: Acetone carboxylase gamma subunit; KEGG: bur:Bcep18194_B1205 acetone carboxylase gamma subunit-like YP_001412429.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pna:Pnap_1163 5-oxoprolinase (ATP-hydrolyzing) YP_001412430.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: pna:Pnap_1162 hydantoinase B/oxoprolinase YP_001412431.1 KEGG: bur:Bcep18194_B1208 hypothetical protein YP_001412432.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_001412433.1 KEGG: mpt:Mpe_A0397 exporters of the RND superfamily YP_001412434.1 KEGG: mpt:Mpe_A0398 hypothetical protein YP_001412435.1 KEGG: mpt:Mpe_B0584 hypothetical protein YP_001412436.1 KEGG: mpt:Mpe_A0888 hypothetical protein YP_001412437.1 KEGG: mpt:Mpe_A0889 hypothetical protein YP_001412438.1 PFAM: glucose sorbosone dehydrogenase; KEGG: pmy:Pmen_0465 glucose sorbosone dehydrogenase YP_001412439.1 KEGG: pha:PSHAa1706 hypothetical protein ; membrane protein YP_001412440.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_0673 tripartite ATP-independent periplasmic transporter, DctQ component YP_001412441.1 PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmy:Pmen_0674 TRAP C4-dicarboxylate transport system permease DctM subunit YP_001412442.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_0675 TRAP dicarboxylate transporter-DctP subunit YP_001412443.1 KEGG: hne:HNE_1286 cyclododecanone monooxygenase YP_001412444.1 PFAM: Ppx/GppA phosphatase; KEGG: mes:Meso_0471 Ppx/GppA phosphatase YP_001412445.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pde:Pden_3990 ribosomal RNA methyltransferase RrmJ/FtsJ YP_001412446.1 TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: bra:BRADO3165 inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (ImpD) YP_001412447.1 PFAM: Fmu (Sun) domain protein; KEGG: rpd:RPD_2268 Fmu (Sun) YP_001412448.1 KEGG: zmo:ZMO1319 hypothetical protein YP_001412449.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001412450.1 PFAM: integrase family protein; KEGG: rpa:RPA2204 integrase YP_001412451.1 PFAM: Prophage CP4-57 regulatory; KEGG: rpa:RPA2205 hypothetical protein YP_001412452.1 KEGG: dno:DNO_0175 conserved hypothetical protein VrlQ YP_001412453.1 PFAM: PglZ domain protein; KEGG: dno:DNO_0176 conserved hypothetical protein VrlP YP_001412454.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: ace:Acel_0816 helicase domain protein YP_001412455.1 KEGG: ace:Acel_0814 hypothetical protein YP_001412456.1 KEGG: chu:CHU_1497 conserved hypothetical protein; possible histidine kinase YP_001412457.1 PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0482 divergent AAA ATP YP_001412458.1 KEGG: ace:Acel_0812 hypothetical protein YP_001412459.1 KEGG: dno:DNO_0182 conserved hypothetical protein VrlJ YP_001412460.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: vei:Veis_2614 phage transcriptional regulator, AlpA YP_001412461.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family YP_001412462.1 KEGG: gbe:GbCGDNIH1_1065 hypothetical protein YP_001412463.1 PFAM: conjugation TrbI family protein; KEGG: mes:Meso_0500 conjugation TrbI-like protein YP_001412464.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX YP_001412465.1 PFAM: Conjugal transfer protein; KEGG: mes:Meso_0502 conjugal transfer protein YP_001412466.1 type IV secretion VirB6 family YP_001412467.1 KEGG: mes:Meso_2319 hypothetical protein YP_001412468.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pde:Pden_1480 conjugal transfer protein TrbJ YP_001412469.1 type IV secretion system VirB4 family YP_001412470.1 KEGG: mlo:mll9611 conjugal transfer protein trbB YP_001412471.1 PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_1483 conjugal transfer protein TrbC YP_001412472.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: mes:Meso_2324 type II secretion system protein E YP_001412473.1 KEGG: bja:bll0042 hypothetical protein YP_001412474.1 type IV secretion VirD4 coupling protein family YP_001412475.1 KEGG: pde:Pden_1507 hypothetical protein YP_001412476.1 PFAM: Lytic transglycosylase catalytic; KEGG: pde:Pden_3185 lytic transglycosylase, catalytic YP_001412477.1 PFAM: protein of unknown function DUF736; KEGG: bbt:BBta_7736 hypothetical protein YP_001412478.1 KEGG: mes:Meso_2333 conjugal transfer protein precursor YP_001412479.1 KEGG: bbt:BBta_7734 hypothetical protein YP_001412480.1 KEGG: bja:bsl0049 hypothetical protein YP_001412481.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mes:Meso_2336 cobyrinic acid a,c-diamide synthase YP_001412482.1 KEGG: pde:Pden_1512 replication protein A YP_001412483.1 KEGG: mes:Meso_3841 putative transcriptional regulator YP_001412484.1 KEGG: pde:Pden_3174 hypothetical protein YP_001412485.1 KEGG: mes:Meso_0527 hypothetical protein YP_001412486.1 KEGG: mes:Meso_0528 transcriptional regulator, XRE family YP_001412488.1 PFAM: protein of unknown function DUF736; KEGG: mlo:mlr9738 hypothetical protein YP_001412489.1 KEGG: nwi:Nwi_2132 hypothetical protein YP_001412490.1 KEGG: mlo:msr9708 hypothetical protein YP_001412491.1 PFAM: PilT protein domain protein; KEGG: rle:pRL120076 putative plasmid stability protein StbB YP_001412492.1 KEGG: rle:pRL120075 putative plasmid stability protein StbC YP_001412493.1 KEGG: pde:Pden_1531 hypothetical protein YP_001412494.1 KEGG: bbt:BBta_7718 hypothetical protein YP_001412495.1 KEGG: pde:Pden_1533 probable methylase/helicase YP_001412496.1 KEGG: pde:Pden_1539 hypothetical protein YP_001412497.1 KEGG: mes:Meso_3821 hypothetical protein YP_001412498.1 KEGG: pde:Pden_1536 hypothetical protein YP_001412499.1 PFAM: ParB domain protein nuclease; KEGG: pde:Pden_1541 ParB-like partition proteins YP_001412500.1 PFAM: domain of unknown function DUF1738; KEGG: bbt:BBta_7394 putative ArdC antirestriction protein YP_001412501.1 KEGG: mlo:mll5901 hypothetical protein YP_001412502.1 PFAM: Domain of unknown function DUF1814; KEGG: gbe:GbCGDNIH1_1177 hypothetical protein YP_001412503.1 KEGG: cps:CPS_2955 hypothetical protein YP_001412505.1 PFAM: PfkB domain protein; KEGG: mag:amb4184 sugar kinase YP_001412506.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_001412507.1 PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: swi:Swit_2565 phosphoribosyl-ATP pyrophosphohydrolase YP_001412508.1 PFAM: pentapeptide repeat protein; KEGG: pentapeptide repeat family protein YP_001412509.1 PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: bra:BRADO2821 conserved hypothetical protein; putative adenylate cyclase with a CHAD domain YP_001412510.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: bov:BOV_2005 imidazoleglycerol phosphate synthase, cyclase subunit YP_001412511.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: sme:SMc02570 probable phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase protein YP_001412512.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: atc:AGR_C_64 amidotransferase HisH YP_001412513.1 KEGG: rpc:RPC_0305 hypothetical protein YP_001412514.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: rru:Rru_A3597 imidazoleglycerol-phosphate dehydratase YP_001412515.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mlo:mlr4322 hypothetical protein YP_001412516.1 heat shock protein involved in degradation of misfolded proteins YP_001412517.1 heat shock protein involved in degradation of misfolded proteins YP_001412518.1 KEGG: ret:RHE_PE00123 putative ABC transporter, substrate-binding protein YP_001412519.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: bxe:Bxe_B1380 2OG-Fe(II) oxygenase superfamily YP_001412520.1 KEGG: psa:PST_1996 hypothetical protein YP_001412521.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nar:Saro_0599 transcriptional regulator, LysR family YP_001412522.1 PFAM: helix-turn-helix domain protein; KEGG: bmb:BruAb1_2052 hypothetical protein YP_001412523.1 PFAM: Smr protein/MutS2; KEGG: bja:blr0644 hypothetical protein YP_001412524.1 PFAM: MltA domain protein; 3D domain protein; KEGG: rsp:RSP_1240 putative membrane-bound lytic murein transglycosylase A transmembrane protein YP_001412525.1 PFAM: import inner membrane translocase subunit Tim44; KEGG: nha:Nham_0117 import inner membrane translocase, subunit Tim44 YP_001412526.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: rru:Rru_A3609 FxsA cytoplasmic membrane protein YP_001412527.1 TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: rpa:RPA0302 putative protein-export protein SecB YP_001412528.1 KEGG: rsq:Rsph17025_2673 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_001412529.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mva:Mvan_2052 glyoxalase/bleomycin resistance protein/dioxygenase YP_001412530.1 TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; KEGG: dephospho-CoA kinase YP_001412531.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: mag:amb4547 shikimate 5-dehydrogenase YP_001412532.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sme:SMc02792 conserved hypothetical protein YP_001412533.1 PFAM: protein of unknown function DUF299; KEGG: hypothetical protein; K09773 hypothetical protein YP_001412534.1 TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); KEGG: rru:Rru_A3616 uroporphyrinogen decarboxylase HemE YP_001412535.1 PFAM: ferrochelatase; KEGG: mag:amb4551 protoheme ferro-lyase YP_001412536.1 PFAM: conserved hypothetical protein; KEGG: bja:bll0636 hypothetical protein YP_001412537.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001412538.1 PFAM: protein of unknown function DUF1457 YP_001412539.1 PFAM: alpha/beta hydrolase fold; KEGG: psa:PST_2434 hydrolase, alpha/beta fold family YP_001412540.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: hch:HCH_04332 hypothetical protein YP_001412541.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll6137 quinone oxidoreductase YP_001412542.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpa:RPA1283 homoserine/homoserine lactone/threonine efflux protein YP_001412543.1 PFAM: dienelactone hydrolase; KEGG: carboxymethylenebutenolidase YP_001412545.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_I0383 glycine cleavage system transcriptional activator YP_001412546.1 PFAM: GCN5-related N-acetyltransferase; KEGG: mpa:MAP0089 phosphinothricin N-acetyltransferase YP_001412547.1 PFAM: protein of unknown function DUF255; KEGG: nwi:Nwi_0099 protein of unknown function DUF255 YP_001412548.1 KEGG: mag:amb4558 hypothetical protein YP_001412549.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001412550.1 KEGG: pna:Pnap_2858 insertion element protein YP_001412551.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001412552.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: mag:amb0003 predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division YP_001412553.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: nha:Nham_0103 cobyrinic acid a,c-diamide synthase YP_001412554.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sil:SPO0004 chromosome partitioning protein ParB YP_001412555.1 required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA YP_001412556.1 KEGG: sal:Sala_3019 hypothetical protein YP_001412557.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: mlo:mll4077 leucyl-tRNA synthetase YP_001412558.1 KEGG: rru:Rru_A3632 hypothetical protein YP_001412559.1 KEGG: rru:Rru_A2211 porin, gram-negative type YP_001412560.1 PFAM: sulfotransferase; KEGG: sfr:Sfri_0789 sulfotransferase YP_001412561.1 PFAM: thiamine monophosphate synthase; KEGG: hypothetical protein YP_001412562.1 PFAM: alanine racemase domain protein; KEGG: rpa:RPA0285 protein of unknown function UPF0001 YP_001412563.1 KEGG: mmr:Mmar10_2951 hypothetical protein YP_001412564.1 KEGG: mag:amb0021 hypothetical protein YP_001412565.1 PFAM: sulfotransferase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: swi:Swit_3141 sulfotransferase YP_001412566.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mlo:mlr4237 two-component response regulator YP_001412567.1 KEGG: pmy:Pmen_2729 thioesterase superfamily protein YP_001412568.1 PFAM: cyclic nucleotide-binding; KEGG: mlo:mlr3256 hypothetical protein YP_001412569.1 PFAM: thioesterase superfamily protein; KEGG: sen:SACE_1886 phenylacetic acid degradation-related protein YP_001412570.1 PFAM: regulatory protein TetR; KEGG: cvi:CV2384 probable transcriptional regulator, TetR family YP_001412571.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bmb:BruAb1_1979 Xth-2, exodeoxyribonuclease III YP_001412572.1 KEGG: mmr:Mmar10_2947 hypothetical protein YP_001412573.1 PFAM: aminotransferase class-III; KEGG: pfl:PFL_5927 hypothetical protein YP_001412574.1 PFAM: glutamine synthetase catalytic region; KEGG: rru:Rru_A2079 glutamate--ammonia ligase YP_001412575.1 PFAM: peptidase C26; KEGG: bte:BTH_II1945 glutamine amidotransferase, class I YP_001412576.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rde:RD1_0032 outer membrane lipoprotein carrier protein, putative YP_001412577.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: atc:AGR_C_5003 cell division protein ftsK homolog YP_001412578.1 PFAM: aminotransferase class I and II; KEGG: mag:amb0015 aspartate/tyrosine/aromatic aminotransferase YP_001412579.1 PFAM: Rh family protein/ammonium transporter; KEGG: pmy:Pmen_2999 Rh family protein/ammonium transporter YP_001412580.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: jan:Jann_4057 ammonium transporter YP_001412581.1 PFAM: nitrogen regulatory protein P-II; KEGG: sme:SMc03806 probable nitrogen regulatory protein PII 2 YP_001412582.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: nha:Nham_0084 ammonium transporter YP_001412583.1 PFAM: Pyrrolo-quinoline quinone; KEGG: eli:ELI_14570 alcohol dehydrogenase large subunit YP_001412584.1 PFAM: Amidase; KEGG: rsq:Rsph17025_2898 amidase YP_001412585.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rde:RD1_0036 2-octaprenyl-6-methoxyphenol hydroxylase YP_001412586.1 PFAM: protein of unknown function DUF971; KEGG: acr:Acry_2126 protein of unknown function DUF971 YP_001412587.1 PFAM: protein of unknown function DUF343; KEGG: mmr:Mmar10_2939 protein of unknown function DUF343 YP_001412588.1 PFAM: peptidase S16 lon domain protein; KEGG: nwi:Nwi_0074 peptidase S16 YP_001412589.1 TIGRFAM: thioredoxin; PFAM: Tetratricopeptide TPR_2 repeat protein; Thioredoxin domain; SMART: Tetratricopeptide domain protein; KEGG: bja:blr0594 thioredoxin YP_001412591.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: mmr:Mmar10_2937 YbaK/prolyl-tRNA synthetase associated region YP_001412592.1 PFAM: SEC-C motif domain protein; KEGG: mag:amb0006 hypothetical protein YP_001412593.1 PFAM: major facilitator superfamily MFS_1; KEGG: hypothetical protein; K06902 MFS transporter, UMF1 family YP_001412594.1 PFAM: major facilitator superfamily MFS_1; KEGG: nwi:Nwi_0160 major facilitator superfamily MFS_1 YP_001412595.1 KEGG: hne:HNE_3487 hypothetical protein YP_001412596.1 TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; KEGG: bms:BR1816 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001412597.1 PFAM: thioesterase superfamily protein; KEGG: rpe:RPE_2404 uncharacterized domain 1 YP_001412598.1 PFAM: Heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein YP_001412599.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: nar:Saro_0104 ribulose-phosphate 3-epimerase YP_001412600.1 TIGRFAM: methyltransferase FkbM family; KEGG: nmu:Nmul_A0295 methyltransferase FkbM YP_001412601.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: lbl:LBL_1095 methylase/methyltransferase YP_001412602.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_7491 glycosyl transferase, family 2 YP_001412603.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: rpc:RPC_0025 Fmu (Sun) YP_001412604.1 PFAM: peptidase M48 Ste24p; KEGG: rpb:RPB_4635 peptidase M48, Ste24p YP_001412605.1 PFAM: protein of unknown function DUF1674; KEGG: mlo:msl4095 hypothetical protein YP_001412606.1 PFAM: Extensin family protein; KEGG: pst:PSPTO_1513 hypothetical protein YP_001412607.1 PFAM: nuclease (SNase domain protein); KEGG: rpe:RPE_0032 nuclease (SNase domain protein) YP_001412608.1 TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA0211 acetyl-CoA synthetase YP_001412609.1 KEGG: sil:SPOA0441 hypothetical protein YP_001412610.1 KEGG: rru:Rru_A3032 hypothetical protein YP_001412611.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_0162 CaiB/BaiF CoA-transferase, family III YP_001412612.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO1988 hypothetical protein YP_001412613.1 PFAM: protein of unknown function DUF1330; KEGG: bja:blr0490 hypothetical protein YP_001412614.1 PFAM: Creatininase; KEGG: mmr:Mmar10_0033 creatininase YP_001412615.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: pnu:Pnuc_0348 death-on-curing family protein YP_001412616.1 PFAM: MazG nucleotide pyrophosphohydrolase YP_001412617.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: ferredoxin, Rieske 2Fe-2S family YP_001412618.1 PFAM: protein of unknown function DUF55; KEGG: mes:Meso_3206 protein of unknown function DUF55 YP_001412619.1 PFAM: YCII-related; KEGG: bov:BOV_1818 hypothetical protein YP_001412620.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: mmr:Mmar10_0038 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_001412621.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_0134 transcriptional regulator, TetR family YP_001412624.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: gbe:GbCGDNIH1_2223 caprolactone hydrolase YP_001412625.1 TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; KEGG: mmr:Mmar10_0039 putative metalloendopeptidase, glycoprotease family YP_001412626.1 TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: pde:Pden_3630 porphobilinogen deaminase YP_001412627.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: mag:amb4421 uroporphyrinogen-III synthase YP_001412628.1 KEGG: ret:RHE_CH03906 hypothetical protein YP_001412629.1 PFAM: HemY domain protein; KEGG: mes:Meso_3199 HemY-like YP_001412630.1 PFAM: alpha/beta hydrolase fold; KEGG: eli:ELI_02370 hydrolase, alpha/beta hydrolase fold family protein YP_001412631.1 PFAM: homospermidine synthase; KEGG: mag:amb2266 homospermidine synthase YP_001412633.1 PFAM: nitrogen regulatory protein P-II; KEGG: bcn:Bcen_2252 nitrogen regulatory protein P-II YP_001412634.1 KEGG: rpa:RPA1579 L-carnitine dehydratase/bile acid-inducible protein F YP_001412635.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mag:amb0567 signal transduction histidine kinase YP_001412636.1 KEGG: rpa:RPA2027 ATPase:protein of unknown function DUF87 YP_001412637.1 PFAM: protein of unknown function DUF461; KEGG: har:HEAR2923 Conserved hypothetical protein. putative conserved domain YP_001412638.1 PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein YP_001412639.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: rpe:RPE_1646 excinuclease ABC, C subunit domain protein YP_001412640.1 PFAM: protein of unknown function DUF1329; KEGG: cps:CPS_2805 hypothetical protein YP_001412641.1 KEGG: pfl:PFL_3279 BNR/Asp-box repeat protein YP_001412642.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swi:Swit_1014 enoyl-CoA hydratase/isomerase YP_001412643.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: swi:Swit_1013 acyl-CoA dehydrogenase domain protein YP_001412644.1 PFAM: Acyl-CoA dehydrogenase type 2 domain; KEGG: rso:RS05205 probable transmembrane protein YP_001412645.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase YP_001412646.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group YP_001412647.1 PFAM: protein of unknown function YGGT; KEGG: rru:Rru_A3527 protein of unknown function YGGT YP_001412648.1 PFAM: protein of unknown function DUF167; KEGG: bbt:BBta_0270 hypothetical protein YP_001412649.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: rpb:RPB_0108 methenyltetrahydrofolate cyclohydrolase YP_001412650.1 PFAM: aldo/keto reductase; KEGG: ath:AT4G33670 aldo-keto reductase/ oxidoreductase YP_001412651.1 KEGG: hypothetical protein; K09982 hypothetical protein YP_001412652.1 PFAM: beta-lactamase; KEGG: bcz:BCZK2932 penicillin-binding protein YP_001412653.1 PFAM: Inorganic pyrophosphatase; KEGG: atu:Atu2661 inorganic pyrophosphatase YP_001412654.1 PFAM: argininosuccinate synthase; KEGG: rde:RD1_0417 argininosuccinate synthase YP_001412655.1 PFAM: DSBA oxidoreductase; KEGG: eba:ebA2541 2-hydroxychromene-2-carboxylate isomerase family protein YP_001412656.1 KEGG: swi:Swit_3983 antibiotic biosynthesis monooxygenase YP_001412657.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rpe:RPE_0038 radical SAM enzyme, Cfr family YP_001412658.1 KEGG: bov:BOV_0077 hypothetical protein YP_001412659.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_A2099 zinc-containing alcohol dehydrogenase superfamily YP_001412660.1 KEGG: xac:XAC0836 hypothetical protein YP_001412661.1 PFAM: beta-lactamase; KEGG: hne:HNE_1031 putative esterase YP_001412662.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bja:bll7835 hypothetical protein YP_001412663.1 PFAM: protein of unknown function DUF1232; KEGG: hne:HNE_3130 hypothetical protein YP_001412664.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_3131 oxidoreductase, short chain dehydrogenase/reductase family protein YP_001412665.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rpb:RPB_0099 transcriptional coactivator/pterin dehydratase YP_001412666.1 PFAM: protein of unknown function DUF1025; KEGG: rpd:RPD_0499 protein of unknown function DUF1025 YP_001412667.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: mes:Meso_3349 2'-5' RNA ligase YP_001412668.1 PFAM: aldo/keto reductase; KEGG: oxidoreductase, aldo/keto reductase family YP_001412669.1 PFAM: lipolytic protein G-D-S-L family; KEGG: rru:Rru_A3650 lipolytic enzyme, G-D-S-L YP_001412670.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A3651 ABC transporter component YP_001412671.1 PFAM: protein of unknown function DUF214; KEGG: rpa:RPA0197 possible ABC transporter permeases YP_001412672.1 PFAM: protein of unknown function UPF0005; KEGG: mes:Meso_3353 protein of unknown function UPF0005 YP_001412673.1 KEGG: rle:RL4534 hypothetical protein YP_001412674.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psa:PST_2697 probable ATP-binding component of ABC transporter YP_001412675.1 PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: psa:PST_2695 ABC transporter, permease protein YP_001412676.1 KEGG: pmy:Pmen_3071 ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like protein YP_001412677.1 KEGG: mca:MCA1564 hypothetical protein YP_001412678.1 PFAM: protein of unknown function DUF1223; KEGG: mlo:mlr4337 hypothetical protein YP_001412679.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: sme:SMc03846 probable aconitate hydratase protein YP_001412680.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001412681.1 TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0205 heme exporter protein CcmA YP_001412682.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: pde:Pden_1412 heme exporter protein CcmB YP_001412683.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: bra:BRADO0390 heme ABC transporter (heme exporter protein C), permease protein (cytochrome c biogenesis) YP_001412684.1 PFAM: Heme exporter protein D (CcmD) YP_001412685.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mes:Meso_3362 periplasmic protein thiol--disulphide oxidoreductase DsbE YP_001412686.1 PFAM: regulatory protein MarR; KEGG: mmr:Mmar10_2856 transcriptional regulator, MarR family YP_001412687.1 PFAM: NUDIX hydrolase; KEGG: hne:HNE_3521 hydrolase, NUDIX family, NudH subfamily YP_001412688.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bbr:BB2073 putative sugar transport protein YP_001412689.1 TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: bov:BOV_1862 intracellular septation protein A YP_001412690.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: mlo:mlr4320 similar to cell division protein FtsY YP_001412691.1 KEGG: mlo:mlr4319 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001412692.1 PFAM: diaminopimelate epimerase; KEGG: rpe:RPE_0321 diaminopimelate epimerase YP_001412693.1 PFAM: LmbE family protein; KEGG: mbo:Mb0331c hypothetical protein YP_001412694.1 PFAM: CinA domain protein; KEGG: hypothetical protein YP_001412695.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: mes:Meso_3341 signal recognition particle protein YP_001412696.1 PFAM: ribosomal protein S16; KEGG: sal:Sala_2727 ribosomal protein S16 YP_001412697.1 Essential for efficient processing of 16S rRNA YP_001412698.1 TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; KEGG: mlo:mll4287 tRNA (guanine-N1)-methyltransferase YP_001412699.1 PFAM: ribosomal protein L19; KEGG: rpd:RPD_0506 ribosomal protein L19 YP_001412700.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; KEGG: bra:BRADO0374 3-isopropylmalate dehydratase large subunit 2 (isopropylmalate isomerase 2) (alpha-IPM isomerase 2) (IpmI 2) YP_001412701.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: jan:Jann_0123 3-isopropylmalate dehydratase, small subunit YP_001412702.1 TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sme:SMc04405 probable 3-isopropylmalate dehydrogenase protein YP_001412703.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: bov:BOV_A0831 aspartate-semialdehyde dehydrogenase YP_001412704.1 TIGRFAM: ammonium transporter; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Rh family protein/ammonium transporter; KEGG: pin:Ping_2650 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) YP_001412705.1 PFAM: HpcH/HpaI aldolase; KEGG: hne:HNE_3534 citrate lyase, beta subunit YP_001412707.1 PFAM: MaoC domain protein dehydratase; KEGG: rru:Rru_A1201 MaoC-like dehydratase YP_001412709.1 PFAM: thioesterase superfamily protein; KEGG: reh:H16_A1529 phenylacetic acid degradation protein PaaI YP_001412710.1 TIGRFAM: Succinate dehydrogenase cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: rpe:RPE_0510 succinate dehydrogenase, cytochrome b subunit YP_001412711.1 TIGRFAM: Succinate dehydrogenase hydrophobic membrane anchor; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: mlo:mll4265 succinate dehydrogenase cytochrome b small subunit YP_001412712.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001412713.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: mlo:mll4260 succinate dehydrogenase iron-sulfur protein subunit YP_001412716.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: syn:sll1783 hypothetical protein YP_001412717.1 KEGG: bja:bll2395 hypothetical protein YP_001412718.1 PFAM: regulatory protein ArsR; KEGG: mmr:Mmar10_1348 putative transcriptional regulator, ArsR family YP_001412719.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mmr:Mmar10_1349 glyoxalase/bleomycin resistance protein/dioxygenase YP_001412720.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mag:amb1828 protein-tyrosine-phosphatase YP_001412721.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: pde:Pden_0214 arsenical-resistance protein YP_001412722.1 KEGG: pde:Pden_4052 mucin-associated surface protein YP_001412723.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: methylmalonate-semialdehyde dehydrogenase, putative YP_001412724.1 PFAM: N-acetyltransferase; KEGG: mlo:mlr4870 arylamine N-acetyltransferase YP_001412725.1 PFAM: AFG1-family ATPase; KEGG: mmr:Mmar10_2833 AFG1-family ATPase YP_001412727.1 TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: sme:SMc02479 probable malate dehydrogenase protein YP_001412728.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001412729.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: mag:amb3958 succinyl-CoA synthetase YP_001412730.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_001412731.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001412732.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rpa:RPA0188 dihydrolipoamide acetyltransferase YP_001412733.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: bja:bll0449 dihydrolipoamide dehydrogenase YP_001412734.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mag:amb4250 integrase YP_001412735.1 PFAM: protein of unknown function DUF484; KEGG: mag:amb4252 hypothetical protein YP_001412736.1 TIGRFAM: putative transaldolase; PFAM: Transaldolase; KEGG: mes:Meso_3212 putative transaldolase YP_001412737.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001412739.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: rpd:RPD_0556 ATP synthase F1, delta subunit YP_001412740.1 TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: mes:Meso_3216 ATP synthase F1, alpha subunit YP_001412741.1 TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: rle:RL4408 putative ATP synthase gamma chain YP_001412742.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001412743.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: mmr:Mmar10_2800 ATP synthase F1, epsilon subunit YP_001412744.1 KEGG: gbe:GbCGDNIH1_2053 hypothetical protein YP_001412745.1 KEGG: bov:BOV_1771 hypothetical protein YP_001412746.1 KEGG: bra:BRADO6993 methyl-accepting chemotaxis protein (MCP) YP_001412747.1 PFAM: NUDIX hydrolase; KEGG: mlo:mll3998 probable (di)nucleoside polyphosphate hydrolase YP_001412748.1 PFAM: protein of unknown function DUF610 YibQ; KEGG: nha:Nham_0526 protein of unknown function DUF610, YibQ YP_001412749.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: rpd:RPD_0566 carboxyl-terminal protease YP_001412750.1 PFAM: peptidase M23B; KEGG: bja:blr0433 hypothetical protein YP_001412751.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001412752.1 PFAM: protein of unknown function DUF163; KEGG: sit:TM1040_2505 protein of unknown function DUF163 YP_001412753.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: mmr:Mmar10_2793 iojap-like protein YP_001412754.1 TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: sil:SPO0449 nicotinic acid mononucleotide adenyltransferase YP_001412755.1 TIGRFAM: gamma-glutamyl phosphate reductase; KEGG: rpb:RPB_0253 gamma-glutamyl phosphate reductase YP_001412756.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: bra:BRADO0431 gamma-glutamate kinase YP_001412757.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: mes:Meso_3458 small GTP-binding protein YP_001412758.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acetyltransferase, GNAT family YP_001412759.1 involved in the peptidyltransferase reaction during translation YP_001412760.1 PFAM: ribosomal protein L21; KEGG: mes:Meso_3461 ribosomal protein L21 YP_001412761.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: pae:PA3857 phosphatidylcholine synthase YP_001412762.1 KEGG: dps:DP1390 similar to excinuclease ATPase YP_001412763.1 KEGG: vpa:VP0897 hypothetical protein YP_001412764.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_4377 phospholipid/glycerol acyltransferase YP_001412765.1 KEGG: pen:PSEEN0362 acyl carrier protein YP_001412766.1 PFAM: phosphopantetheine-binding; KEGG: vvy:VV1079 acyl carrier protein YP_001412767.1 KEGG: pha:PSHAb0395 hypothetical protein YP_001412768.1 PFAM: AMP-dependent synthetase and ligase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: bvi:Bcep1808_5958 AMP-dependent synthetase and ligase YP_001412769.1 PFAM: phenylalanine/histidine ammonia-lyase; KEGG: pen:PSEEN0356 phenylalanine/histidine ammonia-lyase YP_001412770.1 PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_4384 thioesterase superfamily YP_001412771.1 KEGG: vvy:VV1072 hypothetical protein YP_001412772.1 KEGG: bam:Bamb_3607 putative lipoprotein transmembrane YP_001412773.1 PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; tryptophan halogenase; KEGG: reh:H16_B2509 dehydrogenase (flavoprotein) YP_001412774.1 KEGG: eca:ECA4495 putative lipoprotein YP_001412775.1 PFAM: Beta-ketoacyl synthase; KEGG: bvi:Bcep1808_5964 beta-ketoacyl synthase YP_001412776.1 PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rme:Rmet_4390 hypothetical protein YP_001412777.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase, putative; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: vfi:VF0859 3-ketoacyl-(acyl-carrier-protein) reductase YP_001412778.1 PFAM: Beta-ketoacyl synthase; KEGG: saz:Sama_3394 3-oxoacyl-(acyl-carrier-protein) synthase II YP_001412779.1 PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_1849 HlyD family secretion protein, putative YP_001412780.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: gsu:GSU2686 ABC transporter, ATP-binding protein YP_001412781.1 PFAM: ABC-2 type transporter; KEGG: abo:ABO_1847 ABC transporter, ATP-binding protein, permease, putative YP_001412782.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: mxa:MXAN_5850 NAD dependent epimerase/dehydratase family protein YP_001412783.1 PFAM: regulatory protein TetR; KEGG: gvi:gll0188 TetR family transcriptional regulatory protein YP_001412784.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: aeh:Mlg_1522 catalase/peroxidase HPI YP_001412785.1 KEGG: sil:SPO1996 hypothetical protein YP_001412786.1 KEGG: noc:Noc_2091 hypothetical protein YP_001412787.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: eci:UTI89_C1627 EntS/YbdA MFS transporter YP_001412790.1 PFAM: band 7 protein; KEGG: mlo:mll1932 probable stomatin YP_001412791.1 PFAM: protein of unknown function DUF107; KEGG: bja:bll4952 NfeD protein homolog YP_001412792.1 PFAM: protein of unknown function DUF1458; KEGG: hha:Hhal_0546 protein of unknown function DUF1458 YP_001412793.1 KEGG: gur:Gura_2403 hypothetical protein YP_001412794.1 KEGG: pfo:Pfl_2133 metal dependent phosphohydrolase, HD region YP_001412795.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_2812 oxidoreductase, short chain dehydrogenase/reductase family YP_001412796.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rle:RL4264 hypothetical protein YP_001412797.1 PFAM: protein of unknown function DUF188; KEGG: rru:Rru_A0086 protein of unknown function DUF188 YP_001412798.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: mes:Meso_0379 methionine-R-sulfoxide reductase YP_001412799.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: noc:Noc_1776 protein-methionine-S-oxide reductase YP_001412800.1 KEGG: swi:Swit_1797 integral membrane-like protein YP_001412801.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rpc:RPC_0008 cytochrome oxidase maturation protein, cbb3-type YP_001412802.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: mag:amb4368 cation transport ATPase YP_001412803.1 PFAM: FixH family protein; KEGG: mag:amb4367 predicted integral membrane protein linked to a cation pump YP_001412804.1 TIGRFAM: Cytochrome c oxidase cbb3 type accessory protein FixG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mmr:Mmar10_1153 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_001412805.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c class I; KEGG: rpa:RPA0016 cytochrome-c oxidase fixP chain YP_001412806.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: mmr:Mmar10_1151 Cbb3-type cytochrome oxidase component YP_001412807.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sme:SMa1216 FixO1 c-type cytochrome YP_001412808.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; KEGG: bja:blr2763 cytochrome-c oxidase YP_001412810.1 KEGG: azo:azo2253 probable exporter of RND superfamily YP_001412811.1 PFAM: acriflavin resistance protein; KEGG: AcrB/AcrD/AcrF family protein YP_001412812.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: efflux system protein, putative YP_001412813.1 PFAM: regulatory protein TetR; KEGG: aba:Acid345_4024 transcriptional regulator, TetR family YP_001412814.1 PFAM: regulatory protein TetR; KEGG: swi:Swit_2297 transcriptional regulator, TetR family YP_001412815.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bch:Bcen2424_5775 glyoxalase/bleomycin resistance protein/dioxygenase YP_001412816.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bxe:Bxe_C1055 putative fumarylacetoacetate (FAA) hydrolase YP_001412817.1 PFAM: monooxygenase FAD-binding; KEGG: nar:Saro_3413 monooxygenase, FAD-binding YP_001412818.1 KEGG: rpa:RPA1496 possible monooxygenase YP_001412819.1 KEGG: rpe:RPE_0691 hypothetical protein YP_001412820.1 PFAM: cytochrome P450; KEGG: cytochrome P450 family protein YP_001412821.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001412822.1 KEGG: acb:A1S_0088 hypothetical protein YP_001412823.1 PFAM: regulatory protein MerR; KEGG: nar:Saro_1479 transcriptional regulator, MerR family YP_001412824.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: spermidine/putrescine ABC transporter, ATP-binding protein; K02052 spermidine/putrescine transport system ATP-binding protein YP_001412825.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spermidine/putrescine ABC transporter, permease protein; K02053 spermidine/putrescine transport system permease protein YP_001412826.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spermidine/putrescine ABC transporter, permease protein; K02054 spermidine/putrescine transport system permease protein YP_001412827.1 PFAM: extracellular solute-binding protein family 1; KEGG: spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein; K02055 spermidine/putrescine transport system substrate-binding protein YP_001412828.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_001412829.1 PFAM: protein of unknown function DUF559; KEGG: nwi:Nwi_2534 protein of unknown function DUF559 YP_001412830.1 KEGG: gsu:GSU2438 prevent-host-death family protein YP_001412831.1 KEGG: vvy:VV2913 predicted membrane protein YP_001412832.1 PFAM: NUDIX hydrolase; KEGG: rpb:RPB_4339 NUDIX hydrolase YP_001412833.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: lpp:lpp0986 alanine dehydrogenase YP_001412834.1 PFAM: Sporulation domain protein; KEGG: gbe:GbCGDNIH1_1259 hypothetical protein YP_001412835.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mmr:Mmar10_1411 ribosomal protein L32 YP_001412836.1 KEGG: ajs:Ajs_0454 hypothetical protein YP_001412837.1 KEGG: mmr:Mmar10_2387 hypothetical protein YP_001412838.1 PFAM: aminotransferase class IV; KEGG: rxy:Rxyl_0760 aminotransferase, class IV YP_001412839.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: gbe:GbCGDNIH1_0821 anthranilate synthase component II YP_001412840.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: rxy:Rxyl_0761 para-aminobenzoate synthase, component I YP_001412841.1 PFAM: alpha/beta hydrolase fold; KEGG: sus:Acid_2544 alpha/beta hydrolase fold YP_001412842.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_A3281 short chain dehydrogenase YP_001412843.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02669 possible enoyl-CoA hydratase YP_001412844.1 KEGG: hypothetical protein YP_001412845.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: mlo:mll6984 gamma-glutamyltranspeptidase YP_001412847.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; KEGG: bja:blr0951 hypothetical protein YP_001412848.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: hypothetical protein YP_001412849.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: bra:BRADO0562 acetyl-CoA acetyltransferase with thiolase domain (acetoacetyl-CoA thiolase) YP_001412850.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rsh:Rsph17029_2402 acetoacetyl-CoA reductase YP_001412851.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: rru:Rru_A2514 twin-arginine translocation pathway signal YP_001412852.1 PFAM: polysaccharide deacetylase; KEGG: rpd:RPD_2943 polysaccharide deacetylase YP_001412853.1 PFAM: protein of unknown function DUF985; KEGG: mag:amb0788 hypothetical protein YP_001412854.1 PFAM: beta-lactamase domain protein; KEGG: sme:SMc00708 putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein YP_001412855.1 PFAM: Methyltransferase type 11; KEGG: mag:amb4193 SAM-dependent methyltransferase YP_001412856.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO6460 putative methionine biosynthesis protein (MetW) YP_001412857.1 TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr3538 homoserine O-acetyltransferase YP_001412858.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; KEGG: rru:Rru_A3265 chorismate mutase YP_001412859.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: bra:BRADO6463 histidinol-phosphate aminotransferase YP_001412860.1 PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mlo:mll3535 cyclohexadienyl dehydrogenase / prephenate dehydrogenase YP_001412861.1 KEGG: mmr:Mmar10_2378 hypothetical protein YP_001412862.1 PFAM: ChaC family protein; KEGG: bra:BRADO6466 putative cation transport protein ChaC-related YP_001412863.1 PFAM: protein of unknown function DUF1006; KEGG: rsq:Rsph17025_0040 protein of unknown function DUF1006 YP_001412864.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rpe:RPE_2873 glyoxalase/bleomycin resistance protein/dioxygenase YP_001412866.1 PFAM: diacylglycerol kinase catalytic region; KEGG: bra:BRADO2824 conserved hypothetical protein; putative diacylglycerol kinase related protein YP_001412867.1 TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; KEGG: mag:amb4446 ribonucleotide reductase, alpha subunit YP_001412868.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: mag:amb4445 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001412869.1 PFAM: protein of unknown function DUF218; KEGG: rle:RL4332 putative transmembrane protein YP_001412870.1 PFAM: protein of unknown function DUF214; KEGG: rpb:RPB_0835 protein of unknown function DUF214 YP_001412871.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bov:BOV_1923 cell division ATP-binding protein FtsE YP_001412872.1 TIGRFAM: MJ0042 family finger-like protein; KEGG: bbt:BBta_1175 hypothetical protein YP_001412873.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sme:SMc00719 hypoxanthine-guanine phosphoribosyltransferase YP_001412874.1 PFAM: response regulator receiver; KEGG: rpa:RPA4738 response regulator receiver (CheY-like protein) YP_001412875.1 KEGG: mes:Meso_3097 hypothetical protein YP_001412876.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mlo:mlr3508 diaminopimelate decarboxylase YP_001412878.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: nha:Nham_3477 argininosuccinate lyase YP_001412879.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpc:RPC_4876 thioredoxin-like YP_001412880.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: nfa:nfa22790 hypothetical protein YP_001412881.1 PFAM: protein of unknown function DUF1457 YP_001412882.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: bja:blr1379 3-hydroxybutyryl-CoA dehydrogenase YP_001412883.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: bja:blr1378 electron transfer flavoprotein large subunit YP_001412884.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: bbt:BBta_1140 electron transfer flavoprotein beta-subunit YP_001412885.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: atc:AGR_L_2467 hypothetical protein YP_001412886.1 PFAM: cytochrome B561; KEGG: lpc:LPC_1005 cytochrome b-561 transmembrane protein YP_001412887.1 catalyzes the cleavage of carbon-halogen bonds in aliphatic compounds forming a primary alcohol and a halide YP_001412888.1 PFAM: Hypoxia induced protein conserved region; KEGG: rpc:RPC_4882 hypothetical protein YP_001412889.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rsq:Rsph17025_2567 acyl-CoA dehydrogenase domain protein YP_001412890.1 PFAM: cation transporter; KEGG: pmy:Pmen_1826 potassium uptake protein, TrkH family YP_001412891.1 KEGG: bmb:BruAb1_1468 hypothetical protein YP_001412892.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: xfa:XF1696 hypothetical protein YP_001412893.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: xft:PD1184 toxin-like protein YP_001412894.1 PFAM: beta-lactamase domain protein; KEGG: rpa:RPA0365 beta-lactamase-like YP_001412895.1 PFAM: regulatory protein ArsR; KEGG: rme:Rmet_2370 transcriptional regulator, ArsR family YP_001412896.1 PFAM: Rhodanese domain protein; KEGG: rme:Rmet_2371 rhodanese-like protein YP_001412897.1 TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rsh:Rsph17029_2620 crotonyl-CoA reductase YP_001412898.1 KEGG: mmr:Mmar10_1630 hypothetical protein YP_001412899.1 KEGG: hne:HNE_1286 cyclododecanone monooxygenase YP_001412900.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpd:RPD_1248 acyl-CoA dehydrogenase-like YP_001412901.1 TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; KEGG: rru:Rru_A3062 methylmalonyl-CoA mutase-like YP_001412905.1 PFAM: Auxin Efflux Carrier; KEGG: rsh:Rsph17029_2331 auxin efflux carrier YP_001412906.1 PFAM: acyltransferase 3; KEGG: nha:Nham_0454 acyltransferase 3 YP_001412907.1 PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sme:SMc00735 glutamyl-tRNA synthetase YP_001412908.1 PFAM: phospholipase/Carboxylesterase; KEGG: acr:Acry_1326 phospholipase/carboxylesterase YP_001412909.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mlo:mll3477 hypothetical protein YP_001412910.1 PFAM: Ubiquinone biosynthesis protein COQ7; KEGG: mmr:Mmar10_2348 ubiquinone biosynthesis protein COQ7 YP_001412911.1 PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB YP_001412912.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: bpe:BP2156 hypothetical protein YP_001412913.1 PFAM: glutamine synthetase catalytic region; KEGG: psa:PST_1993 glutamate--ammonia ligase YP_001412914.1 PFAM: Creatininase; KEGG: mva:Mvan_1602 creatininase YP_001412915.1 PFAM: regulatory protein TetR; KEGG: mfa:Mfla_2564 transcriptional regulator, TetR family YP_001412916.1 PFAM: regulatory protein TetR; KEGG: transcriptional regulator, TetR family YP_001412917.1 KEGG: hne:HNE_2082 hypothetical protein YP_001412918.1 PFAM: arsenate reductase and related; KEGG: rpe:RPE_3058 hypothetical protein YP_001412919.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1441 acetyltransferase, GNAT family YP_001412920.1 PFAM: SirA family protein; KEGG: rsh:Rsph17029_0807 SirA family protein YP_001412921.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization YP_001412922.1 PFAM: luciferase family protein; KEGG: mes:Meso_3721 luciferase-like YP_001412923.1 PFAM: regulatory protein TetR; KEGG: bpd:BURPS668_A2057 transcriptional regulator, TetR family YP_001412924.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_1957 putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX YP_001412925.1 PFAM: Hyaluronidase; KEGG: maq:Maqu_3474 hyaluronidase YP_001412926.1 KEGG: hne:HNE_3384 hypothetical protein YP_001412927.1 PFAM: Glutathione S-transferase domain; KEGG: hne:HNE_2391 glutathione S-transferase YP_001412928.1 PFAM: beta-lactamase domain protein; KEGG: hne:HNE_3461 metallo-beta-lactamase family protein YP_001412929.1 KEGG: sru:SRU_1321 hypothetical protein YP_001412932.1 KEGG: sru:SRU_0279 hypothetical protein YP_001412933.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr2256 hypothetical oxidoreductase YP_001412934.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: vei:Veis_0111 carboxymuconolactone decarboxylase YP_001412935.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: vei:Veis_0111 carboxymuconolactone decarboxylase YP_001412936.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hne:HNE_3427 feruloyl-CoA synthetase YP_001412937.1 PFAM: AMP-dependent synthetase and ligase; KEGG: feruloyl-CoA synthase YP_001412938.1 PFAM: protein of unknown function DUF924; KEGG: xcb:XC_0794 hypothetical protein YP_001412939.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7157 putative glucose 1-dehydrogenase YP_001412940.1 KEGG: mmr:Mmar10_2307 hypothetical protein YP_001412941.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: reu:Reut_B5462 esterase/lipase/thioesterase YP_001412942.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aeh:Mlg_2555 HAD-superfamily subfamily IIA hydrolase like protein YP_001412943.1 PFAM: AMP-dependent synthetase and ligase; KEGG: rpa:RPA4829 putative crotonobetaine/carnitine-CoA ligase YP_001412944.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mag:amb3695 sulfate permease and related transporters YP_001412945.1 PFAM: FAD linked oxidase domain protein; KEGG: lic:LIC11674 alkylglycerone-phosphate synthase YP_001412946.1 PFAM: diacylglycerol kinase catalytic region; KEGG: mxa:MXAN_4683 conserved hypothetical protein TIGR00147 YP_001412947.1 PFAM: FAD dependent oxidoreductase; KEGG: lic:LIC11675 glycerol-3-phosphate dehydrogenase YP_001412948.1 PFAM: regulatory protein LuxR; KEGG: swi:Swit_1997 regulatory protein, LuxR YP_001412949.1 PFAM: DSBA oxidoreductase; KEGG: rpa:RPA1011 DsbA oxidoreductase YP_001412950.1 PFAM: alpha/beta hydrolase fold; KEGG: eli:ELI_11645 probable hydrolase YP_001412951.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_2222 alpha/beta hydrolase fold YP_001412952.1 PFAM: ThiJ/PfpI domain protein; KEGG: reh:H16_B2498 intracellular protease/amidase YP_001412953.1 PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_2222 alpha/beta hydrolase fold YP_001412954.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_1599 short-chain dehydrogenase/reductase SDR YP_001412955.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bja:blr1158 acyl-CoA dehydrogenase YP_001412956.1 KEGG: nmu:Nmul_A0143 ATP-dependent endonuclease of the OLD family-like YP_001412957.1 PFAM: protein of unknown function DUF1457; KEGG: sme:SMc01000 hypothetical protein YP_001412959.1 PFAM: thioesterase superfamily protein; KEGG: eli:ELI_05475 hypothetical protein YP_001412960.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: sfr:Sfri_0734 OmpA domain protein transmembrane region-containing protein YP_001412961.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpb:RPB_1685 enoyl-CoA hydratase/isomerase YP_001412963.1 KEGG: mmr:Mmar10_0815 hypothetical protein YP_001412964.1 PFAM: glycosyl transferase family 9; KEGG: pub:SAR11_1206 heptosyltransferase family protein YP_001412965.1 PFAM: peptidase S24 S26A and S26B; SMART: helix-turn-helix domain protein; KEGG: ppd:Ppro_0272 putative phage repressor YP_001412966.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mag:amb3889 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_001412967.1 PFAM: nuclease (SNase domain protein); KEGG: mmr:Mmar10_2298 nuclease (SNase domain protein) YP_001412968.1 PFAM: peptidase M48 Ste24p; KEGG: mag:amb0300 putative Zn-dependent protease YP_001412969.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: hne:HNE_3450 putative alternative sigma factor RpoH YP_001412970.1 PFAM: transcription factor CarD; KEGG: rpd:RPD_0278 transcription factor CarD YP_001412971.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mlo:mlr3855 ferredoxin II YP_001412972.1 PFAM: protein of unknown function DUF1332; KEGG: rru:Rru_A0076 protein of unknown function DUF1332 YP_001412973.1 PFAM: RNA-binding S4 domain protein; KEGG: rde:RD1_1823 heat shock protein, putative YP_001412974.1 PFAM: helicase domain protein; KEGG: rpa:RPA0491 possible MgpS, ATP-dependent helicase YP_001412975.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: hne:HNE_0809 acyl-CoA dehydrogenase family protein YP_001412976.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rru:Rru_A3213 PAS/PAC sensor signal transduction histidine kinase YP_001412978.1 MDM; functions in conversion of succinate to propionate YP_001412980.1 KEGG: rpe:RPE_0128 hypothetical protein YP_001412981.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins YP_001412982.1 PFAM: ribosomal protein L28; KEGG: ret:RHE_CH03816 50S ribosomal protein L28 YP_001412983.1 KEGG: bov:BOV_1938 hypothetical protein YP_001412984.1 KEGG: rpc:RPC_0541 hypothetical protein YP_001412985.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mlo:mll4906 multidrug efflux protein (NorM) YP_001412986.1 PFAM: major facilitator superfamily MFS_1; KEGG: rle:RL2426 putative transmembrane protein YP_001412987.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: aha:AHA_3605 hypothetical protein YP_001412988.1 KEGG: bbt:BBta_7564 aerobic cobaltochelatase CobT subunit (cobalamin biosynthesis); TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A YP_001412989.1 TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities AAA_5; KEGG: mes:Meso_3069 cobalt chelatase, pCobS small subunit YP_001412990.1 PFAM: heat shock protein DnaJ domain protein; KEGG: bov:BOV_1947 DnaJ domain protein YP_001412991.1 PFAM: BolA family protein; KEGG: rpc:RPC_0535 BolA-like protein YP_001412992.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: bov:BOV_1949 CBS domain protein YP_001412993.1 PFAM: 3-dehydroquinate synthase; KEGG: sil:SPO1635 3-dehydroquinate synthase YP_001412994.1 PFAM: shikimate kinase; KEGG: rpe:RPE_0143 shikimate kinase YP_001412995.1 KEGG: mag:amb3928 antifreeze glycopeptide polyprotein precursor YP_001412996.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sme:SMc00691 probable integrase/recombinase DNA recombination protein YP_001412997.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-70 ECF type; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bte:BTH_I0997 RNA polymerase sigma-70 factor, ECF family YP_001412998.1 KEGG: sus:Acid_3604 hypothetical protein YP_001412999.1 KEGG: hypothetical protein YP_001413000.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: rpb:RPB_0532 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_001413001.1 PFAM: protein of unknown function DUF1457 YP_001413002.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: mhu:Mhun_0633 TrkA-C YP_001413003.1 PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein; KEGG: bcl:ABC1387 epoxide hydrolase 1 YP_001413004.1 PFAM: Epoxide hydrolase domain protein; KEGG: hne:HNE_2052 epoxide hydrolase YP_001413005.1 PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3455 major facilitator superfamily MFS_1 YP_001413006.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: bra:BRADO0590 preprotein translocase SecA subunit YP_001413007.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rpa:RPA0511 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001413008.1 TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; KEGG: rru:Rru_A0394 amino-acid N-acetyltransferase YP_001413009.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: rle:RL4294 putative NTP pyrophosphohydrolase YP_001413010.1 PFAM: Flp/Fap pilin component YP_001413011.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hypothetical protein YP_001413012.1 PFAM: phosphoribosyltransferase; KEGG: bbt:BBta_7594 putative competence protein F (ComF) YP_001413013.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: jan:Jann_0296 glutaredoxin, GrxC YP_001413014.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hne:HNE_0584 hydrolase, carbon-nitrogen family YP_001413015.1 PFAM: protein of unknown function DUF1178; KEGG: bra:BRADO0580 hypothetical protein YP_001413016.1 TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: cvi:CV1040 probable FAD-dependent oxidoreductase YP_001413017.1 KEGG: pen:PSEEN3317 cytochrome c YP_001413018.1 TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mes:Meso_3002 ubiquinone biosynthesis O-methyltransferase YP_001413019.1 TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: mlo:mll3437 aspartokinase, alpha and beta subunits YP_001413020.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: rpd:RPD_0098 phosphoenolpyruvate-protein phosphotransferase YP_001413021.1 KEGG: mag:amb1615 hypothetical protein YP_001413022.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001413023.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sal:Sala_2714 peptide chain release factor 1 YP_001413024.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: mag:amb1619 methylase of polypeptide chain release factor YP_001413025.1 KEGG: bja:blr0220 hypothetical protein YP_001413026.1 PFAM: MOSC domain containing protein; KEGG: rpb:RPB_4248 MOSC YP_001413027.1 PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rpd:RPD_4095 ATPase AAA-2 YP_001413028.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aha:AHA_1994 glucose 1-dehydrogenase YP_001413030.1 PFAM: peptidase M23B; KEGG: rru:Rru_A0770 peptidase M23B YP_001413031.1 PFAM: Resolvase domain; Recombinase; KEGG: pde:Pden_0106 recombinase YP_001413033.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001413034.1 PFAM: protein of unknown function DUF35; KEGG: reh:H16_A1296 hypothetical protein containing DUF35 domain YP_001413035.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_001413036.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR YP_001413037.1 PFAM: ring hydroxylating dioxygenase alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: nar:Saro_3864 Rieske (2Fe-2S) domain protein YP_001413038.1 PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: nar:Saro_3863 aromatic-ring-hydroxylating dioxygenase, beta subunit YP_001413039.1 PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: nar:Saro_3862 pyridoxal phosphate biosynthetic protein PdxA YP_001413040.1 KEGG: bbr:BB0659 hypothetical protein YP_001413041.1 PFAM: cytochrome P450; KEGG: cytochrome P450 family protein YP_001413042.1 AliA; in Rhodopseudomonas palustris, this enzyme was found to act on 3-chlorobenzoate and allows the organism to grow on this substrate YP_001413043.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_5297 short-chain dehydrogenase/reductase SDR YP_001413044.1 PFAM: regulatory protein TetR; KEGG: pol:Bpro_5293 transcriptional regulator, TetR family YP_001413045.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eba:ebA1956 putative 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase YP_001413046.1 TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_B3916 naphthoate synthase YP_001413047.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: eba:ebA1959 cyclohexanecarboxyl-CoA dehydrogenase YP_001413048.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_5272 enoyl-CoA hydratase/isomerase YP_001413049.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: bam:Bamb_6236 Rieske (2Fe-2S) domain protein YP_001413050.1 PFAM: luciferase family protein; KEGG: bxe:Bxe_C0953 putative luciferase-like monooxygenase YP_001413051.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hne:HNE_0937 enoyl-CoA hydratase/isomerase family protein YP_001413052.1 PFAM: alpha/beta hydrolase fold; KEGG: mav:MAV_1846 hydrolase, alpha/beta fold family protein YP_001413053.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: eli:ELI_14950 regulatory protein GntR, HTH YP_001413054.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: eli:ELI_14955 oxidoreductase, 2-nitropropane dioxygenase family protein YP_001413055.1 PFAM: thioesterase superfamily protein; KEGG: mjl:Mjls_3233 uncharacterized domain 1 YP_001413056.1 KEGG: rha:RHA1_ro06698 cyclohexanone monooxygenase YP_001413057.1 PFAM: cytochrome P450; KEGG: eli:ELI_14945 cytochrome P450 family protein YP_001413058.1 PFAM: ferredoxin; KEGG: eli:ELI_14940 ferredoxin, 2Fe-2S YP_001413059.1 PFAM: regulatory protein TetR; KEGG: bch:Bcen2424_0178 transcriptional regulator, TetR family YP_001413060.1 PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: gtn:GTNG_3160 putative aromatic compound hydroxylase YP_001413061.1 PFAM: aldehyde dehydrogenase; KEGG: ace:Acel_1100 betaine-aldehyde dehydrogenase YP_001413062.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_3865 glyoxalase/bleomycin resistance protein/dioxygenase YP_001413063.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: nar:Saro_2598 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_001413064.1 PFAM: HpcH/HpaI aldolase; KEGG: sen:SACE_0699 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase YP_001413065.1 PFAM: Hydratase/decarboxylase; KEGG: aau:AAur_3913 2-oxo-hepta-3-ene-1,7-dioic acid hydratase YP_001413066.1 KEGG: rha:RHA1_ro10221 hypothetical protein YP_001413067.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mtf:TBFG_13570 hypothetical dehydrogenase YP_001413068.1 PFAM: luciferase family protein; KEGG: swi:Swit_4156 alkanal monooxygenase (FMN-linked) YP_001413069.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro04688 enoyl-CoA hydratase YP_001413070.1 PFAM: amidohydrolase 2; KEGG: swi:Swit_1767 amidohydrolase 2 YP_001413071.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: swi:Swit_2091 amidohydrolase 3 YP_001413072.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: acr:Acry_0629 alpha/beta hydrolase fold-3 domain protein YP_001413073.1 PFAM: regulatory protein IclR; KEGG: bpe:BP0674 probable transcriptional regulator YP_001413074.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: eba:ebA5836 2,4-dienoyl-CoA reductase YP_001413075.1 PFAM: MaoC domain protein dehydratase; KEGG: ptr:462019 hydroxysteroid (17-beta) dehydrogenase 4 YP_001413076.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: mgi:Mflv_4627 carboxymuconolactone decarboxylase YP_001413077.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bbr:BB0552 putative zinc-binding dehydrogenase YP_001413078.1 KEGG: eli:ELI_14965 putative nonspecific lipid-transfer protein YP_001413079.1 PFAM: protein of unknown function DUF35; KEGG: eli:ELI_14970 hypothetical protein YP_001413080.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: eli:ELI_14975 putative acyl-CoA dehydrogenase family protein YP_001413081.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: eli:ELI_14980 putative acyl-CoA dehydrogenase YP_001413082.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sal:Sala_1104 acyl-CoA dehydrogenase-like protein YP_001413083.1 KEGG: bvi:Bcep1808_4948 biopolymer transport protein ExbD/TolR YP_001413084.1 KEGG: mlo:mlr6104 hypothetical protein YP_001413085.1 KEGG: bbt:BBta_7428 hypothetical protein YP_001413086.1 PFAM: helix-turn-helix domain protein; KEGG: rpe:RPE_4037 transcriptional regulator, XRE family YP_001413087.1 PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_3550 transcriptional regulator, XRE family YP_001413088.1 PFAM: domain of unknown function DUF1738; KEGG: mlo:mlr6154 antirestriction protein YP_001413090.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: mlo:mlr6157 similar to partitioning protein YP_001413091.1 PFAM: protein of unknown function DUF736; KEGG: mlo:mlr6185 hypothetical protein YP_001413092.1 KEGG: mlo:msr6186 hypothetical protein YP_001413093.1 KEGG: mlo:mlr6188 plasmid transfer protein TraF YP_001413094.1 PFAM: Lytic transglycosylase catalytic; KEGG: mlo:mlr6189 similar to transglycosylase YP_001413095.1 KEGG: mlo:mlr6191 hypothetical protein YP_001413096.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: rpe:RPE_2473 exodeoxyribonuclease I YP_001413097.1 PFAM: protein of unknown function DUF955; KEGG: rpe:RPE_2472 protein of unknown function DUF955 YP_001413098.1 PFAM: helix-turn-helix domain protein; KEGG: rpe:RPE_2471 transcriptional regulator, XRE family YP_001413099.1 KEGG: rpe:RPE_2470 hypothetical protein YP_001413100.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rpe:RPE_2469 AAA ATPase, central domain protein YP_001413101.1 KEGG: rpe:RPE_2468 hypothetical protein YP_001413102.1 KEGG: rpe:RPE_2467 hypothetical protein YP_001413103.1 KEGG: rpe:RPE_2466 hypothetical protein YP_001413104.1 KEGG: ajs:Ajs_1271 hypothetical protein YP_001413105.1 KEGG: bbt:BBta_7549 hypothetical protein YP_001413106.1 KEGG: bbt:BBta_7418 putative membrane protein of unknown function YP_001413107.1 type IV secretion VirD4 coupling protein family YP_001413108.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding YP_001413109.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: mlo:mlr6397 conjugal transfer protein traB YP_001413110.1 PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_3195 conjugal transfer protein TrbC YP_001413111.1 KEGG: aav:Aave_0728 putative conjugal transfer TrbD transmembrane protein YP_001413112.1 type IV secretion system VirB4 family YP_001413113.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mlo:mlr6401 conjugal transfer protein TrbJ YP_001413114.1 type IV secretion VirB6 family YP_001413115.1 PFAM: Conjugal transfer protein; KEGG: mlo:mlr6403 conjugal transfer protein trbF YP_001413116.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mlo:mlr6404 conjugal transfer protein trbG YP_001413117.1 PFAM: Ubiquitin interacting domain protein; conjugation TrbI family protein; KEGG: mlo:mlr6405 conjugal transfer protein trbI YP_001413118.1 KEGG: mlo:msr6406 hypothetical protein YP_001413119.1 PFAM: protein of unknown function DUF736; KEGG: hypothetical protein YP_001413120.1 KEGG: nha:Nham_4291 hypothetical protein YP_001413121.1 PFAM: Domain of unknown function DUF1814; KEGG: nha:Nham_4292 hypothetical protein YP_001413123.1 KEGG: pfl:PFL_2817 hypothetical protein YP_001413124.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; Hpt domain protein; KEGG: mag:amb3438 sensor protein GacS YP_001413125.1 PFAM: regulatory protein MarR; KEGG: sal:Sala_2099 hypothetical protein YP_001413126.1 PFAM: class II aldolase/adducin family protein; KEGG: xcb:XC_2369 putative L-fuculose-phosphate aldolase YP_001413127.1 PFAM: Acireductone dioxygenase ARD; KEGG: xcv:XCV1885 acireductone dioxygenase family protein YP_001413128.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mca:MCA0797 hydrolase, haloacid dehalogenase-like family YP_001413129.1 KEGG: acr:Acry_0749 hypothetical protein YP_001413130.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: rru:Rru_A0027 monofunctional biosynthetic peptidoglycan transglycosylase YP_001413132.1 PFAM: FAD dependent oxidoreductase; GMC oxidoreductase; KEGG: swi:Swit_2390 GMC oxidoreductase YP_001413133.1 PFAM: aldehyde dehydrogenase; KEGG: hne:HNE_3109 aldehyde dehydrogenase family protein YP_001413134.1 KEGG: rle:RL1940 hypothetical protein YP_001413136.1 PFAM: major facilitator superfamily MFS_1; KEGG: vei:Veis_4967 major facilitator superfamily MFS_1 YP_001413137.1 PFAM: protein of unknown function DUF519; KEGG: mag:amb0584 protein involved in catabolism of external DNA YP_001413138.1 PFAM: protein of unknown function DUF344; KEGG: bvi:Bcep1808_7286 protein of unknown function DUF344 YP_001413139.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_3051 TonB-dependent receptor YP_001413140.1 TIGRFAM: anti-sigma factor, putative, ChrR family; KEGG: rpd:RPD_0339 anti-sigma factor ChrR , putative YP_001413141.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_001413142.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rle:pRL120576 putative amine oxidase YP_001413143.1 PFAM: protein of unknown function DUF1365; KEGG: rru:Rru_A0724 protein of unknown function DUF1365 YP_001413144.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: mag:amb1214 predicted signal transduction protein YP_001413145.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: eli:ELI_14975 putative acyl-CoA dehydrogenase family protein YP_001413146.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: eli:ELI_14980 putative acyl-CoA dehydrogenase YP_001413147.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: swi:Swit_5118 addiction module antitoxin, RelB/DinJ family YP_001413148.1 PFAM: MtN3 and saliva related transmembrane protein; KEGG: sde:Sde_3602 glutathione synthetase YP_001413149.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:blr2812 hypothetical zinc-type alcohol dehydrogenase-like protein YP_001413150.1 PFAM: Glutathione S-transferase domain; KEGG: mgm:Mmc1_3681 glutathione S-transferase, N-terminal domain YP_001413151.1 KEGG: noc:Noc_2584 Rickettsia 17 kDa surface antigen YP_001413154.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: mxa:MXAN_0537 putative cardiolipin synthase YP_001413155.1 PFAM: TonB-dependent receptor; KEGG: mmr:Mmar10_1609 TonB-dependent receptor YP_001413156.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: bms:BR0471 cytochrome c oxidase assembly protein Ctag YP_001413157.1 PFAM: Rhomboid family protein; KEGG: rru:Rru_A3565 rhomboid-like protein YP_001413158.1 PFAM: Aldose 1-epimerase; KEGG: bur:Bcep18194_A3707 aldose 1-epimerase YP_001413159.1 KEGG: rle:pRL90288 putative transport protein YP_001413160.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpd:RPD_2184 binding-protein-dependent transport systems inner membrane component YP_001413161.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbe:GbCGDNIH1_1748 ABC transporter ATP-binding protein YP_001413162.1 KEGG: rpe:RPE_1217 hypothetical protein YP_001413163.1 KEGG: rle:pRL90292 hypothetical protein YP_001413164.1 TIGRFAM: urea amidolyase related protein; Urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: gbe:GbCGDNIH1_1745 UreA carboxylase YP_001413165.1 TIGRFAM: Allophanate hydrolase; PFAM: Amidase; KEGG: nmu:Nmul_A0944 amidase YP_001413166.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pmf:P9303_00971 possible phosphatase YP_001413167.1 TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; KEGG: mag:amb0778 ADP-heptose synthase YP_001413168.1 PFAM: Abortive infection protein; KEGG: btl:BALH_4146 CAAX amino terminal protease family YP_001413169.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_001413170.1 PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: swi:Swit_1382 hypothetical protein YP_001413171.1 KEGG: swi:Swit_1381 hypothetical protein YP_001413172.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: mes:Meso_0318 putative ribonuclease BN YP_001413173.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KEGG: rpe:RPE_0696 KpsF/GutQ family protein YP_001413174.1 PFAM: metallophosphoesterase; KEGG: rru:Rru_A3111 metallophosphoesterase YP_001413175.1 PFAM: polysaccharide export protein; KEGG: hne:HNE_2650 polysaccharide biosynthesis/export protein YP_001413177.1 KEGG: hypothetical protein YP_001413178.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: hypothetical protein YP_001413179.1 KEGG: rru:Rru_A1491 hypothetical protein YP_001413180.1 PFAM: O-antigen polymerase; KEGG: rru:Rru_A1492 hypothetical protein YP_001413181.1 PFAM: acyltransferase 3; KEGG: swi:Swit_4615 acyltransferase 3 YP_001413182.1 PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: bfr:BF2001 putative flippase YP_001413184.1 PFAM: sulfotransferase; KEGG: aeh:Mlg_2328 sulfotransferase YP_001413185.1 PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0689 glycosyl transferase, group 1 YP_001413186.1 PFAM: glycosyl transferase group 1; KEGG: aau:AAur_4121 putative glycosyl transferase, group 1 family protein YP_001413187.1 PFAM: polysaccharide pyruvyl transferase; KEGG: bld:BLi03680 YvfF YP_001413188.1 PFAM: glycosyl transferase group 1; KEGG: sru:SRU_0281 glycosyl transferase, group 1 family protein YP_001413189.1 PFAM: glycosyl transferase family 2; KEGG: ava:Ava_0844 glycosyl transferase, family 2 YP_001413190.1 PFAM: O-antigen polymerase; KEGG: vpa:VPA1409 hypothetical protein YP_001413191.1 PFAM: glycosyl transferase group 1; KEGG: rba:RB8313 putative glycosyl transferase (WbnE) YP_001413192.1 PFAM: Methyltransferase type 11; Methyltransferase type 12 YP_001413193.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: rpe:RPE_4206 UDP-glucose 6-dehydrogenase YP_001413194.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ade:Adeh_0221 NAD-dependent epimerase/dehydratase YP_001413195.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rle:pRL90133 putative GDP-mannose 4,6-dehydratase YP_001413196.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mba:Mbar_A0034 GDP-mannose 4,6 dehydratase YP_001413197.1 PFAM: sugar transferase; KEGG: mes:Meso_1154 sugar transferase YP_001413198.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: ret:RHE_CH03561 UTP-glucose-1-phosphate uridylyltransferase protein YP_001413199.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_001413200.1 KEGG: gbe:GbCGDNIH1_0402 hypothetical protein YP_001413201.1 PFAM: beta-lactamase domain protein; KEGG: mlo:mll0231 hypothetical protein YP_001413202.1 KEGG: pmy:Pmen_3653 metal-dependent hydrolase-like protein YP_001413204.1 PFAM: sugar transferase; KEGG: eca:ECA1420 undecaprenyl-phosphate galactosephosphotransferase YP_001413205.1 TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: ttj:TTHB114 galactose-1-phosphate uridylyltransferase YP_001413206.1 TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: ttj:TTHA0595 galactokinase YP_001413207.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; MHYT domain protein; KEGG: mag:amb2546 signal transduction histidine kinase YP_001413208.1 PFAM: protein of unknown function DUF368; KEGG: pin:Ping_0693 inner membrane protein DUF368 YP_001413209.1 PFAM: glycoside hydrolase family 4; KEGG: rrs:RoseRS_2891 glycoside hydrolase, family 4 YP_001413210.1 PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: eli:ELI_03710 beta-galactosidase YP_001413211.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ppu:PP_4798 membrane-bound lytic murein transglycosylase, putative YP_001413212.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpd:RPD_2240 protein of unknown function DUF404 YP_001413213.1 PFAM: protein of unknown function DUF403; KEGG: rpe:RPE_2296 protein of unknown function DUF403 YP_001413214.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bbt:BBta_5275 hypothetical protein YP_001413215.1 PFAM: 20S proteasome A and B subunits; KEGG: bbt:BBta_5276 hypothetical protein YP_001413218.1 PFAM: acyltransferase 3; KEGG: swi:Swit_4615 acyltransferase 3 YP_001413219.1 PFAM: acyltransferase 3; KEGG: cch:Cag_1265 putative membrane-located cell surface saccharide saccharide acetylase protein YP_001413220.1 PFAM: Glutathione S-transferase domain; KEGG: nar:Saro_2405 glutathione S-transferase-like YP_001413221.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fatty oxidation complex, alpha subunit YP_001413222.1 PFAM: regulatory protein TetR; KEGG: sma:SAV6701 TetR-family transcriptional regulator YP_001413223.1 PFAM: cytochrome P450; KEGG: eli:ELI_14945 cytochrome P450 family protein YP_001413224.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: swi:Swit_4150 Rieske (2Fe-2S) domain protein YP_001413225.1 SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3065 transcriptional regulator, XRE family YP_001413226.1 KEGG: pde:Pden_0484 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system YP_001413227.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pat:Patl_0102 ATPase associated with various cellular activities, AAA_5 YP_001413228.1 PFAM: VWA containing CoxE family protein; KEGG: rpa:RPA0742 hypothetical protein YP_001413229.1 PFAM: protein of unknown function DUF459; KEGG: swi:Swit_3458 lipolytic enzyme, G-D-S-L family YP_001413230.1 KEGG: mxa:MXAN_6502 hypothetical protein YP_001413231.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: swi:Swit_3460 membrane bound O-acyl transferase, MBOAT family protein YP_001413233.1 PFAM: branched-chain amino acid transport; KEGG: reh:H16_A0508 predicted membrane protein YP_001413234.1 PFAM: AzlC family protein; KEGG: hma:rrnAC1920 branched-chain amino acid transport protein AzlC YP_001413235.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001413236.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT) YP_001413238.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cyb:CYB_0540 putative low specificity L-threonine aldolase YP_001413239.1 PFAM: Hpt domain protein; KEGG: rru:Rru_A2652 hypothetical protein YP_001413240.1 KEGG: mag:amb1110 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_001413241.1 PFAM: CoA-binding domain protein; KEGG: csa:Csal_1092 GCN5-related N-acetyltransferase YP_001413242.1 PFAM: heat shock protein Hsp20; KEGG: sme:SMc04040 probable heat shock protein YP_001413243.1 PFAM: Extracellular ligand-binding receptor; KEGG: pub:SAR11_1361 Leu/Ile/Val-binding protein precursor YP_001413244.1 PFAM: inner-membrane translocator; KEGG: pub:SAR11_1360 probable high-affinity branched-chain amino acid transport permease protein YP_001413245.1 PFAM: inner-membrane translocator; KEGG: pub:SAR11_1359 probable high-affinity branched-chain amino acid transport permease protein YP_001413246.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_1358 ATP-binding protein of ABC transporter NatA YP_001413247.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pub:SAR11_1357 ATP-binding protein of branched-chain amino acid ABC transporter YP_001413249.1 KEGG: dme:Dmel_CG13482 CG13482 YP_001413250.1 PFAM: carboxyl transferase; KEGG: bja:blr3940 putative propionyl-CoA carboxylase beta chain YP_001413252.1 PFAM: alpha/beta hydrolase fold; KEGG: rpa:RPA0888 putative lysophospholipase L2 YP_001413253.1 TIGRFAM: histidinol-phosphate phosphatase, putative; PFAM: inositol monophosphatase; KEGG: pen:PSEEN3013 inositol monophosphatase YP_001413254.1 PFAM: amidohydrolase 2; KEGG: hne:HNE_1399 amidohydrolase family protein YP_001413255.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sal:Sala_2303 GTP-binding protein TypA YP_001413256.1 KEGG: bbt:BBta_0772 hypothetical protein YP_001413257.1 KEGG: bbt:BBta_0773 hypothetical protein YP_001413258.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rpb:RPB_0799 transcriptional regulator, AraC family YP_001413259.1 PFAM: YceI family protein; KEGG: rde:RD1_3042 hypothetical protein YP_001413260.1 PFAM: major facilitator superfamily MFS_1; KEGG: rsh:Rsph17029_0041 major facilitator superfamily MFS_1 YP_001413261.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: tbd:Tbd_0524 hypothetical protein YP_001413262.1 KEGG: mmr:Mmar10_1174 hypothetical protein YP_001413263.1 PFAM: glycosyl transferase group 1; KEGG: mag:amb0265 glycosyltransferase YP_001413264.1 PFAM: metallophosphoesterase; KEGG: mag:amb0266 hypothetical protein YP_001413265.1 PFAM: diacylglycerol kinase catalytic region; KEGG: mag:amb0267 Sphingosine kinase and enzyme related to eukaryotic diacylglycerol kinase YP_001413266.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: hch:HCH_00332 glutamate synthase domain 2 YP_001413267.1 PFAM: Lytic transglycosylase catalytic; KEGG: gox:GOX2386 hypothetical protein YP_001413268.1 PFAM: N-formylglutamate amidohydrolase; KEGG: mag:amb2177 N-formylglutamate amidohydrolase YP_001413269.1 PFAM: response regulator receiver; KEGG: mes:Meso_2750 response regulator receiver protein YP_001413270.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA7103 putative HlyD-like secretion protein YP_001413271.1 PFAM: acriflavin resistance protein; KEGG: azo:azo3134 RND efflux transporter, permease protein YP_001413272.1 KEGG: mgm:Mmc1_0538 hypothetical protein YP_001413273.1 KEGG: abo:ABO_1014 hypothetical protein YP_001413275.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reh:H16_A0037 alpha-ketoglutarate-dependent taurine dioxygenase YP_001413276.1 PFAM: Glutathione S-transferase domain; KEGG: bja:bll5700 hypothetical glutathione S-transferase like protein YP_001413277.1 KEGG: azo:azo2253 probable exporter of RND superfamily YP_001413278.1 PFAM: protein of unknown function DUF1329; KEGG: shw:Sputw3181_1811 protein of unknown function DUF1329 YP_001413279.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mpt:Mpe_A0980 hypothetical protein YP_001413280.1 KEGG: bbt:BBta_2931 hypothetical protein YP_001413281.1 PFAM: protein of unknown function DUF35; KEGG: rpb:RPB_3587 protein of unknown function DUF35 YP_001413283.1 PFAM: nitroreductase; KEGG: bam:Bamb_6027 nitroreductase YP_001413284.1 KEGG: hne:HNE_1437 hypothetical protein YP_001413285.1 PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein YP_001413286.1 PFAM: regulatory protein LuxR; KEGG: rpe:RPE_1121 transcriptional regulator, LuxR family YP_001413287.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bte:BTH_I2358 lipase/esterase YP_001413289.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: nfa:nfa54220 putative acyl-CoA dehydrogenase YP_001413290.1 KEGG: maq:Maqu_3542 glutathione S-transferase, N-terminal domain YP_001413291.1 PFAM: major facilitator superfamily MFS_1; KEGG: mmr:Mmar10_2520 major facilitator superfamily MFS_1 YP_001413293.1 PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_3153 hydrolase, alpha/beta fold family YP_001413294.1 PFAM: response regulator receiver; KEGG: response regulator/sensor histidine kinase YP_001413295.1 PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation/phosphoacceptor; KEGG: bms:BR1659 sensor histidine kinase YP_001413296.1 KEGG: nwi:Nwi_0983 ribosomal protein L36 YP_001413297.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hydrolase, haloacid dehalogenase-like family; K07025 putative hydrolase of the HAD superfamily YP_001413298.1 PFAM: Saccharopine dehydrogenase; KEGG: ilo:IL1477 hypothetical protein YP_001413299.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_0984 TPR repeat protein YP_001413300.1 PFAM: alpha/beta hydrolase fold; KEGG: nha:Nham_1217 alpha/beta hydrolase fold YP_001413301.1 TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: nha:Nham_1218 pyruvate kinase YP_001413302.1 PFAM: MOFRL domain protein; KEGG: bbt:BBta_7083 putative hydroxypyruvate reductase YP_001413303.1 PFAM: N-formylglutamate amidohydrolase; KEGG: atc:AGR_L_2148 hypothetical protein YP_001413304.1 PFAM: protein of unknown function DUF1244; KEGG: xcb:XC_1932 hypothetical protein YP_001413305.1 KEGG: bbt:BBta_6866 hypothetical protein YP_001413306.1 PFAM: alpha/beta hydrolase fold; regulatory protein LuxR; KEGG: rha:RHA1_ro04883 probable hydrolase YP_001413307.1 PFAM: alpha/beta hydrolase fold; regulatory protein LuxR; KEGG: mxa:MXAN_6875 hydrolase, alpha/beta fold family YP_001413308.1 KEGG: rci:RRC32 hypothetical protein YP_001413309.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hne:HNE_1605 acetyltransferase, GNAT family YP_001413310.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bra:BRADO2432 nitrogen fixation regulation protein FixK, Crp/Fnr family YP_001413311.1 PFAM: response regulator receiver; KEGG: dar:Daro_3108 regulatory protein, LuxR:response regulator receiver YP_001413312.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: swi:Swit_5293 response regulator receiver protein YP_001413313.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: mlo:mll6607 two-component, nitrogen fixation sensor protein FixL YP_001413315.1 PFAM: Ion transport protein; KEGG: jan:Jann_0087 ion transport protein YP_001413316.1 KEGG: gme:Gmet_2969 hypothetical protein YP_001413317.1 KEGG: sme:SMc01416 hypothetical protein YP_001413318.1 KEGG: rpe:RPE_2464 hypothetical protein YP_001413320.1 KEGG: rru:Rru_A0809 hypothetical protein YP_001413321.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mlo:mll3001 response regulatory protein YP_001413322.1 PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A3328 OmpA/MotB YP_001413323.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: bov:BOV_A0076 oligoendopeptidase F YP_001413324.1 PFAM: ABC-1 domain protein; KEGG: hne:HNE_0567 ABC1 family protein YP_001413325.1 PFAM: thioesterase superfamily protein; KEGG: hypothetical protein YP_001413326.1 PFAM: alpha/beta hydrolase fold; KEGG: hne:HNE_3153 hydrolase, alpha/beta fold family YP_001413327.1 PFAM: amidohydrolase 2; KEGG: swi:Swit_1765 amidohydrolase 2 YP_001413328.1 PFAM: aa3 type cytochrome c oxidase subunit IV YP_001413329.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: nwi:Nwi_0995 alanine dehydrogenase/PNT YP_001413330.1 KEGG: rpc:RPC_3967 NAD(P) transhydrogenase subunit alpha part YP_001413331.1 PFAM: NAD(P) transhydrogenase beta subunit; KEGG: bov:BOV_A0911 NAD(P) transhydrogenase, beta subunit YP_001413332.1 KEGG: sal:Sala_2029 hypothetical protein YP_001413333.1 KEGG: sil:SPO2052 hypothetical protein YP_001413334.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV3622 hypothetical protein YP_001413335.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pst:PSPTO_3462 TonB-dependent siderophore receptor YP_001413336.1 PFAM: PepSY-associated TM helix domain protein; KEGG: hne:HNE_2173 PepSY-associated TM helix domain protein YP_001413337.1 KEGG: hypothetical protein YP_001413338.1 PFAM: ribosomal protein S21; KEGG: rle:RL4130 putative 30S ribosomal protein S21 YP_001413339.1 TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; KEGG: gbe:GbCGDNIH1_0482 peptide deformylase YP_001413340.1 TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; KEGG: jan:Jann_3890 RpsU-divergently transcribed YP_001413341.1 PFAM: protein of unknown function DUF1457; KEGG: rpb:RPB_2151 hypothetical protein YP_001413342.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: sil:SPO0892 phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_001413343.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: swi:Swit_3132 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_001413344.1 TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU1349 sulfate ABC transporter, ATP-binding protein YP_001413345.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bms:BR0109 sulfate ABC transporter, permease protein YP_001413346.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMb21132 putative sulfate uptake ABC transporter permease protein YP_001413347.1 PFAM: phosphate-selective porin O and P; KEGG: nmu:Nmul_A0898 phosphate-selective porin O and P YP_001413348.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PE00259 probable sulfate uptake ABC transporter, substrate-binding protein YP_001413349.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: ret:RHE_CH01133 putative transcriptional regulator protein YP_001413350.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmr:Mmar10_2568 diguanylate cyclase YP_001413351.1 PFAM: protein of unknown function DUF465; KEGG: rpc:RPC_3958 protein of unknown function DUF465 YP_001413352.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: mmr:Mmar10_2570 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001413353.1 PFAM: protein of unknown function DUF465; KEGG: nwi:Nwi_1004 protein of unknown function DUF465 YP_001413354.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mag:amb2501 acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II YP_001413355.1 PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mll5286 acetyl-CoA synthetase YP_001413356.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV7169 putative zinc-containing dehydrogenase YP_001413357.1 PFAM: regulatory protein MarR; KEGG: bja:bll7366 transcriptional regulatory protein YP_001413359.1 PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_1696 phenylacetic acid degradation-related protein YP_001413360.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mes:Meso_3434 short-chain dehydrogenase/reductase SDR YP_001413361.1 PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein YP_001413362.1 KEGG: dar:Daro_2057 twin-arginine translocation pathway signal YP_001413363.1 TIGRFAM: Quinone oxidoreductase putative PIG3; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mes:Meso_3406 alcohol dehydrogenase, zinc-binding YP_001413364.1 PFAM: protein of unknown function DUF1192; KEGG: mag:amb2678 hypothetical protein YP_001413365.1 PFAM: protein of unknown function DUF1465; KEGG: hypothetical protein YP_001413366.1 PFAM: ribosomal protein L31; KEGG: 50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 YP_001413367.1 TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_4490 ABC transporter, ATP-binding/permease protein YP_001413368.1 PFAM: Arylesterase; KEGG: lic:LIC10347 paraoxonase YP_001413369.1 PFAM: OmpA/MotB domain protein; KEGG: bmb:BruAb1_1699 OmpA family protein YP_001413370.1 KEGG: nha:Nham_3541 hypothetical protein YP_001413371.1 KEGG: mag:amb1287 lysophospholipase YP_001413372.1 PFAM: inositol monophosphatase; KEGG: bbt:BBta_6932 inositol monophosphatase YP_001413373.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001413374.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain protein repeat-containing protein YP_001413375.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; KEGG: rru:Rru_A1080 thiamine-phosphate diphosphorylase YP_001413376.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: mes:Meso_3436 fructose-bisphosphate aldolase, class-I YP_001413377.1 PFAM: phosphoglycerate kinase; KEGG: mes:Meso_3437 phosphoglycerate kinase YP_001413378.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: bra:BRADO1124 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) YP_001413379.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sme:SMc03978 transketolase YP_001413380.1 KEGG: hne:HNE_3456 hypothetical protein YP_001413381.1 PFAM: protein of unknown function DUF710; KEGG: bra:BRADO1128 hypothetical protein YP_001413382.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: nha:Nham_3528 5-formyltetrahydrofolate cyclo-ligase YP_001413383.1 PFAM: metallophosphoesterase; KEGG: bra:BRADO1139 metallo-phosphoesterase YP_001413384.1 KEGG: aci:ACIAD0599 hypothetical protein YP_001413385.1 PFAM: protein of unknown function DUF28; KEGG: rpa:RPA1097 hypothetical protein YP_001413386.1 TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: atc:AGR_L_2221 crossover junction endodeoxyribonuclease RuvC (holliday junction nuclease RuvC) YP_001413387.1 TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; KEGG: nha:Nham_3522 Holliday junction DNA helicase RuvA YP_001413388.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001413389.1 TIGRFAM: Pol-Pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: hypothetical protein YP_001413390.1 TIGRFAM: Tol-Pal system TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: mag:amb3214 biopolymer transport protein YP_001413391.1 TIGRFAM: Biopolymer transport TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bov:BOV_1641 protein TolR YP_001413392.1 KEGG: bms:BR1698 TolA protein YP_001413393.1 TIGRFAM: Tol-Pal system beta propeller repeat TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: atc:AGR_L_2244 TolB protein precursor YP_001413394.1 TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: rpa:RPA1123 omp16 protein YP_001413395.1 TIGRFAM: Tol-Pal system YbgF; KEGG: rru:Rru_A1096 hypothetical protein YP_001413396.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: ExsB family protein; PP-loop domain protein; KEGG: mag:amb3207 predicted ATPase of the PP-loop superfamily implicated in cell cycle control YP_001413397.1 KEGG: rpa:RPA1126 metalloprotease (cell division protein) FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001413398.1 PFAM: ferredoxin; KEGG: mmr:Mmar10_0081 ferredoxin YP_001413399.1 PFAM: cytochrome P450; KEGG: pol:Bpro_5301 cytochrome P450 YP_001413400.1 PFAM: regulatory protein TetR; KEGG: aha:AHA_3547 LitR, transcriptional regulator YP_001413401.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; KEGG: sty:HCM1.222 dihydropteroate synthase YP_001413402.1 TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: bja:bll7408 phosphoglucomutase/phosphomannomutase YP_001413403.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mmr:Mmar10_0552 phosphomethylpyrimidine kinase YP_001413404.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: mlo:mll0059 transcriptional regulator YP_001413405.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: mag:amb3196 predicted epimerase, PhzC/PhzF homolog YP_001413406.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rle:RL3242 putative transmembrane transporter protein YP_001413407.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: mmr:Mmar10_0553 protein of unknown function DUF6, transmembrane YP_001413408.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate YP_001413409.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001413411.1 PFAM: protein of unknown function DUF1457 YP_001413412.1 PFAM: pentapeptide repeat protein; KEGG: pentapeptide repeat family protein YP_001413413.1 PFAM: OsmC family protein; KEGG: bur:Bcep18194_B2297 OsmC-like protein YP_001413414.1 PFAM: Pirin domain protein; KEGG: nha:Nham_0009 pirin-like YP_001413415.1 PFAM: adenylosuccinate synthetase; KEGG: mes:Meso_3159 adenylosuccinate synthetase YP_001413416.1 KEGG: rde:RD1_1607 inner membrane protein YP_001413417.1 KEGG: xcb:XC_1469 inner membrane protein YP_001413418.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: mes:Meso_3082 2-nitropropane dioxygenase, NPD YP_001413419.1 KEGG: eli:ELI_11775 hypothetical protein YP_001413420.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001413421.1 KEGG: ret:RHE_CH03261 putative bleomycin resistance protein YP_001413422.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: bbt:BBta_6231 putative G/U mismatch-specific DNA glycosylase YP_001413423.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: reu:Reut_B5252 hypothetical protein YP_001413425.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bxe:Bxe_A2154 putative phospholipase D precursor YP_001413426.1 KEGG: rha:RHA1_ro10139 possible ketosteroid isomerase-related protein YP_001413427.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: bja:blr0834 peptide methionine sulfoxide reductase YP_001413429.1 PFAM: protein of unknown function UPF0118; KEGG: mlo:mlr4869 hypothetical protein YP_001413430.1 TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rru:Rru_A1110 sigma 32 (RpoH) YP_001413431.1 PFAM: HipA domain protein; KEGG: hypothetical protein YP_001413432.1 PFAM: helix-turn-helix domain protein; KEGG: transcriptional regulator, Cro/CI family YP_001413433.1 KEGG: pna:Pnap_0085 putative transcriptional regulator YP_001413435.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: sme:SMc00647 putative ribosomal large subunit pseudouridine synthase protein YP_001413436.1 TIGRFAM: methyltransferase FkbM family; KEGG: acr:Acry_1688 methyltransferase FkbM family YP_001413437.1 PFAM: membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG); KEGG: gvi:glr3057 probable glutathione S-transferase YP_001413438.1 KEGG: rpa:RPA1622 hypothetical protein YP_001413439.1 PFAM: conserved hypothetical protein; KEGG: azo:azo0042 conserved hypothetical secreted protein YP_001413440.1 KEGG: mgm:Mmc1_0209 hypothetical protein YP_001413441.1 KEGG: cch:Cag_1043 hypothetical protein YP_001413442.1 PFAM: conserved hypothetical protein; KEGG: pat:Patl_2138 uncharacterised conserved protein UCP025560 YP_001413443.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: hne:HNE_0169 3'(2'),5'-bisphosphate nucleotidase YP_001413444.1 KEGG: bbt:BBta_6560 hypothetical protein YP_001413445.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: mlo:mll2816 two-component transcriptional regulator YP_001413446.1 involved in type III protein export during flagellum assembly YP_001413447.1 TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ YP_001413448.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_001413449.1 KEGG: mmr:Mmar10_1731 hypothetical protein YP_001413450.1 membrane protein involved in the flagellar export apparatus YP_001413451.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: transcriptional regulator FlbD YP_001413452.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rpb:RPB_1275 flagellar motor switch FliN YP_001413453.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001413454.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001413455.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: rpc:RPC_0941 flagellar M-ring protein FliF YP_001413456.1 PFAM: protein of unknown function DUF1153; KEGG: rle:RL3754 hypothetical protein YP_001413457.1 PFAM: flagellar hook capping protein; KEGG: bra:BRADO5897 putative flagellar basal-body rod modification protein FlgD YP_001413458.1 PFAM: flagellar hook-length control protein; KEGG: rpe:RPE_1040 flagellar hook-length control protein YP_001413459.1 PFAM: ExsB family protein; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: mes:Meso_2217 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_001413460.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gbe:GbCGDNIH1_2260 phosphatidyl-N-methylethanolamine N-methyltransferase YP_001413461.1 KEGG: shw:Sputw3181_3583 hypothetical protein YP_001413463.1 PFAM: pseudouridine synthase; KEGG: mmr:Mmar10_0793 pseudouridine synthase YP_001413464.1 PFAM: SlyX family protein; KEGG: rpc:RPC_1351 SlyX YP_001413465.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: dar:Daro_2472 excinuclease ABC, C subunit, N-terminal YP_001413466.1 PFAM: Exopolysaccharide synthesis ExoD; KEGG: mes:Meso_1827 exopolysaccharide synthesis, ExoD YP_001413467.1 PFAM: Glutathione S-transferase domain; KEGG: psb:Psyr_1175 glutathione S-transferase, N-terminal:glutathione S-transferase, C-terminal YP_001413468.1 KEGG: noc:Noc_2028 hypothetical protein YP_001413469.1 PFAM: protein of unknown function DUF323; KEGG: nca:Noca_1640 protein of unknown function DUF323 YP_001413470.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: nha:Nham_2034 cold-shock DNA-binding domain protein YP_001413473.1 PFAM: high-affinity nickel-transporter; KEGG: sme:SMc02986 hypothetical protein YP_001413474.1 PFAM: protein of unknown function DUF1007; KEGG: rpb:RPB_4544 protein of unknown function DUF1007 YP_001413475.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpb:RPB_4674 acyl-CoA dehydrogenase-like YP_001413476.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: hne:HNE_3080 acyl-CoA dehydrogenase family protein YP_001413477.1 activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence YP_001413479.1 KEGG: nar:Saro_2258 protein of unknown function UPF0191 YP_001413480.1 PFAM: regulatory protein TetR; KEGG: rxy:Rxyl_1811 transcriptional regulator, TetR family YP_001413481.1 KEGG: hypothetical protein YP_001413482.1 PFAM: alpha/beta hydrolase fold; KEGG: plu:plu2437 hypothetical protein YP_001413483.1 PFAM: response regulator receiver; KEGG: rpc:RPC_3108 response regulator receiver domain protein (CheY-like) YP_001413484.1 KEGG: nwi:Nwi_1333 Hpt protein YP_001413485.1 PFAM: response regulator receiver; KEGG: nha:Nham_1662 response regulator receiver domain protein (CheY-like) YP_001413486.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO4190 putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase YP_001413487.1 KEGG: rru:Rru_A3292 hypothetical protein YP_001413488.1 PFAM: NUDIX hydrolase; KEGG: nha:Nham_3259 NUDIX hydrolase YP_001413490.1 KEGG: bov:BOV_1568 hypothetical protein YP_001413491.1 KEGG: sme:SMc02708 putative glutathione S-transferase YP_001413492.1 PFAM: Pirin domain protein; KEGG: conserved hypothetical protein YP_001413493.1 TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: acr:Acry_2002 flavoprotein WrbA YP_001413494.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A2257 transcriptional regulator, LysR family YP_001413496.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_3099 oxidoreductase, short chain dehydrogenase/reductase family YP_001413497.1 KEGG: rpc:RPC_1384 GCN5-related N-acetyltransferase YP_001413498.1 PFAM: periplasmic solute binding protein; KEGG: bbr:BB0185 putative periplasmic solute binding protein YP_001413499.1 PFAM: ABC-3 protein; KEGG: pst:PSPTO_2634 cation ABC transporter, permease protein YP_001413500.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: psp:PSPPH_2501 cation ABC transporter, ATP-binding protein YP_001413501.1 PFAM: protein of unknown function UPF0060; KEGG: nwi:Nwi_1459 hypothetical protein YP_001413502.1 KEGG: rpd:RPD_1292 hypothetical protein YP_001413503.1 TIGRFAM: conserved hypothetical membrane protein; KEGG: rpc:RPC_0914 double-transmembrane region-like YP_001413504.1 PFAM: protein of unknown function DUF58; KEGG: mag:amb3863 hypothetical protein YP_001413505.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mag:amb4161 MoxR-like ATPase YP_001413506.1 PFAM: protein of unknown function DUF1285; KEGG: psb:Psyr_1659 protein of unknown function DUF1285 YP_001413507.1 PFAM: NUDIX hydrolase; KEGG: mmr:Mmar10_0727 NUDIX hydrolase YP_001413508.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: tRNA nucleotidyltransferase (CCA-adding enzyme) YP_001413510.1 KEGG: yen:YE1502 putative lipoprotein YP_001413511.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_001413512.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: spoU rRNA methylase family protein YP_001413513.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: bbt:BBta_p0097 ubiquinol-cytochrome c reductase iron-sulfur subunit YP_001413514.1 PFAM: Cytochrome b/b6 domain; KEGG: ubiquinol-cytochrome c reductase cytochrome b subunit YP_001413515.1 PFAM: cytochrome c1; KEGG: bja:blr2486 cytochrome b/c1 precursor YP_001413516.1 TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine phosphorylase family 2; KEGG: gbe:GbCGDNIH1_1721 5'-methylthioadenosine phosphorylase YP_001413517.1 TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: bbt:BBta_2310 adenine phosphoribosyltransferase YP_001413518.1 TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; KEGG: mag:amb4123 methylthioribose-1-phosphate isomerase YP_001413519.1 PFAM: class II aldolase/adducin family protein; KEGG: rru:Rru_A0359 class II aldolase/adducin-like YP_001413520.1 PFAM: glutathione peroxidase; KEGG: mag:amb3627 phospholipid hydroperoxide glutathione peroxidase YP_001413521.1 PFAM: OsmC family protein; KEGG: bja:bll0735 organic hydroperoxide resistance protein YP_001413522.1 PFAM: regulatory protein MarR; KEGG: rfr:Rfer_0573 transcriptional regulator, MarR family YP_001413523.1 PFAM: dienelactone hydrolase; KEGG: sal:Sala_2285 carboxymethylenebutenolidase YP_001413524.1 PFAM: MaoC domain protein dehydratase; KEGG: nwi:Nwi_2507 MaoC-like dehydratase YP_001413525.1 PFAM: MaoC domain protein dehydratase; KEGG: mpt:Mpe_A3698 MaoC-related protein YP_001413526.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: bja:bll7439 GTP-binding protein YP_001413527.1 PFAM: peptidyl-tRNA hydrolase; KEGG: bja:bll7440 peptidyl-tRNA hydrolase YP_001413528.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: mes:Meso_2157 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001413529.1 TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: mes:Meso_2155 ribose-phosphate pyrophosphokinase YP_001413530.1 KEGG: mag:amb0592 hypothetical protein YP_001413531.1 PFAM: protein of unknown function DUF152; KEGG: mes:Meso_2152 protein of unknown function DUF152 YP_001413532.1 PFAM: protein of unknown function DUF185; KEGG: mag:amb0594 hypothetical protein YP_001413533.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mes:Meso_2150 prolipoprotein diacylglyceryl transferase YP_001413534.1 PFAM: protein of unknown function DUF526; KEGG: rpb:RPB_4162 protein of unknown function DUF526 YP_001413535.1 PFAM: Protein of unknown function DUF1790; KEGG: rpc:RPC_1407 hypothetical protein YP_001413536.1 TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: rsh:Rsph17029_3009 pyrroline-5-carboxylate reductase YP_001413537.1 PFAM: regulatory protein TetR; KEGG: rru:Rru_A3282 hypothetical protein YP_001413538.1 KEGG: mxa:MXAN_2409 hypothetical protein YP_001413539.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpc:RPC_1385 periplasmic sensor signal transduction histidine kinase YP_001413540.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpa:RPA4368 two-component transcriptional regulator, winged helix family YP_001413541.1 PFAM: regulatory protein MarR; KEGG: mag:amb0550 transcriptional regulator YP_001413542.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001413543.1 PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1883 phenylacetic acid degradation-related protein YP_001413544.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mlo:mlr7915 molybdopterin converting factor, subunit 2 YP_001413545.1 TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bbt:BBta_1725 molybdenum cofactor biosynthesis protein D YP_001413546.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sme:SMc00601 probable CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase transmembrane protein YP_001413547.1 TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: mes:Meso_1975 excinuclease ABC, C subunit YP_001413548.1 TIGRFAM: dihydroneopterin aldolase; KEGG: rru:Rru_A2219 dihydroneopterin aldolase family YP_001413549.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A2218 short-chain dehydrogenase/reductase SDR YP_001413550.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: jan:Jann_3921 K+-dependent Na+/Ca+ exchanger related-protein YP_001413551.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sde:Sde_1457 K+ efflux antiporter, putative (KEA1) YP_001413552.1 PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: mlo:mlr8466 hypothetical protein YP_001413553.1 KEGG: nha:Nham_2462 hypothetical protein YP_001413554.1 KEGG: dge:Dgeo_1743 short chain dehydrogenase YP_001413555.1 KEGG: aha:AHA_3401 hypothetical protein YP_001413556.1 KEGG: bja:bll7605 hypothetical protein YP_001413558.1 KEGG: plt:Plut_1873 hypothetical protein YP_001413559.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001413562.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hma:rrnAC0720 hypothetical protein YP_001413563.1 PFAM: regulatory protein TetR; KEGG: pfl:PFL_4531 transcriptional regulator, TetR family YP_001413564.1 PFAM: regulatory protein TetR; KEGG: bvi:Bcep1808_5478 transcriptional regulator, TetR family YP_001413565.1 TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: sde:Sde_0123 sortase (surface protein transpeptidase)-like YP_001413566.1 PFAM: Vault protein inter-alpha-trypsin domain protein; SMART: von Willebrand factor type A; Vault protein inter-alpha-trypsin, metazoa; KEGG: ret:RHE_CH03000 hypothetical protein YP_001413567.1 PFAM: Glutathione S-transferase domain; KEGG: pfl:PFL_4361 glutathione S-transferase YP_001413568.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: rxy:Rxyl_0136 transcriptional regulator, GntR family YP_001413569.1 KEGG: eli:ELI_10250 hypothetical protein YP_001413570.1 KEGG: rso:RSc3120 hypothetical protein YP_001413571.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001413572.1 PFAM: peptidase M48 Ste24p; KEGG: mmr:Mmar10_1850 peptidase M48, Ste24p YP_001413573.1 PFAM: Ferritin Dps family protein; KEGG: mfa:Mfla_1120 ferritin and Dps YP_001413574.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mlo:mll5344 hypothetical protein YP_001413575.1 PFAM: sulfotransferase; KEGG: noc:Noc_0082 sulfotransferase YP_001413576.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mmr:Mmar10_2145 thioredoxin reductase YP_001413577.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tcx:Tcr_1387 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_001413578.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: azo:azo2598 conserved hypothetical secreted protein YP_001413579.1 KEGG: gbe:GbCGDNIH1_0635 hypothetical cytosolic protein YP_001413580.1 KEGG: acr:Acry_1264 hypothetical protein YP_001413581.1 PFAM: protein of unknown function DUF1022; KEGG: rru:Rru_A1980 protein of unknown function DUF1022 YP_001413582.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: sit:TM1040_0615 transcriptional regulator, AsnC family YP_001413583.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: mes:Meso_2118 transcription elongation factor GreA YP_001413584.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: mag:amb0702 carbamoylphosphate synthase large subunit YP_001413585.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: rpa:RPA1276 carbamoyl-phosphate synthase small subunit YP_001413586.1 PFAM: GatB/Yqey domain protein; KEGG: rru:Rru_A2884 GatB/YqeY YP_001413587.1 TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; KEGG: mes:Meso_1464 DNA primase YP_001413588.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_001413589.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1612 UbiE/COQ5 methyltransferase YP_001413591.1 PFAM: ThiJ/PfpI domain protein; KEGG: bur:Bcep18194_B2746 ThiJ/PfpI family protein YP_001413592.1 PFAM: protein of unknown function DUF541; KEGG: mes:Meso_2073 protein of unknown function DUF541 YP_001413594.1 KEGG: vei:Veis_2327 hypothetical protein YP_001413595.1 KEGG: rpe:RPE_2456 hypothetical protein YP_001413596.1 TIGRFAM: outer membrane autotransporter barrel domain; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_4364 outer membrane autotransporter barrel domain YP_001413597.1 PFAM: regulatory protein LuxR; response regulator receiver; LexA DNA-binding domain protein; Bacterio-opsin activator HTH domain protein; Sigma-70 region 4 type 2; KEGG: pde:Pden_4349 two component transcriptional regulator, LuxR family YP_001413598.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_4041 integral membrane sensor hybrid histidine kinase YP_001413604.1 KEGG: nwi:Nwi_2083 hypothetical protein YP_001413605.1 KEGG: bra:BRADO1453 hypothetical protein YP_001413606.1 KEGG: fjo:Fjoh_3632 hypothetical protein YP_001413607.1 KEGG: nha:Nham_4460 hypothetical protein YP_001413608.1 PFAM: integrase family protein; KEGG: rsh:Rsph17029_2267 phage integrase family protein YP_001413609.1 PFAM: metallophosphoesterase; KEGG: bam:Bamb_5979 metallophosphoesterase YP_001413610.1 KEGG: bcn:Bcen_5856 hypothetical protein YP_001413611.1 KEGG: pin:Ping_2566 hypothetical protein YP_001413612.1 PFAM: protein of unknown function DUF45; KEGG: mca:MCA1894 hypothetical protein YP_001413613.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: mca:MCA1893 type I restriction-modification system, R subunit YP_001413614.1 KEGG: nwi:Nwi_3122 hypothetical protein YP_001413615.1 PFAM: restriction modification system DNA specificity domain; KEGG: lpc:LPC_2789 hypothetical protein YP_001413616.1 KEGG: nwi:Nwi_3119 putative DNA-binding protein YP_001413617.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: putative RNA methylase; N-6 DNA methylase; Eco57I restriction endonuclease; KEGG: mca:MCA1888 type I restriction-modification system, M subunit YP_001413618.1 KEGG: mca:MCA1886 hypothetical protein YP_001413619.1 KEGG: bja:blr2300 hypothetical protein YP_001413620.1 KEGG: bja:blr2299 hypothetical protein YP_001413621.1 PFAM: Integrase catalytic region; KEGG: nha:Nham_1364 integrase, catalytic region YP_001413622.1 KEGG: nha:Nham_1363 hypothetical protein YP_001413623.1 PFAM: beta-lactamase domain protein; KEGG: pfo:Pfl_2454 beta-lactamase-like YP_001413624.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: ret:RHE_PF00222 probable two-component sensor histidine kinase protein YP_001413625.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: ret:RHE_PF00223 two-component response regulator protein (NodW mutant supressor protein) YP_001413626.1 PFAM: response regulator receiver; KEGG: rle:pRL120791 putative two-component response regulator transcriptional regulatory protein YP_001413627.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: ret:RHE_PF00225 probable two-component response regulator protein YP_001413628.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:bll2792 NADH dehydrogenase YP_001413629.1 PFAM: secretion protein HlyD family protein; KEGG: sme:SMb20699 putative protein secretion protein, HlyD family, similar to E. coli EmrK YP_001413630.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMb20698 putative transport protein, similar to E. coli multidrug resistance protein EmrB YP_001413631.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMb20871 putative dehydrogenasereductase, short-chain dehydrogenase/reductase protein YP_001413632.1 PFAM: alpha/beta hydrolase fold; KEGG: rle:RL2967 putative non-heme chloroperoxidase YP_001413633.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001413634.1 KEGG: rpe:RPE_2440 hypothetical protein YP_001413635.1 PFAM: RES domain protein; KEGG: rle:pRL110092 hypothetical protein YP_001413636.1 KEGG: ret:RHE_PE00061 hypothetical protein YP_001413637.1 KEGG: rsq:Rsph17025_4156 hypothetical protein YP_001413638.1 KEGG: mjl:Mjls_2690 hypothetical protein YP_001413639.1 PFAM: Pirin domain protein; KEGG: pde:Pden_3510 pirin domain protein domain protein YP_001413640.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: atc:AGR_L_471GM hypothetical protein YP_001413641.1 PFAM: isochorismatase hydrolase; KEGG: rle:RL0306 putative isochorismatase family protein YP_001413642.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis YP_001413643.1 PFAM: aldehyde dehydrogenase; KEGG: hne:HNE_2500 aldehyde dehydrogenase family protein YP_001413644.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: mpt:Mpe_A0112 Kef-type K+ transport YP_001413645.1 PFAM: Endoribonuclease L-PSP; KEGG: reh:H16_A1805 putative translation initiation inhibitor,yjgFfamily YP_001413646.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bja:bll5692 two-component hybrid sensor and regulator YP_001413647.1 PFAM: regulatory protein LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bja:bll1714 two component regulator YP_001413648.1 PFAM: response regulator receiver; KEGG: aba:Acid345_3728 response regulator receiver protein YP_001413649.1 PFAM: isochorismatase hydrolase; KEGG: ppu:PP_3976 hydrolase, isochorismatase family YP_001413650.1 PFAM: Amidohydrolase 3; KEGG: acb:A1S_1451 hypothetical protein YP_001413651.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: reu:Reut_A2884 protein of unknown function DUF894, DitE:major facilitator superfamily MFS_1 YP_001413652.1 PFAM: DoxX family protein; KEGG: rfr:Rfer_2574 DoxX YP_001413653.1 KEGG: gsu:GSU0801 hypothetical protein YP_001413654.1 PFAM: regulatory protein ArsR; KEGG: bbr:BB0936 putative ArsR family transcriptional regulator YP_001413655.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: lil:LA3214 hypothetical protein YP_001413656.1 KEGG: sma:SAV521 hypothetical protein YP_001413657.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bja:blr7360 hypothetical protein YP_001413658.1 PFAM: regulatory protein ArsR; KEGG: bja:blr7359 transcriptional regulatory protein YP_001413659.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_001413660.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pmy:Pmen_3214 AraC-type transcriptional regulator domain protein YP_001413661.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pmy:Pmen_3215 short-chain dehydrogenase/reductase SDR YP_001413662.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sensor histidine kinase/response regulator YP_001413663.1 PFAM: protein of unknown function DUF1457 YP_001413664.1 PFAM: toluene tolerance family protein; KEGG: hypothetical protein YP_001413665.1 PFAM: VacJ family lipoprotein; KEGG: mag:amb0433 surface lipoprotein YP_001413666.1 PFAM: regulatory protein ArsR; Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb0432 SAM-dependent methyltransferase YP_001413667.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: 5,10-methylenetetrahydrofolate reductase YP_001413668.1 PFAM: homocysteine S-methyltransferase; KEGG: pae:PA1843 methionine synthase YP_001413669.1 TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; KEGG: ret:RHE_CH02901 5-methyltetrahydrofolate--homocysteine S-methyltransferase protein YP_001413670.1 PFAM: helix-turn-helix HxlR type; KEGG: bja:blr7748 transcriptional regulatory protein YP_001413671.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bur:Bcep18194_B0960 carboxymuconolactone decarboxylase YP_001413672.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pen:PSEEN5326 alcohol dehydrogenase, zinc-containing YP_001413673.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: ret:RHE_PE00300 probable N-methylhydantoinase (ATP-hydrolyzing)/5-oxoprolinase protein YP_001413674.1 PFAM: heat shock protein DnaJ domain protein; KEGG: mmr:Mmar10_2092 heat shock protein DnaJ domain protein YP_001413675.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: hch:HCH_01819 permease of the drug/metabolite transporter (DMT) superfamily YP_001413676.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase family 2; KEGG: rpb:RPB_1985 negative regulator of AmpC, AmpD YP_001413677.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: NADP-dependent quinone oxidoreductase, putative YP_001413678.1 PFAM: protein of unknown function UPF0040; KEGG: rbe:RBE_0539 MraZ protein YP_001413679.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: mag:amb3840 S-adenosyl-methyltransferase MraW YP_001413680.1 KEGG: nwi:Nwi_1044 hypothetical protein YP_001413681.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase YP_001413682.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: mag:amb3843 UDP-N-acetylmuramyl tripeptide synthase YP_001413683.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: rpb:RPB_1990 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase YP_001413684.1 TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; KEGG: mag:amb3845 UDP-N-acetylmuramyl pentapeptide phosphotransferase YP_001413685.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001413686.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: mes:Meso_2008 cell division protein FtsW YP_001413687.1 TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: gbe:GbCGDNIH1_0429 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_001413688.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001413689.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; KEGG: mag:amb3850 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001413690.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; KEGG: sme:SMc01871 D-alanylalanine synthetase YP_001413691.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: mes:Meso_2003 polypeptide-transport-associated, FtsQ-type YP_001413692.1 PFAM: cell division protein FtsA; KEGG: mag:amb3853 actin-like ATPase involved in cell division YP_001413693.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: bmb:BruAb1_1420 FtsZ, cell division protein FtsZ YP_001413694.1 PFAM: acyltransferase 3; KEGG: azo:azo3255 acyltransferase YP_001413695.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_001413696.1 KEGG: mag:amb3856 DNA uptake lipoprotein YP_001413697.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rpc:RPC_3295 DNA repair protein RecN YP_001413698.1 KEGG: mmr:Mmar10_2066 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_001413699.1 KEGG: rpe:RPE_3493 protein involved in cellulose biosynthesis (CelD)-like protein YP_001413700.1 PFAM: creatinase; peptidase M24; KEGG: bms:BR1418 aminopeptidase P YP_001413701.1 PFAM: putative RNA methylase; methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bmb:BruAb1_1412 ribosomal protein L11 methyltransferase, hypothetical YP_001413702.1 PFAM: UvrD/REP helicase; KEGG: ret:RHE_CH02819 DNA helicase II protein YP_001413703.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: bur:Bcep18194_C6569 Cl-channel, voltage gated YP_001413704.1 KEGG: rpe:RPE_2139 hypothetical protein YP_001413705.1 PFAM: FAD linked oxidase domain protein; KEGG: rru:Rru_A1124 D-lactate dehydrogenase (cytochrome) YP_001413706.1 PFAM: secretion protein HlyD family protein; KEGG: tbd:Tbd_1084 HlyD family secretion protein YP_001413707.1 PFAM: regulatory protein TetR; KEGG: rso:RSc0698 putative transcription regulator protein YP_001413709.1 PFAM: AsmA family protein; KEGG: ret:RHE_CH02803 hypothetical protein YP_001413710.1 involved in siderophore biosynthesis; KEGG: rru:Rru_A2208 hypothetical protein YP_001413711.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001413712.1 PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein YP_001413713.1 PFAM: peptidase M19 renal dipeptidase; KEGG: mmr:Mmar10_0282 peptidase M19, renal dipeptidase YP_001413714.1 PFAM: thymidylate synthase; KEGG: bmb:BruAb1_1394 ThyA, thymidylate synthase YP_001413715.1 PFAM: dihydrofolate reductase region; KEGG: dihydrofolate reductase YP_001413716.1 KEGG: bja:bll7793 similar to PEP2 protein YP_001413717.1 TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gvi:glr4425 glutathione dependent formaldehyde dehydrogenase YP_001413718.1 TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; KEGG: esterase YP_001413719.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: bbt:BBta_0261 hypothetical protein YP_001413720.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: hne:HNE_0464 putative gluconolactonase YP_001413721.1 KEGG: hypothetical protein YP_001413722.1 PFAM: protein of unknown function DUF1428; KEGG: sal:Sala_0015 protein of unknown function DUF1428 YP_001413723.1 PFAM: protein of unknown function DUF59; KEGG: mag:amb3487 ATPase involved in chromosome partitioning YP_001413724.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: bja:bll6509 putative membrane bound protease protein YP_001413725.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rpa:RPA3490 putative hflC protein YP_001413726.1 KEGG: mlo:msl1453 hypothetical protein YP_001413727.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mlo:mll1451 probable serine protease YP_001413728.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bbt:BBta_6089 phosphoserine phosphatase YP_001413729.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; KEGG: rpa:RPA2030 tRNA isopentenyltransferase YP_001413730.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: acetolactate synthase large subunit YP_001413731.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rru:Rru_A0468 acetolactate synthase, small subunit YP_001413732.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001413733.1 KEGG: sco:SCO0976 hypothetical protein YP_001413734.1 PFAM: globin; KEGG: hne:HNE_0903 globin domain protein YP_001413735.1 KEGG: bja:blr2879 hypothetical protein YP_001413736.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mlo:mll2984 cation efflux system protein YP_001413737.1 PFAM: regulatory protein ArsR; KEGG: bxe:Bxe_A0960 transcriptional regulator, ArsR family YP_001413738.1 PFAM: regulatory protein MarR; KEGG: pst:PSPTO_0818 transcriptional regulator, MarR family YP_001413739.1 PFAM: nitroreductase; KEGG: sen:SACE_6504 oxidoreductase YP_001413740.1 TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: dar:Daro_3552 phosphoribosylglycinamide formyltransferase 2 YP_001413741.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: lpp:plpp0104 hypothetical protein YP_001413742.1 KEGG: tfu:Tfu_1573 hypothetical protein YP_001413743.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: hne:HNE_3087 K+-dependent Na+/Ca+ exchanger related-protein YP_001413744.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cvi:CV0720 probable transcriptional regulator LysR family YP_001413745.1 functions in MreBCD complex in some organisms YP_001413746.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: rsq:Rsph17025_1601 rod shape-determining protein MreC YP_001413747.1 KEGG: rru:Rru_A0472 rod shape-determining protein MreD YP_001413748.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: rru:Rru_A0473 peptidoglycan glycosyltransferase YP_001413749.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: mag:amb3517 bacterial cell division membrane protein YP_001413750.1 KEGG: reu:Reut_B4998 hypothetical protein YP_001413751.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mag:amb1428 superfamily II DNA and RNA helicase YP_001413752.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: bbt:BBta_2459 putative magnesium/cobalt transport protein YP_001413753.1 PFAM: Phosphoglycerate mutase; KEGG: mag:amb0541 fructose-2,6-bisphosphatase YP_001413754.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpa:RPA3967 putative threonine dehydratase YP_001413755.1 KEGG: rpa:RPA3966 hypothetical protein YP_001413756.1 KEGG: mmr:Mmar10_2009 hypothetical protein YP_001413757.1 PFAM: acyltransferase 3; KEGG: bch:Bcen2424_3971 acyltransferase 3 YP_001413758.1 KEGG: sde:Sde_0483 hypothetical protein YP_001413759.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmr:Mmar10_2007 methyltransferase type 11 YP_001413760.1 PFAM: glycosyl transferase group 1; KEGG: nca:Noca_2799 glycosyl transferase, group 1 YP_001413761.1 KEGG: bbt:BBta_2163 hypothetical protein YP_001413763.1 PFAM: alpha/beta hydrolase fold; KEGG: epoxide hydrolase YP_001413764.1 PFAM: FAD dependent oxidoreductase; KEGG: hne:HNE_2414 hypothetical protein YP_001413765.1 PFAM: protein of unknown function DUF423; KEGG: psa:PST_3985 uncharacterized small membrane protein YP_001413766.1 KEGG: hne:HNE_2926 hypothetical protein YP_001413767.1 PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein YP_001413768.1 KEGG: hypothetical protein YP_001413769.1 PFAM: proton/sugar symporter LacY; nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: mag:amb2280 permease of the major facilitator superfamily YP_001413770.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bra:BRADO4030 putative TauD/TfdA family dioxygenase YP_001413771.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_0255 alcohol dehydrogenase, zinc-binding protein YP_001413772.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A2755 glyoxalase/bleomycin resistance protein/dioxygenase YP_001413773.1 PFAM: regulatory protein ArsR; KEGG: transcriptional regulator, ArsR family YP_001413774.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_4061 hypothetical protein YP_001413775.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: rpe:RPE_1470 mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein YP_001413776.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: bbt:BBta_7152 putative adenylate/guanylyl cyclase with a CHASE2 domain YP_001413777.1 PFAM: cytochrome c class I; KEGG: rde:RD1_1518 cytochrome c2 YP_001413778.1 PFAM: protein of unknown function DUF140; KEGG: pen:PSEEN0098 ABC transporter, permease protein YP_001413779.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsh:Rsph17029_1488 ABC transporter related YP_001413780.1 PFAM: Mammalian cell entry related domain protein; KEGG: pen:PSEEN0096 hypothetical protein YP_001413781.1 KEGG: yen:YE1250 hypothetical protein YP_001413782.1 KEGG: sme:SMc00190 hypothetical protein YP_001413783.1 PFAM: Hpt domain protein; KEGG: mmr:Mmar10_1987 Hpt protein YP_001413784.1 PFAM: FAD dependent oxidoreductase; KEGG: mpt:Mpe_A1030 putative conserved exported protein YP_001413785.1 PFAM: sulfatase; KEGG: mlo:mlr3684 phosphonate monoester hydrolase YP_001413786.1 PFAM: ferredoxin; KEGG: bra:BRADO5081 2Fe-2S ferredoxin (FdII) YP_001413787.1 PFAM: Chorismate mutase; KEGG: hne:HNE_0317 putative chorismate mutase, type II YP_001413788.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpe:RPE_1478 thioredoxin-disulfide reductase YP_001413789.1 PFAM: ferredoxin; KEGG: rru:Rru_A2026 ferredoxin YP_001413790.1 KEGG: gvi:gll2512 hypothetical protein YP_001413791.1 KEGG: bbt:BBta_2426 hypothetical protein YP_001413792.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mmr:Mmar10_2552 methyltransferase type 11 YP_001413793.1 KEGG: bra:BRADO2645 hypothetical protein YP_001413796.1 involved in DNA repair; KEGG: mag:amb2999 nucleotidyltransferase/DNA polymerase involved in DNA repair YP_001413797.1 KEGG: mmr:Mmar10_1831 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001413798.1 KEGG: pmy:Pmen_3703 hypothetical protein YP_001413799.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sme:SMb20368 hypothetical protein YP_001413800.1 PFAM: protein of unknown function DUF214; KEGG: mag:amb2765 ABC-type transport system YP_001413801.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2766 ABC-type antimicrobial peptide transport system YP_001413802.1 KEGG: hypothetical protein; K09989 hypothetical protein YP_001413805.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ret:RHE_CH02733 probable SAM-dependent methyltransferase protein YP_001413807.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rpd:RPD_3462 ATPase associated with various cellular activities, AAA_5 YP_001413808.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: bbt:BBta_7242 putative flagellar hook protein FlgE YP_001413809.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rpb:RPB_3816 flagellar hook-associated protein YP_001413810.1 KEGG: nwi:Nwi_1101 hypothetical protein YP_001413811.1 KEGG: rle:RL0598 hypothetical protein YP_001413812.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_0025 transcriptional regulator, TetR family YP_001413813.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_3131 oxidoreductase, short chain dehydrogenase/reductase family protein YP_001413814.1 PFAM: CBS domain containing protein; HPP family protein?; KEGG: pde:Pden_0317 CBS domain containing protein YP_001413815.1 PFAM: flagellar FlaF family protein; KEGG: rpd:RPD_1673 flagellar FlaF YP_001413816.1 PFAM: flagellar FlbT family protein; KEGG: bja:blr5847 putative flagellar protein FlbT YP_001413817.1 KEGG: bbt:BBta_5530 putative flagellin protein, C-terminus YP_001413818.1 KEGG: nha:Nham_1336 hypothetical protein YP_001413819.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mca:MCA1512 TPR domain protein YP_001413820.1 KEGG: mmr:Mmar10_1954 flagellar basal-body protein FlbY YP_001413821.1 KEGG: chemotactic signal-response protein CheL YP_001413822.1 PFAM: flagellar P-ring protein; KEGG: nwi:Nwi_1111 flagellar P-ring protein precursor YP_001413823.1 regulator of the sigma 54 transcriptional activator FlbD; represses FlbD when the class II flagellar structure is absent and activates FlbD when the structure is present YP_001413824.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: mlo:mll0773 DnaK suppressor protein YP_001413825.1 PFAM: flagellar L-ring protein; KEGG: mmr:Mmar10_1949 flagellar L-ring protein YP_001413826.1 required for the assembly of the flagellar basal body P-ring; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum YP_001413827.1 makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella YP_001413828.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mag:amb3496 flagellar basal body rod protein YP_001413829.1 PFAM: flagellar basal body-associated protein FliL; KEGG: mag:amb3497 flagellar basal body-associated protein YP_001413830.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum YP_001413831.1 KEGG: mag:amb3499 hypothetical protein YP_001413832.1 KEGG: bja:bll5823 hypothetical protein YP_001413833.1 KEGG: mmr:Mmar10_1941 hypothetical protein YP_001413834.1 TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: mmr:Mmar10_1940 flagellar biosynthetic protein FliP YP_001413835.1 KEGG: rru:Rru_A2829 hypothetical protein YP_001413836.1 KEGG: rpb:RPB_3777 flagellar basal-body rod protein FlgB YP_001413837.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001413838.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: fliE; flagellar hook-basal body complex protein FliE; K02408 flagellar hook-basal body complex protein FliE YP_001413839.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: rpa:RPA3885 putative flagellar biosynthesis protein fliQ YP_001413840.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_001413841.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: rpc:RPC_1522 flagellar biosynthetic protein FlhB YP_001413842.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bmb:BruAb1_1044 sensory box histidine kinase/response regulator YP_001413843.1 PFAM: fatty acid desaturase; KEGG: abo:ABO_2546 fatty acid desaturase, putative YP_001413844.1 KEGG: mlo:mlr0030 recombination protein recA; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_001413845.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001413846.1 Converts isocitrate to alpha ketoglutarate YP_001413847.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rru:Rru_A0696 RNA methyltransferase TrmH, group 1 YP_001413848.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001413849.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: mag:amb2117 glutaredoxin-related protein YP_001413850.1 PFAM: BolA family protein; KEGG: mes:Meso_1276 BolA-like protein YP_001413851.1 TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: bja:bll5719 phosphoribosylformylglycinamidine synthetase II YP_001413852.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: mes:Meso_1279 phosphoribosylformylglycinamidine synthase I YP_001413853.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: mag:amb1540 phosphoribosylformylglycinamidine synthase YP_001413854.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; KEGG: rpe:RPE_1607 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001413855.1 PFAM: protein of unknown function DUF1476; KEGG: bbt:BBta_5410 hypothetical protein YP_001413856.1 PFAM: protein of unknown function DUF1457 YP_001413857.1 PFAM: regulatory protein TetR; KEGG: mbb:BCG_0369c hypothetical protein YP_001413858.1 PFAM: Pyrrolo-quinoline quinone; KEGG: swi:Swit_1054 quinoprotein glucose dehydrogenase YP_001413859.1 PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_1982 phosphoglycerate mutase family protein YP_001413860.1 PFAM: PilT protein domain protein; KEGG: atc:AGR_L_3577 hypothetical protein YP_001413861.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: atc:AGR_L_3576 hypothetical protein YP_001413862.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: mlo:mll0079 adenylosuccinate lyase YP_001413863.1 PFAM: Amidase; KEGG: rpa:RPA3959 putative amidase YP_001413864.1 PFAM: DNA repair protein RadC; KEGG: nha:Nham_0430 DNA repair protein RadC YP_001413865.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rle:RL2069 putative methionine aminopeptidase YP_001413866.1 PFAM: molybdopterin binding domain; KEGG: mlo:mll0144 hypothetical protein YP_001413867.1 KEGG: saz:Sama_2652 conserved hypothetical protein YP_001413868.1 proton-motive-force-driven choline transporter YP_001413869.1 TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sdn:Sden_0715 choline dehydrogenase YP_001413870.1 KEGG: mes:Meso_1118 hypothetical protein YP_001413872.1 KEGG: cch:Cag_1309 methylase YP_001413873.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bam:Bamb_2589 transcriptional regulator, Crp/Fnr family YP_001413874.1 PFAM: class II aldolase/adducin family protein; KEGG: pat:Patl_3366 class II aldolase/adducin-like YP_001413875.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pfl:PFL_1586 hypothetical protein YP_001413876.1 PFAM: major facilitator superfamily MFS_1; KEGG: ter:Tery_2105 sodium:galactoside symporter family protein YP_001413877.1 PFAM: alpha/beta hydrolase fold; KEGG: rpb:RPB_2134 alpha/beta hydrolase YP_001413878.1 KEGG: ter:Tery_2105 sodium:galactoside symporter family protein YP_001413879.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rha:RHA1_ro06259 probable amidohydrolase YP_001413880.1 PFAM: alpha/beta hydrolase fold; KEGG: bmb:BruAb1_1266 hydrolase, alpha/beta hydrolase fold family YP_001413881.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oxidoreductase, short-chain dehydrogenase/reductase family YP_001413883.1 PFAM: protein of unknown function DUF427; KEGG: rpb:RPB_3711 protein of unknown function DUF427 YP_001413884.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase YP_001413885.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001413886.1 PFAM: sulfatase; KEGG: cno:NT01CX_0300 probable sulfatase YP_001413888.1 PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro03350 probable hydrolase YP_001413889.1 TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; KEGG: rpc:RPC_3144 serine O-acetyltransferase YP_001413890.1 PFAM: FAD dependent oxidoreductase; KEGG: rsq:Rsph17025_0863 FAD dependent oxidoreductase YP_001413892.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mpt:Mpe_A0884 dehydrogenase YP_001413893.1 KEGG: mes:Meso_1728 hypothetical protein YP_001413894.1 KEGG: ret:RHE_CH02210 hypothetical protein YP_001413896.1 KEGG: bra:BRADO2943 conserved hypothetical protein; putative membrane protein; putative exported protein YP_001413897.1 KEGG: rpe:RPE_2309 hypothetical protein YP_001413898.1 PFAM: protein of unknown function DUF839; KEGG: mes:Meso_0954 twin-arginine translocation pathway signal YP_001413899.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: bacterial transferase family protein YP_001413900.1 PFAM: protein of unknown function DUF192; KEGG: rpd:RPD_2531 protein of unknown function DUF192 YP_001413901.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpd:RPD_3917 enoyl-CoA hydratase/isomerase YP_001413903.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mes:Meso_1471 peptidylprolyl isomerase, FKBP-type YP_001413904.1 KEGG: mmr:Mmar10_1074 hypothetical protein YP_001413905.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001413906.1 PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: bbt:BBta_5218 putative exported protein of unknown function YP_001413907.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: hne:HNE_2777 enoyl-CoA hydratase/isomerase family protein YP_001413908.1 PFAM: type IV pilus assembly PilZ; KEGG: mes:Meso_1725 type IV pilus assembly PilZ YP_001413909.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine YP_001413910.1 PFAM: protein of unknown function DUF1457; KEGG: mes:Meso_1724 hypothetical protein YP_001413911.1 KEGG: mmr:Mmar10_1077 hypothetical protein YP_001413912.1 KEGG: psa:PST_0360 hypothetical protein YP_001413913.1 KEGG: psa:PST_0360 hypothetical protein YP_001413914.1 KEGG: reh:H16_A3181 hypothetical protein YP_001413915.1 PFAM: small multidrug resistance protein; KEGG: ent:Ent638_0337 small multidrug resistance protein YP_001413916.1 KEGG: HfaB protein YP_001413917.1 PFAM: DSBA oxidoreductase; KEGG: rpb:RPB_3208 DsbA oxidoreductase YP_001413918.1 PFAM: Rhomboid family protein; KEGG: sme:SMc01001 hypothetical protein YP_001413919.1 KEGG: tcx:Tcr_2034 lipase-like YP_001413920.1 PFAM: regulatory protein TetR; KEGG: sen:SACE_0012 TetR-family transcriptional regulator YP_001413921.1 PFAM: Carotenoid oxygenase; KEGG: bbt:BBta_5477 putative carotenoid oxygenase YP_001413922.1 PFAM: regulatory protein TetR; KEGG: hch:HCH_02930 transcriptional regulator YP_001413923.1 PFAM: YCII-related; KEGG: sth:STH1648 hypothetical protein YP_001413924.1 KEGG: bja:bll0405 hypothetical protein YP_001413925.1 KEGG: mmr:Mmar10_1086 membrane protein-like protein YP_001413926.1 PFAM: CBS domain containing protein; KEGG: bra:BRADO2961 conserved hypothetical protein with 2 CBS domains YP_001413927.1 PFAM: Patatin; KEGG: rpd:RPD_3270 patatin YP_001413928.1 PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: rpa:RPA3390 phosphoribosyl-AMP cyclohydrolase YP_001413929.1 PFAM: GTP cyclohydrolase I; KEGG: mmr:Mmar10_2399 GTP cyclohydrolase I YP_001413930.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001413931.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: rpe:RPE_2347 nitrogen-fixing NifU domain protein YP_001413932.1 PFAM: protein of unknown function DUF37; KEGG: bov:BOV_1039 conserved hypothetical protein TIGR00278 YP_001413933.1 TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: hne:HNE_3196 threonyl-tRNA synthetase YP_001413934.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: aba:Acid345_4170 3-demethylubiquinone-9 3-methyltransferase YP_001413935.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mxa:MXAN_0676 Aha1 domain protien YP_001413936.1 PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: neu:NE0263 bacterial regulatory proteins, ArsR family YP_001413937.1 KEGG: bba:Bd1177 hypothetical protein YP_001413938.1 KEGG: hypothetical protein YP_001413939.1 PFAM: nitroreductase; KEGG: mmr:Mmar10_1061 nitroreductase YP_001413941.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sme:SMc00893 putative phosphoglycolate phosphatase YP_001413942.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: rpa:RPA0441 hypothetical protein YP_001413943.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: swi:Swit_1062 tetratricopeptide TPR_2 repeat protein YP_001413944.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: ret:RHE_CH02716 chromate transporter protein YP_001413945.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: reu:Reut_B5252 hypothetical protein YP_001413946.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rpa:RPA3271 putative D-isomer specific 2-hydroxyacid dehydrogenase YP_001413947.1 PFAM: HpcH/HpaI aldolase; KEGG: mlo:mlr0906 citrate lyase beta chain YP_001413948.1 PFAM: MaoC domain protein dehydratase; KEGG: mlo:mlr0905 probable monoamine oxidase regulatory protein YP_001413949.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: aav:Aave_0176 acyl-CoA dehydrogenase domain protein YP_001413950.1 PFAM: histidine triad (HIT) protein; KEGG: hch:HCH_04937 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase YP_001413951.1 PFAM: response regulator receiver; KEGG: eli:ELI_04825 chemotaxis protein CheYIV YP_001413952.1 PFAM: major facilitator superfamily MFS_1; KEGG: pae:PA4654 probable major facilitator superfamily (MFS) transporter YP_001413953.1 KEGG: rpb:RPB_2186 hypothetical protein YP_001413954.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: bsu:BG13011 similar to hypothetical proteins YP_001413955.1 PFAM: globin; KEGG: swi:Swit_5297 sec-independent protein translocase protein TatC YP_001413956.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpd:RPD_1436 ATPase, E1-E2 type YP_001413957.1 PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpa:RPA1450 putative pyruvate carboxylase YP_001413958.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: nar:Saro_3603 NADH:flavin oxidoreductase/NADH oxidase YP_001413959.1 PFAM: Glutathione S-transferase domain; KEGG: abo:ABO_2425 glutathione S-transferase YP_001413960.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_1823 E-cinnamoyl-CoA:R-phenyllactate CoA transferase, large subunit YP_001413961.1 PFAM: DoxX family protein; KEGG: bxe:Bxe_A1140 hypothetical protein YP_001413962.1 KEGG: hne:HNE_2068 hypothetical protein YP_001413963.1 TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; KEGG: rso:RSc2252 probable beta-ketoadipyl CoA thiolase protein YP_001413964.1 PFAM: EAL domain protein; KEGG: mpt:Mpe_A0214 signal transduction protein YP_001413965.1 PFAM: NUDIX hydrolase; KEGG: bbt:BBta_5001 hypothetical protein YP_001413966.1 PFAM: ATP-NAD/AcoX kinase; KEGG: mag:amb0162 predicted sugar kinase YP_001413967.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: swi:Swit_1359 CutA1 divalent ion tolerance protein YP_001413968.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: bms:BR0958 molybdenum cofactor biosynthesis protein A YP_001413969.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: pde:Pden_4386 glycerol kinase YP_001413970.1 PFAM: FAD linked oxidase domain protein; KEGG: rpc:RPC_2091 FAD linked oxidase-like YP_001413972.1 PFAM: class II aldolase/adducin family protein; KEGG: hne:HNE_2063 aldolase, class II YP_001413973.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: acr:Acry_1968 carbon-monoxide dehydrogenase (acceptor) YP_001413974.1 SMART: helix-turn-helix- domain containing protein AraC type; KEGG: hne:HNE_1702 transcriptional regulator, AraC family YP_001413975.1 PFAM: putative RNA methylase; UbiE/COQ5 methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: sal:Sala_2559 methyltransferase type 11 YP_001413976.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0428 major facilitator superfamily (MFS) sugar transporter YP_001413977.1 PFAM: regulatory protein TetR; KEGG: bha:BH0580 transcriptional regulator (TetR/AcrR family) YP_001413979.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pat:Patl_2956 short-chain dehydrogenase/reductase SDR YP_001413981.1 KEGG: rpa:RPA3309 hypothetical protein YP_001413982.1 PFAM: glutamine synthetase catalytic region; KEGG: pau:PA14_72850 putative glutamine synthetase YP_001413983.1 PFAM: aminotransferase class-III; KEGG: glutamate-1-semialdehyde 2,1-aminomutase YP_001413985.1 KEGG: rpc:RPC_3111 hypothetical protein YP_001413986.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mag:amb3149 rRNA methylase YP_001413987.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001413988.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: bov:BOV_1211 preprotein translocase, SecE subunit YP_001413989.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides Ouzounis Woese) domain protein; KEGG: rpd:RPD_3202 transcription termination/antitermination factor NusG YP_001413990.1 binds directly to 23S ribosomal RNA YP_001413991.1 PFAM: ribosomal protein L1; KEGG: mes:Meso_1822 ribosomal protein L1 YP_001413992.1 PFAM: ribosomal protein L10; KEGG: bov:BOV_1207 ribosomal protein L10 YP_001413993.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: mes:Meso_1820 ribosomal protein L7/L12 YP_001413994.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: bbt:BBta_5081 RNA polymerase, beta subunit YP_001413995.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001413996.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001413997.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001413998.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: rru:Rru_A2691 translation elongation factor G YP_001413999.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001414000.1 PFAM: ribosomal protein S10; KEGG: mmr:Mmar10_1796 ribosomal protein S10 YP_001414001.1 PFAM: ribosomal protein L3; KEGG: rde:RD1_1399 ribosomal protein L3 YP_001414002.1 PFAM: ribosomal protein L4/L1e; KEGG: nwi:Nwi_1365 50S ribosomal protein L4 YP_001414003.1 PFAM: Ribosomal protein L25/L23; KEGG: rpd:RPD_3182 ribosomal protein L25/L23 YP_001414004.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001414005.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: rle:RL1778 putative 30S ribosomal protein S19 YP_001414006.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: mes:Meso_1673 ribosomal protein L22 YP_001414007.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; KEGG: mes:Meso_1672 ribosomal protein S3 YP_001414008.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001414009.1 PFAM: ribosomal protein L29; KEGG: rle:RL1782 putative 50S ribosomal protein L29 YP_001414010.1 PFAM: ribosomal protein S17; KEGG: atu:Atu1937 30S ribosomal protein S17 YP_001414011.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001414012.1 TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides Ouzounis Woese) domain protein; KEGG: rru:Rru_A2677 ribosomal protein L24 YP_001414013.1 PFAM: ribosomal protein L5; KEGG: bhe:BH10390 50S ribosomal protein L5 YP_001414014.1 PFAM: ribosomal protein S14; KEGG: hne:HNE_2838 ribosomal protein S14 YP_001414015.1 PFAM: ribosomal protein S8; KEGG: bqu:BQ08090 30S ribosomal protein S8 YP_001414016.1 PFAM: ribosomal protein L6; KEGG: mes:Meso_1663 ribosomal protein L6 YP_001414017.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: mes:Meso_1662 ribosomal protein L18 YP_001414018.1 TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: nwi:Nwi_1381 30S ribosomal protein S5 YP_001414019.1 PFAM: ribosomal protein L30; KEGG: sme:SMc01291 50S ribosomal protein L30 YP_001414020.1 PFAM: ribosomal protein L15; KEGG: swi:Swit_1334 ribosomal protein L15 YP_001414021.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: rpa:RPA3230 secretion protein SecY YP_001414022.1 PFAM: adenylate kinase; KEGG: rpd:RPD_3163 adenylate kinases YP_001414023.1 PFAM: ribosomal protein S13; KEGG: atc:AGR_C_3520 30S ribosomal protein S13 YP_001414024.1 PFAM: ribosomal protein S11; KEGG: mmr:Mmar10_1772 ribosomal protein S11 YP_001414025.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001414026.1 PFAM: ribosomal protein L17; KEGG: 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 YP_001414027.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mag:amb3481 trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain YP_001414028.1 TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: mmr:Mmar10_0048 bacterioferritin YP_001414030.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rru:Rru_A2660 AAA ATPase, central region YP_001414031.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: mlo:mlr0333 crcB protein YP_001414032.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rru:Rru_A2659 pseudouridine synthase, RluD YP_001414033.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rde:RD1_1442 hydrolase, putative YP_001414034.1 PFAM: AsmA family protein; KEGG: pnu:Pnuc_0711 AsmA family protein YP_001414035.1 PFAM: ATP12 ATPase; KEGG: rsp:RSP_1746 hypothetical protein YP_001414036.1 PFAM: carboxyl transferase; KEGG: mlo:mll0348 propionyl-CoA carboxylase YP_001414037.1 PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mlo:mll0871 propionyl-CoA carboxylase alpha chain precursor YP_001414038.1 KEGG: mba:Mbar_A3298 hypothetical protein YP_001414039.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: bja:blr5257 lipoate biosynthesis protein B YP_001414040.1 PFAM: surface presentation of antigens (SPOA) protein; KEGG: mmr:Mmar10_1744 surface presentation of antigens (SpoA) protein YP_001414041.1 TIGRFAM: siroheme synthase; KEGG: acr:Acry_2803 siroheme synthase YP_001414042.1 catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite YP_001414043.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: rle:RL2551 putative transmembrane cationic transporter YP_001414044.1 PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: mmr:Mmar10_1741 Kelch repeat protein YP_001414045.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bbt:BBta_6658 isovaleryl-CoA dehydrogenase YP_001414046.1 KEGG: eli:ELI_09820 hypothetical protein YP_001414047.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: mem:Memar_0499 phosphoesterase, PA-phosphatase related YP_001414048.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: azo:azo0393 probable acyl-CoA thiolase YP_001414049.1 KEGG: mmr:Mmar10_1416 hypothetical protein YP_001414050.1 PFAM: regulatory protein TetR; KEGG: bra:BRADO3678 putative transcriptional regulatory protein, TetR family YP_001414051.1 PFAM: carboxyl transferase; KEGG: mmr:Mmar10_1734 propionyl-CoA carboxylase YP_001414053.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: gme:Gmet_3292 biotin/lipoyl attachment:carbamoyl-phosphate synthase L chain, ATP-binding:carbamoyl-phosphate synthetase large chain-like:biotin carboxylase-like YP_001414054.1 PFAM: conserved hypothetical protein; KEGG: mes:Meso_1368 uncharacterised conserved protein UCP032025 YP_001414055.1 PFAM: peptidase S15; KEGG: mpt:Mpe_A2886 hypothetical protein YP_001414056.1 TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain; PFAM: Pantoate-beta-alanine ligase; KEGG: rru:Rru_A3320 cytidyltransferase-related YP_001414057.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: hch:HCH_06318 alcohol dehydrogenase, class IV YP_001414058.1 PFAM: aldehyde dehydrogenase; KEGG: acr:Acry_2389 aldehyde dehydrogenase YP_001414059.1 PFAM: glutamine synthetase catalytic region; KEGG: mlo:mll3074 glutamine synthetase YP_001414060.1 PFAM: ATPase MipZ; KEGG: rsp:RSP_1042 chromosome partitioning protein YP_001414061.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Sporulation domain protein; KEGG: atc:AGR_C_2773 penicillin-binding protein dacf precursor (dacF) YP_001414062.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_001414063.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: bra:BRADO4545 ATP-dependent specificity subunit of ClpA-ClpP serine protease YP_001414064.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_0439 glyoxalase/bleomycin resistance protein/dioxygenase YP_001414065.1 PFAM: NHL repeat containing protein; KEGG: rpa:RPA4432 NHL repeat YP_001414066.1 PFAM: histidine triad (HIT) protein; KEGG: atc:AGR_C_2530 probable hit family protein YP_001414067.1 PFAM: protein of unknown function DUF482; KEGG: sme:SMc02105 hypothetical protein YP_001414068.1 PFAM: Endoribonuclease L-PSP; KEGG: rsq:Rsph17025_0250 endoribonuclease L-PSP YP_001414069.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: lpn:lpg0005 peptidylarginine deiminase YP_001414070.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mxa:MXAN_5366 response regulator/GGDEF domain protein YP_001414071.1 PFAM: protein of unknown function DUF323; KEGG: sde:Sde_3987 RecF protein YP_001414072.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rru:Rru_A1815 glycolate reductase YP_001414073.1 PFAM: Domain of unknown function DUF1849; KEGG: sme:SMc02102 hypothetical protein YP_001414074.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001414076.1 PFAM: ROK family protein; KEGG: sfu:Sfum_0489 ROK family protein YP_001414077.1 KEGG: mlo:mlr0864 hypothetical protein YP_001414078.1 KEGG: rsh:Rsph17029_2068 hypothetical protein YP_001414079.1 PFAM: response regulator receiver; KEGG: polar differentiation response regulator YP_001414080.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rpb:RPB_2413 diguanylate cyclase YP_001414081.1 PFAM: ribosomal protein L33; KEGG: mmr:Mmar10_1278 ribosomal protein L33 YP_001414082.1 KEGG: nar:Saro_0897 hypothetical protein YP_001414083.1 KEGG: nar:Saro_0897 hypothetical protein YP_001414084.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sth:STH2403 threonine aldolase YP_001414085.1 PFAM: regulatory protein TetR; KEGG: hne:HNE_2415 transcriptional regulator, TetR family YP_001414086.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bbt:BBta_4128 putative transcriptional regulator, AsnC/Lrp family YP_001414087.1 KEGG: rle:pRL120290 hypothetical protein YP_001414088.1 PFAM: Glutathione S-transferase domain; KEGG: bja:blr6664 glutathione S-transferase YP_001414089.1 PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMc01368 putative transport transmembrane protein YP_001414091.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_2625 NUDIX hydrolase YP_001414092.1 PFAM: NUDIX hydrolase; KEGG: pat:Patl_2625 NUDIX hydrolase YP_001414093.1 PFAM: protein of unknown function DUF983; KEGG: mes:Meso_1352 protein of unknown function DUF983 YP_001414094.1 TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; KEGG: bme:BMEII0665 ribonuclease R YP_001414095.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001414097.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: mag:amb0681 predicted Rossmann fold nucleotide-binding protein YP_001414098.1 PFAM: protein of unknown function DUF205; KEGG: rpa:RPA3119 hypothetical protein YP_001414099.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: rpa:RPA3118 dihydroorotase YP_001414100.1 TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: bra:BRADO4502 aspartate carbamoyltransferase (catalytic subunit) YP_001414101.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ilo:IL1542 acyl-CoA dehydrogenase YP_001414102.1 KEGG: syx:SynWH7803_0896 hypothetical protein YP_001414103.1 KEGG: pna:Pnap_2858 insertion element protein YP_001414104.1 PFAM: Auxin Efflux Carrier; KEGG: rpe:RPE_3369 auxin efflux carrier YP_001414105.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: mag:amb1588 putative Holliday junction resolvase YP_001414106.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: hne:HNE_2299 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_001414107.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: bme:BMEII0675 glutamyl-tRNA(gln) amidotransferase subunit A YP_001414108.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB region; GatB central domain protein; KEGG: mes:Meso_1720 glutamyl-tRNA(Gln) amidotransferase, B subunit YP_001414109.1 KEGG: rme:Rmet_3071 putative histone H1 protein YP_001414110.1 PFAM: Glutathione S-transferase domain; KEGG: sme:SMc02390 putative glutathione S-transferase protein YP_001414112.1 PFAM: Glutathione S-transferase domain; KEGG: bur:Bcep18194_A5556 glutathione S-transferase-like YP_001414113.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: eli:ELI_14115 hypothetical protein YP_001414114.1 TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; KEGG: bme:BMEI0166 acyl-CoA thioesterase II YP_001414115.1 PFAM: regulatory protein TetR; Resolvase helix-turn-helix domain protein; KEGG: msm:MSMEG_1500 TetR family protein transcriptional regulatory protein YP_001414116.1 PFAM: alpha/beta hydrolase fold; KEGG: mkm:Mkms_3008 alpha/beta hydrolase fold YP_001414117.1 KEGG: eli:ELI_05180 sugar transporter YP_001414118.1 PFAM: protein of unknown function UPF0126; KEGG: pca:Pcar_0604 hypothetical protein YP_001414119.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bra:BRADO5370 conserved hypothetical protein; putative membrane protein; putative small-conductance mechanosensitive channel YP_001414120.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_1678 methyltransferase type 12 YP_001414121.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_1677 methyltransferase type 11 YP_001414122.1 KEGG: sde:Sde_3519 hypothetical protein YP_001414123.1 PFAM: Na+/Picotransporter; KEGG: hne:HNE_1902 Na/Pi cotransporter family protein YP_001414124.1 PFAM: alpha/beta hydrolase fold; KEGG: hypothetical protein YP_001414125.1 PFAM: Lytic transglycosylase catalytic; KEGG: mmr:Mmar10_1584 lytic transglycosylase, catalytic YP_001414126.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: bja:bll5072 dihydrodipicolinate synthase YP_001414127.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: rpc:RPC_2631 SsrA-binding protein YP_001414128.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: bja:blr5068 hypothetical protein YP_001414129.1 PFAM: protein of unknown function DUF88; KEGG: rru:Rru_A1859 protein of unknown function DUF88 YP_001414130.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; KEGG: rru:Rru_A1858 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK YP_001414131.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: rpe:RPE_3027 DNA-directed RNA polymerase, omega subunit YP_001414132.1 KEGG: mag:amb2253 guanosine polyphosphate pyrophosphohydrolase/synthetase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_001414133.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001414134.1 KEGG: mes:Meso_0947 hypothetical protein YP_001414135.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_001414136.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: sme:SMc02654 probable holo-acyl-carrier protein synthase YP_001414137.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: nha:Nham_2252 peptidase S26A, signal peptidase I YP_001414138.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: rru:Rru_A1852 ribonuclease III YP_001414139.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; Miro domain protein; KEGG: sme:SMc02651 probable GTP-binding protein YP_001414140.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: mmr:Mmar10_1568 DNA repair protein RecO YP_001414141.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001414142.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: rpe:RPE_1698 excinuclease ABC, C subunit domain protein YP_001414144.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mmr:Mmar10_1562 TRAP dicarboxylate transporter, DctM subunit YP_001414145.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mgm:Mmc1_1612 tripartite ATP-independent periplasmic transporter, DctQ component YP_001414146.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hne:HNE_0892 bacterial extracellular solute-binding protein, family 7 YP_001414147.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_001414148.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: mmr:Mmar10_1558 TrkA-C domain protein YP_001414149.1 PFAM: RDD domain containing protein; KEGG: nwi:Nwi_1910 hypothetical protein YP_001414150.1 PFAM: OmpA/MotB domain protein; KEGG: chemotaxis MotB protein; K02557 chemotaxis MotB protein YP_001414151.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: rru:Rru_A1842 MotA, chemotaxis (motility protein A YP_001414152.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pen:PSEEN3104 P-hydroxyphenylacetate hydroxylase C1:reductase component YP_001414153.1 PFAM: regulatory protein MarR; KEGG: mlo:mlr8230 transcriptional regulator YP_001414154.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1848 MotA/TolQ/ExbB proton channel YP_001414155.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hha:Hhal_0453 biopolymer transport protein ExbD/TolR YP_001414156.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hha:Hhal_0452 biopolymer transport protein ExbD/TolR YP_001414157.1 KEGG: rso:RSc1963 probable tonb transmembrane protein YP_001414158.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpa:RPA1973 3-hydroxyisobutyrate dehydrogenase YP_001414159.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mag:amb1101 diaminopimelate decarboxylase YP_001414160.1 PFAM: regulatory protein TetR; KEGG: sco:SCO4898 TetR-family transcriptional regulator YP_001414161.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001414162.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpb:RPB_2120 acyl-CoA dehydrogenase-like YP_001414163.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xtr:548942 hypothetical protein LOC548942 Pfam: ECH YP_001414164.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: mag:amb3587 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase YP_001414165.1 PFAM: regulatory protein MarR; KEGG: bbt:BBta_4653 putative transcriptional regulatory protein, MarR family YP_001414166.1 PFAM: protein of unknown function DUF1295; KEGG: sal:Sala_1034 protein of unknown function DUF1295 YP_001414167.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mes:Meso_1133 twin-arginine translocation pathway signal YP_001414168.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sco:SCO1419 putative phosphodiesterase YP_001414169.1 catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine YP_001414170.1 KEGG: mag:amb2560 hypothetical protein YP_001414171.1 PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mlr1025 transcriptional regulatory protein, nodulation competitiveness determinant YP_001414172.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001414173.1 PFAM: ATP-cone domain protein; KEGG: mlo:mlr8403 ATP-cone domain protein YP_001414174.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: mag:amb2341 riboflavin biosynthesis protein RibD YP_001414175.1 TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: jan:Jann_3417 riboflavin synthase, alpha subunit YP_001414176.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: mmr:Mmar10_1533 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001414177.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; KEGG: ret:RHE_CH01525 riboflavin synthase, beta chain protein YP_001414178.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rpc:RPC_2664 NusB antitermination factor YP_001414179.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: rpc:RPC_2665 thiamine-monophosphate kinase YP_001414180.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_001414181.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: hch:HCH_06854 Kef-type K+ transport system, predicted NAD-binding component YP_001414182.1 PFAM: UspA domain protein; KEGG: pau:PA14_56590 putative universal stress protein YP_001414183.1 PFAM: SmpA/OmlA domain protein; KEGG: nwi:Nwi_1403 SmpA/OmlA YP_001414184.1 PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mag:amb2350 CBP3 protein, mitochondrial precursor YP_001414185.1 KEGG: rru:Rru_A1664 conserved hypothetical cytosolic protein YP_001414186.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: nha:Nham_1585 fatty acid/phospholipid synthesis protein PlsX YP_001414187.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: nha:Nham_1586 3-oxoacyl-(acyl-carrier-protein) synthase III YP_001414188.1 TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: rru:Rru_A1668 integration host factor, alpha subunit YP_001414189.1 PFAM: regulatory protein MerR; KEGG: mes:Meso_1148 transcriptional regulator, MerR family YP_001414190.1 KEGG: nha:Nham_2461 hypothetical protein YP_001414191.1 PFAM: cytochrome oxidase assembly; KEGG: neu:NE0431 cytochrome oxidase assembly YP_001414192.1 KEGG: rrs:RoseRS_0296 hypothetical protein YP_001414193.1 PFAM: Appr-1-p processing domain protein; KEGG: aav:Aave_0161 Appr-1-p processing domain protein YP_001414194.1 PFAM: Glutathione S-transferase domain; KEGG: mxa:MXAN_4035 glutathione S-transferase family protein YP_001414195.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: bja:bll5290 hypothetical protein YP_001414196.1 PFAM: regulatory protein ArsR; KEGG: bja:bll5291 transcriptional regulatory protein YP_001414197.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_001414198.1 PFAM: CoA-binding domain protein; KEGG: swi:Swit_2358 CoA-binding domain protein YP_001414199.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbt:BBta_4594 putative enoyl-CoA hydratase YP_001414200.1 PFAM: thioesterase superfamily protein; KEGG: bov:BOV_0788 hypothetical protein YP_001414201.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001414202.1 PFAM: ribosomal protein S9; KEGG: mlo:mll8456 30S ribosomal protein S9 YP_001414203.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis YP_001414204.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: rru:Rru_A3577 protein of unknown function DUF6, transmembrane YP_001414205.1 PFAM: plasmid maintenance system killer; KEGG: rpc:RPC_4369 plasmid maintenance system killer YP_001414206.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_4370 plasmid maintenance system antidote protein, XRE family YP_001414207.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: acr:Acry_1301 poly(R)-hydroxyalkanoic acid synthase, class I YP_001414208.1 KEGG: cel:ZK84.1 ZK84.1 YP_001414209.1 PFAM: aminotransferase class I and II; KEGG: sme:SMc00294 probable aminotransferase protein YP_001414210.1 PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gbe:GbCGDNIH1_1434 putative aminotransferase AatC YP_001414211.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001414212.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: mag:amb3730 single-stranded DNA-specific exonuclease YP_001414214.1 KEGG: rpd:RPD_1872 sensor histidine kinase YP_001414215.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: hha:Hhal_0152 glyoxalase/bleomycin resistance protein/dioxygenase YP_001414216.1 PFAM: Silent information regulator protein Sir2; KEGG: bbt:BBta_4037 putative transciptional regulatory Sir2-family protein YP_001414217.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_0087 short-chain dehydrogenase/reductase SDR YP_001414218.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mlo:mlr7593 glycosyl hydrolase YP_001414219.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: rpa:RPA3797 hypothetical protein YP_001414220.1 KEGG: rsq:Rsph17025_0331 protein of unknown function DUF182 YP_001414221.1 PFAM: protein of unknown function DUF182; KEGG: rpe:RPE_1659 protein of unknown function DUF182 YP_001414222.1 PFAM: VWA containing CoxE family protein; KEGG: mes:Meso_1291 VWA containing CoxE-like YP_001414223.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rru:Rru_A0968 ATPase associated with various cellular activities, AAA_5 YP_001414224.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mlo:mll1127 carbon monoxide dehydrogenase chain C YP_001414225.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mes:Meso_0059 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding YP_001414226.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mes:Meso_0058 (2Fe-2S)-binding YP_001414227.1 PFAM: carbon monoxide dehydrogenase subunit G; KEGG: acr:Acry_0470 carbon monoxide dehydrogenase subunit G YP_001414228.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport YP_001414230.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rba:RB1430 putative NADH-ubiquinone oxidoreductase subunit YP_001414231.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_001414232.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rru:Rru_A1636 NADH-ubiquinone oxidoreductase, chain 4L YP_001414233.1 PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: rru:Rru_A1637 Na+/H+ antiporter MnhB subunit-related protein YP_001414234.1 KEGG: rru:Rru_A1638 putative multicomponent Na+-H+ antiporter subunit A YP_001414235.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: mmr:Mmar10_0886 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_001414236.1 PFAM: multiple resistance and pH regulation protein F; KEGG: rru:Rru_A1640 multiple resistance and pH regulation protein F YP_001414237.1 PFAM: cation antiporter; KEGG: mmr:Mmar10_0884 cation antiporter YP_001414238.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: rpe:RPE_2918 cold-shock DNA-binding domain protein YP_001414239.1 PFAM: thioesterase superfamily protein; KEGG: hne:HNE_1964 thioesterase family protein YP_001414240.1 PFAM: ETC complex I subunit conserved region; KEGG: NADH-ubiquinone oxidoreductase-related protein YP_001414241.1 TIGRFAM: DNA ligase D; DNA ligase D 3'-phosphoesterase domain; DNA polymerase LigD polymerase domain; DNA polymerase LigD ligase region; PFAM: DNA primase small subunit; ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: sme:SMc03959 hypothetical protein YP_001414242.1 TIGRFAM: Ku family containing protein; PFAM: Ku domain protein; KEGG: swi:Swit_3981 Ku family containing protein YP_001414243.1 PFAM: transport-associated; KEGG: sme:SMb20225 probable osmotically inducible sensory protein YP_001414244.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: noc:Noc_2705 Sel1-like repeat protein YP_001414245.1 TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: bur:Bcep18194_B3008 FAD-linked oxidoreductase YP_001414246.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sil:SPO2542 biotin/lipoate binding domain protein YP_001414247.1 TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: mag:amb1294 cystathionine beta-lyase/cystathionine gamma-synthase YP_001414248.1 SMART: extracellular solute-binding protein family 3; KEGG: bbt:BBta_3923 putative amino-acid ABC transporter, substrate-binding protein YP_001414249.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A1003 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine YP_001414250.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pst:PSPTO_1257 amino acid ABC transporter, permease protein YP_001414251.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_1116 ABC transporter related YP_001414252.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bov:BOV_1021 acetyltransferase, GNAT family YP_001414253.1 PFAM: Rhodanese domain protein; KEGG: rsq:Rsph17025_0122 rhodanese domain protein YP_001414254.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rpa:RPA2568 O-acetylserine (thiol) lyase YP_001414255.1 PFAM: NUDIX hydrolase; KEGG: ent:Ent638_3447 ADP-ribose diphosphatase YP_001414256.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rle:RL1982 putative cyclopropane-fatty-acyl-phospholipid synthase YP_001414257.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sme:SMc01566 probable ATP-dependent DNA helicase protein YP_001414258.1 PFAM: polysaccharide deacetylase; KEGG: bja:bll1083 hypothetical protein YP_001414259.1 KEGG: nha:Nham_2462 hypothetical protein YP_001414260.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: atc:AGR_L_2615 hypothetical protein YP_001414261.1 KEGG: eli:ELI_02565 hypothetical protein YP_001414262.1 KEGG: nha:Nham_1520 transcription factor jumonji/aspartyl beta-hydroxylase YP_001414263.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: mag:amb1450 succinoglycan biosynthesis transport protein ExoP YP_001414264.1 PFAM: polysaccharide export protein; KEGG: rpd:RPD_4418 polysaccharide export protein YP_001414265.1 PFAM: glycosyl transferase group 1; KEGG: bra:BRADO4230 putative glycosyl transferase, group 1 YP_001414266.1 KEGG: atc:AGR_C_2278 hypothetical protein YP_001414267.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; KEGG: rru:Rru_A1799 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_001414268.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A1798 type I secretion outer membrane protein, TolC YP_001414269.1 KEGG: rpc:RPC_2569 hypothetical protein YP_001414270.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001414272.1 KEGG: rsq:Rsph17025_1177 hypothetical protein YP_001414273.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: alcohol dehydrogenase class III YP_001414274.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001414275.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfu:Sfum_1484 Sel1 domain protein repeat-containing protein YP_001414276.1 PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rpa:RPA4824 hypothetical protein YP_001414277.1 PFAM: conserved hypothetical protein; MlrC domain protein; KEGG: rpa:RPA1213 hypothetical protein YP_001414278.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: ppf:Pput_3744 antibiotic biosynthesis monooxygenase YP_001414279.1 PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: bbr:BB2415 putative AraC-family transcriptional regulator YP_001414280.1 PFAM: penicillin-binding protein transpeptidase; KEGG: mca:MCA2220 beta-lactamase YP_001414281.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: rle:RL1541 hypothetical protein YP_001414282.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rpa:RPA2861 exodeoxyribonuclease III YP_001414283.1 PFAM: protein of unknown function DUF1457 YP_001414284.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rpa:RPA2856 protein of unknown function, HesB/YadR/YfhF YP_001414285.1 TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rru:Rru_A1780 deoxyguanosinetriphosphate triphosphohydrolase YP_001414286.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001414287.1 PFAM: Sporulation domain protein; KEGG: mmr:Mmar10_1913 sporulation domain protein YP_001414288.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: glycosyl hydrolase, family 3 YP_001414289.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: nwi:Nwi_1804 chromosome segregation and condensation protein ScpA YP_001414290.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: bbt:BBta_4418 hypothetical protein YP_001414291.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: swi:Swit_3930 twin-arginine translocation protein, TatA/E family subunit YP_001414292.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: rsh:Rsph17029_1200 twin-arginine translocation protein, TatB subunit YP_001414293.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: rpc:RPC_2515 sec-independent protein translocase TatC YP_001414294.1 TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); seryl-tRNA synthetase class IIa; KEGG: sme:SMc02064 seryl-tRNA synthetase YP_001414295.1 TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: mmr:Mmar10_1904 stationary-phase survival protein SurE YP_001414296.1 TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: mag:amb2519 protein-L-isoaspartate carboxylmethyltransferase YP_001414297.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: mag:amb2518 membrane protein related to metalloendopeptidase YP_001414298.1 PFAM: protein of unknown function DUF815; KEGG: mes:Meso_1799 protein of unknown function DUF815 YP_001414299.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rpd:RPD_2778 preprotein translocase, YajC subunit YP_001414300.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_001414301.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: nwi:Nwi_1768 SecD/SecF/SecDF export membrane protein YP_001414302.1 PFAM: protein of unknown function DUF498; KEGG: rru:Rru_A1762 protein of unknown function DUF598 YP_001414303.1 KEGG: mmr:Mmar10_1897 hypothetical protein YP_001414304.1 KEGG: atc:AGR_C_2873 putative phytoene synthase YP_001414305.1 TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A; KEGG: mlo:mlr1064 glucose-inhibited division protein YP_001414306.1 PFAM: Amidase; KEGG: hne:HNE_1602 putative 6-aminohexanoate-cyclic-dimer hydrolase YP_001414307.1 PFAM: Amidase; KEGG: mxa:MXAN_2852 amidase family protein YP_001414308.1 PFAM: Alkaline phosphatase; KEGG: aba:Acid345_3950 phosphodiesterase/alkaline phosphatase D YP_001414309.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: bms:BR1104 excinuclease ABC, A subunit YP_001414310.1 KEGG: rpc:RPC_2516 hypothetical protein YP_001414311.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001414312.1 KEGG: pen:PSEEN2349 hypothetical protein YP_001414313.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: rpe:RPE_2764 DNA gyrase, A subunit YP_001414314.1 TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: bja:bll4693 phosphopantetheine adenylyltransferase YP_001414315.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: swi:Swit_3531 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_001414316.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mes:Meso_1404 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_001414317.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001414318.1 TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; KEGG: pde:Pden_1891 queuine tRNA-ribosyltransferase YP_001414319.1 PFAM: Pyrrolo-quinoline quinone; KEGG: rsq:Rsph17025_3339 GntR domain protein YP_001414320.1 KEGG: eli:ELI_03550 hypothetical protein YP_001414321.1 PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bbt:BBta_3548 hypothetical protein YP_001414322.1 KEGG: bmb:BruAb2_0611 hypothetical Rnk transcriptional regulator YP_001414323.1 KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor YP_001414324.1 PFAM: SH3 type 3 domain protein; SMART: helix-turn-helix domain protein; SH3 domain protein; KEGG: bur:Bcep18194_A5114 transcriptional regulator, XRE family YP_001414325.1 PFAM: carbonic anhydrase; KEGG: ret:RHE_CH04103 carbonic anhydrase protein YP_001414327.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_001414328.1 TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein; KEGG: mag:amb2212 NodQ bifunctional enzyme YP_001414329.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: mlo:mlr5697 UDP-galactose 4-epimerase YP_001414330.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: rpd:RPD_2617 nucleotidyl transferase YP_001414331.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: sal:Sala_1366 glucosamine--fructose-6-phosphate aminotransferase, isomerizing YP_001414332.1 PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28481 hypothetical protein YP_001414333.1 PFAM: protein of unknown function DUF35; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: hypothetical protein YP_001414334.1 KEGG: thiolase family protein YP_001414335.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: mgm:Mmc1_0390 membrane bound O-acyl transferase, MBOAT family protein YP_001414336.1 KEGG: mgm:Mmc1_0389 hypothetical protein YP_001414337.1 PFAM: protein of unknown function DUF1457 YP_001414338.1 KEGG: swi:Swit_0600 hypothetical protein YP_001414339.1 KEGG: rpb:RPB_3603 hypothetical protein YP_001414340.1 PFAM: aminoglycoside phosphotransferase; KEGG: bja:blr2944 hypothetical protein YP_001414341.1 KEGG: hne:HNE_2392 hypothetical protein YP_001414342.1 PFAM: protein of unknown function DUF502; KEGG: mlo:mll0832 hypothetical protein YP_001414343.1 catalyzes branch migration in Holliday junction intermediates YP_001414344.1 PFAM: protein of unknown function DUF339; KEGG: rpb:RPB_2851 protein of unknown function DUF339 YP_001414345.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bbt:BBta_4157 transcription repair coupling factor YP_001414346.1 PFAM: DSBA oxidoreductase; KEGG: mlo:mlr0515 similar to FrnE protein YP_001414347.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_1147 short-chain dehydrogenase/reductase SDR YP_001414349.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: hha:Hhal_0554 sodium/proline symporter YP_001414351.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPO2069 benzoate-coenzyme A ligase, putative YP_001414352.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hypothetical protein YP_001414353.1 PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_1982 phosphoglycerate mutase family protein YP_001414354.1 PFAM: AMP-dependent synthetase and ligase; KEGG: sal:Sala_1007 AMP-dependent synthetase and ligase YP_001414355.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: sal:Sala_1009 2-nitropropane dioxygenase, NPD YP_001414356.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation YP_001414357.1 PFAM: extracellular solute-binding protein family 5; KEGG: nha:Nham_2050 extracellular solute-binding protein, family 5 YP_001414358.1 PFAM: Invasion associated locus B family protein; KEGG: rpa:RPA0830 hypothetical protein YP_001414359.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: sde:Sde_3507 acetyltransferase (isoleucine patch superfamily)-like YP_001414360.1 TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: rpc:RPC_2615 hemimethylated DNA-binding region YP_001414361.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pat:Patl_1928 NADH:flavin oxidoreductase/NADH oxidase YP_001414362.1 PFAM: HpcH/HpaI aldolase; KEGG: rrs:RoseRS_4173 HpcH/HpaI aldolase YP_001414363.1 PFAM: major facilitator superfamily MFS_1; KEGG: sat:SYN_00428 oxalate/formate antiporter YP_001414364.1 KEGG: swi:Swit_1601 transferase hexapeptide repeat containing protein YP_001414365.1 PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr1018 hypothetical protein YP_001414366.1 PFAM: Glutathione S-transferase domain; KEGG: rpa:RPA1576 putative glutathione S-transferase YP_001414368.1 PFAM: thioesterase superfamily protein; KEGG: sen:SACE_1886 phenylacetic acid degradation-related protein YP_001414369.1 PFAM: protein of unknown function DUF72; KEGG: mes:Meso_3462 protein of unknown function DUF72 YP_001414371.1 PFAM: MmgE/PrpD family protein; KEGG: hne:HNE_1103 MmgE/PrpD family protein YP_001414372.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: mag:amb2452 lipoprotein YP_001414373.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rru:Rru_A1704 serine-type D-Ala-D-Ala carboxypeptidase YP_001414374.1 PFAM: thymidylate kinase; KEGG: mag:amb2450 thymidylate kinase YP_001414375.1 PFAM: peptidase M23B; KEGG: rru:Rru_A0504 peptidase M23B YP_001414376.1 KEGG: mag:amb2449 ATPase involved in DNA replication YP_001414377.1 TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: mes:Meso_1583 methionyl-tRNA synthetase YP_001414378.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: mes:Meso_1584 hydrolase, TatD family YP_001414379.1 KEGG: mmr:Mmar10_1451 beta-lactamase-like protein YP_001414381.1 KEGG: bce:BC4527 hypothetical membrane spanning protein YP_001414382.1 KEGG: pna:Pnap_3705 filamentous haemagglutinin family outer membrane protein YP_001414383.1 PFAM: beta-lactamase domain protein; KEGG: rso:RSc3268 hypothetical protein YP_001414384.1 PFAM: major facilitator superfamily MFS_1; KEGG: ter:Tery_2105 sodium:galactoside symporter family protein YP_001414385.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: mazg protein; K02428 MazG protein YP_001414386.1 PFAM: inositol monophosphatase; KEGG: stp:Strop_0369 inositol monophosphatase YP_001414387.1 PFAM: GTP-binding protein HSR1-related; KEGG: ret:RHE_CH01955 GTP-binding protein YP_001414388.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: host factor-I protein; K03666 host factor-I protein YP_001414389.1 PFAM: aminotransferase class IV; KEGG: mes:Meso_1614 aminotransferase, class IV YP_001414390.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_001414391.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: rpd:RPD_2592 sigma-54 factor, interaction region YP_001414392.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: mag:amb2368 signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation YP_001414393.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: bra:BRADO3866 nitrogen assimilation regulatory protein YP_001414394.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rpb:RPB_2883 signal transduction histidine kinase, nitrogen specific, NtrB YP_001414395.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: sil:SPO2089 tRNA-dihydrouridine synthase, putative YP_001414396.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MECDP-synthase; KEGG: rru:Rru_A1674 bifunctional enzyme, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_001414397.1 PFAM: phosphatidylglycerophosphatase A; KEGG: mag:amb2547 phosphatidylglycerophosphatase A and related protein YP_001414398.1 PFAM: CinA domain protein; KEGG: hne:HNE_2017 CinA domain protein YP_001414399.1 PFAM: cyclase/dehydrase; KEGG: pde:Pden_3870 cyclase/dehydrase YP_001414400.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001414401.1 PFAM: sulfatase; KEGG: vei:Veis_0934 sulfatase YP_001414402.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: acr:Acry_2823 dihydrolipoamide dehydrogenase YP_001414403.1 TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pde:Pden_3890 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase YP_001414404.1 catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase YP_001414405.1 PFAM: dehydrogenase E1 component; KEGG: nha:Nham_1749 pyruvate dehydrogenase (lipoamide) YP_001414406.1 PFAM: Septum formation initiator; KEGG: mlo:mlr0382 hypothetical protein YP_001414407.1 PFAM: enolase; KEGG: sme:SMc01028 probable enolase protein YP_001414408.1 PFAM: extracellular solute-binding protein family 5; KEGG: hha:Hhal_0597 extracellular solute-binding protein, family 5 YP_001414409.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0823 outer membrane hemin receptor YP_001414410.1 PFAM: transcriptional regulator PadR family protein; KEGG: btk:BT9727_1669 transcriptional regulator, PadR family YP_001414411.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: bbt:BBta_4081 hypothetical protein YP_001414412.1 KEGG: hypothetical protein YP_001414413.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: xac:XAC3614 6-pyruvoyltetrahydropterin synthase YP_001414414.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001414415.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mag:amb3096 signal transduction histidine kinase YP_001414416.1 PFAM: ATP-binding region ATPase domain protein; KEGG: mag:amb3096 signal transduction histidine kinase YP_001414417.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: eli:ELI_14540 hypothetical protein YP_001414418.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001414419.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001414420.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rru:Rru_A1888 preprotein translocase SecG subunit YP_001414421.1 KEGG: bbt:BBta_4786 putative exported protein of unknown function YP_001414423.1 KEGG: bbt:BBta_6772 hypothetical protein YP_001414424.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: bja:bsl3986 cold shock protein YP_001414425.1 KEGG: rme:Rmet_3279 putative transmembrane transcriptional regulator (anti-sigma factor) YP_001414426.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: mes:Meso_0146 RNA polymerase, sigma-24 subunit, ECF subfamily YP_001414427.1 KEGG: csa:Csal_1035 hypothetical protein YP_001414428.1 PFAM: protein of unknown function DUF1457 YP_001414429.1 PFAM: triosephosphate isomerase; KEGG: nwi:Nwi_1835 triosephosphate isomerase YP_001414431.1 KEGG: rpe:RPE_2592 PpiC-type peptidyl-prolyl cis-trans isomerase YP_001414432.1 TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: rru:Rru_A1891 anthranilate synthase component I YP_001414433.1 PFAM: monooxygenase FAD-binding; KEGG: mxa:MXAN_6265 monooxygenase, FAD-dependent YP_001414434.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sil:SPO2149 anthranilate synthase component II YP_001414435.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; KEGG: rru:Rru_A1896 anthranilate phosphoribosyl transferase YP_001414436.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: rpb:RPB_2798 indole-3-glycerol-phosphate synthase YP_001414437.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sen:SACE_0922 acetyltransferase, GNAT family YP_001414438.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_001414439.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: bbt:BBta_4484 molybdenum cofactor biosynthesis protein C YP_001414440.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: mag:amb2865 molybdopterin biosynthesis enzyme YP_001414441.1 Represses a number of genes involved in the response to DNA damage YP_001414442.1 PFAM: ComEC/Rec2-related protein; KEGG: rru:Rru_A1602 ComEC/Rec2-related protein YP_001414443.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: bme:BMEI0837 glutamyl-tRNA synthetase YP_001414444.1 TIGRFAM: citrate synthase I; PFAM: Citrate synthase; KEGG: bov:BOV_1106 citrate (Si)-synthase YP_001414445.1 TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; KEGG: rpe:RPE_2566 lipid-A-disaccharide synthase YP_001414446.1 PFAM: protein of unknown function DUF1009; KEGG: hne:HNE_1780 hypothetical protein YP_001414447.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_001414448.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: sme:SMc02092 probable 3R-hydroxymyristoyl-acyl carrier protein dehydratase YP_001414449.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_001414450.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: rde:RD1_2594 hypothetical protein YP_001414451.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: mmr:Mmar10_1388 surface antigen (D15) YP_001414452.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: rpe:RPE_2560 putative membrane-associated zinc metalloprotease YP_001414453.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001414454.1 PFAM: phosphatidate cytidylyltransferase; KEGG: mag:amb2493 CDP-diglyceride synthetase YP_001414455.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: rpe:RPE_2557 undecaprenyl diphosphate synthase YP_001414456.1 PFAM: ribosome recycling factor; KEGG: bov:BOV_1116 ribosome recycling factor YP_001414457.1 Catalyzes the phosphorylation of UMP to UDP YP_001414458.1 TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: rle:RL2222 putative elongation factor Ts (EF-Ts) YP_001414459.1 PFAM: ribosomal protein S2; KEGG: mlo:mll0651 30S ribosomal protein S2 YP_001414460.1 KEGG: bja:bll4866 DNA polymerase III alpha chain; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_001414461.1 PFAM: protein of unknown function DUF262; KEGG: aba:Acid345_4280 hypothetical protein YP_001414463.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: ret:RHE_CH00295 putative reductase protein YP_001414464.1 PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pol:Bpro_1366 hypothetical protein YP_001414466.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2571 ABC-type antimicrobial peptide transport system, ATPase component YP_001414467.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: nha:Nham_2196 lipoprotein releasing system, transmembrane protein, LolC/E family YP_001414468.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001414469.1 KEGG: bba:Bd1177 hypothetical protein YP_001414471.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: maq:Maqu_2813 xanthine/uracil/vitamin C permease YP_001414472.1 PFAM: protein of unknown function DUF1467; KEGG: nha:Nham_2203 protein of unknown function DUF1467 YP_001414473.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mag:amb2575 lactoylglutathione lyase and related lyase YP_001414474.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: mmr:Mmar10_1371 beta-lactamase domain protein YP_001414475.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: biotin protein ligase YP_001414476.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: bov:BOV_0810 NADH dehydrogenase I, N subunit YP_001414477.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mlo:mll1354 NADH dehydrogenase I chain M YP_001414478.1 TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); KEGG: mlo:mll1355 NADH dehydrogenase I chain L YP_001414479.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: mlo:mll1357 NADH dehydrogenase I chain K YP_001414480.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: mes:Meso_1031 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_001414481.1 Catalyzes the transfer of electrons from NADH to quinone YP_001414482.1 Catalyzes the transfer of electrons from NADH to quinone YP_001414483.1 Catalyzes the transfer of electrons from NADH to quinone YP_001414484.1 part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase YP_001414485.1 TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: bbt:BBta_4558 NADH-quinone oxidoreductase chain E YP_001414486.1 TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: bbt:BBta_4560 NADH-quinone oxidoreductase chain D YP_001414487.1 Catalyzes the transfer of electrons from NADH to quinone YP_001414488.1 TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: ret:RHE_CH01603 NADH-ubiquinone oxidoreductase chain B protein YP_001414489.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mes:Meso_1022 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_001414490.1 PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_2864 twin-arginine translocation pathway signal YP_001414491.1 PFAM: histone family protein DNA-binding protein; KEGG: rru:Rru_A1553 histone-like DNA-binding protein YP_001414492.1 KEGG: bme:BMEI0876 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_001414493.1 binds and unfolds substrates as part of the ClpXP protease YP_001414494.1 PFAM: peptidase S14 ClpP; KEGG: rpa:RPA2961 ATP-dependent Clp protease proteolytic subunit YP_001414495.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bms:BR1560 acetyltransferase, GNAT family YP_001414496.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mag:amb1388 diaminopimelate decarboxylase YP_001414497.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001414498.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: rpa:RPA2965 hypothetical protein YP_001414499.1 PFAM: Phosphoglycerate mutase; KEGG: hne:HNE_2081 phosphoglycerate mutase family protein YP_001414500.1 KEGG: aeh:Mlg_2138 hypothetical protein YP_001414501.1 KEGG: ret:RHE_CH02285 hypothetical protein YP_001414502.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001414503.1 PFAM: phospholipase/Carboxylesterase; KEGG: rsh:Rsph17029_1386 phospholipase/carboxylesterase YP_001414504.1 PFAM: aminotransferase class I and II; KEGG: acr:Acry_3059 aminotransferase, class I and II YP_001414505.1 PFAM: nitrogen regulatory protein P-II; KEGG: mes:Meso_1545 nitrogen regulatory protein P-II YP_001414506.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sme:SMc00948 glutamine synthetase I protein YP_001414507.1 KEGG: lpn:lpg1213 hypothetical protein YP_001414508.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: psa:PST_2511 di- and tricarboxylate transporter YP_001414509.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: hch:HCH_01469 NADH:flavin oxidoreductase, Old Yellow enzyme family YP_001414510.1 PFAM: Protein of unknown function YqcI/YcgG; KEGG: rru:Rru_A3044 hypothetical protein YP_001414511.1 KEGG: rru:Rru_A3045 hypothetical protein YP_001414512.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001414513.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rru:Rru_A3213 PAS/PAC sensor signal transduction histidine kinase YP_001414514.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rsh:Rsph17029_1195 DEAD/DEAH box helicase domain protein YP_001414515.1 PFAM: aldehyde dehydrogenase; KEGG: probable coniferyl aldehyde dehydrogenase YP_001414516.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mmr:Mmar10_1323 diguanylate cyclase YP_001414517.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azo:azo0300 probable enoyl-CoA hydratase YP_001414518.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001414519.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: nwi:Nwi_1659 HesB/YadR/YfhF YP_001414520.1 TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; KEGG: mlo:mlr0023 hypothetical protein YP_001414521.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mes:Meso_1778 cysteine desulfurases, SufS subfamily YP_001414522.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: nwi:Nwi_1662 FeS assembly protein SufD YP_001414523.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0437 Suf C, ATPase YP_001414524.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bbt:BBta_3966 transport protein associated with Fe-S cluster assembly, SufB YP_001414525.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb3029 cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme YP_001414526.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rru:Rru_A2028 transcriptional regulator, BadM/Rrf2 family YP_001414527.1 KEGG: rpe:RPE_2970 hypothetical protein YP_001414528.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001414529.1 TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; KEGG: ret:RHE_CH02258 tyrosyl-tRNA synthetase protein YP_001414530.1 KEGG: abo:ABO_1416 hypothetical protein YP_001414531.1 KEGG: mag:amb2682 hypothetical protein YP_001414532.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bbt:BBta_3956 hypothetical protein YP_001414533.1 PFAM: protein of unknown function DUF455; KEGG: sal:Sala_2183 protein of unknown function DUF455 YP_001414534.1 PFAM: peptidase M23B; KEGG: mmr:Mmar10_1304 peptidase M23B YP_001414535.1 PFAM: protein of unknown function DUF583; KEGG: mmr:Mmar10_1303 protein of unknown function DUF583 YP_001414536.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: hypothetical protein YP_001414537.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: atc:AGR_C_2479 peptide chain release factor RF-2 YP_001414538.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: bme:BMEI1055 penicillin-binding protein 1A YP_001414539.1 PFAM: cell wall hydrolase/autolysin; KEGG: rpe:RPE_2978 N-acetylmuramoyl-L-alanine amidase YP_001414540.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: sme:SMc01336 probable ribonuclease E protein YP_001414541.1 PFAM: gamma-glutamyltranspeptidase; KEGG: acr:Acry_1628 gamma-glutamyltranspeptidase YP_001414542.1 PFAM: TPR repeat-containing protein; peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:bll4295 hypothetical protein YP_001414543.1 PFAM: DSBA oxidoreductase; KEGG: mag:amb1392 protein-disulfide isomerase YP_001414544.1 PFAM: fatty acid desaturase; KEGG: nha:Nham_2541 fatty acid desaturase YP_001414545.1 PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: bbr:BB1929 fructose-1,6-bisphosphatase YP_001414546.1 KEGG: ppu:PP_3329 hypothetical protein YP_001414547.1 KEGG: rsq:Rsph17025_2827 membrane protein-like protein YP_001414548.1 KEGG: pau:PA14_36930 hypothetical protein YP_001414549.1 KEGG: psb:Psyr_0769 conserved hypothetical membrane-anchored protein YP_001414550.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001414551.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: thiamin biosynthesis ThiS; K03154 thiamine biosynthesis ThiS YP_001414552.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_001414553.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rpd:RPD_2432 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001414554.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: mlo:mll0203 biotin carboxylase YP_001414555.1 PFAM: AsmA family protein; KEGG: gbe:GbCGDNIH1_0797 AsmA family protein YP_001414556.1 PFAM: leucyl/phenylalanyl-tRNA--protein transferase; KEGG: mmr:Mmar10_1264 leucyltransferase YP_001414557.1 KEGG: mes:Meso_1718 cellulase-like protein YP_001414558.1 PFAM: Mammalian cell entry related domain protein; KEGG: mag:amb2743 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_001414559.1 PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: rpd:RPD_2418 NADH:ubiquinone oxidoreductase 17.2 kD subunit YP_001414560.1 PFAM: response regulator receiver; KEGG: chemotaxis protein CheYIII YP_001414561.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001414563.1 PFAM: beta-Ig-H3/fasciclin; KEGG: rde:RD1_3293 hypothetical protein YP_001414564.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001414565.1 PFAM: acyltransferase 3; KEGG: bam:Bamb_3359 acyltransferase 3 YP_001414566.1 KEGG: sus:Acid_6600 hypothetical protein YP_001414567.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: rpa:RPA0118 dTDP-6-deoxy-D-glucose-3,5-epimerase YP_001414568.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rpd:RPD_1571 dTDP-glucose 4,6-dehydratase YP_001414569.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: mca:MCA1283 glucose-1-phosphate thymidylyltransferase YP_001414570.1 PFAM: glycosyl transferase family 2; KEGG: oih:OB2419 hypothetical protein YP_001414571.1 KEGG: neu:NE2172 SAM (and some other nucleotide) binding motif YP_001414572.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: mbb:BCG_1568c hypothetical protein YP_001414573.1 PFAM: WbqC-like family protein; KEGG: neu:NE2176 hypothetical protein YP_001414574.1 KEGG: neu:NE2177 hypothetical protein YP_001414575.1 KEGG: rsp:RSP_3985 hypothetical protein YP_001414576.1 KEGG: rle:RL0805 putative transmembrane protein YP_001414577.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: rle:RL0802 putative deoxygenase YP_001414578.1 KEGG: mtf:TBFG_11533 hypothetical protein YP_001414579.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rle:RL0803 hypothetical protein YP_001414580.1 PFAM: glycosyl transferase family 2; KEGG: chu:CHU_2999 b-glycosyltransferase, glycosyltransferase family 2 protein YP_001414581.1 catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis YP_001414582.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bra:BRADO0169 hypothetical protein; putative methyl transferase YP_001414583.1 PFAM: putative methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: nmu:Nmul_A0287 generic methyltransferase YP_001414584.1 KEGG: oih:OB2417 hypothetical protein YP_001414585.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: mag:amb2836 ribonuclease D YP_001414586.1 PFAM: Ppx/GppA phosphatase; KEGG: mlo:mlr8162 exopolyphosphatase YP_001414587.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_001414589.1 PFAM: Chromosomal replication initiator DnaA; KEGG: nha:Nham_2116 hypothetical protein YP_001414590.1 PFAM: protein of unknown function UPF0118; KEGG: rsh:Rsph17029_2435 protein of unknown function UPF0118 YP_001414591.1 KEGG: mag:amb2845 hypothetical protein YP_001414592.1 TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: atc:AGR_C_2111 5'-phosphoribosyl-5-aminoimidazole synthetase YP_001414593.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: rru:Rru_A2168 phosphoribosylglycinamide formyltransferase YP_001414594.1 PFAM: nucleoside diphosphate kinase; KEGG: swi:Swit_0030 nucleoside-diphosphate kinase YP_001414595.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_1754 ABC transporter related YP_001414596.1 PFAM: beta-lactamase domain protein; KEGG: nar:Saro_1798 beta-lactamase-like YP_001414597.1 PFAM: DNA polymerase III chi subunit HolC; KEGG: atc:AGR_C_2056 putative DNA polymerase III chi subunit YP_001414598.1 PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: rpc:RPC_2314 leucyl aminopeptidase YP_001414599.1 PFAM: permease YjgP/YjgQ family protein; KEGG: hypothetical protein YP_001414600.1 PFAM: permease YjgP/YjgQ family protein; KEGG: mag:amb3906 predicted permease YP_001414601.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: bbt:BBta_3829 putative organic solvent tolerance protein OstA (ImpA) YP_001414602.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: peptidyl-prolyl cis-trans isomerase family protein YP_001414603.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: mag:amb3717 pyridoxal phosphate biosynthesis protein YP_001414604.1 TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: sit:TM1040_0944 dimethyladenosine transferase YP_001414605.1 PFAM: glycosyl transferase family 2; KEGG: sit:TM1040_0077 glycosyl transferase, family 2 YP_001414606.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll4101 putative NAD-dependent alcohol dehydrogenase YP_001414607.1 PFAM: Cephalosporin hydroxylase; KEGG: cbo:CBO2712 hydroxylase YP_001414608.1 KEGG: cbo:CBO2713 methyltransferase YP_001414609.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02652 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase YP_001414610.1 PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_2382 glycosyl transferase, family 2 YP_001414611.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; KEGG: vei:Veis_4417 C-methyltransferase YP_001414612.1 PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: sme:SMb21428 putative dTDP-4-dehydrorhamnose 3,5-epimerase protein YP_001414613.1 TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sme:SMb21417 putative CDP-glucose 4,6-dehydratase protein YP_001414614.1 TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sme:SMb21416 putative glucose-1-phosphate cytidylyltransferase protein YP_001414615.1 Essential for recycling GMP and indirectly, cGMP YP_001414616.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: rru:Rru_A0428 hypothetical protein YP_001414617.1 PFAM: aminodeoxychorismate lyase; KEGG: mes:Meso_1765 aminodeoxychorismate lyase YP_001414618.1 PFAM: Beta-ketoacyl synthase; KEGG: bbt:BBta_3820 3-oxoacyl-(acyl-carrier-protein) synthase II YP_001414619.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: mag:amb2107 acyl carrier protein YP_001414620.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mag:amb2106 dehydrogenase with different specificities YP_001414621.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mag:amb2105 S-malonyltransferase YP_001414622.1 PFAM: ribosomal protein S6; KEGG: mlo:mll7846 30S ribosomal protein S6 YP_001414623.1 PFAM: ribosomal protein S18; KEGG: 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 YP_001414624.1 PFAM: ribosomal protein L9; KEGG: bov:BOV_0458 ribosomal protein L9 YP_001414625.1 KEGG: rpe:RPE_2456 hypothetical protein YP_001414626.1 KEGG: sme:SMa1644 hypothetical protein YP_001414627.1 PFAM: UspA domain protein; KEGG: sal:Sala_2574 UspA YP_001414628.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bbt:BBta_7296 cadmium-exporting ATPase YP_001414629.1 KEGG: pna:Pnap_2858 insertion element protein YP_001414630.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: nha:Nham_4533 heavy metal efflux pump CzcA YP_001414631.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpd:RPD_3342 secretion protein HlyD YP_001414632.1 PFAM: outer membrane efflux protein; KEGG: bbt:BBta_7183 putative outer membrane protein precursor CzcC YP_001414634.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: net:Neut_0085 transcriptional regulator, MerR family protein YP_001414635.1 PFAM: Heavy metal transport/detoxification protein; KEGG: acr:Acry_3236 E1-E2 ATPase-associated domain protein YP_001414636.1 KEGG: har:HEAR1967 hypothetical protein YP_001414637.1 PFAM: Prophage CP4-57 regulatory; KEGG: har:HEAR1968 putative CP4-57 prophage; transcriptional acitvator of a P4-like cryptic prophage YP_001414638.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: har:HEAR1969 putative chromosome partitioning related protein YP_001414639.1 KEGG: har:HEAR1970 hypothetical protein YP_001414640.1 KEGG: har:HEAR1971 hypothetical protein YP_001414641.1 KEGG: har:HEAR1972 hypothetical protein YP_001414642.1 KEGG: har:HEAR1973 hypothetical protein YP_001414643.1 PFAM: Domain of unknown function DUF1845; KEGG: rme:Rmet_2295 hypothetical protein YP_001414644.1 KEGG: rme:Rmet_2296 hypothetical protein YP_001414645.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_001414646.1 decatenates replicating daughter chromosomes YP_001414647.1 KEGG: rme:Rmet_2299 cation efflux protein YP_001414648.1 KEGG: rme:Rmet_2301 hypothetical protein YP_001414649.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: rme:Rmet_2302 transcriptional regulator, MerR family YP_001414650.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_2303 heavy metal translocating P-type ATPase YP_001414651.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: rme:Rmet_2304 lipoprotein signal peptidase YP_001414652.1 KEGG: rme:Rmet_2305 hypothetical protein YP_001414653.1 KEGG: rme:Rmet_2306 hypothetical protein YP_001414654.1 KEGG: har:HEAR1982 hypothetical protein YP_001414655.1 KEGG: har:HEAR1983 hypothetical protein YP_001414656.1 KEGG: har:HEAR1985 hypothetical protein YP_001414657.1 KEGG: ajs:Ajs_1437 hypothetical protein YP_001414658.1 KEGG: xfa:XF1764 hypothetical protein YP_001414659.1 KEGG: ajs:Ajs_1294 hypothetical protein YP_001414660.1 KEGG: bxe:Bxe_A1208 hypothetical protein YP_001414661.1 KEGG: xcv:XCV2393 hypothetical protein YP_001414662.1 KEGG: net:Neut_0108 hypothetical protein YP_001414663.1 KEGG: har:HEAR1992 hypothetical protein YP_001414664.1 KEGG: ajs:Ajs_1420 hypothetical protein YP_001414665.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: har:HEAR1996 putative helicase from plasmid origin YP_001414666.1 KEGG: fjo:Fjoh_3686 hypothetical protein YP_001414667.1 PFAM: UvrD/REP helicase; KEGG: har:HEAR1998 putative DNA helicase II YP_001414668.1 KEGG: har:HEAR1999 hypothetical protein YP_001414669.1 KEGG: har:HEAR2000 hypothetical protein YP_001414670.1 KEGG: bxe:Bxe_A1199 hypothetical protein YP_001414671.1 KEGG: har:HEAR2002 conserved hypothetical protein; putative signal peptide YP_001414672.1 PFAM: Lytic transglycosylase catalytic; KEGG: bxe:Bxe_A1197 hypothetical protein YP_001414673.1 KEGG: bxe:Bxe_A1196 hypothetical protein YP_001414674.1 KEGG: har:HEAR2005 hypothetical protein YP_001414675.1 KEGG: har:HEAR2006 hypothetical protein YP_001414676.1 KEGG: rme:Rmet_2345 plasmid conserved hypothetical protein, RAQPRD YP_001414677.1 KEGG: ajs:Ajs_1263 hypothetical protein YP_001414678.1 KEGG: ajs:Ajs_1404 hypothetical protein YP_001414679.1 KEGG: bxe:Bxe_A1189 hypothetical protein YP_001414680.1 KEGG: xcb:XC_2035 hypothetical protein YP_001414681.1 KEGG: xcv:XCV2370 putative secreted protein YP_001414682.1 KEGG: rme:Rmet_2351 putative secreted protein YP_001414683.1 KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide YP_001414684.1 KEGG: xcv:XCV2367 hypothetical protein YP_001414685.1 KEGG: xcv:XCV2366 hypothetical protein YP_001414686.1 PFAM: DNA repair protein RadC; KEGG: har:HEAR2022 putative DNA repair protein, RadC family DNA repair protein; CP4-6 prophage YP_001414687.1 PFAM: protein of unknown function DUF1525; KEGG: har:HEAR2023 hypothetical protein YP_001414688.1 PFAM: protein of unknown function DUF1527; KEGG: bxe:Bxe_A1180 hypothetical protein YP_001414689.1 KEGG: rme:Rmet_2358 hypothetical protein YP_001414690.1 KEGG: ajs:Ajs_1250 hypothetical protein YP_001414691.1 KEGG: ajs:Ajs_1391 hypothetical protein YP_001414692.1 KEGG: xcv:XCV2359 hypothetical protein YP_001414693.1 KEGG: bxe:Bxe_A1175 hypothetical protein YP_001414694.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: ajs:Ajs_1246 transcriptional regulator, AbrB family YP_001414695.1 PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein YP_001414697.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain protein; SMART: AAA ATPase; KEGG: bvi:Bcep1808_6226 IstB domain protein ATP-binding protein YP_001414698.1 PFAM: Integrase catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_5143 integrase, catalytic region YP_001414699.1 KEGG: xcb:XC_3476 hypothetical protein YP_001414700.1 KEGG: xac:XAC0808 hypothetical protein YP_001414701.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: har:HEAR2593 putative outer membrane transport protein involved in copper (silver) tolerance (CusC) YP_001414702.1 PFAM: secretion protein HlyD family protein; KEGG: azo:azo2911 membrane fusion protein YP_001414703.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related YP_001414704.1 PFAM: ABC-2 type transporter; KEGG: ajs:Ajs_2362 ABC-2 type transporter YP_001414705.1 KEGG: bvi:Bcep1808_6163 hypothetical protein YP_001414706.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_1333 acetoacetyl-CoA reductase YP_001414707.1 KEGG: bvi:Bcep1808_6174 hypothetical protein YP_001414708.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: har:HEAR1516 putative phosphate acetyltransferase YP_001414709.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rme:Rmet_1335 short-chain dehydrogenase/reductase SDR YP_001414710.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: har:HEAR1515 acetate kinase (acetokinase) YP_001414711.1 PFAM: sodium/glutamate symporter; KEGG: psa:PST_0687 sodium-glutamate symporter YP_001414712.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: eba:ebA5073 putative poly-beta-hydroxyalkanoate synthase YP_001414713.1 PFAM: UspA domain protein; KEGG: rme:Rmet_1334 UspA YP_001414714.1 KEGG: xcb:XC_0709 hypothetical protein YP_001414715.1 Catalyzes the formation of PRPP from ATP and ribose 5-phosphate YP_001414716.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase YP_001414717.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: bbr:BB2340 metallo-beta-lactamase family protein YP_001414718.1 catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine YP_001414719.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_2400 transcriptional regulator, LysR family YP_001414720.1 PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_2401 transcriptional regulator, XRE family YP_001414721.1 PFAM: LysR substrate-binding; KEGG: har:HEAR2052 hypothetical protein YP_001414722.1 PFAM: integrase family protein; KEGG: har:HEAR2054 integrase YP_001414723.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpa:RPA3260 putative cation-transporting P-type ATPase YP_001414724.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mes:Meso_4111 potassium transporter (trk family) YP_001414725.1 KEGG: rsh:Rsph17029_3024 hypothetical protein YP_001414726.1 KEGG: rpe:RPE_2440 hypothetical protein YP_001414727.1 KEGG: sme:SMa0285 hypothetical protein YP_001414728.1 PFAM: protein of unknown function DUF433; KEGG: pna:Pnap_4858 protein of unknown function DUF433 YP_001414729.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mes:Meso_3871 cyclopropane-fatty-acyl-phospholipid synthase YP_001414730.1 PFAM: DoxX family protein; KEGG: sme:SMb20597 hypothetical protein YP_001414731.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: rpb:RPB_2458 replicative DNA helicase YP_001414732.1 PFAM: CBS domain containing protein; KEGG: vpa:VP0814 hypothetical protein YP_001414733.1 KEGG: ppr:PBPRA2810 putative nitrogen regulatory protein P-II family protein YP_001414734.1 PFAM: protein of unknown function DUF1538; KEGG: ppr:PBPRA2811 hypothetical PTS system mannose-specific, factor IIC YP_001414735.1 PFAM: protein of unknown function DUF1538; KEGG: cps:CPS_1953 hypothetical protein YP_001414736.1 PFAM: UspA domain protein; KEGG: pau:PA14_56590 putative universal stress protein YP_001414737.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: rru:Rru_A3213 PAS/PAC sensor signal transduction histidine kinase YP_001414738.1 TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: rpe:RPE_3334 alanine racemase YP_001414739.1 PFAM: protein of unknown function DUF140; KEGG: rru:Rru_A0408 protein of unknown function DUF140 YP_001414740.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb2093 ABC-type transport system involved in resistance to organic solvents YP_001414741.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001414742.1 PFAM: Colicin V production protein; KEGG: mes:Meso_0984 colicin V production protein YP_001414743.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001414744.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rru:Rru_A0403 short-chain dehydrogenase/reductase SDR YP_001414745.1 KEGG: mlo:mlr3986 hypothetical protein YP_001414746.1 PFAM: helix-turn-helix HxlR type; KEGG: rpa:RPA0326 DUF24, predicted transcriptional regulator, related to MarR family YP_001414747.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: atc:AGR_L_1617 hypothetical protein YP_001414748.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: sit:TM1040_0991 small GTP-binding protein domain YP_001414749.1 PFAM: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD40-like repeat YP_001414750.1 KEGG: rpc:RPC_2277 hypothetical protein YP_001414751.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; KEGG: rpe:RPE_3348 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001414752.1 KEGG: sit:TM1040_2884 hypothetical protein YP_001414753.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat YP_001414754.1 KEGG: mva:Mvan_3975 hypothetical protein YP_001414755.1 PFAM: cytochrome P450; KEGG: mva:Mvan_3974 cytochrome P450 YP_001414756.1 SMART: regulatory protein MarR YP_001414757.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: bra:BRADO3992 aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) YP_001414758.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc04054 hypothetical protein YP_001414759.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: rfr:Rfer_4108 3-demethylubiquinone-9 3-methyltransferase YP_001414760.1 PFAM: regulatory protein ArsR; KEGG: mes:Meso_2191 transcriptional regulator, ArsR family YP_001414761.1 PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_4405 FAD dependent oxidoreductase YP_001414762.1 PFAM: Intracellular septation protein A; KEGG: bov:BOV_1862 intracellular septation protein A YP_001414763.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bam:Bamb_5638 short-chain dehydrogenase/reductase SDR YP_001414765.1 KEGG: cps:CPS_2955 hypothetical protein YP_001414766.1 PFAM: Domain of unknown function DUF1814; KEGG: gbe:GbCGDNIH1_1177 hypothetical protein YP_001414767.1 KEGG: mlo:mll5901 hypothetical protein YP_001414768.1 PFAM: domain of unknown function DUF1738; KEGG: bbt:BBta_7394 putative ArdC antirestriction protein YP_001414769.1 PFAM: ParB domain protein nuclease; KEGG: pde:Pden_1541 ParB-like partition proteins YP_001414770.1 KEGG: pde:Pden_1536 hypothetical protein YP_001414771.1 KEGG: mes:Meso_3821 hypothetical protein YP_001414772.1 KEGG: pde:Pden_1539 hypothetical protein YP_001414773.1 KEGG: pde:Pden_1533 probable methylase/helicase YP_001414774.1 KEGG: bbt:BBta_7718 hypothetical protein YP_001414775.1 KEGG: pde:Pden_1531 hypothetical protein YP_001414776.1 KEGG: rle:pRL120075 putative plasmid stability protein StbC YP_001414777.1 PFAM: PilT protein domain protein; KEGG: rle:pRL120076 putative plasmid stability protein StbB YP_001414778.1 KEGG: mlo:msr9708 hypothetical protein YP_001414779.1 KEGG: nwi:Nwi_2132 hypothetical protein YP_001414780.1 PFAM: protein of unknown function DUF736; KEGG: mlo:mlr9738 hypothetical protein YP_001414782.1 KEGG: mes:Meso_0528 transcriptional regulator, XRE family YP_001414783.1 KEGG: mes:Meso_0527 hypothetical protein YP_001414784.1 KEGG: pde:Pden_3174 hypothetical protein YP_001414785.1 KEGG: pde:Pden_1513 hypothetical protein YP_001414786.1 KEGG: pde:Pden_1512 replication protein A YP_001414787.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: mes:Meso_2336 cobyrinic acid a,c-diamide synthase YP_001414788.1 KEGG: bja:bsl0049 hypothetical protein YP_001414789.1 KEGG: bbt:BBta_7734 hypothetical protein YP_001414790.1 KEGG: mes:Meso_2333 conjugal transfer protein precursor YP_001414791.1 PFAM: protein of unknown function DUF736; KEGG: bbt:BBta_7736 hypothetical protein YP_001414792.1 PFAM: Lytic transglycosylase catalytic; KEGG: pde:Pden_3185 lytic transglycosylase, catalytic YP_001414793.1 KEGG: pde:Pden_1507 hypothetical protein YP_001414794.1 type IV secretion VirD4 coupling protein family YP_001414795.1 KEGG: bja:bll0042 hypothetical protein YP_001414796.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: mes:Meso_2324 type II secretion system protein E YP_001414797.1 PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_1483 conjugal transfer protein TrbC YP_001414798.1 KEGG: mlo:mll9611 conjugal transfer protein trbB YP_001414799.1 type IV secretion system VirB4 family YP_001414800.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pde:Pden_1480 conjugal transfer protein TrbJ YP_001414801.1 KEGG: mes:Meso_2319 hypothetical protein YP_001414802.1 type IV secretion VirB6 family YP_001414803.1 PFAM: Conjugal transfer protein; KEGG: mes:Meso_0502 conjugal transfer protein YP_001414804.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX YP_001414805.1 PFAM: conjugation TrbI family protein; KEGG: mes:Meso_0500 conjugation TrbI-like protein YP_001414806.1 KEGG: gbe:GbCGDNIH1_1065 hypothetical protein YP_001414807.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_3205 transcriptional regulator, LysR family YP_001414808.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: vei:Veis_2614 phage transcriptional regulator, AlpA YP_001414809.1 KEGG: dno:DNO_0182 conserved hypothetical protein VrlJ YP_001414810.1 KEGG: ace:Acel_0812 hypothetical protein YP_001414811.1 PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0482 divergent AAA ATP YP_001414812.1 KEGG: chu:CHU_1497 conserved hypothetical protein; possible histidine kinase YP_001414813.1 KEGG: ace:Acel_0814 hypothetical protein YP_001414814.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: ace:Acel_0816 helicase domain protein YP_001414815.1 PFAM: PglZ domain protein; KEGG: dno:DNO_0176 conserved hypothetical protein VrlP YP_001414816.1 KEGG: dno:DNO_0175 conserved hypothetical protein VrlQ YP_001414817.1 PFAM: Prophage CP4-57 regulatory; KEGG: rpa:RPA2205 hypothetical protein YP_001414818.1 PFAM: integrase family protein; KEGG: rpa:RPA2204 integrase YP_001414819.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: pde:Pden_4050 isoprenylcysteine carboxyl methyltransferase YP_001414820.1 PFAM: regulatory protein MarR; KEGG: bha:BH2061 transcriptional regulator (MarR family) YP_001414821.1 KEGG: mes:Meso_4022 protein of unknown function DUF540 YP_001414822.1 KEGG: acr:Acry_2024 hypothetical protein YP_001414823.1 KEGG: sal:Sala_2745 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_001414824.1 KEGG: bja:bll0688 hypothetical protein YP_001414825.1 catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_001414826.1 PFAM: dihydrodipicolinate reductase; KEGG: rle:RL0180 putative dihydrodipicolinate reductase YP_001414827.1 PFAM: protein of unknown function DUF486; KEGG: sme:SMc04230 hypothetical transmembrane signal peptide protein YP_001414828.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sme:SMc02858 probable chaperone protein YP_001414829.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: sme:SMc02857 heat shock protein 70 (HSP70) chaperone YP_001414830.1 PFAM: Sel1 domain protein repeat-containing protein YP_001414831.1 PFAM: 2OG-Fe(II) oxygenase; KEGG: rle:RL0039 putative alkylated DNA repair protein YP_001414832.1 PFAM: NnrUfamily protein; KEGG: mca:MCA0498 hypothetical protein YP_001414833.1 PFAM: GrpE protein; KEGG: bov:BOV_0165 heat shock protein GrpE YP_001414834.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001414835.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001414836.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_001414837.1 KEGG: mlo:mlr4627 oxygen-independent coproporphyrinogen III oxidase (hemN); TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_001414838.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase domain; KEGG: pde:Pden_0174 maleylacetoacetate isomerase YP_001414839.1 PFAM: Extracellular ligand-binding receptor; KEGG: mmr:Mmar10_3012 ABC-type branched-chain amino acid transport systems, periplasmic component YP_001414840.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rpe:RPE_0357 protein of unknown function UPF0011 YP_001414841.1 PFAM: protein of unknown function UPF0102; KEGG: bra:BRADO0179 hypothetical protein YP_001414842.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: mag:amb4504 predicted periplasmic or secreted lipoprotein YP_001414843.1 KEGG: swi:Swit_1164 hypothetical protein YP_001414844.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_001414846.1 PFAM: peptidase M19 renal dipeptidase; KEGG: sus:Acid_3699 membrane dipeptidase YP_001414847.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mlo:mlr2805 hypothetical protein YP_001414848.1 KEGG: sfu:Sfum_1249 hypothetical protein YP_001414849.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: mes:Meso_3583 Mg chelatase, subunit ChlI YP_001414850.1 KEGG: rpc:RPC_0315 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein YP_001414851.1 PFAM: major facilitator superfamily MFS_1; KEGG: tbd:Tbd_0253 putative transport transmembrane protein YP_001414852.1 KEGG: rpa:RPA0316 hypothetical protein YP_001414853.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_001414854.1 TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: bms:BR0147 DNA mismatch repair protein MutS YP_001414855.1 PFAM: Methyltransferase type 11; KEGG: sfu:Sfum_3345 hypothetical protein YP_001414857.1 catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein YP_001414858.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; plasmid stabilization system; KEGG: gsu:GSU2439 RelE protein YP_001414859.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: mag:amb4409 uncharacterized membrane protein, putative virulence factor YP_001414860.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pmy:Pmen_4041 integral membrane sensor hybrid histidine kinase YP_001414861.1 PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: pde:Pden_4349 two component transcriptional regulator, LuxR family YP_001414862.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: bam:Bamb_4364 outer membrane autotransporter barrel domain YP_001414863.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; KEGG: nha:Nham_0012 tryptophanyl-tRNA synthetase YP_001414864.1 KEGG: mag:amb4407 hypothetical protein YP_001414865.1 PFAM: UspA domain protein; KEGG: rle:RL0401 putative universal stress protein YP_001414866.1 PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: sit:TM1040_3091 nitrogen-fixing NifU-like YP_001414867.1 PFAM: nitroreductase; KEGG: ecs:ECs1254 putative enzyme YP_001414868.1 PFAM: peptidase M22 glycoprotease; KEGG: glycoprotease family protein YP_001414869.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bov:BOV_2064 ribosomal-protein-alanine acetyltransferase YP_001414870.1 PFAM: ferric-uptake regulator; KEGG: mmr:Mmar10_3031 ferric uptake regulator, Fur family YP_001414871.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: bmb:BruAb1_2126 acyltransferase, hypothetical YP_001414872.1 KEGG: ret:RHE_CH00376 putative 2-methylthioadenine synthetase (MiaB-like) protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_001414873.1 PFAM: PhoH family protein; KEGG: sme:SMc01114 hypothetical PHOH-like protein YP_001414874.1 PFAM: protein of unknown function UPF0054; KEGG: mag:amb4465 predicted metal-dependent hydrolase YP_001414875.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: rru:Rru_A3773 CBS domain protein YP_001414876.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rpd:RPD_0238 apolipoprotein N-acyltransferase YP_001414877.1 PFAM: helix-turn-helix domain protein; KEGG: sme:SMc01110 DNA-binding protein YP_001414878.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001414879.1 TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; KEGG: bbt:BBta_0053 tRNA (guanine-N(7)-)-methyltransferase YP_001414880.1 PFAM: protein of unknown function DUF150; KEGG: jan:Jann_0041 protein of unknown function DUF150 YP_001414881.1 TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH type 1 domain protein; NusA domain protein; SMART: KH domain protein; KEGG: sme:SMc02912 probable N utilization substance protein A YP_001414882.1 PFAM: protein of unknown function DUF448; KEGG: pde:Pden_2593 protein of unknown function DUF448 YP_001414883.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein; KEGG: rpb:RPB_0600 translation initiation factor IF-2 YP_001414884.1 PFAM: ribosome-binding factor A; KEGG: mag:amb4070 ribosome-binding factor A YP_001414885.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: bbt:BBta_0059 tRNA pseudouridine synthase B YP_001414886.1 PFAM: ribosomal protein S15; KEGG: sme:SMc00323 30S ribosomal protein S15 YP_001414887.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; SMART: KH domain protein; KEGG: mes:Meso_3935 3' exoribonuclease YP_001414888.1 KEGG: swi:Swit_3433 hypothetical protein YP_001414889.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr0771 enoyl-(acyl carrier protein) reductase YP_001414890.1 PFAM: Beta-ketoacyl synthase; KEGG: rpd:RPD_0221 beta-ketoacyl synthase YP_001414891.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_001414892.1 PFAM: ferric-uptake regulator; KEGG: mag:amb4306 Fe2+/Zn2+ uptake regulation protein YP_001414893.1 PFAM: Rubrerythrin; KEGG: pub:SAR11_0399 rubrerythrin YP_001414894.1 KEGG: pub:SAR11_0400 anaerobic glycerol-3-phosphate dehydrogenase subunit C YP_001414895.1 KEGG: pub:SAR11_0401 hypothetical protein YP_001414896.1 PFAM: sulfatase; KEGG: bmb:BruAb2_1121 sulfatase YP_001414897.1 PFAM: protein of unknown function DUF1058; KEGG: mlo:mll5573 hypothetical protein YP_001414898.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hne:HNE_3433 glyoxylate reductase YP_001414899.1 KEGG: cbu:CBUA0027 DNA-binding protein YP_001414900.1 PFAM: protein of unknown function DUF1044; KEGG: shn:Shewana3_1245 protein of unknown function DUF1044 YP_001414901.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rpc:RPC_0364 UBA/ThiF-type NAD/FAD binding fold YP_001414902.1 KEGG: rpe:RPE_0758 hypothetical protein YP_001414903.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rxy:Rxyl_3013 short-chain dehydrogenase/reductase SDR YP_001414904.1 PFAM: DSBA oxidoreductase; KEGG: pau:PA14_01440 putative 2-hydroxychromene-2-carboxylate isomerase YP_001414905.1 PFAM: DSBA oxidoreductase; KEGG: bbt:BBta_5151 hypothetical protein YP_001414906.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_01430 putative short chain dehydrogenase YP_001414907.1 PFAM: helix-turn-helix HxlR type; KEGG: pau:PA14_01410 putative transcriptional regulator YP_001414908.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: atc:AGR_C_543 cysteine synthase A YP_001414909.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rru:Rru_A3795 transcriptional regulator, BadM/Rrf2 family YP_001414910.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: bja:bll0758 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001414911.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: sil:SPO0408 phosphopantothenoylcysteine synthase/decarboxylase YP_001414912.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: bbt:BBta_0082 ubiquinone biosynthesis protein UbiB YP_001414913.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rpe:RPE_0470 ubiquinone/menaquinone biosynthesis methyltransferases YP_001414914.1 TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase; KEGG: hne:HNE_3274 formamidopyrimidine-DNA glycosylase YP_001414915.1 KEGG: mag:amb0633 hypothetical protein YP_001414916.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rru:Rru_A3801 enoyl-CoA hydratase/isomerase