-- dump date   	20140619_232002
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_048133.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_048134.1	transcriptional repressor of asnA which codes for aspartate-ammonia ligase
YP_048135.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_048136.1	contains a von Willibrand factor type A domain; stimulates the ATPase activity of RavA
YP_048137.1	interacts with LdcI, lysine decarboxylase; may be active in late log/ early stationary phase
YP_048138.1	Responsible for the low-affinity transport of potassium into the cell; involved in potassium ion uptake under hyper-osmotic stress at a low pH
YP_048139.1	Similar to Escherichia coli sensor protein QseC SWALL:QSEC_ECOLI (SWALL:P40719) (449 aa) fasta scores: E(): 7.4e-94, 56.15% id in 447 aa
YP_048140.1	Similar to Escherichia coli transcriptional regulatory protein QseB SWALL:QSEB_ECOLI (SWALL:P52076) (219 aa) fasta scores: E(): 3.1e-59, 68.34% id in 218 aa
YP_048141.1	Similar to Salmonella typhimurium, and Salmonella typhi  outer membrane proteinYgiW or stm3176 or sty3353 SWALL:Q8XGT5 (EMBL:AE008846) (130 aa) fasta scores: E(): 1.8e-27, 63.35% id in 131 aa, and to Yersinia pestis exported protein ypo3027 or y1455 SWALL:Q8ZCG4 (EMBL:AJ414155) (137 aa) fasta scores: E(): 1.4e-20, 50.73% id in 136 aa
YP_048142.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_048143.1	with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain
YP_048144.1	functions to transport ribose at high affinity; forms a complex with RbsA2C2B
YP_048145.1	periplasmic substrate-binding component of the ATP-dependent ribose transport system
YP_048146.1	catalyzes the formation of D-ribose 5-phosphate from ribose
YP_048147.1	DNA-binding transcriptional repressor of ribose metabolism
YP_048148.1	in Escherichia coli the MobB protein is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway
YP_048149.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_048150.1	Similar to Pectobacterium carotovorum subsp. carotovorum YihD SWALL:Q9RB12 (EMBL:AF146615) (89 aa) fasta scores: E(): 6.6e-33, 98.87% id in 89 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YihD SWALL:YIHD_ECOLI (SWALL:P32126) (89 aa) fasta scores: E(): 1.8e-26, 80.89% id in 89 aa
YP_048151.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_048152.1	Similar to Erwinia carotovora thiol:disulfide interchange protein DsbA precursor SWALL:DSBA_ERWCA (SWALL:Q9RB10) (207 aa) fasta scores: E(): 1.2e-76, 98.55% id in 207 aa
YP_048153.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_048154.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_048155.1	Similar to Yersinia pestis hypothetical protein SWALL:Q8ZJR9 (EMBL:AJ414141) (188 aa) fasta scores: E(): 7.4e-26, 58.96% id in 173 aa, and to Escherichia coli O157:H7 orf, hypothetical protein SWALL:Q8X8G9 (EMBL:AE005617) (168 aa) fasta scores: E(): 2e-12, 53.29% id in 167 aa
YP_048156.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_048157.1	response regulator of a two-component regulatory system involved in the activation of nitrogen assimilation genes; interacts with sigma-54
YP_048158.1	sensory histidine kinase in two-component regulatory system with GlnG; acts as a signal transducer which responds to the nitrogen level of cell and modulates the activity of ntrC by phosphorylation/dephosphorylation
YP_048159.1	forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme
YP_048160.1	Similar to Escherichia coli GTP-binding protein TypA or BipA or b3871 SWALL:TYPA_ECOLI (SWALL:P32132) (591 aa) fasta scores: E(): 1.1e-189, 90.18% id in 591 aa. Found to be a virulence regulator in an enteropathogenic Escherichia coli (PMID: 9622352).
YP_048161.1	Similar to Yersinia pestis hypothetical protein SWALL:AAM87347 (EMBL:AJ414141) (196 aa) fasta scores: E(): 4.3e-55, 71.42% id in 196 aa, and to Escherichia coli hypothetical protein YihX SWALL:YIHX_ECOLI (SWALL:P32145) (199 aa) fasta scores: E(): 2.8e-51, 64.61% id in 195 aa
YP_048162.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_048163.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YiiD SWALL:YIID_ECOLI (SWALL:P32148) (329 aa) fasta scores: E(): 1.6e-108, 82.31% id in 311 aa, and to Salmonella typhimurium, and Salmonella typhi  acetyltransferase YiiD SWALL:Q8XF59 (EMBL:AE008888) (329 aa) fasta scores: E(): 2.7e-107, 81.34% id in 311 aa
YP_048164.1	Similar to Yersinia pestis possible exported protein ypo0033 SWALL:Q8ZJQ9 (EMBL:AJ414141) (569 aa) fasta scores: E(): 1.9e-128, 55.37% id in 558 aa, and to Escherichia coli O6 hypothetical protein YicH SWALL:AAN82916 (EMBL:AE016769) (577 aa) fasta scores: E(): 5.3e-123, 48.92% id in 558 aa
YP_048165.1	Similar to Yersinia pestis  membrane permease ypo0034 SWALL:Q8ZJQ8 (EMBL:AJ414141) (461 aa) fasta scores: E(): 1.8e-149, 86.98% id in 461 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7  purine permease YicE SWALL:YICE_ECOLI (SWALL:P27432) (463 aa) fasta scores: E(): 3.4e-148, 85.65% id in 460 aa
YP_048166.1	catalyzes branch migration in Holliday junction intermediates
YP_048167.1	specifically modifies tRNA at position G18
YP_048168.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri guanosine-3',5'-bis(diphosphate) 3'- pyrophosphohydrolase SpoTor b3650 or z5076 or ecs4525 or sf3690 SWALL:SPOT_ECOLI (SWALL:P17580) (702 aa) fasta scores: E(): 0, 90.74% id in 702 aa
YP_048169.1	promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_048170.1	Essential for recycling GMP and indirectly, cGMP
YP_048171.1	No significant database matches.
YP_048172.1	this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+
YP_048173.1	catalyzes the addition of a phosphoethanolamine group to the outer Kdo residue of lipopolysaccharide
YP_048174.1	Similar to Salmonella typhimurium resistance to complement killing Rck or pslt009 SWALL:Q04817 (EMBL:L08613) (185 aa) fasta scores: E(): 7.9e-27, 44.68% id in 188 aa, and to Salmonella typhimurium virulence membrane protein PagC precursor or stm1246 SWALL:PAGC_SALTY (SWALL:P23988) (185 aa) fasta scores: E(): 3.5e-26, 45.05% id in 182 aa
YP_048175.1	Similar to Escherichia coli Rtn protein or b2176 SWALL:RTN_ECOLI (SWALL:P76446) (518 aa) fasta scores: E(): 6.1e-42, 30.6% id in 513 aa, and to Salmonella typhi  Rtn protein sty0376 SWALL:Q8Z923 (EMBL:AL627266) (524 aa) fasta scores: E(): 1.8e-67, 35.68% id in 524 aa. In E.coli it's found to be involved in resistance to phages N4 and lambda.
YP_048176.1	Similar to Yersinia pestis hypothetical protein Ypo3966 SWALL:Q8ZA52 (EMBL:AJ414160) (398 aa) fasta scores: E(): 6.5e-123, 79.74% id in 395 aa, and to Salmonella typhi  exported protein sty4215 SWALL:Q8Z267 (EMBL:AL627281) (400 aa) fasta scores: E(): 1.4e-118, 75.94% id in 395 aa
YP_048177.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 low-affinity inorganic phosphate transporter 1 PitA or Pit or b3493 or c4291 or z4893 or ecs4365 SWALL:PITA_ECOLI (SWALL:P37308) (499 aa) fasta scores: E(): 1.3e-136, 70.37% id in 503 aa
YP_048178.1	ppGpp-dependent, membrane associated, stress protein produced under conditions of nutrient deprivation, osmotic shock and oxidative stress
YP_048179.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri universal stress protein A UspA or b3495 or c4293 or z4895 or ecs4367 or sf3526 SWALL:USPA_ECOLI (SWALL:P28242) (143 aa) fasta scores: E(): 6.7e-47, 94.36% id in 142 aa
YP_048180.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_048181.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa4186 SWALL:Q9HWJ5 (EMBL:AE004835) (439 aa) fasta scores: E(): 1.9e-60, 39.58% id in 432 aa
YP_048182.1	Similar to Vibrio cholerae 2`,3`-cyclic-nucleotide 2`-phosphodiesterase,  vc2416 SWALL:Q9KPF2 (EMBL:AE004311) (634 aa) fasta scores: E(): 9.2e-161, 66.4% id in 634 aa
YP_048183.1	predicted SAM-dependent methyltransferase
YP_048184.1	Similar to Escherichia coli oligopeptidase A PrlC or OpdA or b3498 SWALL:OPDA_ECOLI (SWALL:P27298) (680 aa) fasta scores: E(): 0, 85.44% id in 680 aa
YP_048185.1	Similar to Bordetella avium BhuR SWALL:Q8L1U7 (EMBL:AY095952) (855 aa) fasta scores: E(): 8.3e-14, 23.68% id in 874 aa, and to Pasteurella multocida HemR SWALL:Q9CN63 (EMBL:AE006093) (742 aa) fasta scores: E(): 1.5e-143, 51.04% id in 717 aa
YP_048186.1	Similar to Escherichia coli probable RNA polymerase sigma factor FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 2.2e-25, 46.38% id in 166 aa
YP_048187.1	Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.1e-33, 36.04% id in 319 aa
YP_048188.1	Similar to Yersinia pestis  membrane protein ypo3918 SWALL:Q8ZA93 (EMBL:AJ414159) (267 aa) fasta scores: E(): 1.7e-17, 34.7% id in 268 aa, and to Shigella flexneri, and Escherichia coli CjrB SWALL:Q933Q6 (EMBL:AF283292) (258 aa) fasta scores: E(): 7.9e-14, 30.59% id in 268 aa, and to Pseudomonas putida TonB SWALL:Q93PQ7 (EMBL:AF315582) (243 aa) fasta scores: E(): 1.5e-10, 31.74% id in 252 aa
YP_048189.1	Similar to Shigella flexneri conserved hypothetical protein YghW SWALL:AAN44523 (EMBL:AE015317) (95 aa) fasta scores: E(): 3.8e-17, 47.25% id in 91 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YghW SWALL:AAN82179 (EMBL:U28377) (95 aa) fasta scores: E(): 3.8e-17, 47.25% id in 91 aa
YP_048190.1	Similar to Yersinia pestis hypothetical protein ypo3976 SWALL:Q8ZA44 (EMBL:AJ414160) (280 aa) fasta scores: E(): 4.8e-91, 80.35% id in 280 aa, and to Escherichia coli hypothetical protein YhiR SWALL:YHIR_ECOLI (SWALL:P37634) (280 aa) fasta scores: E(): 3.2e-88, 77.85% id in 280 aa
YP_048191.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_048192.1	Similar to Escherichia coli Orf43 protein SWALL:Q9S123 (EMBL:AB024946) (95 aa) fasta scores: E(): 8.3e-33, 89.47% id in 95 aa
YP_048193.1	Similar to Escherichia coli incf plasmid repfib replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 6.4e-27, 87.95% id in 83 aa, and to Escherichia coli Orf44 protein SWALL:Q9S122 (EMBL:AB024946) (83 aa) fasta scores: E(): 8.8e-27, 87.95% id in 83 aa
YP_048194.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2033 SWALL:Q9I282 (EMBL:AE004629) (302 aa) fasta scores: E(): 7.3e-48, 46.8% id in 297 aa, and to Corynebacterium glutamicum siderophore-interacting protein cgl0665 SWALL:Q8NSK6 (EMBL:AP005276) (299 aa) fasta scores: E(): 1.9e-29, 37.32% id in 292 aa, and to Escherichia coli hypothetical protein YqjH SWALL:YQJH_ECOLI (SWALL:Q46871) (254 aa) fasta scores: E(): 0.0064, 28.05% id in 303 aa
YP_048195.1	Involved in disulfide bond formation
YP_048196.1	Similar to Caulobacter crescentus efflux protein, LysE family cc0456 SWALL:Q9AAY6 (EMBL:AE005719) (208 aa) fasta scores: E(): 1.4e-42, 56.25% id in 208 aa
YP_048197.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3225 SWALL:Q9HZ15 (EMBL:AE004745) (309 aa) fasta scores: E(): 1.4e-30, 38.11% id in 286 aa, and to Escherichia coli hypothetical transcriptional regulator YeeY SWALL:YEEY_ECOLI (SWALL:P76369) (309 aa) fasta scores: E(): 7.8e-10, 28.34% id in 247 aa
YP_048198.1	Similar to Bacillus subtilis phenolic acid decarboxylase PadC or Pad SWALL:PADC_BACSU (SWALL:O07006) (161 aa) fasta scores: E(): 5.6e-33, 53.16% id in 158 aa, and to Vibrio cholerae probable phenolic acid decarboxylase PadC or vc2240 SWALL:PADC_VIBCH (SWALL:Q9KPX2) (174 aa) fasta scores: E(): 3.2e-46, 63.41% id in 164 aa
YP_048199.1	Similar to Corynebacterium glutamicum hypothetical protein Cgl2435 SWALL:Q8NMX8 (EMBL:AP005281) (411 aa) fasta scores: E(): 1e-33, 40.97% id in 288 aa, and to Corynebacterium efficiens conserved hypothetical protein ce2330 SWALL:BAC19140 (EMBL:AP005222) (414 aa) fasta scores: E(): 1.4e-33, 33.97% id in 418 aa
YP_048200.1	Similar to Bradyrhizobium japonicum Bll6902 protein SWALL:BAC52167 (EMBL:AP005960) (378 aa) fasta scores: E(): 3.4e-73, 58.99% id in 339 aa, and to Bradyrhizobium japonicum LuxA-like protein bll7033 SWALL:BAC52298 (EMBL:AP005960) (408 aa) fasta scores: E(): 3.7e-14, 28.77% id in 358 aa
YP_048201.1	Similar to Corynebacterium glutamicum ABC-type transporter, duplicated ATPase component cgl2436 SWALL:Q8NMX7 (EMBL:AP005281) (547 aa) fasta scores: E(): 8.2e-93, 54.2% id in 535 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YejF SWALL:YEJF_ECOLI (SWALL:P33916) (529 aa) fasta scores: E(): 4.8e-65, 42.8% id in 528 aa
YP_048202.1	Similar to Corynebacterium efficiens  transport protein ce2332 SWALL:BAC19142 (EMBL:AP005222) (305 aa) fasta scores: E(): 2.3e-58, 62.22% id in 270 aa, and to Escherichia coli hypothetical ABC transporter permease protein YliD SWALL:YLID_ECOLI (SWALL:P75799) (303 aa) fasta scores: E(): 1.3e-33, 38.34% id in 266 aa
YP_048203.1	Similar to Corynebacterium glutamicum ABC-type transporter, permease component cgl2438 SWALL:Q8NMX5 (EMBL:AP005281) (313 aa) fasta scores: E(): 3.9e-60, 55.15% id in 301 aa, and to Salmonella typhi hypothetical ABC transporter permease protein YliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 6.1e-30, 36.03% id in 308 aa
YP_048204.1	Similar to Corynebacterium glutamicum ABC-type transporter, periplasmic component cgl2439 SWALL:Q8NMX4 (EMBL:AP005281) (569 aa) fasta scores: E(): 1.1e-87, 47.85% id in 535 aa, and to Corynebacterium efficiens peptide binding protein ce2334 SWALL:BAC19144 (EMBL:AP005222) (615 aa) fasta scores: E(): 1.6e-86, 47.29% id in 535 aa
YP_048205.1	Similar to Pyrococcus abyssi related beta-lactamase precursor Pbp SWALL:Q9V2D6 (EMBL:AJ248283) (447 aa) fasta scores: E(): 2.5e-14, 22.94% id in 340 aa, and to Bacillus cereus alkaline D-peptidase adP SWALL:P94288 (EMBL:D86380) (388 aa) fasta scores: E(): 1.7e-10, 29.52% id in 254 aa
YP_048206.2	Involved in the metabolism of aromatic amino acids
YP_048207.1	No significant database matches. Possible false CDS.
YP_048208.1	Similar to Yersinia pestis methyl-accepting chemotaxis protein II Tar or Tsr SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 4e-72, 42.03% id in 659 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.2e-55, 51.04% id in 384 aa
YP_048209.1	Similar to Yersinia pestis  acetyltransferase ypo4075 SWALL:Q8Z9W4 (EMBL:AJ414160) (151 aa) fasta scores: E(): 1.8e-28, 51.37% id in 146 aa, and to Escherichia coli hypothetical acetyltransferase YiaC SWALL:YIAC_ECOLI (SWALL:P37664) (146 aa) fasta scores: E(): 2.2e-22, 45% id in 140 aa
YP_048210.1	Similar to Escherichia coli DNA-3-methyladenine glycosylase I Tag or b3549 SWALL:3MG1_ECOLI (SWALL:P05100) (187 aa) fasta scores: E(): 3.8e-53, 69.23% id in 182 aa
YP_048211.1	Similar to Pseudomonas putida conserved hypothetical protein pp5143 SWALL:AAN70708 (EMBL:AE016793) (260 aa) fasta scores: E(): 1e-36, 48.3% id in 236 aa
YP_048212.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_048213.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_048214.1	Similar to Yersinia pestis  exported protein ypo4070 SWALL:Q8Z9W8 (EMBL:AJ414160) (241 aa) fasta scores: E(): 1.3e-39, 49.11% id in 226 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YiaF SWALL:AAN45039 (EMBL:U00039) (276 aa) fasta scores: E(): 2.7e-33, 44.09% id in 220 aa
YP_048215.1	Similar to Escherichia coli PTS system, mannitol-specific IIabc component MtlA or b3599 SWALL:PTMA_ECOLI (SWALL:P00550) (637 aa) fasta scores: E(): 1.1e-188, 81.63% id in 637 aa
YP_048216.1	Similar to Escherichia coli mannitol-1-phosphate 5-dehydrogenase MtlD or b3600 SWALL:MTLD_ECOLI (SWALL:P09424) (382 aa) fasta scores: E(): 5.7e-108, 77.48% id in 382 aa
YP_048217.1	Acts as a repressor of the mtlAD operon
YP_048218.1	Similar to Yersinia pestis hypothetical protein ypo4065 SWALL:AAM87627 (EMBL:AJ414160) (118 aa) fasta scores: E(): 6.1e-24, 67.52% id in 117 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YibL SWALL:YIBL_ECOLI (SWALL:P36564) (120 aa) fasta scores: E(): 2.8e-21, 63.63% id in 121 aa
YP_048219.1	Similar to Yersinia pestis methyl-accepting chemotaxis protein II Tar or Tsr SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 2.3e-112, 57.98% id in 626 aa, and to Escherichia coli methyl-accepting chemotaxis protein III Trg SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 5.9e-56, 55.47% id in 393 aa
YP_048220.1	SodA; manganese binding; only present under aerobic conditions; destroys free radicals
YP_048221.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_048222.1	Similar to Escherichia coli aldehyde dehydrogenase B AldB or b3588 SWALL:ALDB_ECOLI (SWALL:P37685) (512 aa) fasta scores: E(): 1.4e-172, 83.2% id in 500 aa
YP_048223.1	Similar to Yersinia pestis  membrane protein ypo4045 SWALL:Q8Z9Y6 (EMBL:AJ414160) (330 aa) fasta scores: E(): 6.6e-88, 65.16% id in 333 aa, and to Escherichia coli hypothetical protein YiaH SWALL:YIAH_ECOLI (SWALL:P37669) (331 aa) fasta scores: E(): 5.3e-74, 56.49% id in 331 aa
YP_048224.1	Similar to Escherichia coli xylulose kinase XylB SWALL:XYLB_ECOLI (SWALL:P09099) (484 aa) fasta scores: E(): 7.7e-141, 73.81% id in 485 aa
YP_048225.1	catalyzes the interconversion of D-xylose to D-xylulose
YP_048226.1	periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity
YP_048227.1	with XylFH is part of the high affinity xylose ABC transporter
YP_048228.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri xylose transport system permease protein XylH SWALL:XYLH_ECOLI (SWALL:P37389) (393 aa) fasta scores: E(): 3.6e-116, 82.39% id in 392 aa
YP_048229.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 xylose operon regulatory protein XylR SWALL:XYLR_ECOLI (SWALL:P37390) (392 aa) fasta scores: E(): 2.5e-127, 81.02% id in 390 aa
YP_048230.1	Similar to Salmonella typhimurium  intracellular protease/amidase AraH or stm1931 SWALL:Q8ZNU7 (EMBL:AE008786) (185 aa) fasta scores: E(): 1.4e-44, 64.86% id in 185 aa, and to Yersinia pestis Thij/Pfpi-family thiamine biogenesis protein ypo0845 SWALL:Q8ZHP5 (EMBL:AJ414145) (192 aa) fasta scores: E(): 1.8e-29, 47.59% id in 187 aa
YP_048231.1	No significant database matches. Possible false CDS.
YP_048232.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_048233.1	Similar to Erwinia carotovora autoinducer synthesis protein CarI or HslI SWALL:CARI_ERWCA (SWALL:P33880) (216 aa) fasta scores: E(): 1.1e-85, 97.22% id in 216 aa, and to Erwinia carotovora autoinducer synthesis protein ExpI SWALL:EXPI_ERWCA (SWALL:P33882) (217 aa) fasta scores: E(): 9.2e-65, 72.94% id in 207 aa, and to Erwinia chrysanthemi AhlI SWALL:Q8KUJ8 (EMBL:AF448800) (212 aa) fasta scores: E(): 6.5e-54, 62.26% id in 212 aa
YP_048234.1	Similar to Pectobacterium carotovorum subsp. betavasculorum LuxR homolog EcbR SWALL:O30346 (EMBL:AF001050) (242 aa) fasta scores: E(): 3.8e-85, 93.38% id in 242 aa, and to Erwinia chrysanthemi transcriptional activator protein EchR SWALL:ECHR_ERWCH (SWALL:Q46967) (250 aa) fasta scores: E(): 3.6e-54, 58.61% id in 244 aa, and to Erwinia carotovora transcriptional activator protein ExpR SWALL:EXPR_ERWCA (SWALL:Q47189) (245 aa) fasta scores: E(): 1.5e-56, 61.57% id in 244 aa. Also similar to ECA1561 (67.839%% in 199 aa overlap)
YP_048235.1	Similar to Erwinia chrysanthemi pectinesterase B precursor PemB SWALL:PMEB_ERWCH (SWALL:Q47474) (433 aa) fasta scores: E(): 8.6e-100, 65.48% id in 394 aa, and to Erwinia carotovora pectinesterase b pemB SWALL:PMEB_ERWCA (SWALL:P55743) (178 aa) fasta scores: E(): 7.6e-61, 91.47% id in 176 aa
YP_048236.2	Similar to Shigella flexneri conserved hypothetical protein YdgC SWALL:AAN43211 (EMBL:AE015184) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YdgC SWALL:YDGC_ECOLI (SWALL:P52110) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa
YP_048237.1	Similar to Escherichia coli O6 hypothetical protein c1689 SWALL:AAN80156 (EMBL:AE016760) (347 aa) fasta scores: E(): 6e-85, 68.73% id in 323 aa, and to Yersinia pestis hypothetical y2334 SWALL:AAM85893 (EMBL:AE013835) (179 aa) fasta scores: E(): 2.2e-47, 73.83% id in 172 aa
YP_048238.1	Similar to Yersinia pestis hypothetical protein SWALL:AAM85892 (EMBL:AL031866) (338 aa) fasta scores: E(): 1.2e-77, 59.64% id in 342 aa, and to Escherichia coli O6 hypothetical protein YbjS SWALL:AAN80157 (EMBL:AE016760) (338 aa) fasta scores: E(): 9.2e-76, 58.43% id in 332 aa, and to Yersinia pestis  nucleotide di-p-sugar epimerase or dehydratase y2825 SWALL:AAM86376 (EMBL:AE013886) (341 aa) fasta scores: E(): 8.4e-58, 48.19% id in 332 aa
YP_048239.1	Similar to Escherichia coli O6  GumP homolog c1691 SWALL:AAN80158 (EMBL:AE016760) (268 aa) fasta scores: E(): 3.6e-70, 63.43% id in 268 aa, and to Yersinia pestis hypothetical y2332 SWALL:AAM85891 (EMBL:AE013835) (283 aa) fasta scores: E(): 2.2e-69, 62.68% id in 268 aa, and to Xanthomonas axonopodis GumP protein SWALL:Q8PJG2 (EMBL:AE011897) (282 aa) fasta scores: E(): 8.9e-25, 35.71% id in 266 aa
YP_048240.1	Similar to Yersinia pestis  coenzyme synthetase ypo1981 SWALL:Q8ZF14 (EMBL:AJ414150) (428 aa) fasta scores: E(): 3.7e-117, 67.37% id in 423 aa, and to Escherichia coli O6 hypothetical protein c1692 SWALL:AAN80159 (EMBL:AE016760) (428 aa) fasta scores: E(): 1.3e-111, 65.48% id in 423 aa
YP_048241.1	Similar to Escherichia coli O6 hypothetical protein c1693 SWALL:AAN80160 (EMBL:AE016760) (204 aa) fasta scores: E(): 5.5e-40, 58.69% id in 184 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0404 SWALL:Q8XSR3 (EMBL:AL646078) (220 aa) fasta scores: E(): 9.5e-09, 31.25% id in 208 aa
YP_048242.1	Similar to Escherichia coli O6 hypothetical protein c1694 SWALL:AAN80161 (EMBL:AE016760) (374 aa) fasta scores: E(): 9.6e-86, 56.09% id in 369 aa
YP_048243.1	Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 7.8e-66, 45.87% id in 364 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.5e-18, 28.49% id in 365 aa
YP_048244.1	Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 4.1e-77, 54.33% id in 346 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.3e-20, 28.57% id in 364 aa
YP_048245.1	Similar to Xanthomonas axonopodis hypothetical protein Xac2610 SWALL:Q8PJC5 (EMBL:AE011901) (267 aa) fasta scores: E(): 6.7e-11, 30.18% id in 159 aa, and to Yersinia pestis  exported protein ypo0702 or y3476 SWALL:AAM87024 (EMBL:AJ414144) (331 aa) fasta scores: E(): 0.00098, 27.43% id in 113 aa
YP_048246.1	NAD-linked
YP_048247.1	flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration
YP_048248.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2651 SWALL:Q9I0I7 (EMBL:AE004694) (352 aa) fasta scores: E(): 9e-64, 51.32% id in 339 aa, and to Brucella suis membrane protein,  bra0460 SWALL:AAN33654 (EMBL:AE014544) (352 aa) fasta scores: E(): 1.5e-54, 44.5% id in 346 aa
YP_048249.1	Similar to Pasteurella multocida hypothetical protein Pm1636 SWALL:Q9CKI1 (EMBL:AE006200) (121 aa) fasta scores: E(): 1.9e-09, 30.7% id in 114 aa, and to Xylella fastidiosa hypothetical protein Xf2198 SWALL:Q9PBE6 (EMBL:AE004033) (133 aa) fasta scores: E(): 1.4e-05, 36.14% id in 83 aa
YP_048250.1	No significant database matches.
YP_048251.1	No significant database matches.
YP_048252.1	No significant database matches.
YP_048253.1	Similar to Anabaena sp. hypothetical protein Asr3468 asr3468 SWALL:Q8YRH9 (EMBL:AP003593) (83 aa) fasta scores: E(): 0.99, 34.28% id in 70 aa
YP_048254.1	Similar to Escherichia coli O6 hypothetical protein c5295 SWALL:AAN83716 (EMBL:AE016771) (163 aa) fasta scores: E(): 3.3e-09, 43.82% id in 89 aa
YP_048255.1	Similar to Escherichia coli O6 hypothetical protein c5297 SWALL:AAN83718 (EMBL:AE016771) (203 aa) fasta scores: E(): 3.7e-34, 50.25% id in 199 aa, and to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 8.3e-14, 27.5% id in 429 aa
YP_048256.1	No significant database matches.
YP_048257.1	Similar to Vibrio cholerae deoxycytidylate deaminase-related protein vc0175 SWALL:Q9KVH1 (EMBL:AE004108) (532 aa) fasta scores: E(): 1.2e-25, 37.32% id in 509 aa, and to Listeria monocytogenes competence protein SWALL:Q8RT79 (EMBL:AF468456) (176 aa) fasta scores: E(): 7.7e-05, 41.42% id in 70 aa
YP_048258.1	Similar to Yersinia pestis hypothetical protein ypo0043 SWALL:AAM83692 (EMBL:AJ414141) (287 aa) fasta scores: E(): 5.3e-83, 86.76% id in 287 aa, and to Escherichia coli protein YicC SWALL:YICC_ECOLI (SWALL:P23839) (287 aa) fasta scores: E(): 8e-82, 85.01% id in 287 aa
YP_048259.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa5085 SWALL:Q9HU98 (EMBL:AE004921) (318 aa) fasta scores: E(): 9.5e-27, 36.15% id in 307 aa, and to Salmonella typhimurium, and Salmonella typhi positive transcriptional regulator LysR SWALL:Q8XGD5 (EMBL:AE008838) (311 aa) fasta scores: E(): 1.8e-15, 26.66% id in 300 aa, and to Escherichia coli transcriptional activator protein LysR SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 3.2e-13, 27.79% id in 277 aa
YP_048260.1	Similar to Arabidopsis thaliana L-asparaginase at5g08100 or t22d6_40 SWALL:ASPG_ARATH (SWALL:P50287) (315 aa) fasta scores: E(): 7.9e-38, 44.22% id in 303 aa, and to Escherichia coli  L-asparaginase precursor ybik or b0828 SWALL:ASGX_ECOLI (SWALL:P37595) (321 aa) fasta scores: E(): 3.2e-73, 65.39% id in 315 aa
YP_048261.1	Similar to Ralstonia solanacearum hypothetical protein rsc1384 SWALL:Q8XZL1 (EMBL:AL646064) (271 aa) fasta scores: E(): 4.5e-37, 43.49% id in 269 aa, and to Bacillus subtilis dipeptide transport protein DppA or DciaA SWALL:DPPA_BACSU (SWALL:P26902) (274 aa) fasta scores: E(): 9.7e-19, 32.84% id in 274 aa
YP_048262.1	Similar to Rhizobium loti probable D-aminopeptidase mlr2477 SWALL:Q98IB6 (EMBL:AP002999) (343 aa) fasta scores: E(): 8.8e-55, 52.74% id in 328 aa
YP_048263.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa
YP_048264.1	Similar to Escherichia coli hypothetical ABC transporter permease protein ylic or b0831 SWALL:YLIC_ECOLI (SWALL:P75798) (306 aa) fasta scores: E(): 4.3e-64, 52.94% id in 306 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1381 or rs04750 SWALL:Q8XZL4 (EMBL:AL646064) (307 aa) fasta scores: E(): 5.6e-63, 54.6% id in 304 aa
YP_048265.1	Similar to Salmonella typhi  ABC transporter periplasmic binding protein YliB SWALL:Q8Z863 (EMBL:AL627268) (512 aa) fasta scores: E(): 1e-78, 41% id in 517 aa, and to Escherichia coli  binding protein YliB precursor SWALL:YLIB_ECOLI (SWALL:P75797) (512 aa) fasta scores: E(): 5.5e-78, 42.3% id in 513 aa
YP_048266.1	Similar to Salmonella typhimurium  ATPase components of ABC-type transport system, containing duplicated atpase domain YliA SWALL:Q8ZQM4 (EMBL:AE008735) (623 aa) fasta scores: E(): 1.3e-118, 57% id in 607 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YliA SWALL:YLIA_ECOLI (SWALL:P75796) (629 aa) fasta scores: E(): 5.6e-117, 55.66% id in 609 aa
YP_048267.1	Similar to Escherichia coli O6 hypothetical protein YcjG SWALL:AAN80263 (EMBL:AE016760) (335 aa) fasta scores: E(): 6.9e-54, 47.35% id in 321 aa, and to Yersinia pestis mandelate racemase / muconate lactonizing protein ypo2341 SWALL:Q8ZE43 (EMBL:AJ414152) (324 aa) fasta scores: E(): 5.4e-52, 47.33% id in 319 aa
YP_048268.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_048269.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_048270.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_048271.1	catalyzes the formation of dUMP from dUTP
YP_048272.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_048273.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_048274.1	required for 70S ribosome assembly
YP_048275.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_048276.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_048277.1	Similar to Yersinia pestis  sugar transferase RafQ SWALL:Q8ZJC7 (EMBL:AJ414141) (326 aa) fasta scores: E(): 8.7e-82, 60.06% id in 323 aa, and to Serratia marcescens heptosyliii transferase WaaQ SWALL:Q9X979 (EMBL:U52844) (337 aa) fasta scores: E(): 7.2e-12, 26.23% id in 343 aa, and to Escherichia coli WaaQ SWALL:Q9R9D5 (EMBL:AF019746) (340 aa) fasta scores: E(): 3.2e-08, 23.25% id in 301 aa
YP_048278.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_048279.1	catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A
YP_048280.1	Similar to Paracoccidioides brasiliensis mannosyltransferase SWALL:Q96WZ3 (EMBL:AF374353) (357 aa) fasta scores: E(): 0.00027, 26.86% id in 201 aa, and to Pasteurella piscicida capsular polysaccharide SWALL:Q8VW69 (EMBL:AB074290) (315 aa) fasta scores: E(): 1, 22.46% id in 187 aa
YP_048281.1	Similar to Serratia marcescens lipopolysaccharide core biosynthesis glycosyl transferase KdtX SWALL:KDTX_SERMA (SWALL:Q54435) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa, and to Yersinia enterocolitica glucosyl-transferase WaaE SWALL:Q8RSW8 (EMBL:AY075041) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa
YP_048282.1	Similar to Edwardsiella tarda beta1,4-galactosyltransferase WaaX SWALL:AAL82722 (EMBL:AY078508) (251 aa) fasta scores: E(): 9.1e-32, 40.96% id in 249 aa, and to Escherichia coli beta1,4-galactosyltransferase WaaX SWALL:Q9ZIS2 (EMBL:AF019747) (257 aa) fasta scores: E(): 2.4e-09, 26.89% id in 264 aa
YP_048283.1	Doubtful CDS. No significant database matches
YP_048284.1	No significant database matches.
YP_048285.1	Similar to Escherichia coli lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or b3626 SWALL:RFAJ_ECOLI (SWALL:P27129) (338 aa) fasta scores: E(): 4.4e-63, 49.69% id in 330 aa, and to Salmonella typhimurium lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or stm3717 SWALL:RFAJ_SALTY (SWALL:P19817) (336 aa) fasta scores: E(): 5.6e-66, 53.98% id in 326 aa
YP_048286.1	Similar to Escherichia coli lipopolysaccharide 1,3-galactosyltransferase RfaI or WaaI or b3627 SWALL:RFAI_ECOLI (SWALL:P27128) (339 aa) fasta scores: E(): 7.7e-60, 44.21% id in 337 aa, and to Salmonella typhimurium lipopolysaccharide 1,3-galactosyltransferase RfaI or WaaI or stm3718 SWALL:RFAI_SALTY (SWALL:P19816) (337 aa) fasta scores: E(): 2e-64, 48.21% id in 336 aa
YP_048287.1	Similar to Escherichia coli lipopolysaccharide core biosynthesis protein Rfag or WaaG or pcsa or b3631 SWALL:RFAG_ECOLI (SWALL:P25740) (374 aa) fasta scores: E(): 1.2e-87, 58.69% id in 368 aa, and to Salmonella typhimurium lipopolysaccharide core biosynthesis protein Rfag or WaaG or stm3722 SWALL:O68269 (EMBL:AF026386) (374 aa) fasta scores: E(): 1.5e-89, 60.05% id in 368 aa
YP_048288.1	Similar to Escherichia coli lipopolysaccharide core biosynthesis glycosyl transferase RfaQ or WaaQ or b3632 SWALL:RFAQ_ECOLI (SWALL:P25742) (344 aa) fasta scores: E(): 1.3e-65, 52.69% id in 334 aa, and to Salmonella typhimurium lipopolysaccharide core biosynthesis, modification of heptose region of core RfaQ or stm3723 SWALL:O68270 (EMBL:AF026386) (344 aa) fasta scores: E(): 1.2e-64, 51.79% id in 334 aa
YP_048289.1	Similar to Escherichia coli O-antigen ligase RfaL or WaaL or b3622 SWALL:RFAL_ECOLI (SWALL:P27243) (419 aa) fasta scores: E(): 2.7e-28, 30.54% id in 406 aa. Also similar to ECA0162 (36.735% id. in 392 aa overlap)
YP_048290.1	Similar to Escherichia coli O-antigen ligase RfaL or WaaL or b3622 SWALL:RFAL_ECOLI (SWALL:P27243) (419 aa) fasta scores: E(): 1.2e-28, 29.22% id in 414 aa, and to Serratia marcescens lipid a core:surface polymer ligase WaaL SWALL:Q936B4 (EMBL:U52844) (413 aa) fasta scores: E(): 1.1e-39, 33.76% id in 385 aa. Also similar to ECA0161 (36.735% id. in 392 aa overlap)
YP_048291.1	Similar to Escherichia coli lipopolysaccharide heptosyltransferase-1 RfaC or WaaC or Rfa-2 or b3621 SWALL:RFAC_ECOLI (SWALL:P24173) (319 aa) fasta scores: E(): 6.6e-89, 71.47% id in 319 aa, and to Serratia marcescens heptosyltransferase i WaaC SWALL:Q936B6 (EMBL:U52844) (321 aa) fasta scores: E(): 8.9e-98, 76.25% id in 320 aa
YP_048292.1	catalyzes the transfer of the second heptose to the heptosyl-KDO2 moiety of the lipopolysaccharide inner core
YP_048293.1	catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose
YP_048294.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_048295.1	converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism
YP_048296.1	Similar to Salmonella typhimurium  periplasmic protein YigQ or stm3706 SWALL:Q8ZL54 (EMBL:AE008872) (320 aa) fasta scores: E(): 3.9e-70, 66.01% id in 306 aa, and to Escherichia coli hypothetical protein YibQ precursor SWALL:YIBQ_ECOLI (SWALL:P37691) (319 aa) fasta scores: E(): 3.1e-68, 66.55% id in 293 aa
YP_048297.1	Similar to Yersinia pestis  membrane protein y0078 SWALL:AAM83673 (EMBL:AE013608) (456 aa) fasta scores: E(): 2.5e-78, 71.87% id in 416 aa, and to Salmonella typhi hypothetical protein Sty4090 SWALL:Q8Z2F1 (EMBL:AL627280) (427 aa) fasta scores: E(): 9.5e-72, 67.49% id in 403 aa, and to Escherichia coli hypothetical protein YibP SWALL:YIBP_ECOLI (SWALL:P37690) (419 aa) fasta scores: E(): 3.5e-71, 66.5% id in 403 aa
YP_048298.1	Similar to Yersinia pestis  membrane protein ypo0065 SWALL:Q8ZJM9 (EMBL:AJ414141) (144 aa) fasta scores: E(): 1.2e-36, 69.78% id in 139 aa, and to Salmonella typhimurium, and Salmonella typhi YibN SWALL:Q8XEX1 (EMBL:AE008872) (143 aa) fasta scores: E(): 6e-34, 67.62% id in 139 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YibN SWALL:YIBN_ECOLI (SWALL:P37688) (143 aa) fasta scores: E(): 1.8e-33, 66.18% id in 139 aa
YP_048299.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_048300.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_048301.1	catalyzes the O-acetylation of serine
YP_048302.1	catalyzes the transfer of palmitate to lipid A
YP_048303.1	Similar to Yersinia pestis hypothetical protein ypo2962 SWALL:Q8ZCM0 (EMBL:AJ414154) (161 aa) fasta scores: E(): 2e-36, 56.6% id in 159 aa, and to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 4.5e-35, 55.34% id in 159 aa
YP_048304.1	Similar to Escherichia coli O6 hypothetical protein c3766 SWALL:AAN82210 (EMBL:AE016766) (245 aa) fasta scores: E(): 1.6e-60, 62.39% id in 234 aa. No other database matches.
YP_048305.1	Similar to Escherichia coli hypothetical protein YgiZ SWALL:YGIZ_ECOLI (SWALL:Q46867) (110 aa) fasta scores: E(): 4.5e-13, 38.88% id in 108 aa
YP_048306.1	Similar to Yersinia pestis  membrane protein ypo3790 SWALL:Q8ZAL1 (EMBL:AJ414159) (299 aa) fasta scores: E(): 2.1e-95, 75.08% id in 297 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical membrane protein YigM SWALL:YIGM_ECOLI (SWALL:P27849) (299 aa) fasta scores: E(): 2.9e-81, 65.31% id in 297 aa
YP_048307.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional activator protein MetR or b3828 or z5349 or ecs4758 or sf3906 SWALL:METR_ECOLI (SWALL:P19797) (317 aa) fasta scores: E(): 7.2e-105, 85.8% id in 310 aa
YP_048308.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_048309.1	Similar to Salmonella typhi methyl-accepting chemotaxis protein II CheM SWALL:Q8Z3M1 (EMBL:AL627278) (522 aa) fasta scores: E(): 6.8e-69, 46.3% id in 514 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or Ched SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 3.5e-50, 41.89% id in 549 aa
YP_048310.1	Similar to Salmonella typhi methyl-accepting chemotaxis protein II CheM SWALL:Q8Z3M1 (EMBL:AL627278) (522 aa) fasta scores: E(): 2.2e-70, 47.66% id in 514 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or Ched SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.2e-52, 42.03% id in 559 aa
YP_048311.1	Similar to Pseudomonas putida, and Pseudomonas sp. carboxymethylenebutenolidase ClcD SWALL:CLCD_PSEPU (SWALL:P11453) (236 aa) fasta scores: E(): 2.2e-10, 28.31% id in 226 aa, and to Escherichia coli carboxymethylenebutenolidase YsgA or b3830 SWALL:DLHH_ECOLI (SWALL:P56262) (271 aa) fasta scores: E(): 2.4e-74, 67.03% id in 273 aa
YP_048312.1	catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway
YP_048313.1	Similar to Yersinia pestis hypothetical protein ypo3785 or y0445 SWALL:AAM84034 (EMBL:AJ414158) (276 aa) fasta scores: E(): 7.8e-34, 58.9% id in 275 aa
YP_048314.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_048315.1	Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.9e-43, 32.79% id in 436 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.4e-43, 31.15% id in 459 aa
YP_048316.1	Similar to Escherichia coli RspA or b1581 SWALL:RSPA_ECOLI (SWALL:P38104) (404 aa) fasta scores: E(): 1e-20, 36.07% id in 402 aa, and to Streptomyces coelicolor SpaA or sco7629 or sc10f4.02 SWALL:P95726 (EMBL:X94190) (413 aa) fasta scores: E(): 6.1e-23, 39.03% id in 415 aa. Also similar to ECA0917 (starvation sensing protein, RspA) (36.070% id. in 402 aa overlap)
YP_048317.1	Similar to Bacillus halodurans transcriptional regulator bh3917 SWALL:Q9K616 (EMBL:AP001520) (261 aa) fasta scores: E(): 6.3e-11, 26.81% id in 220 aa, and to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 1.8e-09, 26.81% id in 220 aa
YP_048318.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis
YP_048319.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_048320.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_048321.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_048322.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA recombination protein RmuC or b3832 or z5354 or ecs4762 or sf3910 SWALL:RMUC_ECOLI (SWALL:P27850) (475 aa) fasta scores: E(): 3.2e-96, 72.13% id in 427 aa
YP_048323.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ubiquinone/menaquinone biosynthesis methyltransferase UbiE or b3833 or z5355 or ecs4763 or sf3911 SWALL:UBIE_ECOLI (SWALL:P27851) (251 aa) fasta scores: E(): 4.5e-76, 78.88% id in 251 aa
YP_048324.1	Similar to Yersinia pestis hypothetical protein ypo3780 SWALL:Q8ZAM0 (EMBL:AJ414158) (210 aa) fasta scores: E(): 1.8e-42, 56.65% id in 203 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YigP SWALL:YIGP_ECOLI (SWALL:P27852) (201 aa) fasta scores: E(): 1.2e-35, 48.78% id in 205 aa
YP_048325.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_048326.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sec-independent protein translocase protein TatA or MttA1 or b3836 or c4785 or z5358 or ecs4766 or sf3914 SWALL:TATA_ECOLI (SWALL:O65938) (89 aa) fasta scores: E(): 2.5e-17, 64.83% id in 91 aa
YP_048327.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri sec-independent protein translocase protein TatB or MttA2 or b3838 or z5359 or ecs4767 or sf3915 SWALL:TATB_ECOLI (SWALL:O69415) (171 aa) fasta scores: E(): 4.4e-22, 52.82% id in 195 aa
YP_048328.1	with TatABE forms the twin-arginine translocation complex which is involved in the transport of proteins across the cytoplasmic membrane
YP_048329.1	magnesium dependent; not involved in the Sec-independent protein export system
YP_048330.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_048331.1	Similar to Erwinia chrysanthemi transcriptional activator RfaH SWALL:Q9ZEL8 (EMBL:AJ132239) (162 aa) fasta scores: E(): 9.6e-51, 81.48% id in 134 aa, and to Escherichia coli, and Escherichia coli O157:H7 transcriptional activator RfaH or HlyT or SfrB or b3842 or z5362 or ecs4770 SWALL:RFAH_ECOLI (SWALL:P26614) (162 aa) fasta scores: E(): 1.2e-43, 69.57% id in 161 aa.
YP_048332.1	catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol
YP_048333.1	NAD(P)H-flavin reductase; catalyzes the reversible oxidation/reduction of NAD(P) and flavine mononucleotide; in Salmonella and E. coli this protein also reduces aquacob(III)alamin to cob(II)alamin
YP_048334.1	FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_048335.1	includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids
YP_048336.1	catalyzes the hydrolysis of dipeptides with a proline at the C-terminal; also catalyzes the low efficiency hydrolysis of organophosphate di- and tri-esters
YP_048337.1	Similar to Escherichia coli O157:H7 hypothetical protein YigZ SWALL:Q8X8I0 (EMBL:AE005615) (205 aa) fasta scores: E(): 1.9e-44, 63.86% id in 202 aa, and to Escherichia coli hypothetical protein YigZ SWALL:YIGZ_ECOLI (SWALL:P27862) (204 aa) fasta scores: E(): 2.9e-44, 63.86% id in 202 aa
YP_048338.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri Trk system potassium uptake protein TrkH or b3849 or z5371 or ecs4777 or sf3925 SWALL:TRKH_ECOLI (SWALL:P21166) (483 aa) fasta scores: E(): 2e-172, 89.02% id in 483 aa
YP_048339.1	catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX
YP_048340.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_048341.1	catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon
YP_048342.1	catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis
YP_048343.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_048344.1	forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_048345.1	Modulates Rho-dependent transcription termination
YP_048346.1	binds directly to 23S ribosomal RNA
YP_048347.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_048348.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_048349.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_048350.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_048351.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_048352.1	Similar to Escherichia coli shikimate transporter ShiA or b1981 SWALL:SHIA_ECOLI (SWALL:P76350) (438 aa) fasta scores: E(): 4.7e-125, 73.57% id in 420 aa
YP_048353.1	Similar to Escherichia coli hypothetical protein YjiS SWALL:YJIS_ECOLI (SWALL:P39390) (54 aa) fasta scores: E(): 6.1e-06, 44.44% id in 63 aa
YP_048354.1	Similar to Pseudomonas putida transcriptional regulator, GntR family pp5275 SWALL:AAN70840 (EMBL:AE016793) (496 aa) fasta scores: E(): 2.2e-120, 61% id in 477 aa, and to Escherichia coli hypothetical protein YjiR SWALL:YJIR_ECOLI (SWALL:P39389) (470 aa) fasta scores: E(): 4.1e-118, 60.55% id in 469 aa
YP_048355.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center
YP_048356.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_048357.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_048358.1	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate
YP_048359.1	catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate
YP_048360.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_048361.1	binds specifically to the major sigma factor sigma 70; active in stationary phase
YP_048362.1	can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates
YP_048363.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_048364.1	Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein YjaG SWALL:YJAG_SALTY (SWALL:Q9L9I2) (196 aa) fasta scores: E(): 2.3e-65, 82.14% id in 196 aa, and to Escherichia coli hypothetical protein YjaG SWALL:YJAG_ECOLI (SWALL:P32680) (196 aa) fasta scores: E(): 3.1e-63, 79.08% id in 196 aa
YP_048365.1	histone-like DNA-binding protein
YP_048366.1	Similar to Yersinia pestis  exported protein ypo3730 SWALL:Q8ZAR1 (EMBL:AJ414158) (233 aa) fasta scores: E(): 7.2e-42, 50.87% id in 230 aa, and to Salmonella typhi hypothetical protein sty3714 SWALL:Q8Z330 (EMBL:AL627279) (230 aa) fasta scores: E(): 3.3e-30, 38.69% id in 230 aa
YP_048367.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_048368.1	involved in de novo purine biosynthesis
YP_048369.1	Similar to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 8.6e-70, 75.1% id in 245 aa, and to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein yhdz yhdz or b3271 SWALL:YHDZ_ECOLI (SWALL:P45769) (252 aa) fasta scores: E(): 7.3e-81, 85.77% id in 253 aa
YP_048370.1	Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapM SWALL:AAPM_RHILV (SWALL:Q52814) (384 aa) fasta scores: E(): 6.9e-63, 51.37% id in 364 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdy or b3270 SWALL:YHDY_ECOLI (SWALL:P45768) (367 aa) fasta scores: E(): 1.4e-116, 81.37% id in 349 aa
YP_048371.1	Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapQ SWALL:AAPQ_RHILV (SWALL:Q52813) (400 aa) fasta scores: E(): 9e-62, 48.04% id in 383 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdx or b3269 SWALL:YHDX_ECOLI (SWALL:P45767) (362 aa) fasta scores: E(): 2.5e-106, 75.77% id in 355 aa
YP_048372.1	Similar to Rhizobium leguminosarum general L-amino acid-binding periplasmic protein AapJ precursor AapJ SWALL:AAPJ_RHILV (SWALL:Q52812) (341 aa) fasta scores: E(): 1.9e-78, 57.72% id in 343 aa, and to Escherichia coli amino-acid ABC transporter binding protein yhdw precursor yhdw or b3268 SWALL:YHDW_ECOLI (SWALL:P45766) (341 aa) fasta scores: E(): 6.6e-115, 84.45% id in 341 aa
YP_048373.1	Similar to Rhizobium meliloti  amino-acid transport system permease ABC transporter protein r03276 SWALL:Q92L15 (EMBL:AL591793) (226 aa) fasta scores: E(): 4.3e-53, 68.8% id in 218 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical amino-acid ABC transporter permease protein YecS SWALL:AAN43512 (EMBL:AE000284) (222 aa) fasta scores: E(): 1.8e-34, 50% id in 218 aa
YP_048374.1	Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.2e-23, 36.01% id in 261 aa, and to Lactobacillus fermentum basic surface protein SWALL:O06530 (EMBL:U97348) (264 aa) fasta scores: E(): 6.2e-28, 37.97% id in 266 aa
YP_048375.1	Similar to Anabaena sp. hypothetical protein Alr2599 alr2599 SWALL:Q8YTW4 (EMBL:AP003590) (131 aa) fasta scores: E(): 1.9e-25, 64.28% id in 112 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YtfH SWALL:YTFH_ECOLI (SWALL:P39316) (126 aa) fasta scores: E(): 3.3e-25, 62.38% id in 109 aa
YP_048376.1	Similar to Ralstonia solanacearum hypothetical protein rsc0616 or rs01517 SWALL:Q8Y1S3 (EMBL:AL646060) (156 aa) fasta scores: E(): 1.2e-33, 66.66% id in 135 aa, and to Xanthomonas axonopodis hypothetical protein Xac0357 SWALL:Q8PQG8 (EMBL:AE011661) (179 aa) fasta scores: E(): 1.2e-15, 42.24% id in 116 aa
YP_048377.1	Similar to Pseudomonas syringae oxidoreductase, aldo/keto reductase family pspto3075 SWALL:Q880S6 (EMBL:AE016867) (350 aa) fasta scores: E(): 1.5e-90, 66.57% id in 350 aa, and to Xanthomonas axonopodis L-fucose dehydrogenase xac0158 SWALL:Q8PR11 (EMBL:AE011640) (349 aa) fasta scores: E(): 6.9e-73, 52.99% id in 351 aa
YP_048378.1	No significant database matches.
YP_048379.1	Similar to Salmonella typhimurium  cytoplasmic protein stm4186 SWALL:Q8ZKL3 (EMBL:AE008895) (135 aa) fasta scores: E(): 1.8e-24, 51.96% id in 127 aa, and to Escherichia coli O157:H7 hypothetical protein Z0414 SWALL:Q8X3L2 (EMBL:AE005211) (136 aa) fasta scores: E(): 7.2e-22, 48.43% id in 128 aa
YP_048380.1	Similar to Bacteriophage P1 death on curing protein Doc SWALL:DOC_BPP1 (SWALL:Q06259) (126 aa) fasta scores: E(): 1.5e-05, 37.61% id in 109 aa, and to Escherichia coli Doc protein Doc SWALL:Q47172 (EMBL:X98141) (126 aa) fasta scores: E(): 1.1e-05, 37.61% id in 109 aa
YP_048381.1	No significant database matches.
YP_048382.1	Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription
YP_048383.1	Similar to Erwinia carotovora Yhdg homolog SWALL:O52539 (EMBL:AF040381) (321 aa) fasta scores: E(): 1.4e-125, 99.37% id in 321 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein Yhdg SWALL:YHDG_ECOLI (SWALL:P25717) (321 aa) fasta scores: E(): 1.6e-111, 87.53% id in 321 aa
YP_048384.1	Similar to Erwinia carotovora carbonic anhydrase precursor Cah SWALL:CAH_ERWCA (SWALL:O52538) (244 aa) fasta scores: E(): 4.3e-93, 95.08% id in 244 aa, and to Neisseria gonorrhoeae carbonic anhydrase precursor Cah SWALL:CAH_NEIGO (SWALL:Q50940) (252 aa) fasta scores: E(): 3.7e-39, 44.44% id in 243 aa
YP_048385.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_048386.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_048387.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_048388.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_048389.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_048390.1	in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme
YP_048391.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_048392.1	Similar to Yersinia pestis probable zinc-binding dehydrogenase ypo3663 SWALL:Q8ZAW8 (EMBL:AJ414158) (325 aa) fasta scores: E(): 2.4e-87, 71.6% id in 324 aa
YP_048393.1	regulates the degradation of the small RNAs CsrB and CsrC; may function to targate RNase E to specific RNA molecules
YP_048394.1	functions in MreBCD complex in some organisms
YP_048395.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_048396.1	part of cell wall structural complex MreBCD; transmembrane component
YP_048397.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_048398.1	involved in the processing of the 5'end of 16S rRNA
YP_048399.1	Similar to Yersinia pestis  exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa
YP_048400.1	responsible for the proteolytic maturation of the E. coli pMccB17 plasmid-encoded microcin B17, an exported protein that targets the essential topoisomerase II DNA gyrase; degrades the E. coli plasmid F-encoded CcdA
YP_048401.1	Similar to Xanthomonas campestris hypothetical protein Xcc1623 SWALL:Q8PA66 (EMBL:AE012263) (199 aa) fasta scores: E(): 1.7e-15, 38.65% id in 194 aa. No other significant database matches
YP_048402.1	No significant database matches.
YP_048403.1	Similar to Serratia marcescens temperature-dependent regulator A TdrA SWALL:Q8VUI0 (EMBL:AB077386) (303 aa) fasta scores: E(): 1.9e-100, 82.5% id in 303 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator yhcs or b3243 or c3998 or z4602 or ecs4116 SWALL:YHCS_ECOLI (SWALL:P45691) (309 aa) fasta scores: E(): 2.1e-97, 80.06% id in 311 aa
YP_048404.1	membrane protein AaeX; the gene is a member of the aaeXAB operon
YP_048405.1	with AaeB forms an efflux pump whose substrates are p-hydroxybenzoic acid, 6-hydroxy-2-naphthoic and 2-hydroxycinnamate
YP_048406.1	with AaeA forms an efflux pump whose substrates are p-hydroxybenzoic acid 6-hydroxy-2-naphthoic and 2-hydroxycinnamate
YP_048407.1	Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 8.3e-102, 55.41% id in 480 aa, and to Photorhabdus luminescens Orf17 SWALL:AAO17183 (EMBL:AF346500) (490 aa) fasta scores: E(): 6e-104, 57.74% id in 478 aa
YP_048408.1	Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa.
YP_048409.1	protease involved in proteolytic processing of the antibiotic Microcin B17 and in sensitivity to the DNA gyrase inhibitor LetD
YP_048410.1	Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation
YP_048411.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri phosphocarrier protein PtsO or Npr or RpoR or b3206 or c3966 or z4569 or ecs4085 or sf3246 SWALL:PTSO_ECOLI (SWALL:P33996) (90 aa) fasta scores: E(): 5.4e-26, 83.33% id in 90 aa
YP_048412.1	Similar to Yersinia pestis hypothetical protein ypo3586SWALL:AAM83752 (EMBL:AJ414157) (284 aa) fasta scores: E(): 2.9e-105, 96.46% id in 283 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein Yhbj SWALL:YHBJ_ECOLI (SWALL:P33995) (284 aa) fasta scores: E(): 9.3e-105, 95.42% id in 284 aa
YP_048413.1	Similar to Escherichia coli, and Shigella flexneri nitrogen regulatory IIA protein PtsN or RpoP SWALL:PTSN_ECOLI (SWALL:P31222) (163 aa) fasta scores: E(): 1.3e-46, 80.12% id in 156 aa, and to Yersinia pestis phosphotransferase system enzyme IIA PtsN SWALL:AAM83751 (EMBL:AE013615) (164 aa) fasta scores: E(): 6.1e-48, 81.01% id in 158 aa
YP_048414.1	YhbH; resting ribosome-binding protein involved in ribosome stabilization and preservation in stationary phase; binds specifically 100S ribosomes (an inactive ribosome product of a 70S ribosome dimerization); seems to be involved in modulation of the sigma(54) (RpoN) activity for quorum sensing
YP_048415.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_048416.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri probable ABC transporter ATP-binding protein YhbG SWALL:AAN44707 (EMBL:D12938) (241 aa) fasta scores: E(): 2.5e-76, 90.87% id in 241 aa, and to Salmonella typhimurium, and Salmonella typhi  ABC superfamily Yhbg SWALL:Q8XFR6 (EMBL:AE008852) (241 aa) fasta scores: E(): 1.1e-75, 90.04% id in 241 aa
YP_048417.1	LptA; periplasmic binding protein part of a  ABC superfamily of uptake transporters; interacts with LptB protein, the ATP binding component of the uptake system
YP_048418.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein YrbK SWALL:Q8XGY6 (EMBL:AE008852) (191 aa) fasta scores: E(): 6e-45, 64.21% id in 190 aa
YP_048419.1	forms homotetramers; catalyzes hydrolysis of KDO 8-P to KDO and inorganic phosphate; functions in lipopolysaccharide biosynthesis
YP_048420.1	Similar to Yersinia pestis hypothetical protein ypo3577 SWALL:Q8ZB48 (EMBL:AJ414157) (328 aa) fasta scores: E(): 2e-101, 81.59% id in 326 aa, and to Escherichia coli hypothetical protein Yrbh SWALL:YRBH_ECOLI (SWALL:P45395) (328 aa) fasta scores: E(): 2e-95, 78.08% id in 324 aa
YP_048421.1	YrbG; inner membrane protein involved in cell envelope integrity; sodium ion/calcium ion exchanger; in E. coli it is non essential for cell viability; member of the YRBG family of cation/Ca2+ exchangers
YP_048422.1	ATP-binding subunit of a  ABC toluene efflux transporter
YP_048423.1	Similar to Yersinia pestis  membrane protein ypo3574 SWALL:Q8ZB51 (EMBL:AJ414157) (260 aa) fasta scores: E(): 1.8e-88, 88.84% id in 260 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YrbE SWALL:AAN44700 (EMBL:U18997) (260 aa) fasta scores: E(): 2.7e-84, 85.38% id in 260 aa
YP_048424.1	Similar to Shigella flexneri VpsC SWALL:Q9RHA1 (EMBL:AF053073) (183 aa) fasta scores: E(): 5.2e-45, 68.64% id in 185 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yrbd precursor yrbd or b3193 or z4556 or ecs4072 SWALL:YRBD_ECOLI (SWALL:P45391) (183 aa) fasta scores: E(): 1.1e-45, 69.18% id in 185 aa. Shigella flexneri VpsC protein is involved in virulence protein secretion
YP_048425.1	Similar to Escherichia coli, and Shigella flexneri protein yrbc precursor yrbc or b3192 or sf3232 SWALL:AAN44698 (EMBL:U18997) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa, and to Shigella flexneri YrbC SWALL:AAF21249 (EMBL:AF053073) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa
YP_048426.1	Similar to Yersinia pestis  anti-sigma B factor antagonist ypo3571 SWALL:Q8ZB54 (EMBL:AJ414157) (100 aa) fasta scores: E(): 3.9e-18, 60.41% id in 96 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yrbb yrbb or b3191 or sf3231 SWALL:YRBB_ECOLI (SWALL:P45389) (97 aa) fasta scores: E(): 4.6e-11, 40.62% id in 96 aa
YP_048427.1	Similar to Yersinia pestis bolA-like protein ypo3570 SWALL:AAM83735 (EMBL:AJ414157) (87 aa) fasta scores: E(): 9.3e-29, 88.09% id in 84 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein YrbA SWALL:YRBA_ECOLI (SWALL:P43781) (84 aa) fasta scores: E(): 2.9e-27, 84.52% id in 84 aa
YP_048428.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_048429.1	Similar to Escherichia coli, and Escherichia coli O157:H7 protease DegS precursor DegS or HhoB or HtrH or b3235 or z4594 or ecs4108 SWALL:DEGS_ECOLI (SWALL:P31137) (355 aa) fasta scores: E(): 9.1e-73, 58.51% id in 364 aa
YP_048430.1	Similar to Escherichia coli protease degq precursor degq or hhoa or b3234 SWALL:DEGQ_ECOLI (SWALL:P39099) (455 aa) fasta scores: E(): 9.7e-110, 70.67% id in 457 aa
YP_048431.1	Similar to Yersinia pestis  membrane protein ypo3565 SWALL:AAM83730 (EMBL:AJ414157) (134 aa) fasta scores: E(): 1.5e-41, 87.97% id in 133 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YhcB SWALL:YHCB_ECOLI (SWALL:P39436) (134 aa) fasta scores: E(): 5.6e-34, 80.31% id in 127 aa
YP_048432.1	Similar to Yersinia pestis hypothetical protein Ypo3564 SWALL:Q8ZB60 (EMBL:AJ414157) (375 aa) fasta scores: E(): 8.3e-107, 71.88% id in 377 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yhcm SWALL:YHCM_ECOLI (SWALL:P46442) (375 aa) fasta scores: E(): 1.6e-98, 65.6% id in 378 aa, and to Salmonella typhi  ATP/GTP-binding protein sty3526 SWALL:Q8Z3E8 (EMBL:AL627278) (374 aa) fasta scores: E(): 3e-97, 63.9% id in 374 aa
YP_048433.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_048434.1	forms a direct contact with the tRNA during translation
YP_048435.1	transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation
YP_048436.1	Similar to Escherichia coli, and Escherichia coli O157:H7 stringent starvation protein B SspB or b3228 or z4586 or ecs4101 SWALL:SSPB_ECOLI (SWALL:P25663) (165 aa) fasta scores: E(): 3e-39, 71.42% id in 168 aa
YP_048437.1	Similar to Klebsiella terrigena acetoin reductase BudC SWALL:BUDC_KLETE (SWALL:Q04520) (241 aa) fasta scores: E(): 1.3e-51, 69.06% id in 236 aa, and to Klebsiella pneumoniae acetoin reductase BudC SWALL:BUDC_KLEPN (SWALL:Q48436) (256 aa) fasta scores: E(): 1.8e-73, 82.28% id in 254 aa
YP_048438.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_048439.2	catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate
YP_048440.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YhcC SWALL:YHCC_ECOLI (SWALL:P45476) (309 aa) fasta scores: E(): 2.4e-105, 82.23% id in 304 aa
YP_048441.1	sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA
YP_048442.1	No significant database matches.
YP_048443.1	Similar to Escherichia coli, and Shigella flexneri enhancing lycopene biosynthesis protein 2 ElbB or Elb2 or b3209 or sf3249 SWALL:ELBB_ECOLI (SWALL:P26428) (217 aa) fasta scores: E(): 1.6e-57, 68.2% id in 217 aa
YP_048444.1	glycosyltransferase; polymerizes glycan strands in the peptidoglycan
YP_048445.1	Similar to Yersinia pestis  exported protein ypo3473 SWALL:Q8ZBE3 (EMBL:AJ414157) (408 aa) fasta scores: E(): 3.4e-43, 35.81% id in 363 aa, and to Yersinia pestis hypothetical protein ypo3468 SWALL:AAM84304 (EMBL:AJ414157) (388 aa) fasta scores: E(): 7.9e-44, 37.78% id in 397 aa
YP_048446.1	Similar to Yersinia pestis  exported protein ypo3551 SWALL:Q8ZB73 (EMBL:AJ414157) (191 aa) fasta scores: E(): 2.2e-47, 73.82% id in 191 aa, and to Escherichia coli lipoprotein EcfH SWALL:AAL01382 (EMBL:AF407015) (191 aa) fasta scores: E(): 5.6e-46, 71.72% id in 191 aa
YP_048447.1	Required for the timely initiation of chromosomal replication via direct interactions with the dnaA initiator protein
YP_048448.1	Similar to Yersinia pestis hypothetical protein ypo3549 or y0119 SWALL:YZ49_YERPE (SWALL:Q8ZB75) (117 aa) fasta scores: E(): 9.5e-22, 76.31% id in 76 aa, and to Salmonella typhimurium hypothetical protein yran or stm3265 SWALL:YRAN_SALTY (SWALL:Q8ZLU3) (131 aa) fasta scores: E(): 1.6e-17, 61.84% id in 76 aa
YP_048449.1	Similar to Shigella flexneri  glycosylase Yram or sf3188 SWALL:AAN44655 (EMBL:AE015330) (688 aa) fasta scores: E(): 5.9e-116, 52.47% id in 686 aa, and to Yersinia pestis  glycosylase y0118 SWALL:AAM83712 (EMBL:AE013612) (689 aa) fasta scores: E(): 4.8e-55, 59.61% id in 676 aa
YP_048450.1	Similar to Yersinia pestis  tetrapyrrole methylase ypo3547 SWALL:AAM83711 (EMBL:AJ414157) (299 aa) fasta scores: E(): 2.8e-92, 84.12% id in 296 aa, and to Escherichia coli O6 hypothetical protein Yral SWALL:AAN82340 (EMBL:AE016767) (287 aa) fasta scores: E(): 2.4e-90, 83.27% id in 287 aa
YP_048451.1	Similar to Erwinia pyrifoliae  plasmid stability protein StbD stbD SWALL:AAN04532 (EMBL:AY123045) (84 aa) fasta scores: E(): 8.7e-27, 88.09% id in 84 aa, and to Morganella morganii stability protein StbD SWALL:Q9ZH43 (EMBL:AF072126) (83 aa) fasta scores: E(): 9.5e-18, 63.95% id in 86 aaand to Escherichia coli IncF plasmid RepFIB replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 7.6e-10, 43.59% id in 78 aa
YP_048452.1	Similar to Erwinia pyrifoliae  plasmid stability protein StbE SWALL:AAN04531 (EMBL:AY123045) (95 aa) fasta scores: E(): 1.7e-31, 90.32% id in 93 aa, and to Morganella morganii stability protein StbE SWALL:Q9ZH42 (EMBL:AF072126) (93 aa) fasta scores: E(): 1.3e-19, 62.06% id in 87 aa, and to Escherichia coli, and Shigella flexneri hypothetical RelE protein SWALL:RELE_ECOLI (SWALL:P07008) (95 aa) fasta scores: E(): 2.5e-15, 53.76% id in 93 aa
YP_048453.1	seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine
YP_048454.1	Similar to Yersinia pestis hypothetical protein ypo0660 SWALL:Q8ZI54 (EMBL:AJ414144) (386 aa) fasta scores: E(): 1e-145, 87.27% id in 385 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YgiC SWALL:YGIC_ECOLI (SWALL:P24196) (386 aa) fasta scores: E(): 1.4e-133, 78.49% id in 386 aa.
YP_048455.1	Similar to Yersinia pestis  exported protein ypo0661 or y3517 SWALL:Q8ZI53 (EMBL:AJ414144) (228 aa) fasta scores: E(): 2.1e-59, 77.68% id in 233 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein ygib or stm3187 or sty3365 SWALL:Q8XGZ1 (EMBL:AE008846) (223 aa) fasta scores: E(): 3.8e-57, 74.56% id in 228 aa
YP_048456.2	trimeric outer membrane protein involved in efflux of hydrophobic/amphipathic molecules; functions with a number of efflux systems in the inner membrane to transport molecules out of the cell
YP_048457.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_048458.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqiB SWALL:AAN44551 (EMBL:D16557) (140 aa) fasta scores: E(): 1.6e-47, 80% id in 140 aa.
YP_048459.1	Similar to Escherichia coli, and Escherichia coli O157:H7 Icc protein Icc or b3032 or z4389 or ecs3920 SWALL:ICC_ECOLI (SWALL:P36650) (275 aa) fasta scores: E(): 2.1e-82, 70.54% id in 275 aa, and to Yersinia pestis Icc protein homologue Icc or ypo0666 SWALL:Q8ZI48 (EMBL:AJ414144) (275 aa) fasta scores: E(): 4.8e-92, 76.72% id in 275 aa
YP_048460.1	Displays esterase activity toward palmitoyl-CoA and pNP-butyrate
YP_048461.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_048462.1	Similar to Neisseria meningitidis CrgA SWALL:Q9JPU9 (EMBL:AF190471) (299 aa) fasta scores: E(): 4.9e-49, 45.27% id in 296 aa, and to Yersinia pestis LysR-family regulatory protein ypo0669 or y3510 SWALL:Q8ZI45 (EMBL:AJ414144) (303 aa) fasta scores: E(): 1.4e-70, 65.18% id in 293 aa
YP_048463.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 modulator of drug activity B MdaB or mda66 or b3028 or c3768 or z4379 or ecs3910 SWALL:MDAB_ECOLI (SWALL:P40717) (193 aa) fasta scores: E(): 8.6e-61, 70.83% id in 192 aa, and to Yersinia pestis modulator of drug activity MdaB or ypo0670 or y3509 SWALL:Q8ZI44 (EMBL:AJ414144) (194 aa) fasta scores: E(): 2.1e-61, 74.46% id in 188 aa
YP_048464.1	Similar to Lactobacillus casei D-fructose-1,6-biphosphate aldolase sorG SWALL:Q9RGG1 (EMBL:AF129168) (276 aa) fasta scores: E(): 1.9e-37, 41.97% id in 274 aa, and to Escherichia coli O6  aldolase c4483 SWALL:AAN82919 (EMBL:AE016769) (286 aa) fasta scores: E(): 8.4e-89, 80.06% id in 286 aa
YP_048465.1	Similar to Escherichia coli tagatose-1,6-bisphosphate aldolase GatY or b2096 SWALL:GATY_ECOLI (SWALL:P37192) (284 aa) fasta scores: E(): 1.8e-26, 36.36% id in 286 aa, and to Escherichia coli O6  aldolase c4484 SWALL:AAN82920 (EMBL:AE016769) (283 aa) fasta scores: E(): 7.5e-58, 59.01% id in 283 aa
YP_048466.1	Similar to Escherichia coli O6  PTS enzyme-II fructose c4485 SWALL:AAN82921 (EMBL:AE016769) (363 aa) fasta scores: E(): 4.2e-116, 84.29% id in 363 aa, and to Listeria innocua hypothetical protein Lin2240 SWALL:Q929N4 (EMBL:AL596171) (363 aa) fasta scores: E(): 5.9e-68, 51.82% id in 357 aa
YP_048467.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, fructose-like-2 IIb component 1 frwb or b3950 or c4908 or z5506 or ecs4879 or sf4027 SWALL:PTWB_ECOLI (SWALL:P32673) (106 aa) fasta scores: E(): 8.5e-14, 50% id in 100 aa, and to Escherichia coli O6 pts system, fructose-like-2 IIb component 1 c4486 SWALL:AAN82922 (EMBL:AE016769) (104 aa) fasta scores: E(): 2.1e-27, 80.19% id in 101 aa
YP_048468.1	Similar to Escherichia coli O6  phosphotransferase system c4487 SWALL:AAN82923 (EMBL:AE016769) (156 aa) fasta scores: E(): 1.7e-44, 79.73% id in 153 aa, and to Listeria monocytogenes hypothetical protein Lmo2137 lmo2137 SWALL:Q8Y5C8 (EMBL:AL591982) (157 aa) fasta scores: E(): 2.2e-23, 48.99% id in 149 aa
YP_048469.1	Similar to Escherichia coli O6  transcriptional antiterminator c4488 SWALL:AAN82924 (EMBL:AE016769) (532 aa) fasta scores: E(): 1.5e-115, 59.37% id in 512 aa, and to Bacillus stearothermophilus MtlR protein SWALL:Q45419 (EMBL:U18943) (697 aa) fasta scores: E(): 3.1e-30, 25% id in 508 aa
YP_048470.1	No significant database matches.
YP_048471.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_048472.1	Similar to Escherichia coli 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC or ParF or b3018 SWALL:PLSC_ECOLI (SWALL:P26647) (245 aa) fasta scores: E(): 2e-77, 75.41% id in 244 aa
YP_048473.1	Similar to Escherichia coli protein sufi precursor SufI or b3017 SWALL:SUFI_ECOLI (SWALL:P26648) (470 aa) fasta scores: E(): 2.8e-137, 70.87% id in 467 aa, and to Yersinia pestis  cell division protein SufI or ypo0673 or y3504 SWALL:Q8ZI41 (EMBL:AJ414144) (474 aa) fasta scores: E(): 1.9e-150, 77.91% id in 471 aa
YP_048474.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator YegW SWALL:YEGW_ECOLI (SWALL:P76420) (248 aa) fasta scores: E(): 3.2e-22, 30.8% id in 237 aa
YP_048475.1	methylglyoxal reductase/#-keto ester reductase; catalyzes the reduction of 2,5-diketo-D-gluconic acid to 2-keto-L-gulonic acid; also catalyzes the reduction of methylglyoxal, ethyl-2-methylacetoacetate and ethyl-acetoacetate
YP_048476.1	Similar to Yersinia pestis  iron-containing alcohol dehydrogenase ypo0678 SWALL:Q8ZI38 (EMBL:AJ414144) (385 aa) fasta scores: E(): 3.8e-112, 76.94% id in 386 aa, and to Escherichia coli hypothetical oxidoreductase YqhD SWALL:YQHD_ECOLI (SWALL:Q46856) (387 aa) fasta scores: E(): 3e-108, 73.64% id in 387 aa
YP_048477.1	Similar to Bacillus subtilis nitro/flavin reductase NfrA or NfrA1 or Ipa-43D SWALL:NFRA_BACSU (SWALL:P39605) (249 aa) fasta scores: E(): 5.2e-19, 29.83% id in 248 aa, and to Clostridium acetobutylicum ortholog ycnd b.subtilis, nitroreductase cac0718 SWALL:Q97L47 (EMBL:AE007587) (246 aa) fasta scores: E(): 1.2e-42, 45.49% id in 244 aa
YP_048478.1	Similar to Yersinia pestis AraC-family regulatory protein ypo0679 SWALL:AAM87046 (EMBL:AJ414144) (297 aa) fasta scores: E(): 3.2e-77, 66.21% id in 296 aa, and to Escherichia coli hypothetical transcriptional regulator YqhC SWALL:YQHC_ECOLI (SWALL:Q46855) (318 aa) fasta scores: E(): 1.2e-66, 57.77% id in 296 aa
YP_048479.1	Similar to Yersinia pestis  DedA-family membrane protein ypo0680 SWALL:Q8ZI36 (EMBL:AJ414144) (220 aa) fasta scores: E(): 1.6e-66, 75.11% id in 217 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YghB SWALL:YGHB_ECOLI (SWALL:P33196) (219 aa) fasta scores: E(): 1e-60, 69.3% id in 215 aa
YP_048480.1	catalyzes the formation of L-homocysteine from cystathionine
YP_048481.1	Similar to Yersinia pestis  c4-dicarboxylate transporter, large subunit ypo1577 SWALL:AAM86142 (EMBL:AJ414149) (430 aa) fasta scores: E(): 2.6e-146, 92.09% id in 430 aa
YP_048482.1	Similar to Yersinia pestis  C4-dicarboxylate transporter, small subunit ypo1578 SWALL:Q8ZFV0 (EMBL:AJ414149) (168 aa) fasta scores: E(): 5.2e-51, 70.83% id in 168 aa
YP_048483.1	Similar to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): 2.3e-25, 31.3% id in 329 aa, and to Yersinia pestis  C4-dicarboxylate transporter, periplasmic protein ypo1579 SWALL:Q8ZFU9 (EMBL:AJ414149) (330 aa) fasta scores: E(): 5.7e-94, 75.45% id in 330 aa
YP_048484.1	Similar to Escherichia coli, and Escherichia coli O157:H7 biopolymer transport ExbB protein ExbB or b3006 or z4359 or ecs3890 SWALL:EXBB_ECOLI (SWALL:P18783) (244 aa) fasta scores: E(): 9.3e-57, 75.2% id in 242 aa
YP_048485.1	membrane spanning protein in TonB-ExbB-ExbD complex; involved in the tonB-independent energy-dependent transport iron-siderophore complexes and vitamin B12 into the cell
YP_048486.1	Similar to Erwinia amylovora repressor scrR SWALL:Q9F497 (EMBL:AJ250722) (342 aa) fasta scores: E(): 4.7e-86, 65.46% id in 333 aa, and to Klebsiella pneumoniae sucrose operon repressor scrR SWALL:SCRR_KLEPN (SWALL:P37076) (334 aa) fasta scores: E(): 5.5e-88, 65.07% id in 335 aa
YP_048487.1	Similar to Erwinia amylovora sucrose hydrolase, invertase ScrB SWALL:Q9F498 (EMBL:AJ250722) (469 aa) fasta scores: E(): 5.2e-132, 62.47% id in 469 aa, and to Klebsiella pneumoniae sucrose-6-phosphate hydrolase ScrB SWALL:SCRB_KLEPN (SWALL:P27217) (465 aa) fasta scores: E(): 1.3e-110, 55.19% id in 462 aa
YP_048488.1	Similar to Klebsiella pneumoniae PTS system, sucrose-specific IIbc component ScrA SWALL:PTSB_KLEPN (SWALL:P27219) (456 aa) fasta scores: E(): 2.1e-142, 80.92% id in 456 aa, and to Erwinia amylovora enzyme II ScrA SWALL:Q9F499 (EMBL:AJ250722) (457 aa) fasta scores: E(): 9e-140, 80.97% id in 452 aa
YP_048489.1	Similar to Klebsiella pneumoniae sucrose porin precursor ScrY SWALL:SCRY_KLEPN (SWALL:P27218) (505 aa) fasta scores: E(): 1.3e-125, 63.33% id in 510 aa, and to Erwinia amylovora porin ScrY SWALL:Q9F4A0 (EMBL:AJ250722) (514 aa) fasta scores: E(): 8.5e-118, 62.57% id in 521 aa
YP_048490.1	phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least
YP_048491.1	Similar to Yersinia pestis  membrane protein ypo4112 SWALL:AAM87668 (EMBL:AJ414160) (223 aa) fasta scores: E(): 2e-10, 30% id in 190 aa, and to Proteus mirabilis CcM1 protein SWALL:O86433 (EMBL:AJ000084) (228 aa) fasta scores: E(): 1.1e-08, 32.06% id in 131 aa
YP_048492.1	Similar to Escherichia coli O6 hypothetical protein c3274 SWALL:AAN81723 (EMBL:AE016765) (103 aa) fasta scores: E(): 2.1e-22, 55.34% id in 103 aa
YP_048493.1	Similar to Escherichia coli O6 hypothetical protein YgjM c3273 SWALL:AAN81722 (EMBL:AE016765) (139 aa) fasta scores: E(): 1.1e-21, 50% id in 134 aa
YP_048494.1	No significant database matches.
YP_048495.1	Similar to Rhizobium meliloti  amino acid decarboxylase, pyridoxal-dependent protein rb1241 SWALL:Q92U95 (EMBL:AL603646) (473 aa) fasta scores: E(): 3.5e-54, 42.5% id in 440 aa, and to Polyangium cellulosum aromatic amino acid decarboxylase Ddc SWALL:Q9L402 (EMBL:AJ270937) (512 aa) fasta scores: E(): 1.4e-17, 22.95% id in 453 aa
YP_048496.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa1352 pa1352 SWALL:Q9I3Z2 (EMBL:AE004564) (403 aa) fasta scores: E(): 8.6e-83, 60.45% id in 397 aa, and to Escherichia coli hypothetical protein YgaY SWALL:YGAY_ECOLI (SWALL:P76628) (394 aa) fasta scores: E(): 1.5e-55, 41.17% id in 391 aa. Note that redicted start site of this feature is around 23 AA upstream of that predicted for its ortholgues.
YP_048497.1	Similar to Pseudomonas putida conserved hypothetical protein pp0502 SWALL:AAN66130 (EMBL:AE016775) (147 aa) fasta scores: E(): 8e-26, 55.14% id in 136 aa. Note that there are no significant database matches to enterobacterial species.
YP_048498.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein YhbP SWALL:AAN44662 (EMBL:U18997) (147 aa) fasta scores: E(): 2.2e-29, 54.54% id in 143 aa
YP_048499.1	Similar to Salmonella typhi hypothetical protein sty3451 SWALL:Q8Z3I6 (EMBL:AL627278) (211 aa) fasta scores: E(): 2.2e-41, 55.76% id in 208 aa, and to Escherichia coli O157:H7 hypothetical protein YraR SWALL:Q8XAA0 (EMBL:AE005544) (226 aa) fasta scores: E(): 2.7e-41, 54.8% id in 208 aa
YP_048500.1	activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions
YP_048501.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_048502.1	Similar to Pseudomonas aeruginosa hypothetical protein pa1733 SWALL:Q9I304 (EMBL:AE004599) (243 aa) fasta scores: E(): 5.7e-55, 59.25% id in 243 aa. Note that there are no significant database matches to enterobacterial species.
YP_048503.1	Similar to Pseudomonas aeruginosa hypothetical protein pa1732 SWALL:Q9I305 (EMBL:AE004599) (266 aa) fasta scores: E(): 9.2e-52, 51.1% id in 272 aa. Note that there are no significant database matches to enterobacterial species.
YP_048504.1	Similar to Pseudomonas aeruginosa hypothetical protein pa1731 SWALL:Q9I306 (EMBL:AE004599) (317 aa) fasta scores: E(): 1.3e-51, 45.57% id in 316 aa. Note that there are no significant database matches to enterobacterial species.
YP_048505.1	Similar to Pseudomonas aeruginosa hypothetical protein pa1730 SWALL:Q9I307 (EMBL:AE004599) (470 aa) fasta scores: E(): 9.3e-133, 68.88% id in 466 aa. Note that there are no significant database matches to enterobacterial species.
YP_048506.1	Similar to Salmonella typhimurium, and Salmonella typhi YjgF SWALL:Q9X445 (EMBL:AF095578) (128 aa) fasta scores: E(): 1.5e-36, 82.81% id in 128 aa, and to Yersinia pestis hypothetical protein Ypo3590 SWALL:Q8ZB37 (EMBL:AJ414157) (128 aa) fasta scores: E(): 5.4e-37, 83.59% id in 128 aa
YP_048507.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_048508.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_048509.1	Similar to Yersinia pestis hypothetical protein ypo3447 SWALL:AAM84326 (EMBL:AJ414157) (152 aa) fasta scores: E(): 6.9e-49, 83.89% id in 149 aa, and to Escherichia coli, and Shigella flexneri protein Yjgk SWALL:YJGK_ECOLI (SWALL:P39335) (150 aa) fasta scores: E(): 1.1e-39, 70.47% id in 149 aa
YP_048510.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; E. coli K12 has two genes, argF and argI, capable of producing functional ornithine carbamoyltransferase. When both are active in the same cell, the two gene products form a family of four hybrid trimeric isoenzymes designated, FFF, FFI, FII, and III.
YP_048511.1	Similar to Yersinia pestis hypothetical protein ypo3445 SWALL:AAM84328 (EMBL:AJ414157) (143 aa) fasta scores: E(): 1e-40, 80.42% id in 143 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjgD SWALL:YJGD_ECOLI (SWALL:P37163) (138 aa) fasta scores: E(): 2.9e-37, 75.88% id in 141 aa
YP_048512.1	Similar to Yersinia pestis  acetyltransferase ypo3444 SWALL:Q8ZBH0 (EMBL:AJ414157) (167 aa) fasta scores: E(): 2.7e-48, 74.84% id in 167 aa, and to Escherichia coli hypothetical acetyltransferase YjgM SWALL:YJGM_ECOLI (SWALL:P39337) (167 aa) fasta scores: E(): 3.4e-41, 67.94% id in 156 aa.
YP_048513.1	Similar to Yersinia pestis  membrane protein ypo0399 SWALL:Q8ZIT9 (EMBL:AJ414142) (398 aa) fasta scores: E(): 2.2e-94, 59.04% id in 398 aa
YP_048514.1	Similar to Yersinia pestis m48 peptidase family protein ypo0398 SWALL:AAM87329 (EMBL:AJ414142) (348 aa) fasta scores: E(): 4.5e-79, 59.88% id in 344 aa.
YP_048515.1	Similar to Bradyrhizobium japonicum protein blr6677 SWALL:BAC51942 (EMBL:AP005959) (353 aa) fasta scores: E(): 9.7e-77, 55.45% id in 339 aa, and to Caulobacter crescentus hydrolase, alpha/beta hydrolase fold family cc3204 SWALL:Q9A3K0 (EMBL:AE005984) (358 aa) fasta scores: E(): 1.5e-48, 44.41% id in 331 aa. Note that there are no significant database matches to enterobacterial species.
YP_048516.1	Similar to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsc1460 SWALL:Q8XZE1 (EMBL:AL646064) (513 aa) fasta scores: E(): 3.5e-62, 42.3% id in 520 aa, and to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 5.4e-57, 39.42% id in 553 aa.
YP_048517.1	Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 9.6e-40, 29.33% id in 559 aa, and to Yersinia pestis hemolysin activator protein ypo2491 or y1696 SWALL:Q8ZDR5 (EMBL:AJ414152) (562 aa) fasta scores: E(): 8.5e-141, 63.86% id in 559 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.8e-26, 26.52% id in 524 aa
YP_048518.1	Similar to uncultured bacterium orf118 SWALL:AAN16074 (EMBL:AY129391) (117 aa) fasta scores: E(): 1.8e-07, 32.2% id in 118 aa. No other significant database matches.
YP_048519.1	Similar to Escherichia coli RNA 2'-phosphotransferase KptA or b4331 SWALL:KPTA_ECOLI (SWALL:P39380) (184 aa) fasta scores: E(): 2.6e-38, 54.8% id in 177 aa
YP_048520.1	Similar to Yersinia pestis hypothetical protein Ypo2486 SWALL:Q8ZDS0 (EMBL:AJ414152) (677 aa) fasta scores: E(): 5.9e-27, 40.91% id in 479 aa, and to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.9e-22, 43.51% id in 347 aa
YP_048521.1	No significant database matches.
YP_048522.1	No significant database matches.
YP_048523.1	Similar to Shigella flexneri orf, partial conserved hypothetical protein sf0591 SWALL:AAN42233 (EMBL:AE015090) (95 aa) fasta scores: E(): 6.2e-05, 44.44% id in 54 aa. No other significant database matches.
YP_048524.1	Similar to Yersinia pestis  hemagglutinin-like secreted protein y1701 SWALL:AAM85269 (EMBL:AE013774) (681 aa) fasta scores: E(): 1.7e-06, 68.29% id in 41 aa, and to Escherichia coli O6 hypothetical protein c1207 SWALL:AAN79669 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.3e-06, 64.28% id in 42 aa
YP_048525.1	Similar to Human herpesvirus 4 capsid protein vp26 bfrf3 SWALL:CAD53401 (EMBL:AJ507799) (176 aa) fasta scores: E(): 5.7, 33.73% id in 83 aa, and to Epstein-barr virus capsid protein vp26 bfrf3 SWALL:VP26_EBV (SWALL:P14348) (176 aa) fasta scores: E(): 5.7, 33.73% id in 83 aa; No significant database matches.
YP_048526.1	Similar to Streptococcus mutans conserved hypothetical protein smu.1642C SWALL:AAN59281 (EMBL:AE014994) (210 aa) fasta scores: E(): 3.5e-19, 35.92% id in 206 aa. Note that there are no significant database matches to enterobacterial species.
YP_048527.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_048528.1	binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_048529.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_048530.1	Similar to Salmonella typhimurium  permease YjgP SWALL:Q8ZK27 (EMBL:AE008910) (366 aa) fasta scores: E(): 1.1e-107, 73.33% id in 360 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjgP SWALL:YJGP_ECOLI (SWALL:P39340) (366 aa) fasta scores: E(): 1.3e-106, 73.46% id in 358 aa. YjgP belongs to a family of predicted permeases but there is no experimental evidence of this.
YP_048531.1	Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein YjgQ SWALL:YJGQ_ECOLI (SWALL:P39341) (360 aa) fasta scores: E(): 2.6e-108, 77.24% id in 356 aa, and to Salmonella typhimurium permease YjgQ SWALL:Q8ZK26 (EMBL:AE008910) (360 aa) fasta scores: E(): 2.6e-109, 78.37% id in 356 aa.YjgQ belongs to a family of predicted permeases but there is no experimental evidence of this.
YP_048532.1	Similar to Shigella flexneri integrase intB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 5.6e-17, 81.48% id in 54 aa, and to Escherichia coli integrase inT SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): 1.7e-15, 70.9% id in 55 aa.
YP_048533.1	Similar to Pseudomonas resinovorans hypothetical protein SWALL:BAC41561 (EMBL:AB088420) (133 aa) fasta scores: E(): 5.7e-08, 41.97% id in 81 aa, and to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7010 SWALL:O82927 (EMBL:AB011549) (94 aa) fasta scores: E(): 1.7e-06, 38.66% id in 75 aa
YP_048534.1	Similar to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7011 SWALL:O82928 (EMBL:AB011549) (91 aa) fasta scores: E(): 9.3e-12, 42.85% id in 91 aa, and to Shigella sonnei YacB protein yacB SWALL:Q9Z4G4 (EMBL:AB021078) (93 aa) fasta scores: E(): 0.63, 30% id in 90 aa
YP_048535.1	Similar to Corynebacterium glutamicum shikimate kinase Arok or cgl1622 SWALL:AROK_CORGL (SWALL:Q9X5D1) (169 aa) fasta scores: E(): 0.12, 26.62% id in 169 aa, and to Xanthomonas campestris hypothetical protein Xcc0737 SWALL:Q8PCI9 (EMBL:AE012173) (148 aa) fasta scores: E(): 2e-19, 52.38% id in 126 aa
YP_048536.1	Weakly similar to Bacillus subtilis DNA-binding protein YobI SWALL:O34784 (EMBL:AF027868) (1201 aa) fasta scores: E(): 2.7, 21.21% id in 773 aa. Note that there are no significant database matches to enterobacterial species.
YP_048537.1	Similar to Bacteriophage 186 late control protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 1.1e-08, 52.38% id in 63 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 3.2e-12, 57.57% id in 66 aa. Also similar to ECA0833 (41.818% id. in 55 aa overlap), and to ECA3454 (84.146% id. in 50 aa overlap), and to ECA2599 (39.726% id. in 51 aa overlap).
YP_048538.1	Similar to Escherichia coli O6 hypothetical protein ycfd ycfd or c1480 SWALL:AAN79949 (EMBL:AE016759) (376 aa) fasta scores: E(): 1.3e-105, 66.12% id in 372 aa
YP_048539.1	Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36135 (EMBL:AY057845) (394 aa) fasta scores: E(): 2.9e-49, 41.3% id in 368 aa. Note that there are no significant database matches to enterobacterial species.
YP_048540.1	Similar to Vibrio vulnificus ABC-type multidrug transport system, permease component vv12691 SWALL:AAO11038 (EMBL:AE016806) (381 aa) fasta scores: E(): 1.2e-62, 45.26% id in 391 aa
YP_048541.1	Similar to Vibrio cholerae hypothetical protein Vc1608 vc1608 SWALL:Q9KRM8 (EMBL:AE004238) (387 aa) fasta scores: E(): 3.2e-46, 38.08% id in 365 aa
YP_048542.1	Similar to Vibrio cholerae hypothetical protein vc1607 SWALL:Q9KRM9 (EMBL:AE004238) (324 aa) fasta scores: E(): 1.5e-72, 62.03% id in 324 aa.
YP_048543.1	Similar to Vibrio cholerae hypothetical protein Vc1606 SWALL:Q9KRN0 (EMBL:AE004238) (476 aa) fasta scores: E(): 6e-69, 44.34% id in 451 aa, and to Shewanella oneidensis outer membrane efflux protein so4090 SWALL:AAN57064 (EMBL:AE015839) (473 aa) fasta scores: E(): 1.2e-68, 45.11% id in 450 aa
YP_048544.1	catalyzes the formation of fumarate from aspartate
YP_048545.1	Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmei0116 SWALL:Q8YJG7 (EMBL:AE009454) (308 aa) fasta scores: E(): 1.7e-24, 29.18% id in 305 aa
YP_048546.1	Similar to Porphyromonas gingivalis immunogenic 23 kDa lipoprotein pg3 SWALL:Q9XCA4 (EMBL:AF145799) (223 aa) fasta scores: E(): 2.3e-10, 32.2% id in 236 aa, and to Escherichia coli hypothetical lipoprotein YiaD precursor SWALL:YIAD_ECOLI (SWALL:P37665) (219 aa) fasta scores: E(): 1.5e-09, 35.13% id in 222 aa.
YP_048547.1	No significant database matches.
YP_048548.1	No significant database matches.
YP_048549.1	No significant database matches.
YP_048550.1	Similar to Neisseria polysaccharea hypothetical protein SWALL:AAO17344 (EMBL:AF542178) (249 aa) fasta scores: E(): 4e-35, 38.97% id in 254 aa
YP_048551.1	Similar to Pseudomonas aeruginosa hypothetical protein pa2695 SWALL:Q9I0E7 (EMBL:AE004697) (367 aa) fasta scores: E(): 4.9e-93, 67.61% id in 352 aa, and to Escherichia coli hypothetical protein YaiW SWALL:YAIW_ECOLI (SWALL:P77562) (364 aa) fasta scores: E(): 4.5e-89, 66.02% id in 365 aa.
YP_048552.1	Similar to Rahnella aquatilis  methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 2.3e-40, 34.6% id in 500 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 8.8e-39, 36.2% id in 464 aa
YP_048553.1	Similar to Salmonella typhimurium Mg(2+) transport ATPase MgtB or stm3763 SWALL:ATMB_SALTY (SWALL:P22036) (908 aa) fasta scores: E(): 0, 70.62% id in 909 aa
YP_048554.1	Similar to Rahnella aquatilis  methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 6.9e-55, 40.22% id in 527 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or Chem SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 4.7e-51, 40.61% id in 517 aa
YP_048555.1	Similar to Yersinia pestis hypothetical protein ypo0326 SWALL:Q8ZJ05 (EMBL:AJ414142) (104 aa) fasta scores: E(): 1.3e-33, 75% id in 104 aa, and to Escherichia coli hypothetical protein yiil SWALL:YIIL_ECOLI (SWALL:P32156) (104 aa) fasta scores: E(): 3.4e-33, 73.78% id in 103 aa
YP_048556.1	Similar to Escherichia coli rhamnulose-1-phosphate aldolase RhaD or b3902 SWALL:RHAD_ECOLI (SWALL:P32169) (274 aa) fasta scores: E(): 7.4e-86, 74.63% id in 272 aa
YP_048557.1	catalyzes the formation of L-rhamnulose from L-rhamnose
YP_048558.1	catalyzes the ATP-dependent phosphorylation of rhamnulose
YP_048559.1	activates the expression of the rhaBAD operon and rhaT gene
YP_048560.1	Similar to Escherichia coli L-rhamnose operon transcriptional activator RhaR or RhaC1 or b3906 SWALL:RHAR_ECOLI (SWALL:P09378) (312 aa) fasta scores: E(): 1.4e-50, 46.95% id in 279 aa
YP_048561.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein YoeB SWALL:YOEB_ECOLI (SWALL:P56605) (84 aa) fasta scores: E(): 8.2e-31, 85.71% id in 84 aa.
YP_048562.1	Antitoxin that counteracts the effect of the YoeB toxin
YP_048563.1	Similar to Bradyrhizobium japonicum ABC transporter ATP-binding protein blr1604 SWALL:BAC46869 (EMBL:AP005940) (626 aa) fasta scores: E(): 4.6e-90, 49.21% id in 573 aa, and to Agrobacterium tumefaciens MoaD SWALL:O50270 (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-61, 39.78% id in 553 aa
YP_048564.1	Similar to Xanthomonas axonopodis ABC transporter permease OppC SWALL:Q8PP30 (EMBL:AE011717) (294 aa) fasta scores: E(): 8.7e-38, 43.26% id in 282 aa
YP_048565.1	Similar to Xanthomonas axonopodis ABC transporter permease oppC SWALL:Q8PP31 (EMBL:AE011717) (325 aa) fasta scores: E(): 2e-42, 43.27% id in 305 aa, and to Salmonella typhi hypothetical ABC transporter permease protein yliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 1.1e-34, 36.36% id in 308 aa
YP_048566.1	Similar to Xanthomonas axonopodis ABC transporter oligopeptide binding protein oppa or xac0856 SWALL:Q8PP32 (EMBL:AE011717) (538 aa) fasta scores: E(): 9.5e-59, 33.84% id in 526 aa, and to Escherichia coli O157:H7 periplasmic binding protein for nickel nika or z4868 or ecs4343 SWALL:Q8X5U3 (EMBL:AE005572) (524 aa) fasta scores: E(): 9.3e-27, 26.4% id in 534 aa
YP_048567.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YagU SWALL:YAGU_ECOLI (SWALL:P77262) (204 aa) fasta scores: E(): 1.6e-77, 88.23% id in 204 aa
YP_048568.1	transports L-rhamnose and L-lyxose into the cell
YP_048569.1	Similar to Salmonella typhi hypothetical protein yqha sty3326 or t3074 SWALL:YQHA_SALTI (SWALL:Q8Z3Q8) (164 aa) fasta scores: E(): 5.4e-49, 84.41% id in 154 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4574 pa4574 SWALL:Y9H4_PSEAE (SWALL:Q9HVL0) (162 aa) fasta scores: E(): 7.2e-49, 83.11% id in 154 aa
YP_048570.1	Similar to Pseudomonas aeruginosa hypothetical protein pa2197 SWALL:Q9I1S0 (EMBL:AE004646) (345 aa) fasta scores: E(): 1.9e-102, 75.94% id in 345 aa, and to Salmonella typhi  NADP-dependent oxidoreductase sty1476 SWALL:Q8Z742 (EMBL:AL627270) (345 aa) fasta scores: E(): 1.7e-100, 76.23% id in 345 aa
YP_048571.1	Similar to Yersinia pestis  membrane protein ypo0754 SWALL:Q8ZHX2 (EMBL:AJ414144) (100 aa) fasta scores: E(): 3.1, 30% id in 60 aa, and to Salmonella typhimurium  inner membrane protein yjeo or stm4346 SWALL:Q8ZKB3 (EMBL:AE008904) (104 aa) fasta scores: E(): 0.34, 34% id in 50 aa
YP_048572.1	Similar to Yersinia pestis  membrane protein ypo0754 SWALL:Q8ZHX2 (EMBL:AJ414144) (100 aa) fasta scores: E(): 1.5, 29.89% id in 97 aa, and to Salmonella typhimurium  inner membrane protein yjeo or stm4346 SWALL:Q8ZKB3 (EMBL:AE008904) (104 aa) fasta scores: E(): 0.00095, 30.2% id in 96 aa
YP_048573.1	Similar to Escherichia coli O6 hypothetical protein c3766 SWALL:AAN82210 (EMBL:AE016766) (245 aa) fasta scores: E(): 1.7e-14, 34.93% id in 229 aa.
YP_048574.1	Similar to Yersinia pestis hypothetical protein ypo2868 SWALL:AAM84938 (EMBL:AJ414154) (159 aa) fasta scores: E(): 2.3e-30, 50.94% id in 159 aa, and to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 2.6e-22, 42.76% id in 159 aa
YP_048575.1	Similar to Escherichia coli protein VisC or b2906 SWALL:VISC_ECOLI (SWALL:P25535) (400 aa) fasta scores: E(): 3.8e-114, 72.43% id in 399 aa
YP_048576.1	Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone
YP_048577.1	exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide
YP_048578.1	the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown
YP_048579.1	Similar to Yersinia pestis hypothetical protein ypo0912 SWALL:Q8ZHI1 (EMBL:AJ414145) (109 aa) fasta scores: E(): 2.9e-35, 91.74% id in 109 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YgfE SWALL:YGFE_ECOLI (SWALL:P45580) (109 aa) fasta scores: E(): 3.1e-31, 82.56% id in 109 aa
YP_048580.1	Similar to Oryctolagus cuniculus 5-formyltetrahydrofolate cyclo-ligase MthfS SWALL:FTHC_RABIT (SWALL:P80405) (201 aa) fasta scores: E(): 2.9e-11, 28.35% id in 201 aa, and to Yersinia pestis 5-formyltetrahydrofolate cyclo-ligase-family protein ypo0913 or y3300 SWALL:Q8ZHI0 (EMBL:AJ414145) (198 aa) fasta scores: E(): 1.2e-51, 67.87% id in 193 aa
YP_048581.1	catalyzes the formation of NAD(+) from nicotinamide ribonucleotide
YP_048582.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_048583.1	catalyzes the formation of serine from O-phosphoserine
YP_048584.1	Similar to Escherichia coli, and Shigella flexneri protein Smp precursor Smp or b4387 or sf4419 SWALL:SMP_ECOLI (SWALL:P18838) (214 aa) fasta scores: E(): 3.9e-52, 65.72% id in 213 aa
YP_048585.1	No significant database matches.
YP_048586.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_048587.1	Similar to Escherichia coli, and Escherichia coli O6 osmotically inducible protein Y precursor OsmY or b4376 or c5457 SWALL:OSMY_ECOLI (SWALL:P27291) (201 aa) fasta scores: E(): 6.7e-31, 56.93% id in 202 aa
YP_048588.1	Similar to Escherichia coli O157:H7 hypothetical protein Z5978 SWALL:Q8X479 (EMBL:AE005669) (59 aa) fasta scores: E(): 3.4e-16, 98.11% id in 53 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein stm4562 or sty4912 SWALL:Q8XEW6 (EMBL:AE008914) (59 aa) fasta scores: E(): 4e-16, 96.22% id in 53 aa
YP_048589.1	Similar to Xanthomonas axonopodis hypothetical protein xac4007 SWALL:Q8PFH4 (EMBL:AE012049) (69 aa) fasta scores: E(): 6.4e-07, 47.36% id in 57 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein YjbJ SWALL:AAN45582 (EMBL:U00006) (71 aa) fasta scores: E(): 0.00014, 37.93% id in 58 aa.
YP_048590.1	Similar to Yersinia pestis  metalloenzyme ypo0434 SWALL:Q8ZIQ6 (EMBL:AJ414142) (262 aa) fasta scores: E(): 1.3e-62, 64.2% id in 257 aa, and to Escherichia coli deoxyribonuclease YjjV SWALL:YJJV_ECOLI (SWALL:P39408) (259 aa) fasta scores: E(): 1.8e-61, 62.45% id in 253 aa
YP_048591.1	Similar to Yersinia pestis  Na+ dependent nucleoside transporter-family protein ypo0435 SWALL:Q8ZIQ5 (EMBL:AJ414142) (423 aa) fasta scores: E(): 9.9e-133, 84.39% id in 423 aa
YP_048592.1	Similar to Escherichia coli 4'-phosphopantetheinyl transferase EntD or b0583 SWALL:ENTD_ECOLI (SWALL:P19925) (209 aa) fasta scores: E(): 4.1e-09, 31.49% id in 181 aa, and to Photorhabdus luminescens NgrA SWALL:Q9AI14 (EMBL:AF288077) (248 aa) fasta scores: E(): 2.9e-24, 34.32% id in 236 aa
YP_048593.1	Similar to Escherichia coli colicin I receptor precursor CirA or Cir or FeuA or b2155 SWALL:CIRA_ECOLI (SWALL:P17315) (663 aa) fasta scores: E(): 9.5e-57, 36.61% id in 661 aa, and to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 1.1e-48, 29.73% id in 676 aa
YP_048594.1	Similar to Stigmatella aurantiaca MxcK SWALL:Q9F632 (EMBL:AF299336) (407 aa) fasta scores: E(): 2.9e-29, 32.74% id in 394 aa, and to Azotobacter vinelandii AvxA SWALL:Q8KY99 (EMBL:AF238500) (407 aa) fasta scores: E(): 1.2e-25, 35.04% id in 371 aa
YP_048595.1	synthesizes isochorismate acid from chorismate
YP_048596.1	bifunctional 2,3-dihydroxybenzoate-AMP ligase/S-dihydroxybenzoyltransferase; activates the carboxylate group of 2,3-dihydroxy-benzoate forming (2,3-dihydroxybenzoyl)adenylate then catalyzes the acylation of holo-entB with 2,3-dihydroxy-benzoate adenylate
YP_048597.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa
YP_048598.1	Similar to Escherichia coli enterobactin synthetase component F EntF or b0586 SWALL:ENTF_ECOLI (SWALL:P11454) (1293 aa) fasta scores: E(): 2.4e-63, 30.4% id in 1069 aa, and to Stigmatella aurantiaca MxcG SWALL:Q9F636 (EMBL:AF299336) (1456 aa) fasta scores: E(): 6.8e-106, 41.03% id in 1065 aa
YP_048599.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_048600.1	Similar to Bacillus subtilis fengycin synthetase FenE SWALL:O30981 (EMBL:AF023465) (2554 aa) fasta scores: E(): 1.3e-104, 31.95% id in 1546 aa, and to Pseudomonas putida non-ribosomal peptide synthetase domain protein, pp4220 SWALL:AAN69801 (EMBL:AE016789) (2628 aa) fasta scores: E(): 1.1e-112, 31.67% id in 2033 aa
YP_048601.1	Similar to Tolypothrix sp. PCC 7601/1 peptide synthetase TpsA SWALL:Q93IL7 (EMBL:AJ318786) (930 aa) fasta scores: E(): 4.5e-41, 30.3% id in 561 aa, and to Pseudomonas syringae syringomycin biosynthesis enzyme 1 SyrB1 SWALL:Q52400 (EMBL:U25130) (614 aa) fasta scores: E(): 1e-40, 32.3% id in 517 aa
YP_048602.1	No significant database matches. Possible false CDS.
YP_048603.1	Similar to Pseudomonas putida hypothetical protein pp5236 SWALL:AAN70801 (EMBL:AE016793) (707 aa) fasta scores: E(): 6.7e-20, 25.88% id in 653 aa, and to Yersinia pestis  membrane protein ypo1990 SWALL:Q8ZF06 (EMBL:AJ414150) (703 aa) fasta scores: E(): 3.6e-12, 23.26% id in 533 aa
YP_048604.1	No significant database matches.
YP_048605.1	Similar to Streptomyces wedmorensis phosphoenolpyruvate phosphomutase Fom1 SWALL:P96074 (EMBL:AB016934) (435 aa) fasta scores: E(): 6.1e-59, 54.26% id in 293 aa, and to Streptomyces hygroscopicus phosphoenolpyruvate phosphomutase BcpB SWALL:PEPM_STRHY (SWALL:P29247) (313 aa) fasta scores: E(): 2.7e-22, 35.39% id in 291 aa
YP_048606.1	Similar to Streptomyces wedmorensis phosphonopyruvate decarboxylase Fom2 SWALL:Q56190 (EMBL:AB016934) (384 aa) fasta scores: E(): 3.3e-55, 45.5% id in 389 aa, and to Streptomyces viridochromogenes 3-phosphonopyruvate decarboxylase Ppd SWALL:PPD_STRVR (SWALL:O86938) (397 aa) fasta scores: E(): 1.8e-26, 34.56% id in 405 aa
YP_048607.1	Similar to Escherichia coli 2-hydroxy-3-oxopropionate reductase GlxR or GlxB1 or b0509 SWALL:GLXR_ECOLI (SWALL:P77161) (292 aa) fasta scores: E(): 4.9e-13, 26.16% id in 279 aa, and to Pseudomonas aeruginosa probable 3-hydroxyisobutyrate dehydrogenase pa3312 SWALL:Q9HYT2 (EMBL:AE004753) (296 aa) fasta scores: E(): 3.4e-17, 31.09% id in 283 aa
YP_048608.1	Similar to Escherichia coli PhnG protein PhnG or b4101 SWALL:PHNG_ECOLI (SWALL:P16685) (150 aa) fasta scores: E(): 8.5e-27, 50.68% id in 146 aa
YP_048609.1	Similar to Escherichia coli PhnH protein phnH SWALL:PHNH_ECOLI (SWALL:P16686) (194 aa) fasta scores: E(): 5.7e-26, 41.57% id in 190 aa.
YP_048610.1	Similar to Yersinia pestis PhnI protein SWALL:Q8ZBF7 (EMBL:AJ414157) (392 aa) fasta scores: E(): 3.9e-100, 72.65% id in 362 aa, and to Escherichia coli PhnI SWALL:PHNI_ECOLI (SWALL:P16687) (354 aa) fasta scores: E(): 8.5e-95, 69.46% id in 357 aa
YP_048611.1	Similar to Escherichia coli O6 PhnJ protein SWALL:AAN83528 (EMBL:AE016771) (309 aa) fasta scores: E(): 1.3e-93, 75.8% id in 310 aa, and to Escherichia coli PhnJ protein SWALL:PHNJ_ECOLI (SWALL:P16688) (281 aa) fasta scores: E(): 6.9e-93, 82.84% id in 274 aa
YP_048612.1	Similar to Escherichia coli phosphonates transport ATP-binding protein PhnK SWALL:PHNK_ECOLI (SWALL:P16678) (252 aa) fasta scores: E(): 6.3e-69, 76.77% id in 254 aa.
YP_048613.1	Similar to Escherichia coli phosphonates transport ATP-binding protein phnl phnl or b4096 SWALL:PHNL_ECOLI (SWALL:P16679) (226 aa) fasta scores: E(): 2.6e-55, 65.77% id in 225 aa
YP_048614.1	Similar to Escherichia coli PhnM SWALL:PHNM_ECOLI (SWALL:P16689) (378 aa) fasta scores: E(): 5.3e-94, 62.96% id in 378 aa
YP_048615.1	Similar to Escherichia coli ATP-binding protein PhnN or b4094 SWALL:PHNN_ECOLI (SWALL:P16690) (185 aa) fasta scores: E(): 2.1e-29, 51.97% id in 177 aa
YP_048616.1	required for the use of phosphonates and phosphite as phosphorus sources
YP_048617.1	Similar to Escherichia coli  colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 6.8e-69, 43.62% id in 463 aa, and to Klebsiella pneumoniae probable CPS biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 1e-69, 43.95% id in 455 aa
YP_048618.1	Similar to Methylobacillus sp. 12S EpsL epsL SWALL:BAC55133 (EMBL:AB062506) (401 aa) fasta scores: E(): 4, 20.86% id in 393 aa, and to Vibrio vulnificus conserved hypothetical protein vv12303 SWALL:AAO10679 (EMBL:AE016804) (416 aa) fasta scores: E(): 4e-82, 46.98% id in 415 aa
YP_048619.1	Similar to Vibrio vulnificus polysaccharide export-related protein vv12304 SWALL:AAO10680 (EMBL:AE016804) (174 aa) fasta scores: E(): 5.2e-31, 53.61% id in 166 aa, and to Brucella suis capsule polysaccharide export protein,  br0783 SWALL:AAN29712 (EMBL:AE014383) (195 aa) fasta scores: E(): 5.5e-18, 37.91% id in 182 aa
YP_048620.1	Similar to Rhizobium leguminosarum exopolysaccharide polymerization protein PssP SWALL:O85453 (EMBL:AF067140) (746 aa) fasta scores: E(): 8.1e-10, 23.42% id in 730 aa, and to Vibrio cholerae exopolysaccharide biosynthesis protein,  vc0937 SWALL:Q9KTG5 (EMBL:AE004176) (737 aa) fasta scores: E(): 1.4e-44, 28.87% id in 717 aa
YP_048621.1	Similar to Rhizobium meliloti succinoglycan biosynthesis transport protein ExoT or rb1074 or smb20950 SWALL:EXOT_RHIME (SWALL:P33699) (494 aa) fasta scores: E(): 0.042, 19.1% id in 335 aa, and to Vibrio vulnificus hypothetical protein vv12306 SWALL:AAO10682 (EMBL:AE016804) (411 aa) fasta scores: E(): 1e-94, 57.56% id in 403 aa, and to Staphylococcus aureus Cap8K SWALL:P72377 (EMBL:U73374) (412 aa) fasta scores: E(): 2.9e-09, 19.75% id in 400 aa
YP_048622.1	Similar to Streptococcus agalactiae CpsH or cpsiaH SWALL:Q8VL36 (EMBL:AF332914) (379 aa) fasta scores: E(): 0.76, 18.88% id in 360 aa, and to Vibrio vulnificus hypothetical protein vv12307 SWALL:AAO10683 (EMBL:AE016804) (466 aa) fasta scores: E(): 7.4e-117, 61.31% id in 455 aa
YP_048623.1	Similar to Vibrio vulnificus  glycosyltransferase protein vv12308 SWALL:AAO10684 (EMBL:AE016804) (332 aa) fasta scores: E(): 7.6e-86, 64.81% id in 324 aa, and to Rhizobium meliloti  glycosyltransferase protein rb1330 or smb21500 SWALL:Q92U13 (EMBL:AL603646) (347 aa) fasta scores: E(): 5.2e-37, 37.42% id in 326 aa
YP_048624.1	Similar to Klebsiella pneumoniae WbdC SWALL:Q9RMT8 (EMBL:AF189151) (274 aa) fasta scores: E(): 8.9e-10, 28.04% id in 246 aa, and to Vibrio vulnificus glycosyltransferase protein vv12309 SWALL:AAO10685 (EMBL:AE016804) (401 aa) fasta scores: E(): 5e-95, 60% id in 400 aa
YP_048625.1	Similar to Shigella boydii  glycosyl transferase wbdS SWALL:Q93CU5 (EMBL:AF402312) (351 aa) fasta scores: E(): 7.8e-11, 23.69% id in 363 aa, and to Vibrio vulnificus  glycosyltransferase protein vv12310 SWALL:AAO10686 (EMBL:AE016804) (368 aa) fasta scores: E(): 3.5e-94, 66.85% id in 362 aa
YP_048626.1	Similar to Vibrio vulnificus hypothetical protein vv12311 SWALL:AAO10687 (EMBL:AE016804) (134 aa) fasta scores: E(): 1e-16, 45.92% id in 135 aa.
YP_048627.1	Similar to Vibrio vulnificus hypothetical protein vv12312 SWALL:AAO10688 (EMBL:AE016804) (492 aa) fasta scores: E(): 5.5e-105, 53.91% id in 447 aa. No other significant database matches.
YP_048628.1	Similar to Escherichia coli k30 capsule biosynthesis cluster, partial sequence SWALL:Q9X4C2 (EMBL:AF104912) (172 aa) fasta scores: E(): 2.1e-15, 36.74% id in 166 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri  colanic acid biosynthesis acetyltransferase WcaB or b2058 or z3222 or ecs2863 or sf2122 SWALL:WCAB_ECOLI (SWALL:P77558) (162 aa) fasta scores: E(): 1.8e-14, 40% id in 150 aa
YP_048629.1	Similar to Escherichia coli, and Escherichia coli O157:H7 CcdA protein CcdA or LetA or protein H SWALL:CCDA_ECOLI (SWALL:P05702) (72 aa) fasta scores: E(): 2.8e-10, 53.52% id in 71 aa, and to Shigella flexneri, and Shigella flexneri 2a CcdA protein CcdA SWALL:Q99Q95 (EMBL:AL391753) (72 aa) fasta scores: E(): 5.2e-11, 53.52% id in 71 aa
YP_048630.1	Similar to Rhizobium loti hypothetical protein Msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 5.9e-06, 43.93% id in 66 aa
YP_048631.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 5.5e-15, 71.87% id in 64 aa, and to Bacteriophage Mu DNA-binding protein Ner or CII or 2 SWALL:NER_BPMU (SWALL:P06020) (74 aa) fasta scores: E(): 3.8e-13, 64.61% id in 65 aa. Also similar to ECA0686 (71.233% id. in 73 aa overlap), and to ECA0966 (91.139% id. in 79 aa overlap), and to ECA3206 (82.857% id. in 70 aa overlap.)
YP_048632.1	No significant database matches.Possible false CDS.
YP_048633.1	Similar to Yersinia pestis hypothetical protein ypo0874 SWALL:AAM86806 (EMBL:AJ414145) (380 aa) fasta scores: E(): 7.1e-116, 75.26% id in 380 aa
YP_048634.1	Similar to Salmonella typhi hypothetical protein Sty4521 SWALL:Q8Z1M3 (EMBL:AL627282) (344 aa) fasta scores: E(): 1.8e-79, 73.03% id in 293 aa
YP_048635.1	Weakly similar to Vibrio cholerae hypothetical protein Vc1703 SWALL:Q9KRD9 (EMBL:AE004248) (163 aa) fasta scores: E(): 5.4, 23.47% id in 115 aa, and to Trypanosoma cruzi  ATPase SWALL:Q9BJX3 (EMBL:AF324829) (201 aa) fasta scores: E(): 8.8, 25.73% id in 171 aa
YP_048636.1	No significant database matches. Possible false CDS.
YP_048637.1	Similar to Escherichia coli, and Shigella flexneri replicative DNA helicase DnaB or GroP or GrpA or b4052 or sf4154 SWALL:DNAB_ECOLI (SWALL:P03005) (471 aa) fasta scores: E(): 1.8e-87, 54.5% id in 455 aa
YP_048638.1	Similar to Salmonella typhi hypothetical protein Sty4523 SWALL:Q8Z1M1 (EMBL:AL627282) (599 aa) fasta scores: E(): 7.4e-73, 50.24% id in 609 aa
YP_048639.1	No significant database matches. Possible false CDS.
YP_048640.1	Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:Q9Z381 (EMBL:AL031866) (193 aa) fasta scores: E(): 3.1e-19, 37.27% id in 169 aa, and to Salmonella typhi hypothetical protein sty4526 SWALL:Q8Z1L8 (EMBL:AL627282) (185 aa) fasta scores: E(): 1.3e-32, 51.14% id in 174 aa
YP_048642.1	Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62321 (EMBL:AF440524) (387 aa) fasta scores: E(): 2.7e-25, 31.73% id in 375 aa, and to Salmonella typhi hypothetical protein Sty4528 sty4528 SWALL:Q8Z1L7 (EMBL:AL627282) (447 aa) fasta scores: E(): 3.9e-52, 46.35% id in 384 aa
YP_048643.1	Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62197 (EMBL:AF440523) (263 aa) fasta scores: E(): 4e-15, 31.71% id in 227 aa, and to Salmonella typhi hypothetical protein Sty4529 sty4529 SWALL:Q8Z1L6 (EMBL:AL627282) (259 aa) fasta scores: E(): 5.5e-35, 46.22% id in 225 aa
YP_048644.1	decatenates replicating daughter chromosomes
YP_048645.1	Similar to Bacteriophage Mx8 p84 SWALL:Q94MN5 (EMBL:AF396866) (57 aa) fasta scores: E(): 2.3, 30.61% id in 49 aa.
YP_048646.1	No significant database matches.
YP_048647.1	Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62175 (EMBL:AF440523) (332 aa) fasta scores: E(): 3.1e-14, 35.61% id in 146 aa, and to Salmonella typhi hypothetical protein Sty4534 SWALL:Q8Z1L5 (EMBL:AL627282) (149 aa) fasta scores: E(): 8.8e-33, 61.22% id in 147 aa
YP_048648.1	Similar to Ralstonia solanacearum orf c8 SWALL:O82963 (EMBL:AB015669) (143 aa) fasta scores: E(): 3.1e-33, 64.49% id in 138 aa, and to Synechocystis sp. hypothetical protein Sll1692 SWALL:P73707 (EMBL:D90908) (145 aa) fasta scores: E(): 2.4e-17, 38.29% id in 141 aa
YP_048649.1	Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 8.9e-32, 44.98% id in 449 aa, and to Yersinia pseudotuberculosis PilL SWALL:Q8KR32 (EMBL:AY047316) (356 aa) fasta scores: E(): 3.8e-31, 42.72% id in 440 aa
YP_048650.1	Similar to Escherichia coli, and Salmonella typhimurium PilM protein SWALL:O07371 (EMBL:AB021078) (145 aa) fasta scores: E(): 2.4e-05, 29.45% id in 146 aa.
YP_048651.1	Similar to Escherichia coli, and Salmonella typhimurium lipoprotein PilN SWALL:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): 8.1e-61, 40.71% id in 560 aa
YP_048652.1	Similar to Escherichia coli PilP protein SWALL:Q9F535 (EMBL:AP002527) (171 aa) fasta scores: E(): 0.12, 23.75% id in 160 aa, and to Salmonella typhi, and Salmonella dublin PilP SWALL:Q9RHF2 (EMBL:AF000001) (156 aa) fasta scores: E(): 0.21, 25.67% id in 148 aa.
YP_048653.1	Similar to Escherichia coli, and Salmonella typhimurium nucleotide-binding protein PilQ SWALL:O07375 (EMBL:AB021078) (517 aa) fasta scores: E(): 2.7e-42, 32.67% id in 508 aa, and to Yersinia pseudotuberculosis nucleotide-binding protein PilQ SWALL:Q8KR27 (EMBL:AY047316) (517 aa) fasta scores: E(): 4.4e-46, 33.99% id in 506 aa
YP_048654.1	Doubtful CDS. No significant database matches.
YP_048655.1	Similar to Escherichia coli, and Salmonella typhimurium integral membrane protein PilR SWALL:O07376 (EMBL:AB021078) (365 aa) fasta scores: E(): 7.1e-24, 29.68% id in 347 aa, and to Yersinia pseudotuberculosis integral membrane protein PilR SWALL:Q8KR26 (EMBL:AY047316) (369 aa) fasta scores: E(): 5.5e-23, 30.2% id in 341 aa
YP_048656.1	Similar to Yersinia pseudotuberculosis type IV prepilin PilS SWALL:Q8KR25 (EMBL:AY047316) (195 aa) fasta scores: E(): 1.2e-05, 31.84% id in 179 aa, and to Escherichia coli type IV prepilin PilS SWALL:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.013, 29.05% id in 179 aa.
YP_048657.1	Similar to Salmonella typhi, and Salmonella dublin PilT protein PilT or sty4548 SWALL:Q9ZIU8 (EMBL:AF000001) (158 aa) fasta scores: E(): 2.3e-28, 55.07% id in 138 aa, and to Escherichia coli, and Salmonella typhimurium PilT protein PilT SWALL:O07378 (EMBL:AB021078) (186 aa) fasta scores: E(): 7.9e-28, 45.88% id in 170 aa
YP_048658.1	Similar to Shigella sonnei prepilin peptidase PilU SWALL:Q9R2J4 (EMBL:AB021078) (218 aa) fasta scores: E(): 0.029, 26.33% id in 224 aa, and to Salmonella typhimurium prepilin peptidase pPilU SWALL:O07379 (EMBL:AB027308) (218 aa) fasta scores: E(): 0.025, 26.33% id in 224 aa
YP_048659.1	Similar to Escherichia coli PilV protein PilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 8.8e-12, 32.47% id in 428 aa, and to Salmonella typhi PilV or sty4550 or t4250 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 7.5e-13, 26.49% id in 453 aa
YP_048660.1	Similar to the C-terminal region of Escherichia coli PilV SWALL:AAL18837 (EMBL:AY258503) (454 aa) fasta scores: E(): 6.6e-10, 36.3% id in 157 aa, and to Salmonella typhi probable variable tail fibre protein sty3691 SWALL:Q8Z343 (EMBL:AL627279) (504 aa) fasta scores: E(): 1.5e-13, 39.58% id in 144 aa
YP_048661.1	Similar to Escherichia coli shufflon protein c' SWALL:SHU6_ECOLI (SWALL:P09750) (433 aa) fasta scores: E(): 5e-10, 44.15% id in 77 aa, and to Escherichia coli PilV protein pilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 5.7e-10, 43.42% id in 76 aa
YP_048662.1	Similar to Escherichia coli shufflon-specific DNA recombinase Rci SWALL:RCI1_ECOLI (SWALL:P10487) (384 aa) fasta scores: E(): 4.8e-91, 64.36% id in 376 aa
YP_048663.1	Similar to Salmonella typhi  exported protein PilK or sty4553 SWALL:Q8Z1K9 (EMBL:AL627282) (155 aa) fasta scores: E(): 2.2e-21, 45.2% id in 146 aa
YP_048664.1	Similar to Salmonella typhi hypothetical protein sty4554 or t4254 SWALL:Q8Z1K8 (EMBL:AL627282) (291 aa) fasta scores: E(): 1.3e-28, 36.89% id in 290 aa, and to Salmonella typhimurium TraE protein traE SWALL:Q9R2H6 (EMBL:AB027308) (274 aa) fasta scores: E(): 0.00014, 23.13% id in 268 aa
YP_048665.1	Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa
YP_048666.1	Similar to Proteus vulgaris hypothetical protein orf267 SWALL:Q8KJV9 (EMBL:AP004237) (138 aa) fasta scores: E(): 6.8e-24, 57.46% id in 134 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:Q8GHW2 (EMBL:AB088420) (169 aa) fasta scores: E(): 3.9e-05, 39.17% id in 97 aa
YP_048667.1	Similar to Oceanobacillus iheyensis hypothetical protein ob2071 SWALL:BAC14027 (EMBL:AP004599) (161 aa) fasta scores: E(): 1.4, 27.83% id in 97 aa
YP_048668.1	Similar to Salmonella typhi hypothetical protein sty1595 SWALL:Q8Z6W9 (EMBL:AL627270) (227 aa) fasta scores: E(): 1.4e-26, 38.49% id in 226 aa.
YP_048669.1	No significant database matches.
YP_048670.1	Similar to Salmonella typhi  membrane protein sty4557 SWALL:Q8Z1K7 (EMBL:AL627282) (304 aa) fasta scores: E(): 5e-13, 38.41% id in 315 aa
YP_048671.1	Similar to Salmonella typhi  exported protein sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 5.1e-52, 56.46% id in 232 aa
YP_048672.1	Similar to Salmonella typhi hypothetical protein sty4559 sty4559 or t4257 SWALL:Q8Z1K5 (EMBL:AL627282) (183 aa) fasta scores: E(): 3.2e-31, 50.28% id in 173 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:Q8GQ43 (EMBL:AF440523) (196 aa) fasta scores: E(): 1.9e-21, 41.56% id in 166 aa
YP_048673.1	Similar to Salmonella typhi hypothetical protein sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 1.5e-21, 46.1% id in 154 aa.
YP_048674.1	Similar to Salmonella typhi  membrane protein sty4561 SWALL:Q8Z1K3 (EMBL:AL627282) (189 aa) fasta scores: E(): 4.7e-36, 55.24% id in 181 aa.
YP_048675.1	No significant database matches.
YP_048676.1	Similar to Proteus vulgaris DNA transfer orf202 SWALL:Q8L280 (EMBL:AP004237) (655 aa) fasta scores: E(): 7.6e-30, 26.78% id in 687 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62159 (EMBL:AF440523) (729 aa) fasta scores: E(): 1.3e-165, 62.58% id in 703 aa, and to Providencia rettgeri TraD SWALL:Q8RL14 (EMBL:AY090559) (606 aa) fasta scores: E(): 1.2e-14, 30.74% id in 644 aa
YP_048677.1	Similar to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 1.3e-35, 41.27% id in 252 aa, and to Salmonella typhi  membrane protein sty4563 or t4261 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 4.6e-55, 57.95% id in 245 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62289 (EMBL:AF440524) (249 aa) fasta scores: E(): 1.2e-34, 39.68% id in 252 aa
YP_048678.1	No significant database matches.
YP_048679.1	No significant database matches.
YP_048680.1	Similar to Pseudomonas putida  transmembrane protein SWALL:Q8VMI7 (EMBL:AJ344068) (123 aa) fasta scores: E(): 1.5e-09, 44.44% id in 99 aa, and to Salmonella typhi hypothetical protein sty4564 sty4564 or t4262 SWALL:Q8Z1K0 (EMBL:AL627282) (90 aa) fasta scores: E(): 2.2e-14, 59.52% id in 84 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62149 (EMBL:AF440523) (127 aa) fasta scores: E(): 4.4e-09, 44.11% id in 102 aa
YP_048681.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPT8 (EMBL:AF440524) (77 aa) fasta scores: E(): 1e-05, 31.16% id in 77 aa, and to Salmonella typhi membrane protein sty4565 or t4263 SWALL:Q8Z1J9 (EMBL:AL627282) (79 aa) fasta scores: E(): 3.5e-12, 46.83% id in 79 aa, and to Pseudomonas putida  transmembrane protein SWALL:Q8VMI8 (EMBL:AJ344068) (79 aa) fasta scores: E(): 1.4e-05, 29.11% id in 79 aa
YP_048682.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPT9 (EMBL:AF440524) (120 aa) fasta scores: E(): 5e-10, 41.59% id in 113 aa, and to Pseudomonas putida hypothetical 12.9 kDa protein SWALL:Q8VMI9 (EMBL:AJ344068) (122 aa) fasta scores: E(): 1.2e-09, 46.8% id in 94 aa
YP_048683.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:Q8GPU0 (EMBL:AF440524) (131 aa) fasta scores: E(): 1.1e-07, 37.39% id in 123 aa, and to Xanthomonas axonopodis hypothetical protein Xac2271 SWALL:Q8PKA4 (EMBL:AE011864) (137 aa) fasta scores: E(): 4.4e-08, 37.3% id in 126 aa
YP_048684.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62145 (EMBL:AF440523) (230 aa) fasta scores: E(): 1.5e-46, 53.42% id in 219 aa, and to Salmonella typhi possible exported protein sty4568 or t4265 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.1e-66, 72.22% id in 216 aa, and to Pseudomonas putida hypothetical 29.5 kDa protein SWALL:Q8VMJ0 (EMBL:AJ344068) (267 aa) fasta scores: E(): 6.9e-46, 53.67% id in 218 aa
YP_048685.1	Similar to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 2.7e-39, 51.31% id in 267 aa, and to Salmonella typhi hypothetical protein sty4569 or t4266 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 3.2e-55, 57.19% id in 292 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62144 (EMBL:AF440523) (303 aa) fasta scores: E(): 4e-41, 45.24% id in 305 aa
YP_048686.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62143 (EMBL:AF440523) (472 aa) fasta scores: E(): 5.8e-46, 41.17% id in 493 aa, and to Salmonella typhi  exported protein sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 5e-67, 54.08% id in 514 aa, and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 6.1e-31, 40.14% id in 426 aa
YP_048688.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62280 (EMBL:AF440524) (139 aa) fasta scores: E(): 2e-22, 52.3% id in 130 aa, and to Salmonella typhi  lipoprotein sty4571 or t4267 SWALL:Q8Z1J4 (EMBL:AL627282) (147 aa) fasta scores: E(): 2.2e-28, 61.48% id in 135 aa
YP_048689.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62141 (EMBL:AF440523) (943 aa) fasta scores: E(): 1e-139, 50.22% id in 882 aa, and to Salmonella typhi hypothetical protein sty4573 sty4573 or t4270 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 3.1e-216, 67.64% id in 819 aa, and to Providencia rettgeri TraC SWALL:Q8RKZ1 (EMBL:AY090559) (799 aa) fasta scores: E(): 0.56, 20.93% id in 812 aa
YP_048690.1	Similar to Salmonella typhi hypothetical protein Sty4574 SWALL:Q8Z1J1 (EMBL:AL627282) (128 aa) fasta scores: E(): 5.8e-11, 38.28% id in 128 aa
YP_048691.1	Similar to Saccharomyces cerevisiae hypothetical 15.9 kDa protein ydr100W SWALL:Q03860 (EMBL:Z47746) (143 aa) fasta scores: E(): 0.59, 33.91% id in 115 aa
YP_048692.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62274 (EMBL:AF440524) (145 aa) fasta scores: E(): 9e-09, 39.65% id in 116 aa, and to Salmonella typhi hypothetical protein sty4575 sty4575 or t4272 SWALL:Q8Z1J0 (EMBL:AL627282) (130 aa) fasta scores: E(): 2.6e-19, 46.82% id in 126 aa
YP_048693.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62273 (EMBL:AF440524) (311 aa) fasta scores: E(): 7.4e-40, 49.22% id in 323 aa, and to Salmonella typhi hypothetical protein sty4576 sty4576 or t4273 SWALL:Q8Z1I9 (EMBL:AL627282) (322 aa) fasta scores: E(): 3e-85, 66.77% id in 319 aa
YP_048694.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62272 (EMBL:AF440524) (467 aa) fasta scores: E(): 7.4e-32, 38.82% id in 461 aa, and to Salmonella typhi hypothetical protein sty4577 sty4577 or t4274 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 7.1e-96, 61.5% id in 439 aa
YP_048695.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62271 (EMBL:AF440524) (109 aa) fasta scores: E(): 0.15, 28.18% id in 110 aa, and to Salmonella typhi  membrane protein sty4578 or t4275 SWALL:Q8Z1I7 (EMBL:AL627282) (110 aa) fasta scores: E(): 3.9e-11, 38.94% id in 95 aa
YP_048696.1	Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62133 (EMBL:AF440523) (515 aa) fasta scores: E(): 9.4e-85, 42.08% id in 518 aa, and to Salmonella typhi  membrane protein sty4579 or t4276 SWALL:Q8Z1I6 (EMBL:AL627282) (501 aa) fasta scores: E(): 7.8e-140, 63.54% id in 502 aa
YP_048697.1	Similar to Salmonella typhi  membrane protein sty4580 SWALL:Q8Z1I5 (EMBL:AL627282) (129 aa) fasta scores: E(): 7.1e-07, 30.15% id in 126 aa.
YP_048698.1	Similar to Escherichia coli PemK protein pemK SWALL:PEMK_ECOLI (SWALL:P13976) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa, and to Plasmid R100 plasmid stable inheritance protein pemK SWALL:BAA78898 (EMBL:AP000342) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa
YP_048699.1	Similar to Morganella morganii PemI pemI SWALL:O52204 (EMBL:AF027767) (97 aa) fasta scores: E(): 1.7, 27.55% id in 98 aa, and to Agrobacterium tumefaciens pemi protein pemi or atu0939 or agr_c_1711 SWALL:Q8UGU6 (EMBL:AE009059) (103 aa) fasta scores: E(): 0.1, 28.73% id in 87 aa
YP_048700.1	Similar to Bacillus coagulans restriction enzyme bgci alpha subunit bcgiA SWALL:T4BA_BACCO (SWALL:Q07605) (637 aa) fasta scores: E(): 1.3e-46, 31.12% id in 633 aa, and to Staphylococcus aureus bacteriophage phi-42 hypothetical 72.6 kDa protein SWALL:P95687 (EMBL:X94423) (639 aa) fasta scores: E(): 1.9e-42, 30.78% id in 653 aa
YP_048701.1	Similar to Bacillus coagulans restriction enzyme bgci beta subunit BcgiB SWALL:T4BB_BACCO (SWALL:Q07606) (341 aa) fasta scores: E(): 3.2e-05, 24.05% id in 345 aa, and to Pseudomonas syringae conserved domain protein pspto0285 SWALL:Q88AU8 (EMBL:AE016856) (360 aa) fasta scores: E(): 0.035, 23.75% id in 320 aa
YP_048702.1	No significant database matches.
YP_048703.1	Similar to the C-terminal region of Methanobacterium thermoautotrophicum conserved protein mth1804 SWALL:O27832 (EMBL:AE000934) (143 aa) fasta scores: E(): 2.1, 40% id in 50 aa
YP_048704.1	Similar to Yersinia pestis  DNA-binding prophage protein ypo1092 SWALL:Q8ZH21 (EMBL:AJ414146) (298 aa) fasta scores: E(): 4.4e-48, 48.79% id in 291 aa, and to Salmonella typhi hypothetical protein sty4586 SWALL:Q8Z1I0 (EMBL:AL627282) (306 aa) fasta scores: E(): 3e-46, 46.57% id in 292 aa, and to Salmonella typhimurium  integrase stm2760 SWALL:Q8ZMP4 (EMBL:AE008825) (291 aa) fasta scores: E(): 9.7e-46, 46.07% id in 293 aa.
YP_048705.1	Similar to Citrobacter freundii hypothetical protein orf3 SWALL:AAN87633 (EMBL:AF550415) (106 aa) fasta scores: E(): 3.3e-09, 38.46% id in 91 aa, and to Proteus vulgaris hypothetical protein orf45 SWALL:Q8KK91 (EMBL:AP004237) (99 aa) fasta scores: E(): 3.5e-05, 34.48% id in 87 aa, and to Salmonella typhimurium YdeA protein ydeA SWALL:Q8L240 (EMBL:AP005147) (196 aa) fasta scores: E(): 0.0055, 32.55% id in 86 aa
YP_048706.1	No significant database matches.
YP_048707.1	No significant database matches.
YP_048708.1	No significant database matches.
YP_048709.1	No significant database matches.
YP_048710.1	Similar to Vibrio cholerae DNA repair protein RadC homolog SWALL:RADC_VIBCH (SWALL:Q9KVC9) (224 aa) fasta scores: E(): 2.2e-28, 55.47% id in 137 aa, and to Escherichia coli DNA repair protein RadC SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 2.4e-26, 50.38% id in 129 aa.
YP_048711.1	Similar to Salmonella typhi hypothetical protein sty4589 SWALL:Q8Z1H7 (EMBL:AL627282) (194 aa) fasta scores: E(): 1.3e-17, 35.02% id in 197 aa. No other significant database matches.
YP_048712.1	Similar to Salmonella typhi hypothetical protein sty4590 SWALL:Q8Z1H6 (EMBL:AL627282) (98 aa) fasta scores: E(): 1.4e-11, 46.31% id in 95 aa. No other significant database matches.
YP_048713.1	Similar to Salmonella typhi hypothetical protein sty4591 SWALL:Q8Z1H5 (EMBL:AL627282) (152 aa) fasta scores: E(): 2.2e-30, 55.84% id in 154 aa. No other significant database matches.
YP_048714.1	Similar to Salmonella typhi hypothetical protein sty4592 SWALL:Q8Z1H4 (EMBL:AL627282) (649 aa) fasta scores: E(): 1.3e-115, 48.69% id in 651 aa.
YP_048715.1	Similar to Salmonella typhi hypothetical protein sty4593 SWALL:Q8Z1H3 (EMBL:AL627282) (302 aa) fasta scores: E(): 7.9e-40, 41.33% id in 300 aa
YP_048716.1	Similar to Salmonella typhi hypothetical protein Sty4594 SWALL:Q8Z1H2 (EMBL:AL627282) (299 aa) fasta scores: E(): 8.5e-43, 41.31% id in 288 aa.
YP_048717.1	Similar to the C-terminal region of Pseudomonas syringae oxidoreductase Cfa8 SWALL:O69071 (EMBL:AF061506) (565 aa) fasta scores: E(): 6.5e-122, 74.05% id in 397 aa, and to Streptomyces lavendulae hypothetical 45.2 kDa protein SWALL:Q9X5P6 (EMBL:AF127374) (414 aa) fasta scores: E(): 2.2e-82, 52.39% id in 397 aa
YP_048718.1	Similar to the N-terminal region of Pseudomonas syringae oxidoreductase Cfa8 SWALL:O69071 (EMBL:AF061506) (565 aa) fasta scores: E(): 8.2e-20, 45.11% id in 133 aa
YP_048719.1	Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor  type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa
YP_048720.1	Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa
YP_048721.1	Similar to Pseudomonas syringae coronafacic acid synthetase, ligase component cfa5 or pspto4685 SWALL:Q87W71 (EMBL:AE016872) (472 aa) fasta scores: E(): 4.8e-77, 48.72% id in 472 aa
YP_048722.1	Similar to Pseudomonas syringae coronafacic acid synthetase component cfa4 or pspto4684 SWALL:Q87W72 (EMBL:AE016872) (177 aa) fasta scores: E(): 4e-25, 46.38% id in 166 aa
YP_048723.1	Similar to Pseudomonas syringae cfa-beta-ketoacylsynthase Cfa3 SWALL:P72239 (EMBL:U56980) (379 aa) fasta scores: E(): 2.7e-75, 56.15% id in 374 aa, and to Streptomyces coelicolor 3-oxoacyl-(acyl-carrier-protein) synthase Sco0548 or scf11.28C SWALL:Q9RK62 (EMBL:AL939105) (428 aa) fasta scores: E(): 3.6e-25, 34.45% id in 415 aa
YP_048724.1	Similar to Pseudomonas syringae coronafacic acid dehydratase Cfa2 SWALL:CFA2_PSESG (SWALL:P72238) (165 aa) fasta scores: E(): 3.3e-49, 76.97% id in 165 aa
YP_048725.1	Similar to Pseudomonas syringae cfa-acyl carrier protein Cfa1 SWALL:P72237 (EMBL:U56980) (83 aa) fasta scores: E(): 6.8e-17, 60% id in 80 aa
YP_048726.1	Similar to Pseudomonas syringae coronafacate ligase Cfl SWALL:Q52375 (EMBL:U09027) (509 aa) fasta scores: E(): 1.4e-71, 37.3% id in 512 aa
YP_048727.1	Similar to Pseudomonas putida transcriptional regulator, LysR family pp5261 SWALL:AAN70826 (EMBL:AE016793) (308 aa) fasta scores: E(): 3.6e-24, 32.4% id in 287 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator GcvA SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 2.4e-16, 31.13% id in 273 aa.
YP_048728.1	Similar to Salmonella typhi  DNA helicase sty4664 SWALL:Q8Z1C6 (EMBL:AL627283) (503 aa) fasta scores: E(): 1.4e-115, 59.24% id in 476 aa and to Proteus vulgaris helicase orf193 SWALL:Q8L286 (EMBL:AP004237) (491 aa) fasta scores: E(): 2.6e-64, 39.24% id in 474 aa.
YP_048729.1	Similar to Pseudomonas aeruginosa hypothetical protein pa2496 SWALL:Q9I0Y6 (EMBL:AE004677) (171 aa) fasta scores: E(): 5.5e-16, 33.12% id in 157 aa.Note that there are no significant database matches to enterobacterial species.
YP_048730.1	Similar to Salmonella typhi hypothetical protein sty4665 SWALL:Q8Z1C5 (EMBL:AL627283) (529 aa) fasta scores: E(): 3.7e-24, 32.5% id in 523 aa, and to Pseudomonas syringae hypothetical 70.0 kDa protein SWALL:Q8RL93 (EMBL:AY083467) (638 aa) fasta scores: E(): 1.4e-12, 25.24% id in 622 aa
YP_048731.1	Similar to Pseudomonas aeruginosa XerC SWALL:Q9F771 (EMBL:AF285416) (427 aa) fasta scores: E(): 7.2e-36, 36.52% id in 334 aa, and to Salmonella typhi probable phage integrase sty4666 or t4357 SWALL:Q8Z1C4 (EMBL:AL627283) (337 aa) fasta scores: E(): 2.2e-62, 48.37% id in 339 aa
YP_048732.1	Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa
YP_048733.1	Similar to Pseudomonas aeruginosa hypothetical protein 6 pa2916 SWALL:Q9HZT1 (EMBL:AE004718) (197 aa) fasta scores: E(): 1.2e-35, 47.93% id in 194 aa, and to Pseudomonas putida membrane protein,  pp2429 SWALL:AAN68041 (EMBL:AE016783) (194 aa) fasta scores: E(): 1.9e-31, 44.61% id in 195 aa
YP_048734.1	Similar to Yersinia pestis  TetR-family regulatory protein ypo0341 SWALL:Q8ZIZ3 (EMBL:AJ414142) (191 aa) fasta scores: E(): 4.5e-49, 68.58% id in 191 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein YjdC SWALL:AAN45707 (EMBL:Z36905) (191 aa) fasta scores: E(): 1.3e-48, 64.92% id in 191 aa
YP_048735.1	two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm
YP_048736.1	copper binding protein required for copper tolerance; involved in resistance toward heavy metals
YP_048737.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_048738.1	catalyzes the formation of fumarate from aspartate
YP_048739.1	Similar to Escherichia coli FxsA protein FxsA or b4140 SWALL:FXSA_ECOLI (SWALL:P37147) (158 aa) fasta scores: E(): 1.3e-38, 68.35% id in 158 aa
YP_048740.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_048741.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_048742.1	catalyzes the formation of 4-hydroxybenzoate from chorismate
YP_048743.1	catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway
YP_048744.1	PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA
YP_048745.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri diacylglycerol kinase DgkA or b4042 or c5013 or z5641 or ecs5025 or sf4163 SWALL:KDGL_ECOLI (SWALL:P00556) (121 aa) fasta scores: E(): 7.4e-27, 61.34% id in 119 aa
YP_048746.1	Represses a number of genes involved in the response to DNA damage
YP_048747.1	unknown function; highly abundant protein in vivo; overexpressed under high NaCl concentrations; part of the sigma S regulon; non-essential
YP_048748.1	Acts as a negative controlling element, employing Zn(2+) as a cofactor to bind the operator of the repressed genes znuACB
YP_048749.1	Similar to Salmonella typhi hypothetical protein sty3416 SWALL:Q8Z3K9 (EMBL:AL627278) (233 aa) fasta scores: E(): 1.4e-65, 68.67% id in 233 aa, and to Escherichia coli hypothetical protein YhaK SWALL:YHAK_ECOLI (SWALL:P42624) (233 aa) fasta scores: E(): 2.8e-63, 67.38% id in 233 aa
YP_048750.1	Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo3545 SWALL:AAM83707 (EMBL:AJ414157) (297 aa) fasta scores: E(): 1.3e-97, 87.2% id in 297 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical transcriptional regulator YhaJ SWALL:YHAJ_ECOLI (SWALL:P42623) (298 aa) fasta scores: E(): 5.3e-97, 86.82% id in 296 aa
YP_048751.1	Similar to Salmonella typhi hypothetical protein Ssty3413 SWALL:Q8Z3L1 (EMBL:AL627278) (328 aa) fasta scores: E(): 3.6e-101, 75.53% id in 327 aa, and to Escherichia coli O157:H7  transferase YqjG SWALL:Q8XAH0 (EMBL:AE005539) (328 aa) fasta scores: E(): 1.9e-99, 74.61% id in 327 aa
YP_048752.1	Similar to Yersinia pestis hypothetical protein y3612 SWALL:AAM87160 (EMBL:AE013963) (136 aa) fasta scores: E(): 3.7e-38, 76.33% id in 131 aa, and to Salmonella typhimurium  membrane-associated protein YqjF SWALL:Q8ZLW9 (EMBL:AE008848) (161 aa) fasta scores: E(): 2.3e-37, 77.86% id in 131 aa
YP_048753.1	Similar to Escherichia coli hypothetical protein YqjK SWALL:YQJK_ECOLI (SWALL:Q47710) (99 aa) fasta scores: E(): 1.5e-17, 47.36% id in 95 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein YqjK SWALL:Q8XGR1 (EMBL:AE008848) (99 aa) fasta scores: E(): 4.6e-17, 45.26% id in 95 aa.
YP_048754.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein stm3230 or sty3410 SWALL:Q8XFR8 (EMBL:AE008848) (132 aa) fasta scores: E(): 8.1e-30, 67.69% id in 130 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqjE SWALL:YQJE_ECOLI (SWALL:P42618) (134 aa) fasta scores: E(): 1.3e-28, 64.39% id in 132 aa
YP_048755.1	Similar to Yersinia pestis  membrane protein ypo0570 SWALL:AAM87157 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.3e-22, 76.23% id in 101 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein stm3229 or sty3409 SWALL:Q8XEQ1 (EMBL:AE008848) (101 aa) fasta scores: E(): 9.6e-21, 71.28% id in 101 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqjD SWALL:YQJD_ECOLI (SWALL:P42617) (101 aa) fasta scores: E(): 2.2e-20, 69.3% id in 101 aa
YP_048756.1	Similar to Salmonella typhimurium, and Salmonella typhi  periplasmic protein stm3228 or sty3408 SWALL:Q8XF23 (EMBL:AE008848) (122 aa) fasta scores: E(): 1.4e-12, 49.15% id in 118 aa, and to Escherichia coli protein YqjC SWALL:YQJC_ECOLI (SWALL:P42616) (122 aa) fasta scores: E(): 1.6e-12, 50.83% id in 120 aa.
YP_048757.1	Similar to Salmonella typhimurium, and Salmonella typhi  outer membrane protein YqjB or stm3227 or sty3407 SWALL:Q8XF92 (EMBL:AE008848) (127 aa) fasta scores: E(): 8.8e-09, 36.43% id in 129 aa, and to Yersinia pestis membrane protein ypo0573 SWALL:Q8ZID2 (EMBL:AJ414143) (129 aa) fasta scores: E(): 1.6e-08, 46.31% id in 95 aa
YP_048758.1	Similar to Yersinia pestis  DedA-family membrane protein ypo0574 SWALL:Q8ZID1 (EMBL:AJ414143) (232 aa) fasta scores: E(): 1.2e-71, 77.29% id in 229 aa, and to Salmonella typhimurium  DedA family, membrane protein stm3226 SWALL:Q8ZLX0 (EMBL:AE008848) (220 aa) fasta scores: E(): 2.8e-67, 76.27% id in 215 aa.
YP_048759.1	regulates the exuT, uxaCA and uxuRAB operons which encode genes involved in hexuronate utilization.
YP_048760.1	Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 6.4e-122, 88.78% id in 330 aa, and to Ralstonia solanacearum ExuT SWALL:Q93AS8 (EMBL:AF417111) (439 aa) fasta scores: E(): 2.8e-99, 56.39% id in 422 aa
YP_048761.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_048762.1	catalyzes the formation of D-tagaturonate from D-altronate
YP_048763.1	Similar to Escherichia coli altronate hydrolase UxaA SWALL:UXAA_ECOLI (SWALL:P42604) (495 aa) fasta scores: E(): 4.1e-163, 80.24% id in 496 aa
YP_048764.1	Similar to Yersinia pestis  membrane protein ypo0582 or y3597 SWALL:AAM87145 (EMBL:AJ414143) (176 aa) fasta scores: E(): 3.4e-49, 73.86% id in 176 aa, and to Escherichia coli hypothetical protein ygjv ygjv or b3090 SWALL:YGJV_ECOLI (SWALL:P42603) (183 aa) fasta scores: E(): 1.2e-47, 67.81% id in 174 aa
YP_048765.1	Weakly similar to Schizosaccharomyces pombe  DNA mismatch repair protein, mlh1 homolog spbc1703.04 SWALL:Q9P7W6 (EMBL:AL136536) (684 aa) fasta scores: E(): 0.11, 21.48% id in 498 aa, and to Neisseria meningitidis hypothetical protein Nma0428 nma0428 SWALL:Q9JWD7 (EMBL:AL162753) (548 aa) fasta scores: E(): 0.18, 22.37% id in 523 aa
YP_048766.1	Similar to Vibrio cholerae hypothetical protein vca0440 SWALL:Q9KMC4 (EMBL:AE004377) (148 aa) fasta scores: E(): 2.6e-05, 28.67% id in 143 aa, and to Salmonella typhi  membrane protein sty4669 SWALL:Q8Z1C1 (EMBL:AL627283) (150 aa) fasta scores: E(): 4.2e-05, 30.3% id in 132 aa.
YP_048767.1	involved in the import of serine and threonine coupled with the import of sodium
YP_048768.1	Similar to Salmonella typhimurium  resistance protein stm3224 SWALL:Q8ZLX2 (EMBL:AE008848) (322 aa) fasta scores: E(): 7e-101, 76.65% id in 317 aa, and to Escherichia coli hypothetical protein YgjT SWALL:YGJT_ECOLI (SWALL:P42601) (321 aa) fasta scores: E(): 3.3e-95, 73.12% id in 320 aa
YP_048769.1	Similar to Escherichia coli O6 hypothetical oxidoreductase YgjR SWALL:AAN82290 (EMBL:AE016767) (334 aa) fasta scores: E(): 2.7e-91, 70.76% id in 325 aa.
YP_048770.1	Similar to Escherichia coli  ribosomal RNA small subunit methyltransferase D YgjO or SWALL:RSMD_ECOLI (SWALL:P42596) (378 aa) fasta scores: E(): 8.5e-93, 61.47% id in 379 aa, and to Yersinia pestis  methyltransferase ypo0588 SWALL:Q8ZIB9 (EMBL:AJ414143) (395 aa) fasta scores: E(): 1.5e-98, 64.64% id in 379 aa
YP_048771.1	Similar to Escherichia coli 2,4-dienoyl-CoA reductase [NADPH] FadH or b3081 SWALL:FADH_ECOLI (SWALL:P42593) (671 aa) fasta scores: E(): 1e-145, 69.35% id in 682 aa, and to Pseudomonas putida 2,4-dienoyl-coA reductase FadH SWALL:AAN67622 (EMBL:AE016781) (693 aa) fasta scores: E(): 8.6e-160, 64.12% id in 683 aa.
YP_048772.1	Similar to Yersinia pestis hypothetical y1229 SWALL:AAM84804 (EMBL:AE013726) (134 aa) fasta scores: E(): 6.4e-07, 36.55% id in 93 aa
YP_048773.1	periplasmic protein induced by stress response via Cpx and BaeSR system; similar to CpxP
YP_048774.1	Similar to Pseudomonas putida GGDEF domain protein pp3932 SWALL:AAN69526 (EMBL:AE016788) (402 aa) fasta scores: E(): 3e-26, 29.21% id in 397 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YddV SWALL:YDDV_ECOLI (SWALL:P77793) (460 aa) fasta scores: E(): 6.6e-17, 33.83% id in 198 aa.
YP_048775.1	Similar to Rhizobium loti hypothetical protein mlr5326 SWALL:Q98C23 (EMBL:AP003006) (130 aa) fasta scores: E(): 2.2e-14, 50.82% id in 122 aa, and to Anabaena sp. hypothetical protein All7633 all7633 SWALL:Q8ZS79 (EMBL:AP003602) (242 aa) fasta scores: E(): 3.2e-06, 41% id in 100 aa.
YP_048776.1	Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 2.4e-60, 42.76% id in 622 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 6.6e-60, 42.09% id in 639 aa
YP_048777.1	Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 3.8e-144, 71.67% id in 459 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglB or b3721 SWALL:BGLB_ECOLI (SWALL:P11988) (470 aa) fasta scores: E(): 4.5e-139, 67.74% id in 462 aa
YP_048778.1	Similar to an internal region of Fusarium oxysporum f. sp. radicis-lycopersici exopolygalacturonase pg1 SWALL:Q9UUT3 (EMBL:AF136444) (464 aa) fasta scores: E(): 3.2, 33.87% id in 62 aa
YP_048779.1	Similar to the N-terminal region of Aeromonas hydrophila LysR-type transcriptional regulator BdhR SWALL:Q93N31 (EMBL:AF388671) (320 aa) fasta scores: E(): 0.063, 30.1% id in 93 aa
YP_048780.1	Similar to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 2.4e-13, 31.42% id in 420 aa, and to Escherichia coli InT protein SWALL:Q93K89 (EMBL:X16664) (386 aa) fasta scores: E(): 1.1e-05, 26.36% id in 239 aa, and to Bacteriophage D3 integrase orf35 SWALL:Q9T1P3 (EMBL:AF165214) (369 aa) fasta scores: E(): 0.0047, 28.4% id in 176 aa.
YP_048781.1	No significant database matches.
YP_048782.1	Similar to Oceanobacillus iheyensis hypothetical conserved protein ob3324 SWALL:BAC15280 (EMBL:AP004604) (64 aa) fasta scores: E(): 8.4, 32.2% id in 59 aa, and to Vibrio vulnificus hypothetical protein vv12463 SWALL:AAO10827 (EMBL:AE016805) (78 aa) fasta scores: E(): 9.9, 33.89% id in 59 aa
YP_048783.1	No significant database matches.
YP_048784.1	Weakly similar to Pseudomonas aeruginosa hypothetical protein Pa0014 SWALL:Q9I7B2 (EMBL:AE004441) (90 aa) fasta scores: E(): 4, 28.78% id in 66 aa
YP_048785.1	No significant database matches.
YP_048786.1	Similar to bacteriophage P4 derepression protein epsiloN SWALL:VEPS_BPP4 (SWALL:P05463) (95 aa) fasta scores: E(): 3.4e-08, 43.15% id in 95 aa.
YP_048787.1	Similar to Bacteriophage phi CTX orf37 SWALL:Q9ZXI8 (EMBL:AB008550) (895 aa) fasta scores: E(): 3.8e-96, 42.27% id in 906 aa, and to Ralstonia solanacearum hypothetical phage-related protein rsc1898 or rs03464 SWALL:Q8XY65 (EMBL:AL646067) (902 aa) fasta scores: E(): 4.5e-170, 49.1% id in 894 aa
YP_048788.1	Similar to Yersinia pestis  DNA binding protein ypo0883 SWALL:Q8ZHK8 (EMBL:AJ414145) (120 aa) fasta scores: E(): 3.5e-14, 39.51% id in 124 aa, and to Bacteriophage phiE125 gp68 68 SWALL:Q8W6N2 (EMBL:AF447491) (128 aa) fasta scores: E(): 0.053, 28.84% id in 104 aa
YP_048789.1	Similar to Bacteriophage phiE125 gp69 69 SWALL:Q8W6N1 (EMBL:AF447491) (85 aa) fasta scores: E(): 0.0057, 36.84% id in 76 aa, and to Yersinia pestis hypothetical protein Ypo0884 SWALL:Q8ZHK7 (EMBL:AJ414145) (86 aa) fasta scores: E(): 1.9e-10, 48.31% id in 89 aa
YP_048790.1	No significant database matches.
YP_048791.1	No significant database matches.
YP_048792.1	Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 2.1, 48% id in 25 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 or t4523 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 2.3, 52% id in 25 aa
YP_048793.1	Similar to Bacteriophage phi CTX orf34 SWALL:Q9ZXJ1 (EMBL:AB008550) (97 aa) fasta scores: E(): 0.11, 36.61% id in 71 aa, and to Escherichia coli O157:H7  activator encoded in prophage cp-933i z0332 or ecs0296 SWALL:Q8X7J1 (EMBL:AE005204) (90 aa) fasta scores: E(): 0.66, 28.3% id in 53 aa
YP_048794.1	Similar to Escherichia coli, and Escherichia coli O6 G/U mismatch-specific DNA glycosylase Mug or b3068 or c3822 SWALL:MUG_ECOLI (SWALL:P43342) (168 aa) fasta scores: E(): 3.2e-40, 61.35% id in 163 aa
YP_048795.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria
YP_048796.1	synthesizes RNA primers at the replication forks
YP_048797.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_048798.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_048799.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_048800.1	oxidizes malate to oxaloacetate
YP_048801.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 5.7e-20, 70.88% id in 79 aa. Also similar to ECA0513 (71.233% id. in 73 aa overlap), and to ECA0966 (72.368% id. in 76 aa overlap), and to ECA3206 (76.119% id. in 67 aa overlap.)
YP_048802.1	Similar to Yersinia pestis hypothetical protein ypo3514 SWALL:AAM84258 (EMBL:AJ414157) (133 aa) fasta scores: E(): 1.9e-17, 47.32% id in 112 aa and to bacteriophage D3112 transposase A SWALL:Q38013 (EMBL:X87627) (690 aa) fasta scores: E(): 0.00026, 33.69% id in 92 aa.
YP_048803.1	Similar to Yersinia pestis hypothetical protein ypo3514 SWALL:Q8ZBA4 (EMBL:AJ414157) (133 aa) fasta scores: E(): 9.5e-19, 45.83% id in 120 aa, and to Bacteriophage D108 repressor protein CI SWALL:RPC1_BPD10 (SWALL:P07040) (174 aa) fasta scores: E(): 0.00012, 42.37% id in 59 aa
YP_048804.1	Similar to Escherichia coli, and Shigella flexneri octaprenyl-diphosphate synthase IspB or Cel or b3187 or sf3227 SWALL:ISPB_ECOLI (SWALL:P19641) (323 aa) fasta scores: E(): 7.9e-100, 83.54% id in 322 aa
YP_048805.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L21 RplU SWALL:RL21_ECOLI (SWALL:P02422) (103 aa) fasta scores: E(): 2.4e-34, 92.23% id in 103 aa.
YP_048806.1	involved in the peptidyltransferase reaction during translation
YP_048807.1	Similar to Yersinia pestis  membrane protein ypo3510 SWALL:AAM84262 (EMBL:AJ414157) (328 aa) fasta scores: E(): 3e-95, 78.77% id in 311 aa, and to Salmonella typhi  membrane protein sty3481 SWALL:Q8Z3H0 (EMBL:AL627278) (321 aa) fasta scores: E(): 1.3e-92, 77.24% id in 312 aa
YP_048808.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_048809.1	penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains
YP_048810.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_048811.1	Similar to Salmonella typhimurium, and Salmonella typhi  RNA-binding protein containing kh domain stm3298 or sty3476 SWALL:Q8XG58 (EMBL:AE008852) (110 aa) fasta scores: E(): 3.7e-30, 88.66% id in 97 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YhbY SWALL:YHBY_ECOLI (SWALL:P42550) (97 aa) fasta scores: E(): 5.2e-30, 88.66% id in 97 aa.
YP_048812.1	Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit
YP_048813.1	inner membrane metalloprotease; may be involved in degradation of aberrant cytoplasmic and membrane proteins
YP_048814.1	catalyzes the formation of dihydropteroate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate
YP_048815.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_048816.1	Doubtful CDS. No significant database matches.
YP_048817.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein-export membrane protein SecG or b3175 or c3931 or z4537 or ecs4054 SWALL:SECG_ECOLI (SWALL:P33582) (110 aa) fasta scores: E(): 4e-27, 77.27% id in 110 aa
YP_048818.1	No significant database matches.
YP_048819.1	Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa
YP_048820.1	Partial CDS. Similar to an internal region of Anabaena sp. peptide synthetase all2644 SWALL:Q8YTR9 (EMBL:AP003590) (2617 aa) fasta scores: E(): 0.00014, 34.44% id in 90 aa, and to Streptomyces coelicolor cda peptide synthetase i cdapsi or sco3230 or sce63.03C SWALL:Q9Z4X6 (EMBL:AL939115) (7463 aa) fasta scores: E(): 0.00077, 36% id in 100 aa
YP_048821.1	Partial CDS. Similar to Pectobacterium carotovorum subsp. carotovorum hypothetical protein SWALL:Q8GCQ9 (EMBL:AY167733) (197 aa) fasta scores: E(): 1.1e-08, 80.64% id in 31 aa
YP_048822.1	Similar to Pectobacterium carotovorum subsp. carotovorum virulence regulator Evr SWALL:AAN86997 (EMBL:AY167733) (204 aa) fasta scores: E(): 4.8e-39, 92.98% id in 114 aa. This CDS is truncated at the N-terminus relative to its orthologue in Pectobacterium carotovorum subsp. carotovorum.
YP_048823.1	Doubtful CDS. No significant database matches.
YP_048824.2	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_048825.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_048826.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_048827.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_048828.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_048829.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_048830.1	Similar to Escherichia coli polyribonucleotide nucleotidyltransferase Pnp or b3164 SWALL:PNP_ECOLI (SWALL:P05055) (711 aa) fasta scores: E(): 0, 88.88% id in 702 aa
YP_048831.1	lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing
YP_048832.1	participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division
YP_048833.1	Similar to Yersinia pestis hypothetical protein ypo3480 SWALL:Q8ZBD6 (EMBL:AJ414157) (292 aa) fasta scores: E(): 2.5e-100, 79.72% id in 291 aa, and to Escherichia coli hypothetical protein YhbV SWALL:YHBV_ECOLI (SWALL:P45475) (298 aa) fasta scores: E(): 3.9e-93, 75.86% id in 290 aa.
YP_048834.1	Similar to Proteus mirabilis STM-protease A SWALL:Q9ZA85 (EMBL:AF088981) (334 aa) fasta scores: E(): 3.6e-114, 82.03% id in 334 aa, and to Escherichia coli O157:H7  collagenase yhbu SWALL:Q8XA91 (EMBL:AE005544) (331 aa) fasta scores: E(): 1.3e-122, 87.61% id in 331 aa.
YP_048835.1	Similar to Yersinia pestis  lipid carrier protein ypo3477 SWALL:Q8ZBD9 (EMBL:AJ414157) (173 aa) fasta scores: E(): 3.9e-49, 74.71% id in 174 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YhbT SWALL:YHBT_ECOLI (SWALL:P45474) (174 aa) fasta scores: E(): 6.7e-44, 71.25% id in 160 aa
YP_048836.1	Similar to Yersinia pestis  acetyltransferase ypo3476 SWALL:AAM84296 (EMBL:AJ414157) (168 aa) fasta scores: E(): 2.7e-45, 70.55% id in 180 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical acetyltransferase YhbS SWALL:YHBS_ECOLI (SWALL:P45473) (167 aa) fasta scores: E(): 2.1e-40, 64.24% id in 179 aa.
YP_048837.1	Similar to Yersinia pestis hypothetical protein ypo3475 SWALL:YY75_YERPE (SWALL:Q8ZBE1) (95 aa) fasta scores: E(): 4.5e-25, 80% id in 85 aa, and to Escherichia coli hypothetical protein YhbQ SWALL:YHBQ_ECOLI (SWALL:P45472) (100 aa) fasta scores: E(): 1.4e-18, 70.51% id in 78 aa.
YP_048838.1	Doubtful CDS. No significant database matches.
YP_048839.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_048840.1	Catalyzes the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate
YP_048841.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_048842.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_048843.1	Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor FcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.6e-175, 59.78% id in 756 aa, and to Bordetella bronchiseptica ferric siderophore receptor BfrB SWALL:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 1.2e-99, 39.86% id in 725 aa
YP_048844.1	Similar to Yersinia pestis  exported protein ypo3993 SWALL:Q8ZA27 (EMBL:AJ414160) (159 aa) fasta scores: E(): 4.2e-40, 67.08% id in 158 aa.
YP_048845.1	alanine acetyltransferase that specifically acetylates ribosomal protein S18
YP_048846.1	with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB
YP_048847.1	16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit
YP_048848.1	Similar to Pseudomonas aeruginosa probable oxidoreductase pa2535 SWALL:Q9I0U9 (EMBL:AE004681) (331 aa) fasta scores: E(): 2.8e-91, 70.6% id in 330 aa, and to Salmonella typhi  aldo/keto reductase sty0158 SWALL:Q8Z9G1 (EMBL:AL627265) (329 aa) fasta scores: E(): 1.5e-88, 69.69% id in 330 aa.
YP_048849.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2534 SWALL:Q9I0V0 (EMBL:AE004681) (303 aa) fasta scores: E(): 9.2e-53, 51.16% id in 301 aa
YP_048850.1	Similar to Yersinia pestis hypothetical y3754 SWALL:AAM87300 (EMBL:AE013978) (108 aa) fasta scores: E(): 8.3e-16, 46.66% id in 90 aa, and to Yersinia pestis membrane protein ypo0426 SWALL:Q8ZIR4 (EMBL:AJ414142) (79 aa) fasta scores: E(): 2.3e-13, 50.68% id in 73 aa.
YP_048851.1	Similar to Klebsiella terrigena bud operon transcriptional regulator BudR SWALL:BUDR_KLETE (SWALL:P52666) (290 aa) fasta scores: E(): 1.3e-47, 48.44% id in 289 aa, and to Salmonella typhimurium transcriptional regulator StmR SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 2.6e-35, 37.71% id in 289 aa
YP_048852.1	Similar to Enterobacter aerogenes alpha-acetolactate decarboxylase aldC SWALL:ALDC_ENTAE (SWALL:P05361) (260 aa) fasta scores: E(): 6.2e-63, 59.76% id in 251 aa, and to Klebsiella terrigena alpha-acetolactate decarboxylase budA SWALL:ALDC_KLETE (SWALL:Q04518) (259 aa) fasta scores: E(): 1.1e-62, 58.26% id in 254 aa
YP_048853.1	catalyzes the formation of 2-acetolactate from pyruvate in stationary phase
YP_048854.1	Similar to Escherichia coli, and Escherichia coli O157:H7 lactaldehyde reductase FucO or b2799 or z4116 or ecs3659 SWALL:FUCO_ECOLI (SWALL:P11549) (383 aa) fasta scores: E(): 1.5e-104, 73.69% id in 384 aa
YP_048855.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_048856.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_048857.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_048858.1	Similar to Bradyrhizobium japonicum transcriptional regulatory protein bll5370 SWALL:BAC50635 (EMBL:AP005954) (128 aa) fasta scores: E(): 2.4e-12, 48.51% id in 101 aa, and to Anabaena sp. hypothetical proteinalr2106 SWALL:Q8YV75 (EMBL:AP003588) (110 aa) fasta scores: E(): 6e-12, 41.5% id in 106 aa. Note that there are no significant database matches to enterobacterial species.
YP_048859.1	Similar to Agrobacterium tumefaciens NAD/NADP dependent oxidoreductase atu5391 or agr_pat_564 SWALL:Q8UJT4 (EMBL:AE008960) (286 aa) fasta scores: E(): 4.9e-43, 52.4% id in 250 aa, and to Bradyrhizobium japonicum oxidoreductase bll5108 SWALL:BAC50373 (EMBL:AP005953) (281 aa) fasta scores: E(): 1e-29, 43.21% id in 243 aa
YP_048860.1	Similar to Bradyrhizobium japonicum protein bll4140 SWALL:BAC49405 (EMBL:AP005950) (325 aa) fasta scores: E(): 4.8e-47, 48.18% id in 276 aa, and to Bifidobacterium longum sugar permease of ABC transporter system bl0189 SWALL:AAN24043 (EMBL:AE014636) (317 aa) fasta scores: E(): 7.2e-31, 34.73% id in 285 aa. Note that there are no significant database matches to enterobacterial species.
YP_048861.1	Similar to Bradyrhizobium japonicum protein bll4139 SWALL:BAC49404 (EMBL:AP005950) (289 aa) fasta scores: E(): 2.1e-57, 52.98% id in 268 aa, and to Oceanobacillus iheyensis sugar binding-protein dependent transporter system permease ob3422 SWALL:BAC15378 (EMBL:AP004604) (269 aa) fasta scores: E(): 4.8e-32, 33.58% id in 265 aa
YP_048862.1	Similar to Ralstonia solanacearum hypothetical protein rsc1795 SWALL:Q8XYG3 (EMBL:AL646066) (282 aa) fasta scores: E(): 8.5e-24, 31.4% id in 277 aa, and to Streptomyces avermitilis  cyclic nucleotide phosphodiesterase SWALL:Q93GX3 (EMBL:AB070957) (257 aa) fasta scores: E(): 3.8e-15, 26.64% id in 259 aa.
YP_048863.1	Similar to Escherichia coli sn-glycerol-3-phosphate transport ATP-binding protein UgpC or b3450 SWALL:UGPC_ECOLI (SWALL:P10907) (356 aa) fasta scores: E(): 7.9e-56, 47.05% id in 357 aa, and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK or stm4230 SWALL:MALK_SALTY (SWALL:P19566) (369 aa) fasta scores: E(): 6.8e-54, 47.58% id in 372 aa
YP_048864.1	Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol-3-phosphate-binding periplasmic protein precursor UgpB or b3453 or z4822 or ecs4299 SWALL:UGPB_ECOLI (SWALL:P10904) (438 aa) fasta scores: E(): 4e-21, 27.46% id in 386 aa, and to Bradyrhizobium japonicum Bll4138 protein bll4138 SWALL:BAC49403 (EMBL:AP005950) (444 aa) fasta scores: E(): 5.7e-71, 47.5% id in 440 aa
YP_048865.1	lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments
YP_048866.1	Similar to Escherichia coli alpha-galactosidase RafA SWALL:RAFA_ECOLI (SWALL:P16551) (708 aa) fasta scores: E(): 7.5e-208, 67.66% id in 705 aa.
YP_048867.1	Similar to Escherichia coli raffinose operon repressor RafR SWALL:RAFR_ECOLI (SWALL:P21867) (335 aa) fasta scores: E(): 7.5e-64, 52.87% id in 331 aa
YP_048868.1	Similar to Vibrio pelagius hypothetical protein SWALL:AAN86353 (EMBL:AY014401) (195 aa) fasta scores: E(): 6.6e-31, 48.37% id in 184 aa, and to Deinococcus radiodurans hypothetical protein dr0704 SWALL:Q9RWG4 (EMBL:AE001927) (198 aa) fasta scores: E(): 1.2e-20, 38.77% id in 196 aa. Note that there are no significant database matches to enterobacterial species.
YP_048869.1	Similar to Bacillus cereus hemolysin III SWALL:HLY3_BACCE (SWALL:P54176) (219 aa) fasta scores: E(): 3.8e-35, 44.6% id in 213 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yqfa or b2899 or c3480 or z4237 or ecs3771 or sf2885 SWALL:YQFA_ECOLI (SWALL:Q46827) (219 aa) fasta scores: E(): 4e-68, 83.98% id in 206 aa
YP_048870.1	physiological role is not clear; not essential for growth but mutants grow poorly; mutations suppress hda null mutations; may be involved in regulation of ATP-DnaA levels; may also be involved in regulation of tRNA modifications; can bind folic acid and tetrahydrofolate; forms a three domain ring-like structure with a central channel; structurally similar to DMGO protein from A. globiformis; shows sequence similarity to yeast CAF17 transcriptional regulator
YP_048871.1	Similar to Yersinia pestis hypothetical protein ypo0897 SWALL:Q8ZHJ5 (EMBL:AJ414145) (88 aa) fasta scores: E(): 4.2e-29, 77.27% id in 88 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YgfY SWALL:YGFY_ECOLI (SWALL:Q46825) (88 aa) fasta scores: E(): 3.4e-28, 73.86% id in 88 aa.
YP_048872.1	Similar to Escherichia coli hypothetical protein YgfX SWALL:YGFX_ECOLI (SWALL:Q46824) (135 aa) fasta scores: E(): 3.6e-29, 56.39% id in 133 aa.
YP_048873.1	Similar to Salmonella typhimurium  SAM-dependent methyltransferase stm0826 SWALL:Q8ZQN4 (EMBL:AE008734) (308 aa) fasta scores: E(): 9.1e-81, 62.54% id in 307 aa, and to Escherichia coli hypothetical protein YbiN SWALL:YBIN_ECOLI (SWALL:P75782) (308 aa) fasta scores: E(): 1e-79, 61.23% id in 307 aa.
YP_048874.1	Similar to Xanthomonas campestris hypothetical protein Xcc0818 SWALL:Q8PCB6 (EMBL:AE012181) (122 aa) fasta scores: E(): 2.6e-06, 38.46% id in 104 aa. Note that there are no other significant database matches.
YP_048875.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic
YP_048876.1	No significant database matches. Possible false CDS.
YP_048877.1	Similar to Xanthomonas axonopodis hypothetical protein xac2605 SWALL:Q8PJD0 (EMBL:AE011901) (147 aa) fasta scores: E(): 5.7e-05, 40.54% id in 74 aa, and to Caulobacter crescentus hypothetical protein cc2994 SWALL:Q9A449 (EMBL:AE005962) (137 aa) fasta scores: E(): 8.4e-05, 35.08% id in 114 aa. Note that there are no significant database matches to enterobacterial species.
YP_048878.1	Similar to Xanthomonas campestris hypothetical protein xcc3622 SWALL:Q8P4T4 (EMBL:AE012483) (232 aa) fasta scores: E(): 5.2e-16, 36.15% id in 177 aa, and to Xanthomonas axonopodis hypothetical protein xac0573 SWALL:Q8PPW0 (EMBL:AE011684) (232 aa) fasta scores: E(): 7.7e-15, 35.02% id in 177 aa. Note that the only significant database matches are to Xanthomonas campestris.
YP_048879.1	Similar to Xanthomonas campestris hypothetical protein xcc3298 SWALL:Q8P5N8 (EMBL:AE012447) (171 aa) fasta scores: E(): 3e-10, 33.33% id in 174 aa, and to Xanthomonas campestris hypothetical protein xcc3128 SWALL:Q8P649 (EMBL:AE012428) (182 aa) fasta scores: E(): 3.2e-10, 34.44% id in 180 aa. Note that the only significant database matches are to Xanthomonas spp.
YP_048880.1	No significant database matches.
YP_048881.1	Similar to Shigella flexneri  transport protein sf3555 SWALL:AAN45008 (EMBL:AE015363) (440 aa) fasta scores: E(): 7.7e-133, 82.08% id in 441 aa, and to Escherichia coli hypothetical metabolite transport protein YhjE SWALL:YHJE_ECOLI (SWALL:P37643) (440 aa) fasta scores: E(): 2.6e-132, 81.63% id in 441 aa and to Escherichia coli shikimate transporter ShiA SWALL:SHIA_ECOLI (SWALL:P76350) (438 aa) fasta scores: E(): 1.5e-47, 36.01% id in 447 aa
YP_048882.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_048883.1	DsbC; periplasmic protein with protein disulfide isomerase activity; this protein also shows disulfide oxidoreductase activity
YP_048884.1	5'-3' single-stranded-DNA-specific exonuclease
YP_048885.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_048886.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_048887.1	Similar to Pseudomonas aeruginosa ChpD SWALL:O87004 (EMBL:U79580) (264 aa) fasta scores: E(): 8.8e-26, 38.49% id in 239 aa, and to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 6.6e-15, 32.51% id in 243 aa. Note that there are no significant database matches to enterobacterial species.
YP_048888.1	Similar to Pseudomonas aeruginosa hypothetical protein pa1620 SWALL:Q9I3A2 (EMBL:AE004589) (213 aa) fasta scores: E(): 5.3e-07, 27.31% id in 216 aa. Note that there are no significant database matches to enterobacterial species.
YP_048889.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phage shock protein a pspa or b1304 or z2482 or ecs1881 or sf1309 SWALL:PSPA_ECOLI (SWALL:P23853) (221 aa) fasta scores: E(): 0.00016, 20% id in 225 aa, and to Oceanobacillus iheyensis phage shock protein a ob0940 SWALL:BAC12896 (EMBL:AP004596) (223 aa) fasta scores: E(): 7.9e-11, 26.87% id in 227 aa
YP_048890.1	No significant database matches.
YP_048891.1	Similar to Bacillus subtilis hypothetical protein YybH yybH SWALL:YYBH_BACSU (SWALL:P37496) (129 aa) fasta scores: E(): 3.6e-22, 53.22% id in 124 aa. Note that there are no significant database matches to enterobacterial species.
YP_048892.1	Similar to Xanthomonas campestris regulatory protein RpfI SWALL:Q8P9L0 (EMBL:AE012287) (342 aa) fasta scores: E(): 1.6e-36, 37.79% id in 344 aa. The Xanthomonas campestris RpfI is thought to be involved in the regulation of pathogenicity factor production. Note that there are no significant database matches to enterobacterial species.
YP_048893.2	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(palmitoleoyl)-lipid IVA in cells subjected to cold shock
YP_048894.1	No significant database matches.
YP_048895.1	Similar to Yersinia pestis  xanthine/uracil permease ypo3629 or y0239 SWALL:Q8ZB00 (EMBL:AJ414158) (451 aa) fasta scores: E(): 7.4e-142, 87.58% id in 451 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yjcd yjcd or b4064 or z5663 or ecs5046 SWALL:YJCD_ECOLI (SWALL:P32702) (449 aa) fasta scores: E(): 4.7e-133, 82.58% id in 448 aa
YP_048896.1	Similar to Yersinia pestis  sodium/hydrogen exchanger ypo3630 SWALL:Q8ZAZ9 (EMBL:AJ414158) (549 aa) fasta scores: E(): 4.4e-165, 79.19% id in 548 aa, and to Escherichia coli   sodium/hydrogen exchanger SWALL:YJCE_ECOLI (SWALL:P32703) (549 aa) fasta scores: E(): 4.1e-155, 75.45% id in 546 aa
YP_048897.1	Similar to Alcaligenes eutrophus transcriptional activator protein CzcR czcR SWALL:CZCR_ALCEU (SWALL:Q44006) (225 aa) fasta scores: E(): 8.9e-30, 42.15% id in 223 aa, and to Brucella suis DNA-binding response regulator br0612 SWALL:AAN29541 (EMBL:AE014368) (235 aa) fasta scores: E(): 5.5e-33, 43.27% id in 238 aa
YP_048898.1	Similar to Pseudomonas putida sensor histidine kinase pp2906 SWALL:AAN68514 (EMBL:AE016784) (463 aa) fasta scores: E(): 2.3e-32, 30.91% id in 427 aa, and to Rhizobium loti sensory histidine protein kinase mlr4459 SWALL:Q98E08 (EMBL:AP003004) (458 aa) fasta scores: E(): 1.2e-30, 31.25% id in 464 aa
YP_048899.1	Similar to Rhizobium loti type IV prepilin peptidase, CpaA mlr5594 SWALL:Q98BF9 (EMBL:AP003007) (175 aa) fasta scores: E(): 3.7e-05, 30.53% id in 167 aa, and to Rhizobium meliloti probable CpaA2 pilus assembly protein SWALL:Q92YL6 (EMBL:AE007272) (170 aa) fasta scores: E(): 6.4e-05, 28.48% id in 172 aa
YP_048900.1	Similar to Bradyrhizobium japonicum CtpC protein SWALL:BAC45932 (EMBL:AP005937) (270 aa) fasta scores: E(): 2.7e-09, 30.96% id in 281 aa, and to Vibrio vulnificus flp pilus assembly protein CpaB vv12330 SWALL:AAO10705 (EMBL:AE016804) (279 aa) fasta scores: E(): 8.4e-09, 28.94% id in 304 aa
YP_048901.1	Similar to Actinobacillus actinomycetemcomitans rough colony protein A RcpA SWALL:Q9X6J1 (EMBL:AF139249) (460 aa) fasta scores: E(): 2.1e-15, 29.2% id in 404 aa, and to Escherichia coli protein transport protein HofQ precursor SWALL:HOFQ_ECOLI (SWALL:P34749) (412 aa) fasta scores: E(): 2.9e-10, 24.71% id in 433 aa, and to Salmonella typhi type II secretion system protein HofQ SWALL:Q8Z206 (EMBL:AL627281) (412 aa) fasta scores: E(): 7e-10, 27.27% id in 253 aa
YP_048902.1	Similar to Agrobacterium tumefaciens components of type IV pilus CtpE SWALL:Q8UIS2 (EMBL:AE008995) (250 aa) fasta scores: E(): 0.0024, 23.63% id in 220 aa, and to Rhizobium meliloti hypothetical protein r00142 r00142 or smc04110 SWALL:Q92KU4 (EMBL:AL591782) (226 aa) fasta scores: E(): 0.81, 21.62% id in 222 aa
YP_048903.1	Similar to Bradyrhizobium japonicum protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1.7e-20, 26.68% id in 371 aa, and to Caulobacter crescentus pilus assembly protein CpaE SWALL:Q9A495 (EMBL:AE005958) (517 aa) fasta scores: E(): 7.2e-16, 27.76% id in 371 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpF SWALL:Q8UIS3 (EMBL:AE008995) (462 aa) fasta scores: E(): 5.2e-13, 29.79% id in 292 aa.; Similar to Bradyrhizobium japonicum Blr3493 protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1.7e-20, 26.68% id in 371 aa
YP_048904.1	Similar to Caulobacter crescentus CpaF SWALL:Q9L714 (EMBL:AF229646) (501 aa) fasta scores: E(): 6.1e-65, 45.13% id in 452 aa, and to Bradyrhizobium japonicum component of type iv pilus blr3494 SWALL:BAC48759 (EMBL:AP005947) (458 aa) fasta scores: E(): 1.7e-74, 55.01% id in 429 aa, and to Vibrio vulnificus flp pilus assembly protein vv11755 SWALL:AAO10167 (EMBL:AE016802) (495 aa) fasta scores: E(): 6.7e-66, 44.73% id in 465 aa
YP_048905.1	Similar to Vibrio vulnificus flp pilus assembly protein tadB vv12335 SWALL:AAO10710 (EMBL:AE016804) (294 aa) fasta scores: E(): 7.9e-20, 28.38% id in 310 aa, and to Actinobacillus actinomycetemcomitans TadB SWALL:Q9XC05 (EMBL:AF152598) (295 aa) fasta scores: E(): 7.7e-14, 27.57% id in 243 aa
YP_048906.1	Similar to Vibrio vulnificus flp pilus assembly protein TadC vv12336 SWALL:AAO10711 (EMBL:AE016804) (293 aa) fasta scores: E(): 2.7e-25, 31.34% id in 319 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpI or atu0216 or agr_c_371 SWALL:Q8UIS6 (EMBL:AE008995) (328 aa) fasta scores: E(): 2.7e-24, 34.12% id in 296 aa
YP_048907.1	Similar to Bradyrhizobium japonicum Blr1433 protein blr1433 SWALL:BAC46698 (EMBL:AP005940) (271 aa) fasta scores: E(): 0.00039, 29.04% id in 272 aa, and to Rhizobium loti O-linked glcnac transferase mlr3120 SWALL:Q98GY3 (EMBL:AP003001) (280 aa) fasta scores: E(): 0.00027, 25.61% id in 246 aa
YP_048908.1	No significant database matches.
YP_048909.1	No significant database matches.
YP_048910.1	Similar to Vibrio vulnificus conserved hypothetical protein vv12340 SWALL:AAO10715 (EMBL:AE016804) (465 aa) fasta scores: E(): 0.14, 24.52% id in 424 aa, and to Salmonella typhimurium peptidase b pepb or stm2536 SWALL:PEPB_SALTY (SWALL:Q9RF52) (427 aa) fasta scores: E(): 1.8, 23.39% id in 265 aa
YP_048911.1	Similar to Bradyrhizobium japonicum Bll3563 protein bll3563 SWALL:BAC48828 (EMBL:AP005948) (3441 aa) fasta scores: E(): 8.9e-20, 22.46% id in 3387 aa, and to Brucella suis outer membrane autotransporter bra1148 SWALL:AAN34307 (EMBL:AE014607) (3420 aa) fasta scores: E(): 6.1e-08, 22.91% id in 3217 aa
YP_048912.1	Similar to Chromobacterium violaceum hypothetical protein cv0465 SWALL:Q7P0V0 (EMBL:AE016911) (527 aa) fasta scores: E(): 9.9e-65, 40.31% id in 506 aa
YP_048913.1	Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 2.3e-10, 26.29% id in 232 aa, and to Shewanella oneidensis HlyD family secretion protein so3483 SWALL:AAN56476 (EMBL:AE015784) (369 aa) fasta scores: E(): 2.4e-09, 25.49% id in 251 aa. Note that there are no significant database matches to enterobacterial species.
YP_048914.1	Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 1.9e-05, 24.12% id in 228 aa, and to Vibrio cholerae periplasmic linker protein,  vc1756 SWALL:Q9KR86 (EMBL:AE004253) (364 aa) fasta scores: E(): 4e-05, 27.53% id in 247 aa.
YP_048916.1	Similar to Erwinia chrysanthemi rhamnogalacturonase precursor RhiE SWALL:Q8RJP2 (EMBL:AJ438339) (578 aa) fasta scores: E(): 1.3e-133, 60.1% id in 554 aa. The only other significant database matches are of eukaryotic origin.
YP_048917.1	Similar to Salmonella typhi hypothetical protein sty4288 SWALL:Q8Z220 (EMBL:AL627281) (308 aa) fasta scores: E(): 3.3e-57, 51.82% id in 301 aa, and to Erwinia amylovora hypothetical 37.6 kDa protein SWALL:Q9F805 (EMBL:AF264948) (332 aa) fasta scores: E(): 2.9e-54, 48.67% id in 302 aa, and to Escherichia coli hypothetical protein YfaD SWALL:YFAD_ECOLI (SWALL:P37014) (299 aa) fasta scores: E(): 8.6e-48, 47.82% id in 299 aa.
YP_048918.1	member of the sodium:solute symporter family; cotranscribed with the acs gene which encodes acetyl coenzyme A synthase; mutations affect acetate uptake
YP_048919.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein YjcH SWALL:YJCH_ECOLI (SWALL:P32706) (104 aa) fasta scores: E(): 7.3e-27, 71.56% id in 102 aa, and to Salmonella typhi  membrane protein sty4472 SWALL:Q8Z1R1 (EMBL:AL627282) (104 aa) fasta scores: E(): 1.7e-25, 70.58% id in 102 aa
YP_048920.1	Similar to Pectobacterium carotovorum subsp. atrosepticum global regulatory protein HexY SWALL:Q9RB06 (EMBL:AF182073) (130 aa) fasta scores: E(): 8.2e-49, 99.23% id in 130 aa, and to Pectobacterium carotovorum subsp. carotovorum global regulatory protein HexY or RsmC SWALL:Q9R2P5 (EMBL:AF182072) (130 aa) fasta scores: E(): 9.6e-49, 99.23% id in 130 aa. No other significant database matches.
YP_048922.1	Similar to Vibrio cholerae ferrichrome outer membrane receptor FhuA fhuA SWALL:Q9RF13 (EMBL:AF203702) (700 aa) fasta scores: E(): 2.8e-96, 40.61% id in 687 aa, and to Bradyrhizobium japonicum FegA SWALL:P70921 (EMBL:U61401) (750 aa) fasta scores: E(): 1.5e-78, 35.22% id in 738 aa
YP_048923.1	Similar to Bordetella avium RhuI SWALL:Q8L1U9 (EMBL:AY095952) (168 aa) fasta scores: E(): 5.1e-26, 45% id in 160 aa, and to Escherichia coli probable RNA polymerase sigma factor feci feci or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 2.1e-22, 43.94% id in 157 aa
YP_048924.1	Similar to Escherichia coli protein FecR SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 4.1e-27, 33.01% id in 315 aa, and to Pseudomonas putida PupR protein SWALL:Q52209 (EMBL:X77918) (324 aa) fasta scores: E(): 3.3e-23, 29.9% id in 321 aa, and to Bordetella avium RhuR SWALL:Q8L1U8 (EMBL:AY095952) (307 aa) fasta scores: E(): 3.3e-17, 27.12% id in 317 aa
YP_048925.1	Similar to Pseudomonas putida membrane protein, pp4850 SWALL:AAN70419 (EMBL:AE016792) (355 aa) fasta scores: E(): 6.8e-61, 51.66% id in 331 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0411 SWALL:Q8XSQ6 (EMBL:AL646078) (341 aa) fasta scores: E(): 3.4e-43, 42.07% id in 328 aa
YP_048926.1	Similar to Clostridium acetobutylicum predicted membrane protein, hemolysin iii homolog cac0947 SWALL:Q97KH2 (EMBL:AE007610) (211 aa) fasta scores: E(): 0.68, 25.25% id in 194 aa
YP_048927.1	Similar to Erwinia chrysanthemi oligogalacturonide transporter TogT SWALL:Q93KC2 (EMBL:AJ305143) (508 aa) fasta scores: E(): 5.8e-176, 84.81% id in 507 aa. Also similar to ECA3560 (40.426% id. in 517 aa overlap)
YP_048928.1	No significant database matches.
YP_048929.1	Similar to Escherichia coli D-mannonate oxidoreductase UxuB or b4323 SWALL:UXUB_ECOLI (SWALL:P39160) (486 aa) fasta scores: E(): 4.5e-107, 56.03% id in 489 aa, and to Yersinia pestis  D-mannonate oxidoreductase ypo1280 or y2903 SWALL:AAM86454 (EMBL:AJ414147) (490 aa) fasta scores: E(): 8.7e-128, 63.93% id in 488 aa. Also similar to ECA0920 (54.906% id. in 479 aa overlap)
YP_048930.1	Similar to Emericella nidulans O-acetyl-L-homoserine sulfhydrylase CysD SWALL:O13387 (EMBL:AF029318) (437 aa) fasta scores: E(): 2.6e-79, 52.47% id in 425 aa, and to Shewanella oneidensis O-acetylhomoserine so1095 SWALL:AAN54166 (EMBL:AE015554) (430 aa) fasta scores: E(): 3.2e-138, 85.21% id in 426 aa
YP_048931.1	Similar to Salmonella typhimurium, and Salmonella typhi  periplasmic protein YbiS or SWALL:Q8XFD8 (EMBL:AE008734) (306 aa) fasta scores: E(): 1.9e-74, 67.64% id in 306 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YbiS precursor SWALL:YBIS_ECOLI (SWALL:P75789) (306 aa) fasta scores: E(): 2.8e-74, 67.64% id in 306 aa
YP_048932.1	Similar to Escherichia coli O157:H7 hypothetical protein ybeM SWALL:YBEM_ECO57 (SWALL:P58054) (262 aa) fasta scores: E(): 4.7e-55, 53.25% id in 261 aa
YP_048933.1	Similar to Escherichia coli, and Shigella flexneri cytochrome B561 CybB or b1418 or sf1794 SWALL:C561_ECOLI (SWALL:P08732) (176 aa) fasta scores: E(): 2.1e-34, 49.71% id in 177 aa
YP_048934.1	Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap)
YP_048935.1	No significant database matches.
YP_048936.1	Similar to Pseudomonas aeruginosa probable N-acetyltransferase pa0478 SWALL:Q9I640 (EMBL:AE004485) (158 aa) fasta scores: E(): 1.4e-37, 64.13% id in 145 aa, and to Rhizobium meliloti  acetyltransferase protein r00799 SWALL:Q92RQ9 (EMBL:AL591785) (159 aa) fasta scores: E(): 3.2e-34, 57.14% id in 154 aa. Note that there are no significant database matches to enterobacterial species.
YP_048937.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri homoserine/homoserine lactone efflux protein RhtB or b3824 or c4746 or z5345 or ecs4754 or sf3902 SWALL:RHTB_ECOLI (SWALL:P27847) (206 aa) fasta scores: E(): 3.9e-19, 34.45% id in 209 aa, and to Shewanella oneidensis transporter, LysE family so0122 SWALL:AAN53209 (EMBL:AE015463) (207 aa) fasta scores: E(): 1.9e-30, 47.8% id in 205 aa. Also similar to ECA4170 (RhtB) (36.019% id. in 211 aa overlap)
YP_048938.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 8.9e-35, 38.22% id in 259 aa, and to Pseudomonas aeruginosa periplasmic histidine-binding protein HisJ or pa2923 SWALL:Q9HZS4 (EMBL:AE004718) (261 aa) fasta scores: E(): 2.8e-35, 40.15% id in 259 aa
YP_048939.1	No significant database matches.
YP_048941.1	Partial CDS. Similar to the C-terminal region of Escherichia coli transposase insg for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa, and to Insertion sequence IS4 hypothetical 50.4 kDa protein SWALL:AAA61828 (EMBL:M10575) (442 aa) fasta scores: E(): 1.7e-12, 50% id in 94 aa
YP_048942.1	Partial CDS. Similar to Salmonella typhi  phage capsid protein sty4827 SWALL:Q8Z106 (EMBL:AL627283) (286 aa) fasta scores: E(): 0.0011, 35.41% id in 96 aa. No other significant database matches.
YP_048943.1	Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 1.9e-08, 48.98% id in 49 aa, and to Erwinia amylovora levansucrase regulator RlsB SWALL:Q8VNT8 (EMBL:AJ344351) (61 aa) fasta scores: E(): 2.2e-13, 64.7% id in 51 aa, and to Escherichia coli prophage P2 Ogr protein OgrK or b2082 SWALL:OGRK_ECOLI (SWALL:P37057) (72 aa) fasta scores: E(): 4.7e-08, 53.06% id in 49 aa. Also similar to ECA0414 (41.818% id. in 55 aa overlap), and to ECA3454 (46.000% id. in 50 aa overlap), and to ECA2599 (39.216% id. in 51 aa overlap).
YP_048944.1	Similar to Pseudomonas syringae hypothetical protein pspto4607 SWALL:Q87WE4 (EMBL:AE016872) (819 aa) fasta scores: E(): 1.1e-96, 37.91% id in 807 aa
YP_048945.1	Similar to Escherichia coli prophage cp4-57 integrase IntA SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 5.3e-93, 57.76% id in 393 aa, and to Yersinia pestis prophage cp4-57 integrase IntA SWALL:AAM86631 (EMBL:AE013909) (410 aa) fasta scores: E(): 5.3e-145, 92.17% id in 396 aa.
YP_048946.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_048947.1	Similar to Yersinia pestis hypothetical protein ypo1102 SWALL:Q8ZH13 (EMBL:AJ414146) (144 aa) fasta scores: E(): 2.3e-47, 86.01% id in 143 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein YfjG SWALL:AAN44173 (EMBL:D12501) (158 aa) fasta scores: E(): 3.3e-42, 76.55% id in 145 aa
YP_048948.2	Similar to Escherichia coli O6 protein YfjF SWALL:AAN81590 (EMBL:AE016764) (102 aa) fasta scores: E(): 1.8e-23, 75% id in 92 aa, and to Escherichia coli protein YfjF SWALL:YFJF_ECOLI (SWALL:P52119) (96 aa) fasta scores: E(): 4.4e-23, 75% id in 92 aa.
YP_048949.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri small protein A precursor SmpA or b2617 or c3139 or sf2676 SWALL:SMPA_ECOLI (SWALL:P23089) (113 aa) fasta scores: E(): 1.3e-33, 80% id in 110 aa
YP_048950.1	Similar to Escherichia coli DNA repair protein RecN or RadB or b2616 SWALL:RECN_ECOLI (SWALL:P05824) (553 aa) fasta scores: E(): 2.6e-138, 73.41% id in 553 aa
YP_048951.1	catalyzes the phosphorylation of NAD to NADP
YP_048952.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_048953.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 manganese transport protein MntH or b2392 or c2931 or z3658 or ecs3271 SWALL:MNTH_ECOLI (SWALL:P77145) (412 aa) fasta scores: E(): 4.7e-123, 81.08% id in 407 aa.
YP_048954.1	Similar to Yersinia pestis  tautomerase ypo3989 SWALL:Q8ZA31 (EMBL:AJ414160) (66 aa) fasta scores: E(): 2.5e-18, 81.81% id in 66 aa, and to Erwinia chrysanthemi hypothetical 8.1 kDa protein in kdgk 5'region SWALL:YKDK_ERWCH (SWALL:P45418) (73 aa) fasta scores: E(): 3.9e-17, 78.12% id in 64 aa
YP_048955.1	Similar to Xylella fastidiosa hypothetical protein xf0268 SWALL:Q9PGN0 (EMBL:AE003880) (395 aa) fasta scores: E(): 2.5e-82, 61.69% id in 355 aa, and to Salmonella typhi membrane protein sty4872 SWALL:Q8Z0X3 (EMBL:AL627284) (394 aa) fasta scores: E(): 3.4e-79, 62.78% id in 352 aa, and to Escherichia coli hypothetical protein YjiJ SWALL:YJIJ_ECOLI (SWALL:P39381) (392 aa) fasta scores: E(): 3.8e-75, 58.23% id in 352 aa.
YP_048956.1	forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone
YP_048957.1	Similar to Yersinia pestis hypothetical protein Ypo3035 SWALL:Q8ZCF6 (EMBL:AJ414155) (198 aa) fasta scores: E(): 6.2e-48, 69.14% id in 188 aa, and to Escherichia coli hypothetical protein YffH SWALL:YFFH_ECOLI (SWALL:P37128) (191 aa) fasta scores: E(): 1.1e-46, 64.48% id in 183 aa
YP_048958.1	Similar to Agrobacterium radiobacter lactose-binding protein precursor lacE SWALL:LACE_AGRRD (SWALL:P29822) (422 aa) fasta scores: E(): 6e-79, 49.4% id in 417 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter periplasmic solute-binding protein lace or rb0001 or smb21652 SWALL:Q926I0 (EMBL:AL603642) (424 aa) fasta scores: E(): 1.1e-82, 50.97% id in 410 aa
YP_048959.1	Similar to Agrobacterium radiobacter lactose transport system permease protein LacF SWALL:LACF_AGRRD (SWALL:P29823) (298 aa) fasta scores: E(): 1.2e-73, 62.54% id in 291 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter permease protein LacF or rb0002 or smb21653 SWALL:Q92XF9 (EMBL:AL603642) (298 aa) fasta scores: E(): 2.1e-74, 65.27% id in 288 aa
YP_048960.1	Similar to Agrobacterium radiobacter lactose transport system permease protein LacG SWALL:LACG_AGRRD (SWALL:P29824) (273 aa) fasta scores: E(): 6.5e-66, 57.46% id in 268 aa, and to Bacillus subtilis L-arabinose transport system permease protein AraQ SWALL:ARAQ_BACSU (SWALL:P94530) (281 aa) fasta scores: E(): 1e-30, 33.94% id in 271 aa
YP_048961.1	Similar to Agrobacterium radiobacter lactose transport ATP-binding protein LacK SWALL:LACK_AGRRD (SWALL:Q01937) (363 aa) fasta scores: E(): 5.5e-66, 56.16% id in 365 aa, and to Yersinia pestis  transport ATP-binding protein y3242 SWALL:AAM86792 (EMBL:AE013925) (368 aa) fasta scores: E(): 1.1e-77, 60.94% id in 361 aa
YP_048962.1	Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor gala or ganA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 1.2e-16, 33.53% id in 325 aa, and to Thermotoga maritima arabinogalactan endo-1,4-beta-galactosidase, tm1201 SWALL:Q9X0S8 (EMBL:AE001777) (606 aa) fasta scores: E(): 1.6e-33, 36.2% id in 348 aa, and to Aspergillus aculeatus arabinogalactan endo-1,4-beta-galactosidase precursor gal1 SWALL:GANA_ASPAC (SWALL:P48842) (350 aa) fasta scores: E(): 2.2e-15, 30.69% id in 329 aa
YP_048963.1	Similar to Escherichia coli ebg operon repressor EbgR or b3075 SWALL:EBGR_ECOLI (SWALL:P06846) (327 aa) fasta scores: E(): 3.5e-19, 32.71% id in 321 aa, and to Streptococcus thermophilus galactose operon repressor GalR SWALL:GALR_STRTR (SWALL:Q9ZB11) (331 aa) fasta scores: E(): 1.3e-12, 31.42% id in 350 aa
YP_048964.1	Similar to Rhizobium sp. TAL1145 mimosine transporter ATP-binding protein MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 2.7e-49, 57.55% id in 245 aa, and to Corynebacterium glutamicum ABC-type transporter, ATPase component cgl1330 SWALL:Q8NQU4 (EMBL:AP005278) (250 aa) fasta scores: E(): 1.9e-50, 59.57% id in 235 aa
YP_048965.1	Similar to Rhizobium sp. TAL1145 mimosine transporter permease MidB SWALL:Q9EYT1 (EMBL:AF312768) (234 aa) fasta scores: E(): 6.8e-38, 52.52% id in 198 aa, and to Rhizobium meliloti  ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 1.8e-46, 46.2% id in 290 aa
YP_048966.1	Similar to Rhizobium sp. TAL1145 mimosine-binding periplasmic protein MidA SWALL:Q9EYT2 (EMBL:AF312768) (281 aa) fasta scores: E(): 1.8e-11, 28.07% id in 260 aa, and to Bifidobacterium longum probable solute binding protein of ABC transporter system bl1179 SWALL:AAN24984 (EMBL:AE014742) (354 aa) fasta scores: E(): 5.8e-23, 33.8% id in 281 aa
YP_048967.1	Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 2.1e-35, 39.05% id in 274 aa, and to Bacillus subtilis transcription antiterminator LicT or n15A SWALL:LICT_BACSU (SWALL:P39805) (277 aa) fasta scores: E(): 4.1e-37, 38.98% id in 277 aa. Also similar to ECA1452 (37.500% id. in 250 aa overlap), and to ECA4389 (36.861% id. in 274 aa overlap), and to ECA1869, ArbG, (38.000% id. in 272 aa overlap)
YP_048968.1	Similar to Caldocellum saccharolyticum beta-glucosidase A bglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 3.1e-50, 38.13% id in 472 aa, and to Clostridium acetobutylicum beta_glucosidase cap0010 SWALL:Q97TT6 (EMBL:AE001438) (469 aa) fasta scores: E(): 7.2e-116, 57.96% id in 471 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.5e-53, 39.42% id in 487 aa
YP_048969.1	Similar to Bacillus subtilis PTS system, beta-glucoside-specific IIabc component BglP or N17C SWALL:PTBA_BACSU (SWALL:P40739) (609 aa) fasta scores: E(): 1.1e-61, 39.06% id in 640 aa, and to Escherichia coli PTS system, arbutin-, cellobiose-, and salicin-specific IIabc component ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 6.6e-58, 38.55% id in 472 aa
YP_048970.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_048971.1	Maintains the balance of metabolites in the pentose-phosphate pathway
YP_048972.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_048973.1	No significant database matches.
YP_048974.1	Similar to Streptomyces coelicolor  transporter protein sco0581 SWALL:Q9RJQ9 (EMBL:AL939106) (455 aa) fasta scores: E(): 2.9e-116, 68.09% id in 442 aa, and to Yersinia pestis  integral membrane protein ypo2237 SWALL:Q8ZED7 (EMBL:AJ414151) (436 aa) fasta scores: E(): 3.1e-61, 39.77% id in 435 aa
YP_048975.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_048976.1	Similar to Lactobacillus delbrueckii triosephosphate isomerase TpiA or Tpi SWALL:TPIS_LACDE (SWALL:O32757) (252 aa) fasta scores: E(): 3.7e-20, 33.33% id in 255 aa, and to Streptomyces coelicolor triosephosphate isomerase sco0578 or scf55.02C SWALL:Q9RJR2 (EMBL:AL939106) (259 aa) fasta scores: E(): 1.1e-46, 55.46% id in 247 aa
YP_048977.1	Similar to Streptomyces coelicolor conserved hypothetical protein sco0577 SWALL:CAD55267 (EMBL:AL939106) (266 aa) fasta scores: E(): 2.9e-59, 56.87% id in 262 aa, and to Rhizobium meliloti hypothetical protein r01695 SWALL:Q92PP1 (EMBL:AL591788) (274 aa) fasta scores: E(): 1.9e-21, 29.68% id in 256 aa. Note that there are no significant database matches to enterobacterial species.
YP_048978.1	Similar to Streptomyces coelicolor  oxidoreductase sco0576 or sc5g5.08C SWALL:Q93RZ4 (EMBL:AL939106) (291 aa) fasta scores: E(): 3e-65, 59.85% id in 284 aa, and to Rhizobium meliloti hypothetical protein rb0334 rb0334 or smb20348 SWALL:Q92WK5 (EMBL:AL603643) (275 aa) fasta scores: E(): 3.8e-35, 39.17% id in 268 aa. Note that there are no significant database matches to enterobacterial species.
YP_048979.1	Similar to Yersinia pestis  transcriptional regulator y0843 SWALL:AAM84428 (EMBL:AE013687) (332 aa) fasta scores: E(): 8e-99, 83.12% id in 320 aa, and to Klebsiella pneumoniae sorbitol operon regulator SorC SWALL:SORC_KLEPN (SWALL:P37078) (315 aa) fasta scores: E(): 6.1e-16, 30.03% id in 313 aa.
YP_048980.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_048981.1	tryptophan transporter of high affinity
YP_048982.1	Similar to Yersinia pestis hypothetical protein ypo3033 SWALL:YU33_YERPE (SWALL:Q8ZCF8) (152 aa) fasta scores: E(): 1.4e-47, 88.51% id in 148 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YaiI SWALL:YAII_ECOLI (SWALL:P52088) (152 aa) fasta scores: E(): 1.2e-42, 78% id in 150 aa
YP_048983.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_048984.1	Similar to Yersinia pestis  acetyltransferase ypo3031 SWALL:Q8ZCG0 (EMBL:AJ414155) (141 aa) fasta scores: E(): 1.5e-48, 87.94% id in 141 aa, and to Salmonella typhi  acetyltransferase sty2686 SWALL:Q8Z4V0 (EMBL:AL627274) (141 aa) fasta scores: E(): 1.1e-46, 82.27% id in 141 aa.
YP_048985.1	Similar to Escherichia coli ferric aerobactin receptor precursor IutA SWALL:IUTA_ECOLI (SWALL:P14542) (732 aa) fasta scores: E(): 0, 75.85% id in 733 aa, and to Shigella boydii IutA SWALL:Q93PE2 (EMBL:AF335540) (732 aa) fasta scores: E(): 0, 75.44% id in 733 aa
YP_048986.1	Similar to Erwinia chrysanthemi TonB protein TonB SWALL:Q9REB0 (EMBL:Y15888) (252 aa) fasta scores: E(): 8.6e-09, 30.12% id in 239 aa, and to Escherichia coli TonB protein TonB or ExbA or b1252 SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 4.7e-08, 33.21% id in 271 aa
YP_048987.1	Similar to Escherichia coli hypothetical protein yddb or b1495 SWALL:YDDB_ECOLI (SWALL:P31827) (790 aa) fasta scores: E(): 6.7e-27, 28.16% id in 813 aa, and to Haemophilus influenzae hypothetical protein Hi1369 SWALL:YDDB_HAEIN (SWALL:P45182) (839 aa) fasta scores: E(): 6.1e-19, 24.43% id in 843 aa
YP_048988.1	Similar to Escherichia coli probable zinc protease PqqL or b1494 SWALL:PQQL_ECOLI (SWALL:P31828) (931 aa) fasta scores: E(): 1.1e-43, 25.42% id in 948 aa, and to Pasteurella multocida PqqL or pm0804 SWALL:Q9CML5 (EMBL:AE006119) (923 aa) fasta scores: E(): 1.9e-47, 23.52% id in 948 aa
YP_048989.1	Similar to Pasteurella multocida hypothetical protein Pm0041 SWALL:Q9CPJ6 (EMBL:AE006038) (564 aa) fasta scores: E(): 7.9e-99, 48.01% id in 554 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein YddA SWALL:YDDA_ECOLI (SWALL:P31826) (561 aa) fasta scores: E(): 5.7e-71, 38.24% id in 536 aa
YP_048990.1	Similar to Yersinia pestis  lipoprotein ypo3026 SWALL:Q8ZCG5 (EMBL:AJ414155) (203 aa) fasta scores: E(): 3.1e-41, 57.92% id in 202 aa, and to Salmonella typhi lipoprotein sty2684 SWALL:Q8Z4V2 (EMBL:AL627274) (191 aa) fasta scores: E(): 3.8e-38, 56.31% id in 190 aa
YP_048991.1	Similar to Yersinia pestis hypothetical protein ypo3025 SWALL:Q8ZCG6 (EMBL:AJ414155) (299 aa) fasta scores: E(): 1.3e-91, 75.25% id in 299 aa, and to Escherichia coli hypothetical protein YfeX SWALL:YFEX_ECOLI (SWALL:P76536) (299 aa) fasta scores: E(): 3.6e-79, 67.33% id in 300 aa.
YP_048992.1	Similar to Escherichia coli thiosulfate-binding protein precursor CysP or b2425 SWALL:CYSP_ECOLI (SWALL:P16700) (338 aa) fasta scores: E(): 1e-102, 79.34% id in 334 aa
YP_048993.1	Similar to Escherichia coli sulfate transport system permease protein CysT SWALL:CYST_ECOLI (SWALL:P16701) (277 aa) fasta scores: E(): 2.9e-86, 80.95% id in 273 aa
YP_048994.1	Part of the ABC transporter complex cysAWTP involved in sulfate/thiosulfate import
YP_048995.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_048996.1	Similar to Escherichia coli macrolide-specific ABC-type efflux carrier MacB or b0879 SWALL:MACB_ECOLI (SWALL:P75831) (648 aa) fasta scores: E(): 7.4e-124, 55.71% id in 648 aa
YP_048997.1	Similar to Escherichia coli macrolide-specific efflux protein MacA precursor MacA or b0878 SWALL:MACA_ECOLI (SWALL:P75830) (371 aa) fasta scores: E(): 8.9e-30, 37.17% id in 390 aa, and to Yersinia pestis HlyD family secretion protein ypo2999 or y1481 SWALL:AAM85052 (EMBL:AJ414154) (401 aa) fasta scores: E(): 3.8e-78, 64.69% id in 405 aa
YP_048998.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein CpxR or b3912 or z5457 or ecs4838 or sf3991 SWALL:CPXR_ECOLI (SWALL:P16244) (232 aa) fasta scores: E(): 3.5e-31, 44.93% id in 227 aa, and to Yersinia pestis two-component system response regulator ypo2998 or cpxr or y1482 SWALL:Q8ZCI9 (EMBL:AJ414154) (227 aa) fasta scores: E(): 1.3e-67, 77.97% id in 227 aa
YP_048999.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 sensor protein CpxA or EcfB or Ssd or Eup or b3911 or c4863 or z5456 or ecs4837 SWALL:CPXA_ECOLI (SWALL:P08336) (457 aa) fasta scores: E(): 2.2e-23, 29.53% id in 474 aa, and to Yersinia pestis two-component system sensor kinase ypo2997 or y1483 SWALL:Q8ZCJ0 (EMBL:AJ414154) (449 aa) fasta scores: E(): 1e-91, 56.86% id in 459 aa
YP_049000.1	functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose
YP_049001.1	Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system
YP_049002.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri phosphocarrier protein Hpr or b2415 or c2950 or z3681 or ecs3287 or stm2431 or sty2667 or t0426 or sf2470 SWALL:PTHP_ECOLI (SWALL:P07006) (85 aa) fasta scores: E(): 1e-27, 97.64% id in 85 aa
YP_049003.1	CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis
YP_049004.1	role in sulfur assimilation
YP_049005.1	interacts with cell division protein FitsZ and may be required to anchor septal ring structure
YP_049006.1	uncharacterized member of the APC superfamily of amino acid transporters; unknown function
YP_049007.1	Similar to Salmonella typhimurium  cytoplasmic protein stm3196 SWALL:Q8ZLY9 (EMBL:AE008847) (119 aa) fasta scores: E(): 1.4e-20, 75.75% id in 99 aa, and to Escherichia coli hypothetical protein yqiC SWALL:YQIC_ECOLI (SWALL:Q46868) (116 aa) fasta scores: E(): 2e-19, 77.66% id in 94 aa
YP_049008.1	DHBP synthase; functions during riboflavin biosynthesis
YP_049009.1	with TehA confers resistance to tellurite
YP_049010.1	catalyzes the reduction of the rubredoxin moiety of nitric oxide reductase
YP_049011.1	detoxifies nitric oxide using NADH
YP_049012.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_049013.1	Similar to Escherichia coli, and Escherichia coli O6 fumarate hydratase class I, aerobic FumA or b1612 or c2004 SWALL:FUMA_ECOLI (SWALL:P00923) (547 aa) fasta scores: E(): 3.1e-189, 85.13% id in 545 aa
YP_049014.1	Similar to Yersinia pestis  LysR-family transcriptional regulatory protein ypo2979 SWALL:Q8ZCK5 (EMBL:AJ414154) (292 aa) fasta scores: E(): 1.7e-70, 64.08% id in 284 aa, and to Salmonella typhi possible regulatory protein sty3165 SWALL:Q8Z3Z7 (EMBL:AL627277) (287 aa) fasta scores: E(): 3.8e-56, 55.35% id in 280 aa.
YP_049015.1	Similar to Yersinia pestis  membrane protein ypo2978 SWALL:AAM85075 (EMBL:AJ414154) (175 aa) fasta scores: E(): 3.9e-37, 60.66% id in 150 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein stm3021 or sty3166 SWALL:Q8XG43 (EMBL:AE008839) (160 aa) fasta scores: E(): 2.2e-33, 60% id in 145 aa.
YP_049016.1	Similar to Schizosaccharomyces pombe DNA-3-methyladenine glycosylase 1 Mag1 or spapb24d3.04C SWALL:MAG1_SCHPO (SWALL:Q92383) (228 aa) fasta scores: E(): 3.5e-33, 43.75% id in 208 aa, and to Pseudomonas putida DNA-3-methyladenine glycosylase pp0705 SWALL:AAN66330 (EMBL:AE016776) (208 aa) fasta scores: E(): 1.7e-39, 51.98% id in 202 aa
YP_049017.1	Similar to Escherichia coli Ada regulatory protein SWALL:ADA_ECOLI (SWALL:P06134) (354 aa) fasta scores: E(): 2.3e-70, 53.95% id in 341 aa
YP_049018.1	Similar to Escherichia coli alkylated DNA repair protein AlkB or AidD or b2212 SWALL:ALKB_ECOLI (SWALL:P05050) (216 aa) fasta scores: E(): 6e-49, 56.94% id in 216 aa
YP_049019.1	Similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 1e-20, 27.82% id in 496 aa, and to Shewanella oneidensis fumarate reductase flavoprotein subunit precursor so0970 SWALL:FRDA_SHEON (SWALL:P83223) (596 aa) fasta scores: E(): 1.7e-17, 29.27% id in 485 aa, and to Rhodococcus erythropolis 3-ketosteroid 1-dehydrogenase KstD2 SWALL:Q8RLT5 (EMBL:AY078169) (565 aa) fasta scores: E(): 5e-10, 28.73% id in 341 aa
YP_049020.1	Similar to Fusobacterium nucleatum hypothetical protein Fn0656 SWALL:Q8RFN5 (EMBL:AE010576) (126 aa) fasta scores: E(): 0.065, 32.14% id in 112 aa, and to Methanosarcina acetivorans na+-transporting NADH:ubiquinone oxidoreductase, subunit 3 Nqr3 or ma0661 SWALL:Q8TSY2 (EMBL:AE010727) (188 aa) fasta scores: E(): 5.6, 31.64% id in 79 aa
YP_049021.1	Similar to Yersinia pestis  membrane transport protein ypo0009 SWALL:Q8ZJS7 (EMBL:AJ414141) (474 aa) fasta scores: E(): 7.2e-49, 33.76% id in 459 aa, and to Escherichia coli hypothetical transport protein YieO SWALL:YIEO_ECOLI (SWALL:P31474) (475 aa) fasta scores: E(): 6.1e-48, 32.59% id in 451 aa.
YP_049022.1	Similar to Escherichia coli NfrD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 1.4e-56, 50.62% id in 322 aa. Also similar to ECA1878 (50.784% id. in 319 aa overlap)
YP_049023.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor nrfc or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 7.3e-49, 58.66% id in 225 aa. Also similar to ECA1877 (56.444% id. in 225 aa overlap)
YP_049024.1	Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36115 (EMBL:AY057845) (361 aa) fasta scores: E(): 2.7e-40, 41.21% id in 313 aa, and to Rhodococcus sp heroin esterase Her SWALL:O06441 (EMBL:U70619) (322 aa) fasta scores: E(): 1.1e-07, 36.92% id in 130 aa, and to Pyrobaculum calidifontis esterase pc-Est SWALL:Q8NKS0 (EMBL:AB078331) (313 aa) fasta scores: E(): 1.2e-07, 26.64% id in 274 aa, and to Acetobacter pasteurianus arylesterase Est1 SWALL:O66374 (EMBL:AB012140) (317 aa) fasta scores: E(): 5.9e-06, 26.96% id in 293 aa
YP_049025.1	Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa
YP_049026.1	Similar to Escherichia coli starvation sensing protein RspA SWALL:RSPA_ECOLI (SWALL:P38104) (404 aa) fasta scores: E(): 5.7e-163, 92.57% id in 404 aa. Also similar to ECA0189 (36.070% id. in 402 aa overlap)
YP_049027.1	Similar to Escherichia coli starvation sensing protein RspB or b1580 SWALL:RSPB_ECOLI (SWALL:P38105) (339 aa) fasta scores: E(): 5.6e-94, 73.45% id in 339 aa
YP_049028.1	Similar to Salmonella typhi  membrane transport protein sty1554 SWALL:Q8Z6Z5 (EMBL:AL627270) (459 aa) fasta scores: E(): 4e-141, 81.69% id in 448 aa, and to Escherichia coli hypothetical metabolite transport protein YdfJ SWALL:YDFJ_ECOLI (SWALL:P77228) (427 aa) fasta scores: E(): 1.1e-67, 80.09% id in 422 aa
YP_049029.1	Similar to Escherichia coli D-mannonate oxidoreductase UxuB or b4323 SWALL:UXUB_ECOLI (SWALL:P39160) (486 aa) fasta scores: E(): 1.5e-102, 54.83% id in 476 aa, and to Escherichia coli hypothetical oxidoreductase ydfi or b1542 SWALL:YDFI_ECOLI (SWALL:P77260) (486 aa) fasta scores: E(): 1.2e-127, 65.26% id in 475 aa. Also similar to ECA0819 (UxuB) (54.906% id. in 479 aa overlap)
YP_049030.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical transcriptional regulator YdfH SWALL:YDFH_ECOLI (SWALL:P77577) (228 aa) fasta scores: E(): 2e-51, 60.88% id in 225 aa, and to Salmonella typhimurium, and Salmonella typhi  regulatory protein, GntR-family stm1510 or sty1551 SWALL:Q8XFZ6 (EMBL:AE008766) (228 aa) fasta scores: E(): 2.3e-50, 60% id in 225 aa
YP_049031.1	Similar to Pseudomonas syringae transcriptional regulator, LusR family pspto1618 SWALL:Q886G1 (EMBL:AE016861) (302 aa) fasta scores: E(): 2e-62, 53.53% id in 297 aa, and to Yersinia pestis  transcriptional regulator mlr2579 SWALL:Q93AB4 (EMBL:AF426171) (303 aa) fasta scores: E(): 3.7e-44, 44.33% id in 300 aa
YP_049032.1	Similar to Synechocystis sp. hypothetical protein slr0317 SWALL:Q55924 (EMBL:D64005) (287 aa) fasta scores: E(): 3.1e-18, 31.95% id in 291 aa, and to Rhizobium loti hypothetical protein mll1871 SWALL:Q98JM9 (EMBL:AP002998) (293 aa) fasta scores: E(): 2.1e-17, 29.49% id in 295 aa, and to Escherichia coli hypothetical protein YtfG SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 1.9e-12, 29.23% id in 236 aa.
YP_049033.1	Similar to Shigella flexneri 2a hypothetical 49.1 kDa protein SWALL:Q93F16 (EMBL:AF326777) (452 aa) fasta scores: E(): 1e-107, 62.25% id in 453 aa.
YP_049034.1	Similar to Mus musculus schwannoma-associated protein pld3 or sam9 SWALL:O35405 (EMBL:AF026124) (488 aa) fasta scores: E(): 6e-08, 29.31% id in 382 aa, and to Dictyostelium discoideum hypothetical protein SWALL:Q23849 (EMBL:M19469) (372 aa) fasta scores: E(): 5.7e-12, 28.72% id in 376 aa, and to Cowpox virus v043 SWALL:Q8QN20 (EMBL:AF482758) (424 aa) fasta scores: E(): 4e-08, 27.79% id in 367 aa
YP_049035.1	Similar to Plesiomonas shigelloides ExbB SWALL:Q93SS5 (EMBL:AY008342) (269 aa) fasta scores: E(): 5.9e-08, 40.49% id in 121 aa, and to Vibrio vulnificus biopolymer transport protein vv21613 SWALL:AAO08472 (EMBL:AE016813) (230 aa) fasta scores: E(): 9.2e-07, 27.75% id in 209 aa
YP_049036.1	Similar to Escherichia coli probable TonB-dependent receptor yncd precursor yncd or b1451 SWALL:YNCD_ECOLI (SWALL:P76115) (700 aa) fasta scores: E(): 9e-12, 22.77% id in 751 aa, and to Caulobacter crescentus TonB-dependent receptor cc3436 SWALL:Q9A2X0 (EMBL:AE006003) (800 aa) fasta scores: E(): 4.1e-16, 25.64% id in 772 aa
YP_049037.1	Similar to Salmonella typhimurium TonB protein SWALL:TONB_SALTY (SWALL:P25945) (242 aa) fasta scores: E(): 6.8e-09, 35.93% id in 192 aa, and to Escherichia coli TonB protein SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 6.5e-07, 37.91% id in 182 aa.
YP_049038.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri biopolymer transport ExbD protein or b3005 or c3740 or z4358 or ecs3889 or sf3050 SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 6.4e-07, 29.85% id in 134 aa, and to Anabaena sp. hypothetical protein All5046 all5046 SWALL:Q8YM90 (EMBL:AP003598) (134 aa) fasta scores: E(): 1.2e-08, 33.58% id in 134 aa
YP_049039.1	Similar to Salmonella typhimurium  permease stm0382 SWALL:Q8ZRF1 (EMBL:AE008713) (403 aa) fasta scores: E(): 4.6e-107, 71.89% id in 395 aa, and to Escherichia coli hypothetical transport protein ycee ycee or b1053 SWALL:YCEE_ECOLI (SWALL:P25744) (408 aa) fasta scores: E(): 2.2e-89, 60.61% id in 391 aa
YP_049040.1	Similar to Xanthomonas campestris xanthomonas compestris avirulence protein precursor SWALL:Q56794 (EMBL:M99059) (617 aa) fasta scores: E(): 3.9e-141, 57.42% id in 613 aa, and to Pectobacterium carotovorum subsp. atrosepticum  avirulence protein AvrxcA SWALL:Q9RB04 (EMBL:AJ274642) (97 aa) fasta scores: E(): 1.4e-29, 100% id in 90 aa
YP_049041.1	Similar to Escherichia coli, and Escherichia coli O6 cytosine permease CodB or b0336 or c0455 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 5.8e-25, 28.73% id in 428 aa, and to Streptomyces coelicolor  cytosine permease sco0572 or sc5g5.04C SWALL:Q93RZ8 (EMBL:AL939106) (466 aa) fasta scores: E(): 2.4e-55, 40.19% id in 413 aa
YP_049042.1	Similar to Photorhabdus luminescens Orf66 SWALL:AAO17220 (EMBL:AF346500) (227 aa) fasta scores: E(): 8.7e-29, 36.01% id in 211 aa, and to Vibrio cholerae transcriptional regulator, LuxR family vca1078 SWALL:Q9KKM5 (EMBL:AE004433) (319 aa) fasta scores: E(): 1.7e-06, 26.63% id in 214 aa
YP_049043.1	Similar to Erwinia amylovora orf 12 SWALL:Q46650 (EMBL:L25828) (139 aa) fasta scores: E(): 5.3e-17, 43.7% id in 135 aa, and to Enterobacter aerogenes acetyltransferase Act SWALL:CAD48860 (EMBL:AJ508047) (138 aa) fasta scores: E(): 9.8e-17, 41.91% id in 136 aa, and to Salmonella typhimurium  acetyltransferase stm1857 SWALL:Q8ZNY6 (EMBL:AE008782) (139 aa) fasta scores: E(): 4.4e-13, 40.28% id in 139 aa
YP_049044.1	Similar to Escherichia coli FhuE receptor precursor FhuE or b1102 SWALL:FHUE_ECOLI (SWALL:P16869) (729 aa) fasta scores: E(): 1.9e-162, 55.86% id in 725 aa
YP_049045.1	Similar to Escherichia coli glucarate dehydratase related protein GudX or b2788 SWALL:GUDX_ECOLI (SWALL:Q46915) (446 aa) fasta scores: E(): 1.4e-101, 55.7% id in 447 aa
YP_049046.1	Similar to Pseudomonas putida major facilitator family transporter pp4758 SWALL:AAN70328 (EMBL:AE016791) (455 aa) fasta scores: E(): 2.5e-78, 48.75% id in 441 aa, and to Agrobacterium vitis  tartrate transporter ttuB SWALL:TUB4_AGRVI (SWALL:Q44470) (433 aa) fasta scores: E(): 3.3e-58, 39.57% id in 427 aa
YP_049047.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein ydgk or stm1458 or stm1460 or sty1662 SWALL:Q8XEX0 (EMBL:AE008763) (146 aa) fasta scores: E(): 0.56, 21.67% id in 143 aa.
YP_049048.1	Similar to Xenorhabdus nematophilus fimbrial major subunit MrxA SWALL:Q8KRT4 (EMBL:AF525420) (179 aa) fasta scores: E(): 9.2e-13, 35% id in 180 aa, and to Salmonella typhimurium fimbrial subunit BcfA or stm0021 SWALL:Q9X604 (EMBL:AF130422) (180 aa) fasta scores: E(): 7.3e-10, 30.68% id in 176 aa, and to Escherichia coli PapA SWALL:Q9AM11 (EMBL:AF332519) (159 aa) fasta scores: E(): 6.2e-08, 27.77% id in 162 aa, and to Escherichia coli adhesion protein PapA SWALL:Q9KHX0 (EMBL:AF247355) (171 aa) fasta scores: E(): 4.8e-07, 26.66% id in 150 aa
YP_049049.1	Similar to Escherichia coli O6 hypothetical protein c3794 SWALL:AAN82238 (EMBL:AE016766) (349 aa) fasta scores: E(): 8.4e-14, 27.55% id in 352 aa
YP_049050.1	Similar to Proteus mirabilis chaperone protein PmfD SWALL:PMFD_PROMI (SWALL:P53520) (254 aa) fasta scores: E(): 8.9e-43, 46.72% id in 229 aa, and to Escherichia coli sfpd SWALL:Q933Y4 (EMBL:AJ131667) (243 aa) fasta scores: E(): 8e-41, 44.93% id in 247 aa, and to Escherichia coli chaperone protein PapD SWALL:PAPD_ECOLI (SWALL:P15319) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa, and to Escherichia coli PrfD SWALL:CAD42028 (EMBL:AJ494981) (239 aa) fasta scores: E(): 2e-36, 42.98% id in 228 aa.
YP_049051.1	Similar to Photorhabdus luminescens MrfC SWALL:Q93MT4 (EMBL:AF396083) (851 aa) fasta scores: E(): 6.4e-137, 43.95% id in 810 aa, and to Proteus mirabilis outer membrane usher protein PmfC precursor pmfC SWALL:PMFC_PROMI (SWALL:P53514) (828 aa) fasta scores: E(): 3e-132, 42.75% id in 807 aa, and to Escherichia coli outer membrane usher protein PapC SWALL:PAPC_ECOLI (SWALL:P07110) (836 aa) fasta scores: E(): 1.6e-126, 43.34% id in 849 aa
YP_049052.1	Similar to Escherichia coli f15 P-fimbriae major subunit precursor FfiA SWALL:P71218 (EMBL:Y08929) (168 aa) fasta scores: E(): 2.8e-17, 38.5% id in 174 aa, and to Serratia marcescens fimbria A protein precursor SmfA SWALL:FMA_SERMA (SWALL:P13421) (174 aa) fasta scores: E(): 1.3e-16, 39.34% id in 183 aa.
YP_049053.1	Similar to Shigella flexneri orf, partial conserved hypothetical protein sf3508 SWALL:AAN44966 (EMBL:AE015359) (254 aa) fasta scores: E(): 2.7e-06, 31.38% id in 137 aa
YP_049054.1	Similar to Salmonella typhi  exported protein FidL or sty4029 SWALL:Q8Z2J0 (EMBL:AL627280) (154 aa) fasta scores: E(): 0.0034, 28.31% id in 113 aa.
YP_049055.1	Similar to Streptomyces coelicolor  transcriptional regulator sco5528 SWALL:O86510 (EMBL:AL939124) (200 aa) fasta scores: E(): 1.3e-08, 28.02% id in 182 aa, and to Streptomyces coelicolor  TetR-family transcriptional regulator sco6299 SWALL:CAD55507 (EMBL:AL939127) (285 aa) fasta scores: E(): 0.00075, 23.6% id in 161 aa
YP_049056.1	Similar to Pasteurella multocida hypothetical protein pm0404 SWALL:Q9CNM3 (EMBL:AE006076) (287 aa) fasta scores: E(): 4.7e-57, 54.31% id in 278 aa, and to Neisseria meningitidis  integral membrane protein nma1777 SWALL:Q9JTH3 (EMBL:AL162757) (287 aa) fasta scores: E(): 3.8e-55, 52.43% id in 267 aa
YP_049057.1	Similar to Salmonella typhi  exported protein sty4152 or t3869 SWALL:Q8Z2B0 (EMBL:AL627281) (179 aa) fasta scores: E(): 3.3e-45, 68.78% id in 173 aa, and to Yersinia pestis  exported protein ypo1003 or y3395 SWALL:AAM86945 (EMBL:AJ414145) (195 aa) fasta scores: E(): 6e-43, 68.86% id in 167 aa
YP_049058.1	Similar to Xanthomonas axonopodis hypothetical protein xac4298 SWALL:Q8PEP7 (EMBL:AE012083) (259 aa) fasta scores: E(): 3.4e-42, 45.2% id in 250 aa, and to Pseudomonas putida conserved hypothetical protein pp3933 SWALL:AAN69527 (EMBL:AE016788) (253 aa) fasta scores: E(): 3.7e-39, 42.57% id in 249 aa
YP_049059.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa1226 SWALL:Q9I4B2 (EMBL:AE004552) (202 aa) fasta scores: E(): 1.3e-38, 56.54% id in 191 aa, and to Rhizobium meliloti transcriptional regulator ra0119 SWALL:Q930S6 (EMBL:AE007206) (204 aa) fasta scores: E(): 9.3e-36, 52.88% id in 191 aa.
YP_049060.1	Similar to Xanthomonas axonopodis NAD(P)H oxidoreductase xac2229 SWALL:Q8PKE6 (EMBL:AE011860) (198 aa) fasta scores: E(): 1.5e-38, 53.88% id in 193 aa, and to Pseudomonas aeruginosa probable NAD(P)H oxidoreductase pa1225 SWALL:Q9I4B3 (EMBL:AE004552) (208 aa) fasta scores: E(): 1.9e-36, 53.6% id in 194 aa
YP_049061.1	no significant database matches
YP_049062.1	no significant database matches
YP_049063.1	Similar to Pseudomonas syringae acetyltransferase Ttr SWALL:TTR_PSESZ (SWALL:P16966) (177 aa) fasta scores: E(): 1.5e-15, 38.56% id in 153 aa, and to Streptomyces coelicolor  acetyltransferase sco6803 or sc1a2.12 SWALL:Q9L229 (EMBL:AL939129) (181 aa) fasta scores: E(): 8.6e-21, 46.75% id in 154 aa
YP_049064.1	Similar to Xanthobacter flavus rubisco operon transcriptional regulator CbbR or CfxO SWALL:CBBR_XANFL (SWALL:P25545) (333 aa) fasta scores: E(): 8.9e-19, 30.3% id in 297 aa, and to Agrobacterium tumefaciens transcriptional regulator, LysR family OxyR or atu0873 or agr_c_1597 SWALL:Q8UH12 (EMBL:AE009053) (316 aa) fasta scores: E(): 5.3e-39, 43.88% id in 278 aa
YP_049065.1	Similar to Salmonella typhimurium YceA protein SWALL:Q8L251 (EMBL:AP005147) (178 aa) fasta scores: E(): 5.6e-45, 60.81% id in 171 aa, and to Agrobacterium tumefaciens acetyltransferase atu0874 or agr_c_1598 SWALL:Q8UH11 (EMBL:AE009053) (206 aa) fasta scores: E(): 1.4e-34, 50.87% id in 171 aa
YP_049066.1	Similar to Bradyrhizobium japonicum MFS permease bll5460 SWALL:BAC50725 (EMBL:AP005955) (416 aa) fasta scores: E(): 2.7e-31, 31.23% id in 397 aa, and to Agrobacterium tumefaciens MFS permease atu0960 or agr_c_1756 SWALL:Q8UGS5 (EMBL:AE009060) (427 aa) fasta scores: E(): 9e-27, 31.8% id in 393 aa
YP_049067.1	Similar to Salmonella typhi hypothetical protein Sty4517 SWALL:Q8Z1M5 (EMBL:AL627282) (97 aa) fasta scores: E(): 3.4e-31, 89.69% id in 97 aa, and to Xanthomonas campestris hypothetical protein Xcc3104 SWALL:Q8P668 (EMBL:AE012426) (96 aa) fasta scores: E(): 2.5e-23, 72.63% id in 95 aa
YP_049068.1	Similar to Salmonella typhi hypothetical protein Sty4668 SWALL:Q8Z1C2 (EMBL:AL627283) (162 aa) fasta scores: E(): 2.2e-45, 89.05% id in 137 aa, and to Salmonella typhimurium  acetyltransferase stm4318 SWALL:Q8ZKC6 (EMBL:AE008902) (163 aa) fasta scores: E(): 2.7e-43, 84.28% id in 140 aa
YP_049069.1	Similar to Pseudomonas putida hypothetical protein Pp3692 SWALL:AAN69289 (EMBL:AE016787) (891 aa) fasta scores: E(): 2.6e-122, 40.84% id in 857 aa, and weakly similar to Campylobacter jejuni RloG SWALL:Q8RJJ2 (EMBL:AF486547) (797 aa) fasta scores: E(): 0.034, 20.58% id in 850 aa, and to Campylobacter jejuni RloE SWALL:Q8RN16 (EMBL:AF486555) (800 aa) fasta scores: E(): 0.12, 21.43% id in 849 aa
YP_049070.1	Similar to Escherichia coli, and Escherichia coli O157:H7 ccda protein CcdA or LetA or protein H SWALL:CCDA_ECOLI (SWALL:P05702) (72 aa) fasta scores: E(): 5.2e-11, 50% id in 72 aa, and to Salmonella typhimurium toxin addiction system: antidote ccda or pslt027 SWALL:Q93GR6 (EMBL:AE006471) (72 aa) fasta scores: E(): 1e-10, 48.61% id in 72 aa
YP_049071.1	Similar to Rhizobium loti hypothetical protein Msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 2.2e-07, 43.47% id in 69 aa, and to Leptospira interrogans predicted transcriptional regulator la0511 SWALL:AAN47710 (EMBL:AE011237) (98 aa) fasta scores: E(): 1.5e-05, 45.9% id in 61 aa
YP_049072.1	Similar to Leptospira interrogans predicted transcriptional regulator la2845 SWALL:AAN50044 (EMBL:AE011449) (98 aa) fasta scores: E(): 6.8e-06, 50.82% id in 61 aa, and to Rhizobium loti hypothetical protein Msr0960 msr0960 SWALL:Q98LM9 (EMBL:AP002996) (83 aa) fasta scores: E(): 2.9e-07, 45.45% id in 66 aa
YP_049073.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or Sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 4.3e-16, 75% id in 64 aa, and to Salmonella typhi transcriptional regulatory protein CII or sty4673 SWALL:Q8Z1B7 (EMBL:AL627283) (73 aa) fasta scores: E(): 3e-19, 79.41% id in 68 aa. Also similar to ECA0513 (91.139% id. in 79 aa overlap), and to ECA3206 (85.714% id. in 70 aa overlap), and to ECA0686 (72.368% id. in 76 aa overlap.)
YP_049074.1	Similar to Escherichia coli ornithine decarboxylase, constitutive SpeC or b2965 SWALL:DCOR_ECOLI (SWALL:P21169) (711 aa) fasta scores: E(): 0, 71.78% id in 716 aa, and to Yersinia pestis ornithine decarboxylase SpeC or ypo0960 or y3347 SWALL:Q8ZHE0 (EMBL:AJ414145) (720 aa) fasta scores: E(): 0, 73.61% id in 720 aa
YP_049075.1	Similar to Streptomyces coelicolor sc10a5.34c protein sco5929 or sc10a5.34C SWALL:O54125 (EMBL:AL939125) (258 aa) fasta scores: E(): 1.7e-24, 38.86% id in 211 aa, and to Halobacterium volcanii oxidoreductase SWALL:O34187 (EMBL:U95375) (255 aa) fasta scores: E(): 4e-08, 28.43% id in 211 aa
YP_049076.1	Similar to Yersinia pestis  tetr-family regulatory protein ypo3840 or y0390 SWALL:AAM83979 (EMBL:AJ414159) (228 aa) fasta scores: E(): 1.4e-33, 71.36% id in 213 aa, and to Rhizobium loti transcriptional regulator mll3386 SWALL:Q98GC7 (EMBL:AP003001) (219 aa) fasta scores: E(): 3.2e-30, 48.66% id in 187 aa
YP_049077.1	Similar to Yersinia pestis hypothetical protein ypo3839 or y0391 SWALL:Q8ZAG3 (EMBL:AJ414159) (405 aa) fasta scores: E(): 1.9e-113, 73.98% id in 396 aa, and to Rhizobium sp. hypothetical protein Y4oU precursor SWALL:Y4OU_RHISN (SWALL:P55606) (402 aa) fasta scores: E(): 2.3e-83, 54.61% id in 401 aa
YP_049078.1	Similar to Yersinia pestis hypothetical protein ypo3838 or y0392 SWALL:AAM83981 (EMBL:AJ414159) (280 aa) fasta scores: E(): 1.4e-93, 88.4% id in 276 aa, and to Rhizobium meliloti hypothetical protein ra0728 or sma1332 SWALL:Q92YY4 (EMBL:AE007260) (280 aa) fasta scores: E(): 9.5e-72, 70.07% id in 274 aa
YP_049079.1	Similar to Agrobacterium tumefaciens hypothetical protein atu2436 or agr_c_4418 SWALL:Q8UCP7 (EMBL:AE009191) (348 aa) fasta scores: E(): 3e-52, 43.37% id in 332 aa, and to Caulobacter crescentus hypothetical protein Cc3039 SWALL:Q9A405 (EMBL:AE005966) (335 aa) fasta scores: E(): 5.4e-20, 29.27% id in 345 aa
YP_049080.1	Similar to Agrobacterium tumefaciens transcriptional regulator, AraC family atu0248 or agr_c_425 SWALL:Q8UIP5 (EMBL:AE008997) (365 aa) fasta scores: E(): 3.7e-23, 33.14% id in 353 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca0926 SWALL:Q9KL23 (EMBL:AE004420) (365 aa) fasta scores: E(): 3.5e-16, 33.69% id in 368 aa
YP_049081.1	Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues
YP_049082.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein yggx or b2962 or z4307 or ecs3838 or sf2959 SWALL:AAN44440 (EMBL:U28377) (91 aa) fasta scores: E(): 1e-29, 87.35% id in 87 aa, and to Salmonella typhimurium, and Salmonella typhi cytoplasmic protein yggx or stm3111 or sty3266 SWALL:Q8XFV6 (EMBL:AE008843) (91 aa) fasta scores: E(): 2.9e-30, 88.5% id in 87 aa
YP_049083.1	Similar to Escherichia coli A/G-specific adenine glycosylase MutY or MicA or b2961 SWALL:MUTY_ECOLI (SWALL:P17802) (350 aa) fasta scores: E(): 3.8e-114, 75.64% id in 349 aa, and to Yersinia pestis adenine glycosylase MutY or y3339 SWALL:AAM86889 (EMBL:AE013935) (415 aa) fasta scores: E(): 1.4e-124, 81.42% id in 350 aa
YP_049084.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_049085.1	Similar to Escherichia coli hypothetical protein yggl or b2959 SWALL:YGGL_ECOLI (SWALL:P38521) (108 aa) fasta scores: E(): 4e-30, 66.66% id in 108 aa, and to Shigella flexneri orf, conserved hypothetical protein yggl or sf2956 SWALL:AAN44437 (EMBL:AE015308) (118 aa) fasta scores: E(): 5e-30, 66.66% id in 108 aa
YP_049086.1	Similar to Salmonella typhimurium  periplasmic protein yggn or stm3107 SWALL:Q8ZM42 (EMBL:AE008842) (239 aa) fasta scores: E(): 1.6e-48, 59.41% id in 239 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yggn or b2958 or c3544 or z4303 or ecs3834 SWALL:YGGN_ECOLI (SWALL:P46143) (239 aa) fasta scores: E(): 1.8e-48, 58.99% id in 239 aa
YP_049087.1	Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa
YP_049088.1	complements the prephenate dehydrogenase dysfunction of an Escherichia coli tyrosine auxotroph strain; member of the aldo/keto reductase 2 family; crystal structure of purified Escherichia coli protein shows bound NADPH
YP_049089.1	Similar to Salmonella typhimurium  Pot family, peptide transport protein ygdr or stm3007 SWALL:Q8ZMA7 (EMBL:AE008838) (72 aa) fasta scores: E(): 5.8e-14, 61.11% id in 72 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein ygdr precursor ygdr or b2833 or c3428 or z4151 or ecs3690 or sf2843 SWALL:AAN81873 (EMBL:U29581) (72 aa) fasta scores: E(): 3.6e-13, 59.72% id in 72 aa
YP_049090.1	Similar to Salmonella typhimurium, and Salmonella typhi  integral membrane transport protein ygdq or stm3006 or sty3149 SWALL:Q8XES3 (EMBL:AE008838) (237 aa) fasta scores: E(): 2.2e-73, 80.34% id in 234 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ygdq ygdq or b2832 or c3427 or z4150 or ecs3689 SWALL:YGDQ_ECOLI (SWALL:Q46931) (237 aa) fasta scores: E(): 6.5e-73, 79.48% id in 234 aa
YP_049091.1	MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair
YP_049092.1	hydrolyzes diadenosine polyphosphate
YP_049093.1	member of a second PTS chain involved in nitrogen metabolism; PtsP phosphorylates NPr
YP_049094.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_049095.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_049096.1	Similar to Escherichia coli prepilin peptidase dependent protein A precursor PpdA or b2826 SWALL:PPDA_ECOLI (SWALL:P33554) (156 aa) fasta scores: E(): 5.2e-19, 40% id in 150 aa, and to Salmonella typhimurium prepilin peptidase dependent protein a, component in type IVpilin biogenesis ppda or stm3000 SWALL:Q8ZMB0 (EMBL:AE008837) (156 aa) fasta scores: E(): 2.7e-20, 39.35% id in 155 aa
YP_049097.1	Similar to Escherichia coli prepilin peptidase dependent protein b precursor PpdB or b2825 SWALL:PPDB_ECOLI (SWALL:P08371) (187 aa) fasta scores: E(): 3.4e-15, 27.12% id in 188 aa, and to Yersinia pestis prepilin peptidase dependent protein ypo1015 or y3169 SWALL:Q8ZH93 (EMBL:AJ414146) (202 aa) fasta scores: E(): 6.3e-33, 51.61% id in 186 aa
YP_049098.1	Similar to Yersinia pestis  membrane protein ypo1016 or y3168 SWALL:Q8ZH92 (EMBL:AJ414146) (156 aa) fasta scores: E(): 2.3e-18, 43.33% id in 150 aa, and to Salmonella typhi hypothetical protein Sty3136 SWALL:Q8Z415 (EMBL:AL627277) (135 aa) fasta scores: E(): 0.00037, 34.24% id in 146 aa
YP_049099.1	Similar to Escherichia coli prepilin peptidase dependent protein C precursor PpdC or b2823 SWALL:PPDC_ECOLI (SWALL:P08372) (107 aa) fasta scores: E(): 2.9, 24.32% id in 111 aa, and to Escherichia coli probable general secretion pathway protein i precursor GspI or b3330 SWALL:GSPI_ECOLI (SWALL:P45760) (125 aa) fasta scores: E(): 2.5, 22.4% id in 125 aa
YP_049100.1	catalyzes ATP-dependent exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides; component of the RecBCD (Exo V) helicase/nuclease complex that is essential for recombination
YP_049101.1	Similar to Escherichia coli protease III precursor PtrA or Ptr or b2821 SWALL:PTRA_ECOLI (SWALL:P05458) (962 aa) fasta scores: E(): 0, 63.68% id in 950 aa, and to Yersinia pestis protease III ptra or ypo1019 or ptr or y3165 SWALL:Q8ZH89 (EMBL:AJ414146) (962 aa) fasta scores: E(): 0, 68.02% id in 960 aa
YP_049102.1	helicase/nuclease; with RecCD catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity
YP_049103.1	helicase/nuclease; with RecBC catalyzes the exonucleolytic cleavage of DNA; RecD has 5' to 3' helicase activity
YP_049104.1	Similar to Salmonella typhi  lacI family transcriptional regulator regulator sty4100 SWALL:Q8Z2E7 (EMBL:AL627280) (351 aa) fasta scores: E(): 1.2e-83, 68.69% id in 329 aa, and to Salmonella typhimurium transcriptional regulator stm3696 SWALL:Q8ZL59 (EMBL:AE008871) (334 aa) fasta scores: E(): 1.8e-83, 67.35% id in 340 aa
YP_049105.1	Similar to Salmonella typhimurium  mandelate racemase / muconate lactonizing enzyme family stm3697 SWALL:Q8ZL58 (EMBL:AE008872) (398 aa) fasta scores: E(): 9.9e-148, 92.96% id in 398 aa, and to Pseudomonas putida mandelate racemase mdlA SWALL:MANR_PSEPU (SWALL:P11444) (359 aa) fasta scores: E(): 1.3e-22, 28.32% id in 353 aa
YP_049106.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_049107.1	Similar to Escherichia coli O6 N-acetylmuramoyl-L-alanine amidase amic precursor AmiC or b2817 or c3411 SWALL:AMIC_ECOLI (SWALL:Q46929) (417 aa) fasta scores: E(): 2.2e-113, 72.46% id in 414 aa, and to Yersinia pestis N-acetylmuramoyl-L-alanine amidase amic ypo1023 SWALL:Q8ZH85 (EMBL:AJ414146) (416 aa) fasta scores: E(): 1.3e-120, 77.31% id in 410 aa
YP_049108.1	membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues
YP_049109.1	Similar to Escherichia coli, and Shigella flexneri dihydrodipicolinate synthase DapA or b2478 or sf2521 SWALL:DAPA_ECOLI (SWALL:P05640) (292 aa) fasta scores: E(): 2.8e-20, 30.45% id in 289 aa, and to Ralstonia solanacearum dihydrodipicolinate synthase dapa or rsc1145 or rs04756 SWALL:DAPA_RALSO (SWALL:Q8Y099) (294 aa) fasta scores: E(): 2.5e-26, 30.71% id in 280 aa
YP_049110.1	Similar to Burkholderia cepacia  transcription factor SWALL:Q93L29 (EMBL:AF029344) (246 aa) fasta scores: E(): 1.6e-16, 29.14% id in 223 aa, and to Ralstonia solanacearum  transcription regulator protein rsc0538 or rs04928 SWALL:Q8Y1Z9 (EMBL:AL646059) (340 aa) fasta scores: E(): 6.6e-16, 37.01% id in 208 aa
YP_049111.1	Similar to Campylobacter jejuni hippurate hydrolase HipO or cj0985C SWALL:HIPO_CAMJE (SWALL:P45493) (383 aa) fasta scores: E(): 1.9e-48, 40.41% id in 386 aa, and to Rhizobium meliloti  amidohydrolase, similar to hippurate hydrolase protein rb0783 or smb21279 SWALL:Q92VC5 (EMBL:AL603644) (389 aa) fasta scores: E(): 1.9e-65, 49.48% id in 386 aa
YP_049112.1	Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein DfpD or atu6074 or agr_pti_146 SWALL:Q8U661 (EMBL:AE009426) (556 aa) fasta scores: E(): 1.7e-107, 54.13% id in 556 aa, and to Rhizobium meliloti  peptide transport system ATP-binding ABC transporter protein r03119 or smc03268 SWALL:Q92LE6 (EMBL:AL591793) (625 aa) fasta scores: E(): 1.3e-93, 48.5% id in 567 aa
YP_049113.1	Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa
YP_049114.1	Similar to Rhizobium meliloti probable ABC transporter, permease protein ra1138 or sma2085 SWALL:Q92XV2 (EMBL:AE007299) (328 aa) fasta scores: E(): 1.3e-81, 66.25% id in 323 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3434 or agr_l_2785 SWALL:Q8UAE0 (EMBL:AE009274) (347 aa) fasta scores: E(): 3.1e-79, 64.92% id in 325 aa
YP_049115.1	Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3433 or agr_l_2786 SWALL:Q8UAE1 (EMBL:AE009273) (585 aa) fasta scores: E(): 1.7e-108, 52.87% id in 522 aa, and to Rhizobium meliloti probable extracellular solute-binding protein, family 5 ra1133 or sma2075 SWALL:Q92XV7 (EMBL:AE007299) (543 aa) fasta scores: E(): 1.6e-100, 49.81% id in 530 aa
YP_049116.1	Similar to Rhodobacter sphaeroides biotin sulfoxide reductase SWALL:BISC_RHOSH (SWALL:P54934) (744 aa) fasta scores: E(): 6.3e-130, 48.13% id in 725 aa, and to Escherichia coli biotin sulfoxide reductase bisc or b3551 SWALL:BISC_ECOLI (SWALL:P20099) (777 aa) fasta scores: E(): 8.5e-72, 39.01% id in 751 aa
YP_049117.1	Similar to Yersinia pestis hypothetical protein ypo1026 or y3158 SWALL:Q8ZH83 (EMBL:AJ414146) (275 aa) fasta scores: E(): 2.2e-88, 88.72% id in 266 aa, and to Escherichia coli hypothetical protein ygdl or b2812 SWALL:YGDL_ECOLI (SWALL:Q46927) (268 aa) fasta scores: E(): 1.4e-78, 77.81% id in 266 aa
YP_049118.1	Similar to Yersinia pestis hypothetical protein ypo1027 or y3157 SWALL:AAM86707 (EMBL:AJ414146) (147 aa) fasta scores: E(): 1.3e-34, 64.28% id in 140 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ygdk or b2811 or z4128 or ecs3671 SWALL:YGDK_ECOLI (SWALL:Q46926) (147 aa) fasta scores: E(): 2.4e-31, 60.27% id in 146 aa
YP_049119.1	Similar to Escherichia coli cysteine sulfinate desulfinase CsdA or b2810 SWALL:CSDA_ECOLI (SWALL:Q46925) (401 aa) fasta scores: E(): 1.6e-104, 69.82% id in 401 aa, and to Salmonella typhimurium  selenocysteine lyase csda or stm2984 SWALL:Q8ZMC3 (EMBL:AE008836) (401 aa) fasta scores: E(): 3.2e-101, 67.83% id in 401 aa
YP_049120.1	Similar to Escherichia coli, and Escherichia coli O6 hypothetical lipoprotein ygdi precursor ygdi or b2809 or c3380 SWALL:YGDI_ECOLI (SWALL:Q46924) (75 aa) fasta scores: E(): 1.6e-14, 61.11% id in 72 aa, and to Shigella flexneri orf, conserved hypothetical protein ygdi or sf2823 SWALL:AAN44310 (EMBL:AE015296) (76 aa) fasta scores: E(): 4.2e-14, 59.72% id in 72 aa
YP_049121.1	Similar to Saccharomyces cerevisiae hypothetical 11.6 kDa protein in nut1-aro2 intergenic region precursor ygl149w or g1895 SWALL:YGO9_YEAST (SWALL:P53116) (101 aa) fasta scores: E(): 4.7, 37.09% id in 62 aa, and to Streptococcus pyogenes hypothetical protein Spym3_0087 spym3_0087 SWALL:Q8K8V4 (EMBL:AE014138) (102 aa) fasta scores: E(): 4.8, 33.33% id in 60 aa
YP_049122.1	Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence
YP_049123.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ygdd ygdd or b2807 or c3377 or z4124 or ecs3667 or sf2821 SWALL:AAN44308 (EMBL:X73413) (131 aa) fasta scores: E(): 1.9e-42, 78.62% id in 131 aa, and to Salmonella typhimurium, and Salmonella typhi  small membrane protein ygdd or stm2981 or sty3121 SWALL:Q8XEU8 (EMBL:AE008836) (131 aa) fasta scores: E(): 3.7e-41, 75.57% id in 131 aa
YP_049124.1	Similar to Yersinia pestis hypothetical protein ypo1031 or y3152 SWALL:AAM86702 (EMBL:AJ414146) (368 aa) fasta scores: E(): 6.5e-129, 79.17% id in 365 aa, and to Salmonella typhimurium, and Salmonella typhi sam-dependent methyltransferase ygde or stm2980 or sty3120 SWALL:Q8XFI3 (EMBL:AE008836) (366 aa) fasta scores: E(): 5.3e-123, 75.41% id in 366 aa
YP_049125.1	has 3'-5' exonuclease activity that preferentially acts on ssDNA; also 3'-phosphodiesterase activity at sites with 3' incised apurinic/apyrimidinic sites; can remove 3' phosphoglycolate groups
YP_049126.1	Similar to Salmonella typhimurium  nucleotide binding ygdh or stm2969 SWALL:Q8ZMD2 (EMBL:AE008836) (454 aa) fasta scores: E(): 4.8e-158, 86.78% id in 454 aa, and to Yersinia pestis hypothetical protein ypo1033 or y3148 SWALL:AAM86698 (EMBL:AJ414146) (454 aa) fasta scores: E(): 2e-157, 86.12% id in 454 aa
YP_049127.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_049128.1	SecY regulator that either chelates excess SecY or negatively regulates the SecYE translocase function
YP_049129.1	Previously sequenced as Erwinia carotovora exoenzymes regulatory protein AepA precursor SWALL:AEPA_ERWCA (SWALL:Q06555) (465 aa) fasta scores: E(): 1.2e-152, 90.28% id in 453 aa
YP_049130.1	Similar to Neisseria meningitidis transcriptional regulator, MarR family nmb1585 SWALL:Q9JYH5 (EMBL:AE002509) (143 aa) fasta scores: E(): 1.1e-18, 40.71% id in 140 aa, and to Neisseria meningitidis transcriptional regulator nma1774 SWALL:Q9JTH6 (EMBL:AL162757) (120 aa) fasta scores: E(): 2.4e-15, 45.53% id in 112 aa
YP_049131.1	Similar to Yersinia pestis hypothetical protein Ypo1037 SWALL:Q8ZH73 (EMBL:AJ414146) (110 aa) fasta scores: E(): 9.2e-20, 55.04% id in 109 aa, and to Salmonella typhi hypothetical protein yqcc or sty3104 SWALL:Q8Z438 (EMBL:AL627276) (109 aa) fasta scores: E(): 3.6e-15, 45.79% id in 107 aa
YP_049132.1	catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp
YP_049133.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_049134.1	Similar to Yersinia pestis hypothetical protein ypo1040 or y3141 SWALL:AAM86691 (EMBL:AJ414146) (129 aa) fasta scores: E(): 3.2e-38, 84.49% id in 129 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yaeh or b0163 or c0200 or z0175 or ecs0167 or sf0155 SWALL:AAN41817 (EMBL:D26562) (128 aa) fasta scores: E(): 8.4e-38, 85.82% id in 127 aa
YP_049135.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_049136.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_049137.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_049138.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_049139.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_049140.1	Catalyzes the phosphorylation of UMP to UDP
YP_049141.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_049142.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_049143.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri undecaprenyl pyrophosphate synthetase upps or rth or b0174 or c0211 or z0185 or ecs0176 or sf0164 SWALL:UPPS_ECOLI (SWALL:Q47675) (253 aa) fasta scores: E(): 1.7e-79, 77.77% id in 252 aa
YP_049144.1	catalyzes the synthesis of CDP-diglyceride from CTP and phosphatidate
YP_049145.1	catalyzes the cleavage of RseA which activates the sigmaE-mediated stress response
YP_049146.1	part of a complex with YfgL, YfiO, and NlpB involved in outer membrane protein biosynthesis; involved in the assembly of outer membrane proteins
YP_049147.1	Similar to Yersinia enterocolitica cationic 19 kDa outer membrane protein precursor OmpH SWALL:OMPH_YEREN (SWALL:P31519) (164 aa) fasta scores: E(): 3.7e-40, 84.24% id in 165 aa, and to Yersinia pestis cationic 19 kDa outer membrane protein precursor OmpH or ypo1053 or y3126 SWALL:OMPH_YERPE (SWALL:P58607) (165 aa) fasta scores: E(): 9.9e-42, 86.06% id in 165 aa
YP_049148.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_049149.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_049150.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_049151.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_049152.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_049153.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase
YP_049154.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_049155.1	Similar to Escherichia coli hypothetical protein yaer or b0187 SWALL:YAER_ECOLI (SWALL:P52096) (129 aa) fasta scores: E(): 1.2e-37, 71.87% id in 128 aa, and to Shigella flexneri orf, conserved hypothetical protein yaer or sf0177 SWALL:AAN41839 (EMBL:AE015054) (138 aa) fasta scores: E(): 1.3e-37, 71.87% id in 128 aa
YP_049156.1	Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU; ATP-dependent; responsible for modifying the wobble-base of the CAU anticodon of tRNAIle such that it exhibits proper recognition of the AUA codon rather than the AUG codon and is in turn properly recognized by isoleucyl-tRNA synthetase
YP_049157.1	Suppresses temperature-sensitive mutations in essential genes by modulating rho-dependent transcription termination
YP_049158.1	Similar to Yersinia pestis hypothetical protein Ypo1065 SWALL:Q8ZH46 (EMBL:AJ414146) (182 aa) fasta scores: E(): 2.4e-56, 75.28% id in 178 aa, and to Escherichia coli O6 hypothetical protein yaeq or c0229 SWALL:AAN78721 (EMBL:AE016755) (181 aa) fasta scores: E(): 6e-48, 62.22% id in 180 aa
YP_049159.1	Similar to Escherichia coli copper homeostasis protein CutF precursor or NlpE or b0192 SWALL:CUTF_ECOLI (SWALL:P40710) (236 aa) fasta scores: E(): 8.9e-40, 49.55% id in 224 aa, and to Yersinia pestis  copper homeostasis lipoprotein CutF or ypo1067 or y3110 SWALL:AAM86660 (EMBL:AJ414146) (242 aa) fasta scores: E(): 1.5e-46, 53.71% id in 229 aa
YP_049160.1	This protein performs the mismatch recognition step during the DNA repair process
YP_049161.1	Similar to Escherichia coli  prophage cp4-6 integrase IntF or b0281 SWALL:INTF_ECOLI (SWALL:P71298) (466 aa) fasta scores: E(): 0.0029, 24.6% id in 443 aa, and to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 1.2, 24.71% id in 445 aa
YP_049162.1	Similar to the N-terminal region of Escherichia coli O6 hypothetical protein c4514 SWALL:AAN82950 (EMBL:AE016769) (594 aa) fasta scores: E(): 4e-11, 70.83% id in 48 aa
YP_049163.1	Similar to Shigella flexneri  reverse transcriptase s0042 SWALL:Q9AFX2 (EMBL:AF348706) (405 aa) fasta scores: E(): 0.046, 21.24% id in 353 aa, and to Streptococcus agalactiae prophage lambdasa1, reverse transcriptase/maturase family protein sag0567 SWALL:AAM99468 (EMBL:AE014217) (439 aa) fasta scores: E(): 0.97, 22.78% id in 373 aa
YP_049164.1	Similar to Staphylococcus aureus orf7 protein SWALL:BAC22947 (EMBL:AB057421) (610 aa) fasta scores: E(): 5.2e-08, 23.82% id in 617 aa, and to Lactococcus lactis AbiK abiK SWALL:Q48614 (EMBL:U35629) (599 aa) fasta scores: E(): 0.001, 23.78% id in 454 aa
YP_049165.1	no significant database matches
YP_049166.1	Similar to Escherichia coli O157:H7  site specific recombinase ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 3.9e-44, 35.44% id in 395 aa, and to Staphylococcus aureus transposase a from transposon tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 0.039, 23.1% id in 303 aa
YP_049167.1	Similar to Pasteurella multocida hypothetical protein Pm1948 SWALL:Q9CJP6 (EMBL:AE006231) (506 aa) fasta scores: E(): 7.1e-30, 27.86% id in 506 aa, and to Escherichia coli O157:H7 hypothetical protein z3943 or ecs3511 SWALL:Q8X972 (EMBL:AE005493) (441 aa) fasta scores: E(): 6e-29, 28.63% id in 433 aa
YP_049168.1	Similar to Escherichia coli O157:H7 hypothetical protein Z3942 SWALL:Q8X403 (EMBL:AE005493) (470 aa) fasta scores: E(): 1.1e-27, 33% id in 506 aa, and to Pasteurella multocida hypothetical protein Pm1947 SWALL:Q9CJP7 (EMBL:AE006231) (678 aa) fasta scores: E(): 2.3e-39, 26.83% id in 641 aa
YP_049169.1	Similar to Escherichia coli O157:H7 hypothetical protein Ecs3509 SWALL:Q8X5G1 (EMBL:AP002562) (132 aa) fasta scores: E(): 1.5e-12, 39.84% id in 128 aa, and to Pasteurella multocida hypothetical protein Pm1946 SWALL:Q9CJP8 (EMBL:AE006231) (136 aa) fasta scores: E(): 1.5e-10, 35.07% id in 134 aa
YP_049170.1	Similar to Escherichia coli O157:H7 hypothetical protein z3940 or ecs3508 SWALL:Q8X976 (EMBL:AE005493) (156 aa) fasta scores: E(): 0.0053, 26.66% id in 150 aa
YP_049171.1	no significant database matches
YP_049172.1	no significant database matches
YP_049173.1	no significant database matches
YP_049174.1	Similar to Chromobacterium violaceum hypothetical protein cv0650 SWALL:Q7P0B7 (EMBL:AE016912) (423 aa) fasta scores: E(): 1.3e-22, 38.4% id in 440 aa
YP_049175.1	Similar to Yersinia pestis hypothetical y4069 SWALL:AAM87613 (EMBL:AE014008) (195 aa) fasta scores: E(): 2.9e-36, 52.38% id in 189 aa, and to Erwinia pyrifoliae conserved hypothetical membrane protein SWALL:AAN04542 (EMBL:AY123045) (178 aa) fasta scores: E(): 4.6e-18, 37.05% id in 170 aa
YP_049176.1	Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (Hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 0.01, 36.64% id in 161 aa, and to Escherichia coli O157:H7 z0248 protein z0248 or ecs0216 SWALL:Q8X7X3 (EMBL:AE005197) (159 aa) fasta scores: E(): 8.6e-31, 52.83% id in 159 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA1076 (49.057% identity in 159aa overlap) and ECA3672 (46.154% identity in 156aa overlap) and ECA0456 (45.912% identity in 159aa overlap).
YP_049177.1	Similar to Salmonella typhimurium 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase stm2922 SWALL:Q8ZMG0 (EMBL:AE008833) (475 aa) fasta scores: E(): 1.6e-171, 89.87% id in 474 aa, and to Salmonella typhi hypothetical protein Sty3047 sty3047 SWALL:Q8Z475 (EMBL:AL627276) (475 aa) fasta scores: E(): 4.4e-171, 89.66% id in 474 aa
YP_049178.1	Similar to Escherichia coli O157:H7 orf, hypothetical protein z4045 or ecs3591 SWALL:Q8X7Z8 (EMBL:AE005501) (78 aa) fasta scores: E(): 7.7e-25, 81.33% id in 75 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein stm2923 or sty3048 SWALL:Q8XEM2 (EMBL:AE008833) (78 aa) fasta scores: E(): 2.1e-24, 78.66% id in 75 aa
YP_049179.1	Similar to Pseudomonas putida glutathione S-transferase family protein pp2474 SWALL:AAN68086 (EMBL:AE016783) (206 aa) fasta scores: E(): 4.5e-48, 60.97% id in 205 aa, and to Vibrio vulnificus glutathione S-transferase vv20508 SWALL:AAO07458 (EMBL:AE016809) (205 aa) fasta scores: E(): 1e-39, 55.39% id in 204 aa
YP_049180.1	Part of the FecBCDE citrate-dependent iron (III) transport system
YP_049181.1	Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.
YP_049182.1	part of the FecBCDE citrate-dependent iron (III) transport system
YP_049183.1	part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+)
YP_049184.1	Similar to Escherichia coli iron FecA or b4291 SWALL:FECA_ECOLI (SWALL:P13036) (774 aa) fasta scores: E(): 0, 80.56% id in 782 aa, and to Pseudomonas aeruginosa FecA or pa3901 SWALL:Q9HXB2 (EMBL:AE004807) (784 aa) fasta scores: E(): 1.6e-196, 62.43% id in 788 aa
YP_049185.1	with FecA forms the FecAR signal transduction system; ferric citrate binds FecA and transmits a signal across the outer membrane to FecR. FecR transmits a signal across the cytoplasmic membrane and activates the sigma 70 protein FecI that directs the RNA polymerase to express the fecABCDE operon
YP_049186.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates the genes for iron dicitrate transport
YP_049187.1	no significant database matches
YP_049188.1	Similar to Escherichia coli O6 hypothetical protein ylab or c0575 SWALL:AAN79053 (EMBL:AE016756) (518 aa) fasta scores: E(): 1.1e-54, 35.17% id in 506 aa, and to Shigella flexneri orf, conserved hypothetical protein sf0402 SWALL:AAN42058 (EMBL:AE015072) (518 aa) fasta scores: E(): 3.2e-53, 34.58% id in 506 aa
YP_049189.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PhnA protein or b4108 or c5113 or z5710 or ecs5090 or sf4115 SWALL:PHNA_ECOLI (SWALL:P16680) (111 aa) fasta scores: E(): 1.1e-29, 76.36% id in 110 aa, and to Yersinia pestis hypothetical protein ypo2730 or PhnA or y1563 SWALL:Q8ZD62 (EMBL:AJ414153) (113 aa) fasta scores: E(): 4.9e-33, 79.64% id in 113 aa
YP_049190.1	membrane-bound lytic murein transglycosylase B; catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycan
YP_049191.1	Similar to Pseudomonas putida membrane protein, pp4663 SWALL:AAN70236 (EMBL:AE016791) (254 aa) fasta scores: E(): 6.2e-44, 56.84% id in 241 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0278 pa0278 SWALL:Q9I6L2 (EMBL:AE004466) (250 aa) fasta scores: E(): 8.1e-44, 55.04% id in 238 aa
YP_049192.1	Similar to Ralstonia solanacearum probable transcription regulator protein rsp1267 or rs05312 SWALL:Q8XQG0 (EMBL:AL646083) (294 aa) fasta scores: E(): 7.6e-52, 47.27% id in 294 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.4e-46, 44.71% id in 293 aa
YP_049193.1	Similar to the C-terminal regions of several including Pseudomonas aeruginosa hypothetical protein Pa1107 pa1107 SWALL:Q9I4M8 (EMBL:AE004541) (398 aa) fasta scores: E(): 2.1e-17, 39.68% id in 189 aa, and to Xanthomonas axonopodis ggdef family protein xac1939 SWALL:Q8PL67 (EMBL:AE011829) (948 aa) fasta scores: E(): 5.2e-16, 37.43% id in 203 aa
YP_049194.1	Similar to Leptospira interrogans hypothetical protein la1420 SWALL:AAN48619 (EMBL:AE011322) (124 aa) fasta scores: E(): 0.0042, 31.06% id in 132 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0170 SWALL:Q9I6W2 (EMBL:AE004455) (126 aa) fasta scores: E(): 0.048, 30.88% id in 136 aa
YP_049195.1	Similar to Leptospira interrogans conserved hypothetical protein la1421 SWALL:AAN48620 (EMBL:AE011322) (184 aa) fasta scores: E(): 9.5e-09, 26.94% id in 167 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0171 SWALL:Q9I6W1 (EMBL:AE004455) (180 aa) fasta scores: E(): 2.9e-06, 27.38% id in 168 aa
YP_049196.1	Similar to the C terminal regions of Pseudomonas aeruginosa hypothetical protein Pa0172 SWALL:Q9I6W0 (EMBL:AE004455) (663 aa) fasta scores: E(): 8.8e-25, 35.13% id in 259 aa, and to Leptospira interrogans serine/threonine protein kinases la1422 SWALL:AAN48621 (EMBL:AE011322) (1780 aa) fasta scores: E(): 6.6e-23, 29.93% id in 324 aa
YP_049197.1	Weakly similar to Thermotoga maritima lipase, tm1350 SWALL:Q9X171 (EMBL:AE001789) (259 aa) fasta scores: E(): 3e-06, 28.31% id in 226 aa, and to Yersinia pestis membrane protein ypo4014 or y4035 SWALL:Q8ZA12 (EMBL:AJ414160) (487 aa) fasta scores: E(): 6.9e-07, 24.4% id in 295 aa
YP_049198.1	Similar to Escherichia coli uxu operon transcriptional regulator UxuR or b4324 SWALL:UXUR_ECOLI (SWALL:P39161) (257 aa) fasta scores: E(): 2.8e-47, 54.91% id in 244 aa, and to Yersinia pestis  transcriptional regulatory protein ypo1279 or UxuR or y2904 SWALL:Q8ZGL0 (EMBL:AJ414147) (266 aa) fasta scores: E(): 1e-67, 71.95% id in 246 aa
YP_049199.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_049200.1	Similar to Erwinia carotovora pectate lyase PelB SWALL:Q47471 (EMBL:X79232) (347 aa) fasta scores: E(): 1.3e-129, 93.66% id in 347 aa, and to Erwinia carotovora pectate lyase Pel-3 SWALL:Q47465 (EMBL:L32172) (347 aa) fasta scores: E(): 1.6e-128, 92.5% id in 347 aa, and to Erwinia chrysanthemi endo-pectate lyase precursor PelI SWALL:O50325 (EMBL:Y13340) (344 aa) fasta scores: E(): 6e-87, 64.57% id in 350 aa.
YP_049201.1	Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa
YP_049202.1	Similar to Pseudomonas putida protein secretion ABC efflux system, membrane fusion protein pp0803 SWALL:AAN66428 (EMBL:AE016777) (394 aa) fasta scores: E(): 9.1e-67, 54.23% id in 378 aa, and to Escherichia coli O157:H7  membrane spanning export protein z0635 or ecs0544 SWALL:Q8XD11 (EMBL:AE005229) (391 aa) fasta scores: E(): 2.9e-66, 54.3% id in 372 aa
YP_049203.1	Similar to Pseudomonas putida protein secretion ABC efflux system, permease and ATP-binding protein pp0804 SWALL:AAN66429 (EMBL:AE016777) (722 aa) fasta scores: E(): 5.9e-111, 46.31% id in 691 aa, and to Salmonella typhi type i secretion protein, ATP-binding protein sty2877 SWALL:Q8Z4H9 (EMBL:AL627276) (718 aa) fasta scores: E(): 1.4e-103, 42.34% id in 692 aa
YP_049204.1	Similar to Escherichia coli O157:H7  outer membrane export protein z0608 or ecs0540 SWALL:Q8XD20 (EMBL:AE005228) (451 aa) fasta scores: E(): 2.7e-75, 50.56% id in 439 aa, and to Ralstonia solanacearum  outer membrane efflux transmembrane protein rsp1181 or rs06134 SWALL:Q8XQP1 (EMBL:AL646083) (483 aa) fasta scores: E(): 1.9e-23, 29.39% id in 398 aa
YP_049205.1	Similar to Salmonella typhi protein sty2875 SWALL:Q8Z4I1 (EMBL:AL627276) (3624 aa) fasta scores: E(): 1.9e-41, 26.46% id in 3438 aa, and to Yersinia pestis autotransporter protein yaph or ypo1004 SWALL:Q8ZHA1 (EMBL:AJ414146) (3705 aa) fasta scores: E(): 8e-31, 23.21% id in 3584 aa
YP_049206.1	Similar to Escherichia coli O157:H7 hypothetical protein z0609 or ecs0541 SWALL:Q8XD19 (EMBL:AE005228) (1461 aa) fasta scores: E(): 1.7e-61, 34.15% id in 1253 aa, and to Salmonella typhi proline/threonine-rich protein SWALL:Q9X6M3 (EMBL:AF139831) (1605 aa) fasta scores: E(): 1e-14, 27.68% id in 1239 aa
YP_049207.1	efflux pump for the antibacterial peptide microcin J25
YP_049208.1	Similar to Erwinia chrysanthemi L-asparaginase precursor AnsB or Asn SWALL:ASPG_ERWCH (SWALL:P06608) (348 aa) fasta scores: E(): 8.8e-95, 77.16% id in 346 aa, and to Salmonella typhimurium  L-asparaginase stm3598 SWALL:Q8ZLD3 (EMBL:AE008866) (347 aa) fasta scores: E(): 9.5e-87, 70.23% id in 346 aa
YP_049209.1	type II enzyme similar to type I but differentially regulated and with a lower Km; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_049210.1	Similar to Yersinia pestis hypothetical protein ypo3213 or y0973 SWALL:AAM84554 (EMBL:AJ414155) (95 aa) fasta scores: E(): 8.5e-26, 75.53% id in 94 aa, and to Salmonella typhi hypothetical protein Sty0424 SWALL:Q8Z8Y9 (EMBL:AL627266) (94 aa) fasta scores: E(): 4.3e-24, 73.4% id in 94 aa
YP_049211.1	Similar to Yersinia pestis  methyl-accepting chemotaxis protein Tsr2 or ypo1229 SWALL:Q8ZGQ7 (EMBL:AJ414147) (595 aa) fasta scores: E(): 1.4e-120, 62.91% id in 596 aa, and to Ralstonia solanacearum methyl-accepting chemotaxis transmembrane protein rsc0606 or rs06104 SWALL:Q8Y1T3 (EMBL:AL646060) (617 aa) fasta scores: E(): 3.5e-102, 52.42% id in 599 aa
YP_049212.1	Required for efficient pilin antigenic variation
YP_049213.1	catalyzes phosphorylation of fructose; cytosolic enzyme
YP_049214.1	Similar to Escherichia coli exonuclease SbcC or RmuA or b0397 SWALL:SBCC_ECOLI (SWALL:P13458) (1048 aa) fasta scores: E(): 2.3e-52, 44.02% id in 1231 aa, and to Yersinia pestis ATP-dependent dsdna exonuclease SbcC or y0976 SWALL:AAM84557 (EMBL:AE013701) (1229 aa) fasta scores: E(): 2e-154, 50.04% id in 1233 aa
YP_049215.1	with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity
YP_049216.1	Similar to Escherichia coli, and Escherichia coli O157:H7 phosphate regulon transcriptional regulatory protein PhoB or b0399 or z0497 or ecs0449 SWALL:PHOB_ECOLI (SWALL:P08402) (229 aa) fasta scores: E(): 1.5e-81, 89.08% id in 229 aa, and to Yersinia pestis phosphate regulon transcriptional regulatory protein PhoB or ypo3205 SWALL:Q8ZC21 (EMBL:AJ414155) (229 aa) fasta scores: E(): 1.6e-84, 93.88% id in 229 aa
YP_049217.1	membrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB
YP_049218.1	Similar to Yersinia pestis phosphate binding protein PstS or ypo3203 or y0980 SWALL:Q8ZC23 (EMBL:AJ414155) (354 aa) fasta scores: E(): 1.9e-76, 68.88% id in 286 aa, and to Pseudomonas aeruginosa phosphate binding protein psts or pa5369 SWALL:Q9Z9M3 (EMBL:AB017492) (323 aa) fasta scores: E(): 1.3e-62, 54.91% id in 295 aa
YP_049219.1	catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate
YP_049220.1	Similar to Salmonella typhimurium, and Salmonella typhi branched-chain amino acid transport system II carrier protein BrnQ or stm0399 or sty0435 SWALL:BRNQ_SALTY (SWALL:P14931) (439 aa) fasta scores: E(): 3.3e-125, 77.13% id in 433 aa, and to Yersinia pestis branched-chain amino acid transport system II carrier protein BrnQ or ypo3202 or y0981 SWALL:Q8ZC24 (EMBL:AJ414155) (439 aa) fasta scores: E(): 1.6e-132, 79.49% id in 439 aa
YP_049221.1	cryptic permease that may be involved in the transport of proline across the inner membrane; in Salmonella typhimurium, the proY gene is silent unless overexpressed on a multicopy plasmid or activated by a proZ mutation
YP_049222.1	Similar to Yersinia pestis  membrane protein ypo2470 or y1720 SWALL:Q8ZDT6 (EMBL:AJ414152) (415 aa) fasta scores: E(): 1.4e-108, 66.26% id in 415 aa, and to Salmonella typhi  membrane protein sty0618 or ybdg or t2292 SWALL:Q8Z8M7 (EMBL:AL627267) (415 aa) fasta scores: E(): 6.9e-100, 62.71% id in 405 aa
YP_049223.1	Similar to Yersinia pestis  alkyl hydroperoxide reductase subunit C AhpC or ypo3194 or y0988 SWALL:AAM84569 (EMBL:AJ414155) (200 aa) fasta scores: E(): 2.6e-76, 91.5% id in 200 aa, and to Vibrio vulnificus peroxiredoxin vv10453 SWALL:AAO08975 (EMBL:AE016798) (202 aa) fasta scores: E(): 1.4e-61, 73.5% id in 200 aa
YP_049224.1	Similar to Yersinia pestis hypothetical protein Ypo3193 SWALL:Q8ZC31 (EMBL:AJ414155) (193 aa) fasta scores: E(): 1.5e-53, 70.98% id in 193 aa, and to Escherichia coli hypothetical protein yajb or b0404 SWALL:YAJB_ECOLI (SWALL:P21515) (193 aa) fasta scores: E(): 1.5e-45, 58.54% id in 193 aa
YP_049225.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_049226.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_049227.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_049228.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_049229.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_049230.1	Similar to Escherichia coli hypothetical lipoprotein yaji precursor yaji or b0412 SWALL:YAJI_ECOLI (SWALL:P46122) (179 aa) fasta scores: E(): 7.9e-16, 34.46% id in 177 aa, and to Salmonella typhimurium  outer membrane lipoprotein yaji or stm0414 SWALL:Q8ZRD6 (EMBL:AE008714) (179 aa) fasta scores: E(): 9.1e-16, 34.46% id in 177 aa
YP_049231.1	Similar to Salmonella typhimurium hypothetical protein ybad or stm0415 SWALL:YBAD_SALTY (SWALL:Q8ZRD5) (149 aa) fasta scores: E(): 1.3e-50, 89.26% id in 149 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybad or b0413 or c0523 or z0514 or ecs0466 SWALL:YBAD_ECOLI (SWALL:P25538) (149 aa) fasta scores: E(): 1.6e-50, 89.26% id in 149 aa
YP_049232.1	riboflavin biosynthesis protein which catalyzes the deamination and reduction steps in the riboflavin biosynthesis pathway; catalyzes the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and the formation of 5-amino-6-(5-phosphoribosylamino)uracil from 5-amino-6-(5-phosphoribitylamino)uracil
YP_049233.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_049234.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_049235.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_049236.1	hydrolyzes phosphatidylglycerophosphate to produce phosphatidylglycerol and phosphate
YP_049237.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_049238.1	Similar to Escherichia coli geranyltranstransferase IspA or b0421 SWALL:ISPA_ECOLI (SWALL:P22939) (299 aa) fasta scores: E(): 4.8e-79, 71.76% id in 301 aa
YP_049239.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_049240.1	Required for the synthesis of the thiazole moiety
YP_049241.1	Similar to Escherichia coli 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme ThiJ or b0424 SWALL:THIJ_ECOLI (SWALL:Q46948) (196 aa) fasta scores: E(): 8.7e-55, 70.91% id in 196 aa
YP_049242.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_049243.1	nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_049244.1	Similar to Yersinia pestis  transporter ypo3169 or y1017 SWALL:AAM84598 (EMBL:AJ414155) (456 aa) fasta scores: E(): 3.6e-130, 78.41% id in 454 aa, and to Escherichia coli O6 hypothetical transport protein yajr or c0538 SWALL:AAN79016 (EMBL:AE016756) (520 aa) fasta scores: E(): 2.3e-119, 71.58% id in 454 aa
YP_049245.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_049246.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri cytochrome o ubiquinol oxidase protein CyoD or b0429 or z0532 or ecs0483 or sf0370 SWALL:CYOD_ECOLI (SWALL:P18403) (109 aa) fasta scores: E(): 5.7e-26, 67.27% id in 110 aa
YP_049247.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome o ubiquinol oxidase subunit iii CyoC or b0430 or c0541 or sf0371 SWALL:CYOC_ECOLI (SWALL:P18402) (204 aa) fasta scores: E(): 2.7e-67, 78.53% id in 205 aa
YP_049248.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ubiquinol oxidase polypeptide I CyoB or b0431 or c0542 or z0534 or ecs0485 SWALL:CYOB_ECOLI (SWALL:P18401) (663 aa) fasta scores: E(): 0, 82.95% id in 663 aa
YP_049249.1	Similar to Escherichia coli, and Escherichia coli O6 ubiquinol oxidase polypeptide ii precursor CyoA or b0432 or c0543 SWALL:CYOA_ECOLI (SWALL:P18400) (315 aa) fasta scores: E(): 2.4e-82, 67.18% id in 320 aa
YP_049250.1	in Escherichia coli this protein is a permease involved in peptidoglycan recycling; member of major facilitator superfamily; MFS; inner membrane protein
YP_049251.1	Similar to Yersinia pestis  lipoprotein ypo3161 or y1024 SWALL:AAM84605 (EMBL:AJ414155) (192 aa) fasta scores: E(): 7.8e-54, 80.2% id in 192 aa, and to Salmonella typhi  lipoprotein sty0487 SWALL:Q8Z8V2 (EMBL:AL627266) (192 aa) fasta scores: E(): 2.3e-47, 68.75% id in 192 aa
YP_049252.1	positive transcriptional regulator of morphogenetic pathway; controlling several genes involved in oxidative stress, acid stress, heat shock, osmotic shock, and carbon-starvation stress
YP_049253.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_049254.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_049255.1	binds and unfolds substrates as part of the ClpXP protease
YP_049256.1	Similar to Escherichia coli, and Escherichia coli O6 ATP-dependent protease La Lon or CapR or Deg or Muc or LopA or b0439 or c0555 SWALL:LON_ECOLI (SWALL:P08177) (784 aa) fasta scores: E(): 0, 92.83% id in 782 aa
YP_049257.1	histone-like DNA-binding protein
YP_049258.1	Similar to Escherichia coli, and Escherichia coli O6 peptidyl-prolyl cis-trans isomerase D PpiD or b0441 or c0557 SWALL:PPID_ECOLI (SWALL:P77241) (623 aa) fasta scores: E(): 7.8e-123, 57.5% id in 626 aa
YP_049259.1	Similar to Salmonella typhimurium, and Salmonella typhi  DNA uptake protein and related dna-binding proteins ybav or stm0453 or sty0495 SWALL:Q8XGV0 (EMBL:AE008716) (124 aa) fasta scores: E(): 5.3e-15, 48.78% id in 123 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ybav precursor ybav or b0442 or sf0387 SWALL:AAN42043 (EMBL:AE000150) (123 aa) fasta scores: E(): 2.8e-13, 49.19% id in 124 aa
YP_049260.1	Similar to Yersinia pestis hypothetical protein Ypo3151 ypo3151 SWALL:Q8ZC71 (EMBL:AJ414155) (135 aa) fasta scores: E(): 1.5e-32, 65.38% id in 130 aa, and to Yersinia pestis hypothetical protein y1033 SWALL:AAM84614 (EMBL:AE013707) (141 aa) fasta scores: E(): 1.5e-32, 65.38% id in 130 aa
YP_049261.1	YbaX; catalyzes the transformation of GTP to 7-cyano-7-deazaguanine (preQ0), as one of the early reactions of quenosine biosynthesis; quenosine is a modified nucleoside that occurs at the wobble position of GUN anticodons in tRNAs for Asn, Asp, Tyr, and His
YP_049262.1	Similar to Yersinia pestis  pyridoxal-phosphate dependent protein ypo3147 or y1037 SWALL:Q8ZC75 (EMBL:AJ414155) (346 aa) fasta scores: E(): 1.4e-117, 83.47% id in 345 aa, and to Salmonella typhimurium cysteine synthase/cystathionine beta-synthase stm0458 SWALL:Q8ZRB5 (EMBL:AE008717) (351 aa) fasta scores: E(): 1.6e-105, 76.38% id in 343 aa
YP_049263.1	Similar to Yersinia pestis probable asnc-family regulatory protein ypo3146 or y1038 SWALL:AAM84619 (EMBL:AJ414155) (153 aa) fasta scores: E(): 1.1e-48, 80.13% id in 151 aa, and to Salmonella typhimurium, and Salmonella typhi  transcriptional regulator ybao or stm0459 or sty0502 SWALL:Q8XGC9 (EMBL:AE008717) (152 aa) fasta scores: E(): 8.9e-47, 78.14% id in 151 aa
YP_049264.1	Similar to Escherichia coli multidrug resistance-like ATP-binding protein MdlA or Mdl or b0448 SWALL:MDLA_ECOLI (SWALL:P77265) (590 aa) fasta scores: E(): 2.2e-169, 76.45% id in 582 aa
YP_049265.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 multidrug resistance-like ATP-binding protein mdlb mdlb or mdl or b0449 or c0566 or z0559 or ecs0503 SWALL:MDLB_ECOLI (SWALL:P75706) (593 aa) fasta scores: E(): 1e-165, 74.61% id in 583 aa
YP_049266.1	indirectly regulates nitrogen metabolism; at high nitrogen levels P-II 2 prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II 2 is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA; functionally it is equivalent to protein P-II (GlnB), but itsexpression is driven by the presence of uridylyltransferase, nitrogen regulator I, and the absence of ammonia.
YP_049267.1	Similar to Escherichia coli, and Escherichia coli O157:H7 probable ammonium transporter AmtB or b0451 or z0563 or ecs0505 SWALL:AMTB_ECOLI (SWALL:P37905) (428 aa) fasta scores: E(): 4.1e-125, 76.11% id in 427 aa
YP_049268.1	Similar to Escherichia coli, and Escherichia coli O157:H7 acyl-coa thioesterase II TesB or b0452 or z0564 or ecs0506 SWALL:TESB_ECOLI (SWALL:P23911) (285 aa) fasta scores: E(): 4.3e-85, 73.75% id in 282 aa
YP_049269.1	Similar to Salmonella typhimurium glycoprotein/polysaccharide metabolism ybay or stm0465 SWALL:Q8ZRB1 (EMBL:AE008717) (189 aa) fasta scores: E(): 4e-30, 50.78% id in 191 aa, and to Salmonella typhi hypothetical lipoprotein Sty0509 sty0509 SWALL:Q8Z8U2 (EMBL:AL627266) (189 aa) fasta scores: E(): 6.1e-30, 50.26% id in 189 aa
YP_049270.1	Similar to Yersinia pestis  6-O-methylguanine DNA methyltransferase family protein ypo3139 or y1045 SWALL:Q8ZC83 (EMBL:AJ414155) (181 aa) fasta scores: E(): 3.1e-26, 72% id in 100 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ybaz ybaz or b0454 or sf0400 SWALL:YBAZ_ECOLI (SWALL:P75707) (129 aa) fasta scores: E(): 4.7e-24, 65.68% id in 102 aa
YP_049271.1	with Hns involved in transcriptional regulation of hemolysin; non-specific DNA-binding protein which affects the production of multiple proteins
YP_049272.1	Similar to Yersinia pestis hypothetical protein ypo3137 or y1047 SWALL:Q8ZC84 (EMBL:AJ414155) (122 aa) fasta scores: E(): 8.8e-36, 74.59% id in 122 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybaj or b0461 or c0579 or z0574 or ecs0514 SWALL:YBAJ_ECOLI (SWALL:P37611) (124 aa) fasta scores: E(): 1.4e-26, 60.83% id in 120 aa
YP_049273.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif
YP_049274.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_049275.1	Similar to Escherichia coli acriflavine resistance protein B AcrB or AcrE or b0462 SWALL:ACRB_ECOLI (SWALL:P31224) (1049 aa) fasta scores: E(): 0, 80.84% id in 1039 aa
YP_049276.1	Similar to Escherichia coli, and Escherichia coli O157:H7 acriflavine resistance protein a precursor AcrA or MtcA or Lir or b0463 or z0578 or ecs0516 SWALL:ACRA_ECOLI (SWALL:P31223) (397 aa) fasta scores: E(): 4e-103, 72.29% id in 397 aa
YP_049277.1	regulates the acrAB operon which is involved in susceptibility to dephalothin and cephaloridine
YP_049278.1	Similar to Yersinia pestis hypothetical protein Ypo3128 SWALL:Q8ZC92 (EMBL:AJ414155) (51 aa) fasta scores: E(): 2e-09, 60.78% id in 51 aa, and to Escherichia coli O6 hypothetical protein ybam or c0585 SWALL:AAN79063 (EMBL:AE016756) (53 aa) fasta scores: E(): 6e-09, 62.26% id in 53 aa
YP_049279.1	Similar to Escherichia coli primosomal replication protein N'' PriC or b0467 SWALL:PRIC_ECOLI (SWALL:P23862) (174 aa) fasta scores: E(): 1.2e-14, 40.11% id in 172 aa
YP_049280.1	Similar to Yersinia pestis  gene 58 y1058 SWALL:AAM84639 (EMBL:AE013709) (126 aa) fasta scores: E(): 6.6e-40, 77.23% id in 123 aa, and to Salmonella typhimurium, and Salmonella typhi  phage gene 58 yban or stm0482 or sty0526 SWALL:Q8XGD2 (EMBL:AE008718) (125 aa) fasta scores: E(): 3.2e-38, 73.17% id in 123 aa
YP_049281.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_049282.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_049283.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri hypothetical protein ybab SWALL:YBAB_ECOLI (SWALL:P17577) (109 aa) fasta scores: E(): 5.8e-35, 91.74% id in 109 aa, and to Yersinia pestis hypothetical protein ypo3121/y1061 ypo3121 or y1061 SWALL:YV21_YERPE (SWALL:Q8ZC96) (110 aa) fasta scores: E(): 4.2e-34, 92.72% id in 110 aa
YP_049284.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_049285.1	molecular chaperone
YP_049286.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_049287.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_049288.1	YbaL; member of the CPA-2 family of antiporters; uncharacterized protein
YP_049289.1	Doubtful CDS. No significant database matches
YP_049290.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_049291.1	no significant database matches
YP_049292.1	no significant database matches
YP_049293.1	Similar to Escherichia coli O157:H7  carbon starvation protein yjiy or z5953 or ecs5313 SWALL:Q8XB65 (EMBL:AE005666) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa, and to Shigella flexneri  carbon starvation protein yjiy or sf4372 SWALL:AAN45788 (EMBL:AE015443) (721 aa) fasta scores: E(): 0, 87.44% id in 717 aa
YP_049294.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjix or b4353 or c5428 or z5952 or ecs5312 or sf4371 SWALL:YJIX_ECOLI (SWALL:P39395) (67 aa) fasta scores: E(): 4.2e-23, 83.58% id in 67 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yjix or stm4531 or sty4889 SWALL:Q8XF65 (EMBL:AE008913) (67 aa) fasta scores: E(): 1.1e-22, 83.58% id in 67 aa
YP_049295.1	Similar to Escherichia coli hypothetical protein yjia or b4352 SWALL:YJIA_ECOLI (SWALL:P24203) (318 aa) fasta scores: E(): 1e-81, 67.93% id in 315 aa, and to Salmonella typhimurium  cobalamin synthesis protein yjia or stm4530 SWALL:Q8ZJY6 (EMBL:AE008913) (318 aa) fasta scores: E(): 3.6e-81, 68.88% id in 315 aa
YP_049296.1	Similar to Erwinia chrysanthemi  polygalacturonase precursor PehN SWALL:Q8KKH7 (EMBL:AJ292044) (457 aa) fasta scores: E(): 9.4e-151, 80.13% id in 458 aa
YP_049297.1	Similar to Salmonella typhi hypothetical protein Sty0541 SWALL:Q8Z8S7 (EMBL:AL627267) (159 aa) fasta scores: E(): 2.5e-43, 75.47% id in 159 aa, and to Escherichia coli O6 protein ybak or c0601 SWALL:AAN79079 (EMBL:AE016756) (159 aa) fasta scores: E(): 3e-42, 72.95% id in 159 aa
YP_049298.1	Similar to Yersinia pestis hypothetical protein ypo3087 or y1091 SWALL:AAM84669 (EMBL:AJ414155) (269 aa) fasta scores: E(): 1.1e-62, 62.87% id in 264 aa, and to Escherichia coli O6 hypothetical protein ybap or c0602 SWALL:AAN79080 (EMBL:AE016756) (264 aa) fasta scores: E(): 6.8e-51, 52.49% id in 261 aa
YP_049299.1	Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa
YP_049300.1	Similar to Escherichia coli, and Shigella flexneri transcriptional regulator CueR or b0487 or sf0432 SWALL:CUER_ECOLI (SWALL:P77565) (135 aa) fasta scores: E(): 8.4e-34, 72.51% id in 131 aa
YP_049301.1	Similar to Yersinia pestis  membrane protein ypo3084 or y1095 SWALL:Q8ZCA9 (EMBL:AJ414155) (149 aa) fasta scores: E(): 2.4e-35, 60% id in 150 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ybbj or b0488 or sf0433 SWALL:YBBJ_ECOLI (SWALL:P75709) (151 aa) fasta scores: E(): 2e-34, 59.73% id in 149 aa
YP_049302.1	Similar to Yersinia pestis hypothetical protein ypo3083 or y1096 SWALL:Q8ZCB0 (EMBL:AJ414155) (304 aa) fasta scores: E(): 3.7e-94, 90.13% id in 304 aa, and to Salmonella typhimurium  inner membrane protein ybbk or stm0501 SWALL:Q8ZR94 (EMBL:AE008719) (305 aa) fasta scores: E(): 2.8e-90, 86.09% id in 302 aa
YP_049303.1	plays a role in maintenance and possibly the biosynthesis of diferric-tyrosyl radical cofactor, essential for nucleotide reduction catalyzed by ribonucleotide reductases
YP_049304.1	B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA
YP_049305.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_049306.1	Involved in ubiquinone biosynthesis
YP_049307.1	negatively supercoils closed circular double-stranded DNA
YP_049308.1	Similar to Escherichia coli sensor protein RcsC or b2218 SWALL:RCSC_ECOLI (SWALL:P14376) (949 aa) fasta scores: E(): 1.6e-216, 58.97% id in 953 aa
YP_049309.1	two-component response regulator RscB regulates the genes involved in capsule biosynthesis and cell division; probably phosphorylated by RcsC or RcsF
YP_049310.1	Similar to Salmonella typhimurium  sensor/kinase in regulatory system yojn or stm2269 SWALL:Q8ZNH2 (EMBL:AE008801) (889 aa) fasta scores: E(): 2.3e-141, 45.11% id in 891 aa
YP_049311.1	Similar to Yersinia pestis  membrane protein ypo1221 or y2967 SWALL:Q8ZGR2 (EMBL:AJ414147) (384 aa) fasta scores: E(): 1.1e-95, 69.16% id in 373 aa, and to Bradyrhizobium japonicum Blr6253 protein blr6253 SWALL:BAC51518 (EMBL:AP005957) (436 aa) fasta scores: E(): 8.5e-59, 47.76% id in 381 aa
YP_049312.1	Similar to Agrobacterium tumefaciens hypothetical protein atu0863 atu0863 or agr_c_1578 SWALL:Q8UH22 (EMBL:AE009052) (143 aa) fasta scores: E(): 7e-27, 61.11% id in 126 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll5105 SWALL:BAC50370 (EMBL:AP005953) (140 aa) fasta scores: E(): 9.7e-16, 50.47% id in 105 aa
YP_049313.1	Similar to Rhizobium meliloti  sdr family dehydrogenase protein rb0962 or smb21384 SWALL:Q92UX3 (EMBL:AL603645) (247 aa) fasta scores: E(): 3e-56, 64.75% id in 244 aa, and to Agrobacterium tumefaciens oxidoreductase atu0864 or agr_c_1580 SWALL:Q8UH21 (EMBL:AE009052) (252 aa) fasta scores: E(): 2.7e-38, 48.38% id in 248 aa
YP_049314.1	Similar to Rhizobium meliloti  sdr family dehydrogenase protein rb0961 or smb21383 SWALL:Q92UX4 (EMBL:AL603645) (296 aa) fasta scores: E(): 7.1e-51, 57.04% id in 291 aa, and to Xanthomonas axonopodis short chain dehydrogenase xac0083 SWALL:Q8PR80 (EMBL:AE011631) (245 aa) fasta scores: E(): 1.4e-40, 55.83% id in 240 aa
YP_049315.1	Similar to Rhizobium meliloti  sdr family dehydrogenase protein rb0961 or smb21383 SWALL:Q92UX4 (EMBL:AL603645) (296 aa) fasta scores: E(): 1e-56, 60.87% id in 299 aa, and to Xanthomonas axonopodis short chain dehydrogenase xac0083 SWALL:Q8PR80 (EMBL:AE011631) (245 aa) fasta scores: E(): 2.6e-45, 57.5% id in 240 aa
YP_049316.1	synthesizes isochorismate acid from chorismate
YP_049317.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_049318.1	catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA
YP_049319.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_049320.1	catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate
YP_049321.1	Similar to Escherichia coli O-succinylbenzoic acid--CoA ligase MenE or b2260 SWALL:MENE_ECOLI (SWALL:P37353) (451 aa) fasta scores: E(): 1.5e-76, 53.43% id in 466 aa
YP_049322.1	Partial CDS. Similar to the N-terminal regions of several catalases including Proteus mirabilis catalase KatA SWALL:CATA_PROMI (SWALL:P42321) (484 aa) fasta scores: E(): 0.072, 40.38% id in 52 aa, and to Yersinia pestis catalase KatA or ypo1207 or KatE or y2981 SWALL:Q8ZGS4 (EMBL:AJ414147) (480 aa) fasta scores: E(): 0.013, 42.3% id in 52 aa
YP_049323.1	Similar to Yersinia pestis hypothetical protein y2980 SWALL:Q8D012 (EMBL:AE013899) (180 aa) fasta scores: E(): 9.3e-31, 47.77% id in 180 aa, and to Escherichia coli hypothetical protein yfaz precursor yfaz or b2250 SWALL:YFAZ_ECOLI (SWALL:P76471) (180 aa) fasta scores: E(): 4.1e-29, 46.11% id in 180 aa
YP_049324.1	Similar to Escherichia coli, and Shigella flexneri tyrosine-specific transport protein TyrP or b1907 or sf1953 SWALL:TYRP_ECOLI (SWALL:P18199) (403 aa) fasta scores: E(): 3.6e-112, 73.13% id in 402 aa
YP_049325.1	Similar to Yersinia pestis hypothetical protein ypo1210 or y2978 SWALL:AAM86529 (EMBL:AJ414147) (397 aa) fasta scores: E(): 2.8e-102, 67.83% id in 398 aa, and to Escherichia coli O6 cina-like protein c2791 SWALL:AAN81245 (EMBL:AE016763) (400 aa) fasta scores: E(): 1.5e-95, 63.5% id in 400 aa
YP_049326.1	Similar to Yersinia pestis  thioredoxin ypo3082 or y1097 SWALL:Q8ZCB1 (EMBL:AJ414155) (289 aa) fasta scores: E(): 1e-69, 71.93% id in 285 aa, and to Escherichia coli hypothetical protein ybbn or b0492 SWALL:YBBN_ECOLI (SWALL:P77395) (284 aa) fasta scores: E(): 3.8e-68, 70.96% id in 279 aa
YP_049327.1	Similar to Yersinia pestis probable short-chain dehydrogenase ypo3081 or y1098 SWALL:Q8ZCB2 (EMBL:AJ414155) (258 aa) fasta scores: E(): 5.7e-78, 81.64% id in 256 aa, and to Salmonella typhimurium, and Salmonella typhi  oxidoreductase ybbo or stm0505 or sty0551 SWALL:Q8XGS4 (EMBL:AE008719) (256 aa) fasta scores: E(): 2.2e-67, 68.23% id in 255 aa
YP_049328.1	Similar to Escherichia coli, and Escherichia coli O6 acyl-CoA thioesterase I precursor TesA or ApeA or PldC or b0494 or c0615 SWALL:TESA_ECOLI (SWALL:P29679) (208 aa) fasta scores: E(): 7e-57, 67.4% id in 227 aa
YP_049329.1	Similar to Yersinia pestis  ABC transporter ATP-binding protein ypo3079 or y1100 SWALL:Q8ZCB4 (EMBL:AJ414155) (228 aa) fasta scores: E(): 1.2e-52, 81.35% id in 177 aa, and to Salmonella typhimurium, and Salmonella typhi  ABC superfamily ybba or stm0507 or sty0553 SWALL:Q8XFS8 (EMBL:AE008719) (228 aa) fasta scores: E(): 3.2e-49, 76.27% id in 177 aa
YP_049330.1	Similar to Yersinia pestis  permease ypo3078 SWALL:Q8ZCB5 (EMBL:AJ414155) (809 aa) fasta scores: E(): 0, 75.24% id in 808 aa, and to Escherichia coli hypothetical protein ybbp or b0496 SWALL:YBBP_ECOLI (SWALL:P77504) (804 aa) fasta scores: E(): 0, 69.87% id in 810 aa
YP_049331.1	involved in hydrogen uptake
YP_049332.1	Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2
YP_049333.1	HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits
YP_049334.1	involved in hydrogen uptake
YP_049335.2	protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC)
YP_049336.1	Similar to Escherichia coli, and Escherichia coli O6 hydrogenase-2 operon protein HybE or b2992 or c3729 SWALL:HYBE_ECOLI (SWALL:P37183) (162 aa) fasta scores: E(): 1.3e-27, 48.05% id in 154 aa
YP_049337.1	Similar to Escherichia coli hydrogenase isoenzymes formation protein HypE or b2730 SWALL:HYPE_ECOLI (SWALL:P24193) (322 aa) fasta scores: E(): 1.7e-97, 78.88% id in 322 aa
YP_049338.1	Similar to Escherichia coli hydrogenase isoenzymes formation protein HypD or b2729 SWALL:HYPD_ECOLI (SWALL:P24192) (373 aa) fasta scores: E(): 2.4e-119, 76.55% id in 371 aa
YP_049339.1	HypC; accessory protein necessary for maturation of the hydrogenase isoforms 1, 2 and 3; forms a complex with HypD, HypE, and HypF proteins, which is the site of ligand biosynthesis and attachment to the iron atom of the NiFe site in the hydrogenase
YP_049340.1	GTP hydrolase involved in nickel liganding into hydrogenases
YP_049341.1	plays a role in hydrogenase nickel cofactor insertion
YP_049342.1	Similar to Escherichia coli hydrogenase-4 transcriptional activator HyfR or b2491 SWALL:HYFR_ECOLI (SWALL:P71229) (670 aa) fasta scores: E(): 2e-110, 50.07% id in 655 aa
YP_049343.1	involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE
YP_049344.1	Similar to Escherichia coli hydrogenase-4 component J HyfJ or b2490 SWALL:HYFJ_ECOLI (SWALL:P77453) (137 aa) fasta scores: E(): 2.4e-23, 50% id in 136 aa
YP_049345.1	Similar to Escherichia coli hydrogenase-4 component I HyfI or b2489 SWALL:HYFI_ECOLI (SWALL:P77668) (252 aa) fasta scores: E(): 5.7e-68, 72.06% id in 247 aa
YP_049346.1	probable electron transfer protein for hydrogenase 4; hydrogenase 4 is believed to be silent in E. coli under conditions tested so far
YP_049347.1	Similar to Escherichia coli hydrogenase-4 component G HyfG or b2487 SWALL:HYFG_ECOLI (SWALL:P77329) (555 aa) fasta scores: E(): 3.1e-128, 78.03% id in 569 aa
YP_049348.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_049349.1	interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide
YP_049350.1	Similar to Escherichia coli hydrogenase-4 component D HyfD or b2484 SWALL:HYFD_ECOLI (SWALL:P77416) (479 aa) fasta scores: E(): 1.2e-133, 72.65% id in 479 aa
YP_049351.1	Similar to Escherichia coli hydrogenase-4 component C HyfC or b2483 SWALL:HYFC_ECOLI (SWALL:P77858) (315 aa) fasta scores: E(): 4.9e-85, 73.35% id in 304 aa
YP_049352.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_049353.1	Similar to Escherichia coli hydrogenase-4 component A HyfA or b2481 SWALL:HYFA_ECOLI (SWALL:P23481) (205 aa) fasta scores: E(): 4.1e-36, 49.75% id in 207 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri formate hydrogenlyase subunit 2 hycb or hevb or b2724 or c3284 or sf2741 SWALL:HYCB_ECOLI (SWALL:P16428) (203 aa) fasta scores: E(): 5.2e-37, 50.24% id in 205 aa
YP_049354.1	no significant database matches
YP_049355.1	involved in electron transport from formate to hydrogen
YP_049356.1	Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 2.2e-193, 64.61% id in 715 aa
YP_049357.1	Similar to Escherichia coli hydrogenase maturation protein HypF or HydA or b2712 SWALL:HYPF_ECOLI (SWALL:P30131) (750 aa) fasta scores: E(): 1.3e-206, 67.71% id in 734 aa
YP_049358.1	Similar to Alcaligenes eutrophus high-affinity nickel transport protein HoxN SWALL:HOXN_ALCEU (SWALL:P23516) (351 aa) fasta scores: E(): 1.2e-68, 54.63% id in 324 aa, and to Bradyrhizobium japonicum hydrogenase nickel incorporation protein HupN or bll6949 SWALL:HUPN_BRAJA (SWALL:Q45247) (381 aa) fasta scores: E(): 1.8e-62, 51.91% id in 314 aa
YP_049359.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_049360.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_049361.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_049362.1	Similar to Escherichia coli, and Escherichia coli O157:H7 uracil permease UraA or b2497 or z3760 or ecs3359 SWALL:URAA_ECOLI (SWALL:P33780) (429 aa) fasta scores: E(): 2.7e-132, 86.85% id in 426 aa
YP_049363.1	controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP
YP_049364.1	Similar to Yersinia pestis  arsenate reductase ypo3070 SWALL:Q8ZCC2 (EMBL:AJ414155) (118 aa) fasta scores: E(): 2.4e-28, 72.8% id in 114 aa, and to Escherichia coli protein yfgd or b2495 SWALL:YFGD_ECOLI (SWALL:P76569) (119 aa) fasta scores: E(): 2.2e-27, 71.05% id in 114 aa
YP_049365.1	Similar to Yersinia pestis hypothetical protein ypo3069/y1412 precursor ypo3069 or y1412 SWALL:YU69_YERPE (SWALL:Q8ZCC3) (486 aa) fasta scores: E(): 4.4e-134, 75.97% id in 487 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yfgc precursor yfgc or b2494 or sf2538 SWALL:YFGC_ECOLI (SWALL:P76568) (487 aa) fasta scores: E(): 7.1e-129, 71.22% id in 483 aa
YP_049366.1	bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine
YP_049367.1	negative transcriptional regulator of the gcvTHP operon
YP_049368.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_049369.1	Similar to Escherichia coli, and Shigella flexneri lipoprotein-34 precursor NlpB or DapX or b2477 or sf2520 SWALL:NLPB_ECOLI (SWALL:P21167) (344 aa) fasta scores: E(): 1.7e-83, 64.05% id in 345 aa
YP_049370.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_049371.1	Similar to Yersinia pestis  membrane protein ypo3057 SWALL:Q8ZCD4 (EMBL:AJ414155) (150 aa) fasta scores: E(): 5.6e-44, 83.33% id in 150 aa, and to Salmonella typhi  membrane protein sty1838 SWALL:Q8Z6E5 (EMBL:AL627271) (148 aa) fasta scores: E(): 1.7e-36, 71.03% id in 145 aa
YP_049372.1	Similar to Yersinia pestis  acetyltransferase ypo3056 or y1424 SWALL:Q8ZCD5 (EMBL:AJ414155) (699 aa) fasta scores: E(): 4e-156, 56.57% id in 677 aa, and to Escherichia coli O157:H7 orf, hypothetical protein ypfi or z3733 or ecs3336 SWALL:Q8XBD6 (EMBL:AE005477) (671 aa) fasta scores: E(): 4.7e-72, 51.68% id in 681 aa
YP_049373.1	The N-terminal region of this CDS is similar to several thioredoxinx including Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1.7e-14, 46.22% id in 106 aa, and to Thiobacillus ferrooxidans thioredoxin trxA SWALL:THIO_THIFE (SWALL:P52233) (108 aa) fasta scores: E(): 2.3e-14, 45.79% id in 107 aa
YP_049374.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri TldD protein or b3244 or c3999 or sf3283 SWALL:TLDD_ECOLI (SWALL:P46473) (481 aa) fasta scores: E(): 6e-95, 54.66% id in 472 aa. Also similar to ECA0273 (55.297% id. in 472 aa overlap)
YP_049375.1	Similar to Escherichia coli, and Escherichia coli O157:H7 PmbA protein PmbA or TldE or b4235 or z5845 or ecs5212 SWALL:PMBA_ECOLI (SWALL:P24231) (450 aa) fasta scores: E(): 1.8e-61, 41.4% id in 442 aa
YP_049376.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri biopolymer transport ExbD protein ExbD or b3005 or c3740 or z4358 or ecs3889 or sf3050 SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 1.3e-08, 34.32% id in 134 aa, and to Neisseria gonorrhoeae biopolymer transport ExbD protein ExbD SWALL:EXBD_NEIGO (SWALL:O06434) (144 aa) fasta scores: E(): 1.6e-12, 39% id in 141 aa
YP_049377.1	Similar to Neisseria meningitidis biopolymer transport ExbB protein WALL:EXBB_NEIMC (SWALL:P95375) (220 aa) fasta scores: E(): 1e-23, 38.42% id in 216 aa, and to Xanthomonas campestris biopolymer transport ExbB protein or xcc0009 SWALL:EXBB_XANCP (SWALL:O34260) (253 aa) fasta scores: E(): 1.8e-24, 39.81% id in 216 aa
YP_049378.1	Similar to Escherichia coli TonB protein TonB or ExbA or b1252 SWALL:TONB_ECOLI (SWALL:P02929) (239 aa) fasta scores: E(): 0.00081, 31.57% id in 247 aa, and to Bordetella pertussis TonB protein SWALL:Q9S3M6 (EMBL:AJ132741) (266 aa) fasta scores: E(): 1.3e-11, 34.55% id in 246 aa
YP_049379.1	Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 2.9e-18, 30.09% id in 309 aa, and to Pseudomonas aeruginosa probable transmembrane sensor pa0471 SWALL:Q9I647 (EMBL:AE004485) (323 aa) fasta scores: E(): 8.9e-27, 32.58% id in 313 aa
YP_049380.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_049381.1	Similar to Anabaena sp. ferrichrome-iron receptor all2610 SWALL:Q8YTV3 (EMBL:AP003590) (857 aa) fasta scores: E(): 3.4e-38, 27.33% id in 684 aa, and to Pseudomonas putida outer membrane ferric siderophore receptor,  pp3155 SWALL:AAN68763 (EMBL:AE016785) (709 aa) fasta scores: E(): 2.2e-29, 27.35% id in 691 aa
YP_049382.1	Similar to Bradyrhizobium japonicum Blr7537 protein SWALL:BAC52802 (EMBL:AP005962) (587 aa) fasta scores: E(): 2e-65, 34.16% id in 562 aa, and to Pasteurella multocida hypothetical protein Pm1072 SWALL:Q9CLX7 (EMBL:AE006148) (585 aa) fasta scores: E(): 4.2e-55, 33.39% id in 548 aa
YP_049383.1	no significant database matches
YP_049384.1	Partial CDS. Similar to the C-terminal regions several proteins including Methanosarcina acetivorans hypothetical protein Ma0995 SWALL:Q8TS12 (EMBL:AE010765) (251 aa) fasta scores: E(): 3.7e-12, 61.29% id in 62 aa, and to Bacillus halodurans hypothetical protein Bh0315 SWALL:Q9KG01 (EMBL:AP001508) (237 aa) fasta scores: E(): 2.9e-08, 49.2% id in 63 aa
YP_049385.1	Similar to Agrobacterium tumefaciens hypothetical protein atu2406 or agr_c_4366 SWALL:Q8UCS7 (EMBL:AE009188) (85 aa) fasta scores: E(): 3.7e-16, 67.12% id in 73 aa, and to Ralstonia solanacearum hypothetical protein rsp1158 or rs05427 SWALL:Q8XQR3 (EMBL:AL646083) (82 aa) fasta scores: E(): 3.6e-15, 62.66% id in 75 aa
YP_049386.1	Displays esterase activity toward palmitoyl-CoA and pNP-butyrate
YP_049387.1	Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 5.4e-83, 51.52% id in 559 aa, and to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 6e-85, 53.86% id in 557 aa
YP_049388.1	Similar to Clostridium acetobutylicum acetyl-CoA acetyltransferase ThlA or Thl or cac2873 SWALL:THLA_CLOAB (SWALL:P45359) (392 aa) fasta scores: E(): 9.5e-81, 59.48% id in 390 aa, and to Escherichia coli acetyl-CoA acetyltransferase AtoB or b2224 SWALL:ATOB_ECOLI (SWALL:P76461) (394 aa) fasta scores: E(): 1.2e-87, 64.01% id in 389 aa
YP_049389.1	Similar to Escherichia coli acetate CoA-transferase beta subunit AtoA or b2222 SWALL:ATOA_ECOLI (SWALL:P76459) (216 aa) fasta scores: E(): 1.4e-54, 70.33% id in 209 aa, and to Clostridium acetobutylicum butyrate-acetoacetate CoA-transferase subunit B CtfB or cap0164 SWALL:CTFB_CLOAB (SWALL:P23673) (221 aa) fasta scores: E(): 2.6e-44, 57.2% id in 215 aa
YP_049390.1	Similar to Escherichia coli acetate CoA-transferase alpha subunit AtoD or b2221 SWALL:ATOD_ECOLI (SWALL:P76458) (220 aa) fasta scores: E(): 3.9e-48, 61.46% id in 218 aa
YP_049391.1	Similar to the C-terminal regions of several hypothetical proteins including Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.9e-06, 37% id in 100 aa, and to Mycobacterium tuberculosis hypothetical protein rv0976c or mtv044.04c or mt1003.1 SWALL:O86320 (EMBL:Z79700) (560 aa) fasta scores: E(): 0.00068, 35.29% id in 85 aa
YP_049392.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.4e-40, 34.88% id in 450 aa, and to Streptomyces coelicolor hypothetical protein sco4379 or scd10.11 SWALL:Q9K3W5 (EMBL:AL939119) (558 aa) fasta scores: E(): 2.3e-21, 34.24% id in 365 aa
YP_049393.1	Similar to Bacillus subtilis Mg(2+)/citrate complex secondary transporter CitM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 7.6e-53, 40.76% id in 444 aa, and to Xylella fastidiosa Mg++/citrate complex transporter xf0320 SWALL:Q9PGI0 (EMBL:AE003885) (457 aa) fasta scores: E(): 1.1e-68, 41.83% id in 447 aa
YP_049394.1	Similar to Pseudomonas putida transcriptional regulator, LysR family pp2054 SWALL:AAN67668 (EMBL:AE016781) (297 aa) fasta scores: E(): 6.5e-28, 33.33% id in 297 aa, and to Escherichia coli hypothetical transcriptional regulator ybhd or b0768 SWALL:YBHD_ECOLI (SWALL:P52696) (317 aa) fasta scores: E(): 1.6e-26, 28.17% id in 291 aa
YP_049395.1	Similar to Yersinia pestis  membrane protein ypo3055 SWALL:Q8ZCD6 (EMBL:AJ414155) (64 aa) fasta scores: E(): 1.4e-19, 73.84% id in 65 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein stm2484 or sty2722 SWALL:Q8XF02 (EMBL:AE008812) (66 aa) fasta scores: E(): 5.5e-17, 66.12% id in 62 aa
YP_049396.1	Similar to Yersinia pestis  carboxypeptidase ypo3054 or y1426 SWALL:Q8ZCD7 (EMBL:AJ414155) (225 aa) fasta scores: E(): 1.8e-65, 68.34% id in 218 aa, and to Pasteurella multocida hypothetical protein Pm1021 SWALL:Q9CM23 (EMBL:AE006143) (228 aa) fasta scores: E(): 8.7e-46, 51.13% id in 221 aa
YP_049397.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_049398.1	Similar to Escherichia coli protein yffb or b2471 SWALL:YFFB_ECOLI (SWALL:P24178) (118 aa) fasta scores: E(): 8e-24, 61.15% id in 121 aa, and to Yersinia pestis hypothetical protein ypo3052 or y1428 SWALL:Q8ZCD9 (EMBL:AJ414155) (132 aa) fasta scores: E(): 1.1e-27, 67.5% id in 120 aa
YP_049399.1	Similar to Yersinia pestis  aspartate/glutamate racemase ypo2758 SWALL:Q8ZD34 (EMBL:AJ414153) (231 aa) fasta scores: E(): 2.5e-58, 67.54% id in 228 aa, and to Salmonella typhi hypothetical protein Sty3159 SWALL:Q8Z402 (EMBL:AL627277) (235 aa) fasta scores: E(): 1.6e-49, 55.89% id in 229 aa
YP_049400.1	member of the CspA family; constitutively expressed RNA/ssDNA-binding protein; functions in helping cells adapt to low temperature; aids nucleic acid melting; participates in gene regulation; can act as a transcription antiterminator
YP_049401.1	Similar to Escherichia coli protein CrcB or b0624 SWALL:CRCB_ECOLI (SWALL:P37002) (127 aa) fasta scores: E(): 1.1e-26, 62.2% id in 127 aa, and to Yersinia pestis protein crcb homolog crcb or ypo2596 or y1168 SWALL:CRCB_YERPE (SWALL:Q8ZDH2) (127 aa) fasta scores: E(): 1.7e-27, 66.11% id in 121 aa
YP_049402.1	TatE; similar to TatA and found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a
YP_049403.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_049404.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_049405.1	Similar to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein ybed or stm0636 or sty0687 SWALL:Q8XGV6 (EMBL:AE008725) (87 aa) fasta scores: E(): 4.9e-27, 88.5% id in 87 aa, and to Yersinia pestis hypothetical protein ypo2600 or y1174 SWALL:Q8ZDG8 (EMBL:AJ414153) (87 aa) fasta scores: E(): 5.8e-27, 85.05% id in 87 aa
YP_049406.1	penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors
YP_049407.1	Similar to Escherichia coli rare lipoprotein A precursor RlpA or b0633 SWALL:RLPA_ECOLI (SWALL:P10100) (362 aa) fasta scores: E(): 8e-52, 50.94% id in 371 aa
YP_049408.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri Rod shape-determining protein roda mrdb or roda or b0634 or z0780 or ecs0672 or sf0647 SWALL:RODA_ECOLI (SWALL:P15035) (370 aa) fasta scores: E(): 8.1e-122, 82.7% id in 370 aa
YP_049409.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 penicillin-binding protein 2 MrdA or PbpA or b0635 or c0726 or z0781 or ecs0673 SWALL:PBP2_ECOLI (SWALL:P08150) (633 aa) fasta scores: E(): 5.9e-203, 79.74% id in 632 aa
YP_049410.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_049411.1	Similar to Salmonella typhimurium, and Salmonella typhi  Acr, homolog of plant IojaP protein ybeb or stm0642 or sty0693 SWALL:Q8XF37 (EMBL:AE008725) (105 aa) fasta scores: E(): 2.7e-33, 83.65% id in 104 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybeb or b0637 or c0728 or sf0644 SWALL:YBEB_ECOLI (SWALL:P05848) (105 aa) fasta scores: E(): 9.2e-33, 82.69% id in 104 aa
YP_049412.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_049413.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_049414.1	rare lipoprotein B; involved in the assembly of LPS in the outer membrane
YP_049415.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_049416.1	Similar to Yersinia pestis hypothetical protein Ypo2611 SWALL:Q8ZDF7 (EMBL:AJ414153) (160 aa) fasta scores: E(): 3.3e-46, 76.87% id in 160 aa, and to Salmonella typhimurium  cytoplasmic protein ybel or stm0653 SWALL:Q8ZQZ2 (EMBL:AE008726) (157 aa) fasta scores: E(): 2.3e-42, 71.25% id in 160 aa
YP_049417.1	Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 4.5e-73, 87.55% id in 241 aa
YP_049418.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamate/aspartate transport system permease protein GltK or b0653 or c0737 or z0803 or ecs0692 SWALL:GLTK_ECOLI (SWALL:P41075) (224 aa) fasta scores: E(): 2.2e-73, 84.75% id in 223 aa
YP_049419.1	Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 5.8e-85, 88.61% id in 246 aa
YP_049420.1	Similar to Escherichia coli glutamate/aspartate periplasmic binding protein precursor HltI or b0655 SWALL:GLTI_ECOLI (SWALL:P37902) (302 aa) fasta scores: E(): 1.5e-88, 78.8% id in 302 aa
YP_049421.1	Transfers the fatty acyl group on membrane lipoproteins
YP_049422.1	Similar to Salmonella typhimurium, and Salmonella typhi magnesium and cobalt efflux protein CorC or stm0667 or sty0712 SWALL:CORC_SALTY (SWALL:Q9R874) (292 aa) fasta scores: E(): 1.5e-92, 85.95% id in 292 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri magnesium and cobalt efflux protein CorC or b0658 or c0743 or z0807 or ecs0696 or sf0624 SWALL:CORC_ECOLI (SWALL:P77392) (292 aa) fasta scores: E(): 2.6e-92, 85.61% id in 292 aa
YP_049423.1	Similar to Yersinia pestis hypothetical protein ypo2618 or y1193 SWALL:YQ18_YERPE (SWALL:Q8ZDF0) (157 aa) fasta scores: E(): 5.2e-49, 80.64% id in 155 aa, and to Salmonella typhi hypothetical protein ybey or sty0714 SWALL:YBEY_SALTI (SWALL:Q8Z8G6) (157 aa) fasta scores: E(): 2.1e-48, 79.87% id in 154 aa
YP_049424.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PhoH-like protein ybez or b0660 or c0745 or z0809 or ecs0698 or sf0622 SWALL:PHOL_ECOLI (SWALL:P77349) (359 aa) fasta scores: E(): 3.2e-109, 88.92% id in 343 aa, and to Yersinia pestis hypothetical protein ypo2619 or y1194 SWALL:AAM84771 (EMBL:AJ414153) (370 aa) fasta scores: E(): 8.5e-110, 88.33% id in 343 aa
YP_049425.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ylea or b0661 or c0747 or z0810 or ecs0699 SWALL:YLEA_ECOLI (SWALL:P77645) (474 aa) fasta scores: E(): 2.5e-163, 86.28% id in 474 aa, and to Salmonella typhimurium miab protein miab or stm0670 SWALL:Q9RCI2 (EMBL:AJ249116) (474 aa) fasta scores: E(): 7.8e-163, 86.07% id in 474 aa
YP_049426.1	catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q
YP_049427.1	Weakly similar to Vibrio vulnificus hypothetical protein vv12006 SWALL:AAO10403 (EMBL:AE016803) (381 aa) fasta scores: E(): 1.9, 23.52% id in 170 aa
YP_049428.1	no significant database matches
YP_049429.1	functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP
YP_049430.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri N-acetylglucosamine repressor NagC or NagR or b0676 or c0751 or z0823 or ecs0706 or sf0617 SWALL:NAGC_ECOLI (SWALL:P15301) (406 aa) fasta scores: E(): 7.3e-114, 74.87% id in 406 aa
YP_049431.1	catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate
YP_049432.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_049433.1	Similar to Escherichia coli PTS system, N-acetylglucosamine-specific IIABC component NagE or pPstN or b0679 SWALL:PTAA_ECOLI (SWALL:P09323) (648 aa) fasta scores: E(): 7.8e-62, 45.16% id in 496 aa
YP_049434.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_049435.1	negatively regulates a number of operons that encode enzymes involved in iron transport; activated by manganese; forms a homodimer
YP_049436.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_049437.1	no significant database matches
YP_049438.1	Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 6.3e-68, 46.49% id in 570 aa
YP_049439.1	Similar to Yersinia pestis hypothetical protein ypo2637 or y1211 SWALL:AAM84787 (EMBL:AJ414153) (95 aa) fasta scores: E(): 2e-28, 92.39% id in 92 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ybfe or b0685 or z0834 or ecs0716 or sf0608 SWALL:YBFE_ECOLI (SWALL:P75735) (120 aa) fasta scores: E(): 5.4e-25, 81.72% id in 93 aa
YP_049440.1	Similar to Escherichia coli  esterase/lipase ybff or b0686 SWALL:YBFF_ECOLI (SWALL:P75736) (254 aa) fasta scores: E(): 5.2e-69, 67.58% id in 253 aa
YP_049441.1	negative modulator of the initiation of chromosome replication
YP_049442.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_049443.1	Similar to Yersinia pestis  membrane protein ypo2687 or y1260 SWALL:Q8ZDA1 (EMBL:AJ414153) (142 aa) fasta scores: E(): 2.3e-37, 80.28% id in 142 aa, and to Pyrococcus abyssi hypothetical protein pyrab09950 or pab0665 SWALL:Q9V003 (EMBL:AJ248286) (137 aa) fasta scores: E(): 3.6e-20, 52.48% id in 141 aa
YP_049444.1	response regulator in two-component regulatory system with KdpD; regulates the kdp operon involved in potassium transport
YP_049445.1	sensory histidine kinase in two-component regulatory system with KdpE; signal sensing protein
YP_049446.1	Similar to Escherichia coli potassium-transporting ATPase c chain KdpC or b0696 SWALL:ATKC_ECOLI (SWALL:P03961) (190 aa) fasta scores: E(): 3.1e-32, 55.08% id in 187 aa
YP_049447.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_049448.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_049449.1	Similar to Escherichia coli O6 hypothetical protein c0784 SWALL:AAN79257 (EMBL:AE016757) (67 aa) fasta scores: E(): 4.9e-06, 52.38% id in 63 aa, and to Staphylococcus aureus  membrane protein SWALL:O87363 (EMBL:AF051917) (77 aa) fasta scores: E(): 2.9, 28.37% id in 74 aa
YP_049450.1	Similar to Yersinia pestis  membrane protein ypo2693 SWALL:Q8ZD95 (EMBL:AJ414153) (68 aa) fasta scores: E(): 4.2e-22, 73.52% id in 68 aa, and to Salmonella typhimurium  periplasmic protein ybfa or stm0708 SWALL:Q8ZQV9 (EMBL:AE008728) (68 aa) fasta scores: E(): 3.2e-20, 72.05% id in 68 aa
YP_049451.1	Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SWALL:AFUB_ACTPL (SWALL:Q44123) (687 aa) fasta scores: E(): 2e-26, 24.36% id in 550 aa, and to Pasteurella multocida AfuB afub_2 or pm1455 SWALL:Q9CKZ5 (EMBL:AE006182) (564 aa) fasta scores: E(): 5.6e-41, 28.39% id in 553 aa
YP_049452.1	Similar to Rhizobium meliloti  periplasmic iron-binding protein AfuA or r02056 or smc04317 SWALL:Q9Z3S7 (EMBL:AF030523) (326 aa) fasta scores: E(): 2e-23, 33.12% id in 326 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 8.6e-22, 30.93% id in 320 aa
YP_049453.1	Similar to Synechococcus elongatus ABC transporter ATP-binding protein tll1492 SWALL:BAC09044 (EMBL:AP005374) (373 aa) fasta scores: E(): 5.2e-35, 50.21% id in 233 aa, and to Bradyrhizobium japonicum ABC transporter ATP-binding protein bll7196 SWALL:BAC52461 (EMBL:AP005961) (365 aa) fasta scores: E(): 7.6e-35, 47.52% id in 242 aa
YP_049454.1	Similar to Salmonella typhi  pathogenicity island protein sty1731 SWALL:Q8Z6K7 (EMBL:AL627271) (319 aa) fasta scores: E(): 2.5e-75, 58.9% id in 309 aa, and to Salmonella typhimurium orf 319 protein orf319 or stm1389 SWALL:Q9Z4T2 (EMBL:AJ224978) (319 aa) fasta scores: E(): 2.5e-75, 58.9% id in 309 aa
YP_049455.1	UV-induced DNA repair; converts cyclobutane-type pyrimidine dimers created during exposure to UV ratiation to monomers; light dependent
YP_049456.1	Similar to Yersinia pestis hypothetical protein ypo2697 or y1272 SWALL:YQ97_YERPE (SWALL:Q8ZD91) (247 aa) fasta scores: E(): 1.6e-77, 76.92% id in 247 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein ybgi or stm0711 or sty0751 SWALL:YBGI_SALTY (SWALL:Q8XFW7) (247 aa) fasta scores: E(): 1.1e-71, 72.06% id in 247 aa
YP_049457.1	Similar to Salmonella typhimurium  carboxylase ybgj or stm0712 SWALL:Q8ZQV8 (EMBL:AE008729) (218 aa) fasta scores: E(): 1.1e-61, 72.93% id in 218 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ybgj or b0711 or z0862 or ecs0736 SWALL:YBGJ_ECOLI (SWALL:P75744) (218 aa) fasta scores: E(): 2.3e-60, 71.56% id in 218 aa
YP_049458.1	Similar to Yersinia pestis hypothetical protein ypo2699 ypo2699 or y1275 SWALL:AAM84849 (EMBL:AJ414153) (316 aa) fasta scores: E(): 3.6e-83, 69.13% id in 311 aa, and to Escherichia coli hypothetical protein ybgk ybgk or b0712 SWALL:YBGK_ECOLI (SWALL:P75745) (310 aa) fasta scores: E(): 2.6e-79, 64.21% id in 313 aa
YP_049459.1	Similar to Yersinia pestis hypothetical protein Ypo2700 SWALL:Q8ZD89 (EMBL:AJ414153) (245 aa) fasta scores: E(): 8e-68, 73.77% id in 244 aa, and to Shigella flexneri  lactam utilization protein ybgl or sf0584 SWALL:AAN42227 (EMBL:AE015089) (244 aa) fasta scores: E(): 1e-59, 66.8% id in 244 aa
YP_049460.1	Similar to Pseudomonas fluorescens pyrrolidone-carboxylate peptidase Pcp SWALL:PCP_PSEFL (SWALL:P42673) (213 aa) fasta scores: E(): 3.4e-37, 53.99% id in 213 aa, and to Bacillus amyloliquefaciens pyrrolidone-carboxylate peptidase Pcp SWALL:PCP_BACAM (SWALL:P46107) (215 aa) fasta scores: E(): 2.6e-36, 48.13% id in 214 aa
YP_049461.1	5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity
YP_049462.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_049463.1	Similar to Escherichia coli, and Escherichia coli O157:H7 succinate dehydrogenase cytochrome b-556 subunit SdhC or CybA or b0721 or z0875 or ecs0746 SWALL:DHSC_ECOLI (SWALL:P10446) (129 aa) fasta scores: E(): 1.1e-38, 79.06% id in 129 aa
YP_049464.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri succinate dehydrogenase hydrophobic membrane anchor protein SdhD or b0722 or c0800 or sf0575 SWALL:DHSD_ECOLI (SWALL:P10445) (115 aa) fasta scores: E(): 2.2e-34, 77.19% id in 114 aa
YP_049465.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_049466.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_049467.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_049468.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_049469.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_049470.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_049471.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 2.3e-178, 83.9% id in 522 aa
YP_049472.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 4.4e-123, 80.21% id in 379 aa
YP_049473.1	Similar to Erwinia chrysanthemi YbgT protein SWALL:Q937K9 (EMBL:AJ297885) (38 aa) fasta scores: E(): 3.5e-11, 76.31% id in 38 aa, and to Escherichia coli protein YbgT or b0734.1 SWALL:YBGT_ECOLI (SWALL:P56100) (37 aa) fasta scores: E(): 2.5e-10, 75% id in 36 aa
YP_049474.1	Similar to Erwinia chrysanthemi YbgE protein SWALL:Q937K8 (EMBL:AJ297885) (97 aa) fasta scores: E(): 1.7e-31, 79.16% id in 96 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein YbgE or b0735 or c0814 or z0903 or ecs0770 or sf0562 SWALL:YBGE_ECOLI (SWALL:P37343) (97 aa) fasta scores: E(): 4.2e-26, 63.54% id in 96 aa
YP_049475.1	catalyzes the hydrolysis of short chain aliphatic acyl-CoA thioesters; physiological role remains unknown; involved in phospholipid metabolism; part of the Tol/Pal system of proteins that are critical for maintaining the integrity of the cell envelope components
YP_049476.1	membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins
YP_049477.1	membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins
YP_049478.1	inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins
YP_049479.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_049480.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri peptidoglycan-associated lipoprotein precursor pal or excc or b0741 or z0909 or ecs0776 or sf0556 SWALL:PAL_ECOLI (SWALL:P07176) (173 aa) fasta scores: E(): 3.1e-50, 81.5% id in 173 aa
YP_049481.1	periplasmic protein that interacts with TolA; the tol-pal system is probably involved in maintaining cell envelope integrity
YP_049482.1	Similar to Shigella flexneri  transport protein yqga or sf2963 SWALL:AAN44444 (EMBL:AE015309) (235 aa) fasta scores: E(): 1.5e-36, 45.79% id in 238 aa, and to Escherichia coli hypothetical protein yqga or b2966 SWALL:YQGA_ECOLI (SWALL:Q46831) (235 aa) fasta scores: E(): 2.3e-36, 45.79% id in 238 aa
YP_049483.1	Similar to Escherichia coli hypothetical protein yjaa or b4011 SWALL:YJAA_ECOLI (SWALL:P09162) (127 aa) fasta scores: E(): 2.2e-05, 28.57% id in 126 aa, and to Yersinia pestis  membrane protein ypo0760 or y3434 SWALL:AAM86983 (EMBL:AJ414144) (137 aa) fasta scores: E(): 0.00023, 32.79% id in 125 aa
YP_049484.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_049485.1	Similar to Escherichia coli, and Shigella flexneri protein PnuC or b0751 or sf0553 SWALL:PNUC_ECOLI (SWALL:P31215) (239 aa) fasta scores: E(): 2.9e-72, 73.64% id in 239 aa, and to Salmonella typhimurium protein PnuC or stm0757 SWALL:PNUC_SALTY (SWALL:P24520) (239 aa) fasta scores: E(): 3e-74, 76.05% id in 238 aa
YP_049486.1	involved in zinc efflux across the cytoplasmic membrane
YP_049487.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_049488.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_049489.1	Similar to Escherichia coli  cation efflux system protein CusA or b0575 SWALL:CUSA_ECOLI (SWALL:P38054) (1047 aa) fasta scores: E(): 0, 65.54% id in 1042 aa
YP_049490.1	Similar to Escherichia coli  copper efflux system protein CusB precursor CusB or b0574 SWALL:CUSB_ECOLI (SWALL:P77239) (407 aa) fasta scores: E(): 8.2e-44, 37.94% id in 398 aa
YP_049491.1	Similar to Alcaligenes eutrophus nickel and cobalt resistance protein CnrC precursor SWALL:CNRC_ALCEU (SWALL:P37974) (418 aa) fasta scores: E(): 1.4e-05, 23.51% id in 404 aa, and to Pseudomonas putida heavy metal Rnd efflux outer membrane protein, czcc family pp5385 SWALL:AAN70950 (EMBL:AE016794) (417 aa) fasta scores: E(): 1.5e-28, 32.61% id in 417 aa
YP_049492.1	Similar to Escherichia coli hypothetical protein CusX precursor CusX or b0573 SWALL:CUSX_ECOLI (SWALL:P77214) (110 aa) fasta scores: E(): 1.5e-06, 35.13% id in 111 aa, and to Shigella flexneri orf, conserved hypothetical protein ylcc or sf0474 SWALL:AAN42127 (EMBL:AE015079) (110 aa) fasta scores: E(): 1.5e-06, 35.13% id in 111 aa
YP_049493.1	Similar to Ralstonia solanacearum hypothetical transmembrane protein rsp0925 or rs05408 SWALL:Q8XRD3 (EMBL:AL646081) (136 aa) fasta scores: E(): 0.11, 26.57% id in 143 aa
YP_049494.1	catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose
YP_049495.1	Similar to Escherichia coli udp-glucose 4-epimerase GalE or GalD or b0759 SWALL:GALE_ECOLI (SWALL:P09147) (338 aa) fasta scores: E(): 5.5e-102, 76.03% id in 338 aa
YP_049496.1	contains 2 ATP-binding cassettes; involved in the transport of molybdenum
YP_049497.1	represses the modABCD operon and activates the moaABCD and napFDAGHBC operons
YP_049498.1	no significant database matches
YP_049499.1	with ModCB is involved in the high-affinity transport of molybdate
YP_049500.1	part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE
YP_049501.1	Part of the ABC transporter complex modABC involved in molybdenum import
YP_049502.1	Similar to Agrobacterium tumefaciens hypothetical protein atu4376 or agr_l_982 SWALL:Q8U7S3 (EMBL:AE009366) (284 aa) fasta scores: E(): 2e-44, 43.5% id in 285 aa, and to Rhizobium meliloti hypothetical protein r01924 or smc04254 SWALL:Q92P69 (EMBL:AL591788) (253 aa) fasta scores: E(): 6.9e-22, 32.63% id in 239 aa
YP_049503.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribose operon repressor RbsR or b3753 or c4681 or z5254 or ecs4695 or sf3836 SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 6.6e-29, 32.82% id in 329 aa, and to Thermoanaerobacter tengcongensis transcriptional regulator PurR8 or tte1952 SWALL:Q8R8P3 (EMBL:AE013146) (331 aa) fasta scores: E(): 1.5e-43, 41.28% id in 327 aa
YP_049504.1	Similar to Bacillus halodurans hypothetical protein Bh0710 bh0710 SWALL:Q9KEY9 (EMBL:AP001509) (388 aa) fasta scores: E(): 9e-27, 28.78% id in 396 aa, and to Streptomyces coelicolor  oxidoreductase sco6988 or sc8f11.14C SWALL:Q9KZG4 (EMBL:AL939129) (387 aa) fasta scores: E(): 1e-20, 29.23% id in 390 aa
YP_049505.1	Similar to Agrobacterium tumefaciens hypothetical protein atu4374 or agr_l_986 SWALL:Q8U7S5 (EMBL:AE009366) (349 aa) fasta scores: E(): 4.3e-104, 67.42% id in 350 aa, and to Caulobacter crescentus hypothetical protein Cc1631 SWALL:Q9A7T9 (EMBL:AE005838) (351 aa) fasta scores: E(): 5.1e-102, 68.09% id in 351 aa
YP_049506.1	Similar to Escherichia coli  nucleoside transporter YegT or b2098 SWALL:YEGT_ECOLI (SWALL:P76417) (425 aa) fasta scores: E(): 7e-56, 38.47% id in 408 aa, and to Salmonella typhimurium, and Salmonella typhi  mfs family transport protein YegT or stm2142 or sty2371 SWALL:Q8XEM8 (EMBL:AE008795) (423 aa) fasta scores: E(): 1.1e-55, 39.11% id in 409 aa
YP_049507.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_049508.1	YbhA; catalyzes the dephosphorylation of pyridoxal phosphate, fructose 1,6-bisphosphate, erythrose 4-phosphate and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; phosphotransferase activity observed when using monophosphates as phosphate donor; member of the haloacid dehalogenase-like hydrolases superfamily
YP_049509.1	catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate
YP_049510.1	Similar to Yersinia pestis hypothetical protein ypo1516 or y2652 SWALL:Q8ZG04 (EMBL:AJ414148) (418 aa) fasta scores: E(): 7e-158, 89.53% id in 411 aa, and to Bradyrhizobium japonicum Bll5694 protein bll5694 SWALL:BAC50959 (EMBL:AP005955) (441 aa) fasta scores: E(): 1e-80, 46.95% id in 411 aa
YP_049511.1	Similar to Yersinia pestis  sugar ABC transporter ypo1517 or y2651 SWALL:Q8ZG03 (EMBL:AJ414148) (363 aa) fasta scores: E(): 3.6e-111, 84.07% id in 358 aa, and to Rhizobium loti ABC transporter binding protein mlr7288 SWALL:Q986M5 (EMBL:AP003011) (340 aa) fasta scores: E(): 1.4e-24, 31.88% id in 345 aa
YP_049512.1	nitrate-inducible, cytochrome b556(fdn) component of formate dehydrogenase
YP_049513.1	Similar to Escherichia coli, and Shigella flexneri formate dehydrogenase, nitrate-inducible, iron-sulfur subunit FdnH or b1475 or sf1750 SWALL:FDNH_ECOLI (SWALL:P24184) (294 aa) fasta scores: E(): 1.1e-98, 81.63% id in 294 aa
YP_049514.1	Similar to Escherichia coli formate dehydrogenase, nitrate-inducible, major subunit FdnG or b1474 SWALL:FDNG_ECOLI (SWALL:P24183) (1015 aa) fasta scores: E(): 0, 69.75% id in 1015 aa
YP_049515.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_049516.1	Similar to Escherichia coli, and Escherichia coli O6 Mrp protein Mrp or b2113 or c2641 SWALL:MRP_ECOLI (SWALL:P21590) (369 aa) fasta scores: E(): 1.6e-109, 78.86% id in 369 aa, and to Shigella flexneri  ATPase Mrp or sf2178 SWALL:AAN43707 (EMBL:AE015233) (379 aa) fasta scores: E(): 3.1e-109, 78.59% id in 369 aa
YP_049517.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_049518.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_049519.1	YegA; inner membrane protein involved in the assembly of outer membrane proteins (OMPs); asmA-null mutants show low lipopolysaccharide (LPS) levels, suggesting a role in LPS biogenesis and/or in restricting outer membrane fluidity, resulting on altered assembly of OMPs
YP_049520.1	responsible for the transport of C4-dicarboxylates during anaerobic growth
YP_049521.1	Similar to Yersinia pestis  membrane protein ypo1527 SWALL:Q8ZFZ6 (EMBL:AJ414148) (528 aa) fasta scores: E(): 2.8e-151, 74.05% id in 528 aa, and to Escherichia coli hypothetical protein yegh or b2063 SWALL:YEGH_ECOLI (SWALL:P76389) (527 aa) fasta scores: E(): 1e-139, 69.18% id in 529 aa
YP_049522.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase WecA or Rfe or b3784 or c4704 or sf3858 SWALL:WECA_ECOLI (SWALL:P24235) (367 aa) fasta scores: E(): 3e-70, 52.18% id in 343 aa
YP_049523.1	Similar to Escherichia coli, and Escherichia coli O157:H7  polysaccharide export protein Wza precursor Wza or b2062 or z3227 or ecs2867 SWALL:WZA_ECOLI (SWALL:P76388) (379 aa) fasta scores: E(): 3.3e-105, 68.86% id in 379 aa
YP_049524.1	Similar to Salmonella typhimurium low molecular weight protein-tyrosine-phosphatase Wzb or stm2117 SWALL:WZB_SALTY (SWALL:Q9F7B2) (149 aa) fasta scores: E(): 1.5e-34, 65.73% id in 143 aa, and to Erwinia amylovora probable low molecular weight protein-tyrosine-phosphatase AmsI SWALL:AMSI_ERWAM (SWALL:Q46630) (144 aa) fasta scores: E(): 5.8e-37, 69.44% id in 144 aa
YP_049525.1	Wzc; catalyzes the autophosphorylation on tyrosine residues which downregulates the biosynthesis of colonic acid (an extracellular polysaccharide)
YP_049526.1	Similar to Salmonella typhimurium undecaprenyl-phosphate galactosephosphotransferase RfbP or stm2082 SWALL:RFBP_SALTY (SWALL:P26406) (476 aa) fasta scores: E(): 3e-129, 64.65% id in 464 aa, and to Erwinia amylovora UDP-galactose-lipid carrier transferase amsG SWALL:AMSG_ERWAM (SWALL:Q46628) (477 aa) fasta scores: E(): 2.8e-131, 66.3% id in 466 aa
YP_049527.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_049528.1	Similar to Yersinia pestis, and Yersinia pseudotuberculosis glucose-1-phosphate cytidylyltransferase DdhA or ypo3115 or y1068 SWALL:AAN23053 (EMBL:AJ414155) (261 aa) fasta scores: E(): 1.9e-88, 80.54% id in 257 aa, and to Salmonella typhimurium glucose-1-phosphate cytidylyltransferase RfbF or stm2092 SWALL:RFBF_SALTY (SWALL:P26396) (257 aa) fasta scores: E(): 4.3e-86, 78.2% id in 257 aa
YP_049529.1	Similar to Salmonella typhimurium CDP-glucose 4,6-dehydratase RfbG or stm2091 SWALL:RFBG_SALTY (SWALL:P26397) (359 aa) fasta scores: E(): 5e-105, 68.92% id in 354 aa, and to Yersinia pseudotuberculosis cdp-glucose-4,6-dehydratase DdhB SWALL:Q8GJ99 (EMBL:AF461768) (391 aa) fasta scores: E(): 2.4e-111, 71.19% id in 361 aa
YP_049530.1	Similar to Salmonella typhimurium lipopolysaccharide biosynthesis protein RfbH or stm2090 SWALL:RFBH_SALTY (SWALL:P26398) (437 aa) fasta scores: E(): 3.5e-143, 78.94% id in 437 aa, and to Yersinia pestis CDP-4-keto-6-deoxy-D-glucose-3-dehydratase DdhC or ypo3113 SWALL:Q9RCD0 (EMBL:AJ251713) (437 aa) fasta scores: E(): 2.7e-142, 78.26% id in 437 aa
YP_049531.1	Similar to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 4.9e-22, 32.4% id in 250 aa
YP_049532.1	Similar to Bacillus subtilis acetolactate synthase large subunit IlvB SWALL:ILVB_BACSU (SWALL:P37251) (573 aa) fasta scores: E(): 5.9e-45, 32.32% id in 563 aa
YP_049533.1	Similar to Leptospira interrogans dTDP-glucose 4,6-dehydratase RfbB1 or la0235 SWALL:AAN47434 (EMBL:AE011212) (321 aa) fasta scores: E(): 0.0023, 23.05% id in 321 aa, and to Pyrococcus horikoshii 306aa long hypothetical UDP-glucose 4-epimerase ph1742 SWALL:O59375 (EMBL:AP000007) (306 aa) fasta scores: E(): 0.011, 28.63% id in 213 aa
YP_049534.1	catalyzes the formation of acetyl-CoA from acetalaldehyde
YP_049535.1	catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate
YP_049536.1	Similar to Cicer arietinum dTDP-glucose 4-6-dehydratase SWALL:Q9SMJ5 (EMBL:AJ275318) (346 aa) fasta scores: E(): 1.7e-10, 28.52% id in 284 aa, and to Leptospira interrogans dTDP-glucose 4,6-dehydratase RfbB4 or la1661 SWALL:AAN48860 (EMBL:AE011344) (369 aa) fasta scores: E(): 1.2e-09, 28.67% id in 279 aa
YP_049537.1	Similar to Salmonella typhi  O-antigen transporter RfbX or sty2297 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 2.3e-41, 33.25% id in 418 aa, and to Yersinia pseudotuberculosis  O-antigen export protein RfbX SWALL:RFBX_YERPS (SWALL:Q05347) (437 aa) fasta scores: E(): 3.6e-33, 35.66% id in 429 aa
YP_049538.1	Similar to Streptococcus agalactiae CpsI cpsI SWALL:Q9RPC3 (EMBL:AF163833) (322 aa) fasta scores: E(): 2.4e-08, 26.76% id in 213 aa, and to Chlorobium tepidum glycosyl transferase ct0919 SWALL:Q8KDX5 (EMBL:AE012857) (288 aa) fasta scores: E(): 7.9e-13, 29.48% id in 251 aa
YP_049539.1	Similar to Ralstonia solanacearum  acyl transferase protein rsp1012 or rs02346 SWALL:Q8XR49 (EMBL:AL646082) (170 aa) fasta scores: E(): 4.2e-11, 36.7% id in 188 aa, and to Methanococcus jannaschii hypothetical protein Mj1064 SWALL:YA64_METJA (SWALL:Q58464) (214 aa) fasta scores: E(): 5.1e-10, 31.75% id in 211 aa
YP_049540.1	Similar to Vibrio cholerae WblE protein SWALL:O87161 (EMBL:AB012957) (359 aa) fasta scores: E(): 2.9e-09, 26.18% id in 317 aa, and to Streptococcus thermophilus EpsG SWALL:Q56044 (EMBL:U40830) (372 aa) fasta scores: E(): 1.1e-08, 26.85% id in 324 aa
YP_049541.1	Similar to Salmonella typhimurium, and Salmonella typhi O-antigen polymerase Rfc or stm1332 or sty1779 SWALL:RFC_SALTY (SWALL:P26479) (407 aa) fasta scores: E(): 1.4e-54, 39.58% id in 389 aa
YP_049542.1	Similar to Salmonella typhimurium RfbU protein RfbU or stm2086 SWALL:RFBU_SALTY (SWALL:P26402) (353 aa) fasta scores: E(): 2.8e-40, 45.65% id in 357 aa, and to Salmonella typhi  glycosyltransferase RfbU or sty2295 SWALL:Q8Z5I8 (EMBL:AL627273) (353 aa) fasta scores: E(): 2.8e-40, 45.93% id in 357 aa
YP_049543.1	Similar to Salmonella typhimurium o antigen biosynthesis rhamnosyltransferase RfbN or stm2085 SWALL:RFBN_SALTY (SWALL:P26403) (314 aa) fasta scores: E(): 2.1e-53, 45.24% id in 305 aa, and to Actinobacillus pleuropneumoniae  rhamnosyl transferase SWALL:Q9EYG7 (EMBL:AF329452) (303 aa) fasta scores: E(): 2.9e-54, 47.52% id in 303 aa
YP_049544.1	Similar to Escherichia coli mannose-1-phosphate guanylyltransferase ManC or CpsB or RfbM or b2049 SWALL:MANC_ECOLI (SWALL:P24174) (478 aa) fasta scores: E(): 2.1e-114, 60.88% id in 473 aa, and to Shigella flexneri mannose-1-phosphate guanyltransferase CpsB_1 or sf2112 SWALL:AAN43651 (EMBL:AE015227) (478 aa) fasta scores: E(): 5.5e-115, 61.31% id in 473 aa
YP_049545.1	Similar to Escherichia coli phosphomannomutase ManB or RfbK or RfbK2 SWALL:RFK9_ECOLI (SWALL:P37755) (456 aa) fasta scores: E(): 8.5e-137, 74.34% id in 456 aa
YP_049546.1	Similar to Escherichia coli dTDP-4-dehydrorhamnose reductase RfbD or RmlD or b2040 SWALL:RBD1_ECOLI (SWALL:P37760) (299 aa) fasta scores: E(): 8.3e-36, 41.72% id in 290 aa, and to Actinobacillus actinomycetemcomitans dTDP-4-keto-L-rhamnose reductase RmlD SWALL:Q9XDQ6 (EMBL:AB030032) (292 aa) fasta scores: E(): 4.3e-53, 51.56% id in 287 aa
YP_049547.1	Similar to Escherichia coli dTDP-6-deoxy-D-glucose-3,5 epimerase RmlC SWALL:AAN60457 (EMBL:AF529080) (180 aa) fasta scores: E(): 5.4e-40, 59.06% id in 171 aa, and to Salmonella typhimurium dTDP-4-dehydrorhamnose 3,5-epimerase RfbC or RmlC or stm2094 SWALL:RFBC_SALTY (SWALL:P26394) (183 aa) fasta scores: E(): 9.9e-41, 58.28% id in 175 aa
YP_049548.1	Similar to Escherichia coli, and Shigella flexneri glucose-1-phosphate thymidylyltransferase RffH or b3789 or sf3863 SWALL:RFFH_ECOLI (SWALL:P27831) (293 aa) fasta scores: E(): 7.2e-85, 76.22% id in 286 aa, and to Salmonella typhimurium glucose-1-phosphate thymidylyltransferase RfbA or stm2095 SWALL:RFBA_SALTY (SWALL:P26393) (292 aa) fasta scores: E(): 3.2e-76, 67.36% id in 285 aa
YP_049549.1	Similar to Escherichia coli, and Escherichia coli O157:H7 UTP--glucose-1-phosphate uridylyltransferase GalF or WcaN or b2042 or z3205 or ecs2846 SWALL:GALF_ECOLI (SWALL:P78083) (297 aa) fasta scores: E(): 7.1e-74, 65.43% id in 298 aa, and to Salmonella typhimurium, and Salmonella typhi UTP--glucose-1-phosphate uridylyltransferase GalF or stm2098 or sty2308 SWALL:GALF_SALTY (SWALL:P26390) (297 aa) fasta scores: E(): 7.1e-74, 64.43% id in 298 aa
YP_049550.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_049551.1	Similar to Vibrio parahaemolyticus hypothetical protein vp0218 SWALL:BAC58481 (EMBL:AP005073) (72 aa) fasta scores: E(): 0.015, 48.71% id in 78 aa, and to Vibrio vulnificus hypothetical protein vv10787 SWALL:Q8DE18 (EMBL:AE016799) (86 aa) fasta scores: E(): 0.58, 48.91% id in 92 aa
YP_049552.1	Similar to Vibrio cholerae DNA for otn region genes OtnE SWALL:Q56656 (EMBL:X90547) (229 aa) fasta scores: E(): 1.1e-22, 33.64% id in 211 aa, and to Shigella flexneri orf, conserved hypothetical protein yjbf or sf4178 SWALL:AAN45599 (EMBL:AE015426) (222 aa) fasta scores: E(): 4.3e-20, 34.52% id in 223 aa
YP_049553.1	Similar to Escherichia coli hypothetical protein ymcb precursor ymcb or b0985 SWALL:YMCB_ECOLI (SWALL:P75883) (248 aa) fasta scores: E(): 3.6e-08, 31% id in 258 aa, and to Shigella flexneri orf, conserved hypothetical protein ymcb or sf0987 SWALL:AAN42615 (EMBL:AE015127) (248 aa) fasta scores: E(): 3.6e-08, 32.04% id in 259 aa
YP_049554.1	Similar to Shigella flexneri orf, conserved hypothetical protein yjbh or sf4176 SWALL:AAN45597 (EMBL:AE015426) (698 aa) fasta scores: E(): 1e-142, 52.89% id in 673 aa, and to Escherichia coli hypothetical lipoprotein yjbh precursor yjbh or b4029 SWALL:YJBH_ECOLI (SWALL:P32689) (698 aa) fasta scores: E(): 5.8e-142, 53.04% id in 673 aa
YP_049555.1	catalyzes the interconversion of chorismate to prephenate
YP_049556.1	Similar to Bacillus subtilis kumamolysin kumA SWALL:Q8RR56 (EMBL:AB070740) (572 aa) fasta scores: E(): 6.7e-73, 42.67% id in 539 aa, and to Alicyclobacillus sendaienensis collagenolytic serine-carboxyl proteinase precursor AscP SWALL:BAC41257 (EMBL:AB085855) (553 aa) fasta scores: E(): 3.3e-72, 43.59% id in 539 aa
YP_049557.1	Similar to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.3e-55, 42.14% id in 484 aa, and to Streptomyces sp beta-glucosidase bgl3 SWALL:Q59976 (EMBL:Z29625) (479 aa) fasta scores: E(): 8.1e-57, 38.13% id in 472 aa
YP_049558.1	Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 3e-42, 42.23% id in 277 aa, and to Escherichia coli cryptic beta-glucoside bgl operon antiterminator BglG or BglC or b3723 SWALL:BGLG_ECOLI (SWALL:P11989) (278 aa) fasta scores: E(): 8.6e-39, 37.95% id in 274 aa. Also similar to ECA1869, ArbG, (45.600% id. in 250 aa overlap), and to ECA4389 (37.956% id. in 274 aa overlap), and to ECA0858 (37.500% id. in 272 aa overlap)
YP_049559.1	Similar to Salmonella typhimurium AdrA protein AdrA or YaiC or stm0385 SWALL:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 1.7e-63, 46.49% id in 342 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YaiC or b0385 or c0492 SWALL:YAIC_ECOLI (SWALL:P21830) (371 aa) fasta scores: E(): 2.9e-66, 47.98% id in 348 aa
YP_049560.1	Similar to Yersinia pestis hypothetical protein ypo2589 ypo2589 or y1159 SWALL:AAM84736 (EMBL:AJ414152) (95 aa) fasta scores: E(): 3.5e-24, 66.31% id in 95 aa, and to Clostridium acetobutylicum uncharacterized conserved protein, ygin family cac3394 SWALL:Q97DS8 (EMBL:AE007837) (96 aa) fasta scores: E(): 2.4e-09, 40.69% id in 86 aa
YP_049561.1	Similar to Salmonella typhimurium  transcriptional regulator stm4417 SWALL:Q8ZK65 (EMBL:AE008907) (277 aa) fasta scores: E(): 1.2e-62, 65.29% id in 268 aa, and to Yersinia pestis hypothetical protein ypo2576 or y1145 SWALL:Q8ZDJ0 (EMBL:AJ414152) (284 aa) fasta scores: E(): 4.3e-82, 79.93% id in 284 aa
YP_049562.1	Similar to Pseudomonas aeruginosa methylmalonate-semialdehyde dehydrogenase [acylating] MmsA or pa3570 SWALL:MMSA_PSEAE (SWALL:P28810) (496 aa) fasta scores: E(): 2.6e-87, 49.68% id in 483 aa, and to Yersinia pestis  aldehyde dehydrogenase ypo2577 or y1146 SWALL:Q8ZDI9 (EMBL:AJ414152) (508 aa) fasta scores: E(): 1.9e-151, 78.62% id in 510 aa
YP_049563.1	Similar to Yersinia pestis  thiamine pyrophosphate-dependent protein ypo2578 SWALL:Q8ZDI8 (EMBL:AJ414152) (648 aa) fasta scores: E(): 1.8e-193, 74.33% id in 643 aa, and to Clostridium perfringens myo-inositol catabolism protein iold or cpe0089 SWALL:Q8XP76 (EMBL:AP003185) (639 aa) fasta scores: E(): 3.3e-142, 57.12% id in 639 aa
YP_049564.1	Similar to Rhizobium meliloti myo-inositol 2-dehydrogenase IdhA or rb1194 or smb20899 SWALL:MI2D_RHIME (SWALL:O68965) (330 aa) fasta scores: E(): 4.2e-59, 49.84% id in 323 aa, and to Brucella melitensis myo-inositol 2-dehydrogenase bmeii0574 SWALL:Q8YCF6 (EMBL:AE009694) (334 aa) fasta scores: E(): 1.7e-60, 51.07% id in 325 aa
YP_049565.1	Similar to Salmonella typhimurium, and Salmonella typhi D-ribose-binding periplasmic protein precursor RbsP or stm3884 or sty3894 SWALL:RBSB_SALTY (SWALL:P02926) (296 aa) fasta scores: E(): 6.8e-24, 35.95% id in 267 aa, and to Yersinia pestis  sugar-binding periplasmic protein ypo2581 SWALL:Q8ZDI7 (EMBL:AJ414152) (309 aa) fasta scores: E(): 6.5e-87, 80.76% id in 312 aa
YP_049566.1	Similar to Yersinia pestis ATP-binding component of D-ribose high-affinity transport system RbsA or y1150 SWALL:AAM84727 (EMBL:AE013719) (515 aa) fasta scores: E(): 1.9e-156, 80.19% id in 515 aa, and to Caulobacter crescentus sugar ABC transporter, ATP-binding protein cc0860 SWALL:Q9A9V1 (EMBL:AE005763) (515 aa) fasta scores: E(): 5.3e-94, 53.72% id in 510 aa
YP_049567.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 8.2e-43, 43.93% id in 330 aa, and to Yersinia pestis sugar transport system permease protein ypo2583 or rbsc or y1151 SWALL:Q8ZDI5 (EMBL:AJ414152) (342 aa) fasta scores: E(): 8.4e-110, 87.64% id in 340 aa
YP_049568.1	Similar to Yersinia pestis hypothetical protein Ypo2584 SWALL:Q8ZDI4 (EMBL:AJ414152) (377 aa) fasta scores: E(): 1.1e-117, 76.59% id in 376 aa, and to Rhizobium meliloti  oxidoreductase protein r00356 or smc01163 SWALL:Q92SL5 (EMBL:AL591783) (376 aa) fasta scores: E(): 6.5e-61, 45.92% id in 368 aa
YP_049569.1	Similar to Bacillus subtilis protein IolC or e83C SWALL:IOLC_BACSU (SWALL:P42414) (325 aa) fasta scores: E(): 1e-21, 31.64% id in 335 aa, and to Yersinia pestis carbohydrate kinase ypo2585 or y1153 SWALL:Q8ZDI3 (EMBL:AJ414152) (656 aa) fasta scores: E(): 3.8e-208, 78.44% id in 631 aa
YP_049570.1	Similar to Rhizobium meliloti rhizopine catabolism protein MocC mocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.3e-63, 53.58% id in 293 aa, and to Bacillus subtilis IolE protein IolE e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.1e-37, 37.67% id in 284 aa
YP_049571.1	Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium  inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa
YP_049572.1	Similar to Enterobacter aerogenes KluB SWALL:Q93KC5 (EMBL:U67194) (104 aa) fasta scores: E(): 1.4e-21, 58.41% id in 101 aa, and to Pseudomonas sp. hypothetical 11.6 kDa protein orf1 SWALL:Q937D2 (EMBL:U66917) (104 aa) fasta scores: E(): 8.5e-22, 59.4% id in 101 aa
YP_049573.1	Similar to Enterobacter aerogenes KluA kluA SWALL:Q93KC6 (EMBL:U67194) (89 aa) fasta scores: E(): 6e-17, 60.92% id in 87 aa, and to Pseudomonas sp. hypothetical 10.2 kDa protein orf2 SWALL:Q937D1 (EMBL:U66917) (93 aa) fasta scores: E(): 6.3e-17, 60.92% id in 87 aa
YP_049574.1	Similar to Pseudomonas putida ABC transporter, ATP-binding protein,  pp1078 SWALL:AAN66703 (EMBL:AE016778) (369 aa) fasta scores: E(): 1.5e-40, 54.5% id in 222 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tll1492 SWALL:BAC09044 (EMBL:AP005374) (373 aa) fasta scores: E(): 1.5e-37, 54.83% id in 217 aa
YP_049575.1	Similar to Brucella suis iron compound ABC transporter, permease protein,  bra0699 SWALL:AAN33884 (EMBL:AE014565) (589 aa) fasta scores: E(): 1.3e-97, 51.53% id in 553 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein fbpa3 or atu0408 or agr_c_717 SWALL:Q8UI90 (EMBL:AE009011) (558 aa) fasta scores: E(): 1.3e-95, 52.94% id in 527 aa
YP_049576.1	Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein fbpa or atu0407 or agr_c_715 SWALL:Q8UI91 (EMBL:AE009011) (351 aa) fasta scores: E(): 5.4e-84, 64.18% id in 349 aa, and to Brucella melitensis iron bmeii0584 SWALL:Q8YCE7 (EMBL:AE009695) (338 aa) fasta scores: E(): 1.2e-83, 64.93% id in 328 aa
YP_049577.1	Similar to the C-terminal regions of Escherichia coli hypothetical protein YeaP or b1794 SWALL:YEAP_ECOLI (SWALL:P76245) (341 aa) fasta scores: E(): 0.00026, 41.79% id in 67 aa, and to Shigella flexneri orf, conserved hypothetical protein yeap or sf1430 SWALL:AAN43030 (EMBL:AE015167) (384 aa) fasta scores: E(): 0.00029, 41.79% id in 67 aa
YP_049578.1	Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein T1150 t1150 SWALL:AAO68810 (EMBL:AE016838) (60 aa) fasta scores: E(): 2.6e-06, 52.72% id in 55 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yoag or b1796 or c2202 or z2838 or ecs2505 SWALL:YOAG_ECOLI (SWALL:P76247) (60 aa) fasta scores: E(): 7.9e-06, 49.09% id in 55 aa
YP_049579.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein year or b1797 or z2839 or ecs2506 SWALL:YEAR_ECOLI (SWALL:P76248) (119 aa) fasta scores: E(): 3.1e-30, 66.66% id in 105 aa, and to Salmonella typhi hypothetical protein Sty1850 SWALL:Q8Z6D6 (EMBL:AL627271) (120 aa) fasta scores: E(): 5.8e-30, 65.71% id in 105 aa
YP_049580.1	Similar to Bacillus halodurans hypothetical protein Bh0392 SWALL:Q9KFT5 (EMBL:AP001508) (202 aa) fasta scores: E(): 6.2e-23, 38.54% id in 192 aa, and to Thermoplasma acidophilum hypothetical protein Ta1444 SWALL:Q9HI97 (EMBL:AL445067) (214 aa) fasta scores: E(): 1.2e-18, 37.11% id in 194 aa
YP_049581.1	Similar to Ralstonia solanacearum hypothetical protein rsc3100 or rs00553 SWALL:Q8XUT5 (EMBL:AL646073) (131 aa) fasta scores: E(): 0.0028, 31.3% id in 115 aa, and to Halobacterium sp. Vng0367H SWALL:Q9HS78 (EMBL:AE004995) (114 aa) fasta scores: E(): 0.049, 28.71% id in 101 aa
YP_049582.1	Similar to Ralstonia solanacearum hypothetical protein rsc2590 or rs00838 SWALL:Q8XW85 (EMBL:AL646070) (128 aa) fasta scores: E(): 2.3e-14, 57.33% id in 75 aa, and to Mycobacterium tuberculosis hypothetical protein rv2740 or mtv002.05 SWALL:O33283 (EMBL:AL008967) (149 aa) fasta scores: E(): 0.3, 36.23% id in 69 aa
YP_049583.1	Similar to Ralstonia solanacearum probable transcription regulator protein rsc2598 or rs00846 SWALL:Q8XW77 (EMBL:AL646070) (299 aa) fasta scores: E(): 7.9e-85, 74.4% id in 293 aa, and to Rhizobium loti probable transcriptional regulator mlr2197 SWALL:Q98IX9 (EMBL:AP002999) (298 aa) fasta scores: E(): 3.3e-49, 48.92% id in 280 aa
YP_049584.1	Similar to Agrobacterium tumefaciens transcriptional regulator, LysR family atu5325 or agr_pat_467 SWALL:Q8UJZ9 (EMBL:AE008954) (300 aa) fasta scores: E(): 6.9e-83, 71.33% id in 300 aa, and to Rhizobium loti transcriptional regulator mll2784 SWALL:Q98HN8 (EMBL:AP003000) (307 aa) fasta scores: E(): 1.2e-37, 39.11% id in 294 aa
YP_049585.1	Similar to Streptomyces avermitilis  zinc-binding oxidoreductase SWALL:BAC68386 (EMBL:AP005023) (331 aa) fasta scores: E(): 1e-66, 58.55% id in 333 aa, and to Agrobacterium tumefaciens zinc-binding oxidoreductase atu5324 or agr_pat_466 SWALL:Q8UK00 (EMBL:AE008954) (353 aa) fasta scores: E(): 4.3e-92, 73.73% id in 335 aa
YP_049586.1	Similar to Pseudomonas putida thymidylate kinase, pp3363 SWALL:AAN68967 (EMBL:AE016786) (205 aa) fasta scores: E(): 1.3e-57, 73.76% id in 202 aa
YP_049587.1	Similar to Rhizobium loti transcriptional regulator mlr0648 SWALL:Q98MB4 (EMBL:AP002995) (311 aa) fasta scores: E(): 4.8e-28, 31.95% id in 291 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa1328 SWALL:Q9I416 (EMBL:AE004562) (302 aa) fasta scores: E(): 3.5e-27, 34.72% id in 288 aa
YP_049588.1	Similar to Klebsiella aerogenes KefC regulator YabF SWALL:Q9X755 (EMBL:AJ242913) (177 aa) fasta scores: E(): 4.1e-15, 36.36% id in 176 aa, and to Escherichia coli, and Escherichia coli O6  NAD(P)H oxidoreductase YabF or b0046 or c0056 SWALL:YABF_ECOLI (SWALL:P31577) (176 aa) fasta scores: E(): 1e-17, 46.47% id in 142 aa
YP_049589.1	Similar to Yersinia pestis hypothetical protein Ypo1733 SWALL:Q8ZFH6 (EMBL:AJ414150) (94 aa) fasta scores: E(): 9.6e-06, 33.33% id in 87 aa, and to Rhizobium loti hypothetical protein Mlr3009 SWALL:Q98H68 (EMBL:AP003000) (101 aa) fasta scores: E(): 0.00016, 37.2% id in 86 aa
YP_049590.1	Similar to Fusobacterium nucleatum hypothetical cytosolic protein Fn1347 SWALL:Q8RDZ4 (EMBL:AE010639) (218 aa) fasta scores: E(): 2.7e-21, 31.77% id in 214 aa, and to Rhizobium meliloti hypothetical protein ra0291 or sma0558 SWALL:Q930A7 (EMBL:AE007221) (170 aa) fasta scores: E(): 6.4e-06, 34.94% id in 83 aa
YP_049591.1	Similar to Pseudomonas syringae ATP-binding protein SyrD SWALL:SYRD_PSESY (SWALL:P33951) (566 aa) fasta scores: E(): 1.2e-54, 34.27% id in 566 aa, and to Synechococcus elongatus ABC transporter ATP-binding protein tlr1649 SWALL:BAC09201 (EMBL:AP005374) (542 aa) fasta scores: E(): 6e-69, 39.92% id in 541 aa
YP_049592.1	Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 43.13% id in 6600 aa, and to Anabaena sp. 90 peptide synthetase AdpB SWALL:Q9K5M1 (EMBL:AJ269505) (5060 aa) fasta scores: E(): 2.8e-208, 34.22% id in 4859 aa
YP_049593.1	Similar to Pseudomonas syringae syringomycin synthetase SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 42.92% id in 7655 aa, and to Pseudomonas sp. MIS38 arthrofactin synthetase c arfC SWALL:BAC67536 (EMBL:AB107223) (5924 aa) fasta scores: E(): 0, 46.8% id in 5469 aa
YP_049594.1	lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments
YP_049595.1	forms a homotetramer; hydrolyzes lactose disaccharide to galactose and glucose; converts lactose to allolactose which is the natural inducer of the lac operon
YP_049596.1	transcriptional repressor of lac operon; forms a homotetramer as a dimer of dimers; binds specific sites in lac operon resulting in DNA looping between the operators; binds allolactose as inducer
YP_049597.1	Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import
YP_049598.1	Similar to Actinobacillus pleuropneumoniae ferric transport system permease protein AfuB SWALL:AFUB_ACTPL (SWALL:Q44123) (687 aa) fasta scores: E(): 8.6e-167, 64.73% id in 672 aa, and to Escherichia coli O157:H7 permease component of transport system for ferric iron AfuB or z0459 or ecs0414 SWALL:Q8X5J2 (EMBL:AE005215) (692 aa) fasta scores: E(): 2.1e-217, 81.21% id in 692 aa
YP_049599.1	Similar to Actinobacillus pleuropneumoniae AfuA protein afuA SWALL:Q57512 (EMBL:U05042) (346 aa) fasta scores: E(): 1.4e-97, 69.56% id in 345 aa, and to Escherichia coli O157:H7 periplasmic ferric iron-binding protein AfuA or z0460 or ecs0415 SWALL:Q8X5J1 (EMBL:AE005215) (343 aa) fasta scores: E(): 4.2e-115, 84.01% id in 344 aa
YP_049600.1	Similar to Escherichia coli regulatory protein UhpC or b3667 SWALL:UHPC_ECOLI (SWALL:P09836) (439 aa) fasta scores: E(): 3.6e-99, 53.34% id in 433 aa, and to Yersinia pestis  regulatory protein UhpC or ypo4007 SWALL:Q8ZA15 (EMBL:AJ414160) (443 aa) fasta scores: E(): 3.8e-103, 56.11% id in 417 aa
YP_049601.1	Similar to Escherichia coli sensor protein UhpB or b3668 SWALL:UHPB_ECOLI (SWALL:P09835) (500 aa) fasta scores: E(): 1e-25, 36.17% id in 528 aa, and to Vibrio cholerae sensor protein UhpB vca0683 SWALL:Q9KLQ9 (EMBL:AE004397) (527 aa) fasta scores: E(): 3.7e-66, 42.47% id in 518 aa
YP_049602.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri transcriptional regulatory protein UhpA or b3669 or c4593 or z5159 or ecs4606 or sf3792 SWALL:UHPA_ECOLI (SWALL:P10940) (196 aa) fasta scores: E(): 1.2e-29, 48.98% id in 196 aa
YP_049603.1	Similar to Escherichia coli lipoprotein-28 precursor NlpA or b3661 SWALL:NLPA_ECOLI (SWALL:P04846) (272 aa) fasta scores: E(): 4e-69, 73.18% id in 261 aa
YP_049604.1	Previously sequenced as Erwinia carotovora pectin lyase Pnl SWALL:PLYD_ERWCA (SWALL:P24112) (314 aa) fasta scores: E(): 5.8e-119, 94.58% id in 314 aa
YP_049605.1	Similar to Streptococcus thermophilus aspartate racemase SWALL:RACD_STRTR (SWALL:P29079) (243 aa) fasta scores: E(): 1.2e-13, 31.33% id in 233 aa, and to Erwinia carotovora hypothetical protein in pnlA 3'region SWALL:YPNL_ERWCA (SWALL:P32968) (150 aa) fasta scores: E(): 4.2e-52, 93.33% id in 150 aa
YP_049606.1	Similar to Escherichia coli hypothetical transcriptional regulator yjie or b4327 SWALL:YJIE_ECOLI (SWALL:P39376) (303 aa) fasta scores: E(): 3.1e-55, 50% id in 294 aa, and to Shigella flexneri  transcriptional regulator LysR-type yjie or sf4191 SWALL:AAN45612 (EMBL:AE015427) (303 aa) fasta scores: E(): 1.6e-54, 49.66% id in 294 aa
YP_049607.1	Similar to Escherichia coli proton glutamate symport protein GltP or b4077 SWALL:GLTP_ECOLI (SWALL:P21345) (437 aa) fasta scores: E(): 2.1e-54, 38.47% id in 434 aa
YP_049608.1	Similar to Ralstonia solanacearum probable transcription regulator protein rsp0328 or rs05438 SWALL:Q8XSY9 (EMBL:AL646078) (311 aa) fasta scores: E(): 8.3e-33, 36.86% id in 293 aa, and to Ralstonia solanacearum  transcription regulator protein rsp0331 or rs00705 SWALL:Q8XSY6 (EMBL:AL646078) (298 aa) fasta scores: E(): 1.4e-29, 35.19% id in 287 aa
YP_049609.1	Similar to Bacillus subtilis mg citM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 1.4e-80, 53.24% id in 432 aa, and to Bacillus subtilis citrate transporter CitN or CitH or n15cR SWALL:CITN_BACSU (SWALL:P42308) (426 aa) fasta scores: E(): 3.2e-91, 57.14% id in 434 aa
YP_049610.1	Similar to Escherichia coli formate dehydrogenase H FdhF or b4079 SWALL:FDHF_ECOLI (SWALL:P07658) (715 aa) fasta scores: E(): 1.3e-194, 66.52% id in 699 aa
YP_049611.1	Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.1e-56, 39.57% id in 566 aa
YP_049612.1	Similar to Yersinia pestis similarity to some hypothetical proteins in b. subtilis ypo1941 or y2370 SWALL:Q9ZC51 (EMBL:AL031866) (639 aa) fasta scores: E(): 5.2e-172, 74.02% id in 639 aa, and to Pasteurella multocida hypothetical protein Pm0453 pSWALL:Q9CNH8 (EMBL:AE006081) (634 aa) fasta scores: E(): 9.6e-146, 64.36% id in 623 aa
YP_049613.1	Similar to Yersinia pestis 102 kbases unstable region: from 1 to 119443 ypo1942 SWALL:Q9ZC52 (EMBL:AL031866) (175 aa) fasta scores: E(): 2.4e-63, 86.78% id in 174 aa, and to Pasteurella multocida hypothetical protein Pm0452 SWALL:Q9CNH9 (EMBL:AE006081) (173 aa) fasta scores: E(): 1.1e-57, 79.06% id in 172 aa
YP_049614.1	Similar to Yersinia pestis  integral membrane protein y2367 SWALL:AAM85925 (EMBL:AE013839) (484 aa) fasta scores: E(): 1.4e-119, 63.36% id in 464 aa, and to Pasteurella multocida hypothetical protein Pm0451 SWALL:Q9CNI0 (EMBL:AE006080) (465 aa) fasta scores: E(): 2e-85, 49.67% id in 463 aa
YP_049615.1	Similar to Yersinia pestis similar to ABC transporter: eg ybjz_ecoli hypothetical ABC transporter ypo1944 or y2366 SWALL:AAM85924 (EMBL:AL031866) (430 aa) fasta scores: E(): 9.9e-137, 81.86% id in 430 aa, and to Pasteurella multocida hypothetical protein Pm0450 SWALL:Q9CNI1 (EMBL:AE006080) (440 aa) fasta scores: E(): 4.2e-79, 67.95% id in 440 aa
YP_049616.1	Similar to Yersinia pestis  integral membrane protein y2365 SWALL:Q8D0D2 (EMBL:AE013839) (406 aa) fasta scores: E(): 5.3e-111, 83.06% id in 372 aa, and to Pasteurella multocida hypothetical protein Pm0449 SWALL:Q9CNI2 (EMBL:AE006080) (371 aa) fasta scores: E(): 1.3e-90, 67.92% id in 371 aa
YP_049617.1	Similar to Yersinia pestis similar to many ypo1946 or y2364 SWALL:AAM85922 (EMBL:AL031866) (237 aa) fasta scores: E(): 4.4e-66, 80.85% id in 235 aa, and to Pasteurella multocida hypothetical protein Pm0448 SWALL:Q9CNI3 (EMBL:AE006080) (227 aa) fasta scores: E(): 1.6e-59, 80% id in 220 aa
YP_049618.1	Similar to Yersinia pestis  thioredoxin-family protein y2363 SWALL:AAM85921 (EMBL:AE013839) (176 aa) fasta scores: E(): 3.3e-34, 60.49% id in 162 aa, and to Pasteurella multocida ResA or pm0447 SWALL:Q9CNI4 (EMBL:AE006080) (175 aa) fasta scores: E(): 3e-18, 40% id in 165 aa
YP_049619.1	Similar to Escherichia coli hypothetical protein ytff or b4210 SWALL:YTFF_ECOLI (SWALL:P39314) (324 aa) fasta scores: E(): 5.1e-83, 64.24% id in 316 aa, and to Salmonella typhimurium  cationic amino acid transporter ytff or stm4400 SWALL:Q8ZK75 (EMBL:AE008906) (321 aa) fasta scores: E(): 6.8e-83, 64.59% id in 322 aa
YP_049620.1	Similar to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 1.1e-30, 40.21% id in 281 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.3e-30, 35.44% id in 268 aa
YP_049621.1	Similar to Escherichia coli transcriptional regulator Cbl or b1987 SWALL:CBL_ECOLI (SWALL:Q47083) (316 aa) fasta scores: E(): 2.1e-84, 70.34% id in 317 aa, and to Klebsiella aerogenes transcriptional regulator Cbl SWALL:CBL_KLEAE (SWALL:Q08598) (316 aa) fasta scores: E(): 2.5e-85, 71.92% id in 317 aa
YP_049622.1	carrier protein part of the Na(+)-independent, binding-protein-independent glutamate-aspartate transport system
YP_049623.1	no significant database matches
YP_049624.1	no significant database matches
YP_049625.1	Similar to Escherichia coli, and Escherichia coli O6 glycerol dehydrogenase GldA or b3945 or c4904 SWALL:GLDA_ECOLI (SWALL:P32665) (367 aa) fasta scores: E(): 3.2e-32, 36.26% id in 353 aa
YP_049626.1	Similar to Pseudomonas putida ABC transporter, permease protein pp0172 SWALL:AAN65805 (EMBL:AE016774) (287 aa) fasta scores: E(): 3.9e-82, 74.2% id in 283 aa, and to Xanthomonas axonopodis permease nrtb or xac0827 SWALL:Q8PP61 (EMBL:AE011714) (294 aa) fasta scores: E(): 2e-74, 67.95% id in 284 aa
YP_049627.1	Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa2308 SWALL:Q9I1G7 (EMBL:AE004657) (282 aa) fasta scores: E(): 2.2e-67, 75.61% id in 246 aa, and to Xanthomonas campestris ABC transporter ATP-binding component nrtcd or xcc0773 SWALL:Q8PCG1 (EMBL:AE012177) (279 aa) fasta scores: E(): 1.8e-64, 70.91% id in 251 aa
YP_049628.1	Similar to Pseudomonas putida ABC transporter, periplasmic binding protein pp0170 SWALL:AAN65803 (EMBL:AE016774) (339 aa) fasta scores: E(): 9.4e-68, 56.11% id in 335 aa, and to Xanthomonas axonopodis ABC transporter substrate binding protein xac0829 SWALL:Q8PP59 (EMBL:AE011714) (338 aa) fasta scores: E(): 1.1e-54, 47.72% id in 329 aa
YP_049629.1	Similar to Methanococcus jannaschii L-sulfolactate dehydrogenase ComC or Mdh or mj1425 SWALL:COMC_METJA (SWALL:Q58820) (344 aa) fasta scores: E(): 1.5e-25, 31.57% id in 323 aa, and to Escherichia coli O157:H7 hypothetical oxidoreductase ybic ybic or z1022 or ecs0879 SWALL:YBIC_ECO57 (SWALL:P58409) (361 aa) fasta scores: E(): 4e-52, 43.33% id in 330 aa
YP_049630.1	Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 2.3e-23, 29.21% id in 332 aa, and to Rhizobium loti taurine transport system periplasmic protein mlr4517 SWALL:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 2e-27, 32.74% id in 342 aa
YP_049631.1	Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-40, 41.6% id in 250 aa
YP_049632.1	Similar to Escherichia coli taurine transport ATP-binding protein TauB or SsiB or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 1.3e-36, 45.18% id in 239 aa
YP_049633.1	catalyzes the formation of pyruvate from D-cysteine
YP_049634.1	Similar to Streptococcus thermophilus aspartate racemase SWALL:RACD_STRTR (SWALL:P29079) (243 aa) fasta scores: E(): 9.6e-15, 30.43% id in 207 aa, and to Pyrococcus furiosus  aspartate racemase pf0980 SWALL:Q8U269 (EMBL:AE010210) (228 aa) fasta scores: E(): 1.1e-27, 40.26% id in 231 aa
YP_049635.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters
YP_049636.1	Similar to Pseudomonas fluorescens outer membrane protein HasF SWALL:Q9RHT0 (EMBL:AB023289) (442 aa) fasta scores: E(): 1.5e-85, 54.96% id in 433 aa, and to Erwinia chrysanthemi proteases secretion protein PrtF precursor prtF SWALL:PRTF_ERWCH (SWALL:P23598) (462 aa) fasta scores: E(): 2.1e-75, 48.82% id in 424 aa. Also similar to ECA2781 (48.956% identity in 431 aa overlap)
YP_049637.1	Similar to Pseudomonas fluorescens membrane fusion protein HasE SWALL:Q9RHT1 (EMBL:AB023289) (443 aa) fasta scores: E(): 2.5e-67, 52.28% id in 438 aa, and to Erwinia chrysanthemi proteases secretion protein PrtE SWALL:PRTE_ERWCH (SWALL:P23597) (448 aa) fasta scores: E(): 3.8e-62, 46.03% id in 441 aa. Also similar to ECA2782 (47.529% identity in 425 aa overlap)
YP_049638.1	Similar to Pseudomonas fluorescens ABC protein HasD SWALL:Q9RHT2 (EMBL:AB023289) (580 aa) fasta scores: E(): 2.6e-129, 65.58% id in 584 aa, and to Erwinia chrysanthemi proteases secretion ATP-binding protein PrtD SWALL:PRTD_ERWCH (SWALL:P23596) (575 aa) fasta scores: E(): 5.2e-113, 59.47% id in 570 aa. Also similar to ECA2783 (58.719% id. in 562 aa overlap)
YP_049639.1	Similar to Serratia marcescens hemophore HasA SWALL:HASA_SERMA (SWALL:Q54450) (188 aa) fasta scores: E(): 6.1e-27, 50.27% id in 183 aa, and to Pseudomonas aeruginosa HasaP or pa3407 SWALL:O69756 (EMBL:Y16895) (205 aa) fasta scores: E(): 8.3e-25, 45.71% id in 210 aa
YP_049640.1	Similar to Serratia marcescens HasR protein SWALL:P72473 (EMBL:Y08983) (899 aa) fasta scores: E(): 2.1e-176, 62.03% id in 893 aa, and to Yersinia pestis TonB dependent receptor protein ypo3923 or hasr or y0313 SWALL:Q8ZA89 (EMBL:AJ414159) (830 aa) fasta scores: E(): 1.5e-86, 52.03% id in 786 aa
YP_049641.1	Similar to Pseudomonas aeruginosa probable transmembrane sensor pa3409 SWALL:Q9HYJ6 (EMBL:AE004762) (328 aa) fasta scores: E(): 2.2e-40, 42.68% id in 328 aa, and to Pseudomonas putida transmembrane sensor,  pp4607 SWALL:AAN70180 (EMBL:AE016791) (326 aa) fasta scores: E(): 2.6e-25, 36.13% id in 321 aa
YP_049642.1	Similar to Pseudomonas aeruginosa  RNA polymerase sigma factor pa3410 SWALL:Q9HYJ5 (EMBL:AE004762) (171 aa) fasta scores: E(): 9.6e-18, 41.76% id in 170 aa, and to Pseudomonas putida RNA polymerase sigma-70 factor, ECF subfamily pp1008 SWALL:AAN66633 (EMBL:AE016777) (170 aa) fasta scores: E(): 1.7e-11, 36.52% id in 167 aa
YP_049643.1	no significant database matches
YP_049644.1	catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation
YP_049645.2	catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate
YP_049646.1	Similar to Rhodobacter capsulatus hydroxyneurosporene methyltransferase CrtF SWALL:CRTF_RHOCA (SWALL:P17061) (393 aa) fasta scores: E(): 7.1e-08, 26.82% id in 328 aa, and to Pseudomonas stutzeri  methyltransferase pdtorfP SWALL:Q9L8Q2 (EMBL:AF196567) (351 aa) fasta scores: E(): 2.5e-32, 39.88% id in 336 aa
YP_049647.1	Similar to Neisseria meningitidis  AraC-family transcriptional regulator nma0578 SWALL:Q9JW23 (EMBL:AL162753) (318 aa) fasta scores: E(): 2.2e-06, 26.26% id in 316 aa, and to Pseudomonas stutzeri transcriptional activator pdtorfC SWALL:Q9L8R1 (EMBL:AF196567) (235 aa) fasta scores: E(): 2e-15, 35.65% id in 230 aa
YP_049648.1	Similar to Escherichia coli, and Escherichia coli O157:H7 proline/betaine transporter ProP or b4111 or z5713 or ecs5093 SWALL:PROP_ECOLI (SWALL:P30848) (500 aa) fasta scores: E(): 9.5e-152, 75.9% id in 498 aa
YP_049649.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_049650.1	Similar to Streptomyces coelicolor  transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa
YP_049651.1	Similar to Streptomyces coelicolor  solute-binding lipoprotein sco6644 or sc4g2.18 SWALL:O86690 (EMBL:AL939128) (503 aa) fasta scores: E(): 1.4e-76, 46.09% id in 486 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu1202 or agr_c_2215 SWALL:Q8UG40 (EMBL:AE009083) (509 aa) fasta scores: E(): 4.9e-23, 33.63% id in 440 aa
YP_049652.1	Similar to Streptomyces coelicolor  transport system permease protein sco6646 or sc4g2.20 SWALL:O86692 (EMBL:AL939128) (436 aa) fasta scores: E(): 5e-56, 43.9% id in 394 aa, and to Mycobacterium tuberculosis  membrane transport protein rv0849 or mtv043.42 SWALL:O53861 (EMBL:AL022004) (419 aa) fasta scores: E(): 9.5e-37, 35.88% id in 379 aa
YP_049653.1	Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3437 or agr_l_2779 SWALL:Q8UAD7 (EMBL:AE009274) (311 aa) fasta scores: E(): 1.9e-27, 43.86% id in 228 aa, and to Brucella suis peptide ABC transporter, ATP-binding protein bra0404 SWALL:AAN33601 (EMBL:AE014539) (317 aa) fasta scores: E(): 7.6e-26, 35.52% id in 259 aa
YP_049654.1	Similar to Bifidobacterium longum probable ATP-binding protein of ABC transporter system for peptides OppD or bl1158 SWALL:AAN24963 (EMBL:AE014740) (263 aa) fasta scores: E(): 4.5e-27, 43.08% id in 253 aa, and to Corynebacterium efficiens  ABC transporter ATP-binding protein ce2227 SWALL:BAC19037 (EMBL:AP005221) (491 aa) fasta scores: E(): 1.1e-25, 41.12% id in 248 aa
YP_049655.1	Partial CDS. Similar to the C-terminal region of Photorhabdus luminescens transposase Tnp SWALL:AAN64216 (EMBL:AY144118) (328 aa) fasta scores: E(): 0.00016, 32.39% id in 142 aa, and to Salmonella typhimurium transposase stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 1.9e-09, 32.03% id in 128 aa
YP_049656.1	Doubtful CDS. No significant database matches
YP_049657.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2336 SWALL:Q9I1E2 (EMBL:AE004659) (446 aa) fasta scores: E(): 5.1e-44, 39.82% id in 467 aa, and to Salmonella typhimurium  pqq enzyme repeat stm3632 SWALL:Q8ZLA7 (EMBL:AE008868) (374 aa) fasta scores: E(): 9e-07, 30.04% id in 406 aa
YP_049658.1	Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 2.6e-52, 63.59% id in 239 aa, and to Bacillus subtilis  aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.4e-34, 43.72% id in 247 aa, and to
YP_049659.1	Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 1.1e-103, 55.88% id in 510 aa, and to Bacillus subtilis  aliphatic sulfonates transport permease protein SsuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 1.6e-23, 36.14% id in 249 aa
YP_049660.1	Similar to Pseudomonas putida AtsR SWALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 2.2e-49, 45.8% id in 334 aa, and to Bacillus subtilis  aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 9.5e-14, 26.68% id in 341 aa
YP_049661.1	Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa
YP_049662.1	Similar to Escherichia coli CDP-diacylglycerol pyrophosphatase Cdh or b3918 SWALL:CDH_ECOLI (SWALL:P06282) (251 aa) fasta scores: E(): 7.1e-40, 43.65% id in 252 aa
YP_049663.1	Similar to Erwinia chrysanthemi transcriptional activator protein EchR SWALL:ECHR_ERWCH (SWALL:Q46967) (250 aa) fasta scores: E(): 5e-67, 72.35% id in 246 aa, and to Erwinia carotovora transcriptional activator protein ExpR SWALL:EXPR_ERWCA (SWALL:Q47189) (245 aa) fasta scores: E(): 1.3e-57, 59.5% id in 242 aa. Also similar to ECA0106 (ExpR) (67.839% in 199 aa overlap)
YP_049664.1	Similar to Xanthomonas campestris transcriptional regulator xcc2684 SWALL:Q8P7C7 (EMBL:AE012381) (205 aa) fasta scores: E(): 8.3e-18, 33.49% id in 203 aa, and to Vibrio cholerae transcriptional regulator, tetr family vc1408 SWALL:Q9KS52 (EMBL:AE004219) (200 aa) fasta scores: E(): 2e-17, 38.94% id in 190 aa
YP_049665.1	Similar to Ralstonia solanacearum hypothetical protein rsc0600 rsc0600 or rs04845 SWALL:Q8Y1T9 (EMBL:AL646060) (211 aa) fasta scores: E(): 3.1e-14, 35.29% id in 187 aa, and to Pseudomonas putida conserved domain protein pp2578 SWALL:AAN68186 (EMBL:AE016783) (176 aa) fasta scores: E(): 1.9e-07, 32.5% id in 200 aa
YP_049666.1	Similar to Burkholderia pseudomallei paraquat-inducible protein lpw206-207 SWALL:Q93M60 (EMBL:AY027530) (553 aa) fasta scores: E(): 1.3e-86, 45.97% id in 522 aa, and to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 8.2e-45, 29.69% id in 532 aa
YP_049667.1	Similar to Pseudomonas aeruginosa paraquat-inducible protein a SWALL:Q9APY1 (EMBL:AF241171) (237 aa) fasta scores: E(): 2.7e-27, 41.88% id in 191 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-26, 42.71% id in 199 aa
YP_049668.1	Similar to Ralstonia solanacearum probable transmembrane protein rsc0603 or rs04842 SWALL:Q8Y1T6 (EMBL:AL646060) (292 aa) fasta scores: E(): 4.1e-18, 32.27% id in 189 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein a pqia or pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.4e-07, 23.4% id in 188 aa
YP_049669.1	Similar to Ralstonia solanacearum probable lipoprotein rsc2561 or rs00746 SWALL:Q8XWB3 (EMBL:AL646070) (220 aa) fasta scores: E(): 2.1e-43, 56.22% id in 217 aa, and to Bradyrhizobium japonicum Blr1214 protein blr1214 SWALL:BAC46479 (EMBL:AP005939) (220 aa) fasta scores: E(): 9.6e-41, 54.58% id in 207 aa
YP_049670.1	Similar to Vibrio fischeri CheV SWALL:AAL86625 (EMBL:AY079167) (306 aa) fasta scores: E(): 1.6e-26, 34.36% id in 323 aa, and to Salmonella typhimurium chemotaxis signal transduction protein stm2314 SWALL:Q8ZNE6 (EMBL:AE008803) (333 aa) fasta scores: E(): 8.2e-81, 70.44% id in 318 aa
YP_049671.1	YghU; B2989; one of eight  glutathione transferase proteins from E. coli
YP_049672.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri threonine dehydratase catabolic TdcB or b3117 or c3875 or z4469 or ecs3997 or sf3157 SWALL:THD2_ECOLI (SWALL:P05792) (329 aa) fasta scores: E(): 9.6e-33, 38.14% id in 312 aa, and to Thermotoga maritima threonine dehydratase catabolic tm0356 SWALL:Q9WYJ1 (EMBL:AE001716) (401 aa) fasta scores: E(): 6.1e-41, 41.32% id in 317 aa
YP_049673.1	Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr1414 SWALL:BAC46679 (EMBL:AP005940) (100 aa) fasta scores: E(): 1e-13, 52.22% id in 90 aa, and to Rhizobium loti hypothetical protein Mll3509 mll3509 SWALL:Q98G33 (EMBL:AP003002) (100 aa) fasta scores: E(): 1.1e-15, 47.87% id in 94 aa
YP_049674.1	Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 5e-40, 31.1% id in 389 aa, and to Ralstonia solanacearum probable transport transmembrane protein rsc0216 or rs00648 SWALL:Q8Y2W6 (EMBL:AL646058) (409 aa) fasta scores: E(): 7.1e-61, 45.26% id in 380 aa
YP_049675.1	Similar to Rhizobium meliloti  transport protein r00217 or smc02892 SWALL:Q92SY1 (EMBL:AL591782) (492 aa) fasta scores: E(): 9.3e-32, 44.06% id in 438 aa, and to Rhizobium loti probable transmembrane efflux protein mlr1142 SWALL:Q98L80 (EMBL:AP002996) (490 aa) fasta scores: E(): 4.9e-27, 37.55% id in 466 aa
YP_049676.1	Similar to Rhizobium leguminosarum transcriptional regulator HmrR SWALL:HMMR_RHILV (SWALL:Q9X5V4) (129 aa) fasta scores: E(): 3.2e-07, 33.6% id in 125 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa5116 SWALL:Q9HU68 (EMBL:AE004924) (141 aa) fasta scores: E(): 1.4e-21, 54.03% id in 124 aa
YP_049677.1	no significant database matches
YP_049678.1	Weakly similar to Xylella fastidiosa hypothetical protein Xf2750 xf2750 SWALL:Q9P9X0 (EMBL:AE004081) (201 aa) fasta scores: E(): 6.5, 24.61% id in 195 aa
YP_049679.1	Similar to Yersinia pestis nucleoprotein/polynucleotide-associated enzyme y2589 SWALL:AAM86144 (EMBL:AE013861) (179 aa) fasta scores: E(): 8.1e-50, 93.29% id in 179 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein stm4192 or sty4409 SWALL:Q8XF14 (EMBL:AE008896) (179 aa) fasta scores: E(): 3.5e-48, 88.26% id in 179 aa
YP_049680.1	catalyzes the formation of 2-dehydropantoate from (R)-pantoate
YP_049681.1	Similar to Myxococcus xanthus CspB SWALL:Q9ZFK8 (EMBL:AF098529) (66 aa) fasta scores: E(): 0.057, 39.7% id in 68 aa, and to Yersinia pestis  cold-shock protein y1165 SWALL:AAM84742 (EMBL:AE013720) (163 aa) fasta scores: E(): 2.6e-35, 66.24% id in 157 aa
YP_049682.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein ymja or b1295 or sf1300 SWALL:YMJA_ECOLI (SWALL:P76036) (81 aa) fasta scores: E(): 1.5e-20, 72.84% id in 81 aa
YP_049683.1	Partial CDS. Similar to the N-terminal regions of Escherichia coli probable transposase for transposon tn903 SWALL:TRA2_ECOLI (SWALL:P03009) (307 aa) fasta scores: E(): 2.8e-09, 74.41% id in 43 aa, and to Bacteriophage HK022 is903 transposase SWALL:Q9MCT5 (EMBL:AF069308) (307 aa) fasta scores: E(): 2.8e-09, 74.41% id in 43 aa
YP_049684.1	Partial CDS. Similar to Salmonella typhimurium integrase protein stm0947 SWALL:Q8ZQE2 (EMBL:AE008740) (227 aa) fasta scores: E(): 0.0015, 57.89% id in 38 aa, and to Pseudomonas syringae ispsy11, transposase orfb pspto4511 SWALL:AAO57959 (EMBL:AE016872) (265 aa) fasta scores: E(): 0.03, 35.38% id in 65 aa
YP_049685.1	Similar to Anabaena sp. hypothetical protein Asl3923 SWALL:Q8YQB0 (EMBL:AP003594) (53 aa) fasta scores: E(): 1.3e-11, 63.63% id in 44 aa, and to Synechococcus elongatus Tsr2277 protein tsr2277 SWALL:Q8DGN9 (EMBL:AP005376) (51 aa) fasta scores: E(): 1.2e-10, 56.09% id in 41 aa
YP_049686.1	Similar to Pseudomonas putida conserved hypothetical protein pp2732 SWALL:AAN68340 (EMBL:AE016784) (508 aa) fasta scores: E(): 1.6e-149, 66.86% id in 507 aa, and to Caulobacter crescentus hypothetical protein Cc0646 SWALL:Q9AAF5 (EMBL:AE005740) (509 aa) fasta scores: E(): 9.5e-105, 50.39% id in 502 aa
YP_049687.1	Similar to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc2597 or rs00845 SWALL:Q8XW78 (EMBL:AL646070) (252 aa) fasta scores: E(): 7.9e-79, 84.92% id in 252 aa, and to Xanthomonas campestris reductase xcc3212 SWALL:Q8P5X1 (EMBL:AE012438) (276 aa) fasta scores: E(): 1.6e-41, 52.19% id in 251 aa
YP_049688.1	Similar to Sus scrofa glutathione transferase omega 1 gsto1 SWALL:GTO1_PIG (SWALL:Q9N1F5) (241 aa) fasta scores: E(): 4.1e-14, 29.29% id in 198 aa, and to Ralstonia solanacearum probable glutathione-s-transferase protein rsc2594 or rs00842 SWALL:Q8XW81 (EMBL:AL646070) (224 aa) fasta scores: E(): 3.2e-61, 70.08% id in 224 aa
YP_049689.1	Similar to Ralstonia solanacearum hypothetical protein rsc2590 or rs00838 SWALL:Q8XW85 (EMBL:AL646070) (128 aa) fasta scores: E(): 7.4e-27, 59.35% id in 123 aa, and to Caulobacter crescentus hypothetical protein Cc2961 SWALL:Q9A482 (EMBL:AE005960) (129 aa) fasta scores: E(): 0.0056, 34.14% id in 123 aa
YP_049690.1	similar to the DNA and RNA helicase superfamily II and eukaryotic DEAD family of helicases; longest known protein in E. coli
YP_049691.1	Similar to Rhizobium loti hypothetical protein Mlr0026 SWALL:Q98NQ9 (EMBL:AP002994) (107 aa) fasta scores: E(): 2.7e-08, 34.61% id in 104 aa, and to Caulobacter crescentus hypothetical protein Cc0401 SWALL:Q9AB33 (EMBL:AE005713) (127 aa) fasta scores: E(): 1e-06, 29.78% id in 94 aa
YP_049692.1	Similar over its C-terminal region to many including Salmonella typhimurium  cytoplasmic protein ybdf or stm0579 SWALL:Q8ZR44 (EMBL:AE008722) (122 aa) fasta scores: E(): 1.8e-09, 33.89% id in 118 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ybdf or b0579 or z0718 or ecs0617 SWALL:YBDF_ECOLI (SWALL:P39454) (122 aa) fasta scores: E(): 2.2e-07, 33.04% id in 115 aa
YP_049693.1	Similar to Streptomyces hygroscopicus acetyl-hydrolase Bah SWALL:BAH_STRHY (SWALL:Q01109) (299 aa) fasta scores: E(): 8.6e-34, 43.01% id in 265 aa, and to Streptomyces viridochromogenes N-acetylphosphinothricin-tripetide- deacetylase Dea SWALL:Q56171 (EMBL:X65195) (299 aa) fasta scores: E(): 1.7e-33, 43.34% id in 263 aa
YP_049694.1	Similar to Xanthomonas campestris transcriptional regulator xcc3932 SWALL:Q8P3Y5 (EMBL:AE012514) (317 aa) fasta scores: E(): 2.6e-22, 42.58% id in 310 aa
YP_049695.1	no significant database matches
YP_049696.1	Similar to Ralstonia solanacearum hypothetical protein rsc2592 or rs00840 SWALL:Q8XW83 (EMBL:AL646070) (118 aa) fasta scores: E(): 2.1e-19, 43.96% id in 116 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1254 SWALL:BAC13210 (EMBL:AP004597) (118 aa) fasta scores: E(): 2.9e-19, 41.02% id in 117 aa
YP_049697.1	Weakly similar to Thermoplasma volcanium hypothetical protein tv0230 or tvg0239138 SWALL:Q97C74 (EMBL:AP000991) (511 aa) fasta scores: E(): 1.4e-09, 22.16% id in 582 aa, and to Xanthomonas axonopodis hypothetical protein Xac2444 SWALL:Q8PJT6 (EMBL:AE011881) (705 aa) fasta scores: E(): 5.9e-09, 24.46% id in 556 aa
YP_049698.1	no significant database matches
YP_049699.1	Similar to Bacillus anthracis pxo2-73 bxb0100 SWALL:Q9RMW1 (EMBL:AF188935) (541 aa) fasta scores: E(): 2.2e-22, 31.18% id in 356 aa, and to Streptococcus agalactiae protein of unknown function sag1992 SWALL:AAN00852 (EMBL:AE014281) (518 aa) fasta scores: E(): 8.7e-09, 32.91% id in 237 aa
YP_049700.1	Similar to Escherichia coli ArdC antirestriction protein ArdC SWALL:Q9R2K1 (EMBL:AF143206) (297 aa) fasta scores: E(): 2.2e-39, 47.69% id in 239 aa
YP_049701.1	Partial CDS. Similar to the C-terminal regions of Salmonella typhi is30 transposase r0046 SWALL:AAF69884 (EMBL:AF250878) (383 aa) fasta scores: E(): 2.5e-31, 51.22% id in 164 aa, and to Escherichia coli transposase insi for insertion sequence element is30b/c/d (insi1 or b0256) and (insi2 or b1404) and (insi3 or b4284) SWALL:INSI_ECOLI (SWALL:P37246) (383 aa) fasta scores: E(): 2.5e-31, 51.22% id in 164 aa
YP_049702.1	Similar to Pseudomonas fluorescens  transcriptional regulator SWALL:AAN32873 (EMBL:AF461725) (238 aa) fasta scores: E(): 4.6e-57, 60.92% id in 238 aa, and to Ralstonia solanacearum probable transcription regulator transcription regulator protein rsp1593 or rs02150 SWALL:Q8XPP5 (EMBL:AL646085) (296 aa) fasta scores: E(): 6e-39, 40.13% id in 294 aa. Also similar to ECA2976 (96.026% id. in 302 aa overlap)
YP_049703.1	Similar to Escherichia coli, and Shigella flexneri arsenate reductase ArsC or ArsG or b3503 or sf3536 SWALL:ARSC_ECOLI (SWALL:P37311) (141 aa) fasta scores: E(): 1.1e-44, 81.56% id in 141 aa
YP_049704.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri arsenical pump membrane protein ArsB or ArsF or b3502 or z4904 or ecs4374 or sf3535 SWALL:ARSB_ECOLI (SWALL:P37310) (429 aa) fasta scores: E(): 1.3e-139, 85.54% id in 429 aa
YP_049705.1	regulates the expression of of the arsRBC involved in resistance to arsenic
YP_049706.1	Similar to Yersinia enterocolitica ArsH SWALL:P74987 (EMBL:U58366) (232 aa) fasta scores: E(): 2.8e-86, 91.81% id in 232 aa, and to Salmonella typhimurium ArsH protein SWALL:Q8L245 (EMBL:AP005147) (216 aa) fasta scores: E(): 6.4e-69, 80.09% id in 211 aa
YP_049707.1	no significant database matches
YP_049708.1	Similar to Enterobacter cloacae MobC protein SWALL:Q9REB5 (EMBL:AJ224861) (243 aa) fasta scores: E(): 7.6e-14, 31.05% id in 219 aa
YP_049709.1	Similar to Enterobacter cloacae MobB protein SWALL:Q9REB6 (EMBL:AJ224861) (653 aa) fasta scores: E(): 1.1e-40, 29.89% id in 582 aa, and to Escherichia coli mobilization protein A MobA or B SWALL:MBA1_ECOLI (SWALL:P08098) (529 aa) fasta scores: E(): 1.8e-18, 28.96% id in 366 aa
YP_049710.1	no significant database matches
YP_049711.1	no significant database matches
YP_049712.1	Similar to Escherichia coli, and Salmonella typhimurium pkm101 conjugation proteins KikA SWALL:Q46691 (EMBL:U09868) (104 aa) fasta scores: E(): 5.5e-16, 49.47% id in 95 aa
YP_049713.1	Similar to Escherichia coli Virb11 protein VirB11 SWALL:Q91UW6 (EMBL:AJ297913) (355 aa) fasta scores: E(): 1e-37, 38.06% id in 331 aa, and to Actinobacillus actinomycetemcomitans transport associated protein 9 tag9 SWALL:Q9AGG6 (EMBL:AF332996) (340 aa) fasta scores: E(): 7.1e-48, 46.01% id in 326 aa
YP_049714.1	Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa
YP_049715.1	Similar to Escherichia coli VirB9 protein VirB9 SWALL:Q91UW8 (EMBL:AJ297913) (290 aa) fasta scores: E(): 2.5e-15, 32.52% id in 289 aa
YP_049716.1	Similar to Escherichia coli VirB8 protein VirB8 SWALL:Q91UW9 (EMBL:AJ297913) (236 aa) fasta scores: E(): 2.8e-14, 29.46% id in 224 aa
YP_049717.1	Similar to Escherichia coli VirB7 protein VirB7 SWALL:Q91UX0 (EMBL:AJ297913) (54 aa) fasta scores: E(): 0.7, 40% id in 40 aa
YP_049718.1	Similar to Escherichia coli VirB6 protein VirB6 SWALL:Q91UX1 (EMBL:AJ297913) (360 aa) fasta scores: E(): 9e-06, 21.12% id in 355 aa
YP_049719.1	Similar to Yersinia pestis Orf4 SWALL:Q9RPN3 (EMBL:AF152923) (90 aa) fasta scores: E(): 4.9e-05, 40.29% id in 67 aa, and to Escherichia coli Eex protein SWALL:Q9EUF6 (EMBL:AJ006342) (86 aa) fasta scores: E(): 0.0002, 30.38% id in 79 aa
YP_049720.1	Similar to Escherichia coli VirB5 protein VirB5 SWALL:Q91UX3 (EMBL:AJ297913) (239 aa) fasta scores: E(): 0.00064, 22.88% id in 236 aa
YP_049721.1	Similar to Escherichia coli VirB4 protein VirB4 SWALL:Q91UX4 (EMBL:AJ297913) (826 aa) fasta scores: E(): 2.4e-90, 34.71% id in 818 aa
YP_049722.1	Similar to Escherichia coli VirB2 protein VirB2 SWALL:Q91UX6 (EMBL:AJ297913) (102 aa) fasta scores: E(): 0.0022, 30.66% id in 75 aa
YP_049723.1	Similar to Escherichia coli VirB1 protein VirB1 SWALL:Q91UX8 (EMBL:AJ297913) (253 aa) fasta scores: E(): 1.1e-12, 32.27% id in 220 aa
YP_049724.1	no significant database matches
YP_049725.1	no significant database matches
YP_049726.1	Similar to Escherichia coli TraR protein TraR SWALL:TRAR_ECOLI (SWALL:P41065) (73 aa) fasta scores: E(): 1e-06, 41.66% id in 72 aa
YP_049727.1	Similar to Yersinia pestis orf 77 ypo1902 or y2407 SWALL:AAM85965 (EMBL:AL031866) (193 aa) fasta scores: E(): 2.3e-46, 62.17% id in 193 aa, and to Yersinia pseudotuberculosis hypothetical 18.9 kDa protein SWALL:Q9X9G3 (EMBL:AJ236887) (166 aa) fasta scores: E(): 1.6e-38, 62.04% id in 166 aa
YP_049728.1	Similar to Escherichia coli prophage cp4-57 regulatory protein AlpA or Alp or b2624 SWALL:ALPA_ECOLI (SWALL:P33997) (70 aa) fasta scores: E(): 0.00017, 37.28% id in 59 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 4.7e-21, 86.88% id in 61 aa
YP_049729.1	Similar to Yersinia pestis orf 74 SWALL:Q9R7V2 (EMBL:AL031866) (168 aa) fasta scores: E(): 2.1e-05, 36.14% id in 83 aa, and to Yersinia pseudotuberculosis hypothetical 35.5 kDa protein SWALL:Q9X9G6 (EMBL:AJ236887) (308 aa) fasta scores: E(): 5.4e-14, 39% id in 141 aa
YP_049730.1	Similar to Pseudomonas putida PobR protein SWALL:Q9R9T2 (EMBL:AJ251792) (292 aa) fasta scores: E(): 1.4e-12, 29.16% id in 240 aa, and to Xanthomonas campestris transcriptional regulator xcc3932 SWALL:Q8P3Y5 (EMBL:AE012514) (317 aa) fasta scores: E(): 2.4e-17, 36.59% id in 276 aa
YP_049731.1	no significant database matches
YP_049732.1	Similar to Escherichia coli O6 hypothetical protein c2416 SWALL:AAN80875 (EMBL:AE016762) (297 aa) fasta scores: E(): 4.4e-35, 38.65% id in 282 aa
YP_049733.1	Weakly similar to Pyrococcus horikoshii hypothetical protein Ph1126 ph1126 SWALL:O58853 (EMBL:AP000005) (207 aa) fasta scores: E(): 4.7, 31.53% id in 111 aa
YP_049734.1	no significant database matches
YP_049735.1	no significant database matches
YP_049736.1	no significant database matches
YP_049737.1	Similar to Erwinia chrysanthemi Hns regulatory protein hnS SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 0.039, 33.75% id in 80 aa, and to Escherichia coli O6 hypothetical protein c2413 SWALL:Q8FGG4 (EMBL:AE016762) (80 aa) fasta scores: E(): 3.3e-18, 75.64% id in 78 aa
YP_049738.1	no significant database matches
YP_049739.1	Similar to Escherichia coli O6 hypothetical protein c2410 SWALL:AAN80869 (EMBL:AE016762) (159 aa) fasta scores: E(): 4.3e-31, 63.52% id in 159 aa
YP_049740.1	no significant database matches
YP_049741.1	no significant database matches
YP_049742.1	no significant database matches
YP_049743.1	no significant database matches
YP_049744.1	Similar to Zymomonas mobilis 20.9 kDa protein SWALL:21KD_ZYMMO (SWALL:P15256) (184 aa) fasta scores: E(): 1.9e-11, 31.97% id in 172 aa, and to Pseudoalteromonas sp. PS1M3 replication protein Rep SWALL:Q9LCJ6 (EMBL:AB022096) (193 aa) fasta scores: E(): 7.1e-11, 32.95% id in 176 aa
YP_049745.1	Similar to Escherichia coli O157:H7 hypothetical protein z5954 or ecs5314 SWALL:Q8XB64 (EMBL:AE005667) (180 aa) fasta scores: E(): 9.5e-40, 55% id in 180 aa
YP_049746.1	no significant database matches
YP_049747.1	no significant database matches
YP_049748.1	no significant database matches
YP_049749.1	no significant database matches
YP_049750.1	no significant database matches
YP_049751.1	Similar to Yersinia enterocolitica IS1400 transposase B Trp1400B SWALL:Q9X9H9 (EMBL:AJ132945) (294 aa) fasta scores: E(): 1.2e-64, 61.83% id in 262 aa, and to Desulfovibrio vulgaris transposase orfb SWALL:O31218 (EMBL:AF034211) (310 aa) fasta scores: E(): 1.3e-64, 59.61% id in 260 aa
YP_049752.1	Similar to Escherichia coli O6 transposase c2472 SWALL:AAN80931 (EMBL:AE016762) (88 aa) fasta scores: E(): 2e-22, 72.72% id in 88 aa, and to Yersinia pestis, and Yersinia pseudotuberculosis low calcium response locus protein S LcrS or ypcd1.63 or y5015 or y0018 SWALL:LCRS_YERPE (SWALL:Q00931) (88 aa) fasta scores: E(): 1.7e-29, 96.59% id in 88 aa
YP_049753.1	Similar to Escherichia coli O157:H7 z3937 protein z3937 or ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 aa) fasta scores: E(): 4.5e-17, 44.82% id in 116 aa
YP_049754.1	Similar to Escherichia coli O6 hypothetical protein c2401 SWALL:AAN80860 (EMBL:AE016762) (191 aa) fasta scores: E(): 1.8e-35, 55.97% id in 184 aa
YP_049755.1	no significant database matches
YP_049756.1	no significant database matches
YP_049757.1	no significant database matches
YP_049758.1	Similar to Lactococcus lactis nicking enzyme SWALL:O87207 (EMBL:AE001272) (680 aa) fasta scores: E(): 2.9e-20, 33.77% id in 302 aa, and to Escherichia coli O6 hypothetical protein c2397 SWALL:AAN80856 (EMBL:AE016762) (500 aa) fasta scores: E(): 2.9e-119, 64.98% id in 477 aa, and to Thiobacillus ferrooxidans mobilization protein MobL mobL SWALL:MOBL_THIFE (SWALL:P20085) (378 aa) fasta scores: E(): 3.7e-09, 28.23% id in 294 aa
YP_049759.1	no significant database matches
YP_049760.1	no significant database matches
YP_049761.1	no significant database matches
YP_049762.1	Similar to Escherichia coli O6 hypothetical protein c2396 SWALL:AAN80855 (EMBL:AE016762) (104 aa) fasta scores: E(): 6.6e-10, 47.87% id in 94 aa
YP_049763.1	no significant database matches
YP_049764.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA-binding protein H-NS SWALL:HNS_ECOLI (SWALL:P08936) (136 aa) fasta scores: E(): 3.4e-22, 61.19% id in 134 aa, and to Erwinia chrysanthemi Hns regulatory protein hnS SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 1.5e-22, 61.65% id in 133 aa. Also similar to ECA2893 (87.970% id in 133 aa overlap) and to ECA2328 (61.654% id in 133 aa overlap)
YP_049765.1	no significant database matches
YP_049766.1	Similar to Escherichia coli O6  type IV pilin protein precursor c2395 SWALL:Q8CVY4 (EMBL:AE016762) (185 aa) fasta scores: E(): 5e-33, 52.68% id in 186 aa
YP_049767.1	Similar to Escherichia coli O6 PilV-like protein c2394 SWALL:AAN80853 (EMBL:AE016762) (487 aa) fasta scores: E(): 4.2e-75, 52.14% id in 443 aa, and to Salmonella typhimurium type IV prepilin pilV SWALL:BAB91683 (EMBL:AP005147) (474 aa) fasta scores: E(): 2e-06, 26.94% id in 464 aa
YP_049768.1	Similar to Yersinia pestis hypothetical protein ypo0873 or y3255 SWALL:Q8ZHL8 (EMBL:AJ414145) (512 aa) fasta scores: E(): 4.6e-50, 42.01% id in 545 aa
YP_049769.1	Similar to Neisseria meningitidis hypothetical protein Nma0318 SWALL:Q9JWL2 (EMBL:AL162752) (68 aa) fasta scores: E(): 0.00015, 42.59% id in 54 aa, and to Clostridium perfringens hypothetical protein Cpe0646 SWALL:Q8XMP2 (EMBL:AP003187) (51 aa) fasta scores: E(): 4.2, 28.84% id in 52 aa
YP_049770.1	Similar to the C-terminal region of Bifidobacterium longum probable sugar permease of abc transporter system Bl1332 SWALL:AAN25132 (EMBL:UNKNOWN ACCESSION) (285 aa) fasta scores: E(): 2, 25.88% id in 170 aa
YP_049771.1	Similar to Yersinia pestis hypothetical y3270 SWALL:AAM86820 (EMBL:AE013928) (93 aa) fasta scores: E(): 1.2e-10, 46.57% id in 73 aa
YP_049772.1	no significant database matches
YP_049773.1	no significant database matches
YP_049774.1	Partial CDS. Similar to the C-terminal regions of many phage integrases including Escherichia coli prophage P4 integrase IntB or b4271 SWALL:INTB_ECOLI (SWALL:P39347) (396 aa) fasta scores: E(): 3.6e-13, 70.21% id in 47 aa
YP_049775.1	Similar to Pyrococcus furiosus hypothetical protein Pf0664 SWALL:Q8U312 (EMBL:AE010187) (102 aa) fasta scores: E(): 2.1e-05, 31.81% id in 88 aa
YP_049776.1	Partial CDS. Similar to the C-terminal regions of several phage integrases including Escherichia coli O6 P4-family integrase c2392 SWALL:AAN80851 (EMBL:AE016762) (406 aa) fasta scores: E(): 7.5e-08, 52.85% id in 70 aa, and to Xanthomonas axonopodis phage-related integrase IntA or xac1664 SWALL:Q8PLX5 (EMBL:AE011798) (396 aa) fasta scores: E(): 0.0014, 59.09% id in 44 aa
YP_049777.1	MazF; endoribonuclease; toxin of the ChpA-ChpR toxin-antitoxin system
YP_049778.1	Similar to Escherichia coli, and Escherichia coli O157:H7 PemI-like protein 1 ChpR or MazE or ChpaI or b2783 or z4098 or ecs3643 SWALL:CHPR_ECOLI (SWALL:P18534) (82 aa) fasta scores: E(): 4.6e-09, 38.55% id in 83 aa, and to Bacillus halodurans suppressor of ppgpp-regulated growth inhibitor bh3720 SWALL:Q9K6K9 (EMBL:AP001519) (81 aa) fasta scores: E(): 6.1e-05, 38.75% id in 80 aa
YP_049779.1	no significant database matches
YP_049780.1	Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 2.4e-97, 58.15% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 2.4e-90, 58.45% id in 402 aa
YP_049781.1	Similar to Yersinia pestis hypothetical protein ypo1732 or y2576 SWALL:Q8ZFH7 (EMBL:AJ414150) (270 aa) fasta scores: E(): 5.5e-74, 65.64% id in 262 aa, and to Escherichia coli hypothetical protein yeei or b1976 SWALL:YEEI_ECOLI (SWALL:P76346) (265 aa) fasta scores: E(): 1.8e-67, 61.88% id in 265 aa
YP_049782.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yddv or b1490 or z2219 or ecs2095 SWALL:YDDV_ECOLI (SWALL:P77793) (460 aa) fasta scores: E(): 3.2e-64, 42.62% id in 427 aa, and to Shigella flexneri orf, conserved hypothetical protein yddv or sf1736.1 SWALL:AAN43312 (EMBL:AE015194) (381 aa) fasta scores: E(): 7.6e-44, 40.85% id in 328 aa
YP_049783.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DsrB protein dsrb or b1952 or c2370 or z3042 or ecs2691 SWALL:DSRB_ECOLI (SWALL:P40678) (62 aa) fasta scores: E(): 3.3e-15, 72.88% id in 59 aa
YP_049784.1	Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 5.4e-99, 59.96% id in 537 aa
YP_049785.1	Similar to Salmonella typhimurium  permease yifz or stm4395 SWALL:Q8ZK79 (EMBL:AE008906) (308 aa) fasta scores: E(): 5.9e-80, 69.79% id in 298 aa, and to Salmonella typhi  membrane protein sty4751 SWALL:Q8Z162 (EMBL:AL627283) (308 aa) fasta scores: E(): 1.1e-79, 69.46% id in 298 aa
YP_049786.1	with FlhC is involved in the activation of class 2 flagellar genes and is involved in the regulation of a number of other genetic systems
YP_049787.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_049788.1	With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_049789.1	Similar to Escherichia coli, and Escherichia coli O157:H7 chemotaxis MotB protein MotB or b1889 or z2943 or ecs2599 SWALL:MOTB_ECOLI (SWALL:P09349) (308 aa) fasta scores: E(): 1.1e-64, 64.51% id in 310 aa
YP_049790.1	chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY; sensory histidine kinase/signal sensing protein; CheA is the histidine kinase component
YP_049791.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri chemotaxis protein CheW or b1887 or c2302 or z2941 or ecs2597 or sf1936 SWALL:CHEW_ECOLI (SWALL:P07365) (167 aa) fasta scores: E(): 3.6e-50, 86.33% id in 161 aa
YP_049792.1	Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 1.3e-112, 63.81% id in 561 aa
YP_049793.1	methylates the MCP
YP_049794.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_049795.1	chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble
YP_049796.1	cytosolic phosphatase which functions in the chemotaxis signal transduction complex by controlling the level of phosphorylated CheY through dephosphorylation
YP_049797.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_049798.1	membrane protein involved in the flagellar export apparatus
YP_049799.1	Similar to Escherichia coli flagellar protein FlhE precursor FlhE or b1878 SWALL:FLHE_ECOLI (SWALL:P76297) (130 aa) fasta scores: E(): 1.2e-12, 38.68% id in 137 aa
YP_049800.1	Similar to Salmonella typhimurium, and Salmonella typhi flagella synthesis protein FlgN or stm1171 or sty1210 SWALL:FLGN_SALTY (SWALL:P37406) (140 aa) fasta scores: E(): 2.4e-14, 38.88% id in 144 aa, and to Yersinia enterocolitica flagella synthesis protein FlgN SWALL:FLGN_YEREN (SWALL:Q56854) (147 aa) fasta scores: E(): 6.2e-22, 46.85% id in 143 aa
YP_049801.1	regulates the flagellar specific sigma28 transcription factor
YP_049802.1	required for the assembly of the flagellar basal body P-ring
YP_049803.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella
YP_049804.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_049805.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production
YP_049806.1	the hook connects flagellar basal body to the flagellar filament
YP_049807.1	FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod
YP_049808.1	makes up the distal portion of the flagellar basal body rod
YP_049809.1	part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod
YP_049810.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_049811.1	Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space
YP_049812.1	with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook
YP_049813.1	with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of this and other flagellar genes
YP_049814.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_049815.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_049816.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_049817.1	Previously sequenced as Erwinia carotovora MopB protein mopB SWALL:MOPB_ERWCA (SWALL:P34199) (140 aa) fasta scores: E(): 2.5e-48, 95% id in 140 aa, and to Salmonella typhimurium, and Salmonella typhi flagellar protein flio flio or flbd or flap or stm1978 or sty2186 SWALL:FLIO_SALTY (SWALL:P54699) (125 aa) fasta scores: E(): 2.9e-14, 45% id in 120 aa
YP_049818.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_049819.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_049820.1	interacts with cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring
YP_049821.1	Similar to Salmonella typhimurium flagellar hook-length control protein FliK or FlaE or FlaR or stm1974 SWALL:FLIK_SALTY (SWALL:P26416) (405 aa) fasta scores: E(): 1.9e-22, 35.3% id in 405 aa
YP_049822.1	rod/hook and filament chaperone
YP_049823.1	involved in type III protein export during flagellum assembly
YP_049824.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_049825.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_049826.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_049827.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_049828.1	binds flagellar cap subunits (FliD) and seems to prevents their oligomerization prior to its translocation through the flagellum-specific type III export pathway; acts as a repressor of flagellar class 2 operons by preventing FlhD2C2 to bind the promoter and inhibiting the FlhD2C2-dependent transcription; member of the type III cytoplasmic chaperone family
YP_049829.1	flagellin specific chaperone
YP_049830.1	involved in flagellin assembly
YP_049831.1	Similar to Erwinia chrysanthemi flagellin FliC SWALL:Q8RST5 (EMBL:AJ430202) (280 aa) fasta scores: E(): 3.2e-36, 65.29% id in 291 aa, and to Pseudomonas fluorescens flagellin FliC SWALL:Q8VS56 (EMBL:AF399739) (283 aa) fasta scores: E(): 3.4e-39, 50.85% id in 291 aa
YP_049832.1	no significant database matches
YP_049833.1	Similar to Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1e-78, 59.94% id in 362 aa, and to Xanthomonas axonopodis nucleotide sugar transaminase VioA or xac1966 SWALL:Q8PL40 (EMBL:AE011831) (369 aa) fasta scores: E(): 9.2e-87, 61.43% id in 363 aa
YP_049834.1	Similar to Shewanella oneidensis conserved hypothetical protein so3184 SWALL:AAN56184 (EMBL:AE015756) (240 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa, and to Bordetella bronchiseptica hypothetical 27.4 kDa protein bblps1.06 SWALL:O87979 (EMBL:AJ007747) (239 aa) fasta scores: E(): 6.7e-15, 31.03% id in 232 aa
YP_049835.1	Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 2.3e-21, 29.74% id in 316 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 1.6e-12, 34.82% id in 313 aa
YP_049836.1	Similar to Xanthomonas axonopodis hypothetical protein Xac1689 SWALL:Q8PLV0 (EMBL:AE011801) (317 aa) fasta scores: E(): 3.7e-11, 31.67% id in 322 aa, and to Mycobacterium tuberculosis hypothetical protein rv1502 or mt1551 or mtcy277.24 SWALL:YF02_MYCTU (SWALL:P71783) (299 aa) fasta scores: E(): 0.0028, 31.56% id in 320 aa
YP_049837.1	Similar to Lactococcus lactis acetyltransferase ycjc or ll0293 SWALL:Q9CIR3 (EMBL:AE006266) (189 aa) fasta scores: E(): 0.0034, 32.46% id in 77 aa, and to Haemophilus influenzae ribosomal-protein-alanine acetyltransferase rimi or hi0010 SWALL:RIMI_HAEIN (SWALL:P44305) (146 aa) fasta scores: E(): 0.053, 27.55% id in 127 aa
YP_049838.1	Similar to Synechocystis sp. hypothetical protein Slr1618 SWALL:P72896 (EMBL:D90901) (261 aa) fasta scores: E(): 5e-13, 26.69% id in 236 aa
YP_049839.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes
YP_049840.1	expression activator of the class 2 type of flagellar operons, essential to achieve maximal cell motility; activator of type 1 fimbrial gene expression; cell density-responsive regulator; FliZ in Salmonella typhimurium induces HilA, an activator of invasion genes necessary to achieve full virulence
YP_049841.1	Similar to Escherichia coli, and Escherichia coli O157:H7 phoh protein PhoH or PsiH or b1020 or z1522 or ecs1266 SWALL:PHOH_ECOLI (SWALL:P31544) (354 aa) fasta scores: E(): 1.1e-85, 86.97% id in 261 aa
YP_049842.1	Similar to Streptococcus agalactiae hypothetical protein gbs1892 SWALL:CAD47551 (EMBL:AL766854) (212 aa) fasta scores: E(): 1.6e-50, 62.08% id in 211 aa, and to Clostridium acetobutylicum predicted sugar-phosphate isomerase cac2606 SWALL:Q97FX0 (EMBL:AE007758) (213 aa) fasta scores: E(): 4.8e-56, 68.24% id in 211 aa
YP_049843.1	proton-motive-force-driven choline transporter
YP_049844.1	HTH-type; bet1; Repressor involved in choline regulation of the bet genes
YP_049845.1	catalyzes the formation of betaine from betaine aldehyde
YP_049846.1	catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine
YP_049847.1	Similar to Escherichia coli O157:H7 orf, hypothetical protein yebe or z2897 or ecs2556 SWALL:Q8XCK2 (EMBL:AE005407) (219 aa) fasta scores: E(): 5e-42, 57% id in 214 aa, and to Shigella flexneri orf, conserved hypothetical protein yebe or sf1857 SWALL:AAN43415 (EMBL:AE015204) (219 aa) fasta scores: E(): 3.1e-41, 56.07% id in 214 aa
YP_049848.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_049849.1	Similar to Escherichia coli  protease La homolog ycbz or b0955 SWALL:LONH_ECOLI (SWALL:P75867) (586 aa) fasta scores: E(): 3e-130, 54.75% id in 579 aa, and to Yersinia pestis  lon protease ypo1431 or y2739 SWALL:Q8ZG79 (EMBL:AJ414148) (590 aa) fasta scores: E(): 4.3e-167, 67.47% id in 575 aa
YP_049850.1	Similar to Salmonella typhimurium  cytoplasmic protein ycbg or stm1069 SWALL:Q8ZQ68 (EMBL:AE008746) (150 aa) fasta scores: E(): 2.9e-43, 79.19% id in 149 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ycbg or b0956 or z1306 or ecs1040 SWALL:YCBG_ECOLI (SWALL:P45569) (150 aa) fasta scores: E(): 2.6e-42, 78% id in 150 aa
YP_049851.1	OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d
YP_049852.1	Similar to Escherichia coli, and Escherichia coli O157:H7 cell division inhibitor SulA or SfiA or b0958 or z1308 or ecs1042 SWALL:SULA_ECOLI (SWALL:P08846) (169 aa) fasta scores: E(): 2.3e-31, 57.83% id in 166 aa
YP_049853.1	Similar to Yersinia pestis hypothetical protein Ypo1437 SWALL:Q8ZG75 (EMBL:AJ414148) (211 aa) fasta scores: E(): 7.1e-38, 53.36% id in 208 aa, and to Escherichia coli hypothetical protein yccr or b0959 SWALL:YCCR_ECOLI (SWALL:P75869) (209 aa) fasta scores: E(): 9.7e-27, 42.78% id in 194 aa
YP_049854.1	Similar to Yersinia pestis  membrane protein ypo1438 or y2732 SWALL:AAM86284 (EMBL:AJ414148) (712 aa) fasta scores: E(): 0, 75.03% id in 709 aa, and to Shigella flexneri orf, conserved hypothetical protein yccs or sf0962 SWALL:AAN42590 (EMBL:AE015125) (721 aa) fasta scores: E(): 5.4e-206, 71% id in 707 aa
YP_049855.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yccf or stm1074 or sty1096 SWALL:Q8XGG4 (EMBL:AE008746) (148 aa) fasta scores: E(): 8.5e-52, 82.99% id in 147 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yccf or b0961 or sf0963 SWALL:YCCF_ECOLI (SWALL:P37065) (148 aa) fasta scores: E(): 1.4e-51, 83.67% id in 147 aa
YP_049856.1	catalyzes the ATP-dependent unwinding of duplex DNA in the 3' to 5' direction with respect to the bound single strand
YP_049857.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_049858.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycct precursor ycct or b0964 or c1101 or z1315 or ecs1048 or sf0966 SWALL:YCCT_ECOLI (SWALL:P75873) (220 aa) fasta scores: E(): 1.1e-16, 35.63% id in 174 aa, and to Yersinia pestis  exported protein ypo1442 or y2728 SWALL:AAM86280 (EMBL:AJ414148) (226 aa) fasta scores: E(): 2.6e-16, 42.85% id in 168 aa
YP_049859.1	Similar to Yersinia pestis hypothetical protein ypo1443 or y2727 SWALL:AAM86279 (EMBL:AJ414148) (138 aa) fasta scores: E(): 1.5e-35, 75.18% id in 137 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein stm1078 or sty1101 SWALL:Q8XGM9 (EMBL:AE008747) (138 aa) fasta scores: E(): 1.8e-34, 72.99% id in 137 aa
YP_049860.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yccv or stm1079 or sty1102 SWALL:Q8XFC1 (EMBL:AE008747) (105 aa) fasta scores: E(): 1.5e-22, 59.04% id in 105 aa, and to Yersinia pestis hypothetical protein ypo1444 or y2726 SWALL:AAM86278 (EMBL:AJ414148) (113 aa) fasta scores: E(): 1e-21, 60% id in 105 aa
YP_049861.1	Similar to Escherichia coli, and Escherichia coli O157:H7  acylphosphatase yccx or b0968 or z1320 or ecs1052 SWALL:ACYP_ECOLI (SWALL:P75877) (92 aa) fasta scores: E(): 4.4e-18, 61.95% id in 92 aa
YP_049862.1	Similar to Yersinia pestis  sulfite reductase y2723 SWALL:AAM86275 (EMBL:AE013875) (109 aa) fasta scores: E(): 1.1e-38, 92.66% id in 109 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein ycck ycck or b0969 or sf0971 SWALL:YCCK_ECOLI (SWALL:P45572) (109 aa) fasta scores: E(): 1.6e-32, 78.89% id in 109 aa
YP_049863.1	Similar to Salmonella typhi  membrane protein sty1112 SWALL:Q8Z7R5 (EMBL:AL627269) (219 aa) fasta scores: E(): 2.3e-60, 77.16% id in 219 aa, and to Escherichia coli O157:H7  carrier/transport protein ycca or z1322 or ecs1054 SWALL:Q8XD81 (EMBL:AE005287) (219 aa) fasta scores: E(): 4e-60, 76.25% id in 219 aa
YP_049864.1	Similar to Salmonella typhi hypothetical protein Sty1854 SWALL:Q8Z6D3 (EMBL:AL627271) (82 aa) fasta scores: E(): 0.0033, 40% id in 60 aa, and to Salmonella typhimurium  cytoplasmic protein stm1267 SWALL:Q8ZPX7 (EMBL:AE008755) (82 aa) fasta scores: E(): 0.0024, 40% id in 60 aa
YP_049865.1	no significant database matches
YP_049866.1	Similar to Anabaena sp. hypothetical protein Alr2015 SWALL:Q8YVG3 (EMBL:AP003587) (143 aa) fasta scores: E(): 3.7e-15, 38.93% id in 131 aa, and to Bradyrhizobium japonicum Blr7631 protein blr7631 SWALL:BAC52896 (EMBL:AP005962) (172 aa) fasta scores: E(): 3.2e-13, 43.26% id in 141 aa
YP_049867.1	Similar to Lactococcus lactis hypothetical protein yvea or ll2054 SWALL:Q9CDZ6 (EMBL:AE006436) (176 aa) fasta scores: E(): 5.4e-12, 33.53% id in 167 aa, and to Clostridium acetobutylicum amidase from nicotinamidase family cac3465 SWALL:Q97DL0 (EMBL:AE007844) (178 aa) fasta scores: E(): 1.5e-09, 30.23% id in 172 aa
YP_049868.1	Similar to Bacteroides thetaiotaomicron acetyltransferase, bt1464 SWALL:AAO76571 (EMBL:AE016931) (152 aa) fasta scores: E(): 3.3e-31, 50.68% id in 146 aa, and to Lactococcus lactis unknown protein yuid or ll2008 SWALL:Q9CE40 (EMBL:AE006430) (152 aa) fasta scores: E(): 6.2e-31, 50.34% id in 147 aa
YP_049869.1	Similar to Escherichia coli unknown protein from 2d-page ybdq or b0607 SWALL:UP12_ECOLI (SWALL:P39177) (142 aa) fasta scores: E(): 4e-19, 46.52% id in 144 aa, and to Shigella flexneri orf, conserved hypothetical protein ybdq or sf0526 SWALL:AAN42172 (EMBL:AE015084) (142 aa) fasta scores: E(): 4.6e-19, 46.52% id in 144 aa
YP_049870.1	Similar to Rhizobium meliloti hypothetical protein r00856 or smc00850 SWALL:Q92RL1 (EMBL:AL591785) (172 aa) fasta scores: E(): 9.4e-29, 51.28% id in 156 aa, and to Pseudomonas putida conserved hypothetical protein pp5158 SWALL:AAN70723 (EMBL:AE016793) (167 aa) fasta scores: E(): 5.6e-23, 43.7% id in 151 aa
YP_049871.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yjdo or b4128.1 or c5136 or z5731 or ecs5110.1 SWALL:YJDO_ECOLI (SWALL:P58038) (57 aa) fasta scores: E(): 1.8e-05, 42.3% id in 52 aa, and to Shigella flexneri orf, conserved hypothetical protein ydcx or sf1772 SWALL:AAN43343 (EMBL:AE015197) (82 aa) fasta scores: E(): 3e-06, 40% id in 60 aa
YP_049872.1	Similar to Escherichia coli O157:H7 hypothetical protein z2994 or ecs2649 SWALL:Q8XBD8 (EMBL:AE005414) (130 aa) fasta scores: E(): 2.9e-14, 53.19% id in 94 aa
YP_049873.1	Similar to Yersinia pestis hypothetical protein ypo2226 or y2068 SWALL:AAM85632 (EMBL:AJ414151) (100 aa) fasta scores: E(): 1.5e-11, 54% id in 100 aa
YP_049874.1	Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 9.1e-53, 40.82% id in 556 aa
YP_049875.1	Similar to Corynebacterium glutamicum uncharacterized iron-regulated membrane protein cgl2326 SWALL:Q8NN80 (EMBL:AP005281) (475 aa) fasta scores: E(): 3.2e-31, 36.8% id in 451 aa, and to Streptomyces coelicolor  integral membrane protein sco0863 or scm2.16C SWALL:Q9RCU8 (EMBL:AL939107) (485 aa) fasta scores: E(): 1.6e-21, 39.44% id in 464 aa
YP_049876.1	no significant database matches
YP_049877.1	involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan
YP_049878.1	necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space
YP_049879.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA
YP_049880.1	Similar to Xanthomonas axonopodis fmn oxidoreductase frp or xac0321 SWALL:Q8PQK2 (EMBL:AE011657) (365 aa) fasta scores: E(): 1.4e-86, 62.53% id in 363 aa, and to Ralstonia solanacearum  NADH-dependent flavin oxidoreductase protein rsc0702 or rs01607 SWALL:Q8Y1I8 (EMBL:AL646060) (370 aa) fasta scores: E(): 1.8e-79, 56.63% id in 362 aa
YP_049881.1	Similar to Yersinia pestis hypothetical protein ypo2451/y1738 ypo2451 or y1738 SWALL:AAM85306 (EMBL:AJ414152) (373 aa) fasta scores: E(): 7.5e-115, 79.5% id in 366 aa, and to Salmonella typhimurium hypothetical protein ycea ycea or stm1156 SWALL:YCEA_SALTY (SWALL:Q8ZQ23) (350 aa) fasta scores: E(): 1e-101, 74.21% id in 349 aa
YP_049882.1	Similar to Salmonella typhimurium, and Salmonella typhi  secreted protein ycei or stm1157 or sty1194 SWALL:Q8XGU0 (EMBL:AE008750) (191 aa) fasta scores: E(): 1.1e-61, 82.19% id in 191 aa, and to Shigella flexneri orf, conserved hypothetical protein ycei or sf1063 SWALL:AAN42685 (EMBL:AE015134) (191 aa) fasta scores: E(): 1.1e-60, 80.1% id in 191 aa
YP_049883.1	Similar to Yersinia pestis  membrane protein ypo2316 SWALL:Q8ZE67 (EMBL:AJ414152) (184 aa) fasta scores: E(): 3.6e-53, 69.94% id in 183 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0422 SWALL:Q9I691 (EMBL:AE004479) (189 aa) fasta scores: E(): 8.1e-48, 62.63% id in 182 aa
YP_049884.1	BssS; regulator of biofilm through signal secretion; disruption of this gene in Escherichia coli led to effects on biofilm formation, alteration in expression of a number of genes and mutations in bssS led to defects in indole transport and autoinducer-2 uptake and processing
YP_049885.1	Similar to Escherichia coli O6 hypothetical protein c1435 SWALL:AAN79904 (EMBL:AE016759) (92 aa) fasta scores: E(): 0.5, 30.38% id in 79 aa
YP_049886.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA-damage-inducible protein I DinI or b1061 or c1328 or z1698 or ecs1439 or sf1067 SWALL:DINI_ECOLI (SWALL:Q47143) (81 aa) fasta scores: E(): 6.5e-18, 64.19% id in 81 aa
YP_049887.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_049888.1	Similar to Yersinia pestis hypothetical protein ypo1588 or y1744 SWALL:AAM85313 (EMBL:AJ414149) (95 aa) fasta scores: E(): 1.1e-15, 51.68% id in 89 aa, and to Neisseria meningitidis hypothetical protein Nma1764 SWALL:Q9JTI2 (EMBL:AL162757) (97 aa) fasta scores: E(): 1.4e-12, 43.33% id in 90 aa
YP_049889.1	bifunctional ribonuclease E/endoribonuclease/RNA-binding protein/RNA degradosome binding protein; forms part of the membrane-associated degradosome complex along with PNPase, RhlB, and enolase
YP_049890.1	catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA
YP_049891.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_049892.1	Similar to Yersinia pestis hypothetical protein ypo1594 or y1752 SWALL:Q8ZFU0 (EMBL:AJ414149) (174 aa) fasta scores: E(): 2.8e-56, 85.96% id in 171 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yced or g30k or b1088 or c1358 or z1727 or ecs1466 SWALL:YCED_ECOLI (SWALL:P14189) (173 aa) fasta scores: E(): 1e-53, 79.76% id in 173 aa
YP_049893.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_049894.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_049895.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_049896.1	Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 1.7e-91, 78.82% id in 307 aa
YP_049897.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_049898.1	carries the fatty acid chain in fatty acid biosynthesis
YP_049899.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_049900.1	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate
YP_049901.1	Similar to Yersinia pestis  exported protein ypo1604 SWALL:Q8ZFT1 (EMBL:AJ414149) (341 aa) fasta scores: E(): 8.7e-94, 69.79% id in 341 aa, and to Salmonella typhimurium  periplasmic solute-binding protein yceg or stm1199 SWALL:Q8ZQ13 (EMBL:AE008752) (340 aa) fasta scores: E(): 8.3e-79, 62.64% id in 340 aa
YP_049902.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_049903.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_049904.1	Similar to Yersinia pestis  deoxyribonuclease ypo1607 or y1766 SWALL:Q8ZFT0 (EMBL:AJ414149) (269 aa) fasta scores: E(): 1.2e-81, 75.47% id in 265 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein T1718 t1718 SWALL:AAO69342 (EMBL:AE016839) (265 aa) fasta scores: E(): 5e-78, 74.14% id in 263 aa
YP_049905.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_049906.1	Similar to Streptomyces coelicolor probable actinorhodin transporter actii-2 or sco5083 or scbac28g1.09 SWALL:AC22_STRCO (SWALL:P46105) (578 aa) fasta scores: E(): 9e-55, 40.4% id in 443 aa, and to Streptomyces avermitilis transmembrane efflux protein SWALL:Q93HG4 (EMBL:AB070943) (489 aa) fasta scores: E(): 2.2e-68, 46.59% id in 455 aa
YP_049907.1	Similar to Yersinia pestis hypothetical protein ypo1611 ypo1611 or y1770 SWALL:Q8ZFS7 (EMBL:AJ414149) (117 aa) fasta scores: E(): 3.7e-38, 86.84% id in 114 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycff ycff or stm1205 or sty1245 SWALL:Q8XER7 (EMBL:AE008752) (119 aa) fasta scores: E(): 9.5e-38, 83.47% id in 115 aa
YP_049908.1	Similar to Yersinia pestis  lipoprotein ypo1612 SWALL:Q8ZFS6 (EMBL:AJ414149) (129 aa) fasta scores: E(): 1e-15, 44.53% id in 119 aa, and to Shigella flexneri orf, conserved hypothetical protein ycfl or sf1108 SWALL:AAN42726 (EMBL:AE015138) (125 aa) fasta scores: E(): 1.5e-14, 38.88% id in 126 aa
YP_049909.1	Similar to Yersinia pestis  lipoprotein ypo1613 or y1772 SWALL:Q8ZFS5 (EMBL:AJ414149) (191 aa) fasta scores: E(): 2.2e-33, 66.49% id in 194 aa, and to Salmonella typhimurium  outer membrane lipoprotein ycfm or stm1207 SWALL:Q8ZQ08 (EMBL:AE008752) (212 aa) fasta scores: E(): 1.7e-24, 52.88% id in 208 aa
YP_049910.1	Similar to Yersinia pestis hypothetical y1773 SWALL:Q8CLA0 (EMBL:AE013780) (295 aa) fasta scores: E(): 8.1e-51, 45.89% id in 268 aa, and to Escherichia coli O157:H7  beta-glucosidase ycfn or z1745 or ecs1484 SWALL:Q8X8G6 (EMBL:AE005320) (274 aa) fasta scores: E(): 1.2e-25, 36.77% id in 242 aa
YP_049911.1	hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
YP_049912.1	Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycfp or stm1210 or sty1250 SWALL:Q8XGQ0 (EMBL:AE008752) (180 aa) fasta scores: E(): 8.5e-62, 82.77% id in 180 aa, and to Yersinia pestis hypothetical protein ypo1616 or y1776 SWALL:AAM85344 (EMBL:AJ414149) (180 aa) fasta scores: E(): 3.8e-61, 81.11% id in 180 aa
YP_049913.1	Similar to Escherichia coli NADH dehydrogenase Ndh or b1109 SWALL:DHNA_ECOLI (SWALL:P00393) (433 aa) fasta scores: E(): 8e-134, 80.37% id in 433 aa
YP_049914.1	Similar to Yersinia pestis hypothetical protein y1782 SWALL:AAM85350 (EMBL:AE013781) (188 aa) fasta scores: E(): 6.1e-55, 85.79% id in 183 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ycfj ycfj or b1110 or c1383 or sf1114 SWALL:AAN42732 (EMBL:AE000211) (192 aa) fasta scores: E(): 6.9e-52, 81.86% id in 182 aa
YP_049915.1	Similar to Streptomyces lividans sensor protein homolog SWALL:P72472 (EMBL:U63848) (410 aa) fasta scores: E(): 9.3e-49, 42.78% id in 388 aa, and to Streptomyces coelicolor  integral membrane transport protein sco0079 or scj11.08C SWALL:Q9RI96 (EMBL:AL939104) (407 aa) fasta scores: E(): 1.1e-48, 42.78% id in 388 aa
YP_049916.1	Similar to Pseudomonas putida transporter,  pp3961 SWALL:AAN69555 (EMBL:AE016788) (402 aa) fasta scores: E(): 5.9e-107, 75.25% id in 392 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2269 SWALL:Q9I1K4 (EMBL:AE004652) (401 aa) fasta scores: E(): 4.7e-74, 55.75% id in 391 aa
YP_049917.1	Similar to Pseudomonas putida transcriptional regulator, TetR family pp3960 SWALL:AAN69554 (EMBL:AE016788) (201 aa) fasta scores: E(): 1.5e-51, 74.35% id in 195 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4317 or agr_l_1093 SWALL:Q8U7Y2 (EMBL:AE009360) (201 aa) fasta scores: E(): 2.3e-29, 50% id in 196 aa
YP_049918.1	Similar to Salmonella typhimurium  heat shock protein yegd or stm2125 SWALL:Q8ZNQ4 (EMBL:AE008794) (450 aa) fasta scores: E(): 1.2e-121, 68.22% id in 450 aa, and to Escherichia coli hypothetical chaperone protein yegd yegd or b2069 SWALL:YEGD_ECOLI (SWALL:P36928) (450 aa) fasta scores: E(): 1.6e-121, 69.33% id in 450 aa
YP_049919.1	Similar to Escherichia coli transcription-repair coupling factor Mfd or b1114 SWALL:MFD_ECOLI (SWALL:P30958) (1148 aa) fasta scores: E(): 0, 83.1% id in 1148 aa
YP_049920.1	part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane
YP_049921.1	outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone
YP_049922.1	part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane
YP_049923.1	Similar to Escherichia coli hypothetical protein ycfx or b1119 SWALL:YCFX_ECOLI (SWALL:P75959) (303 aa) fasta scores: E(): 5.4e-79, 62.37% id in 303 aa, and to Salmonella typhimurium  regulator ycfx or stm1220 SWALL:Q8ZPZ9 (EMBL:AE008753) (303 aa) fasta scores: E(): 1.7e-78, 62.37% id in 303 aa
YP_049924.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_049925.1	no significant database matches
YP_049926.1	Similar to Pseudomonas aeruginosa transcriptional activator protein Anr or pa1544 SWALL:ANR_PSEAE (SWALL:P23926) (244 aa) fasta scores: E(): 2.9e-09, 25.59% id in 211 aa, and to Pseudomonas stutzeri DnrE protein DnrE SWALL:Q9X7J7 (EMBL:AJ131716) (231 aa) fasta scores: E(): 8.4e-10, 28% id in 175 aa
YP_049927.1	Similar to Methanosarcina mazei hypothetical protein Mm1422 SWALL:Q8PX00 (EMBL:AE013376) (107 aa) fasta scores: E(): 1.9e-13, 43.56% id in 101 aa, and to Fusobacterium nucleatum hypothetical cytosolic protein Fn1305 SWALL:Q8RE25 (EMBL:AE010636) (111 aa) fasta scores: E(): 6e-08, 35.92% id in 103 aa
YP_049928.1	Similar to Haemophilus influenzae hypothetical protein Hi0095 SWALL:Y095_HAEIN (SWALL:Q57060) (251 aa) fasta scores: E(): 1e-51, 54.33% id in 254 aa, and to Pasteurella multocida hypothetical protein Pm1158 SWALL:Q9CLQ7 (EMBL:AE006156) (251 aa) fasta scores: E(): 1.9e-51, 53.54% id in 254 aa
YP_049929.1	with BtuD and BtuF transports vitamin B12 into the cell
YP_049930.1	similar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane
YP_049931.1	ATP-binding protein that acts with the transmembrane protein BtuC and the solute binding protein BtuF to transport vitamin B12 into the cell
YP_049932.1	Similar to Escherichia coli probable lipoprotein nlpc precursor NlpC or b1708 SWALL:NLPC_ECOLI (SWALL:P23898) (154 aa) fasta scores: E(): 5e-43, 66.02% id in 156 aa, and to Yersinia pestis  lipoprotein NlpC or ypo2415 or y1925 SWALL:Q8ZDY1 (EMBL:AJ414152) (154 aa) fasta scores: E(): 2.7e-43, 68.79% id in 157 aa
YP_049933.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_049934.1	no significant database matches
YP_049935.1	Similar to Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 7.1e-94, 74.62% id in 331 aa
YP_049936.1	Similar to Escherichia coli thermosensitive gluconokinase IdnK or GntV or b4268 SWALL:IDNK_ECOLI (SWALL:P39208) (187 aa) fasta scores: E(): 5.8e-34, 62.02% id in 158 aa
YP_049937.1	Similar to Escherichia coli high-affinity gluconate transporter GntT or UsgA or GntM or b3415 SWALL:GNTT_ECOLI (SWALL:P39835) (437 aa) fasta scores: E(): 3e-118, 76.8% id in 444 aa
YP_049938.1	Similar to Escherichia coli hypothetical protein ydiv or b1707 SWALL:YDIV_ECOLI (SWALL:P76204) (237 aa) fasta scores: E(): 3.5e-23, 36.17% id in 235 aa, and to Shigella flexneri orf, conserved hypothetical protein ydiv or sf1524 SWALL:AAN43114 (EMBL:AE015175) (237 aa) fasta scores: E(): 3.1e-22, 35.74% id in 235 aa
YP_049939.1	Similar to Escherichia coli hypothetical protein ydiu or b1706 SWALL:YDIU_ECOLI (SWALL:P77649) (478 aa) fasta scores: E(): 5.7e-126, 64.56% id in 477 aa, and to Salmonella typhimurium  cytoplasmic protein ydiu or stm1345 SWALL:Q8ZPS5 (EMBL:AE008758) (480 aa) fasta scores: E(): 7.7e-126, 63.59% id in 478 aa
YP_049940.1	with HmuTU is involved in the transport of hemin
YP_049941.1	Similar to Yersinia pestis hemin transport system permease protein HmuU or ypo0280 or y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 2.2e-91, 72.34% id in 329 aa
YP_049942.1	Similar to Yersinia pestis hemin-binding periplasmic protein HmuT precursor HmuT or ypo0281 or y0541 SWALL:HMUT_YERPE (SWALL:Q56991) (279 aa) fasta scores: E(): 2.7e-57, 60.66% id in 272 aa
YP_049943.1	Similar to Yersinia enterocolitica hemin transport protein HemS SWALL:HEMS_YEREN (SWALL:P31517) (345 aa) fasta scores: E(): 2.2e-92, 65.33% id in 349 aa
YP_049944.1	Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase AglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 1.4e-152, 82.95% id in 440 aa
YP_049945.1	Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIBC component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 6.7e-142, 69.04% id in 533 aa
YP_049946.1	Similar to Escherichia coli fatty acyl responsive regulator farr or g30 or b0730 SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 6e-25, 33.19% id in 235 aa, and to Shigella flexneri  transcriptional regulator yidp or sf3779 SWALL:AAN45221 (EMBL:AE015385) (224 aa) fasta scores: E(): 1.8e-45, 54.01% id in 224 aa
YP_049947.1	Similar to Erwinia rhapontici sucrose isomerase PalI SWALL:Q9AI64 (EMBL:AF279281) (600 aa) fasta scores: E(): 1.7e-171, 70.25% id in 558 aa
YP_049948.1	tryptophan sensitive; catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate
YP_049949.1	Similar to Yersinia pestis hypothetical protein ypo2410 or y1929 SWALL:AAM85495 (EMBL:AJ414152) (273 aa) fasta scores: E(): 8.8e-89, 83.15% id in 273 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ydia or b1703 or c2099 or z2732 or ecs2410 or sf1527 SWALL:YDIA_ECOLI (SWALL:P03822) (277 aa) fasta scores: E(): 1.4e-85, 80.22% id in 273 aa
YP_049950.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_049951.1	catalyzes the conversion of aminoimidazole ribotide to the 4-amino-5-hydroxymethyl-2-methyl pyrimidine moiety of thiamine; involved in the maintenance and/or assembly of sulfur clusters; periplasmic lipoporotein anchored to the inner membrane; part of the thiamine pyrophosphate biosynthesis pathway
YP_049952.2	YdiK; inner membrane protein; ydiK promoter presents a PurR sequence, suggesting that its expression is purine-regulated; unknown function
YP_049953.1	Similar to Yersinia pestis hypothetical protein ypo2407 or y1932 SWALL:AAM85498 (EMBL:AJ414152) (1018 aa) fasta scores: E(): 0, 82.41% id in 1018 aa, and to Escherichia coli hypothetical protein ydij or b1687 SWALL:YDIJ_ECOLI (SWALL:P77748) (1018 aa) fasta scores: E(): 0, 79.05% id in 1017 aa
YP_049954.1	Similar to Yersinia pestis hypothetical protein ypo2406 or y1933 SWALL:Q8ZDY8 (EMBL:AJ414152) (138 aa) fasta scores: E(): 1.6e-41, 77.37% id in 137 aa, and to Escherichia coli hypothetical protein ydii or b1686 SWALL:YDII_ECOLI (SWALL:P77781) (136 aa) fasta scores: E(): 9e-38, 69.11% id in 136 aa
YP_049955.1	no significant database matches
YP_049956.1	functions as a scaffold on which iron-sulfur clusters ([2Fe-2S]; [4Fe-4S]) are assembled; forms a homodimer; similar to IscA protein
YP_049957.1	with SufCD activates cysteine desulfurase SufS
YP_049958.1	part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE
YP_049959.1	with SufBC activates cysteine desulfurase SufS
YP_049960.1	catalyzes the formation of L-alanine and selenide or sulfanylcysteine from selenocysteine or cysteine
YP_049961.1	Acts with SufS to catalyze the formation of L-alanine from L-cysteine
YP_049962.1	Similar to Yersinia pestis hypothetical protein y1940 SWALL:AAM85506 (EMBL:AE013797) (354 aa) fasta scores: E(): 4.6e-90, 72.64% id in 340 aa, and to Shigella flexneri orf, conserved hypothetical protein ycfs or sf1117 SWALL:AAN42735 (EMBL:AE015138) (321 aa) fasta scores: E(): 2.7e-68, 62.98% id in 308 aa
YP_049963.1	Similar to Erwinia amylovora major outer membrane lipoprotein precursor Lpp SWALL:MULI_ERWAM (SWALL:P02939) (78 aa) fasta scores: E(): 9e-23, 92.3% id in 78 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri major outer membrane lipoprotein precursor Lpp or MlpA or MulI or b1677 or c2072 or z2705 or ecs2384 or sf1706 SWALL:MULI_ECOLI (SWALL:P02937) (78 aa) fasta scores: E(): 1.8e-21, 89.74% id in 78 aa
YP_049964.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_049965.1	Weakly similar to Salmonella typhimurium cytoplasmic protein stm4422 SWALL:Q8ZK60 (EMBL:AE008907) (100 aa) fasta scores: E(): 8.7, 26.47% id in 68 aa, and to Pyrobaculum aerophilum ribosomal protein l24 pae3345 SWALL:Q8ZTA6 (EMBL:AE009925) (58 aa) fasta scores: E(): 9.4, 29.68% id in 64 aa
YP_049966.1	Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 1.8e-83, 76.07% id in 280 aa, and to Escherichia coli cryptic beta-glucoside bgl operon antiterminator BglG or BglC or b3723 SWALL:BGLG_ECOLI (SWALL:P11989) (278 aa) fasta scores: E(): 6.2e-56, 53.26% id in 276 aa. Also similar to ECA1452 (45.600% id. in 250 aa overlap), and to ECA4389 (46.400% id. in 274 aa overlap), and to ECA0858 (38.000% id. in 272 aa overlap)
YP_049967.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_049968.1	Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 2.3e-165, 80.56% id in 463 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglB or b3721 SWALL:BGLB_ECOLI (SWALL:P11988) (470 aa) fasta scores: E(): 1.1e-149, 72.6% id in 460 aa
YP_049969.1	Similar to Aeromonas salmonicida maltoporin precursor LamB SWALL:LAMB_AERSA (SWALL:Q44287) (445 aa) fasta scores: E(): 1.8e-16, 32.18% id in 463 aa, and to Escherichia coli  outer membrane protein yiec precursor yiec or b3720 SWALL:YIEC_ECOLI (SWALL:P26218) (538 aa) fasta scores: E(): 1.5e-109, 53.09% id in 550 aa
YP_049970.1	Similar to Escherichia coli O6 hypothetical protein yiel or c4641 SWALL:AAN83073 (EMBL:AE016769) (400 aa) fasta scores: E(): 4.7e-106, 70.57% id in 401 aa, and to Shigella flexneri  xylanase yiel or sf3738 SWALL:AAN45183 (EMBL:AE015381) (402 aa) fasta scores: E(): 5.9e-105, 70.07% id in 401 aa
YP_049971.1	Similar to Xanthomonas campestris inosine-uridine preferring nucleoside hydrolase xcc1038 SWALL:Q8PBT1 (EMBL:AE012200) (316 aa) fasta scores: E(): 5.3e-08, 29.32% id in 283 aa, and to Bradyrhizobium japonicum Blr4705 protein blr4705 SWALL:BAC49970 (EMBL:AP005952) (308 aa) fasta scores: E(): 8.5e-17, 28.66% id in 300 aa
YP_049972.1	catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552
YP_049973.1	part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia
YP_049974.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri NrfC protein precursor NrfC or b4072 or z5671 or ecs5054 or sf4132 SWALL:NRFC_ECOLI (SWALL:P32708) (223 aa) fasta scores: E(): 8.4e-76, 83.4% id in 223 aa. Also similar to ECA0914 (56.444% id. in 225 aa overlap)
YP_049975.1	Similar to Escherichia coli NrfD protein NrfD or b4073 SWALL:NRFD_ECOLI (SWALL:P32709) (318 aa) fasta scores: E(): 2.2e-95, 73.56% id in 314 aa. Also similar to ECA0913 (50.784% id. in 319 aa overlap)
YP_049976.1	with NrfF and NrfG catalyzes the insertion of heme into cytochrome c552
YP_049977.1	Similar to Escherichia coli formate-dependent nitrite reductase complex NrfF subunit precursor nrff or b4075 SWALL:NRFF_ECOLI (SWALL:P32711) (127 aa) fasta scores: E(): 1.3e-26, 59.35% id in 123 aa
YP_049978.1	Similar to Escherichia coli formate-dependent nitrite reductase complex NrfG subunit NrfG or b4076 SWALL:NRFG_ECOLI (SWALL:P32712) (198 aa) fasta scores: E(): 3.6e-35, 55.78% id in 190 aa
YP_049979.1	ATP-binding protein; required for proper cytochrome c maturation
YP_049980.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 heme exporter protein B CcmB or b2200 or c2737 or z3457 or ecs3089 SWALL:CCMB_ECOLI (SWALL:P33930) (220 aa) fasta scores: E(): 4.7e-62, 78.24% id in 216 aa
YP_049981.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri heme exporter protein C CcmC or b2199 or c2736 or z3456 or ecs3088 or sf2283 SWALL:CCMC_ECOLI (SWALL:P33929) (245 aa) fasta scores: E(): 3.1e-70, 69.54% id in 243 aa
YP_049982.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri heme exporter protein D CcmD or b2198 or c2735 or z3455 or ecs3087 or sf2282 SWALL:CCMD_ECOLI (SWALL:P36770) (69 aa) fasta scores: E(): 1.1e-11, 52.23% id in 67 aa
YP_049983.1	CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane
YP_049984.1	Similar to Escherichia coli cytochrome C-type biogenesis protein CcmF or b2196 SWALL:CCMF_ECOLI (SWALL:P33927) (647 aa) fasta scores: E(): 1.2e-198, 74% id in 650 aa
YP_049985.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri thiol:disulfide interchange protein DsbE or CcmG or b2195 or z3452 or ecs3084 or sf2279 SWALL:DSBE_ECOLI (SWALL:P33926) (185 aa) fasta scores: E(): 5.4e-57, 77.47% id in 182 aa
YP_049986.1	Similar to the N-terminal half of Escherichia coli, and Shigella flexneri cytochrome c-type biogenesis protein CcmH precursor CcmH or b2194 or sf2278 SWALL:CCMH_ECOLI (SWALL:P33925) (350 aa) fasta scores: E(): 1e-28, 59.12% id in 137 aa
YP_049987.1	Similar to the C-terminal half of Escherichia coli, and Shigella flexneri cytochrome C-type biogenesis protein CcmH precursor CcmH or b2194 or sf2278 SWALL:CCMH_ECOLI (SWALL:P33925) (350 aa) fasta scores: E(): 5.9e-35, 48.14% id in 216 aa
YP_049988.1	DoubtfulCDS. No significant database matches
YP_049989.1	with NapABDFGH functions as a nitrate reductase; NapC functions as an electron shuttle between NapAB and NapGH or quinone
YP_049990.1	small subunit of periplasmic nitrate reductase; receives electrons from the membrane-bound NapC and passes them to NapA
YP_049991.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA
YP_049992.1	part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway
YP_049993.1	periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC
YP_049994.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri napd protein NapD or b2207 or z3464 or ecs3096 or sf2291 SWALL:NAPD_ECOLI (SWALL:P33938) (87 aa) fasta scores: E(): 8.9e-14, 50.56% id in 89 aa
YP_049995.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ferredoxin-type protein NapF or b2208 or c2747 or z3465 or ecs3097 SWALL:NAPF_ECOLI (SWALL:P33939) (164 aa) fasta scores: E(): 9.9e-37, 53.79% id in 158 aa
YP_049996.1	no significant database matches
YP_049997.1	Similar to Escherichia coli nitrate/nitrite sensor protein NarQ or b2469 SWALL:NARQ_ECOLI (SWALL:P27896) (566 aa) fasta scores: E(): 3.6e-131, 64.45% id in 557 aa
YP_049998.1	nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes
YP_049999.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 1.8e-23, 31.85% id in 270 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20572 SWALL:Q8D6G1 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.4e-21, 30.65% id in 274 aa
YP_050000.1	Similar to Mycobacterium tuberculosis  two-domain membrane protein rv3728 or mt3831 or mtv025.076 SWALL:O69695 (EMBL:AL022121) (1071 aa) fasta scores: E(): 1.6e-42, 38.68% id in 455 aa, and to Streptomyces coelicolor  integral membrane efflux protein sco6553 or sc4b5.03C SWALL:Q9ZBW5 (EMBL:AL939128) (504 aa) fasta scores: E(): 1.1e-33, 35.12% id in 410 aa
YP_050001.1	Similar to Rhizobium loti probable zinc-binding oxidoreductase mll2116 SWALL:Q98J41 (EMBL:AP002999) (334 aa) fasta scores: E(): 2.9e-75, 64.56% id in 333 aa, and to Agrobacterium tumefaciens zinc-binding oxidoreductase atu5447 or agr_pat_656 SWALL:Q8UJM9 (EMBL:AE008965) (359 aa) fasta scores: E(): 2.5e-74, 62.23% id in 331 aa
YP_050002.1	Similar to Pseudomonas putida oxidoreductase, short chain dehydrogenase/reductase family pp2989 SWALL:AAN68597 (EMBL:AE016785) (264 aa) fasta scores: E(): 7.5e-67, 74.71% id in 261 aa, and to Agrobacterium tumefaciens short-chain dehydrogenase atu5444 or agr_pat_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 4.6e-55, 64.86% id in 259 aa
YP_050003.1	Similar to Clostridium perfringens hypothetical protein Cpe0723 cpe0723 SWALL:Q8XMG6 (EMBL:AP003187) (262 aa) fasta scores: E(): 2.4e-24, 33.07% id in 260 aa, and to Vibrio vulnificus predicted hydrolase of the had superfamily vv21429 SWALL:AAO08308 (EMBL:AE016813) (267 aa) fasta scores: E(): 2.1e-23, 31.67% id in 262 aa
YP_050004.1	Similar to Rhizobium meliloti  transcription regulator protein r03273 or smc03890 SWALL:Q92L17 (EMBL:AL591793) (260 aa) fasta scores: E(): 1.2e-30, 37.5% id in 248 aa, and to Agrobacterium tumefaciens transcriptional regulator, DeoR family atu2725 or agr_c_4939 SWALL:Q8UBX4 (EMBL:AE009218) (266 aa) fasta scores: E(): 1.2e-30, 39.67% id in 247 aa
YP_050005.1	Similar to Rhodococcus fascians  integral membrane protein SWALL:CAD52983 (EMBL:AJ301559) (379 aa) fasta scores: E(): 2.4e-32, 35.1% id in 376 aa, and to Leptospira interrogans predicted DNA repair exonuclease la3166 SWALL:AAN50364 (EMBL:AE011479) (280 aa) fasta scores: E(): 1.5e-31, 40.22% id in 271 aa
YP_050006.1	Similar to Legionella pneumophila catalase-peroxidase KatB SWALL:Q9ZGM4 (EMBL:AF078110) (721 aa) fasta scores: E(): 0, 78.28% id in 723 aa, and to Synechococcus sp. catalase-peroxidase SWALL:Q9R6S9 (EMBL:AF197161) (720 aa) fasta scores: E(): 0, 78.75% id in 720 aa
YP_050007.1	Similar to Yersinia pestis hypothetical protein ypo0865 or y3250 SWALL:Q8ZHM6 (EMBL:AJ414145) (106 aa) fasta scores: E(): 7.5e-08, 39.78% id in 93 aa
YP_050008.1	Similar to Pseudomonas aeruginosa multidrug resistance operon repressor MexR or pa0424 SWALL:MEXR_PSEAE (SWALL:P52003) (147 aa) fasta scores: E(): 1.3e-06, 30.07% id in 133 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll4921 SWALL:BAC50186 (EMBL:AP005953) (169 aa) fasta scores: E(): 7.3e-06, 40.2% id in 97 aa
YP_050009.1	Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 9.5e-05, 22.56% id in 226 aa, and to Caulobacter crescentus ABC transporter, periplasmic substrate-binding protein cc1833 SWALL:Q9A793 (EMBL:AE005857) (369 aa) fasta scores: E(): 3.6e-67, 55.78% id in 337 aa, and to Synechocystis sp. hypothetical protein Sll1080 SWALL:P73267 (EMBL:D90905) (352 aa) fasta scores: E(): 1.5e-19, 28.97% id in 283 aa
YP_050010.1	Similar to Escherichia coli taurine transport system permease protein TauC or SsiC or b0367 SWALL:TAUC_ECOLI (SWALL:Q47539) (275 aa) fasta scores: E(): 1.8e-22, 35.07% id in 268 aa, and to Caulobacter crescentus ABC transporter, permease protein cc1832 SWALL:Q9A794 (EMBL:AE005857) (271 aa) fasta scores: E(): 1.8e-50, 53% id in 266 aa
YP_050011.1	Similar to Caulobacter crescentus ABC transporter, ATP-binding protein cc1831 SWALL:Q9A795 (EMBL:AE005857) (253 aa) fasta scores: E(): 1e-52, 57.74% id in 239 aa, and to Synechocystis sp. nitrate transport protein NrtD or slr0044 SWALL:Q55463 (EMBL:D64006) (282 aa) fasta scores: E(): 2.7e-29, 39.59% id in 245 aa
YP_050012.1	Similar to Caulobacter crescentus hypothetical protein Cc1827 SWALL:Q9A799 (EMBL:AE005857) (279 aa) fasta scores: E(): 4.8e-22, 37.88% id in 227 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0715 SWALL:BAC17525 (EMBL:AP005216) (292 aa) fasta scores: E(): 2e-16, 33.47% id in 227 aa
YP_050013.1	Similar to Caulobacter crescentus hypothetical protein Cc1828 SWALL:Q9A798 (EMBL:AE005857) (208 aa) fasta scores: E(): 7.8e-41, 53.03% id in 198 aa, and to Corynebacterium efficiens conserved hypothetical protein ce0714 SWALL:BAC17524 (EMBL:AP005216) (238 aa) fasta scores: E(): 1.6e-32, 43.78% id in 201 aa
YP_050014.1	Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 3.6e-203, 44.47% id in 1212 aa, and to Caulobacter crescentus urea amidolyase-related protein cc1829 SWALL:Q9A797 (EMBL:AE005857) (1207 aa) fasta scores: E(): 0, 56.38% id in 1206 aa
YP_050015.1	Similar to Shigella flexneri orf, conserved hypothetical protein ykgg or sf0258 SWALL:AAN41918 (EMBL:AE015061) (231 aa) fasta scores: E(): 4.1e-59, 66.23% id in 231 aa, and to Escherichia coli hypothetical protein ykgg or b0308 SWALL:YKGG_ECOLI (SWALL:P77433) (231 aa) fasta scores: E(): 1.3e-58, 65.8% id in 231 aa
YP_050016.1	Similar to Escherichia coli  electron transport protein ykgf or b0307 SWALL:YKGF_ECOLI (SWALL:P77536) (475 aa) fasta scores: E(): 1.4e-163, 85.83% id in 473 aa, and to Shigella flexneri orf, conserved hypothetical protein ykgf or sf0259 SWALL:AAN41919 (EMBL:AE015061) (475 aa) fasta scores: E(): 1.7e-163, 85.83% id in 473 aa
YP_050017.1	Similar to Escherichia coli hypothetical protein ykge or b0306 SWALL:YKGE_ECOLI (SWALL:P77252) (239 aa) fasta scores: E(): 3.5e-78, 79.49% id in 239 aa, and to Shigella flexneri  dehydrogenase subunit ykge or sf0260 SWALL:AAN41920 (EMBL:AE015061) (239 aa) fasta scores: E(): 1.7e-78, 80.33% id in 239 aa
YP_050018.1	Similar to Streptococcus iniae L-lactate permease LctP SWALL:LCTP_STRIN (SWALL:O33654) (474 aa) fasta scores: E(): 4.3e-39, 41.53% id in 455 aa, and to Escherichia coli L-lactate permease LLdP or LctP or b3603 SWALL:LLDP_ECOLI (SWALL:P33231) (551 aa) fasta scores: E(): 7.8e-27, 33.64% id in 535 aa
YP_050019.1	NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones
YP_050020.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_050021.1	catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge
YP_050022.1	binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers
YP_050023.1	Similar to Yersinia pestis  exported protein ypo2385 SWALL:Q8ZE05 (EMBL:AJ414152) (288 aa) fasta scores: E(): 3.8e-45, 54.94% id in 293 aa, and to Escherichia coli hypothetical protein ydho precursor ydho or b1655 SWALL:YDHO_ECOLI (SWALL:P76190) (271 aa) fasta scores: E(): 1.2e-37, 52.48% id in 282 aa
YP_050024.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein ydhd or b1654 or c2048 or z2676 or ecs2363 or sf1682 SWALL:YDHD_ECOLI (SWALL:P37010) (115 aa) fasta scores: E(): 5e-40, 88.79% id in 116 aa, and to Salmonella typhimurium, and Salmonella typhi  glutaredoxin protein ydhd or stm1433 or sty1689 SWALL:Q8XGR7 (EMBL:AE008762) (115 aa) fasta scores: E(): 1.5e-40, 90.51% id in 116 aa
YP_050025.1	Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
YP_050026.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri lactoylglutathione lyase GloA or b1651 or z2669 or ecs2360 or sf1678 SWALL:LGUL_ECOLI (SWALL:Q59384) (135 aa) fasta scores: E(): 1.1e-41, 79.25% id in 135 aa
YP_050027.1	Similar to Yersinia pestis hypothetical protein Ypo2376 SWALL:Q8ZE14 (EMBL:AJ414152) (121 aa) fasta scores: E(): 8.5e-22, 58.76% id in 97 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z2665 or ecs2358 SWALL:Q8X634 (EMBL:AE005388) (125 aa) fasta scores: E(): 1.4e-19, 53.84% id in 104 aa
YP_050028.1	Transcription regulator that can both activate or repress expression
YP_050029.1	Similar to Pectobacterium carotovorum subsp. carotovorum outer membrane lipoprotein Pcp SWALL:Q9RB08 (EMBL:AF168687) (155 aa) fasta scores: E(): 2.2e-44, 99.35% id in 155 aa, and to Serratia sp. ATCC 39006 outer membrane lipoprotein Pcp SWALL:Q9RA95 (EMBL:AF168597) (155 aa) fasta scores: E(): 9.6e-39, 83.22% id in 155 aa
YP_050030.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_050031.1	Similar to Yersinia pestis  lipoprotein ypo2371 SWALL:Q8ZE18 (EMBL:AJ414152) (104 aa) fasta scores: E(): 1.1e-16, 53.33% id in 105 aa, and to Yersinia enterocolitica hypothetical protein SWALL:YOR4_YEREN (SWALL:P28837) (101 aa) fasta scores: E(): 2.1e-15, 51.54% id in 97 aa
YP_050032.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate
YP_050033.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_050034.1	catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal
YP_050035.1	Similar to Escherichia coli, and Escherichia coli O157:H7 glutathione s-transferase Gst or b1635 or z2647 or ecs2344 SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta scores: E(): 3.8e-39, 53.23% id in 201 aa
YP_050036.1	Similar to Escherichia coli O157:H7  symport protein z0888 or ecs0758 SWALL:Q8X4W0 (EMBL:AE005251) (426 aa) fasta scores: E(): 2.1e-69, 49.63% id in 413 aa, and to Ralstonia solanacearum  glutamate symport transmembrane protein rsc1957 or rs03531 SWALL:Q8XY06 (EMBL:AL646067) (428 aa) fasta scores: E(): 2.5e-96, 63.4% id in 429 aa
YP_050037.1	no significant database matches
YP_050038.1	Catalyzes the conversion of citrate to isocitrate
YP_050039.1	Similar to Escherichia coli periplasmic oligopeptide-binding protein precursor OppA or b1243 SWALL:OPPA_ECOLI (SWALL:P23843) (543 aa) fasta scores: E(): 1.2e-106, 49.35% id in 545 aa
YP_050040.1	catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate
YP_050041.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidylglycerophosphatase B PgpB or b1278 or z2529 or ecs1851 or sf1282 SWALL:PGPB_ECOLI (SWALL:P18201) (254 aa) fasta scores: E(): 6.1e-68, 61.75% id in 251 aa
YP_050042.1	Similar to Yersinia pestis hypothetical protein ypo3317 or y0872 SWALL:Q9X6A8 (EMBL:AF135170) (205 aa) fasta scores: E(): 1.9e-27, 46.77% id in 186 aa
YP_050043.1	Similar to Escherichia coli D-xylose transport ATP-binding protein XylG or b3567 SWALL:XYLG_ECOLI (SWALL:P37388) (513 aa) fasta scores: E(): 3.6e-64, 41.23% id in 502 aa, and to Yersinia pestis  sugar ABC transporter, ATP-binding protein ypo3316 or y0873 SWALL:AAM84458 (EMBL:AJ414156) (507 aa) fasta scores: E(): 2.3e-134, 78.52% id in 503 aa
YP_050044.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ribose transport system permease protein RbsC or b3750 or c4678 or z5251 or ecs4692 SWALL:RBSC_ECOLI (SWALL:P04984) (321 aa) fasta scores: E(): 2e-30, 38.92% id in 316 aa, and to Yersinia pestis  sugar ABC transporter, permease protein ypo3315 or RbsC or y0874 SWALL:Q8ZBT0 (EMBL:AJ414156) (381 aa) fasta scores: E(): 5.3e-111, 87.84% id in 362 aa
YP_050045.1	Similar to the N-terminal region of Homo sapiens transketolase Tkt or Tkt1 SWALL:TKT_HUMAN (SWALL:P29401) (623 aa) fasta scores: E(): 1.8e-21, 34.22% id in 263 aa, and to Yersinia pestis  N-terminal region of transketolase ypo3314 SWALL:Q8ZBT1 (EMBL:AJ414156) (276 aa) fasta scores: E(): 3e-96, 88.4% id in 276 aa
YP_050046.1	Similar to Escherichia coli 1-deoxy-D-xylulose 5-phosphate synthase Dxs or b0420 SWALL:DXS_ECOLI (SWALL:P77488) (619 aa) fasta scores: E(): 7.6e-18, 30.24% id in 281 aa, and to Yersinia pestis c-terminal region of transketolase ypo3313 SWALL:Q8ZBT2 (EMBL:AJ414156) (314 aa) fasta scores: E(): 2e-97, 80.19% id in 313 aa
YP_050047.1	Similar to Thermus aquaticus glycerol kinase GlpK SWALL:GLPK_THEAQ (SWALL:Q9WX53) (496 aa) fasta scores: E(): 3.1e-67, 41.63% id in 490 aa, and to Yersinia pestis glycerol kinase ypo3312 or GlpK or y0876 SWALL:Q8ZBT3 (EMBL:AJ414156) (495 aa) fasta scores: E(): 7.5e-143, 70.1% id in 495 aa
YP_050048.1	Similar to Thermus thermophilus xylose isomerase xylA SWALL:XYLA_THETH (SWALL:P26997) (387 aa) fasta scores: E(): 8.9e-12, 26.58% id in 331 aa, and to Thermotoga maritima sugar isomerase tm1071 SWALL:Q9X0G0 (EMBL:AE001767) (383 aa) fasta scores: E(): 4e-10, 25.52% id in 333 aa
YP_050049.1	Similar to Yersinia pestis  transcriptional regulatory protein ypo3310 or y0878 SWALL:AAM84462 (EMBL:AJ414156) (314 aa) fasta scores: E(): 6.9e-93, 82.16% id in 314 aa, and to Agrobacterium tumefaciens transcriptional regulator atu1904 or agr_c_3494 SWALL:Q8UE57 (EMBL:AE009144) (319 aa) fasta scores: E(): 1.3e-40, 40.19% id in 316 aa
YP_050050.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein ycis ycis or b1279 or sf1283 SWALL:AAN42895 (EMBL:AE000226) (102 aa) fasta scores: E(): 7.4e-25, 75.78% id in 95 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein ycis or stm1709 or sty1342 SWALL:Q8XFS5 (EMBL:AE008776) (102 aa) fasta scores: E(): 4.1e-24, 71.71% id in 99 aa
YP_050051.1	Similar to Yersinia pestis hypothetical protein ypo2225 or y2067 SWALL:Q8ZEE7 (EMBL:AJ414151) (389 aa) fasta scores: E(): 1.7e-119, 79.69% id in 389 aa, and to Shigella flexneri  heat shock protein ycim or sf1284 SWALL:AAN42896 (EMBL:AE015155) (389 aa) fasta scores: E(): 4.9e-117, 77.31% id in 388 aa
YP_050052.1	OMP decarboxylase; OMPDCase; OMPdecase; type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_050053.1	involved in start site selection during the initiation of translation
YP_050054.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri osmotically inducible lipoprotein B precursor OsmB or b1283 or c1753 or z2523 or ecs1856 or sf1287 SWALL:OSMB_ECOLI (SWALL:P17873) (72 aa) fasta scores: E(): 5.7e-13, 73.52% id in 68 aa
YP_050055.1	catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source
YP_050056.1	Similar to Escherichia coli carbon starvation protein A CstA or b0598 SWALL:CSTA_ECOLI (SWALL:P15078) (701 aa) fasta scores: E(): 8.8e-164, 60.67% id in 684 aa
YP_050057.1	Similar to Listeria monocytogenes hypothetical protein Lmo0640 SWALL:Q8Y993 (EMBL:AL591976) (305 aa) fasta scores: E(): 4.4e-86, 74.42% id in 305 aa, and to Clostridium acetobutylicum aldo/keto reductase family enzyme cac3378 SWALL:Q97DU3 (EMBL:AE007834) (306 aa) fasta scores: E(): 7.6e-74, 62.86% id in 307 aa
YP_050058.1	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
YP_050059.1	Similar to Alcaligenes eutrophus CbbbC SWALL:P72261 (EMBL:U60056) (757 aa) fasta scores: E(): 2.9e-139, 50.66% id in 758 aa, and to Pseudomonas putida molybdopterin oxidoreductase, alpha subunit pp0256 SWALL:AAN65887 (EMBL:AE016775) (781 aa) fasta scores: E(): 3e-184, 60% id in 760 aa
YP_050060.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa5179 SWALL:Q9HU10 (EMBL:AE004931) (293 aa) fasta scores: E(): 4.3e-38, 41.33% id in 300 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp4601 SWALL:AAN70174 (EMBL:AE016791) (295 aa) fasta scores: E(): 2e-34, 37.91% id in 298 aa
YP_050061.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri transcriptional repressor CytR or b3934 or c4887 or z5481 or ecs4861 or sf4012 SWALL:CYTR_ECOLI (SWALL:P06964) (341 aa) fasta scores: E(): 2.1e-16, 25.88% id in 340 aa, and to Yersinia pestis LacI-family regulatory protein ypo0846 or y3231 SWALL:Q8ZHP4 (EMBL:AJ414145) (360 aa) fasta scores: E(): 2.3e-80, 56.66% id in 360 aa
YP_050062.1	Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 2.6e-53, 42.85% id in 329 aa, and to Yersinia pestis  sugar transporter ypo0847 or ExuT or y3232 SWALL:AAM86782 (EMBL:AJ414145) (435 aa) fasta scores: E(): 1.2e-142, 77.03% id in 431 aa. Also similar to ECA0644 (44.039% id in 411 aa overlap)
YP_050063.1	Similar to Yersinia pestis  glucosidase ypo0848 or y3233 SWALL:Q8ZHP2 (EMBL:AJ414145) (792 aa) fasta scores: E(): 0, 76.27% id in 784 aa, and to Bacillus thermoamyloliquefaciens alpha-glucosidase II SWALL:AGL2_BACTQ (SWALL:Q9F234) (787 aa) fasta scores: E(): 1.5e-66, 27.93% id in 784 aa
YP_050064.1	The C-terminal region of this CDS is similar to Shewanella frigidimarina fumarate reductase flavoprotein subunit precursor FccA or Fcc3 SWALL:FRDA_SHEFR (SWALL:Q02469) (596 aa) fasta scores: E(): 2.7e-64, 43.72% id in 462 aa, and to Staphylococcus epidermidis NADH-dependent flavin oxidoreductase se0195 SWALL:AAO03792 (EMBL:AE016744) (1005 aa) fasta scores: E(): 2.2e-69, 38.82% id in 1007 aa
YP_050065.1	Similar to Clostridium perfringens thiamin biosynthesis lipoprotein ApbA or cpe2227 SWALL:Q8XI94 (EMBL:AP003193) (342 aa) fasta scores: E(): 6.1e-46, 41.47% id in 311 aa, and to Thermoanaerobacter tengcongensis membrane-associated lipoprotein involved in thiamine biosynthesis apbe or tte2482 SWALL:Q8R7D3 (EMBL:AE013189) (341 aa) fasta scores: E(): 2.4e-42, 44.25% id in 287 aa
YP_050066.1	Similar to Ralstonia solanacearum AidA SWALL:O30918 (EMBL:AF021840) (167 aa) fasta scores: E(): 2.2e-11, 32.75% id in 174 aa. Expression of aidA in R. solanacearum is acyl-homoserine lactones dependent.
YP_050067.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_050068.1	Similar to Erwinia chrysanthemi SapF protein SWALL:O86191 (EMBL:AJ222649) (269 aa) fasta scores: E(): 5.2e-80, 88.8% id in 268 aa, and to Salmonella typhimurium peptide transport system ATP-binding protein SapF or stm1696 SWALL:SAPF_SALTY (SWALL:P36638) (268 aa) fasta scores: E(): 9e-75, 80.89% id in 267 aa
YP_050069.1	Similar to Erwinia chrysanthemi SapD protein SWALL:O86190 (EMBL:AJ222649) (330 aa) fasta scores: E(): 1.6e-113, 86.32% id in 329 aa, and to Salmonella typhimurium peptide transport system ATP-binding protein SapD or stm1695 SWALL:SAPD_SALTY (SWALL:P36636) (330 aa) fasta scores: E(): 6.3e-111, 85.36% id in 328 aa
YP_050070.1	Similar to Erwinia chrysanthemi SapC protein SWALL:O86189 (EMBL:AJ222649) (296 aa) fasta scores: E(): 1.5e-89, 78.37% id in 296 aa, and to Salmonella typhimurium, and Salmonella typhi peptide transport system permease protein SapC or stm1694 or sty1357 SWALL:SAPC_SALTY (SWALL:P36669) (296 aa) fasta scores: E(): 2.5e-87, 75.33% id in 296 aa
YP_050071.1	Similar to Erwinia chrysanthemi SapB protein SWALL:O86188 (EMBL:AJ222649) (313 aa) fasta scores: E(): 2.2e-84, 71.65% id in 321 aa, and to Salmonella typhimurium, and Salmonella typhi peptide transport system permease protein SapB or stm1693 or sty1368 SWALL:SAPB_SALTY (SWALL:P36668) (321 aa) fasta scores: E(): 9.2e-94, 73.2% id in 321 aa
YP_050072.1	Similar to Erwinia chrysanthemi SapA protein SWALL:O86187 (EMBL:AJ222649) (540 aa) fasta scores: E(): 1.5e-178, 80.92% id in 540 aa, and to Salmonella typhimurium peptide transport periplasmic protein SapA precursor or stm1692 SWALL:SAPA_SALTY (SWALL:P36634) (549 aa) fasta scores: E(): 6.1e-161, 71.4% id in 535 aa
YP_050073.1	Similar to Rhizobium loti probable transcriptional regulator mll2472 SWALL:Q98IC0 (EMBL:AP002999) (298 aa) fasta scores: E(): 3.8e-61, 58.9% id in 292 aa, and to Xanthomonas campestris transcriptional regulator xcc4174 SWALL:Q8P3A2 (EMBL:AE012543) (303 aa) fasta scores: E(): 2.1e-60, 57.14% id in 294 aa
YP_050074.1	Similar to Rhizobium loti short-chain oxidoreductase mlr2473 SWALL:Q98IB9 (EMBL:AP002999) (276 aa) fasta scores: E(): 4.8e-55, 57.87% id in 273 aa, and to Xanthomonas campestris short chain oxidoreductase xcc4175 SWALL:Q8P3A1 (EMBL:AE012543) (290 aa) fasta scores: E(): 3.6e-51, 54.44% id in 270 aa
YP_050075.1	Similar to Erwinia carotovora endoglucanase V precursor CelV SWALL:GUNV_ERWCA (SWALL:Q47096) (505 aa) fasta scores: E(): 9.2e-190, 94.65% id in 505 aa
YP_050076.1	transcriptional activator for pspABCE which are induced in response to phage proteins, membrane altering stresses, and impaired proton expor
YP_050077.1	involved in maintaining membrane potential under membrane stress conditions; also acts as a negative transcriptional regulator of the phage shock protein (psp) operon(pspABCDE) by regulating the transcriptional activator PspF
YP_050078.1	acts together with PspC to induce psp operon during infection with phage, exposure to ethanol or osmotic shock; forms a complex with PspA and C; PspC is required for PspAB binding
YP_050079.1	with PsbB forms toxin/antitoxin pair; activates the psp operon in response to phage infection, exposure to ethanol or osmotic shock
YP_050080.1	Similar to Yersinia enterocolitica hypothetical 52.6 kDa protein ycjX SWALL:Q9F4H0 (EMBL:AY008264) (465 aa) fasta scores: E(): 4.4e-166, 81.93% id in 465 aa, and to Escherichia coli hypothetical protein ycjx or b1321 SWALL:YCJX_ECOLI (SWALL:P76046) (465 aa) fasta scores: E(): 1.1e-154, 76.34% id in 465 aa
YP_050081.1	Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ycjf or b1322 or c1794 SWALL:YCJF_ECOLI (SWALL:P45525) (353 aa) fasta scores: E(): 1.2e-102, 75.28% id in 348 aa, and to Shigella flexneri orf, conserved hypothetical protein ycjf or sf1328 SWALL:AAN42934 (EMBL:AE015159) (353 aa) fasta scores: E(): 1.5e-102, 75% id in 348 aa
YP_050082.1	Similar to Deinococcus radiodurans arge/dape/acy1 family protein dr2025 SWALL:Q9RSU7 (EMBL:AE002039) (459 aa) fasta scores: E(): 3.4e-22, 29.93% id in 471 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1111 SWALL:BAC13067 (EMBL:AP004596) (453 aa) fasta scores: E(): 8.2e-21, 29.91% id in 478 aa
YP_050083.1	regulates genes involved in the biosynthesis and transport of aromatic amino acids
YP_050084.1	antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein
YP_050085.1	Similar to Yersinia pestis hypothetical protein ypo2340 or y1992 SWALL:Q8ZE44 (EMBL:AJ414152) (256 aa) fasta scores: E(): 5.7e-69, 73.93% id in 234 aa, and to Shigella dysenteriae YcjI SWALL:Q9LA26 (EMBL:AF153317) (262 aa) fasta scores: E(): 1.4e-67, 70.08% id in 234 aa
YP_050086.1	Similar to Escherichia coli periplasmic murein peptide-binding protein precursor MppA or b1329 SWALL:MPPA_ECOLI (SWALL:P77348) (537 aa) fasta scores: E(): 1.5e-156, 72.11% id in 538 aa
YP_050087.1	Similar to Salmonella typhimurium zinc transport protein ZntB or stm1656 SWALL:Q9EYX5 (EMBL:AF308568) (327 aa) fasta scores: E(): 2.3e-86, 63.3% id in 327 aa, and to Yersinia pestis hypothetical protein y1994 SWALL:AAM85560 (EMBL:AE013802) (337 aa) fasta scores: E(): 8.6e-94, 72.36% id in 322 aa
YP_050088.1	no significant database matches
YP_050089.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_050090.1	Similar to Escherichia coli colicin E5 Col SWALL:CEA5_ECOLI (SWALL:P18000) (180 aa) fasta scores: E(): 4.3e-29, 63.5% id in 137 aa, and to Pseudomonas aeruginosa pyocin protein pa3866 SWALL:Q9HXE0 (EMBL:AE004804) (764 aa) fasta scores: E(): 5e-13, 58.06% id in 93 aa
YP_050091.1	Similar to Escherichia coli colicin E5 Immunity protein Imm SWALL:IMM5_ECOLI (SWALL:P13476) (83 aa) fasta scores: E(): 2.5e-13, 58.53% id in 82 aa
YP_050092.1	Similar to Vibrio cholerae hypothetical protein Vca0935 SWALL:Q9KL14 (EMBL:AE004420) (118 aa) fasta scores: E(): 1.3e-08, 37.5% id in 88 aa, and to Streptococcus pneumoniae conserved hypothetical protein spr0927 SWALL:AAK99731 (EMBL:AE008465) (156 aa) fasta scores: E(): 7, 32.53% id in 83 aa
YP_050093.1	Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ydbj precursor ydbj or b1378.1 or c1825 SWALL:YDBJ_ECOLI (SWALL:P52646) (88 aa) fasta scores: E(): 3e-09, 43.61% id in 94 aa, and to Yersinia pestis  lipoprotein ypo2331 SWALL:Q8ZE53 (EMBL:AJ414152) (113 aa) fasta scores: E(): 1.6e-06, 34.51% id in 113 aa
YP_050094.1	Catalyzes the reduction of sulfopyruvate to (R)-sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynthes
YP_050095.1	Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 9.2e-69, 40.31% id in 501 aa. Also similar to ECA2002 (64.808% id in 520 aa overlap)
YP_050096.1	Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 1.7e-71, 41.82% id in 514 aa. Also similar to ECA2001 (64.808% id in 520 aa overlap)
YP_050097.1	Similar to Yersinia pestis hypothetical protein y2005 SWALL:AAM85571 (EMBL:AE013803) (898 aa) fasta scores: E(): 1e-188, 52.6% id in 865 aa, and to Escherichia coli O6 hypothetical protein ydbh or c1828 SWALL:AAN80292 (EMBL:AE016760) (879 aa) fasta scores: E(): 2.9e-148, 44.01% id in 861 aa
YP_050098.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ynbe or b1382 or c1829 or sf1816 SWALL:YNBE_ECOLI (SWALL:P76075) (61 aa) fasta scores: E(): 2.7e-10, 73.21% id in 56 aa, and to Salmonella typhimurium, and Salmonella typhi  outer membrane lipoprotein ynbe or stm1645 or sty1424 SWALL:Q8XEM6 (EMBL:AE008772) (63 aa) fasta scores: E(): 1.5e-09, 60.65% id in 61 aa
YP_050099.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_050100.2	involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain
YP_050101.1	Similar to Pseudomonas aeruginosa staphylolytic protease preproenzyme LasA pa1872 SWALL:P72166 (EMBL:U68175) (263 aa) fasta scores: E(): 1.4e-21, 43.6% id in 266 aa, and to Xanthomonas axonopodis hypothetical protein Xac0112 SWALL:Q8PR54 (EMBL:AE011634) (263 aa) fasta scores: E(): 5.6e-20, 43.89% id in 262 aa
YP_050102.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2567 SWALL:Q9I0R8 (EMBL:AE004685) (587 aa) fasta scores: E(): 1.7e-61, 32.99% id in 582 aa, and to Xanthomonas campestris hypothetical protein Xcc1777 SWALL:Q8P9S1 (EMBL:AE012279) (618 aa) fasta scores: E(): 2e-57, 32.88% id in 590 aa
YP_050103.1	Similar to Shigella flexneri orf, conserved hypothetical protein sf1619 SWALL:AAN43202 (EMBL:AE015183) (273 aa) fasta scores: E(): 1.1e-59, 57.35% id in 272 aa, and to Escherichia coli  protease ydgd precursor ydgd or b1598 SWALL:YDGD_ECOLI (SWALL:P76176) (273 aa) fasta scores: E(): 1.8e-59, 57.35% id in 272 aa
YP_050104.1	Similar to Escherichia coli O157:H7 hypothetical protein z1678 or ecs1422 SWALL:Q8X5A9 (EMBL:AE005315) (103 aa) fasta scores: E(): 0.0022, 28.12% id in 96 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1040 SWALL:AAN42662 (EMBL:AE015132) (103 aa) fasta scores: E(): 0.0031, 27.08% id in 96 aa
YP_050105.2	required for growth and survival under moderately acid conditions
YP_050106.1	Similar to Escherichia coli sensor protein RstB or UspT or b1609 SWALL:RSTB_ECOLI (SWALL:P18392) (433 aa) fasta scores: E(): 3.4e-113, 66.5% id in 424 aa
YP_050107.1	response regulator in two-component regulatory system with RstB
YP_050108.1	Similar to Listeria monocytogenes hypothetical protein Lmo1135 SWALL:Q8Y7Y4 (EMBL:AL591978) (383 aa) fasta scores: E(): 0.00071, 21.26% id in 395 aa
YP_050109.1	Similar to Xanthomonas axonopodis hypothetical protein Xac3032 SWALL:Q8PI66 (EMBL:AE011945) (220 aa) fasta scores: E(): 3.7e-08, 25.78% id in 190 aa, and to Xylella fastidiosa hypothetical protein Xf1840 SWALL:Q9PCE1 (EMBL:AE004005) (237 aa) fasta scores: E(): 6.4e-13, 29.89% id in 194 aa
YP_050110.1	Similar to Rhizobium loti hypothetical protein Mlr7774 SWALL:Q984Z9 (EMBL:AP003012) (263 aa) fasta scores: E(): 7.7e-06, 25.4% id in 248 aa
YP_050111.1	Similar to Bradyrhizobium japonicum ECF sigma factor EcfA or bll6484 SWALL:BAC51749 (EMBL:AJ304855) (172 aa) fasta scores: E(): 2.1e-13, 36.66% id in 150 aa, and to Thiobacillus novellus RNA polymerase sigma factor SigE SWALL:Q9LA18 (EMBL:AF154565) (172 aa) fasta scores: E(): 1.8e-09, 34.26% id in 143 aa
YP_050112.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical oxidoreductase ydgb or b1606 or z2606 or ecs2312 SWALL:YDGB_ECOLI (SWALL:P52109) (240 aa) fasta scores: E(): 8.5e-56, 66.09% id in 233 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa3437 SWALL:Q9HYG9 (EMBL:AE004764) (234 aa) fasta scores: E(): 7.6e-36, 47.08% id in 240 aa
YP_050113.1	no significant database matches
YP_050114.1	no significant database matches
YP_050115.1	role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport
YP_050116.1	Similar to Escherichia coli calcium/proton antiporter ChaA or b1216 SWALL:CHAA_ECOLI (SWALL:P31801) (366 aa) fasta scores: E(): 1.8e-109, 78.57% id in 364 aa
YP_050117.1	Similar to Paramecium primaurelia g surface antigen gene, 5' end SWALL:AAA29444 (EMBL:M11194) (48 aa) fasta scores: E(): 7.5, 37.2% id in 43 aa
YP_050118.1	Similar to Vibrio vulnificus vulnibactin utilization protein ViuB or vv20837 SWALL:AAO07760 (EMBL:U32676) (271 aa) fasta scores: E(): 1.2e-26, 34.48% id in 261 aa, and to Stigmatella aurantiaca MxcB mxcB SWALL:Q9F641 (EMBL:AF299336) (270 aa) fasta scores: E(): 2.1e-21, 33.84% id in 260 aa
YP_050119.1	Doubtful CDS. No significant database matches
YP_050120.1	Similar to Escherichia coli cation transport protein ChaC or b1218 SWALL:CHAC_ECOLI (SWALL:P39163) (231 aa) fasta scores: E(): 3.3e-55, 60.18% id in 216 aa
YP_050121.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa4390 SWALL:Q9HW14 (EMBL:AE004854) (335 aa) fasta scores: E(): 2.8e-59, 43.23% id in 340 aa, and to Pseudomonas putida conserved hypothetical protein pp1357 SWALL:AAN66980 (EMBL:AE016779) (375 aa) fasta scores: E(): 6.3e-60, 44.97% id in 338 aa
YP_050122.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa4338 SWALL:Q9HW63 (EMBL:AE004850) (426 aa) fasta scores: E(): 4.1e-97, 57.42% id in 411 aa, and to Bacteroides thetaiotaomicron acyltransferase bt1546 SWALL:AAO76653 (EMBL:AE016932) (335 aa) fasta scores: E(): 2.4e-05, 28.27% id in 237 aa
YP_050123.1	two-component response regulator NarL; phosphorylated by NarQ; activates transcription of nitrate and nitrite reductase genes and represses transcription of fumarate reductase
YP_050124.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri nitrate/nitrite sensor protein NarX or NarR or b1222 or z1998 or ecs1727 or sf1225 SWALL:NARX_ECOLI (SWALL:P10956) (598 aa) fasta scores: E(): 1.5e-115, 54.06% id in 603 aa
YP_050125.1	Similar to Escherichia coli nitrite extrusion protein 1 NarK or b1223 SWALL:NARK_ECOLI (SWALL:P10903) (463 aa) fasta scores: E(): 3.6e-131, 71.08% id in 460 aa
YP_050126.1	Similar to Escherichia coli respiratory nitrate reductase 1 alpha chain NarG or NarC or BisD or b1224 SWALL:NARG_ECOLI (SWALL:P09152) (1246 aa) fasta scores: E(): 0, 83.77% id in 1245 aa
YP_050127.1	Similar to Escherichia coli respiratory nitrate reductase 1 beta chain NarH or b1225 SWALL:NARH_ECOLI (SWALL:P11349) (512 aa) fasta scores: E(): 6.2e-178, 86.74% id in 513 aa
YP_050128.1	Similar to Escherichia coli, and Escherichia coli O157:H7 respiratory nitrate reductase 1 delta chain NarJ or b1226 or z2003 or ecs1731 SWALL:NARJ_ECOLI (SWALL:P11351) (236 aa) fasta scores: E(): 8.1e-56, 62.18% id in 238 aa
YP_050129.1	Similar to Escherichia coli respiratory nitrate reductase 1 gamma chain NarI or ChlI or b1227 SWALL:NARI_ECOLI (SWALL:P11350) (225 aa) fasta scores: E(): 5.6e-71, 77.67% id in 224 aa
YP_050130.1	Similar to Erwinia chrysanthemi PecM protein SWALL:PECM_ERWCH (SWALL:P42194) (297 aa) fasta scores: E(): 4e-39, 42.75% id in 276 aa
YP_050131.1	Similar to Erwinia chrysanthemi regulatory protein PecS SWALL:PECS_ERWCH (SWALL:P42195) (166 aa) fasta scores: E(): 5.5e-25, 48.76% id in 162 aa
YP_050132.1	Similar to Vibrio cholerae hypothetical protein Vca0330 SWALL:Q9KMK9 (EMBL:AE004371) (162 aa) fasta scores: E(): 1.2e-32, 56.57% id in 152 aa, and to Vibrio vulnificus predicted redox protein vv12348 SWALL:AAO10722 (EMBL:AE016804) (153 aa) fasta scores: E(): 1e-30, 53.94% id in 152 aa
YP_050133.1	Similar to Agrobacterium tumefaciens hypothetical protein atu3948 or agr_l_1808 SWALL:Q8U8Z0 (EMBL:AE009325) (397 aa) fasta scores: E(): 2.3e-76, 51.96% id in 381 aa, and to Ralstonia solanacearum hypothetical protein rsc2709 or rs00013 SWALL:Q8XVW8 (EMBL:AL646071) (376 aa) fasta scores: E(): 1.1e-66, 48.8% id in 375 aa
YP_050134.1	Similar to Agrobacterium tumefaciens ornithine cyclodeaminase ArcB or Ocd SWALL:OCD_AGRT4 (SWALL:Q59701) (356 aa) fasta scores: E(): 5.7e-15, 27.42% id in 299 aa, and to Rhizobium meliloti ornithine cyclodeaminase 1 Ocd1 or rb0419 or smb20433 SWALL:OCD1_RHIME (SWALL:P58338) (329 aa) fasta scores: E(): 1.6e-25, 35.49% id in 324 aa
YP_050135.1	catalyzes the formation of 2-oxobutanoate from L-threonine or the formation of pyruvate from serine
YP_050136.1	Similar to Bradyrhizobium japonicum Bll7235 protein SWALL:BAC52500 (EMBL:AP005961) (219 aa) fasta scores: E(): 5.9e-45, 62.5% id in 200 aa, and to Ralstonia solanacearum hypothetical protein rsp1517 or rs04794 SWALL:Q8XPW9 (EMBL:AL646085) (214 aa) fasta scores: E(): 4.9e-34, 49.01% id in 202 aa
YP_050137.1	no significant database matches
YP_050138.1	no significant database matches
YP_050139.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeaq or b1795 or c2200 or z2837 or ecs2504 SWALL:YEAQ_ECOLI (SWALL:P76246) (82 aa) fasta scores: E(): 5.4e-25, 85.18% id in 81 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2  membrane protein SWALL:AAO68813 (EMBL:AE016838) (82 aa) fasta scores: E(): 9.8e-25, 83.95% id in 81 aa
YP_050140.1	Similar to Streptomyces glaucescens StrP protein SWALL:Q54262 (EMBL:X78974) (358 aa) fasta scores: E(): 8.5e-33, 35.98% id in 339 aa, and to Agrobacterium tumefaciens udp-glucose 4-epimerase gale or atu4801 or agr_l_161 SWALL:Q8U6K6 (EMBL:AE009408) (378 aa) fasta scores: E(): 3.2e-31, 33.81% id in 343 aa
YP_050141.1	Its N-terminal half is similar to several aminotransferases including Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1.6e-29, 32.31% id in 359 aa, and to Streptomyces globisporus amino transferase SWALL:AAL06659 (EMBL:AY048670) (410 aa) fasta scores: E(): 9.5e-29, 32.32% id in 396 aa. Its C-terminal half is similar to many chitin synthases such as Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to Emericella nidulans chitin synthase a chsa or chs2 SWALL:CHSA_EMENI (SWALL:P30584) (1013 aa) fasta scores: E(): 5.3e-19, 24.18% id in 550 aa; Similar to Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to Emericella nidulans chitin synthase a chsa or chs2 SWALL:CHSA_EMENI (SWALL:P30584) (1013 aa) fasta scores: E(): 5.3e-19, 24.18% id in 550 aa
YP_050142.1	Similar to Ralstonia solanacearum hypothetical protein rsc1651 or rs04028 SWALL:Q8XYV5 (EMBL:AL646065) (394 aa) fasta scores: E(): 5.6e-36, 34.18% id in 392 aa, and to Caulobacter crescentus hypothetical protein Cc1979 SWALL:Q9A6V4 (EMBL:AE005871) (407 aa) fasta scores: E(): 1.3e-16, 25.77% id in 388 aa
YP_050143.1	Similar to Ralstonia solanacearum probable signal peptide protein rsc1650 or rs04027 SWALL:Q8XYV6 (EMBL:AL646065) (538 aa) fasta scores: E(): 1.4e-41, 34.04% id in 376 aa, and to Rhizobium loti hypothetical protein Mll5453 SWALL:Q98BS0 (EMBL:AP003006) (508 aa) fasta scores: E(): 1.6e-09, 25.22% id in 452 aa
YP_050144.1	Similar to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62203 (EMBL:AF440523) (248 aa) fasta scores: E(): 1.8e-29, 40.67% id in 236 aa, and to Xylella fastidiosa hypothetical protein Xf1787 SWALL:Q9PCJ2 (EMBL:AE004000) (251 aa) fasta scores: E(): 3.3e-29, 38% id in 250 aa
YP_050145.1	Similar to Vibrio vulnificus  threonine efflux protein vv12697 SWALL:AAO11043 (EMBL:AE016806) (211 aa) fasta scores: E(): 2.3e-12, 30.73% id in 205 aa, and to Vibrio cholerae hypothetical protein Vc1421 SWALL:Q9KS40 (EMBL:AE004221) (212 aa) fasta scores: E(): 1.3e-09, 25.51% id in 196 aa
YP_050146.1	Similar to Yersinia pestis putitive ABC-transporter ATP-binding protein ypo2846 SWALL:Q8ZCW2 (EMBL:AJ414154) (361 aa) fasta scores: E(): 7.7e-108, 79.67% id in 364 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa0603 SWALL:Q9I5T5 (EMBL:AE004496) (369 aa) fasta scores: E(): 3.7e-81, 63.3% id in 357 aa
YP_050147.1	Similar to Yersinia pestis  GntR-family regulatory protein ypo2845 or y1389 SWALL:AAM84961 (EMBL:AJ414154) (501 aa) fasta scores: E(): 2.9e-125, 62.92% id in 499 aa, and to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SWALL:MOCR_RHIME (SWALL:P49309) (493 aa) fasta scores: E(): 6.7e-70, 40.98% id in 488 aa
YP_050148.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_050149.1	Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 6e-122, 65.76% id in 482 aa
YP_050150.1	Similar to Pseudomonas putida polyamine ABC transporter, periplasmic polyamine-binding protein pp0412 SWALL:AAN66042 (EMBL:AE016775) (344 aa) fasta scores: E(): 4.2e-81, 57.84% id in 344 aa, and to Yersinia pestis transport system periplasmic protein ypo2843 or y1391 SWALL:Q8ZCW5 (EMBL:AJ414154) (342 aa) fasta scores: E(): 5e-103, 71.84% id in 341 aa
YP_050151.1	Similar to Yersinia pestis  ABC transporter permease ypo2842 SWALL:Q8ZCW6 (EMBL:AJ414154) (421 aa) fasta scores: E(): 2.8e-118, 72.4% id in 424 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter pa0605 SWALL:Q9I5T3 (EMBL:AE004497) (415 aa) fasta scores: E(): 4.5e-85, 54.47% id in 402 aa
YP_050152.1	Similar to Yersinia pestis  ABC transporter permease ypo2841 SWALL:Q8ZCW7 (EMBL:AJ414154) (282 aa) fasta scores: E(): 4.6e-83, 83.64% id in 269 aa, and to Pseudomonas putida polyamine ABC transporter, permease protein pp0414 SWALL:AAN66044 (EMBL:AE016775) (275 aa) fasta scores: E(): 3.4e-63, 65.13% id in 261 aa
YP_050153.1	Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase pa5150 SWALL:Q9HU34 (EMBL:AE004928) (245 aa) fasta scores: E(): 1.2e-79, 82.04% id in 245 aa, and to Bradyrhizobium japonicum short-chain alcohol dehydrogenase FixR or bll2623 SWALL:BAC47888 (EMBL:AP005944) (250 aa) fasta scores: E(): 2.1e-59, 64.05% id in 242 aa
YP_050154.1	Similar to Methylobacillus flagellatum homoserine kinase ThrB SWALL:KHSE_METFL (SWALL:Q9RAM6) (319 aa) fasta scores: E(): 6.1e-06, 28.8% id in 302 aa, and to Rhizobium loti homoserine kinase mlr7168 SWALL:Q986X7 (EMBL:AP003011) (364 aa) fasta scores: E(): 7e-40, 39.21% id in 329 aa
YP_050155.1	Similar to Rhizobium meliloti  aminotransferase ra0973 or sma1761 SWALL:Q92YB1 (EMBL:AE007283) (438 aa) fasta scores: E(): 7.6e-92, 58.13% id in 418 aa, and to Agrobacterium tumefaciens pyridoxal phosphate aminotransferase atu5251 or agr_pat_358 SWALL:Q8UK72 (EMBL:AE008947) (464 aa) fasta scores: E(): 3.4e-74, 51.09% id in 411 aa
YP_050156.1	Similar to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 1.2e-52, 42.21% id in 514 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis I CheD3 or rsp1406 or rs02052 SWALL:Q8XQ80 (EMBL:AL646084) (608 aa) fasta scores: E(): 8.4e-59, 45.31% id in 512 aa
YP_050157.1	Similar to Salmonella typhimurium  phosphatase stm3595 SWALL:Q8ZLD5 (EMBL:AE008866) (423 aa) fasta scores: E(): 2.3e-84, 55.37% id in 437 aa
YP_050158.1	Similar to Escherichia coli D-methionine transport ATP-binding protein MetN or Abc or b0199 SWALL:METN_ECOLI (SWALL:P30750) (343 aa) fasta scores: E(): 3.3e-48, 42.89% id in 345 aa, and to Salmonella typhimurium  ABC-type transport system ATPase component/cell division protein SfbB or stm0511 SWALL:Q8ZR89 (EMBL:AE008719) (338 aa) fasta scores: E(): 1.2e-77, 65.97% id in 338 aa
YP_050159.1	Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbC SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 5.5e-61, 81.65% id in 218 aa, and to Oceanobacillus iheyensis ABC transporter permease ob2099 SWALL:Q8EPK2 (EMBL:AP004600) (221 aa) fasta scores: E(): 1.1e-40, 57.4% id in 216 aa
YP_050160.1	Similar to Amycolatopsis sp N-acylamino acid racemase aaaR SWALL:Q44244 (EMBL:D30738) (368 aa) fasta scores: E(): 5.9e-54, 43.09% id in 362 aa, and to Bacillus subtilis O-succinylbenzoate-CoA synthase menC SWALL:O34514 (EMBL:AF008220) (371 aa) fasta scores: E(): 4e-66, 48.5% id in 369 aa
YP_050161.1	Similar to Salmonella typhimurium, and Salmonella enteritidis  ABC-type transport system ATPase component/cell division protein sfba or stm0510 SWALL:Q9S4Z1 (EMBL:AE008719) (276 aa) fasta scores: E(): 4.6e-58, 63.32% id in 259 aa, and to Oceanobacillus iheyensis lipoprotein ob2098 SWALL:BAC14054 (EMBL:AP004600) (274 aa) fasta scores: E(): 1.2e-37, 44.65% id in 262 aa
YP_050162.1	Similar to Bacteriophage lambda Bor lipoprotein precursor boR SWALL:BOR_LAMBD (SWALL:P26814) (97 aa) fasta scores: E(): 9e-26, 74.22% id in 97 aa, and to Escherichia coli Iss SWALL:Q9XDL2 (EMBL:AF042279) (102 aa) fasta scores: E(): 1.1e-25, 71.87% id in 96 aa
YP_050163.1	Similar to Pseudomonas sp. KIE171  permease ipuG SWALL:Q936S6 (EMBL:AJ311159) (476 aa) fasta scores: E(): 4.2e-47, 34.95% id in 472 aa, and to Pseudomonas aeruginosa  amino acid permease SWALL:AAN62240 (EMBL:AF440524) (476 aa) fasta scores: E(): 2.5e-45, 32.77% id in 476 aa
YP_050164.1	Similar to Oceanobacillus iheyensis transcriptional regulator ob0289 SWALL:BAC12245 (EMBL:AP004594) (184 aa) fasta scores: E(): 0.0055, 20.87% id in 182 aa, and to Streptomyces coelicolor  transcriptional regulator sco6121 or sc9b2.08C SWALL:Q9Z551 (EMBL:AL939126) (192 aa) fasta scores: E(): 0.011, 29.47% id in 95 aa
YP_050165.1	Similar to Pseudomonas putida major facilitator family transporter pp3368 SWALL:AAN68972 (EMBL:AE016786) (394 aa) fasta scores: E(): 6.5e-73, 53.29% id in 379 aa, and to Xanthomonas axonopodis mfs transporter araj or xac1363 SWALL:Q8PMR3 (EMBL:AE011767) (393 aa) fasta scores: E(): 5.5e-71, 51.59% id in 376 aa
YP_050166.1	Similar to Mycobacterium leprae  cytochrome P450 ml2088 SWALL:Q9CBE7 (EMBL:AL583924) (434 aa) fasta scores: E(): 7.1e-22, 26.3% id in 422 aa, and to Bacillus subtilis cytochrome P450 YjiB SWALL:YJIB_BACSU (SWALL:O34374) (396 aa) fasta scores: E(): 1.8e-20, 27.11% id in 343 aa
YP_050167.1	Similar to Citrobacter braakii cindoxin cinC SWALL:Q8VQF4 (EMBL:AF456128) (154 aa) fasta scores: E(): 3.2e-13, 37.5% id in 144 aa, and to Escherichia coli protein mioc mioc or b3742 SWALL:MIOC_ECOLI (SWALL:P03817) (146 aa) fasta scores: E(): 8.1e-09, 33.89% id in 118 aa
YP_050168.1	Similar to Salvelinus fontinalis NADPH:adrenodoxin oxidoreductase, mitochondrial precursor SWALL:ADRO_SALFO (SWALL:P82861) (498 aa) fasta scores: E(): 1.5e-23, 31.73% id in 460 aa, and to Rhodococcus rhodochrous adrenodoxin reductase-like XplB SWALL:Q8GPH8 (EMBL:AF449421) (425 aa) fasta scores: E(): 2.2e-52, 40.32% id in 429 aa
YP_050169.1	Similar to Bradyrhizobium japonicum Bll7601 protein bll7601 SWALL:BAC52866 (EMBL:AP005962) (461 aa) fasta scores: E(): 4.6e-94, 52.19% id in 456 aa, and to Streptomyces coelicolor  peptidase sco5185 or 2sc3b6.09 SWALL:Q9FCK3 (EMBL:AL939122) (470 aa) fasta scores: E(): 1.8e-25, 29.97% id in 457 aa
YP_050170.1	Similar to Escherichia coli cyn operon transcriptional activator CynR or b0338 SWALL:CYNR_ECOLI (SWALL:P27111) (311 aa) fasta scores: E(): 4.5e-14, 29.51% id in 288 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll3773 SWALL:BAC49038 (EMBL:AP005948) (312 aa) fasta scores: E(): 9e-17, 30.79% id in 302 aa
YP_050171.1	Similar to Erwinia amylovora HrcU SWALL:Q46649 (EMBL:L25828) (360 aa) fasta scores: E(): 1e-95, 66.94% id in 360 aa, and to Pantoea agglomerans HrcU protein HrcU SWALL:Q47859 (EMBL:X99768) (360 aa) fasta scores: E(): 5.4e-92, 64.34% id in 359 aa
YP_050172.1	Similar to Erwinia amylovora HrcT SWALL:Q46648 (EMBL:L25828) (265 aa) fasta scores: E(): 2.4e-69, 66.92% id in 257 aa, and to Pantoea agglomerans HrcT protein HrcT SWALL:Q47858 (EMBL:X99768) (265 aa) fasta scores: E(): 4.5e-67, 62.3% id in 260 aa
YP_050173.1	Similar to Erwinia amylovora HrcS SWALL:Q46647 (EMBL:L25828) (86 aa) fasta scores: E(): 2.8e-22, 76.19% id in 84 aa, and to Pantoea agglomerans HrcS protein HrcS SWALL:Q47857 (EMBL:X99768) (83 aa) fasta scores: E(): 2.6e-21, 75.61% id in 82 aa
YP_050174.1	part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response
YP_050175.1	Similar to Erwinia amylovora HrcQ SWALL:Q46645 (EMBL:L25828) (338 aa) fasta scores: E(): 1.8e-11, 34.59% id in 370 aa, and to Pantoea agglomerans HrcQb protein SWALL:Q47855 (EMBL:X99768) (108 aa) fasta scores: E(): 9.8e-11, 46.22% id in 106 aa
YP_050176.1	Similar to Erwinia amylovora HrpP SWALL:Q46644 (EMBL:L25828) (158 aa) fasta scores: E(): 1.6e-06, 36.6% id in 112 aa, and to Pantoea agglomerans HrcQa protein hrcQa SWALL:Q47853 (EMBL:X99768) (157 aa) fasta scores: E(): 8e-06, 28.81% id in 118 aa
YP_050177.1	Similar to Erwinia amylovora HrpO SWALL:Q46643 (EMBL:L25828) (148 aa) fasta scores: E(): 6.5e-09, 41.73% id in 127 aa, and to Pantoea agglomerans HrpO protein SWALL:Q937I2 (EMBL:X99768) (146 aa) fasta scores: E(): 0.0013, 30.7% id in 127 aa
YP_050178.1	Similar to Erwinia amylovora HrcN SWALL:Q46642 (EMBL:L25828) (454 aa) fasta scores: E(): 3.9e-124, 78.7% id in 446 aa, and to Pantoea agglomerans HrcN protein HrcN SWALL:Q937I3 (EMBL:X99768) (454 aa) fasta scores: E(): 4.7e-121, 76.4% id in 445 aa
YP_050179.1	Similar to Erwinia amylovora HrpQ SWALL:Q46641 (EMBL:L25828) (310 aa) fasta scores: E(): 3.4e-50, 48.89% id in 317 aa, and to Pantoea agglomerans HrpQ protein HrpQ SWALL:Q937I4 (EMBL:X99768) (307 aa) fasta scores: E(): 4.9e-47, 46.96% id in 313 aa
YP_050180.1	Similar to Erwinia amylovora harpin secretion protein HrpI SWALL:HRPI_ERWAM (SWALL:P35654) (697 aa) fasta scores: E(): 2e-193, 76.35% id in 702 aa, and to Pantoea agglomerans HrcV protein HrcV SWALL:Q937I5 (EMBL:X99768) (719 aa) fasta scores: E(): 2.2e-196, 75.42% id in 704 aa
YP_050181.1	Similar to Pectobacterium carotovorum subsp. atrosepticum secretion protein HrpJ type III HrpJ SWALL:Q8KM25 (EMBL:AJ496800) (402 aa) fasta scores: E(): 1.2e-121, 90.79% id in 402 aa, and to Erwinia chrysanthemi HrpJ WALL:AAO34609 (EMBL:AY169276) (393 aa) fasta scores: E(): 2.3e-80, 64.59% id in 387 aa
YP_050182.1	Similar to Erwinia chrysanthemi HrpL WALL:Q8KUM5 (EMBL:AF448202) (184 aa) fasta scores: E(): 9.4e-40, 71.42% id in 168 aa, and to Erwinia pyrifoliae sigma factor hrpL SWALL:CAD27523 (EMBL:AJ438881) (182 aa) fasta scores: E(): 1.9e-31, 56.97% id in 165 aa
YP_050183.1	Similar to Erwinia chrysanthemi HrpX SWALL:Q8KUM4 (EMBL:AF448202) (450 aa) fasta scores: E(): 3.4e-115, 68.25% id in 441 aa, and to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 9.5e-100, 56.13% id in 481 aa
YP_050184.1	Similar to Erwinia chrysanthemi HrpY SWALL:Q8KUM3 (EMBL:AF448202) (213 aa) fasta scores: E(): 6.8e-57, 75.94% id in 212 aa, and to Erwinia amylovora response regulator HrpY SWALL:Q9X3S9 (EMBL:AF083877) (213 aa) fasta scores: E(): 1.3e-51, 69.34% id in 212 aa
YP_050185.1	Similar to Erwinia chrysanthemi HrpS SWALL:Q8KUM2 (EMBL:AF448202) (327 aa) fasta scores: E(): 6.8e-80, 74.67% id in 304 aa, and to Erwinia amylovora sigma-54-dependent enhancer-binding protein HrpS SWALL:Q9X3T0 (EMBL:AF083877) (324 aa) fasta scores: E(): 6.8e-66, 61.99% id in 321 aa
YP_050186.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2200 SWALL:Q9I1R7 (EMBL:AE004646) (531 aa) fasta scores: E(): 4e-52, 32.23% id in 518 aa, and to Salmonella typhimurium  diguanylate cyclase/phosphodiesterase domain 2 ylab or stm0468 SWALL:Q8ZRB0 (EMBL:AE008717) (516 aa) fasta scores: E(): 2.3e-34, 29.72% id in 508 aa
YP_050187.1	Doubtful CDS. no significant database matches
YP_050188.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpA SWALL:Q93FZ8 (EMBL:AF302656) (68 aa) fasta scores: E(): 5.7e-21, 100% id in 68 aa, and to Erwinia chrysanthemi HrpA SWALL:Q8KUM1 (EMBL:AF448202) (66 aa) fasta scores: E(): 5.9e-11, 63.63% id in 66 aa
YP_050189.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpB SWALL:Q93FZ7 (EMBL:AF302656) (144 aa) fasta scores: E(): 1.3e-49, 95.1% id in 143 aa, and to Erwinia chrysanthemi HrpB SWALL:Q8KUM0 (EMBL:AF448202) (122 aa) fasta scores: E(): 1.9e-18, 62.03% id in 108 aa
YP_050190.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrcJ SWALL:Q93FZ6 (EMBL:AF302656) (255 aa) fasta scores: E(): 2.1e-90, 95.66% id in 254 aa, and to Erwinia chrysanthemi HrcJ SWALL:Q8KUL9 (EMBL:AF448202) (245 aa) fasta scores: E(): 5.5e-67, 75.94% id in 237 aa
YP_050191.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpD SWALL:Q93FZ5 (EMBL:AF302656) (209 aa) fasta scores: E(): 2.5e-67, 76.52% id in 213 aa, and to Erwinia chrysanthemi HrpD SWALL:Q8KUL8 (EMBL:AF448202) (192 aa) fasta scores: E(): 3.3e-21, 43.14% id in 197 aa
YP_050192.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpE SWALL:Q93FZ4 (EMBL:AF302656) (199 aa) fasta scores: E(): 3.5e-65, 87.37% id in 198 aa, and to Erwinia chrysanthemi HrpE SWALL:Q8KUL7 (EMBL:AF448202) (200 aa) fasta scores: E(): 7.5e-28, 42.85% id in 196 aa
YP_050193.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpF SWALL:Q93FZ3 (EMBL:AF302656) (74 aa) fasta scores: E(): 3.6e-27, 97.29% id in 74 aa, and to Erwinia chrysanthemi HrpF SWALL:P94765 (EMBL:AF501263) (75 aa) fasta scores: E(): 6.1e-19, 72.6% id in 73 aa
YP_050194.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpG SWALL:Q93FZ2 (EMBL:AF302656) (136 aa) fasta scores: E(): 3.7e-48, 87.5% id in 136 aa, and to Erwinia chrysanthemi  secretion protein HrpG SWALL:Q8KWF8 (EMBL:AF411590) (144 aa) fasta scores: E(): 1.1e-22, 49.26% id in 136 aa
YP_050195.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa
YP_050196.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpT SWALL:Q93FZ0 (EMBL:AF302656) (63 aa) fasta scores: E(): 9.6e-22, 84.12% id in 63 aa, and to Erwinia chrysanthemi HrpT precursor SWALL:P94768 (EMBL:AF501263) (61 aa) fasta scores: E(): 6.3e-11, 50.82% id in 61 aa
YP_050197.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpV SWALL:Q93FY9 (EMBL:AF302656) (115 aa) fasta scores: E(): 8.9e-35, 80% id in 115 aa, and to Erwinia chrysanthemi HrpV SWALL:P94769 (EMBL:AF501263) (136 aa) fasta scores: E(): 8.8e-07, 34.51% id in 113 aa
YP_050198.1	Similar to Pectobacterium carotovorum subsp. carotovorum HrpN SWALL:Q93FY8 (EMBL:AF302656) (356 aa) fasta scores: E(): 4e-79, 91.37% id in 371 aa, and to Erwinia carotovora harpin hrpN SWALL:HRPN_ERWCA (SWALL:Q47279) (356 aa) fasta scores: E(): 2.2e-78, 90.83% id in 371 aa
YP_050199.1	Similar to Escherichia coli VgrG protein SWALL:O52679 (EMBL:AF044506) (713 aa) fasta scores: E(): 4.2e-76, 37.78% id in 651 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 1.2e-121, 52.95% id in 676 aa
YP_050200.1	Weakly similar to Xanthomonas oryzae HrpG SWALL:Q938P2 (EMBL:AY049753) (263 aa) fasta scores: E(): 8, 28.07% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1417 SWALL:Q9KS44 (EMBL:AE004220) (286 aa) fasta scores: E(): 1.1e-07, 26.29% id in 251 aa
YP_050201.1	No significant database matches. Strongly similar to ECA4356 (88.084% id) and ECA4431 (87.651% id).
YP_050202.1	Similar to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 3.1e-26, 42.85% id in 224 aa, and to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 1.3e-25, 39.66% id in 237 aa. Also similar to ECA2108 (83.051% id), ECA2109 (72.152% id), ECA4357 (77.637% id) and ECA4430 (80.085% id).
YP_050203.1	Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 6.5e-27, 38.91% id in 239 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 9.8e-25, 40% id in 225 aa
YP_050204.1	Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 7.6e-29, 40.75% id in 238 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 9.1e-28, 43.55% id in 225 aa. Also similar to ECA2107 (72.152% id), ECA2108 (72.152% id), ECA4357 (87.234% id) and ECA4430 (85.470% id).
YP_050205.1	Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 3.1e-16, 58.51% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 8.3e-15, 58.51% id in 94 aa
YP_050206.1	Similar to Erwinia amylovora potential HrpW-specific chaperone SWALL:O87915 (EMBL:U94513) (110 aa) fasta scores: E(): 2e-10, 38.46% id in 104 aa
YP_050207.1	Similar to Erwinia amylovora HrpW protein SWALL:O54508 (EMBL:Y13831) (447 aa) fasta scores: E(): 2.7e-36, 50.67% id in 448 aa, and to Pseudomonas syringae pv. maculicola type III effector hrpwpma SWALL:Q8RP12 (EMBL:AF458044) (424 aa) fasta scores: E(): 4.4e-28, 42.12% id in 470 aa
YP_050208.1	Similar to Erwinia amylovora DspE or DspA SWALL:O54581 (EMBL:U97504) (1838 aa) fasta scores: E(): 1.7e-101, 39.38% id in 1658 aa, and to Pseudomonas syringae avirulence protein AvrE SWALL:O66101 (EMBL:U97505) (1795 aa) fasta scores: E(): 1.6e-30, 28.32% id in 1592 aa
YP_050209.1	Similar to Erwinia amylovora DspF or DspB SWALL:O54621 (EMBL:U97504) (139 aa) fasta scores: E(): 1.8e-19, 42.85% id in 133 aa, and to Pseudomonas syringae avirulence protein AvrF SWALL:O66102 (EMBL:U97505) (129 aa) fasta scores: E(): 1.1e-13, 36.64% id in 131 aa
YP_050210.1	Similar to Rhizobium meliloti  GntR-family transcriptional regulator ra0971 or sma1759 SWALL:Q92YB3 (EMBL:AE007283) (226 aa) fasta scores: E(): 4.3e-29, 45.23% id in 210 aa, and to Brucella suis transcriptional regulator,  bra1096 SWALL:AAN34260 (EMBL:AE014602) (237 aa) fasta scores: E(): 3e-22, 40.65% id in 214 aa
YP_050211.1	Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 1e-144, 65.17% id in 537 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 6.5e-35, 27.27% id in 550 aa
YP_050212.1	Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:AAN38708 (EMBL:AF501263) (3848 aa) fasta scores: E(): 3.6e-110, 43.11% id in 1148 aa
YP_050213.1	Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:P94772 (EMBL:AF501263) (3848 aa) fasta scores: E(): 7.2e-116, 36.39% id in 4407 aa
YP_050216.1	Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 5.8e-07, 62.22% id in 45 aa, and to Enterococcus faecalis V583 hypothetical protein SWALL:AAO82028 (EMBL:AE016954) (72 aa) fasta scores: E(): 0.9, 37.83% id in 37 aa
YP_050217.1	Partial CDS. Similar to the C-terminal regions of several including Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 0.0021, 44.23% id in 52 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 0.0064, 56.75% id in 37 aa
YP_050221.1	Similar to Listeria monocytogenes hypothetical protein Lmo1120 SWALL:Q8Y7Z9 (EMBL:AL591977) (138 aa) fasta scores: E(): 5.3e-24, 54.88% id in 133 aa
YP_050222.1	Similar to Listeria innocua hypothetical protein Lin1089 lin1089 SWALL:Q92CT2 (EMBL:AL596167) (145 aa) fasta scores: E(): 0.0006, 26.47% id in 136 aa, and to Listeria monocytogenes hypothetical protein Lmo1124 SWALL:Q8Y7Z5 (EMBL:AL591977) (145 aa) fasta scores: E(): 0.0071, 22.62% id in 137 aa
YP_050223.1	Similar to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.6e-19, 50.5% id in 295 aa
YP_050227.1	Similar to Pseudomonas putida carbon-nitrogen hydrolase family protein pp3019 SWALL:AAN68627 (EMBL:AE016785) (247 aa) fasta scores: E(): 1.6e-22, 50.35% id in 141 aa, and to Ralstonia solanacearum hypothetical protein rsc0704 or rs01509 SWALL:Q8Y1I6 (EMBL:AL646060) (249 aa) fasta scores: E(): 2.1e-10, 33.33% id in 135 aa
YP_050229.1	Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 7.6e-08, 23.3% id in 266 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2377 SWALL:Q9I1A2 (EMBL:AE004664) (424 aa) fasta scores: E(): 8.8e-43, 39.38% id in 325 aa
YP_050230.1	Similar to Erwinia carotovora periplasmic pectate lyase precursor PelB SWALL:PELP_ERWCA (SWALL:P14005) (568 aa) fasta scores: E(): 0, 97% id in 568 aa, and to Erwinia carotovora pectatelyase SWALL:Q47466 (EMBL:J03673) (568 aa) fasta scores: E(): 0, 96.3% id in 568 aa. Also similar to ECA2402 (PelB) (37.782% id 532 aa overlap)
YP_050231.1	Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein yiiy precursor yiiy or stm4051 or sty3821 SWALL:YIIY_SALTY (SWALL:P43022) (227 aa) fasta scores: E(): 3.1e-05, 23.96% id in 242 aa, and to Yersinia pestis  exported protein ypo3995 or y3833 SWALL:AAM87378 (EMBL:AJ414160) (234 aa) fasta scores: E(): 0.00025, 21.42% id in 238 aa
YP_050232.1	Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor KdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 5e-05, 26.72% id in 247 aa, and to Salmonella typhi secreted protein sty1168 SWALL:Q8Z7M9 (EMBL:AL627269) (230 aa) fasta scores: E(): 5.4e-06, 27.83% id in 273 aa
YP_050235.1	Similar to Oceanobacillus iheyensis hypothetical protein ob3401 SWALL:BAC15357 (EMBL:AP004604) (363 aa) fasta scores: E(): 3.5e-64, 49.69% id in 328 aa, and to Agrobacterium tumefaciens oxidoreductase atu3965 or agr_l_1780 SWALL:Q8U8X3 (EMBL:AE009327) (338 aa) fasta scores: E(): 4.3e-62, 50.75% id in 333 aa
YP_050236.1	catalyzes the hydrolysis of allophanate
YP_050237.1	Similar to the C-terminal region of Saccharomyces cerevisiae urea amidolyase [includes: urea carboxylase and allophanate hydrolase] Dur1,2 or ybr208c or ybr1448 SWALL:DUR1_YEAST (SWALL:P32528) (1835 aa) fasta scores: E(): 0, 52.92% id in 1213 aa, and to Pseudomonas fluorescens urea amidolyase homologue uahA SWALL:Q9XAV3 (EMBL:AJ243652) (1213 aa) fasta scores: E(): 0, 51.47% id in 1224 aa
YP_050238.1	Similar to Streptomyces coelicolor  GntR-family transcriptional regulator sco3810 or scgd3.11C SWALL:Q9XA67 (EMBL:AL939117) (216 aa) fasta scores: E(): 1.1e-13, 32.09% id in 215 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll3877 SWALL:BAC49142 (EMBL:AP005949) (217 aa) fasta scores: E(): 2e-12, 30.88% id in 204 aa
YP_050239.1	Similar to Methylophilus methylotrophus amide-urea binding protein precursor FmdD SWALL:O50371 (EMBL:Y14964) (412 aa) fasta scores: E(): 2e-40, 42.13% id in 375 aa, and to Yersinia pestis  substrate-binding periplasmic transport protein ypo1187 SWALL:Q8ZGU0 (EMBL:AJ414147) (422 aa) fasta scores: E(): 4.4e-144, 85.3% id in 422 aa
YP_050240.1	Similar to Yersinia pestis  branched-chain amino acid transport system, permease component ypo1188 SWALL:Q8ZGT9 (EMBL:AJ414147) (533 aa) fasta scores: E(): 1.5e-133, 73.2% id in 515 aa, and to Pseudomonas putida branched-chain amino acid ABC transporter, permease protein,  pp4842 SWALL:AAN70411 (EMBL:AE016792) (346 aa) fasta scores: E(): 4.7e-95, 77.16% id in 346 aa
YP_050241.1	Similar to Yersinia pestis  branched-chain amino acid transport system, permease component ypo1189 SWALL:Q8ZGT8 (EMBL:AJ414147) (358 aa) fasta scores: E(): 1.8e-115, 85.95% id in 356 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter pa4860 SWALL:Q9HUV3 (EMBL:AE004899) (359 aa) fasta scores: E(): 6.2e-107, 78.49% id in 358 aa
YP_050242.1	Similar to Yersinia pestis  ABC transport ATP-binding subunit ypo1190 or y2999 SWALL:Q8ZGT7 (EMBL:AJ414147) (278 aa) fasta scores: E(): 3.4e-72, 80% id in 255 aa, and to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa4861 SWALL:Q9HUV2 (EMBL:AE004899) (285 aa) fasta scores: E(): 3e-66, 77.82% id in 248 aa
YP_050243.1	Similar to Yersinia pestis  ABC transport ATP-binding subunit ypo1191 SWALL:Q8ZGT6 (EMBL:AJ414147) (232 aa) fasta scores: E(): 7.4e-67, 78.44% id in 232 aa, and to Pseudomonas putida branched-chain amino acid ABC transporter, ATP-binding protein,  pp4845 SWALL:AAN70414 (EMBL:AE016792) (232 aa) fasta scores: E(): 6.4e-68, 81.03% id in 232 aa
YP_050244.1	Similar to Yersinia pestis hypothetical protein ypo1620 or y1780 SWALL:AAM85348 (EMBL:AJ414149) (137 aa) fasta scores: E(): 4.4e-14, 32.11% id in 137 aa, and to Rhizobium loti hypothetical protein Mlr7056 SWALL:Q987H0 (EMBL:AP003010) (136 aa) fasta scores: E(): 10, 27.95% id in 93 aa
YP_050245.1	Similar to Leptospira interrogans conserved hypothetical protein la0782 SWALL:AAN47981 (EMBL:AE011264) (106 aa) fasta scores: E(): 7e-07, 39.02% id in 82 aa, and to Borrelia burgdorferi conserved hypothetical protein bbu09 SWALL:Q9S022 (EMBL:AE001582) (106 aa) fasta scores: E(): 3.3e-06, 33.33% id in 78 aa
YP_050246.1	Partial CDS. Similar to the C-terminal regions of several including Bradyrhizobium japonicum amino acid ABC transporter ATP-binding protein blr2226 SWALL:BAC47491 (EMBL:AP005943) (243 aa) fasta scores: E(): 4e-07, 57.69% id in 52 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 8.5e-07, 53.84% id in 52 aa
YP_050247.1	Similar to Methanosarcina acetivorans methylase ma3534 SWALL:Q8TK82 (EMBL:AE011062) (241 aa) fasta scores: E(): 1.7e-10, 26.01% id in 246 aa, and to Agrobacterium tumefaciens methyltransferase atu1041 or agr_c_1920 SWALL:Q8UGJ6 (EMBL:AE009068) (244 aa) fasta scores: E(): 6.4e-09, 30.18% id in 222 aa
YP_050248.1	Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-57, 66.91% id in 266 aa, and to Rhizobium meliloti probable ABC transporter, ATP-binding protein ra1185 or sma2195 SWALL:Q92XQ9 (EMBL:AE007304) (254 aa) fasta scores: E(): 1.2e-48, 60.64% id in 249 aa
YP_050249.1	Similar to Rhizobium meliloti  ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 5e-36, 39.6% id in 303 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-61, 57.86% id in 299 aa
YP_050250.1	Similar to Streptomyces coelicolor acetyltransferase sco3175 or sce87.26 SWALL:Q9RKB2 (EMBL:AL939115) (161 aa) fasta scores: E(): 2e-09, 36.09% id in 133 aa, and to Agrobacterium tumefaciens acetyltransferase atu3418 or agr_l_2808 SWALL:Q8UAF6 (EMBL:AE009272) (181 aa) fasta scores: E(): 3.9e-25, 50.29% id in 169 aa
YP_050251.1	Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.3e-09, 29.87% id in 231 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 3.4e-50, 50.16% id in 307 aa
YP_050252.1	Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 2.1e-09, 28.69% id in 237 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 1.6e-49, 49.67% id in 304 aa
YP_050253.1	Similar to Listeria monocytogenes hypothetical protein Lmo2343 SWALL:Q8Y4T9 (EMBL:AL591983) (440 aa) fasta scores: E(): 5.7e-99, 56.72% id in 439 aa, and to Pseudomonas syringae monooxygenase, ntaa/snaa/soxa family pspto2425 SWALL:AAO55934 (EMBL:AE016864) (448 aa) fasta scores: E(): 1.6e-98, 56.65% id in 436 aa
YP_050254.1	Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase, reductase component HpaC SWALL:HPAC_ECOLI (SWALL:Q57501) (170 aa) fasta scores: E(): 1.8e-19, 41.66% id in 156 aa, and to Escherichia coli  flavin:NADH reductase ycdh or b1007 SWALL:YCDH_ECOLI (SWALL:P75893) (164 aa) fasta scores: E(): 5e-35, 60.37% id in 159 aa
YP_050255.1	Similar to Zymomonas mobilis amino acid amido hydrolase SWALL:Q9FDK6 (EMBL:AF212041) (380 aa) fasta scores: E(): 2.3e-79, 55.93% id in 379 aa, and to Bacillus subtilis hypothetical protein yxep yxep or lp9H SWALL:YXEP_BACSU (SWALL:P54955) (380 aa) fasta scores: E(): 3.7e-69, 48.41% id in 378 aa
YP_050256.1	Similar to Agrobacterium tumefaciens hypothetical protein atu3421 or agr_l_2803 SWALL:Q8UAF3 (EMBL:AE009272) (335 aa) fasta scores: E(): 1.2e-59, 52.92% id in 325 aa, and to Bacillus subtilis hypothetical protein YtmO SWALL:YTMO_BACSU (SWALL:O34846) (334 aa) fasta scores: E(): 1.3e-44, 44.47% id in 326 aa
YP_050257.1	Similar to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9L910 (EMBL:AF188737) (172 aa) fasta scores: E(): 3.2e-32, 50.29% id in 167 aa, and to Shewanella oneidensis conserved hypothetical protein so1764 SWALL:AAN54818 (EMBL:AE015620) (171 aa) fasta scores: E(): 8.2e-25, 43.97% id in 166 aa
YP_050258.1	Similar to Pseudomonas aeruginosa PapB protein SWALL:Q9F3Y1 (EMBL:AJ277639) (673 aa) fasta scores: E(): 9.1e-146, 57.05% id in 652 aa, and to Escherichia coli alkaline phosphatase isozyme conversion protein precursor Iap or b2753 SWALL:IAP_ECOLI (SWALL:P10423) (345 aa) fasta scores: E(): 4e-24, 35.67% id in 342 aa
YP_050259.1	Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 7.3e-78, 64.34% id in 331 aa
YP_050260.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_050261.1	Similar to Escherichia coli 6-phospho-beta-glucosidase AscB or b2716 SWALL:ASCB_ECOLI (SWALL:P24240) (474 aa) fasta scores: E(): 1.2e-171, 83.26% id in 472 aa
YP_050262.1	Similar to Rhizobium loti N-amidino-scyllo-inosamine-4-phosphate phosphatase mll6642 SWALL:Q988Q3 (EMBL:AP003009) (239 aa) fasta scores: E(): 3.3e-47, 56.39% id in 211 aa, and to Agrobacterium rhizogenes Riorf69 protein riorf69 SWALL:Q9KWB5 (EMBL:AB039932) (263 aa) fasta scores: E(): 4e-44, 48.3% id in 265 aa
YP_050263.1	Similar to Listeria monocytogenes hypothetical protein Lmo0406 SWALL:Q8Y9W3 (EMBL:AL591975) (126 aa) fasta scores: E(): 3e-16, 43.3% id in 127 aa, and to Bacillus subtilis hypothetical protein YyaH SWALL:YYAH_BACSU (SWALL:P37516) (126 aa) fasta scores: E(): 8.2e-14, 36.22% id in 127 aa
YP_050265.1	Similar to Escherichia coli O6 hypothetical protein c3243 SWALL:AAN81695 (EMBL:AE016765) (370 aa) fasta scores: E(): 3.8e-47, 38.31% id in 355 aa, and to Clostridium acetobutylicum polya polymerase related protein cac0753 SWALL:Q97L13 (EMBL:AE007591) (363 aa) fasta scores: E(): 4e-41, 35.24% id in 349 aa
YP_050266.1	Similar to Clostridium acetobutylicum homolog of eukaryotic DNA ligase iii cac0752 SWALL:Q97L14 (EMBL:AE007591) (265 aa) fasta scores: E(): 1.4e-47, 46.71% id in 259 aa
YP_050268.1	Similar to Xylella fastidiosa outer membrane protein xf1739 SWALL:Q9PCN9 (EMBL:AE003997) (385 aa) fasta scores: E(): 1.2e-61, 43.09% id in 355 aa, and to Xanthomonas axonopodis hypothetical protein Xac0250 SWALL:Q8PQS2 (EMBL:AE011649) (351 aa) fasta scores: E(): 1.5e-45, 38.16% id in 338 aa
YP_050269.1	Similar to Pseudomonas syringae conserved hypothetical protein pspto5207 SWALL:AAO58633 (EMBL:AE016874) (131 aa) fasta scores: E(): 1.1, 28.57% id in 77 aa
YP_050270.1	Similar to Rhizobium leguminosarum urease-associated hypothetical protein SWALL:Q8RPY4 (EMBL:AF347070) (135 aa) fasta scores: E(): 1.3e-07, 31.2% id in 125 aa, and to Agrobacterium tumefaciens hypothetical protein atu2403 or agr_c_4360 SWALL:Q8UCT0 (EMBL:AE009188) (141 aa) fasta scores: E(): 2.8e-07, 29.13% id in 127 aa
YP_050272.1	Partial CDS. Similar to several phage integrases including Escherichia coli prophage Cp4-57 integrase inta or slpa or intx or b2622 SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 6.1e-17, 65.88% id in 85 aa, and to Yersinia pestis  prophage integrase ypo1098 SWALL:Q8ZH15 (EMBL:AJ414146) (399 aa) fasta scores: E(): 1.4e-19, 70.11% id in 87 aa
YP_050275.1	Similar to Bacteriophage P4 polarity suppression protein Psu SWALL:VPSU_BPP4 (SWALL:P05460) (190 aa) fasta scores: E(): 6.4e-14, 49.02% id in 102 aa, and to Salmonella typhi phage polarity suppression protein sty4825 SWALL:Q8Z108 (EMBL:AL627283) (188 aa) fasta scores: E(): 9.5e-15, 51.51% id in 99 aa
YP_050276.1	Similar to Escherichia coli O157:H7 integrase protein for prophage cp-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 6.8e-46, 40.35% id in 337 aa, and to Yersinia pestis integrase int or ypo0887 or y3271 SWALL:AAM86821 (EMBL:AJ414145) (404 aa) fasta scores: E(): 5.8e-48, 41.12% id in 338 aa
YP_050277.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_050278.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_050279.1	YchH; transcription activated by CRP (cyclic AMP receptor protein), a global transcription factor involved in regulation of metabolism in enteric bacteria; ychH presents a class II promoter to bind CRP; unknown function
YP_050280.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_050281.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_050282.1	Incorporates lipoproteins in the outer membrane after they are released by the LolA protein
YP_050283.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_050284.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_050285.1	HemK; PrmC; transfers a methyl group from S-adenosylmethionine to amide nitrogen of specific glutamine residues in protein chain release factors PrfA and PrfB
YP_050286.1	Similar to Escherichia coli protein SirB2 or b1213 SWALL:SIB2_ECOLI (SWALL:Q46755) (130 aa) fasta scores: E(): 2.3e-16, 44.61% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi protein SirB2 or stm1774 or sty1899 SWALL:SIB2_SALTY (SWALL:Q9XCQ2) (129 aa) fasta scores: E(): 4.7e-20, 55% id in 120 aa
YP_050287.1	Similar to Escherichia coli, and Escherichia coli O157:H7 protein SirB1 or b1214 or z1985 or ecs1719 SWALL:SIB1_ECOLI (SWALL:P20101) (269 aa) fasta scores: E(): 8.3e-71, 66.17% id in 269 aa
YP_050288.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_050289.1	Similar to the C-terminal regions of many including Escherichia coli transposase insg for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.8e-36, 69.23% id in 143 aa
YP_050290.1	Partial CDS. Similar to the C-terminal regions of many transposases including Escherichia coli transposase for transposon Tn1721 TnpA SWALL:TNP9_ECOLI (SWALL:P51565) (988 aa) fasta scores: E(): 6.4e-25, 83.75% id in 80 aa
YP_050291.1	Similar to the C-terminal region of Xanthomonas campestris VirB6 protein or xcc3294 SWALL:Q8P5P2 (EMBL:AE012446) (373 aa) fasta scores: E(): 0.14, 31.19% id in 109 aa
YP_050292.1	Similar to Xanthomonas campestris hypothetical protein Xcc3128 SWALL:Q8P649 (EMBL:AE012428) (182 aa) fasta scores: E(): 1.4e-09, 35.35% id in 181 aa
YP_050293.1	Similar to Xanthomonas axonopodis hypothetical protein Xac0467 SWALL:Q8PQ61 (EMBL:AE011674) (265 aa) fasta scores: E(): 3.8e-27, 40.09% id in 217 aa
YP_050294.1	Similar to the C-terminal regions of several including Comamonas acidovorans Orf4 SWALL:Q8RS31 (EMBL:AB049198) (323 aa) fasta scores: E(): 1.3e-42, 81.2% id in 133 aa, and to Synechococcus elongatus Tll0382 protein tll0382 SWALL:BAC07934 (EMBL:AP005370) (330 aa) fasta scores: E(): 6.9e-22, 53.98% id in 113 aa
YP_050295.1	Similar to the N-terminal regions of several transposases including Escherichia coli transposase InsG for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.6e-46, 74.32% id in 148 aa, and to Shigella flexneri IS4 orf s0243 SWALL:Q9AFL8 (EMBL:AF348706) (439 aa) fasta scores: E(): 1.6e-46, 74.32% id in 148 aa
YP_050296.1	Similar to Yersinia pestis  exported protein ypo2305 or y2136 SWALL:Q8ZE77 (EMBL:AJ414151) (317 aa) fasta scores: E(): 2.4e-78, 69.9% id in 319 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1625 SWALL:AAN43208 (EMBL:AE015183) (314 aa) fasta scores: E(): 8.2e-74, 67.82% id in 317 aa
YP_050297.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_050298.1	catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme
YP_050299.1	with UspC and UspD is involved in resistance to UV irradiation
YP_050300.1	Global transcription factor that controls the expression of over 100 target genes in response to anoxia
YP_050301.1	Similar to Escherichia coli, and Shigella flexneri methylated-DNA--protein-cysteine methyltransferase Ogt or b1335 or sf1835 SWALL:OGT_ECOLI (SWALL:P09168) (171 aa) fasta scores: E(): 2.8e-38, 59.76% id in 169 aa. Also similar to ECA2454 (40.331% id. in 181 aa overlap)
YP_050302.1	Similar to Oceanobacillus iheyensis hypothetical conserved protein ob2083 SWALL:BAC14039 (EMBL:AP004600) (426 aa) fasta scores: E(): 1.9e-114, 62.97% id in 424 aa, and to Rhizobium meliloti  oxidoreductase protein r00123 or smc04129 SWALL:Q92T57 (EMBL:AL591782) (433 aa) fasta scores: E(): 2.9e-46, 41.68% id in 427 aa
YP_050303.1	Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 5.9e-79, 49.29% id in 428 aa, and to Yersinia pestis  sugar-binding protein ypo1719 or TogB or y1881 SWALL:AAM85448 (EMBL:AJ414150) (430 aa) fasta scores: E(): 2.2e-79, 49.52% id in 422 aa. Also similar to ECA2406(TogB) (50.117% id) and to ECA3551 (47.442% id)
YP_050305.1	Similar to Vibrio cholerae cyclopropane-fatty-acyl-phospholipid synthase vc1122 SWALL:Q9KSY4 (EMBL:AE004192) (432 aa) fasta scores: E(): 3e-82, 55.76% id in 364 aa, and to Shewanella oneidensis cyclopropane-fatty-acyl-phospholipid synthase Cfa or so3379 SWALL:AAN56377 (EMBL:AE015774) (418 aa) fasta scores: E(): 3.1e-77, 49.75% id in 408 aa
YP_050306.1	Similar to Vibrio vulnificus conserved hypothetical protein vv12933 SWALL:AAO11265 (EMBL:AE016806) (255 aa) fasta scores: E(): 8.4e-49, 49.37% id in 241 aa, and to Pseudomonas putida conserved hypothetical protein pp2735 SWALL:AAN68343 (EMBL:AE016784) (269 aa) fasta scores: E(): 8.5e-32, 41.39% id in 244 aa
YP_050307.1	Similar to Vibrio cholerae hypothetical protein Vc1120 SWALL:Q9KSY6 (EMBL:AE004192) (426 aa) fasta scores: E(): 7.9e-99, 58.33% id in 420 aa, and to Shewanella oneidensis conserved hypothetical protein so3381 SWALL:AAN56379 (EMBL:AE015774) (416 aa) fasta scores: E(): 9.4e-90, 56.25% id in 416 aa
YP_050308.1	Similar to Vibrio vulnificus dehydrogenase vv12935 SWALL:AAO11267 (EMBL:AE016806) (241 aa) fasta scores: E(): 2.9e-42, 50.84% id in 236 aa, and to Pseudomonas putida oxidoreductase, short-chain dehydrogenase/reductase family pp2737 SWALL:AAN68345 (EMBL:AE016784) (250 aa) fasta scores: E(): 3.7e-28, 42.21% id in 244 aa
YP_050309.1	Similar to Vibrio vulnificus  transcriptional regulator vv12936 SWALL:Q8D8N5 (EMBL:AE016806) (139 aa) fasta scores: E(): 7.7e-20, 43.28% id in 134 aa, and to Pseudomonas syringae conserved hypothetical protein pspto1120 SWALL:AAO54649 (EMBL:AE016859) (140 aa) fasta scores: E(): 3.5e-17, 38.97% id in 136 aa
YP_050310.1	Similar to Salmonella typhimurium SrfC or stm1595 SWALL:Q9KIJ8 (EMBL:AF231758) (714 aa) fasta scores: E(): 4.2e-23, 30.06% id in 795 aa, and to Yersinia pestis virulence factor y2123 SWALL:AAM85685 (EMBL:AE013815) (846 aa) fasta scores: E(): 2.9e-65, 55.12% id in 849 aa
YP_050311.1	Similar to Salmonella typhimurium SrfB or stm1594 SWALL:Q9KIJ9 (EMBL:AF231758) (993 aa) fasta scores: E(): 0, 57.47% id in 997 aa, and to Yersinia pestis  virulence factor ypo2290 SWALL:Q8ZE92 (EMBL:AJ414151) (1023 aa) fasta scores: E(): 2.1e-214, 73.8% id in 1027 aa
YP_050312.1	Similar to Salmonella typhimurium, and Salmonella typhi SrfA or sty1472 SWALL:Q9KIK0 (EMBL:AF231758) (399 aa) fasta scores: E(): 2.4e-16, 41.06% id in 431 aa, and to Yersinia pestis  virulence factor y2121 SWALL:AAM85682 (EMBL:AE013815) (477 aa) fasta scores: E(): 4.2e-29, 51.02% id in 488 aa
YP_050313.1	Similar to Bacillus subtilis YoaJ SWALL:O34918 (EMBL:AF027868) (232 aa) fasta scores: E(): 4.2e-47, 53.61% id in 235 aa, and to the C-terminal region of Clavibacter michiganensis subsp. sepedonicus cellulase cela SWALL:Q9AF65 (EMBL:AY007311) (727 aa) fasta scores: E(): 2.6e-09, 30.52% id in 190 aa
YP_050314.1	Similar to Escherichia coli, and Shigella flexneri osmotically inducible protein C OsmC or b1482 or sf1743 SWALL:OSMC_ECOLI (SWALL:P23929) (142 aa) fasta scores: E(): 4.2e-45, 87.14% id in 140 aa
YP_050315.1	Similar to Escherichia coli, and Escherichia coli O157:H7 soluble cytochrome b562 precursor CybC or b4236 or z5846 or ecs5213 SWALL:C562_ECOLI (SWALL:P00192) (128 aa) fasta scores: E(): 2.6e-07, 30.46% id in 128 aa, and to Yersinia pestis probable soluble cytochrome b562 2 precursor CybC2 or CybC or ypo3694 or y0169 SWALL:C563_YERPE (SWALL:Q8ZAU2) (128 aa) fasta scores: E(): 4e-07, 31.25% id in 128 aa
YP_050316.1	Similar to Streptomyces coelicolor  TetR-family transcriptional regulatory protein sco4461 or scd65.04C SWALL:Q9F2S8 (EMBL:AL939120) (185 aa) fasta scores: E(): 3e-25, 42.68% id in 164 aa, and to Escherichia coli hypothetical protein ybjk or b0846 SWALL:YBJK_ECOLI (SWALL:P75811) (178 aa) fasta scores: E(): 5.6e-19, 38.69% id in 168 aa
YP_050317.1	Similar to Salmonella typhimurium  transport protein stm0868 SWALL:Q8ZQK6 (EMBL:AE008736) (403 aa) fasta scores: E(): 1.8e-64, 46.83% id in 395 aa, and to Escherichia coli hypothetical protein ybjj ybjj or b0845 SWALL:YBJJ_ECOLI (SWALL:P75810) (402 aa) fasta scores: E(): 9.3e-64, 46.26% id in 402 aa
YP_050318.1	Similar to Listeria monocytogenes hypothetical protein Lmo0624 SWALL:Q8Y9A8 (EMBL:AL591976) (147 aa) fasta scores: E(): 2.1e-11, 37.08% id in 151 aa, and to Bacillus subtilis YycN protein yycN SWALL:O32293 (EMBL:Z99124) (156 aa) fasta scores: E(): 2.5e-10, 31.41% id in 156 aa
YP_050320.1	Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.4e-48, 50.98% id in 355 aa, and to Ralstonia solanacearum  methyl-accepting chemotaxis transmembrane protein rsc0606 or rs06104 SWALL:Q8Y1T3 (EMBL:AL646060) (617 aa) fasta scores: E(): 1.2e-54, 39.73% id in 594 aa
YP_050321.1	specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_050322.1	Similar to Escherichia coli hypothetical protein yjbd or b4023 SWALL:YJBD_ECOLI (SWALL:P32685) (90 aa) fasta scores: E(): 1.2e-16, 65.9% id in 88 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO71585 (EMBL:AE016848) (90 aa) fasta scores: E(): 1.3e-16, 63.63% id in 88 aa
YP_050324.1	Similar to Escherichia coli O6  oxidoreductase c0409 SWALL:AAN78890 (EMBL:AE016756) (329 aa) fasta scores: E(): 3.6e-62, 56.27% id in 311 aa, and to Oceanobacillus iheyensis NADH-dependent flavin oxidoreductase ob3315 SWALL:BAC15271 (EMBL:AP004604) (373 aa) fasta scores: E(): 4.8e-55, 42.81% id in 369 aa
YP_050325.1	Similar to Escherichia coli O6 hypothetical protein ycjy c1801 SWALL:Q8FHQ8 (EMBL:AE016760) (310 aa) fasta scores: E(): 3.8e-49, 47.11% id in 295 aa, and to Vibrio parahaemolyticus hypothetical protein vp1677 SWALL:BAC59940 (EMBL:AP005078) (339 aa) fasta scores: E(): 1.9e-45, 46.23% id in 292 aa
YP_050326.1	Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.5e-69, 61.01% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1471 or rs03073 SWALL:Q8XQ15 (EMBL:AL646085) (297 aa) fasta scores: E(): 2.1e-64, 57.14% id in 294 aa
YP_050327.1	Similar to uncultured bacterium esterase SWALL:Q9KIU0 (EMBL:AF223648) (438 aa) fasta scores: E(): 5.5e-34, 42.48% id in 306 aa, and to Clostridium acetobutylicum carboxyl esterase, a/b hydrolase cap0097 SWALL:Q97TK4 (EMBL:AE001438) (299 aa) fasta scores: E(): 1e-42, 42.12% id in 292 aa
YP_050328.1	Similar to Xanthomonas axonopodis hypothetical protein Xac2153 SWALL:Q8PKL8 (EMBL:AE011852) (196 aa) fasta scores: E(): 3.6e-35, 45.69% id in 186 aa, and to Saccharomyces cerevisiae hypothetical 22.0 kDa protein in hxt11-hxt8 intergenic region yjl217w or j0226 or hrc198 SWALL:YJV7_YEAST (SWALL:P40893) (198 aa) fasta scores: E(): 1.2e-33, 45.83% id in 192 aa
YP_050329.1	Similar to Pseudomonas putida conserved hypothetical protein pp2987 SWALL:AAN68595 (EMBL:AE016785) (187 aa) fasta scores: E(): 2.1e-33, 70.24% id in 121 aa, and to Rhizobium loti hypothetical protein Mll2592 SWALL:Q98I32 (EMBL:AP003000) (182 aa) fasta scores: E(): 6.4e-17, 49.56% id in 115 aa
YP_050330.1	Similar to the C-terminal regions of several including Agrobacterium tumefaciens short-chain dehydrogenase atu5444 or agr_pat_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 7.5e-08, 50% id in 60 aa, and to Pseudomonas sp.  short chain dehydrogenase orf65 SWALL:Q936Z5 (EMBL:U66917) (147 aa) fasta scores: E(): 3.2e-07, 50% id in 60 aa
YP_050331.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2120 SWALL:Q9I1Z5 (EMBL:AE004639) (142 aa) fasta scores: E(): 7.7e-15, 43.41% id in 129 aa, and to Ralstonia solanacearum hypothetical protein rsp0317 or rs05451 SWALL:Q8XT00 (EMBL:AL646078) (147 aa) fasta scores: E(): 6.5e-12, 36.5% id in 126 aa
YP_050332.1	Similar to Escherichia coli protein FlxA or b1566 SWALL:FLXA_ECOLI (SWALL:P77609) (110 aa) fasta scores: E(): 0.0012, 34.74% id in 118 aa, and to Shigella flexneri orf, conserved hypothetical protein sf2463 SWALL:AAN43970 (EMBL:AE015262) (113 aa) fasta scores: E(): 3.1e-06, 43.39% id in 106 aa
YP_050333.1	Similar to Rhizobium loti hypothetical protein Msl2237 SWALL:Q98IV1 (EMBL:AP002999) (74 aa) fasta scores: E(): 2.4e-18, 67.64% id in 68 aa
YP_050334.1	Similar to Erwinia pyrifoliae conserved hypothetical protein SWALL:AAN04552 (EMBL:AY123045) (94 aa) fasta scores: E(): 2.6e-22, 66.31% id in 95 aa, and to Yersinia pestis hypothetical protein ypo1157 or y3025 SWALL:Q8ZGW6 (EMBL:AJ414146) (81 aa) fasta scores: E(): 2.7e-16, 63.51% id in 74 aa
YP_050335.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein yddw precursor yddw or b1491 or z2217 or ecs2096 or sf1736 SWALL:YDDW_ECOLI (SWALL:P76130) (439 aa) fasta scores: E(): 1.2e-134, 77.33% id in 428 aa, and to Yersinia pestis lipoprotein ypo2538 or y1649 SWALL:Q8ZDM4 (EMBL:AJ414152) (427 aa) fasta scores: E(): 6.7e-102, 61.03% id in 426 aa
YP_050336.1	Similar to Yersinia pestis hypothetical protein y5172 or y1074 or ypmt1.69 SWALL:Q9ZGZ3 (EMBL:AF074611) (108 aa) fasta scores: E(): 1.5e-24, 61.9% id in 105 aa, and to Salmonella typhimurium  inner membrane protein stm2507 SWALL:Q8ZN63 (EMBL:AE008813) (78 aa) fasta scores: E(): 3e-09, 60.31% id in 63 aa
YP_050337.1	Similar to Yersinia pestis hypothetical protein Ypmt1.68A ypmt1.68A SWALL:Q9RIC5 (EMBL:AL117211) (75 aa) fasta scores: E(): 4e-22, 84% id in 75 aa, and to Xanthomonas axonopodis hypothetical protein Xac0080 SWALL:Q8PR83 (EMBL:AE011631) (85 aa) fasta scores: E(): 0.0015, 38.46% id in 78 aa
YP_050338.1	catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde
YP_050339.1	Similar to Acinetobacter baumannii L-2,4-diaminobutyrate decarboxylase Ddc SWALL:DDC_ACIBA (SWALL:Q43908) (510 aa) fasta scores: E(): 3.1e-101, 54.06% id in 492 aa, and to Enterobacter aerogenes L-2,4-diaminobutyrate decarboxylase Ddc SWALL:Q9S0P8 (EMBL:AB032468) (490 aa) fasta scores: E(): 2.4e-161, 83.77% id in 487 aa
YP_050340.1	4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown
YP_050341.1	Similar to Escherichia coli O157:H7 hypothetical protein z0443 or ecs0400 SWALL:Q8X682 (EMBL:AE005214) (262 aa) fasta scores: E(): 7.5e-55, 53.1% id in 258 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62260 (EMBL:AF440524) (256 aa) fasta scores: E(): 3e-53, 54.51% id in 255 aa
YP_050342.1	Similar to Escherichia coli O157:H7  AraC-like transcriptional regulator z0442 or ecs0399 SWALL:Q8X683 (EMBL:AE005214) (317 aa) fasta scores: E(): 1.5e-74, 57.64% id in 314 aa, and to Pseudomonas aeruginosa transcriptional regulator SWALL:AAN62262 (EMBL:AF440524) (332 aa) fasta scores: E(): 7.5e-68, 55.01% id in 309 aa
YP_050343.1	catalyzes the hydrolysis of mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate
YP_050344.1	Similar to Halobacterium sp. Vng0271C SWALL:Q9HSE4 (EMBL:AE004989) (364 aa) fasta scores: E(): 4.4e-26, 33.24% id in 364 aa
YP_050345.1	Similar to Xanthomonas campestris histidinol-phosphate aminotransferase hisc or xcc3275 SWALL:Q8P5R1 (EMBL:AE012444) (399 aa) fasta scores: E(): 2.9e-27, 31.33% id in 367 aa, and to Pseudomonas fluorescens  aminotransferase qbsB SWALL:AAL65284 (EMBL:AY072690) (363 aa) fasta scores: E(): 1.1e-26, 32.2% id in 354 aa
YP_050347.1	NADP(+)-dependent; catalyzes the formation of 2-aminomalonate-semialdehyde from L-serine; can also use 3-hydroxybutyrate, 3-hydroxy-isobutyrate, D-threonine, L-allo-threonine,D-serine
YP_050348.1	Similar to Yersinia pseudotuberculosis hypothetical 14.2 kDa protein orf9 SWALL:Q93AP0 (EMBL:AF418982) (124 aa) fasta scores: E(): 8.4e-19, 45.52% id in 123 aa, and to Salmonella typhimurium, and Salmonella typhi periplasmic protein ynfb or stm1503 or sty1560 SWALL:Q8XEU2 (EMBL:AE008765) (113 aa) fasta scores: E(): 3.1e-18, 52.52% id in 99 aa
YP_050350.1	Similar to Escherichia coli O157:H7 orf, hypothetical protein z2573 or ecs2292 SWALL:Q8X798 (EMBL:AE005382) (102 aa) fasta scores: E(): 1.2e-14, 55.44% id in 101 aa, and to Salmonella typhimurium  outer membrane protein ynfd or stm1500 SWALL:Q8ZPJ5 (EMBL:AE008765) (102 aa) fasta scores: E(): 5.2e-14, 56.98% id in 93 aa
YP_050351.1	Similar to Listeria monocytogenes hypothetical protein Lmo0981 SWALL:Q8Y8C7 (EMBL:AL591977) (491 aa) fasta scores: E(): 1.8e-54, 36.23% id in 483 aa, and to Clostridium acetobutylicum permease, mdr related cap0131 SWALL:Q97TH0 (EMBL:AE001438) (489 aa) fasta scores: E(): 2.2e-51, 34.31% id in 475 aa
YP_050352.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_050353.1	Similar to Escherichia coli Mlc protein Mlc or b1594 SWALL:MLC_ECOLI (SWALL:P50456) (406 aa) fasta scores: E(): 1.3e-113, 71.92% id in 406 aa, and to Yersinia pestis  rok family transcriptional regulatory protein mlc or ypo2268 SWALL:Q8ZEB4 (EMBL:AJ414151) (405 aa) fasta scores: E(): 7.4e-131, 81.72% id in 405 aa
YP_050354.1	Similar to Salmonella typhi  regulatory protein sty1578 SWALL:Q8Z6X7 (EMBL:AL627270) (299 aa) fasta scores: E(): 3.5e-66, 60.81% id in 296 aa, and to Yersinia pestis  transcriptional regulator LysR-type y2109 SWALL:AAM85672 (EMBL:AE013813) (307 aa) fasta scores: E(): 1e-72, 69.61% id in 283 aa
YP_050355.1	Similar to Escherichia coli hypothetical transport protein ynfm or b1596 SWALL:YNFM_ECOLI (SWALL:P43531) (417 aa) fasta scores: E(): 3.4e-109, 71.29% id in 411 aa, and to Salmonella typhimurium, and Salmonella typhi  mfs familty transport protein ynfm or stm1486 or sty1579 SWALL:Q8XH12 (EMBL:AE008764) (417 aa) fasta scores: E(): 2.3e-108, 72.23% id in 407 aa
YP_050356.1	binds to DNA replication terminator sequences to prevent passage of replication forks
YP_050357.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_050358.1	Similar to Escherichia coli mannose-6-phosphate isomerase ManA or Pmi or b1613 SWALL:MANA_ECOLI (SWALL:P00946) (391 aa) fasta scores: E(): 1e-110, 71.28% id in 390 aa
YP_050359.1	Similar to Escherichia coli O6 hypothetical protein ydga or c2006 SWALL:AAN80466 (EMBL:AE016761) (502 aa) fasta scores: E(): 3.5e-65, 38.67% id in 512 aa, and to Shigella flexneri orf, conserved hypothetical protein ydga or sf1637 SWALL:AAN43220 (EMBL:AE015185) (502 aa) fasta scores: E(): 3.5e-65, 38.67% id in 512 aa
YP_050360.1	Similar to Pseudomonas resinovorans efflux pump SWALL:BAC41699 (EMBL:AB088420) (319 aa) fasta scores: E(): 4.4e-44, 44.08% id in 313 aa, and to Pseudomonas putida transporter, bile acid/na+ symporter family pp0670 SWALL:AAN66295 (EMBL:AE016776) (317 aa) fasta scores: E(): 6.3e-48, 46.45% id in 310 aa
YP_050361.1	catalyzes the formation of inosine from adenosine
YP_050362.1	Similar to Brucella suis conserved hypothetical protein br1163 SWALL:AAN30083 (EMBL:AE014417) (164 aa) fasta scores: E(): 2.7e-30, 58.06% id in 155 aa, and to Ralstonia solanacearum hypothetical signal peptide protein rsp1443 or rs03100 SWALL:Q8XQ43 (EMBL:AL646084) (158 aa) fasta scores: E(): 6.4e-26, 56.81% id in 132 aa
YP_050363.1	Similar to Yersinia pestis  membrane protein ypo2260 or y2102 SWALL:Q8ZEC0 (EMBL:AJ414151) (342 aa) fasta scores: E(): 2e-105, 85.84% id in 325 aa, and to Escherichia coli hypothetical protein yfeh or b2410 SWALL:YFEH_ECOLI (SWALL:P39836) (332 aa) fasta scores: E(): 9.4e-79, 66.97% id in 324 aa
YP_050364.2	Similar to Shigella flexneri orf, conserved hypothetical protein ydgj or sf1649 SWALL:AAN43231 (EMBL:AE015186) (359 aa) fasta scores: E(): 2.1e-97, 70.57% id in 350 aa, and to Escherichia coli hypothetical oxidoreductase ydgj or b1624 SWALL:YDGJ_ECOLI (SWALL:P77376) (346 aa) fasta scores: E(): 1.5e-96, 71.01% id in 345 aa
YP_050365.1	positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose
YP_050366.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_050367.1	Part of the ABC transporter complex AraFGH involved in the high affinity transport of arabinose
YP_050368.1	Similar to Escherichia coli L-arabinose-binding periplasmic protein precursor AraF or b1901 SWALL:ARAF_ECOLI (SWALL:P02924) (329 aa) fasta scores: E(): 1.4e-107, 89.87% id in 326 aa
YP_050369.1	catalyzes the phosphorylation of ribulose to ribulose 5-phosphate
YP_050370.1	catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism
YP_050371.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 electron transport complex protein RnfA or b1627 or c2019 or z2633 or ecs2336 SWALL:RNFA_ECOLI (SWALL:P76181) (193 aa) fasta scores: E(): 1.3e-58, 80.31% id in 193 aa, and to Yersinia pestis electron transport complex protein RnfA or ypo2246 or y2087 SWALL:RNFA_YERPE (SWALL:Q8ZEC8) (193 aa) fasta scores: E(): 4.1e-60, 81.86% id in 193 aa
YP_050372.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_050373.1	part of membrane-bound complex thought to be involved in electron transport to nitrogen
YP_050374.1	RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents
YP_050375.1	part of membrane-bound complex hought to be involved in electron transport to nitrogen
YP_050376.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_050377.1	DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines
YP_050378.1	mutations in this gene confer resistance to the toxic peptide alafosfalin in Salmonella typhimurium; member of proton-dependent oligopeptide transport (POT) system family; in Escherichia coli this gene is regulated by OmpR although not via osmoregulation
YP_050379.1	LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation
YP_050381.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_050382.1	Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO69255 (EMBL:AE016839) (83 aa) fasta scores: E(): 3.7e-19, 66.26% id in 83 aa, and to Yersinia pestis hypothetical protein ypo2217 ypo2217 or y2058 SWALL:Q8ZEF6 (EMBL:AJ414151) (83 aa) fasta scores: E(): 5e-19, 71.42% id in 77 aa
YP_050383.2	SohB; periplasmic protein; member of the peptidase S49 family
YP_050384.1	Similar to Yersinia pestis  short chain dehydrogenase ypo2215 SWALL:Q8ZEF8 (EMBL:AJ414151) (253 aa) fasta scores: E(): 4.9e-73, 75.49% id in 253 aa, and to Salmonella typhimurium, and Salmonella typhi  oxoacyl- ycik or stm1717 or sty1333 SWALL:Q8XGU5 (EMBL:AE008776) (253 aa) fasta scores: E(): 1.2e-71, 74.3% id in 253 aa
YP_050385.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_050386.1	catalyzes the synthesis of pseudouridine from uracil-2605 in 23S ribosomal RNA
YP_050387.1	Similar to Yersinia pestis hypothetical protein ypo2212 or y2053 SWALL:Q8ZEG1 (EMBL:AJ414151) (206 aa) fasta scores: E(): 8.9e-67, 85.36% id in 205 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO69260 (EMBL:AE016839) (206 aa) fasta scores: E(): 4.7e-61, 77.67% id in 206 aa
YP_050388.1	Similar to Salmonella typhimurium protein TrpH or stm1721 SWALL:TRPH_SALTY (SWALL:O54453) (293 aa) fasta scores: E(): 1.3e-72, 68.75% id in 272 aa, and to Escherichia coli protein TrpH or b1266 SWALL:TRPH_ECOLI (SWALL:P77766) (293 aa) fasta scores: E(): 6.4e-73, 68.75% id in 272 aa
YP_050389.1	Similar to Pseudomonas putida beta-(1-3)-glucosyl transferase,  pp1526 SWALL:AAN67147 (EMBL:AE016779) (863 aa) fasta scores: E(): 2.2e-39, 32.08% id in 455 aa, and to Synechococcus elongatus cellulose synthase tll0007 SWALL:BAC07560 (EMBL:AP005369) (736 aa) fasta scores: E(): 2.9e-18, 26.26% id in 552 aa
YP_050390.1	Similar to Pseudomonas sp. 61-3 PhbR SWALL:Q9Z3Y6 (EMBL:AB014757) (379 aa) fasta scores: E(): 2.4e-41, 35.01% id in 337 aa, and to Azotobacter sp. FA8 PhaR protein PhaR SWALL:Q8KRE8 (EMBL:AJ496234) (369 aa) fasta scores: E(): 7.9e-33, 31.36% id in 338 aa
YP_050391.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_050392.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_050393.2	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_050394.1	monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate
YP_050395.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_050396.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_050397.1	Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor kdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 9.9e-56, 58.84% id in 243 aa. Also similar to ECA2407 (KdgM) (59.259% id).
YP_050398.1	receptor for colicin S4
YP_050399.1	Similar to Amsacta moorei entomopoxvirus Amv188 amv188 SWALL:Q9EML7 (EMBL:AF250284) (60 aa) fasta scores: E(): 1.4, 43.9% id in 41 aa
YP_050400.1	Similar to Yersinia pestis  membrane protein ypo2199 or y2042 SWALL:Q8ZEH4 (EMBL:AJ414151) (256 aa) fasta scores: E(): 8.8e-50, 55.42% id in 249 aa, and to Salmonella typhimurium  inner membrane protein ycic or stm1734 SWALL:Q8ZP49 (EMBL:AE008777) (247 aa) fasta scores: E(): 9.6e-49, 55.82% id in 249 aa
YP_050401.1	Similar to Shigella flexneri orf, hypothetical protein sf1608 SWALL:AAN43192 (EMBL:AE015182) (345 aa) fasta scores: E(): 1.1e-57, 55.21% id in 326 aa, and to Salmonella typhi possible integrase sty3193 SWALL:Q8Z3Y1 (EMBL:AL627277) (548 aa) fasta scores: E(): 2.6e-09, 30.68% id in 528 aa
YP_050402.1	Similar to an internal region of Bacteriophage T7 protein kinase 0.7 SWALL:KIPA_BPT7 (SWALL:) (359 aa) fasta scores: E(): 0.08, 34% id in 100 aa
YP_050403.1	Similar to Culex nigripalpus baculovirus Cun001 bro protein, atp_gtp_a motif, similar to acmnpv orf 2 cun001 SWALL:Q919R4 (EMBL:AF403738) (593 aa) fasta scores: E(): 0.047, 23.98% id in 246 aa, and to Spodoptera frugiperda ascovirus 1 av1-bro-l10 protein SWALL:Q8JJX7 (EMBL:AJ312699) (268 aa) fasta scores: E(): 0.092, 23.92% id in 209 aa
YP_050404.1	Similar to Bacteriophage HK620 DNA-binding protein RoI roI SWALL:Q9AZ12 (EMBL:AF335538) (240 aa) fasta scores: E(): 4, 24.53% id in 216 aa, and to Shigella flexneri orf, partial conserved hypothetical protein sf2861 SWALL:AAN44347 (EMBL:AE015300) (248 aa) fasta scores: E(): 2.1e-49, 58.92% id in 241 aa
YP_050406.1	Similar to Vibrio cholerae orf28 SWALL:Q9L984 (EMBL:AF179596) (135 aa) fasta scores: E(): 1.6, 30.39% id in 102 aa, and to Salmonella typhi hypothetical protein Sty3189 sty3189 SWALL:Q8Z3Y4 (EMBL:AL627277) (163 aa) fasta scores: E(): 1.2, 25.58% id in 129 aa
YP_050407.1	Weakly similar to Shigella flexneri orf, conserved hypothetical protein sf2859 SWALL:AAN44345 (EMBL:AE015300) (329 aa) fasta scores: E(): 9.8e-18, 30.19% id in 308 aa, and to Salmonella typhi hypothetical protein Sty3188 sty3188 SWALL:Q8Z3Y5 (EMBL:AL627277) (327 aa) fasta scores: E(): 5.9e-08, 30.19% id in 308 aa
YP_050408.1	Involved in cell division; probably involved in intracellular septation
YP_050409.1	YciA; hydrolase that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA and malonyl-CoA; member of the the acyl coenzyme A hydrolase family of proteins
YP_050410.1	membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins
YP_050411.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein ycii or b1251 or c1716 or sf1254 SWALL:YCII_ECOLI (SWALL:P31070) (98 aa) fasta scores: E(): 7.2e-27, 75.51% id in 98 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein ycii or stm1738 or sty1313 SWALL:Q8XH04 (EMBL:AE008777) (98 aa) fasta scores: E(): 4.4e-26, 72.44% id in 98 aa
YP_050412.1	Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2.1e-47, 31.81% id in 528 aa, and to Yersinia pestis  methyl-accepting chemotaxis protein y3190 SWALL:AAM86740 (EMBL:AE013920) (566 aa) fasta scores: E(): 8e-81, 47.86% id in 516 aa
YP_050413.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_050414.1	highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein
YP_050415.1	Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF or stm1742 SWALL:OPPF_SALTY (SWALL:P08007) (334 aa) fasta scores: E(): 1.9e-108, 85.88% id in 333 aa
YP_050416.1	Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or stm1743 SWALL:OPPD_SALTY (SWALL:P04285) (335 aa) fasta scores: E(): 3.4e-102, 86.29% id in 321 aa
YP_050417.1	Similar to Salmonella typhimurium oligopeptide transport system permease protein OppC or stm1744 SWALL:OPPC_SALTY (SWALL:P08006) (302 aa) fasta scores: E(): 8.6e-101, 86.09% id in 302 aa
YP_050418.1	Similar to Salmonella typhimurium oligopeptide transport system permease protein OppB or stm1745 SWALL:OPPB_SALTY (SWALL:P08005) (306 aa) fasta scores: E(): 2e-103, 90.52% id in 306 aa
YP_050419.1	Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA or stm1746 SWALL:OPPA_SALTY (SWALL:P06202) (543 aa) fasta scores: E(): 3.2e-174, 76.33% id in 545 aa. Also highly similar to ECA2325 80.784% id
YP_050420.1	Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA or stm1746 SWALL:OPPA_SALTY (SWALL:P06202) (543 aa) fasta scores: E(): 4.8e-173, 76.44% id in 535 aa. Also highly similar to ECA2324 80.784% id
YP_050421.1	Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa
YP_050422.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_050423.1	Similar to Erwinia chrysanthemi Hns regulatory protein Hns SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 1.2e-39, 91.11% id in 135 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA-binding protein H-NS SWALL:HNS_ECOLI (SWALL:P08936) (136 aa) fasta scores: E(): 8.1e-36, 84.32% id in 134 aa. Also similar to ECA2893 (62.406% id in 133 aa overlap) and to ECA1665 (61.654% id in 133 aa overlap)
YP_050424.1	together with GalF subunit composes the UTP--glucose-1-phosphate uridylyltransferase, an enzyme that catalyzes the formation of UDP-glucose from UTP and alpha-D-glucose 1-phosphate; regulates cellular levels of UDP-glucose
YP_050425.1	Similar to Pectobacterium carotovorum subsp. carotovorum ExpM protein ExpM SWALL:O86197 (EMBL:AJ224437) (338 aa) fasta scores: E(): 1.4e-123, 95.26% id in 338 aa, and to Erwinia chrysanthemi RssB protein RssB SWALL:Q93KA6 (EMBL:AJ410309) (338 aa) fasta scores: E(): 1.1e-97, 75.73% id in 338 aa
YP_050426.1	Similar to Pectobacterium carotovorum subsp. carotovorum ExpL protein ExpL SWALL:O86196 (EMBL:AJ224437) (303 aa) fasta scores: E(): 1.2e-110, 93.37% id in 302 aa, and to Erwinia chrysanthemi RssA protein RssA SWALL:Q93KA7 (EMBL:AJ410309) (304 aa) fasta scores: E(): 3.1e-84, 72.91% id in 299 aa
YP_050427.1	Similar to Yersinia pestis hypothetical protein ypo2172/y2149 ypo2172 or y2149 SWALL:AAM85711 (EMBL:AJ414151) (154 aa) fasta scores: E(): 2.7e-36, 56.77% id in 155 aa, and to Shigella flexneri hypothetical protein ychj ychj or sf1233 SWALL:YCHJ_SHIFL (SWALL:P38481) (152 aa) fasta scores: E(): 6.2e-29, 47.74% id in 155 aa
YP_050428.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_050429.1	Similar to Pasteurella multocida hypothetical protein Pm0935 SWALL:Q9CM99 (EMBL:AE006133) (226 aa) fasta scores: E(): 6.7e-43, 53.2% id in 203 aa, and to Pseudomonas putida conserved hypothetical protein pp4901 SWALL:AAN70468 (EMBL:AE016792) (203 aa) fasta scores: E(): 2.2e-41, 55.77% id in 199 aa
YP_050430.1	removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction
YP_050431.1	Similar to Yersinia pestis  exported protein ypo2166 or y2155 SWALL:Q8ZEJ9 (EMBL:AJ414151) (96 aa) fasta scores: E(): 5.7e-17, 48.91% id in 92 aa, and to Salmonella typhi  exported protein sty1814 SWALL:Q8Z6F7 (EMBL:AL627271) (91 aa) fasta scores: E(): 2e-14, 50% id in 86 aa
YP_050432.1	decatenates replicating daughter chromosomes
YP_050433.1	Similar to Yersinia pestis  nitroreductase ypo2163 or y2159 SWALL:Q8ZEK2 (EMBL:AJ414151) (183 aa) fasta scores: E(): 1.3e-57, 73.22% id in 183 aa, and to Salmonella typhimurium, and Salmonella typhi oxidoreductase ydja or stm1296 or sty1818 SWALL:Q8XGY1 (EMBL:AE008756) (183 aa) fasta scores: E(): 4.3e-52, 69.39% id in 183 aa
YP_050434.1	SppA; catalyzes the degradation of cleaved signal peptides; essential to maintain secretion of mature proteins across the membrane
YP_050435.1	converts asparagine to aspartate and ammonia
YP_050436.1	catalyzes the formation of nicotinate from nicotinamide in NAD biosynthesis and the formation of pyrazinoate from pyrazinamide
YP_050437.1	Similar to Yersinia pestis hypothetical protein Ypo2159 SWALL:Q8ZEK6 (EMBL:AJ414151) (90 aa) fasta scores: E(): 1.4e-26, 78.88% id in 90 aa, and to Escherichia coli hypothetical protein yeac or b1777 SWALL:YEAC_ECOLI (SWALL:P76231) (90 aa) fasta scores: E(): 1.1e-22, 67.04% id in 88 aa
YP_050438.1	this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress
YP_050439.1	catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
YP_050440.1	Similar to Salmonella typhimurium  enzymes related to aldose 1-epimerase yead or stm1289 SWALL:Q8ZPV9 (EMBL:AE008756) (294 aa) fasta scores: E(): 2.7e-73, 58.7% id in 293 aa, and to Yersinia pestis hypothetical protein ypo2156 or y2166 SWALL:Q8ZEK9 (EMBL:AJ414151) (291 aa) fasta scores: E(): 7.4e-83, 64.01% id in 289 aa
YP_050441.1	Similar to Salmonella typhi  oxidoreductase sty1828 SWALL:Q8Z6F0 (EMBL:AL627271) (285 aa) fasta scores: E(): 1.1e-72, 63.7% id in 281 aa, and to Escherichia coli hypothetical protein yeae yeae or b1781 SWALL:YEAE_ECOLI (SWALL:P76234) (284 aa) fasta scores: E(): 4.1e-72, 63.7% id in 281 aa
YP_050442.1	Similar to Escherichia coli, and Shigella flexneri MltA-interacting protein precursor MipA or b1782 or sf1441 SWALL:MIPA_ECOLI (SWALL:P77486) (248 aa) fasta scores: E(): 7.7e-51, 52.61% id in 249 aa
YP_050443.1	Similar to Salmonella typhimurium  ser protein kinase yeag or stm1285 SWALL:Q8ZPW2 (EMBL:AE008755) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeag or b1783 or c2188 or z2823 or ecs2492 SWALL:YEAG_ECOLI (SWALL:P77391) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa
YP_050444.1	Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein t1163 SWALL:AAO68822 (EMBL:AE016838) (428 aa) fasta scores: E(): 2.7e-140, 86.85% id in 426 aa, and to Escherichia coli hypothetical protein yeah or b1784 SWALL:YEAH_ECOLI (SWALL:P76235) (427 aa) fasta scores: E(): 3.6e-139, 87.41% id in 421 aa
YP_050445.1	Similar to Yersinia pestis  multidrug resistance protein ypo2148 or y2173 SWALL:Q8ZEL6 (EMBL:AJ414151) (400 aa) fasta scores: E(): 3.6e-100, 68.58% id in 382 aa, and to Shewanella oneidensis drug resistance transporter, bcr/cfla family protein so4555 SWALL:AAN57516 (EMBL:AE015887) (402 aa) fasta scores: E(): 1.4e-52, 42.3% id in 390 aa
YP_050446.1	catalyzes the oxidative deamination of D-amino acids
YP_050447.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri 6-phosphofructokinase isozyme I PfkA or b3916 or z5460 or ecs4841 or sf3994 SWALL:K6P1_ECOLI (SWALL:P06998) (320 aa) fasta scores: E(): 1.9e-17, 30.79% id in 315 aa. Also similar to ECA4307 (isozyme I, PfkA) (30.323% id.in 310 aa overlap)
YP_050448.1	Similar to Listeria monocytogenes hypothetical protein Lmo2650 SWALL:Q8Y425 (EMBL:AL591984) (90 aa) fasta scores: E(): 5e-08, 35.1% id in 94 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein stm2343 or sty2573 SWALL:Q8XG32 (EMBL:AE008805) (90 aa) fasta scores: E(): 7.8e-08, 42.85% id in 91 aa
YP_050449.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_050451.1	Similar to Escherichia coli, and Escherichia coli O157:H7 unknown pentitol phosphotransferase enzyme ii, a component sgaa or b4195 or z5804 or ecs5171 SWALL:PTXA_ECOLI (SWALL:P39303) (154 aa) fasta scores: E(): 2.3e-15, 34.01% id in 147 aa, and to Salmonella typhimurium  PTS enzyme iisga subunit ptxa or stm4385 SWALL:Q8ZK88 (EMBL:AE008905) (154 aa) fasta scores: E(): 9e-16, 34.69% id in 147 aa
YP_050452.1	Similar to Brucella suis shikimate kinase Arok or br2029 SWALL:Q8FY59 (EMBL:AE014491) (200 aa) fasta scores: E(): 2.3, 20.78% id in 178 aa, and to the C-terminal region of Rhizobium loti glucokinase mlr3412 SWALL:Q98GB0 (EMBL:AP003001) (482 aa) fasta scores: E(): 1.5e-27, 45.71% id in 175 aa
YP_050453.1	Similar to Rhizobium loti tagatose-1,6-bisphosphate aldolase mlr3411 SWALL:Q98GB1 (EMBL:AP003001) (302 aa) fasta scores: E(): 2.3e-75, 62.75% id in 298 aa, and to Streptococcus mutans tagatose 1,6-diphosphate aldolase LacD or smu.1493 SWALL:LACD_STRMU (SWALL:P26425) (325 aa) fasta scores: E(): 4.2e-06, 23.19% id in 319 aa
YP_050454.1	Similar to Salmonella typhimurium  cytoplasmic protein ycgb or stm1804 SWALL:Q8ZP16 (EMBL:AE008780) (510 aa) fasta scores: E(): 1.3e-185, 85.6% id in 507 aa, and to Escherichia coli hypothetical protein ycgb or b1188 SWALL:YCGB_ECOLI (SWALL:P29013) (510 aa) fasta scores: E(): 4.9e-185, 84.98% id in 506 aa
YP_050455.1	Multifunctional regulator of fatty acid metabolism
YP_050456.1	involved in regulation of intracellular pH under alkaline conditions
YP_050457.1	disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein
YP_050458.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA polymerase III, theta subunit HolE or b1842 or c2252 or z2891 or ecs2552 or sf1852.1 SWALL:HOLE_ECOLI (SWALL:P28689) (76 aa) fasta scores: E(): 3.5, 32.65% id in 49 aa, and to Yersinia pestis hypothetical protein ypo2590 ypo2590 or y1160 SWALL:Q8ZDH8 (EMBL:AJ414153) (64 aa) fasta scores: E(): 5e-09, 50.79% id in 63 aa
YP_050460.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein ycgn or b1181 or sf1170 SWALL:AAN42786 (EMBL:AE000216) (153 aa) fasta scores: E(): 6.8e-54, 79.73% id in 148 aa, and to Yersinia pestis hypothetical protein ypo2083 or y2228 SWALL:AAM85788 (EMBL:AJ414151) (148 aa) fasta scores: E(): 7.8e-54, 80.4% id in 148 aa
YP_050461.1	Similar to Yersinia pestis  fumarylacetoacetate hydrolase family protein ypo2082 SWALL:Q8ZES1 (EMBL:AJ414151) (218 aa) fasta scores: E(): 5.9e-73, 82.56% id in 218 aa, and to Salmonella typhimurium, and Salmonella typhi  fumarylacetoacetate ycgm or stm1812 or sty1942 SWALL:Q8XF52 (EMBL:AE008780) (219 aa) fasta scores: E(): 3.8e-66, 75.34% id in 219 aa
YP_050462.1	Similar to Shigella flexneri orf, conserved hypothetical protein ycgl or sf1168 SWALL:AAN42784 (EMBL:AE015143) (108 aa) fasta scores: E(): 1.3e-25, 83.52% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein ycgl or b1179 or c1627 or z1941 or ecs1674 SWALL:YCGL_ECOLI (SWALL:P76003) (108 aa) fasta scores: E(): 4e-25, 82.35% id in 85 aa
YP_050463.1	blocks the formation of polar Z-ring septums
YP_050464.1	ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums
YP_050465.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_050466.1	Similar to Escherichia coli ribonuclease D Rnd or b1804 SWALL:RND_ECOLI (SWALL:P09155) (375 aa) fasta scores: E(): 2.7e-102, 65.24% id in 374 aa
YP_050467.1	Activates fatty acids by binding to coenzyme A
YP_050468.1	Similar to Escherichia coli, and Escherichia coli O6 hypothetical lipoprotein yeay precursor yeay or b1806 or c2210 SWALL:YEAY_ECOLI (SWALL:P76255) (193 aa) fasta scores: E(): 3.6e-38, 57.36% id in 197 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 lipoprotein t1058 SWALL:AAO68724 (EMBL:AE016837) (193 aa) fasta scores: E(): 8.2e-38, 57.36% id in 197 aa
YP_050469.1	Similar to Yersinia pestis hypothetical protein Ypo2072 SWALL:Q8ZET1 (EMBL:AJ414151) (232 aa) fasta scores: E(): 1.3e-62, 72.84% id in 232 aa, and to Escherichia coli hypothetical protease yeaz yeaz or b1807 SWALL:YEAZ_ECOLI (SWALL:P76256) (231 aa) fasta scores: E(): 2.8e-59, 69.13% id in 230 aa
YP_050470.1	Similar to Yersinia pestis  dead box family helicase ypo2071 or y2239 SWALL:Q8ZET2 (EMBL:AJ414151) (634 aa) fasta scores: E(): 2.8e-217, 84.12% id in 630 aa, and to Escherichia coli O6 probable ATP-dependent helicase yoaa c2212 SWALL:AAN80671 (EMBL:AE016761) (636 aa) fasta scores: E(): 1.2e-208, 80.57% id in 628 aa
YP_050471.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yoab or b1809 or c2213 or sf1419 SWALL:YOAB_ECOLI (SWALL:P76258) (114 aa) fasta scores: E(): 6.4e-31, 73.68% id in 114 aa, and to Yersinia pestis hypothetical protein ypo2070 or y2240 SWALL:Q8ZET3 (EMBL:AJ414151) (114 aa) fasta scores: E(): 1.4e-30, 71.93% id in 114 aa
YP_050472.1	Similar to Yersinia pestis hypothetical protein ypo1774 or y2534 SWALL:YH74_YERPE (SWALL:Q8ZFE0) (85 aa) fasta scores: E(): 1.1e-10, 53.84% id in 78 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yoah or b1811 or c2216 or z2854 or ecs2520 SWALL:YOAH_ECOLI (SWALL:P76260) (59 aa) fasta scores: E(): 1.7e-10, 67.24% id in 58 aa
YP_050473.1	catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine
YP_050474.1	Similar to Escherichia coli hypothetical upf0035 protein yeab or b1813 SWALL:YEAB_ECOLI (SWALL:P43337) (192 aa) fasta scores: E(): 3.4e-41, 60.41% id in 192 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical upf0035 protein yeab or stm1825 or sty1955 SWALL:YEAB_SALTY (SWALL:P43339) (192 aa) fasta scores: E(): 8e-41, 58.33% id in 192 aa
YP_050475.1	Similar to Escherichia coli L-serine dehydratase 1 SdaA or b1814 SWALL:SDHL_ECOLI (SWALL:P16095) (454 aa) fasta scores: E(): 5.1e-154, 83.92% id in 454 aa. Also similar to ECA3159 (SdaB) (75.165% id. in 455 aa overlap)
YP_050476.1	Similar to Vibrio vulnificus transcriptional regulator vv21654 SWALL:AAO08512 (EMBL:AE016813) (307 aa) fasta scores: E(): 3.6e-40, 39.79% id in 299 aa, and to Xanthomonas campestris transcriptional regulator xcc3667 SWALL:Q8P4P0 (EMBL:AE012487) (311 aa) fasta scores: E(): 7.8e-40, 41.27% id in 298 aa
YP_050477.1	Similar to Ralstonia solanacearum  transmemembrane reductase oxidoreductase protein rsp1147 or rs05455 SWALL:Q8XQS2 (EMBL:AL646083) (208 aa) fasta scores: E(): 4.5e-24, 43.81% id in 210 aa, and to Streptomyces coelicolor  reductase sco0967 or scm11.22C SWALL:Q9RIU0 (EMBL:AL939107) (207 aa) fasta scores: E(): 5.2e-16, 39.89% id in 188 aa
YP_050478.1	Similar to Pseudomonas aeruginosa probable hydrolase pa1202 SWALL:Q9I4D6 (EMBL:AE004550) (205 aa) fasta scores: E(): 3.9e-25, 41.17% id in 204 aa, and to Pseudomonas syringae isochorismatase family protein pspto1009 SWALL:AAO54542 (EMBL:AE016859) (208 aa) fasta scores: E(): 5.3e-24, 38.91% id in 203 aa
YP_050479.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yoae or b1816 or c2222 or z2859 or ecs2525 SWALL:YOAE_ECOLI (SWALL:P76262) (518 aa) fasta scores: E(): 1.6e-140, 72.64% id in 519 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2  membrane protein t1049 SWALL:AAO68715 (EMBL:AE016837) (519 aa) fasta scores: E(): 2.8e-137, 70.9% id in 519 aa
YP_050480.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific iiab component ManX or PtsL or GptB or b1817 or c2223 or z2860 or ecs2527 or sf1411 SWALL:PTNA_ECOLI (SWALL:P08186) (322 aa) fasta scores: E(): 5.5e-80, 74.84% id in 322 aa
YP_050481.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, mannose-specific IIc component ManY or PtsP or Pel or b1818 or c2224 or z2861 or ecs2528 or sf1410 SWALL:PTNC_ECOLI (SWALL:P08187) (266 aa) fasta scores: E(): 1e-78, 87.21% id in 266 aa
YP_050482.1	hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel
YP_050483.1	Similar to Yersinia pestis  membrane protein ypo1755 or y2554 SWALL:AAM86109 (EMBL:AJ414150) (153 aa) fasta scores: E(): 3e-41, 73.02% id in 152 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yobd or b1820 or c2227 SWALL:YOBD_ECOLI (SWALL:P76263) (152 aa) fasta scores: E(): 8.8e-33, 57.89% id in 152 aa
YP_050484.1	Similar to Yersinia pestis  membrane protein ypo1754 or y2555 SWALL:Q8ZFF8 (EMBL:AJ414150) (189 aa) fasta scores: E(): 1.2e-53, 76.88% id in 186 aa, and to Escherichia coli hypothetical protein yebn or b1821 SWALL:YEBN_ECOLI (SWALL:P76264) (206 aa) fasta scores: E(): 2.3e-49, 67.2% id in 186 aa
YP_050485.1	methylates the guanosine in position 745 of 23S rRNA; required for translation and cell growth
YP_050486.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, and Salmonella typhi cold shock-like protein CspC SWALL:CSPC_ECOLI (SWALL:P36996) (68 aa) fasta scores: E(): 3.2e-25, 97.05% id in 68 aa, and to Yersinia pestis cold shock protein ypo1746 SWALL:Q8ZFG3 (EMBL:AJ414150) (69 aa) fasta scores: E(): 5.2e-26, 98.55% id in 69 aa
YP_050487.1	Similar to Yersinia pestis periplasmic chelated iron-binding protein YfeA precursor yfea or ypo2439 or y1897 SWALL:YFEA_YERPE (SWALL:Q56952) (311 aa) fasta scores: E(): 1.6e-89, 78.85% id in 298 aa
YP_050488.1	Similar to Yersinia pestis chelated iron transport system membrane protein YfeB or ypo2440 or y1896 SWALL:YFEB_YERPE (SWALL:Q56953) (296 aa) fasta scores: E(): 1.6e-83, 80.14% id in 277 aa
YP_050489.1	Similar to Yersinia pestis chelated iron transport system membrane protein YfeC or ypo2441 or y1895 SWALL:YFEC_YERPE (SWALL:Q56954) (294 aa) fasta scores: E(): 2.1e-93, 90.03% id in 281 aa
YP_050490.1	Similar to Yersinia pestis chelated iron transport system membrane protein YfeD or ypo2442 or y1894 SWALL:YFED_YERPE (SWALL:Q56955) (297 aa) fasta scores: E(): 3.6e-84, 76.67% id in 283 aa
YP_050491.1	Similar to Yersinia pestis hypothetical protein ypo2444 ypo2444 or y1892 SWALL:Q8ZDV8 (EMBL:AJ414152) (291 aa) fasta scores: E(): 1.1e-92, 72.53% id in 284 aa, and to Escherichia coli hypothetical protein ynia ynia or b1725 SWALL:YNIA_ECOLI (SWALL:P77739) (286 aa) fasta scores: E(): 1.6e-89, 70.42% id in 284 aa
YP_050492.1	Similar to Yersinia pestis  yfeabcd regulator YfeE or ypo2445 or y1891 SWALL:YFEE_YERPE (SWALL:Q56956) (184 aa) fasta scores: E(): 1.8e-48, 63.73% id in 182 aa, and to Salmonella typhimurium, and Salmonella typhi  regulator ynib or stm1323 or sty1788 SWALL:Q8XFB7 (EMBL:AE008757) (178 aa) fasta scores: E(): 6.8e-47, 63.33% id in 180 aa
YP_050493.1	YniC; catalyzes the dephosphorylation of 2-deoxyglucose 6-phosphate, mannose 6-phosphate and p-nitrophenyl phosphate
YP_050494.1	Similar to Erwinia chrysanthemi pectin degradation protein KdgF SWALL:KDGF_ERWCH (SWALL:Q05527) (110 aa) fasta scores: E(): 3.3e-38, 89.09% id in 110 aa, and to Yersinia pestis  pectin degradation protein KdgF or y1888 SWALL:AAM85455 (EMBL:AE013792) (116 aa) fasta scores: E(): 2.9e-33, 77.98% id in 109 aa
YP_050495.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_050496.1	catalyzes the formation of 3-dehydro-2-deoxy-D-gluconate from 2-deoxy-D-gluconate
YP_050497.1	Similar to Erwinia chrysanthemi pectate disaccharide-lyase PelW or KdgC SWALL:PELW_ERWCH (SWALL:Q05526) (553 aa) fasta scores: E(): 1.8e-175, 73.97% id in 538 aa. Also similar to ECA2135 (PelB) (37.782% id 532 aa overlap)
YP_050498.1	Similar to Erwinia chrysanthemi inner membrane protein TogM SWALL:Q93KC0 (EMBL:AJ305144) (296 aa) fasta scores: E(): 1.2e-115, 97.63% id in 296 aa
YP_050499.1	Similar to Erwinia chrysanthemi inner membrane protein TogN SWALL:Q93KB9 (EMBL:AJ305144) (300 aa) fasta scores: E(): 1.7e-108, 90.03% id in 301 aa
YP_050500.1	Similar to Erwinia chrysanthemi ABC ATPase TogA SWALL:Q93KB8 (EMBL:AJ305144) (375 aa) fasta scores: E(): 8e-119, 85.6% id in 375 aa
YP_050501.1	Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 3.3e-143, 84.84% id in 429 aa, and to Yersinia pestis  sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-137, 80.69% id in 430 aa. Also similar to ECA3551 (56.398% id) and to ECA2210 (50.117% id)
YP_050502.1	Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor kdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 7.1e-64, 67.22% id in 238 aa. Also similar to ECA2302 (59.259% id).
YP_050503.1	Similar to Erwinia chrysanthemi pectin acetylesterase precursor PaeX SWALL:Q83V97 (EMBL:AJ507215) (322 aa) fasta scores: E(): 1.6e-94, 78.06% id in 310 aa, and to Xanthomonas campestris xylanase XynB or xcc0144 SWALL:Q8PE39 (EMBL:AE012110) (329 aa) fasta scores: E(): 3.3e-61, 56.08% id in 296 aa
YP_050504.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein ydjm precursor ydjm or b1728 or sf1502 SWALL:YDJM_ECOLI (SWALL:P76209) (200 aa) fasta scores: E(): 1.1e-50, 62.3% id in 191 aa, and to Yersinia pestis  membrane protein ypo1717 or y1879 SWALL:Q8ZFI6 (EMBL:AJ414150) (182 aa) fasta scores: E(): 1.2e-50, 67.58% id in 182 aa
YP_050505.1	Similar to Yersinia pestis  transport protein ypo1716 or y1878 SWALL:Q8ZFI7 (EMBL:AJ414150) (465 aa) fasta scores: E(): 5.1e-137, 81.68% id in 464 aa, and to Escherichia coli hypothetical symporter ydjn ydjn or b1729 SWALL:YDJN_ECOLI (SWALL:P77529) (463 aa) fasta scores: E(): 5e-135, 81.42% id in 463 aa
YP_050506.1	osmotically-inducible lipoprotein E; activator of ntr-like gene protein
YP_050507.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_050508.1	Similar to Escherichia coli O6 hypothetical protein yddg or c1902 SWALL:Q8FHH9 (EMBL:AE016760) (293 aa) fasta scores: E(): 3.5e-58, 49.14% id in 291 aa, and to Salmonella typhimurium  permease yddg or stm1571 SWALL:Q8ZPE4 (EMBL:AE008768) (274 aa) fasta scores: E(): 3.1e-53, 48.7% id in 271 aa
YP_050509.1	Similar to Yersinia pestis  ABC transporter ATP-binding protein ypo1735 or y2573 SWALL:Q8ZFH4 (EMBL:AJ414150) (572 aa) fasta scores: E(): 3.6e-167, 79.37% id in 572 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu1738 or agr_c_3190 SWALL:Q8UEL9 (EMBL:AE009130) (598 aa) fasta scores: E(): 1.2e-148, 69.59% id in 569 aa
YP_050510.1	Similar to Salmonella typhi hypothetical protein Sty2982 SWALL:Q8Z4B1 (EMBL:AL627276) (114 aa) fasta scores: E(): 6.2e-26, 58.92% id in 112 aa, and to Escherichia coli O6 hypothetical protein ygba or c3293 SWALL:AAN81742 (EMBL:AE016765) (114 aa) fasta scores: E(): 2.5e-25, 58.03% id in 112 aa
YP_050511.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_050512.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_050513.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_050514.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_050515.1	Similar to Escherichia coli, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L35 rpmi or b1717 or z2746 or ecs2424 or stm1335 or sty1776 or sf1514 SWALL:RL35_ECOLI (SWALL:P07085) (64 aa) fasta scores: E(): 4.3e-23, 92.18% id in 64 aa
YP_050516.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_050517.1	catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_050518.1	Similar to Escherichia coli aromatic amino acid transport protein AroP or b0112 SWALL:AROP_ECOLI (SWALL:P15993) (457 aa) fasta scores: E(): 4.4e-119, 68.28% id in 454 aa, and to Escherichia coli phenylalanine-specific permease PheP or b0576 SWALL:PHEP_ECOLI (SWALL:P24207) (458 aa) fasta scores: E(): 4.2e-117, 67.49% id in 443 aa
YP_050519.1	Similar to Yersinia pestis hypothetical protein ypo1740 or y2567 SWALL:YH40_YERPE (SWALL:Q8ZFG9) (91 aa) fasta scores: E(): 4.3e-07, 46.51% id in 86 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1401 SWALL:AAN43002 (EMBL:AE015164) (95 aa) fasta scores: E(): 4.6e-06, 36.36% id in 88 aa
YP_050520.1	Similar to Pectobacterium carotovorum subsp. atrosepticum KdgR repressor kdgR SWALL:Q8KM23 (EMBL:AJ504847) (263 aa) fasta scores: E(): 5.4e-99, 97.33% id in 263 aa, and to Erwinia chrysanthemi pectin degradation repressor protein KdgR SWALL:KDGR_ERWCH (SWALL:P37728) (305 aa) fasta scores: E(): 2.8e-92, 91.25% id in 263 aa
YP_050521.1	Similar to Erwinia chrysanthemi oligogalacturonate lyase Ogl SWALL:OGL_ERWCH (SWALL:P21258) (388 aa) fasta scores: E(): 1.1e-155, 87.85% id in 387 aa, and to Erwinia carotovora oligogalacturonide lyase Ogl SWALL:OGL_ERWCA (SWALL:Q59418) (388 aa) fasta scores: E(): 3.2e-171, 97.93% id in 388 aa
YP_050522.1	metalloprotease
YP_050523.1	Similar to Xanthomonas axonopodis glycerophosphodiester phosphodiesterase GlpQ or xac1147 SWALL:Q8PNC6 (EMBL:AE011744) (273 aa) fasta scores: E(): 1.4e-20, 32.25% id in 279 aa, and to Agrobacterium tumefaciens hypothetical protein atu4572 atu4572 or agr_l_598 SWALL:Q8U782 (EMBL:AE009385) (306 aa) fasta scores: E(): 1.1e-38, 39.31% id in 262 aa
YP_050524.1	Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol-3-phosphate-binding periplasmic protein precursor UgpB or b3453 or z4822 or ecs4299 SWALL:UGPB_ECOLI (SWALL:P10904) (438 aa) fasta scores: E(): 2.4e-110, 62.67% id in 426 aa
YP_050525.1	Similar to Escherichia coli hypothetical protein yhjx or b3547 SWALL:YHJX_ECOLI (SWALL:P37662) (402 aa) fasta scores: E(): 1.7e-63, 45.99% id in 387 aa, and to Archaeoglobus fulgidus oxalate/formate antiporter af0367 SWALL:O29880 (EMBL:AE001079) (397 aa) fasta scores: E(): 6.5e-38, 32.33% id in 399 aa
YP_050526.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical response regulatory protein ypdb or b2381 or z3646 or ecs3261 or sf2444.2 SWALL:YPDB_ECOLI (SWALL:P77742) (244 aa) fasta scores: E(): 1.6e-73, 75.9% id in 249 aa, and to Klebsiella pneumoniae MrkE protein MrkE SWALL:MRKE_KLEPN (SWALL:P21649) (269 aa) fasta scores: E(): 1e-49, 73.4% id in 188 aa
YP_050527.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ypda or b2380 or z3645 or ecs3260 SWALL:YPDA_ECOLI (SWALL:P76523) (565 aa) fasta scores: E(): 1.9e-161, 75.67% id in 559 aa, and to Fusobacterium nucleatum autolysin sensor kinase fn0220 SWALL:Q8R6B2 (EMBL:AE010534) (541 aa) fasta scores: E(): 1e-73, 40.89% id in 538 aa
YP_050528.1	Similar to Caulobacter crescentus sensory box/ggdef family protein cc3094 SWALL:Q9A3V7 (EMBL:AE005972) (748 aa) fasta scores: E(): 3.4e-74, 34.06% id in 731 aa, and to Rhizobium loti hypothetical protein Mll7787 SWALL:Q984Y8 (EMBL:AP003012) (724 aa) fasta scores: E(): 1.7e-66, 37.17% id in 581 aa
YP_050530.1	Similar to Erwinia carotovora DNA-binding protein RdgA SWALL:RDGA_ERWCA (SWALL:Q47587) (244 aa) fasta scores: E(): 6.8e-85, 92.62% id in 244 aa, and to Bacteriophage phi-80 repressor protein CI SWALL:RPC1_BPPH8 (SWALL:P14819) (235 aa) fasta scores: E(): 1e-48, 58.67% id in 242 aa
YP_050531.1	Similar to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 2.2e-41, 94.01% id in 117 aa, and to Bacteriophage Mu middle operon regulator Mor or 17 or e17 SWALL:VMOR_BPMU (SWALL:P23848) (129 aa) fasta scores: E(): 4.3e-06, 34.28% id in 105 aa
YP_050532.1	Similar to Escherichia coli  electron transport protein yccm or b0992 SWALL:YCCM_ECOLI (SWALL:P52636) (357 aa) fasta scores: E(): 1.4e-90, 68.2% id in 368 aa, and to Shewanella oneidensis iron-sulfur cluster-binding protein so4404 SWALL:AAN57371 (EMBL:AE015873) (375 aa) fasta scores: E(): 2.5e-35, 38.57% id in 337 aa
YP_050533.1	Converts isocitrate to alpha ketoglutarate
YP_050534.1	Similar to Yersinia pestis  pseudouridine synthase ypo1640 or y1801 SWALL:Q8ZFQ3 (EMBL:AJ414149) (208 aa) fasta scores: E(): 9.5e-61, 69.71% id in 208 aa, and to Salmonella typhimurium  ribosomal large subunit pseudouridine synthase ymfc or stm1237 SWALL:Q8ZPZ1 (EMBL:AE008754) (221 aa) fasta scores: E(): 4.4e-60, 69.44% id in 216 aa
YP_050535.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri  nudix hydrolase ymfb or b1134 or c1513 or z1863 or ecs1606 or sf1153 SWALL:YMFB_ECOLI (SWALL:P75965) (153 aa) fasta scores: E(): 2.6e-48, 75.67% id in 148 aa, and to Yersinia pestis hypothetical protein ypo1639 or y1800 SWALL:AAM85368 (EMBL:AJ414149) (148 aa) fasta scores: E(): 8.6e-46, 71.62% id in 148 aa
YP_050536.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_050537.1	HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis
YP_050538.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_050539.1	response regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress
YP_050540.1	Similar to Pectobacterium carotovorum subsp. carotovorum sensor protein PehS SWALL:Q9ZIN8 (EMBL:AF022772) (484 aa) fasta scores: E(): 6.6e-176, 92.35% id in 484 aa, and to Erwinia chrysanthemi PhoQ protein phoQ SWALL:CAD33238 (EMBL:AJ489252) (491 aa) fasta scores: E(): 4.1e-152, 76.97% id in 482 aa
YP_050541.1	Similar to Yersinia pestis hypothetical protein Ypo1632 SWALL:Q8ZFQ9 (EMBL:AJ414149) (373 aa) fasta scores: E(): 2.6e-125, 77.74% id in 373 aa, and to Escherichia coli hypothetical protein ycfd or b1128 SWALL:YCFD_ECOLI (SWALL:P27431) (373 aa) fasta scores: E(): 2.6e-124, 77.08% id in 371 aa
YP_050542.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_050543.1	functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase
YP_050544.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component
YP_050545.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component
YP_050546.1	can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotD is a periplasmic component that binds the substrate
YP_050547.1	Similar to Escherichia coli, and Shigella flexneri methylated-DNA--protein-cysteine methyltransferase Ogt or b1335 or sf1835 SWALL:OGT_ECOLI (SWALL:P09168) (171 aa) fasta scores: E(): 1.3e-13, 45.79% id in 107 aa, and to Mycoplasma penetrans 6-O-methylguanine DNA methyltransferas mype1850 SWALL:BAC43976 (EMBL:AP004170) (176 aa) fasta scores: E(): 1.1e-30, 46.51% id in 172 aa. Also similar to ECA2208 (40.331% id. in 181 aa overlap)
YP_050548.1	Similar to Escherichia coli fosmidomycin resistance protein Fsr or b0479 SWALL:FSR_ECOLI (SWALL:P52067) (406 aa) fasta scores: E(): 3.6e-77, 56.46% id in 356 aa, and to Pseudomonas putida antibiotic mfs transporter,  pp2366 SWALL:AAN67979 (EMBL:AE016782) (420 aa) fasta scores: E(): 2.2e-89, 62.29% id in 358 aa
YP_050549.1	Partial CDS. Similar to the C-terminal regions of many including Pseudomonas aeruginosa probable transcriptional regulator pa2488 SWALL:Q9I0Z4 (EMBL:AE004676) (254 aa) fasta scores: E(): 0.0017, 50% id in 42 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20956 SWALL:AAO07868 (EMBL:AE016811) (259 aa) fasta scores: E(): 0.0035, 48.78% id in 41 aa
YP_050550.1	Similar to Thauera aromatica BbsI SWALL:Q9KJE6 (EMBL:AF173961) (209 aa) fasta scores: E(): 2.2e-39, 47.82% id in 207 aa, and to Xanthomonas campestris hypothetical protein Xcc0182 xcc0182 SWALL:Q8PE01 (EMBL:AE012114) (203 aa) fasta scores: E(): 5.5e-35, 46.63% id in 208 aa
YP_050551.1	Similar to Yersinia pestis  AraC-family transcriptional regulatory protein ypo1837 SWALL:Q8ZF81 (EMBL:AJ414150) (291 aa) fasta scores: E(): 2.9e-17, 29.28% id in 239 aa, and to Salmonella typhimurium bacterial regulatory protein, arac family stm1082 SWALL:Q8ZQ62 (EMBL:AE008747) (259 aa) fasta scores: E(): 1.9e-16, 31.32% id in 249 aa
YP_050552.1	Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3
YP_050553.1	affects solute and DNA transport through an unknown mechanism
YP_050554.1	Similar to Yersinia pestis hypothetical protein Ypo1703 SWALL:Q8ZFK0 (EMBL:AJ414150) (165 aa) fasta scores: E(): 6.2e-43, 66.25% id in 160 aa, and to Shigella flexneri orf, conserved hypothetical protein yebr or sf1393 SWALL:AAN42994 (EMBL:AE015164) (165 aa) fasta scores: E(): 1.6e-41, 63.8% id in 163 aa
YP_050555.1	Similar to Yersinia pestis  membrane protein ypo1702 or y1864 SWALL:AAM85431 (EMBL:AJ414150) (450 aa) fasta scores: E(): 7.4e-114, 68.47% id in 406 aa, and to Salmonella typhimurium  inner membrane protein yebs or stm1848 SWALL:Q8ZNZ4 (EMBL:AE008782) (427 aa) fasta scores: E(): 1.7e-111, 65.69% id in 411 aa
YP_050556.1	Similar to Yersinia pestis hypothetical protein y1863 SWALL:AAM85430 (EMBL:AE013789) (885 aa) fasta scores: E(): 0, 70.97% id in 882 aa, and to Escherichia coli hypothetical protein yebt or b1834 SWALL:YEBT_ECOLI (SWALL:P76272) (877 aa) fasta scores: E(): 0, 68.98% id in 877 aa
YP_050557.1	in Escherichia coli this enzyme specifically methylates C1407 of the 16S rRNA
YP_050558.1	Similar to Escherichia coli hypothetical protein yebw yebw or b1837 SWALL:YEBW_ECOLI (SWALL:P76275) (63 aa) fasta scores: E(): 2e-19, 69.84% id in 63 aa, and to Salmonella typhi  secreted protein sty1983 SWALL:Q8Z660 (EMBL:AL627272) (63 aa) fasta scores: E(): 1.6e-18, 65.07% id in 63 aa
YP_050559.1	Similar to Salmonella typhimurium  inner membrane protein stm0381 SWALL:Q8ZRF2 (EMBL:AE008713) (237 aa) fasta scores: E(): 6.8e-42, 50.22% id in 227 aa, and to Pseudomonas putida conserved hypothetical protein pp1511 SWALL:AAN67132 (EMBL:AE016779) (229 aa) fasta scores: E(): 2e-31, 41.55% id in 231 aa
YP_050561.1	Similar to Salmonella typhimurium  outer membrane protein ycfr or stm1214 SWALL:Q8ZQ03 (EMBL:AE008753) (85 aa) fasta scores: E(): 2.6e-06, 48.23% id in 85 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein ybij precursor ybij or b0802 or c0886 or sf0752 SWALL:YBIJ_ECOLI (SWALL:P41038) (86 aa) fasta scores: E(): 1.3e-05, 52.32% id in 86 aa
YP_050562.1	Similar to Bradyrhizobium japonicum Bll0285 protein Bll0285 SWALL:BAC45550 (EMBL:AP005935) (134 aa) fasta scores: E(): 1.4e-09, 40.19% id in 102 aa
YP_050563.1	Similar to Shewanella oneidensis cold shock domain family protein so0733 SWALL:AAN53811 (EMBL:AE015518) (203 aa) fasta scores: E(): 1.3e-07, 47.14% id in 70 aa, and to Vibrio vulnificus cold shock domain family protein vv12532 SWALL:AAO10888 (EMBL:AE016805) (155 aa) fasta scores: E(): 5.8e-07, 57.5% id in 40 aa
YP_050564.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cold shock-like protein CspG or CspI or b0990 or c1123 or z1406 or ecs1145 or sf0991 SWALL:CSPG_ECOLI (SWALL:Q47130) (70 aa) fasta scores: E(): 8.2e-22, 80% id in 70 aa
YP_050565.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein yeby precursor yeby or b1839 or sf1850 SWALL:YEBY_ECOLI (SWALL:P76277) (113 aa) fasta scores: E(): 7.8e-23, 56.63% id in 113 aa, and to Yersinia pestis  exported protein ypo1786 or y2521 SWALL:Q8ZFC8 (EMBL:AJ414150) (118 aa) fasta scores: E(): 1.1e-22, 57.14% id in 112 aa
YP_050566.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ferritin 1 SWALL:FTNA_ECOLI (SWALL:P23887) (165 aa) fasta scores: E(): 7.7e-40, 65.21% id in 161 aa
YP_050567.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri DNA polymerase III, theta subunit HolE or b1842 or c2252 or z2891 or ecs2552 or sf1852.1 SWALL:HOLE_ECOLI (SWALL:P28689) (76 aa) fasta scores: E(): 8.7e-18, 67.1% id in 76 aa
YP_050568.1	Similar to Escherichia coli protease II PtrB or Tlp or b1845 SWALL:PTRB_ECOLI (SWALL:P24555) (686 aa) fasta scores: E(): 2e-180, 63.93% id in 671 aa
YP_050569.1	non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis
YP_050570.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_050571.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_050572.1	Represses the expression of the zwf, eda, glp and gap
YP_050573.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_050574.1	Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA
YP_050575.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical metalloprotease yeba precursor yeba or b1856 or c2270 or sf1866 SWALL:YEBA_ECOLI (SWALL:P24204) (440 aa) fasta scores: E(): 6.7e-128, 75.11% id in 442 aa, and to Salmonella typhimurium  peptidase yeba or stm1890 SWALL:Q8ZNV9 (EMBL:AE008784) (439 aa) fasta scores: E(): 5.8e-128, 75.05% id in 441 aa
YP_050576.1	involved in transport of zinc(II) with ZnuA and C
YP_050577.1	involved in transport of zinc(II) with ZnuA and C
YP_050578.1	involved in transport of zinc(II) with ZnuA and C
YP_050579.1	Similar to Haemophilus influenzae galactose operon repressor GalR or GalS or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 5.7e-09, 31.02% id in 303 aa, and to Staphylococcus xylosus probable catabolite control protein A CcpA SWALL:CCPA_STAXY (SWALL:Q56194) (329 aa) fasta scores: E(): 2.5e-08, 26.36% id in 311 aa
YP_050580.1	Similar to Lactobacillus casei PTS system, lactose-specific IIbc component LacE SWALL:PTLB_LACCA (SWALL:P24400) (577 aa) fasta scores: E(): 7.3e-42, 30.84% id in 428 aa, and to Vibrio cholerae PTS system, cellobiose-specific iic component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 2.2e-93, 47.67% id in 430 aa
YP_050581.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 1.8e-14, 48.45% id in 97 aa
YP_050582.1	Weakly similar to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 7.1e-14, 25.87% id in 398 aa, and to Escherichia coli maltoporin precursor LamB or MalB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 3.4e-05, 24.11% id in 394 aa
YP_050583.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_050584.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_050585.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_050586.1	Similar to Yersinia pestis hypothetical protein Ypo2055 SWALL:Q8ZEU8 (EMBL:AJ414151) (247 aa) fasta scores: E(): 2.7e-83, 91.09% id in 247 aa, and to Escherichia coli protein yebc or b1864 SWALL:YEBC_ECOLI (SWALL:P24237) (246 aa) fasta scores: E(): 4.9e-81, 87.44% id in 247 aa
YP_050587.1	converts dATP to dAMP and pyrophosphate
YP_050588.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_050589.1	Similar to Vibrio vulnificus predicted signal transduction protein vv12911 SWALL:AAO11244 (EMBL:AE016806) (404 aa) fasta scores: E(): 4.7e-60, 41.33% id in 404 aa, and to Bacillus subtilis hypothetical protein YuxH SWALL:YUXH_BACSU (SWALL:P14203) (409 aa) fasta scores: E(): 6e-34, 30.26% id in 413 aa
YP_050590.1	Similar to Yersinia pestis hypothetical protein ypo2052 or y2259 SWALL:Q8ZEV1 (EMBL:AJ414151) (271 aa) fasta scores: E(): 6.2e-52, 74.84% id in 159 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yece or stm1903 or sty2111 SWALL:Q8XFY8 (EMBL:AE008785) (272 aa) fasta scores: E(): 2.2e-46, 66.25% id in 160 aa
YP_050591.1	Similar to Shigella flexneri orf, hypothetical protein sf1053 SWALL:AAN42675 (EMBL:AE015133) (167 aa) fasta scores: E(): 3.2e-16, 43.42% id in 152 aa
YP_050595.1	Similar to Paramecium bursaria chlorella virus 1 A641L protein a641L SWALL:O41123 (EMBL:U42580) (85 aa) fasta scores: E(): 9.9, 36.36% id in 44 aa
YP_050596.1	Similar to Escherichia coli resolvase ParA SWALL:PAA4_ECOLI (SWALL:P22996) (219 aa) fasta scores: E(): 6.8e-15, 32.81% id in 192 aa, and to Agrobacterium tumefaciens resolvase ParA or atu3849 or agr_l_1981 SWALL:Q8U979 (EMBL:AE009315) (250 aa) fasta scores: E(): 5.3e-41, 59.11% id in 203 aa
YP_050599.1	Similar to Bacillus subtilis  DNA recombinase CisA or spoivcA SWALL:CISA_BACSU (SWALL:P17867) (500 aa) fasta scores: E(): 0.03, 23.63% id in 440 aa, and to Staphylococcus aureus cassette chromosome recombinase B CcrB SWALL:Q8RPD2 (EMBL:AF411935) (442 aa) fasta scores: E(): 7e-05, 23.07% id in 442 aa, and to Bacteriophage U153 u153 InTegrase Int SWALL:Q8LTD8 (EMBL:AJ417489) (452 aa) fasta scores: E(): 0.77, 23.1% id in 489 aa
YP_050600.1	Similar to the C-terminal regions of Yersinia pestis hypothetical protein ypo2052 or y2259 SWALL:Q8ZEV1 (EMBL:AJ414151) (271 aa) fasta scores: E(): 1.2e-23, 58.26% id in 115 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yece or stm1903 or sty2111 SWALL:Q8XFY8 (EMBL:AE008785) (272 aa) fasta scores: E(): 2.6e-21, 54.78% id in 115 aa
YP_050601.1	Similar to Yersinia pestis  membrane protein ypo2051 or y2260 SWALL:Q8ZEV2 (EMBL:AJ414151) (131 aa) fasta scores: E(): 8.2e-45, 81.53% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yecn or stm1904 or sty2112 SWALL:Q8XFZ4 (EMBL:AE008785) (131 aa) fasta scores: E(): 1.2e-40, 71.75% id in 131 aa
YP_050602.1	Similar to Yersinia pestis hypothetical protein ypo2050 or y2261 SWALL:AAM85821 (EMBL:AJ414151) (267 aa) fasta scores: E(): 2.9e-78, 80% id in 250 aa, and to Escherichia coli protein yeco or b1870 SWALL:YECO_ECOLI (SWALL:P76290) (247 aa) fasta scores: E(): 4.3e-78, 80.56% id in 247 aa
YP_050603.1	Similar to Yersinia pestis hypothetical protein ypo2049 or y2262 SWALL:Q8ZEV4 (EMBL:AJ414151) (323 aa) fasta scores: E(): 1.3e-113, 81.42% id in 323 aa, and to Salmonella typhi hypothetical protein Sty2114 SWALL:Q8Z5W0 (EMBL:AL627272) (323 aa) fasta scores: E(): 2.8e-105, 76.78% id in 323 aa
YP_050609.1	Similar to Escherichia coli, and Shigella flexneri copper homeostasis protein CutC or CutCM or b1874 or sf1915 SWALL:CUTC_ECOLI (SWALL:P46719) (248 aa) fasta scores: E(): 1.9e-55, 57.74% id in 239 aa
YP_050610.1	Similar to Escherichia coli protein yecm or b1875 SWALL:YECM_ECOLI (SWALL:P52007) (188 aa) fasta scores: E(): 1.5e-43, 59.88% id in 177 aa, and to Salmonella typhi hypothetical protein Sty2116 SWALL:Q8Z5V8 (EMBL:AL627272) (189 aa) fasta scores: E(): 1.4e-42, 58.98% id in 178 aa
YP_050611.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_050612.1	Similar to Escherichia coli, and Escherichia coli O157:H7 virulence factor MviN homolog MviN or b1069 or z1707 or ecs1447 SWALL:MVIN_ECOLI (SWALL:P75932) (511 aa) fasta scores: E(): 1.2e-160, 81.99% id in 511 aa, and to Yersinia pestis  membrane protein mvin or ypo2043 or y2269 SWALL:AAM85829 (EMBL:AJ414151) (511 aa) fasta scores: E(): 5.1e-165, 84.51% id in 510 aa
YP_050613.1	Similar to Salmonella typhimurium virulence factor MviM or stm1169 SWALL:MVIM_SALTY (SWALL:P37168) (307 aa) fasta scores: E(): 2.9e-71, 63.3% id in 297 aa, and to Escherichia coli virulence factor MviM homolog MviM or b1068 SWALL:MVIM_ECOLI (SWALL:P75931) (307 aa) fasta scores: E(): 1.2e-67, 60% id in 300 aa
YP_050614.1	Similar to Escherichia coli hypothetical protein yceh or b1067 SWALL:YCEH_ECOLI (SWALL:P29217) (215 aa) fasta scores: E(): 2e-56, 72.64% id in 212 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yceh or stm1168 or sty1206 SWALL:Q8XF09 (EMBL:AE008750) (215 aa) fasta scores: E(): 1.9e-54, 69.81% id in 212 aa
YP_050615.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ribosomal-protein-alanine acetyltransferase RimJ or b1066 or z1703 or ecs1444 or sf1072 SWALL:RIMJ_ECOLI (SWALL:P09454) (194 aa) fasta scores: E(): 3.3e-67, 77.31% id in 194 aa
YP_050616.1	Confers resistance to norfloxacin and enoxacin
YP_050617.1	cofactor involved in the reduction of disulfides
YP_050618.1	Similar to Yersinia pestis  lipoprotein ypo2039 SWALL:Q8ZEW4 (EMBL:AJ414151) (187 aa) fasta scores: E(): 2.6e-47, 73.93% id in 188 aa, and to Escherichia coli, and Shigella flexneri  lipoprotein yceb precursor yceb or b1063 or sf1069 SWALL:YCEB_ECOLI (SWALL:P09995) (186 aa) fasta scores: E(): 2.3e-40, 65.02% id in 183 aa
YP_050619.1	Similar to Yersinia pestis hypothetical protein ypo2038 or y2274 SWALL:AAM85834 (EMBL:AJ414151) (186 aa) fasta scores: E(): 2.8e-45, 67.22% id in 180 aa, and to Escherichia coli hypothetical protein ycdy or b1035 SWALL:YCDY_ECOLI (SWALL:P75915) (184 aa) fasta scores: E(): 1.1e-41, 60.42% id in 187 aa
YP_050620.1	Similar to Yersinia pestis hypothetical protein Ypo2037 SWALL:Q8ZEW6 (EMBL:AJ414151) (245 aa) fasta scores: E(): 1.1e-84, 84.89% id in 245 aa, and to Salmonella typhimurium, and Salmonella typhi  histidinol phosphatase and related hydrolases of the php family ycdx or stm1136 or sty1173 SWALL:Q8XGW8 (EMBL:AE008749) (245 aa) fasta scores: E(): 1.8e-76, 75.1% id in 245 aa
YP_050621.1	Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 2.1e-53, 42.66% id in 525 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsc1155 or rs04596 SWALL:Q8Y089 (EMBL:AL646063) (629 aa) fasta scores: E(): 5e-74, 47.39% id in 538 aa
YP_050622.1	Similar to Yersinia pestis  lipoprotein protein ypo1422 or y2746 SWALL:Q8ZG84 (EMBL:AJ414148) (192 aa) fasta scores: E(): 4.8e-43, 62.43% id in 189 aa, and to Salmonella typhimurium, and Salmonella typhi  outer membrane protein ymba or stm1065 or sty1086 SWALL:Q8XG15 (EMBL:AE008746) (187 aa) fasta scores: E(): 2.6e-38, 54.54% id in 187 aa
YP_050623.1	Similar to Escherichia coli paraquat-inducible protein B PqiB or Pqi5b or b0951 SWALL:PQIB_ECOLI (SWALL:P43671) (546 aa) fasta scores: E(): 3.8e-141, 66.72% id in 544 aa
YP_050624.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri paraquat-inducible protein A PqiA or Pqi5a or b0950 or c1086 or sf0951 SWALL:PQIA_ECOLI (SWALL:P43670) (417 aa) fasta scores: E(): 3.7e-111, 66.42% id in 411 aa
YP_050625.1	Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth
YP_050626.1	catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA
YP_050627.1	Similar to Yersinia pestis  iron-sulfur binding protein ypo1417 or y2752 SWALL:Q8ZG89 (EMBL:AJ414148) (370 aa) fasta scores: E(): 1.8e-107, 70.76% id in 366 aa, and to Salmonella typhimurium  iron-sulfur protein stm1060 SWALL:Q8ZQ74 (EMBL:AE008746) (369 aa) fasta scores: E(): 1.3e-97, 65.04% id in 369 aa
YP_050628.1	Similar to Yersinia pestis hypothetical protein ypo1416 or y2753 SWALL:AAM86305 (EMBL:AJ414148) (183 aa) fasta scores: E(): 2e-44, 62.42% id in 173 aa, and to Escherichia coli hypothetical protein ycbw or b0946 SWALL:YCBW_ECOLI (SWALL:P75862) (180 aa) fasta scores: E(): 7.3e-42, 60.47% id in 167 aa
YP_050629.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_050630.1	Similar to Escherichia coli aminopeptidase N PepN or b0932 SWALL:AMPN_ECOLI (SWALL:P04825) (869 aa) fasta scores: E(): 0, 75.66% id in 867 aa
YP_050631.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_050632.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_050633.1	Similar to Escherichia coli outer membrane protein N precursor OmpN or b1377 SWALL:OMPN_ECOLI (SWALL:P77747) (377 aa) fasta scores: E(): 1.1e-76, 53.86% id in 388 aa
YP_050634.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_050635.1	Similar to Yersinia pestis metallo-beta-lactamase superfamily protein ypo1409 or y2761 SWALL:Q8ZG96 (EMBL:AJ414148) (215 aa) fasta scores: E(): 8.9e-67, 72.55% id in 215 aa, and to Escherichia coli hypothetical protein ycbl or b0927 SWALL:YCBL_ECOLI (SWALL:P75849) (215 aa) fasta scores: E(): 3.5e-65, 70.23% id in 215 aa
YP_050636.1	Similar to Yersinia pestis  exported protein ypo1408 or y2762 SWALL:Q8ZG97 (EMBL:AJ414148) (182 aa) fasta scores: E(): 4.6e-60, 82.41% id in 182 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycbk or b0926 or c1068 or z1273 or ecs1009 or sf0923 SWALL:YCBK_ECOLI (SWALL:P75848) (182 aa) fasta scores: E(): 5.1e-56, 78.57% id in 182 aa
YP_050637.1	Similar to Yersinia pestis  exported protein ypo1407 or y2763 SWALL:AAM86315 (EMBL:AJ414148) (618 aa) fasta scores: E(): 1.4e-92, 60.48% id in 615 aa, and to Vibrio cholerae hypothetical protein Vc1268 SWALL:Q9KSI8 (EMBL:AE004206) (524 aa) fasta scores: E(): 7.1e-47, 36.56% id in 495 aa
YP_050638.1	SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects
YP_050639.1	acts with MukB and MukF to condense the chromosome and allow for segregation during cell division
YP_050640.1	acts with MukB and MukE to condense the chromosome and allow for segregation during cell division
YP_050641.1	involved in cellular zinc and cadmium homeostasis by binding excess metal ions to its cysteine sulfurs and histidine nitrogens; expression of smtA in cyanobacteria is repressed by SmtB at low concentrations of zinc; NO elicits release of Zn ions from SmtA
YP_050642.1	Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ycbc or b0920 or z1267 or ecs1003 SWALL:YCBC_ECOLI (SWALL:P36565) (259 aa) fasta scores: E(): 2.7e-64, 65.25% id in 259 aa, and to Salmonella typhi  membrane protein sty0992 SWALL:Q8Z7Z8 (EMBL:AL627268) (258 aa) fasta scores: E(): 6.7e-65, 66.02% id in 259 aa
YP_050643.1	Similar to Yersinia pestis hypothetical protein Ypo1401 SWALL:Q8ZGA3 (EMBL:AJ414148) (297 aa) fasta scores: E(): 4.9e-98, 73.4% id in 297 aa, and to Salmonella typhimurium mukf protein stm0989 SWALL:Q8ZQB9 (EMBL:AE008742) (297 aa) fasta scores: E(): 2e-77, 58.78% id in 296 aa
YP_050644.1	Similar to Erwinia chrysanthemi pectate lyase L precursor PelL SWALL:PELL_ERWCH (SWALL:Q47473) (425 aa) fasta scores: E(): 9.3e-21, 39.57% id in 422 aa, and to Erwinia chrysanthemi pectate lyase PelL1 SWALL:Q9RP65 (EMBL:AF171228) (425 aa) fasta scores: E(): 2.9e-20, 37.79% id in 418 aa
YP_050645.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_050646.1	Similar to Yersinia pestis hypothetical protein Ypo1399 SWALL:Q8ZGA5 (EMBL:AJ414148) (60 aa) fasta scores: E(): 7.1e-19, 85.96% id in 57 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein ycar or stm0987 or sty0989 SWALL:Q8XEM5 (EMBL:AE008742) (60 aa) fasta scores: E(): 9.9e-17, 75.43% id in 57 aa
YP_050647.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_050648.1	involved in the transport of lipid A across the inner membrane
YP_050649.1	Similar to Yersinia pestis  membrane protein ypo1394 or y2778 SWALL:Q8ZGB0 (EMBL:AJ414148) (763 aa) fasta scores: E(): 7.2e-161, 50.19% id in 763 aa, and to Salmonella typhi  competence-related protein sty0984 SWALL:Q8Z802 (EMBL:AL627268) (754 aa) fasta scores: E(): 7.2e-126, 42.52% id in 762 aa
YP_050650.1	Similar to Yersinia pestis, and Yersinia pseudotuberculosis transposase for the IS1541 insertion element SWALL:Q9X9F5 (EMBL:AJ414159) (152 aa) fasta scores: E(): 4.9e-63, 96.05% id in 152 aa
YP_050651.1	Similar to Yersinia pestis hypothetical protein Ypo1560 SWALL:Q8ZFW5 (EMBL:AJ414149) (105 aa) fasta scores: E(): 3e-31, 94.28% id in 105 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein YeeX or b2007 or c2534 or sf2067 SWALL:YEEX_ECOLI (SWALL:P76367) (109 aa) fasta scores: E(): 3.5e-27, 85.14% id in 101 aa
YP_050652.1	Similar to Yersinia pestis  iron ABC transporter, ATP-binding protein ypo4025 or FecE or y4046 SWALL:AAM87590 (EMBL:AJ414160) (252 aa) fasta scores: E(): 2.1e-63, 72.61% id in 252 aa, and to Brucella melitensis iron bmeii0604 SWALL:Q8YCC8 (EMBL:AE009696) (252 aa) fasta scores: E(): 1.6e-54, 61.75% id in 251 aa
YP_050653.1	Similar to Yersinia pestis  iron transport permease ypo4024 SWALL:Q8ZA02 (EMBL:AJ414160) (335 aa) fasta scores: E(): 3.2e-76, 66.13% id in 313 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2475 or agr_c_4491 SWALL:Q8UCK8 (EMBL:AE009194) (322 aa) fasta scores: E(): 8.2e-58, 51.63% id in 306 aa
YP_050654.1	Similar to Yersinia pestis  iron transport permease ypo4023 or y4044 SWALL:Q8ZA03 (EMBL:AJ414160) (319 aa) fasta scores: E(): 2.3e-88, 73.18% id in 317 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu2474 or agr_c_4489 SWALL:Q8UCK9 (EMBL:AE009194) (321 aa) fasta scores: E(): 5.5e-66, 55.76% id in 321 aa
YP_050655.1	Similar to Yersinia pestis  solute-binding iron ABC transport protein y4043 SWALL:AAM87587 (EMBL:AE014006) (329 aa) fasta scores: E(): 4.7e-74, 62.54% id in 315 aa, and to Brucella melitensis ferric anguibactin-binding protein bmeii0607 SWALL:Q8YCC5 (EMBL:AE009697) (293 aa) fasta scores: E(): 1.2e-49, 48.09% id in 289 aa
YP_050656.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_050657.1	Similar to Yersinia pestis amino acid permease ypo1557 or y2612 SWALL:Q8ZFW8 (EMBL:AJ414149) (463 aa) fasta scores: E(): 7.8e-146, 82.96% id in 446 aa, and to Salmonella enterica subsp. enterica serovar Typhi Ty2 amino acid transporter protein yeef or t0806 SWALL:AAO68497 (EMBL:AE016836) (454 aa) fasta scores: E(): 7.5e-138, 77.35% id in 446 aa
YP_050659.1	Similar to Yersinia pestis hypothetical protein ypo3220 or y0968 SWALL:Q8ZC10 (EMBL:AJ414156) (252 aa) fasta scores: E(): 2.3e-48, 50.8% id in 250 aa, and to Salmonella typhimurium  inner membrane protein ycgr or stm1798 SWALL:Q8ZP19 (EMBL:AE008780) (244 aa) fasta scores: E(): 9.8e-33, 42.73% id in 241 aa
YP_050660.1	Similar to Escherichia coli 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase CitG or b0613 SWALL:CITG_ECOLI (SWALL:P77231) (292 aa) fasta scores: E(): 2.3e-42, 50% id in 262 aa, and to Klebsiella pneumoniae 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase CitG SWALL:CITG_KLEPN (SWALL:P45414) (302 aa) fasta scores: E(): 1.3e-48, 53.33% id in 270 aa
YP_050661.1	Similar to Escherichia coli, and Escherichia coli O157:H7 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase citx or b0614 or z0758 or ecs0653 SWALL:CITX_ECOLI (SWALL:P77563) (183 aa) fasta scores: E(): 6.7e-24, 40.85% id in 164 aa
YP_050662.1	Similar to Klebsiella pneumoniae citrate lyase alpha chain CitF SWALL:CILA_KLEPN (SWALL:P45413) (508 aa) fasta scores: E(): 1.3e-132, 67.52% id in 508 aa, and to Escherichia coli citrate lyase alpha chain citf or b0615 SWALL:CILA_ECOLI (SWALL:P75726) (510 aa) fasta scores: E(): 4.6e-131, 67.25% id in 510 aa
YP_050663.1	Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 1.3e-80, 72.56% id in 288 aa, and to Escherichia coli, and Escherichia coli O6 citrate lyase beta chain CitE or b0616 or c0706 SWALL:CILB_ECOLI (SWALL:P77770) (302 aa) fasta scores: E(): 2.7e-74, 65.17% id in 290 aa
YP_050664.1	acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate
YP_050665.1	Similar to Klebsiella pneumoniae [citrate [pro-3s]-lyase] ligase CitC SWALL:CITC_KLEPN (SWALL:P45410) (342 aa) fasta scores: E(): 7.6e-56, 43.24% id in 333 aa, and to Escherichia coli [citrate [pro-3s]-lyase] ligase CitC or b0618 SWALL:CITC_ECOLI (SWALL:P77390) (352 aa) fasta scores: E(): 4.6e-57, 46.43% id in 351 aa
YP_050666.1	Similar to Burkholderia cepacia DntG SWALL:Q8VUC7 (EMBL:AF169302) (281 aa) fasta scores: E(): 8.5e-37, 43.61% id in 282 aa, and to Salmonella typhimurium fumarylacetoacetate stm0331 SWALL:Q8ZRI8 (EMBL:AE008710) (292 aa) fasta scores: E(): 1.7e-68, 62.45% id in 285 aa
YP_050667.1	Similar to Klebsiella pneumoniae citrate/acetate antiporter CitW SWALL:Q8VS41 (EMBL:AF411142) (454 aa) fasta scores: E(): 1.9e-136, 76.75% id in 456 aa
YP_050668.1	Similar to Klebsiella pneumoniae sensor kinase CitA SWALL:CITA_KLEPN (SWALL:P52687) (547 aa) fasta scores: E(): 4.7e-85, 44.8% id in 529 aa
YP_050669.1	Similar to Klebsiella pneumoniae transcriptional regulatory protein CitB SWALL:CITB_KLEPN (SWALL:P52688) (234 aa) fasta scores: E(): 7.4e-29, 41.59% id in 226 aa
YP_050670.1	Similar to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 2.9e-54, 41.59% id in 553 aa, and to Yersinia pestis methyl-accepting chemotaxis protein II Tar or ypo4062 or tsr or y4081 SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 2.1e-72, 43.39% id in 643 aa
YP_050671.1	Similar to Salmonella typhimurium methyl-accepting chemotaxis citrate transducer Tcp or stm3577 SWALL:MCPC_SALTY (SWALL:Q02755) (547 aa) fasta scores: E(): 3.7e-57, 47.48% id in 438 aa, and to Yersinia pestis methyl-accepting chemotaxis protein II tar or ypo4062 or tsr or y4081 SWALL:AAM87624 (EMBL:AJ414160) (649 aa) fasta scores: E(): 1.1e-70, 41.68% id in 643 aa
YP_050672.1	Similar to Yersinia pestis  exported protein ypo1551 or y2617 SWALL:Q8ZFX2 (EMBL:AJ414149) (275 aa) fasta scores: E(): 4.4e-71, 65.81% id in 275 aa, and to Shigella flexneri  enzyme of sugar metabolism yeez or sf2075 SWALL:AAN43615 (EMBL:AE015223) (274 aa) fasta scores: E(): 2.7e-69, 64.23% id in 274 aa
YP_050673.1	long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors
YP_050674.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_050675.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_050676.1	catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate
YP_050677.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_050678.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_050679.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_050680.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis
YP_050681.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_050682.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_050683.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_050684.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_050685.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_050686.1	Similar to Yersinia pestis hypothetical protein Ypo1385 SWALL:Q8ZGB8 (EMBL:AJ414148) (588 aa) fasta scores: E(): 5.2e-206, 84.24% id in 584 aa, and to Escherichia coli hypothetical protein ycao or b0905 SWALL:YCAO_ECOLI (SWALL:P75838) (586 aa) fasta scores: E(): 1.9e-200, 81.84% id in 584 aa
YP_050687.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 probable formate transporter 1 FocA or FocA_2 or b0904 or c1042 or z1250 or ecs0987 SWALL:FOCA_ECOLI (SWALL:P21501) (285 aa) fasta scores: E(): 8.3e-94, 80.7% id in 285 aa
YP_050688.1	Similar to Escherichia coli formate acetyltransferase 1 PflB or Pfl or b0903 SWALL:PFLB_ECOLI (SWALL:P09373) (759 aa) fasta scores: E(): 0, 91.3% id in 759 aa
YP_050689.1	Similar to Salmonella typhi hypothetical protein Sty4599 SWALL:Q8Z1G8 (EMBL:AL627283) (125 aa) fasta scores: E(): 0.32, 26.08% id in 115 aa
YP_050690.1	Similar to Escherichia coli prophage P2 Ogr protein OgrK or b2082 SWALL:OGRK_ECOLI (SWALL:P37057) (72 aa) fasta scores: E(): 2.1e-07, 50.98% id in 51 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 2.2e-08, 48.43% id in 64 aa, and to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 7.6e-08, 45.76% id in 59 aa. Also similar to ECA0414 (39.726% id. in 55 aa overlap), and to ECA3454 (43.836% id. in 50 aa overlap), and to ECA0833 (39.216% id. in 51 aa overlap).
YP_050691.1	Similar to Bacteriophage 186 late control gene D protein D SWALL:VPD_BP186 (SWALL:P21679) (389 aa) fasta scores: E(): 1.2e-40, 52.23% id in 358 aa, and to Salmonella typhi  regulator of late gene expression sty3702 or sty2882 SWALL:Q8XG84 (EMBL:AL627279) (366 aa) fasta scores: E(): 2.1e-66, 53.48% id in 344 aa
YP_050692.1	Similar to Bacteriophage P2 major tail sheath protein FI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 3.9e-74, 50% id in 392 aa, and to Escherichia coli O157:H7  tail sheath protein of prophage cp-933t z2991 or ecs2645 SWALL:Q8XBE2 (EMBL:AE005413) (394 aa) fasta scores: E(): 1.2e-109, 69.19% id in 396 aa
YP_050693.1	Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 8e-20, 41.52% id in 171 aa, and to Escherichia coli O157:H7  tail fiber component of prophage cp-933t z2990 or ecs2644 SWALL:Q8XBE3 (EMBL:AE005413) (170 aa) fasta scores: E(): 7.5e-42, 65.88% id in 170 aa
YP_050694.1	Similar to Bacteriophage P2 Gpe SWALL:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): 1.8e-05, 40% id in 85 aa, and to Salmonella typhi  phage tail protein sty3698 or sty2886 SWALL:Q8XFW3 (EMBL:AL627279) (100 aa) fasta scores: E(): 2e-06, 40.74% id in 81 aa
YP_050695.1	Similar to Bacteriophage P2 gpE' SWALL:O64312 (EMBL:AF063097) (142 aa) fasta scores: E(): 2.4e-08, 58.14% id in 43 aa and Bacteriophage 186 orf52 H SWALL:O80316 (EMBL:U32222) (58 aa) fasta scores: E(): 1.1e-08, 59.52% id in 42 aa
YP_050696.1	Similar to Bacteriophage P2 gpt T SWALL:O64314 (EMBL:AF063097) (815 aa) fasta scores: E(): 1.1e-43, 31.97% id in 807 aa and Bacteriophage phi CTX orf25 SWALL:Q9ZXK0 (EMBL:AB008550) (904 aa) fasta scores: E(): 1.7e-45, 30.66% id in 923 aa
YP_050697.1	Similar to Bacteriophage P2 gpu U SWALL:O64315 (EMBL:AF063097) (159 aa) fasta scores: E(): 4.5e-20, 48.8% id in 125 aa. Also similar to Bacteriophage 186 F protein F SWALL:O80317 (EMBL:U32222) (161 aa) fasta scores: E(): 2.4e-22, 44.78% id in 163 aa
YP_050698.1	Similar to Bacteriophage P2 probable tail fiber assembly protein G SWALL:TFA_BPP2 (SWALL:P26699) (175 aa) fasta scores: E(): 0.00029, 34.01% id in 147 aa, and to Bacteriophage lambda tail fiber assembly protein tfA SWALL:TFA_LAMBD (SWALL:P03740) (194 aa) fasta scores: E(): 1.3e-18, 36.11% id in 180 aa
YP_050699.1	Similar to Bacteriophage P2 probable tail fiber protein H SWALL:VPH_BPP2 (SWALL:P26700) (669 aa) fasta scores: E(): 9.6e-27, 37.55% id in 442 aa and Bacteriophage GMSE-1 probable tail fiber protein SWALL:Q9B027 (EMBL:AF311651) (497 aa) fasta scores: E(): 4.1e-49, 56.43% id in 264 aa
YP_050700.1	Similar to Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 1.8e-40, 57.14% id in 175 aa, and to Escherichia coli O6 phage tail protein c0966 SWALL:AAN79439 (EMBL:AE016758) (201 aa) fasta scores: E(): 6e-49, 57.28% id in 199 aa
YP_050701.1	Similar to Bacteriophage P2 baseplate assembly protein GpJ SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 1.8e-56, 54.48% id in 301 aa and to Bacteriophage 186 GpL SWALL:Q37840 (EMBL:U32222) (302 aa) fasta scores: E(): 3.2e-57, 54.81% id in 301 aa
YP_050702.1	Similar to Bacteriophage P2 baseplate assembly protein W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 2.5e-15, 46.72% id in 107 aa, and to Salmonella typhi phage baseplate assembly protein sty3688 SWALL:Q8Z345 (EMBL:AL627279) (119 aa) fasta scores: E(): 4.7e-16, 45.29% id in 117 aa
YP_050703.1	Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 5.6e-19, 42.64% id in 204 aa, and to Salmonella typhi  phage baseplate assembly protein sty3687 SWALL:Q8Z346 (EMBL:AL627279) (192 aa) fasta scores: E(): 7e-20, 37.89% id in 190 aa
YP_050704.1	Similar to Bacteriophage P2 tail completion protein s S SWALL:VPS_BPP2 (SWALL:P36934) (150 aa) fasta scores: E(): 0.017, 24.02% id in 204 aa and to Bacteriophage phi CTX orf14 SWALL:Q9ZXL2 (EMBL:AB008550) (156 aa) fasta scores: E(): 1.7e-07, 32.02% id in 203 aa
YP_050705.1	Similar to Bacteriophage P2 tail completion protein R SWALL:VPR_BPP2 (SWALL:P36933) (155 aa) fasta scores: E(): 9.1e-12, 37.31% id in 134 aa, and to Salmonella typhi phage tail protein sty3685 SWALL:Q8Z348 (EMBL:AL627279) (143 aa) fasta scores: E(): 7.3e-12, 38.16% id in 131 aa
YP_050706.1	Similar to Bacteriophage P2 LysC SWALL:Q8LTD0 (EMBL:AF063097) (96 aa) fasta scores: E(): 8.4e-10, 40.69% id in 86 aa
YP_050707.1	Similar to Bacteriophage P2 protein LysB SWALL:LYSB_BPP2 (SWALL:P51770) (141 aa) fasta scores: E(): 0.023, 28.77% id in 139 aa, and to Salmonella typhi regulatory protein sty3684 SWALL:Q8Z349 (EMBL:AL627279) (142 aa) fasta scores: E(): 1.2e-16, 51.16% id in 129 aa
YP_050708.1	Similar to Vibrio harveyi bacteriophage VHML Orf19 orf19 SWALL:AAN12317 (EMBL:AY133112) (185 aa) fasta scores: E(): 6.7e-25, 40.44% id in 178 aa, and to Salmonella typhi hypothetical protein Sty1889 SWALL:Q8Z6A5 (EMBL:AL627271) (180 aa) fasta scores: E(): 1e-48, 64.44% id in 180 aa
YP_050709.1	Similar to Bacteriophage P2 holin Y SWALL:HOLI_BPP2 (SWALL:P51773) (93 aa) fasta scores: E(): 3.2e-23, 78.02% id in 91 aa, and to Bacteriophage 186 orf24 SWALL:O80308 (EMBL:U32222) (98 aa) fasta scores: E(): 1.3e-23, 72.16% id in 97 aa
YP_050710.1	Similar to Bacteriophage P2 tail protein Gpx SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.8e-10, 54.54% id in 66 aa and Bacteriophage 186 orf23 SWALL:O80307 (EMBL:U32222) (67 aa) fasta scores: E(): 2.4e-10, 50% id in 66 aa
YP_050711.1	Similar to Bacteriophage P2 head completion/stabilization protein L SWALL:VPL_BPP2 (SWALL:P25475) (169 aa) fasta scores: E(): 1.8e-13, 31.28% id in 163 aa and Bacteriophage 186 Q protein Q SWALL:O80306 (EMBL:U32222) (168 aa) fasta scores: E(): 9.4e-14, 33.33% id in 144 aa
YP_050712.1	Similar to Bacteriophage P2 terminase, endonuclease subunit M SWALL:VPM_BPP2 (SWALL:P25476) (247 aa) fasta scores: E(): 5.6e-20, 36.36% id in 220 aa and Bacteriophage 299 small terminase subunit M SWALL:Q94MK1 (EMBL:AJ298566) (247 aa) fasta scores: E(): 4.3e-20, 36.36% id in 220 aa
YP_050713.1	Similar to Bacteriophage P2 major capsid protein precursor N SWALL:VPN_BPP2 (SWALL:P25477) (357 aa) fasta scores: E(): 6.7e-48, 40.69% id in 344 aa
YP_050714.1	Similar to Bacteriophage P2 presumed capsid scaffolding protein O SWALL:VPO_BPP2 (SWALL:P25478) (284 aa) fasta scores: E(): 7.4e-21, 34.16% id in 281 aa
YP_050715.1	Similar to Bacteriophage P2 terminase, ATPase subunit P SWALL:VPP_BPP2 (SWALL:P25479) (590 aa) fasta scores: E(): 8e-79, 45.26% id in 581 aa, and to Bacteriophage phi CTX pseudomonas aeruginosa phage phi ctx SWALL:Q9ZXM5 (EMBL:AB008550) (594 aa) fasta scores: E(): 1.7e-79, 45.81% id in 585 aa
YP_050716.1	Similar to Bacteriophage P2 presumed portal vertex protein Q SWALL:VPQ_BPP2 (SWALL:P25480) (344 aa) fasta scores: E(): 3.8e-60, 44.89% id in 343 aa and Bacteriophage 186 capsid portal protein W SWALL:Q37851 (EMBL:U32222) (340 aa) fasta scores: E(): 1e-61, 46.11% id in 347 aa
YP_050717.1	Similar to Bacteriophage PSA methylase Met SWALL:Q8W5X3 (EMBL:AJ312240) (270 aa) fasta scores: E(): 1.3e-07, 35.08% id in 114 aa, and to uncultured bacterium Upf31.0 protein upf31.0 SWALL:Q8RSH9 (EMBL:AJ431260) (224 aa) fasta scores: E(): 2e-22, 45.88% id in 231 aa
YP_050718.1	Similar to the N-terminal regions of many including Heliobacillus mobilis ATP-dependent clp protease ATP-binding subunit clpx SWALL:AAN87458 (EMBL:AY142854) (420 aa) fasta scores: E(): 0.2, 46.15% id in 39 aa, and to Brucella abortus ClpX SWALL:Q9L7X5 (EMBL:AF218420) (423 aa) fasta scores: E(): 0.28, 42% id in 50 aa
YP_050719.1	Similar to Bacteriophage P2 replication gene A protein A SWALL:VPA_BPP2 (SWALL:Q06419) (761 aa) fasta scores: E(): 4e-50, 32.96% id in 731 aa, and to Escherichia coli O6  replication protein for prophage c0942 SWALL:AAN79415 (EMBL:AE016758) (804 aa) fasta scores: E(): 2.1e-91, 37.13% id in 797 aa
YP_050720.1	Similar to Bacteriophage 186 hypothetical gp84 SWALL:CP84_BP186 (SWALL:P41062) (334 aa) fasta scores: E(): 1.7e-98, 69.69% id in 330 aa
YP_050721.1	Similar to Escherichia coli, and Escherichia coli O157:H7 DNA adenine methylase Dam or b3387 or z4740 or ecs4229 SWALL:DMA_ECOLI (SWALL:P00475) (278 aa) fasta scores: E(): 1e-47, 47.68% id in 281 aa
YP_050722.1	Similar to Salmonella typhimurium phage ST64B Sb30 SWALL:AAL25908 (EMBL:AY055382) (189 aa) fasta scores: E(): 1e-30, 50% id in 186 aa, and in parts to many other Bacteriophage exodeoxyribonuclease. e.g. Bacteriophage T4 DexA SWALL:EXOD_BPT4 (SWALL:P04536) (227 aa) fasta scores: E(): 0.00055, 26.19% id in 210 aa and to the C-terminal region of Escherichia coli O157:H7  exonuclease VIII, ds DNA exonuclease, 5'--> 3' specific encoded by prophage CP-933o exoo or z2037 or ecs1759 SWALL:Q8X287 (EMBL:AE005343) (823 aa) fasta scores: E(): 1.2e-27, 44.44% id in 189 aa
YP_050723.1	Similar to Bacteriophage 186 hypothetical gp79 SWALL:CP79_BP186 (SWALL:P21682) (77 aa) fasta scores: E(): 0.00013, 40.62% id in 64 aa, and to Salmonella typhimurium fels-2 prophage: similar to protein in phage 186 stm2732 SWALL:Q8ZMS1 (EMBL:AE008824) (77 aa) fasta scores: E(): 0.0014, 35.52% id in 76 aa
YP_050724.1	Similar to Salmonella typhimurium fels-2 prophage: similar to e. coli retron ec67 stm2733 SWALL:Q8ZMS0 (EMBL:AE008824) (113 aa) fasta scores: E(): 4e-17, 54.05% id in 111 aa, and to Salmonella typhi hypothetical protein Sty3664 SWALL:Q8Z369 (EMBL:AL627279) (113 aa) fasta scores: E(): 6.4e-17, 54.05% id in 111 aa
YP_050725.1	Similar to Bacteriophage 186 host filamentation protein Fil SWALL:VFIL_BP186 (SWALL:P15236) (75 aa) fasta scores: E(): 5.7, 34.28% id in 35 aa, and to Salmonella typhimurium hypothetical protein Stm2735 stm2735 SWALL:Q8ZMR8 (EMBL:AE008824) (77 aa) fasta scores: E(): 1.7, 40% id in 30 aa
YP_050726.1	no significant database matches
YP_050727.1	Similar to Bacteriophage P2 regulatory protein Cox SWALL:VCOX_BPP2 (SWALL:P07695) (91 aa) fasta scores: E(): 0.0011, 33.33% id in 81 aa, and to Bacteriophage P2 Cox protein Cox SWALL:Q94MG1 (EMBL:AJ306907) (91 aa) fasta scores: E(): 0.0034, 32.09% id in 81 aa
YP_050728.1	Similar to Bacteriophage P2 repressor protein C SWALL:RPC_BPP2 (SWALL:P04132) (99 aa) fasta scores: E(): 3.7e-15, 48.48% id in 99 aa
YP_050729.1	Similar to Bacteriophage P2 integrase Int SWALL:VINT_BPP2 (SWALL:P36932) (337 aa) fasta scores: E(): 1.2e-68, 54.29% id in 326 aa
YP_050730.1	Similar to Bacillus halodurans hydantoinase bh1884 SWALL:Q9KBP1 (EMBL:AP001513) (533 aa) fasta scores: E(): 2.5e-93, 50.09% id in 519 aa, and to Enterococcus faecalis hydantoinase/oxoprolinase ef3275 SWALL:AAO82942 (EMBL:AE016957) (517 aa) fasta scores: E(): 7.4e-90, 48.55% id in 519 aa
YP_050731.1	Similar to Bacillus halodurans hypothetical protein Bh1883 SWALL:Q9KBP2 (EMBL:AP001513) (365 aa) fasta scores: E(): 7.6e-68, 49.45% id in 364 aa, and to Listeria innocua hypothetical protein Lin0474 SWALL:Q92EI5 (EMBL:AL596165) (366 aa) fasta scores: E(): 2e-64, 46.32% id in 367 aa
YP_050732.1	Similar to Escherichia coli, and Escherichia coli O6 cytosine permease CodB or b0336 or c0455 SWALL:CODB_ECOLI (SWALL:P25525) (419 aa) fasta scores: E(): 2.4e-20, 28% id in 350 aa, and to Bacillus halodurans cytosine permease bh1882 SWALL:Q9KBP3 (EMBL:AP001513) (445 aa) fasta scores: E(): 1.4e-50, 36.59% id in 429 aa
YP_050733.1	Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa
YP_050734.1	Similar to Yersinia pestis  membrane protein ypo1380 SWALL:Q8ZGC3 (EMBL:AJ414148) (382 aa) fasta scores: E(): 1.3e-102, 70.23% id in 383 aa, and to Salmonella typhimurium  mfs family transport protein ycad or stm0968 SWALL:Q8ZQD2 (EMBL:AE008741) (382 aa) fasta scores: E(): 1e-95, 64.92% id in 382 aa
YP_050735.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_050736.1	Similar to Yersinia pestis  ATPase protein ypo1378 or y2797 SWALL:Q8ZGC5 (EMBL:AJ414148) (447 aa) fasta scores: E(): 4.1e-143, 89.48% id in 447 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ycaj or b0892 or c1029 or z1238 or ecs0977 SWALL:YCAJ_ECOLI (SWALL:P45526) (447 aa) fasta scores: E(): 3.4e-139, 87.47% id in 447 aa
YP_050737.1	participates with LolB in the incorporation of lipoprotein into the outer membrane
YP_050738.1	Similar to Escherichia coli cell division protein FtsK or b0890 SWALL:FTSK_ECOLI (SWALL:P46889) (1329 aa) fasta scores: E(): 3.8e-163, 53.6% id in 1347 aa
YP_050739.1	mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system
YP_050741.1	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_050742.2	in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c
YP_050743.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_050744.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_050745.1	Similar to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SWALL:MOCR_RHIME (SWALL:P49309) (493 aa) fasta scores: E(): 3.2e-48, 36.95% id in 433 aa, and to Escherichia coli O157:H7 z3973 protein z3973 or ecs3534 SWALL:Q8X922 (EMBL:AE005496) (444 aa) fasta scores: E(): 2.4e-54, 43.8% id in 452 aa
YP_050746.1	Similar to Rhizobium loti hypothetical protein Mll1641 SWALL:Q98K47 (EMBL:AP002997) (152 aa) fasta scores: E(): 5.2e-25, 46.66% id in 150 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0269 SWALL:Q9I6M1 (EMBL:AE004465) (145 aa) fasta scores: E(): 4.4e-22, 42.36% id in 144 aa
YP_050747.1	ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates
YP_050748.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_050750.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri cold shock-like protein CspD or CspH or b0880 or c1017 or z1117 or ecs0966 or sf0840 SWALL:CSPD_ECOLI (SWALL:P24245) (74 aa) fasta scores: E(): 9.7e-25, 87.32% id in 71 aa
YP_050751.1	Similar to Yersinia pestis hypothetical protein Ypo1362 ypo1362 SWALL:Q8ZGD9 (EMBL:AJ414148) (555 aa) fasta scores: E(): 1.1e-152, 66.3% id in 555 aa, and to Escherichia coli hypothetical protein ybjd or b0876 SWALL:YBJD_ECOLI (SWALL:P75828) (552 aa) fasta scores: E(): 1.3e-148, 67.14% id in 554 aa
YP_050752.1	Similar to Yersinia pestis  membrane protein ypo1361 or y2818 SWALL:Q8ZGE0 (EMBL:AJ414147) (298 aa) fasta scores: E(): 4.1e-83, 74.16% id in 298 aa, and to Salmonella typhimurium  inner membrane protein ybje or stm0938 SWALL:Q8ZQE7 (EMBL:AE008740) (299 aa) fasta scores: E(): 4.3e-75, 67.33% id in 300 aa
YP_050753.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_050754.1	Similar to Escherichia coli NADH oxidoreductase Hcr or b0872 SWALL:HCR_ECOLI (SWALL:P75824) (322 aa) fasta scores: E(): 1.3e-46, 61.14% id in 332 aa
YP_050755.1	Similar to Yersinia pestis  membrane protein ypo1356 or y2824 SWALL:Q8ZGE5 (EMBL:AJ414147) (496 aa) fasta scores: E(): 1.8e-130, 66.52% id in 475 aa, and to Escherichia coli hypothetical protein ybjt or b0869 SWALL:YBJT_ECOLI (SWALL:P75822) (476 aa) fasta scores: E(): 1.6e-119, 60.08% id in 471 aa
YP_050756.1	Similar to Escherichia coli probable N-acetylmuramoyl-L-alanine amidase ybjr or b0867 SWALL:YBJR_ECOLI (SWALL:P75820) (276 aa) fasta scores: E(): 2.3e-62, 57.93% id in 271 aa, and to Salmonella typhi N-acetylmuramoyl-L-alanine amidase sty0927 SWALL:Q8Z834 (EMBL:AL627268) (276 aa) fasta scores: E(): 3.6e-60, 56.77% id in 273 aa
YP_050757.1	Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ybjq or stm0930 or sty0926 SWALL:YBJQ_SALTY (SWALL:Q8XGV2) (107 aa) fasta scores: E(): 7.4e-32, 84.11% id in 107 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybjq or b0866 or c0999 or z1099 or ecs0952 SWALL:YBJQ_ECOLI (SWALL:P75819) (107 aa) fasta scores: E(): 8.3e-31, 82.24% id in 107 aa
YP_050758.1	With ArtMQJI transports arginine across the inner membrane
YP_050759.1	Similar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI or b0863 SWALL:ARTI_ECOLI (SWALL:P30859) (243 aa) fasta scores: E(): 4e-67, 72.42% id in 243 aa
YP_050760.1	with ArtPMJI transports arginine across the inner membrane
YP_050761.1	with ArtPQJI acts to transport arginine across the inner membrane
YP_050762.1	Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.1e-71, 78.6% id in 243 aa
YP_050763.1	RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA
YP_050764.1	Similar to Yersinia pestis  membrane protein ypo1335 or y2846 SWALL:AAM86397 (EMBL:AJ414147) (154 aa) fasta scores: E(): 1e-23, 46.47% id in 142 aa, and to Salmonella typhimurium  inner membrane protein ybjo or stm0881 SWALL:Q8ZQJ6 (EMBL:AE008737) (157 aa) fasta scores: E(): 1.5e-20, 42.56% id in 148 aa
YP_050765.1	Similar to Escherichia coli, and Escherichia coli O6 putrescine transport system permease protein PotI or b0857 or c0990 SWALL:POTI_ECOLI (SWALL:P31136) (281 aa) fasta scores: E(): 2.8e-90, 86.12% id in 281 aa
YP_050766.1	Similar to Escherichia coli putrescine transport system permease protein PotH or b0856 SWALL:POTH_ECOLI (SWALL:P31135) (317 aa) fasta scores: E(): 5.4e-105, 82.13% id in 319 aa
YP_050767.1	part of the PotFGHI ATP-dependent putrescine transporter
YP_050768.1	Similar to Escherichia coli putrescine-binding periplasmic protein precursor PotF or b0854 SWALL:POTF_ECOLI (SWALL:P31133) (370 aa) fasta scores: E(): 2.3e-122, 80.54% id in 370 aa
YP_050769.1	Similar to Yersinia pestis hypothetical protein ypo1330 or y2853 SWALL:Q8ZGG7 (EMBL:AJ414147) (161 aa) fasta scores: E(): 1.3e-47, 77.7% id in 157 aa, and to Salmonella typhimurium  cytoplasmic protein ybjn or stm0876 SWALL:Q8ZQK1 (EMBL:AE008736) (158 aa) fasta scores: E(): 4.7e-41, 67.92% id in 159 aa
YP_050770.1	responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6
YP_050771.1	NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds
YP_050772.1	functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase
YP_050773.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ybjm or b0848 or z1075 or ecs0928 or sf0801 SWALL:AAN42434 (EMBL:AE000187) (125 aa) fasta scores: E(): 1.3e-18, 47.15% id in 123 aa, and to Salmonella typhimurium  inner membrane protein ybjm or stm0871 SWALL:Q8ZQK3 (EMBL:AE008736) (125 aa) fasta scores: E(): 7.2e-18, 46.4% id in 125 aa
YP_050774.1	Similar to Yersinia pestis hypothetical membrane protein ypo1326 or y2857 SWALL:YD26_YERPE (SWALL:Q8ZGH1) (562 aa) fasta scores: E(): 6e-189, 89.14% id in 562 aa, and to Salmonella typhimurium hypothetical membrane protein ybjl or stm0870 SWALL:YBJL_SALTY (SWALL:Q8ZQK4) (561 aa) fasta scores: E(): 9.2e-188, 88.92% id in 560 aa
YP_050775.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_050776.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 deoxyribose operon repressor DeoR or NucR or b0840 or c0925 or z1067 or ecs0920 SWALL:DEOR_ECOLI (SWALL:P06217) (252 aa) fasta scores: E(): 6.5e-55, 54.72% id in 254 aa
YP_050777.1	Similar to Escherichia coli penicillin-binding protein 6 precursor DacC or b0839 SWALL:DACC_ECOLI (SWALL:P08506) (400 aa) fasta scores: E(): 3.5e-111, 71.6% id in 398 aa
YP_050778.1	Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbc or t2348 SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 2.6e-61, 81.65% id in 218 aa, and to Salmonella enteritidis integral membrane protein sfbC SWALL:Q9S4Y9 (EMBL:AF102556) (202 aa) fasta scores: E(): 1.6e-57, 83.08% id in 201 aa
YP_050779.1	Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter ATP-binding protein sfbb or t2349 SWALL:AAO69941 (EMBL:AE016842) (338 aa) fasta scores: E(): 1.7e-84, 72.48% id in 338 aa, and to Oceanobacillus iheyensis ABC transporter ATP-binding protein ob2100 SWALL:Q8EPK1 (EMBL:AP004600) (341 aa) fasta scores: E(): 3.9e-59, 51.92% id in 337 aa
YP_050780.1	Similar to Salmonella typhi lipoprotein sfba or sty0558 SWALL:Q8Z8R6 (EMBL:AL627267) (276 aa) fasta scores: E(): 2.7e-73, 74.36% id in 277 aa, and to Oceanobacillus iheyensis lipoprotein ob2098 SWALL:BAC14054 (EMBL:AP004600) (274 aa) fasta scores: E(): 9.9e-41, 46.93% id in 277 aa
YP_050781.1	Similar to Yersinia pestis  glutathione S-transferase-family protein ypo1314 SWALL:Q8ZGI3 (EMBL:AJ414147) (206 aa) fasta scores: E(): 1.4e-53, 62.62% id in 206 aa, and to Salmonella typhimurium glutathione S-transferase ylij or stm0862 SWALL:Q8ZQL2 (EMBL:AE008736) (208 aa) fasta scores: E(): 1.6e-47, 56.73% id in 208 aa
YP_050782.1	Similar to Escherichia coli hypothetical protein ylii precursor ylii or b0837 SWALL:YLII_ECOLI (SWALL:P75804) (371 aa) fasta scores: E(): 4.8e-98, 65.19% id in 362 aa, and to Pseudomonas putida conserved hypothetical protein pp2198 SWALL:AAN67811 (EMBL:AE016782) (381 aa) fasta scores: E(): 2.7e-96, 66.13% id in 375 aa
YP_050783.1	Similar to Agrobacterium tumefaciens amine oxidase, flavin-containing atu1977 or agr_c_3599 SWALL:Q8UDY9 (EMBL:AE009150) (457 aa) fasta scores: E(): 3.3e-25, 27.16% id in 438 aa, and to Rhizobium loti hypothetical protein Mll8087 SWALL:Q984A4 (EMBL:AP003013) (448 aa) fasta scores: E(): 4.9e-26, 29.45% id in 421 aa
YP_050784.1	Similar to Yersinia pestis hypothetical protein Ypo3467 SWALL:Q8ZBE9 (EMBL:AJ414157) (147 aa) fasta scores: E(): 3.7e-20, 39.71% id in 141 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yhbp or stm3270 or sty3453 SWALL:Q8XEW3 (EMBL:AE008850) (147 aa) fasta scores: E(): 4.1e-14, 28.96% id in 145 aa
YP_050785.1	Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa
YP_050786.1	Similar to Escherichia coli, and Escherichia coli O6 malonyl CoA-acyl carrier protein transacylase FabD or TfpA or b1092 or c1361 SWALL:FABD_ECOLI (SWALL:P25715) (308 aa) fasta scores: E(): 0.069, 20.96% id in 291 aa, and to Chlorobium tepidum malonyl coa-acyl carrier protein transacylase fabd or ct2115 SWALL:Q8KAP1 (EMBL:AE012960) (305 aa) fasta scores: E(): 0.0019, 22.22% id in 288 aa
YP_050787.1	Similar to Pantoea agglomerans EhpG SWALL:AAN40896 (EMBL:AF451953) (311 aa) fasta scores: E(): 7.2e-36, 39.41% id in 274 aa, and to Streptomyces griseus Orf3 protein SWALL:Q9ZN74 (EMBL:AB022095) (456 aa) fasta scores: E(): 2.1e-22, 30.9% id in 453 aa
YP_050788.1	Similar to Pantoea agglomerans EhpF SWALL:AAN40895 (EMBL:AF451953) (366 aa) fasta scores: E(): 3.2e-61, 43.02% id in 344 aa, and to Streptomyces griseus orf2 protein SWALL:Q9ZN75 (EMBL:AB022095) (352 aa) fasta scores: E(): 8e-46, 39.88% id in 351 aa
YP_050789.1	Similar to Pseudomonas chlororaphis phenazine biosynthesis protein PhzD SWALL:PHZD_PSECL (SWALL:Q51521) (222 aa) fasta scores: E(): 1.1e-29, 38.02% id in 213 aa, and to Pantoea agglomerans EhpE SWALL:AAN40894 (EMBL:AF451953) (208 aa) fasta scores: E(): 1.8e-20, 34.95% id in 206 aa
YP_050790.1	Similar to Pseudomonas aeruginosa phenazine/pyocyanine biosynthesis protein PhzF SWALL:PHZF_PSEAE (SWALL:O69754) (278 aa) fasta scores: E(): 2.2e-56, 54.96% id in 282 aa, and to Pantoea agglomerans EhpD SWALL:AAN40893 (EMBL:AF451953) (287 aa) fasta scores: E(): 8.8e-40, 46.12% id in 258 aa
YP_050792.1	Similar to Pseudomonas aeruginosa PhzE and pa4214 SWALL:O33410 (EMBL:AF005404) (627 aa) fasta scores: E(): 1.2e-105, 45.65% id in 622 aa, and to Pantoea agglomerans EhpC SWALL:AAN40892 (EMBL:AF451953) (634 aa) fasta scores: E(): 6.8e-55, 37.82% id in 624 aa
YP_050793.1	Similar to Pseudomonas chlororaphis PhzD SWALL:Q9R9G4 (EMBL:AF195615) (207 aa) fasta scores: E(): 4.5e-38, 47.29% id in 203 aa, and to Pantoea agglomerans EhpB SWALL:AAN40891 (EMBL:AF451953) (209 aa) fasta scores: E(): 1.9e-36, 46.73% id in 199 aa
YP_050794.1	Similar to Pseudomonas aeruginosa PhzB or pa4211 SWALL:O69753 (EMBL:AF005404) (162 aa) fasta scores: E(): 2.4e-41, 64.43% id in 149 aa, and to Pantoea agglomerans EhpA SWALL:AAN40890 (EMBL:AF451953) (158 aa) fasta scores: E(): 8.9e-37, 58.5% id in 147 aa
YP_050795.1	Similar to Streptomyces aureofaciens oxygenase-like protein aur2G SWALL:Q93M01 (EMBL:AY033994) (285 aa) fasta scores: E(): 1.2e-38, 45.56% id in 259 aa, and to Rhizobium loti oxidoreductase of short-chain mlr1595 SWALL:Q98K81 (EMBL:AP002997) (279 aa) fasta scores: E(): 2.9e-44, 49.8% id in 255 aa
YP_050796.1	Similar to Pantoea agglomerans EhpR SWALL:AAN40889 (EMBL:AF451953) (129 aa) fasta scores: E(): 1.9e-06, 31.96% id in 122 aa, and to Rhizobium loti hypothetical protein Mll3207 SWALL:Q98GR5 (EMBL:AP003001) (131 aa) fasta scores: E(): 1.3e-16, 45.29% id in 117 aa
YP_050799.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_050800.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sana protein SanA or b2144 or c2677 or z3399 or ecs3036 or sf2229 SWALL:SANA_ECOLI (SWALL:P33017) (239 aa) fasta scores: E(): 4.2e-73, 80.75% id in 239 aa
YP_050801.1	Similar to Yersinia pestis  exported protein ypo1506 SWALL:Q8ZG14 (EMBL:AJ414148) (388 aa) fasta scores: E(): 3.3e-95, 61.62% id in 370 aa, and to Escherichia coli hypothetical protein yeib or b2152 SWALL:YEIB_ECOLI (SWALL:P25747) (385 aa) fasta scores: E(): 5.9e-88, 59.45% id in 370 aa
YP_050802.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_050803.1	Similar to Salmonella typhimurium  methyl-accepting chemotaxis protein stm3152 SWALL:Q8ZM14 (EMBL:AE008845) (547 aa) fasta scores: E(): 2.1e-79, 47.61% id in 565 aa, and to Yersinia pestis methyl-accepting chemotaxis protein CheD or ypo1675 or Tsr or y1837 SWALL:Q8ZFM2 (EMBL:AJ414149) (557 aa) fasta scores: E(): 1.5e-65, 44.12% id in 562 aa
YP_050804.1	Similar to Yersinia pestis  LysR-family transcriptional regulatory protein ypo1503 or y2666 SWALL:AAM86219 (EMBL:AJ414148) (289 aa) fasta scores: E(): 1.1e-90, 79.93% id in 284 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp3152 SWALL:AAN68760 (EMBL:AE016785) (288 aa) fasta scores: E(): 1.2e-58, 53.12% id in 288 aa
YP_050805.1	Similar to Escherichia coli alcohol dehydrogenase class III AdhC or b0356 SWALL:ADH3_ECOLI (SWALL:P25437) (369 aa) fasta scores: E(): 1.7e-102, 70.46% id in 369 aa, and to Yersinia pestis alcohol dehydrogenase class III, formaldehyde dehydrogenase adhc or y2667 SWALL:AAM86220 (EMBL:AE013869) (379 aa) fasta scores: E(): 2.3e-130, 91.93% id in 372 aa
YP_050806.1	Similar to Yersinia pestis  esterase ypo1501 or y2668 SWALL:Q8ZG19 (EMBL:AJ414148) (280 aa) fasta scores: E(): 5.2e-93, 78.77% id in 278 aa, and to Salmonella typhi esterase sty2428 SWALL:Q8Z5A1 (EMBL:AL627273) (285 aa) fasta scores: E(): 1.3e-88, 74.55% id in 279 aa
YP_050807.1	Similar to Schizosaccharomyces pombe glutathione S-transferase III gst3 or spac688.04C SWALL:GTH3_SCHPO (SWALL:Q9P6M1) (242 aa) fasta scores: E(): 1.8e-23, 38.57% id in 210 aa, and to Xanthomonas axonopodis glutathione S-transferase GstA or xac2394 SWALL:Q8PJY3 (EMBL:AE011876) (232 aa) fasta scores: E(): 3.5e-41, 50.68% id in 219 aa
YP_050808.1	Similar to Yersinia pestis hypothetical protein ypo2434 or y1902 SWALL:Q8ZDW4 (EMBL:AJ414152) (70 aa) fasta scores: E(): 8.1e-05, 34.37% id in 64 aa, and to Caulobacter crescentus hypothetical protein Cc0128 SWALL:Q9ABU2 (EMBL:AE005687) (66 aa) fasta scores: E(): 0.0025, 31.25% id in 64 aa
YP_050809.1	member of the iron-containing alcohol dehydrogenase family; unknown function
YP_050810.1	Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein rbsa or atu2819 or agr_c_5112 SWALL:Q8UBN2 (EMBL:AE009229) (521 aa) fasta scores: E(): 7.1e-69, 41.66% id in 492 aa, and to Yersinia pestis  sugar transport ATP-binding protein MglA or ypo0958 or y3345 SWALL:AAM86895 (EMBL:AJ414145) (499 aa) fasta scores: E(): 2.4e-67, 41.21% id in 495 aa
YP_050811.1	Similar to Yersinia pestis ribose transport system, permease protein ypo1553 or y2615 SWALL:AAM86169 (EMBL:AJ414149) (331 aa) fasta scores: E(): 2.4e-101, 87.31% id in 331 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein rbsc or atu4322 or agr_l_1078 SWALL:Q8U7X7 (EMBL:AE009360) (327 aa) fasta scores: E(): 1.8e-31, 34.45% id in 328 aa
YP_050812.1	Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor
YP_050813.1	Similar to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 9.1e-29, 35.05% id in 716 aa, and to Escherichia coli exogenous ferric siderophore receptor R4 SWALL:O87518 (EMBL:AF081285) (669 aa) fasta scores: E(): 2e-148, 55.45% id in 678 aa, and to Campylobacter coli ferric receptor CfrA cfrA SWALL:O07651 (EMBL:U80812) (696 aa) fasta scores: E(): 2.3e-77, 37.83% id in 703 aa
YP_050814.1	Similar to Escherichia coli lysine-specific permease LysP or CadR or b2156 SWALL:LYSP_ECOLI (SWALL:P25737) (488 aa) fasta scores: E(): 1.2e-162, 84.64% id in 482 aa
YP_050815.1	Similar to Yersinia enterocolitica RscR SWALL:Q93DC5 (EMBL:AF394928) (290 aa) fasta scores: E(): 4.4e-91, 78.62% id in 290 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator yeie or b2157 or c2692 or z3414 or ecs3049 SWALL:YEIE_ECOLI (SWALL:P32484) (293 aa) fasta scores: E(): 1.1e-90, 76.57% id in 286 aa
YP_050816.1	Similar to Yersinia pestis  membrane protein ypo1307 SWALL:Q8ZGJ0 (EMBL:AJ414147) (362 aa) fasta scores: E(): 4.1e-76, 59.46% id in 338 aa, and to Salmonella typhi  membrane protein sty2437 SWALL:Q8Z594 (EMBL:AL627273) (349 aa) fasta scores: E(): 2.6e-69, 57.69% id in 338 aa
YP_050817.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_050818.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_050819.1	converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers
YP_050820.1	phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr
YP_050821.1	Similar to Erwinia chrysanthemi sugar efflux transporter A SotA SWALL:SOTA_ERWCH (SWALL:Q9S3K0) (393 aa) fasta scores: E(): 3.9e-125, 80.72% id in 389 aa, and to Escherichia coli sugar efflux transporter B SetB or b2170 SWALL:SETB_ECOLI (SWALL:P33026) (393 aa) fasta scores: E(): 2.7e-116, 71.97% id in 389 aa
YP_050822.1	Similar to Yersinia pestis hypothetical protein ypo1286 or y2898 SWALL:Q8ZGK5 (EMBL:AJ414147) (84 aa) fasta scores: E(): 7.1e-22, 66.66% id in 84 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yeiw or b2170.1 or c2707 SWALL:YEIW_ECOLI (SWALL:P58039) (84 aa) fasta scores: E(): 1.7e-20, 64.28% id in 84 aa
YP_050823.1	Stimulates the peptidyltransferase activity of the 70S ribosome and enhances dipeptide synthesis with N-formylmethionyl-tRNA and puromycin in vitro, suggesting its involvement in the formation of the first peptide bond of a protein
YP_050824.1	Similar to Yersinia pestis  cobalamin synthesis protein ypo1277 or y2906 SWALL:AAM86457 (EMBL:AJ414147) (327 aa) fasta scores: E(): 9.2e-90, 70.6% id in 330 aa, and to Salmonella typhimurium, and Salmonella typhi cobalamin synthesis protein yeir or stm2212 or sty2448 SWALL:Q8XFI7 (EMBL:AE008799) (328 aa) fasta scores: E(): 9.7e-83, 66.26% id in 329 aa
YP_050825.1	Similar to Yersinia pestis  membrane protein ypo1276 or y2907 SWALL:AAM86458 (EMBL:AJ414147) (233 aa) fasta scores: E(): 2.3e-66, 71.05% id in 228 aa, and to Salmonella typhimurium  permease yeiu or stm2213 SWALL:Q8ZNK2 (EMBL:AE008799) (239 aa) fasta scores: E(): 1.3e-59, 66.22% id in 225 aa
YP_050826.1	by similarity, Spr seems to have peptidase activity; involved in thermoresistance
YP_050827.1	Similar to Yersinia pestis  substrate-binding transport protein ypo1273 or y2910 SWALL:Q8ZGL6 (EMBL:AJ414147) (602 aa) fasta scores: E(): 1.5e-180, 69.6% id in 602 aa, and to Salmonella typhi  transport system periplasmic binding protein sty2452 SWALL:Q8Z585 (EMBL:AL627273) (601 aa) fasta scores: E(): 4.8e-162, 62.29% id in 602 aa
YP_050828.1	Similar to Yersinia pestis  ABC transporter integral membrane subunit ypo1272 or y2911 SWALL:AAM86462 (EMBL:AJ414147) (366 aa) fasta scores: E(): 6.5e-118, 83.92% id in 367 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter permease protein yejb yejb or b2178 or z3437 or ecs3070 SWALL:YEJB_ECOLI (SWALL:P33914) (364 aa) fasta scores: E(): 6.4e-113, 81.09% id in 365 aa
YP_050829.1	Similar to Yersinia pestis  ABC transporter integral membrane subunit ypo1271 or y2912 SWALL:AAM86463 (EMBL:AJ414147) (342 aa) fasta scores: E(): 3.5e-106, 76.83% id in 341 aa, and to Escherichia coli hypothetical ABC transporter permease protein yeje or b2179 SWALL:YEJE_ECOLI (SWALL:P33915) (341 aa) fasta scores: E(): 6.2e-105, 75.58% id in 340 aa
YP_050830.1	Similar to Yersinia pestis  ABC transporter ATP-binding subunit ypo1270 SWALL:Q8ZGL9 (EMBL:AJ414147) (530 aa) fasta scores: E(): 1.2e-144, 74.85% id in 529 aa, and to Salmonella typhi  ABC-transporter ATP-binding protein sty2455 SWALL:Q8Z583 (EMBL:AL627273) (529 aa) fasta scores: E(): 8.4e-139, 72.15% id in 528 aa
YP_050831.1	Similar to Yersinia pestis hypothetical protein ypo1269 or y2914 SWALL:AAM86465 (EMBL:AJ414147) (114 aa) fasta scores: E(): 5e-30, 63.15% id in 114 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yejg or b2181 or c2718 or sf2268 SWALL:YEJG_ECOLI (SWALL:P33917) (114 aa) fasta scores: E(): 1.4e-27, 62.28% id in 114 aa
YP_050832.1	Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance
YP_050833.1	catalyzes the synthesis pseudouridine from uracil-516 in 16S ribosomal RNA
YP_050834.1	Similar to Escherichia coli hypothetical protein yech or b1906 SWALL:YECH_ECOLI (SWALL:P46887) (79 aa) fasta scores: E(): 5.8e-18, 62.02% id in 79 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yech or stm1936 or sty2144 SWALL:Q8XGI3 (EMBL:AE008786) (79 aa) fasta scores: E(): 1.1e-16, 59.49% id in 79 aa
YP_050835.1	Similar to Yersinia pestis  dead box helicase family protein ypo1265 or y2919 SWALL:AAM86469 (EMBL:AJ414147) (585 aa) fasta scores: E(): 6.6e-185, 80.3% id in 584 aa, and to Salmonella typhimurium, and Salmonella typhi  ATP-dependent helicase yejh or stm2223 or sty2460 SWALL:Q8XGB8 (EMBL:AE008799) (586 aa) fasta scores: E(): 2.5e-180, 77.81% id in 586 aa
YP_050836.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_050837.1	Similar to Pseudomonas putida membrane protein, pp2419 SWALL:AAN68031 (EMBL:AE016783) (421 aa) fasta scores: E(): 2.1e-92, 61.37% id in 378 aa, and to Ralstonia solanacearum hypothetical protein rsc2728 or rs00126 SWALL:Q8XVU9 (EMBL:AL646071) (382 aa) fasta scores: E(): 2.9e-71, 49.86% id in 377 aa
YP_050838.1	Similar to Escherichia coli 37 kDa nucleoid-associated protein yejk or b2186 SWALL:NA37_ECOLI (SWALL:P33920) (334 aa) fasta scores: E(): 2.6e-104, 80.53% id in 334 aa
YP_050839.1	Similar to Yersinia pestis hypothetical protein Ypo1261 SWALL:Q8ZGM6 (EMBL:AJ414147) (75 aa) fasta scores: E(): 4.5e-22, 85.52% id in 76 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yejl or stm2227 or sty2465 SWALL:Q8XEL6 (EMBL:AE008799) (75 aa) fasta scores: E(): 1.6e-19, 78.94% id in 76 aa
YP_050840.1	Similar to Salmonella typhi  sulphatase sty2466 SWALL:Q8Z579 (EMBL:AL627273) (586 aa) fasta scores: E(): 5.5e-146, 60.47% id in 587 aa, and to Shigella flexneri sulfatase yejm or sf2275 SWALL:AAN43794 (EMBL:AE015243) (586 aa) fasta scores: E(): 3.6e-143, 59.11% id in 587 aa
YP_050841.1	Similar to Escherichia coli prophage cp4-57 integrase inta or slpa or intx or b2622 SWALL:INTA_ECOLI (SWALL:P32053) (413 aa) fasta scores: E(): 1e-90, 58.56% id in 403 aa
YP_050843.1	Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SWALL:Y9K_BPP4 (SWALL:P12552) (88 aa) fasta scores: E(): 0.034, 41.86% id in 43 aa, and to Pseudomonas aeruginosa phage-related protein SWALL:Q8GPP9 (EMBL:AF440524) (72 aa) fasta scores: E(): 0.0038, 31.66% id in 60 aa
YP_050844.1	Its C-terminal region is similar to Yersinia pestis prophage protein ypo1091 or y3086 SWALL:Q8ZH22 (EMBL:AJ414146) (180 aa) fasta scores: E(): 1.7e-06, 52.83% id in 53 aa
YP_050845.1	Similar to Escherichia coli O157:H7 alpha replication protein of prophage cp-933i z0339 or ecs0303 SWALL:Q8X7I5 (EMBL:AE005204) (796 aa) fasta scores: E(): 1.3e-10, 28.27% id in 633 aa, and to Pasteurella multocida hypothetical protein Pm1782 SWALL:Q9CK52 (EMBL:AE006215) (725 aa) fasta scores: E(): 9.7e-95, 45.25% id in 590 aa, and to Bacteriophage P4 DNA primase SWALL:Q8LTT9 (EMBL:AF509493) (362 aa) fasta scores: E(): 2.3e-41, 47.26% id in 347 aa
YP_050848.1	Similar to Agrobacterium tumefaciens hypothetical protein atu1783 or agr_c_3279 SWALL:Q8UEH4 (EMBL:AE009134) (122 aa) fasta scores: E(): 4e-09, 46.83% id in 79 aa, and to Rhizobium loti hypothetical protein Msr2423 SWALL:Q98IF7 (EMBL:AP002999) (81 aa) fasta scores: E(): 1.1e-08, 45.2% id in 73 aa
YP_050849.1	Similar to Rhizobium sp. hypothetical 11.0 kDa protein Y4kP SWALL:Y4KP_RHISN (SWALL:P55534) (96 aa) fasta scores: E(): 4.6e-10, 43.82% id in 89 aa, and to Agrobacterium tumefaciens hypothetical protein atu1782 or agr_c_3278 SWALL:Q8UEH5 (EMBL:AE009134) (96 aa) fasta scores: E(): 4.5e-09, 42.22% id in 90 aa
YP_050851.1	Similar to Ralstonia solanacearum hypothetical protein rsc1958 or rs03532 SWALL:Q8XY05 (EMBL:AL646067) (113 aa) fasta scores: E(): 8.8e-34, 72.56% id in 113 aa, and to Bradyrhizobium japonicum Bll3987 protein Bll3987 SWALL:BAC49252 (EMBL:AP005949) (110 aa) fasta scores: E(): 3.7e-26, 58.18% id in 110 aa
YP_050852.1	Similar to Escherichia coli hypothetical protein ygap or b2668 SWALL:YGAP_ECOLI (SWALL:P55734) (174 aa) fasta scores: E(): 3.5e-33, 57.48% id in 167 aa, and to Salmonella typhi hypothetical protein Sty2918 SWALL:Q8Z4F4 (EMBL:AL627276) (175 aa) fasta scores: E(): 2.9e-30, 52.69% id in 167 aa
YP_050853.1	Similar to Yersinia pestis  sugar transporter ypo1571 or y2593 SWALL:Q8ZFV6 (EMBL:AJ414149) (476 aa) fasta scores: E(): 5.3e-144, 75.37% id in 463 aa, and to Salmonella typhi  inner membrane protein sty2216 SWALL:Q8Z5P2 (EMBL:AL627273) (485 aa) fasta scores: E(): 2.7e-124, 67.25% id in 455 aa
YP_050854.1	Similar to Escherichia coli cyanate transport protein CynX or b0341 SWALL:CYNX_ECOLI (SWALL:P17583) (384 aa) fasta scores: E(): 5.1e-43, 35.35% id in 379 aa, and to Pseudomonas indigofera IgiE SWALL:Q9RBX3 (EMBL:AF088856) (408 aa) fasta scores: E(): 8.8e-56, 43.65% id in 378 aa
YP_050855.1	OmpX; involved in cell adhesion; forms an eight-stranded antiparallel beta-barrel that protrudes from the cell surface; mutations in the gene increase cell-surface contact in fimbriated strains but decrease contact in nonfimbriated strains
YP_050856.1	Similar to Yersinia pestis  membrane protein ypo2507 or y1680 SWALL:AAM85249 (EMBL:AJ414152) (295 aa) fasta scores: E(): 8.1e-81, 73.92% id in 280 aa, and to Salmonella typhimurium hypothetical transport protein ybif or stm0832 SWALL:YBIF_SALTY (SWALL:P74867) (295 aa) fasta scores: E(): 8.1e-74, 71.53% id in 274 aa
YP_050857.1	Similar to Vibrio vulnificus adenylate kinase vv12472 SWALL:AAO10836 (EMBL:AE016805) (177 aa) fasta scores: E(): 9.2e-37, 55.42% id in 175 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4799 SWALL:Q9HV10 (EMBL:AE004893) (192 aa) fasta scores: E(): 4.4e-17, 32.92% id in 164 aa
YP_050858.1	binds DNA in a non-sequence-specific manner and is abundant during stationary phase; forms a DNA-protein crystal that protects DNA from damage; required for normal starvation response and long-term stationary viability; forms a homododecameric complex and sequesters iron which provides protection against oxidative damage
YP_050859.1	similar to periplasmic-binding component of ABC transporters
YP_050860.1	similar to permease component of ABC transporters; mutations impair ability of Escherichia coli to transport and utilize glutamine
YP_050861.1	similar to ATP-binding component of ABC transporters
YP_050862.1	Similar to Vibrio cholerae peptidase,  vc1983 SWALL:Q9KQL5 (EMBL:AE004273) (615 aa) fasta scores: E(): 4.1e-135, 56.13% id in 611 aa, and to Vibrio vulnificus oligoendopeptidase F vv21400 SWALL:AAO08281 (EMBL:AE016813) (615 aa) fasta scores: E(): 1.7e-132, 53.34% id in 613 aa
YP_050863.1	Similar to Escherichia coli hypothetical protein ybib or b0800 SWALL:YBIB_ECOLI (SWALL:P30177) (320 aa) fasta scores: E(): 8.8e-82, 63.95% id in 319 aa, and to Yersinia pestis  glycosyl transferase ypo2522 or y1665 SWALL:Q8ZDN8 (EMBL:AJ414152) (319 aa) fasta scores: E(): 3.3e-79, 66.03% id in 318 aa
YP_050864.1	Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa
YP_050865.1	Similar to Salmonella typhimurium  cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 2.6e-10, 54.68% id in 64 aa, and to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 6.4e-10, 64.58% id in 48 aa
YP_050866.1	Similar to Salmonella typhi hypothetical protein Sty1623 SWALL:Q8Z6U3 (EMBL:AL627270) (154 aa) fasta scores: E(): 3e-18, 41.09% id in 146 aa, and to Salmonella typhimurium  cytoplasmic protein stm4215 SWALL:Q8ZKJ0 (EMBL:AE008897) (151 aa) fasta scores: E(): 8.9e-12, 43.24% id in 111 aa
YP_050867.1	Similar to Salmonella typhi hypothetical protein Sty1613 SWALL:Q8Z6V3 (EMBL:AL627270) (103 aa) fasta scores: E(): 9.4e-20, 59.4% id in 101 aa
YP_050868.1	Similar to Salmonella typhimurium  inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 5e-27, 69.15% id in 107 aa, and to Salmonella typhi  membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 5.4e-22, 60.18% id in 108 aa
YP_050869.1	Similar to Salmonella typhi  lipoprotein sty1611 SWALL:Q8Z6V5 (EMBL:AL627270) (216 aa) fasta scores: E(): 2.4e-21, 43.13% id in 204 aa
YP_050870.1	Similar to Salmonella typhimurium  soluble lytic murein transglycosylase stm4217 SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E(): 9.4e-53, 62.87% id in 202 aa
YP_050871.1	Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 6.3e-27, 66.03% id in 106 aa, and to Salmonella typhimurium  inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.9e-12, 52.29% id in 109 aa
YP_050872.1	Similar to Erwinia chrysanthemi proteases secretion protein PrtF precursor SWALL:PRTF_ERWCH (SWALL:P23598) (462 aa) fasta scores: E(): 3.6e-123, 73.25% id in 445 aa. Also similar to ECA1534 (48.956% in 431 aa overlap
YP_050873.1	Similar to Erwinia chrysanthemi proteases secretion protein PrtE SWALL:PRTE_ERWCH (SWALL:P23597) (448 aa) fasta scores: E(): 9.7e-110, 72.33% id in 441 aa. Also similar to ECA1535 (47.529% in 425 aa overlap
YP_050874.1	Similar to Erwinia chrysanthemi proteases secretion ATP-binding protein PrtD SWALL:PRTD_ERWCH (SWALL:P23596) (575 aa) fasta scores: E(): 1.2e-155, 74.6% id in 575 aa. Also similar to ECA1536 (58.719% in 562 aa overlap
YP_050875.1	Similar to Pectobacterium carotovorum subsp. carotovorum protease inhibitor Inh SWALL:Q9RB19 (EMBL:AF141295) (103 aa) fasta scores: E(): 4.8e-37, 89.32% id in 103 aa, and to Erwinia chrysanthemi proteinase inhibitor precursor Inh SWALL:INH_ERWCH (SWALL:P18958) (120 aa) fasta scores: E(): 7.6e-21, 57.28% id in 103 aa
YP_050876.1	Similar to Pectobacterium carotovorum subsp. carotovorum metalloprotease PrtW SWALL:Q9RB20 (EMBL:AF141295) (473 aa) fasta scores: E(): 4.7e-142, 84.51% id in 478 aa, and to Erwinia chrysanthemi secreted protease C precursor PrtC SWALL:PRTX_ERWCH (SWALL:P19144) (478 aa) fasta scores: E(): 5.8e-116, 66.03% id in 471 aa
YP_050877.1	helicase involved in DNA repair and perhaps also replication
YP_050878.1	Similar to Pseudomonas putida transcriptional regulator, AraC family pp3022 SWALL:AAN68630 (EMBL:AE016785) (269 aa) fasta scores: E(): 5.3e-24, 35.03% id in 274 aa, and to Rhizobium meliloti transcription regulator protein r01128 or smc00558 SWALL:Q92R06 (EMBL:AL591786) (285 aa) fasta scores: E(): 1.2e-17, 29.65% id in 263 aa
YP_050879.1	Similar to Escherichia coli, and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 2.5e-13, 32.05% id in 209 aa, and to Pseudomonas putida transporter, LysE family pp3021 SWALL:AAN68629 (EMBL:AE016785) (204 aa) fasta scores: E(): 8.9e-26, 42.71% id in 199 aa
YP_050880.1	Similar to Escherichia coli isopentenyl-diphosphate delta-isomerase Idi or b2889 SWALL:IDI_ECOLI (SWALL:Q46822) (182 aa) fasta scores: E(): 2.5e-13, 33.12% id in 163 aa, and to Streptomyces coelicolor probable isopentenyl-diphosphate delta-isomerase idi or sco6750 or sc5f2a.33C SWALL:IDI_STRCO (SWALL:Q9X7Q6) (197 aa) fasta scores: E(): 9.6e-20, 42.58% id in 155 aa
YP_050881.1	Similar to Escherichia coli periplasmic beta-glucosidase precursor BglX or b2132 SWALL:BGLX_ECOLI (SWALL:P33363) (765 aa) fasta scores: E(): 3.4e-216, 73.3% id in 768 aa, and to Salmonella typhimurium periplasmic beta-glucosidase precursor BglX or stm2166 SWALL:BGLX_SALTY (SWALL:Q56078) (765 aa) fasta scores: E(): 3.9e-217, 73.17% id in 768 aa
YP_050882.1	Similar to Erwinia chrysanthemi hypothetical protein SWALL:Q8KKB6 (EMBL:AF503595) (205 aa) fasta scores: E(): 1.4e-53, 72.22% id in 180 aa, and to Agrobacterium tumefaciens glutathione S-transferase atu1394 or agr_c_2575 SWALL:Q8UFK3 (EMBL:AE009100) (254 aa) fasta scores: E(): 3.8e-56, 58.77% id in 228 aa
YP_050883.1	specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7
YP_050884.1	Similar to Ralstonia solanacearum probable transmembrane protein rsp1154 or rs05433 SWALL:Q8XQR7 (EMBL:AL646083) (164 aa) fasta scores: E(): 5.6e-06, 30.76% id in 169 aa
YP_050885.1	Similar to Thermoanaerobacter tengcongensis major membrane immunogen tte2480 SWALL:Q8R7D5 (EMBL:AE013189) (138 aa) fasta scores: E(): 0.61, 35% id in 140 aa, and to Clostridium acetobutylicum uncharacterized conserved protein cac2767 SWALL:Q97FH2 (EMBL:AE007774) (133 aa) fasta scores: E(): 0.0033, 31.86% id in 91 aa
YP_050886.1	Similar to Aeromonas hydrophila adenylate cyclase CyaB SWALL:O69199 (EMBL:AJ223730) (191 aa) fasta scores: E(): 1.8e-29, 46.55% id in 174 aa, and to Yersinia pestis adenylate cyclase 2 CyaB or ypo1178 or y3011 SWALL:Q8ZGU9 (EMBL:AJ414146) (179 aa) fasta scores: E(): 5.7e-34, 52.51% id in 179 aa
YP_050888.1	converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines
YP_050889.1	Similar to Escherichia coli probable S-methylmethionine permease MmuP or b0260 SWALL:MMUP_ECOLI (SWALL:Q47689) (467 aa) fasta scores: E(): 1.6e-153, 83.59% id in 445 aa
YP_050890.1	Similar to Escherichia coli hypothetical protein yohi yohi or b2140 SWALL:YOHI_ECOLI (SWALL:P33371) (315 aa) fasta scores: E(): 2.9e-108, 85.34% id in 307 aa, and to Yersinia pestis hypothetical protein ypo1175 ypo1175 or y3015 SWALL:Q8ZGV2 (EMBL:AJ414146) (314 aa) fasta scores: E(): 1.2e-107, 87.62% id in 307 aa
YP_050891.1	Similar to Xylella fastidiosa hypothetical protein Xf2273 SWALL:Q9PB71 (EMBL:AE004039) (236 aa) fasta scores: E(): 4.2e-73, 76.52% id in 213 aa, and to Xanthomonas axonopodis hypothetical protein Xac0332 SWALL:Q8PQJ1 (EMBL:AE011659) (218 aa) fasta scores: E(): 1.2e-72, 74.88% id in 215 aa
YP_050892.1	Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SWALL:DPPA_ECOLI (SWALL:P23847) (535 aa) fasta scores: E(): 9.4e-154, 66.66% id in 531 aa
YP_050893.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_050894.1	Similar to Yersinia enterocolitica hypothetical 17.2 kDa protein SWALL:Q9F4G8 (EMBL:AY008264) (152 aa) fasta scores: E(): 1e-21, 40.13% id in 152 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:BAC41696 (EMBL:AB088420) (145 aa) fasta scores: E(): 4.7e-11, 36.77% id in 155 aa
YP_050895.1	Similar to Yersinia enterocolitica hypothetical 16.3 kDa protein SWALL:Q9F4G7 (EMBL:AY008264) (148 aa) fasta scores: E(): 2.5e-16, 40.14% id in 142 aa, and to Yersinia pestis hypothetical protein ypo2345 or y1987 SWALL:Q8ZE40 (EMBL:AJ414152) (148 aa) fasta scores: E(): 1.3e-15, 38.84% id in 139 aa
YP_050896.1	this helicase is not essential cell growth
YP_050897.1	Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa
YP_050898.1	Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrC SWALL:CBRC_ERWCH (SWALL:Q47086) (349 aa) fasta scores: E(): 4.9e-69, 61.91% id in 344 aa
YP_050899.1	Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrB SWALL:CBRB_ERWCH (SWALL:Q47085) (340 aa) fasta scores: E(): 8.6e-66, 58.15% id in 325 aa
YP_050900.1	Similar to Erwinia chrysanthemi achromobactin-binding periplasmic protein precursor CbrA SWALL:CBRA_ERWCH (SWALL:Q47084) (305 aa) fasta scores: E(): 1.5e-62, 63.74% id in 262 aa
YP_050901.1	Similar to Erwinia chrysanthemi Acr SWALL:Q93AT9 (EMBL:AF416740) (482 aa) fasta scores: E(): 2.5e-108, 57.76% id in 483 aa
YP_050903.1	Similar to Yersinia pestis  membrane protein ypo1163 or y3018 SWALL:Q8ZGW1 (EMBL:AJ414146) (236 aa) fasta scores: E(): 7.9e-73, 86.01% id in 236 aa, and to Salmonella typhimurium  permease ybhl or stm0807 SWALL:Q8ZQP9 (EMBL:AE008733) (234 aa) fasta scores: E(): 1.7e-70, 83.4% id in 235 aa
YP_050904.1	catalyzes the conversion of molybdopterin precursor Z into molybdopterin
YP_050905.1	catalyzes the conversion of molybdopterin precursor Z into molybdopterin
YP_050906.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_050907.1	Similar to Escherichia coli, and Escherichia coli O157:H7 molybdenum cofactor biosynthesis protein B MoaB or ChlA2 or b0782 or z1001 or ecs0860 SWALL:MOAB_ECOLI (SWALL:P30746) (169 aa) fasta scores: E(): 4.2e-45, 70.41% id in 169 aa
YP_050908.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_050909.1	Similar to Salmonella typhimurium hypothetical upf0052 protein ybhk or stm0801 SWALL:YBHK_SALTY (SWALL:P58586) (302 aa) fasta scores: E(): 1.5e-88, 79.47% id in 302 aa, and to Escherichia coli O6 hypothetical protein ybhk or c0861 SWALL:Q8FJP7 (EMBL:AE016757) (322 aa) fasta scores: E(): 2.7e-87, 78.8% id in 302 aa
YP_050910.1	Weakly similar to Bacillus subtilis hypothetical protein YsfE SWALL:P94533 (EMBL:Z75208) (80 aa) fasta scores: E(): 0.92, 30% id in 60 aa
YP_050911.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_050912.1	Doubtful CDS. No significant database matches
YP_050913.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_050914.1	Similar to Escherichia coli biotin synthesis protein BioC or b0777 SWALL:BIOC_ECOLI (SWALL:P12999) (251 aa) fasta scores: E(): 2e-48, 54.8% id in 250 aa, and to Erwinia herbicola biotin synthesis protein BioC SWALL:BIOC_ERWHE (SWALL:O06898) (251 aa) fasta scores: E(): 1.1e-43, 52.22% id in 247 aa
YP_050915.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_050916.1	Similar to Escherichia coli biotin synthase BioB or b0775 SWALL:BIOB_ECOLI (SWALL:P12996) (346 aa) fasta scores: E(): 1.5e-117, 83.72% id in 344 aa, and to Erwinia herbicola biotin synthase BioB SWALL:BIOB_ERWHE (SWALL:Q47862) (346 aa) fasta scores: E(): 6.2e-119, 84.88% id in 344 aa
YP_050917.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_050918.1	Similar to Pectobacterium carotovorum subsp. carotovorum beta(1,4)-glucan glucanohydrolase CelB SWALL:O31030 (EMBL:AF025769) (264 aa) fasta scores: E(): 1.1e-97, 91.66% id in 264 aa, and to Erwinia carotovora endoglucanase S precursor CelS SWALL:GUNS_ERWCA (SWALL:P16630) (264 aa) fasta scores: E(): 1.9e-93, 85.6% id in 264 aa
YP_050919.1	Similar to Yersinia pestis  membrane protein ypo1514 SWALL:Q8ZG06 (EMBL:AJ414148) (135 aa) fasta scores: E(): 5.1e-33, 66.15% id in 130 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yohj or b2141 or c2673 or sf2226 SWALL:YOHJ_ECOLI (SWALL:P33372) (132 aa) fasta scores: E(): 4.3e-32, 64.84% id in 128 aa
YP_050920.1	Similar to Salmonella typhimurium, and Salmonella typhi  transmembrane protein yohk or stm2182 or sty2412 SWALL:Q8XGP7 (EMBL:AE008797) (231 aa) fasta scores: E(): 2.5e-65, 80.17% id in 227 aa, and to Yersinia pestis membrane protein ypo1513 or y2655 SWALL:Q8ZG07 (EMBL:AJ414148) (231 aa) fasta scores: E(): 1e-63, 76.62% id in 231 aa
YP_050921.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_050922.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_050923.1	Similar to Salmonella typhimurium, and Salmonella typhi  ABC transporter inner membrane component ylid or stm0851 or sty0890 SWALL:Q8XF88 (EMBL:AE008735) (303 aa) fasta scores: E(): 9.7e-95, 79.19% id in 298 aa, and to Shigella flexneri  transport system permease protein ylid or sf0781.1 SWALL:AAN42416 (EMBL:AE015107) (303 aa) fasta scores: E(): 1.3e-94, 78.18% id in 298 aa
YP_050924.1	Similar to Escherichia coli hypothetical ABC transporter permease protein ylic or b0831 SWALL:YLIC_ECOLI (SWALL:P75798) (306 aa) fasta scores: E(): 5.7e-103, 84.96% id in 306 aa, and to Salmonella typhi hypothetical ABC transporter permease protein ylic or sty0889 SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 1.2e-102, 84.96% id in 306 aa
YP_050925.1	Similar to Salmonella typhimurium  ABC transporter periplasmic binding protein ylib or stm0849 SWALL:Q8ZQM3 (EMBL:AE008735) (512 aa) fasta scores: E(): 1.1e-154, 75.93% id in 507 aa, and to Escherichia coli  binding protein ylib precursor ylib or b0830 SWALL:YLIB_ECOLI (SWALL:P75797) (512 aa) fasta scores: E(): 1.6e-153, 76.33% id in 507 aa
YP_050926.1	Similar to Ralstonia solanacearum probable ATP-binding ABC transporter protein rsc1379 or rs04662 SWALL:Q8XZL6 (EMBL:AL646064) (627 aa) fasta scores: E(): 2.8e-161, 72.28% id in 617 aa, and to Salmonella typhimurium  ATPase components of ABC-type transport system, contain duplicated atpase domain ylia or stm0848 SWALL:Q8ZQM4 (EMBL:AE008735) (623 aa) fasta scores: E(): 4.3e-153, 70.18% id in 607 aa
YP_050927.1	is involved in the formation of active molybdenum cofactor and the chelation of molybdenum
YP_050928.1	ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase
YP_050929.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa2575 SWALL:Q9I0R1 (EMBL:AE004686) (200 aa) fasta scores: E(): 8.3e-53, 66.16% id in 198 aa, and to Listeria innocua hypothetical protein Lin2962 SWALL:Q926S9 (EMBL:AL596174) (199 aa) fasta scores: E(): 2.7e-48, 64.82% id in 199 aa
YP_050930.1	similar to YegS from E. coli
YP_050931.1	Similar to Shewanella oneidensis GGDEF domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2e-99, 51.03% id in 482 aa, and to Vibrio cholerae GGDEF family protein vc2224 SWALL:Q9KPY8 (EMBL:AE004294) (512 aa) fasta scores: E(): 2.3e-83, 45.97% id in 485 aa
YP_050932.1	Similar to Pseudomonas putida transcriptional regulator, GntR family pp2066 SWALL:AAN67680 (EMBL:AE016781) (254 aa) fasta scores: E(): 1.5e-32, 40.83% id in 240 aa, and to Streptomyces coelicolor GntR-family transcriptional regulator sco5231 or sc7e4.28C SWALL:Q9K492 (EMBL:AL939123) (254 aa) fasta scores: E(): 8.3e-10, 31.53% id in 241 aa
YP_050933.1	Similar to Acinetobacter calcoaceticus 3-carboxy-cis,cis-muconate cycloisomerase PcaB SWALL:PCAB_ACICA (SWALL:Q59092) (452 aa) fasta scores: E(): 2.3e-62, 41.03% id in 446 aa, and to Bradyrhizobium japonicum pcab protein PcaB or bll7942 SWALL:BAC53207 (EMBL:AP005964) (453 aa) fasta scores: E(): 1.1e-126, 72.93% id in 447 aa
YP_050934.1	Similar to Clostridium acetobutylicum 2-oxoglutarate/malate translocator cac1590 SWALL:Q97IQ0 (EMBL:AE007668) (476 aa) fasta scores: E(): 4.3e-79, 44.03% id in 461 aa, and to Bacillus subtilis YflS protein yflS SWALL:O34726 (EMBL:Z99108) (478 aa) fasta scores: E(): 3.1e-81, 42.46% id in 478 aa
YP_050935.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yqae or b2666 or c3215 or z3965 or ecs3527 SWALL:YQAE_ECOLI (SWALL:P77240) (52 aa) fasta scores: E(): 8.5e-17, 82.69% id in 52 aa, and to Salmonella typhimurium, and Salmonella typhi  yqae family transport protein yqae or stm2796 or sty2916 SWALL:Q8XF49 (EMBL:AE008827) (52 aa) fasta scores: E(): 6.7e-16, 82.35% id in 51 aa
YP_050936.1	Similar to Pseudomonas stutzeri NosA protein precursor NosA SWALL:Q00620 (EMBL:M60717) (683 aa) fasta scores: E(): 9.3e-150, 57.39% id in 669 aa, and to Yersinia pestis  membrane receptor protein ypo0164 or y3948 SWALL:Q8ZJE5 (EMBL:AJ414141) (686 aa) fasta scores: E(): 4.6e-177, 64.46% id in 667 aa
YP_050937.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa3791 SWALL:Q9HXK6 (EMBL:AE004798) (153 aa) fasta scores: E(): 3.2, 27.51% id in 149 aa
YP_050938.1	Similar to Yersinia pestis hypothetical protein ypo2434 or y1902 SWALL:Q8ZDW4 (EMBL:AJ414152) (70 aa) fasta scores: E(): 4.7e-15, 67.14% id in 70 aa, and to Caulobacter crescentus hypothetical protein Cc0128 SWALL:Q9ABU2 (EMBL:AE005687) (66 aa) fasta scores: E(): 2.2e-05, 43.54% id in 62 aa
YP_050939.1	Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 1.6e-51, 45.81% id in 299 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 2.2e-53, 46.33% id in 300 aa
YP_050940.1	Similar to Xanthomonas maltophilia metallo-beta-lactamase precursor BlaS SWALL:Q9F238 (EMBL:AJ291672) (290 aa) fasta scores: E(): 9.3e-15, 29.24% id in 277 aa, and to Fluoribacter gormanii metallo-beta-lactamase Fez-1 protein blafez-1 SWALL:Q9K578 (EMBL:Y17896) (282 aa) fasta scores: E(): 7e-16, 29.04% id in 241 aa, and to Xanthomonas maltophilia metallo-beta-lactamase l1 precursor SWALL:BLA1_XANMA (SWALL:P52700) (290 aa) fasta scores: E(): 5.2e-14, 30.21% id in 235 aa
YP_050941.1	Similar to Shigella flexneri, and Shigella flexneri 2a  stborf2 or MvpA SWALL:O06662 (EMBL:U82621) (132 aa) fasta scores: E(): 3e-33, 69.46% id in 131 aa, and to Rhizobium meliloti ntrr protein ntrr or ntrr1 or r02418 or smc01521 SWALL:Q9L380 (EMBL:AJ277847) (134 aa) fasta scores: E(): 8e-09, 39.25% id in 135 aa
YP_050942.1	Similar to Shigella flexneri MvpT protein SWALL:CAC05863 (EMBL:AL391753) (75 aa) fasta scores: E(): 8e-18, 68.91% id in 74 aa, and to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 0.0048, 31.81% id in 66 aa
YP_050943.1	Similar to Shigella flexneri 2a hypothetical 32.7 kDa protein SWALL:Q9AL39 (EMBL:AF200692) (280 aa) fasta scores: E(): 5.7e-66, 59.55% id in 272 aa, and to Escherichia coli Z1226 protein z1226 SWALL:CAD33792 (EMBL:AJ488511) (281 aa) fasta scores: E(): 8.4e-69, 62.59% id in 270 aa
YP_050944.1	Similar to Shigella flexneri 2a hypothetical 14.0 kDa protein SWALL:Q9AL42 (EMBL:AF200692) (125 aa) fasta scores: E(): 1.5e-21, 58.65% id in 104 aa, and to Escherichia coli hypothetical protein ykfi or b0245 SWALL:YKFI_ECOLI (SWALL:P77692) (113 aa) fasta scores: E(): 1.4e-29, 72.38% id in 105 aa
YP_050945.1	Similar to Shigella flexneri 2a hypothetical 13.8 kDa protein SWALL:Q9AL43 (EMBL:AF200692) (126 aa) fasta scores: E(): 8.4e-25, 64.76% id in 105 aa, and to Escherichia coli hypothetical protein yeeU SWALL:CAD42100 (EMBL:AJ494981) (122 aa) fasta scores: E(): 1.3e-24, 63.46% id in 104 aa
YP_050946.1	Similar to Shigella flexneri intergenic-region protein yees or sf2996 SWALL:AAN44477 (EMBL:AE015313) (163 aa) fasta scores: E(): 4.9e-27, 50.65% id in 152 aa, and to Escherichia coli intergenic-region protein SWALL:Q8VRA3 (EMBL:AF447814) (163 aa) fasta scores: E(): 5.7e-27, 50.65% id in 152 aa, and to Escherichia coli DNA repair protein RadC or b3638 SWALL:RADC_ECOLI (SWALL:P25531) (222 aa) fasta scores: E(): 5.6e-23, 47.51% id in 141 aa
YP_050947.1	Similar to Vibrio cholerae hypothetical protein Vc0505 SWALL:Q9KUL3 (EMBL:AE004136) (122 aa) fasta scores: E(): 0.42, 27.58% id in 116 aa, and to Helicobacter pylori hypothetical protein Hp0204 SWALL:O24996 (EMBL:AE000540) (127 aa) fasta scores: E(): 2.2, 32.18% id in 87 aa
YP_050951.1	Similar to Shigella flexneri 2a hypothetical 32.4 kDa protein SWALL:Q93F04 (EMBL:AF326777) (290 aa) fasta scores: E(): 3.4e-37, 43.43% id in 297 aa, and to Escherichia coli hypothetical 32.5 kDa protein SWALL:Q8RLA4 (EMBL:AY082443) (290 aa) fasta scores: E(): 2.6e-37, 43.43% id in 297 aa
YP_050953.1	Similar to Shigella flexneri 2a hypothetical 23.4 kDa protein SWALL:Q93F37 (EMBL:AF326777) (197 aa) fasta scores: E(): 2.1e-24, 38.58% id in 184 aa, and to Escherichia coli O6 conserved hypothetical protein c1171 SWALL:AAN79639 (EMBL:AE016758) (197 aa) fasta scores: E(): 1.8e-24, 38.91% id in 185 aa
YP_050954.1	Similar to Shigella flexneri orf, conserved hypothetical protein AlpA or sf2987 SWALL:AAN44468 (EMBL:AE015312) (68 aa) fasta scores: E(): 3.4e-18, 78.68% id in 61 aa, and to Escherichia coli O6 conserved hypothetical protein c0306 SWALL:Q8FKT9 (EMBL:AE016755) (68 aa) fasta scores: E(): 2.4e-18, 80.32% id in 61 aa
YP_050955.1	Similar to Shigella flexneri 2a hypothetical 19.8 kDa protein SWALL:Q93F12 (EMBL:AF326777) (173 aa) fasta scores: E(): 2.2e-16, 41.93% id in 124 aa, and to Escherichia coli O6 hypothetical protein c2498 SWALL:AAN80954 (EMBL:AE016762) (136 aa) fasta scores: E(): 1.8e-16, 41.93% id in 124 aa
YP_050956.1	Similar to Shigella flexneri 2a hypothetical 24.0 kDa protein SWALL:Q93F08 (EMBL:AF326777) (202 aa) fasta scores: E(): 6.2e-12, 31.84% id in 179 aa, and to Escherichia coli O6 hypothetical protein c0305 SWALL:AAN78793 (EMBL:AE016755) (202 aa) fasta scores: E(): 7.2e-12, 32.06% id in 184 aa
YP_050957.1	Similar to Yersinia pestis hypothetical protein ypo3708 or y0036 SWALL:Q8ZAT2 (EMBL:AJ414158) (172 aa) fasta scores: E(): 5.9e-59, 81.39% id in 172 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein z0266 or ecs0234 SWALL:O52671 (EMBL:AF044503) (172 aa) fasta scores: E(): 1.6e-56, 79.65% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA3428 (95.349% identity in 172aa overlap) and ECA4275 (94.767% identity in 172aa overlap).
YP_050958.1	Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 2.8e-128, 53.96% id in 606 aa, and to Yersinia pestis  RHS accessory genetic element ypo3606 or y0268 SWALL:Q8ZB23 (EMBL:AJ414158) (800 aa) fasta scores: E(): 1.7e-123, 51.18% id in 633 aa
YP_050959.1	Similar to Photorhabdus luminescens Orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 7.5e-27, 54.81% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 9.4e-16, 39% id in 141 aa
YP_050960.1	Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.1e-128, 41.64% id in 1395 aa, and to Ralstonia solanacearum  RHS-related transmembrane protein rsp1137 or rs05482 SWALL:Q8XQT2 (EMBL:AL646083) (1517 aa) fasta scores: E(): 3e-74, 32.03% id in 1330 aa
YP_050962.1	Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:AAM83857 (EMBL:AJ414158) (63 aa) fasta scores: E(): 0.016, 51.35% id in 37 aa
YP_050963.1	Similar to Salmonella rubislaw flagellin FliC or FlaF or Hag SWALL:FLIC_SALRU (SWALL:P06175) (492 aa) fasta scores: E(): 6.3e-28, 34% id in 497 aa, and to Escherichia coli flagellin SWALL:Q93ES4 (EMBL:AF345848) (487 aa) fasta scores: E(): 1.9e-30, 34.86% id in 499 aa
YP_050964.1	Similar to Salmonella typhimurium colanic acid capsular biosynthesis activation protein A RcsA or stm1982 SWALL:RCSA_SALTY (SWALL:P54698) (207 aa) fasta scores: E(): 1, 25.66% id in 113 aa, and to Citrobacter freundii transcriptional regulatory protein EcnR SWALL:ECNR_CITFR (SWALL:O69280) (199 aa) fasta scores: E(): 0.0024, 30.09% id in 103 aa
YP_050965.1	Similar to Fusobacterium nucleatum hypothetical protein Fn0445 SWALL:Q8RG72 (EMBL:AE010556) (292 aa) fasta scores: E(): 1.3e-13, 27.55% id in 294 aa
YP_050967.1	Similar to Xylella fastidiosa phage-related protein xf1763 SWALL:Q9PCL5 (EMBL:AE003998) (280 aa) fasta scores: E(): 7.8e-05, 26.69% id in 221 aa, and to Xanthomonas axonopodis phage-related protein orf84 or xac2285 SWALL:Q8PK90 (EMBL:AE011865) (320 aa) fasta scores: E(): 0.0092, 25.07% id in 327 aa
YP_050969.1	Similar to the C-terminal regions of many including Pseudomonas aeruginosa sensor protein PilS or pa4546 SWALL:PILS_PSEAE (SWALL:P33639) (530 aa) fasta scores: E(): 2.3e-07, 27.48% id in 262 aa, and to Myxococcus xanthus AsgA asga476 SWALL:Q50853 (EMBL:U20214) (385 aa) fasta scores: E(): 1.1e-05, 27.9% id in 301 aa
YP_050970.1	Similar to Yersinia pestis  prophage P4 integrase IntB or y0749 SWALL:AAM84336 (EMBL:AE013677) (431 aa) fasta scores: E(): 1.7e-120, 72.53% id in 415 aa, and to Shigella flexneri Int or sf2964 SWALL:AAN44445 (EMBL:AE015309) (420 aa) fasta scores: E(): 3.5e-112, 67.95% id in 415 aa
YP_050971.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA or b1912 or c2325 or z3000 or ecs2650 SWALL:PGSA_ECOLI (SWALL:P06978) (181 aa) fasta scores: E(): 4.1e-57, 79.44% id in 180 aa
YP_050972.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_050973.1	in Escherichia coli the protein UvrY is part of a two-component system along with BarA that is needed for efficient switching between glycolytic and gluconeogenic carbon sources possibly by regulating the Csr system; in Salmonella SirA and BarA regulate virulence gene expression also via the Csr system
YP_050974.1	Similar to Yersinia pestis hypothetical protein Ypo1864 SWALL:Q8ZF54 (EMBL:AJ414150) (74 aa) fasta scores: E(): 2.3e-16, 67.56% id in 74 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yecf or stm1949 or sty2157 SWALL:Q8XEK4 (EMBL:AE008786) (74 aa) fasta scores: E(): 7.4e-16, 62.16% id in 74 aa
YP_050976.1	involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine
YP_050977.1	Similar to Escherichia fergusonii hypothetical protein YaiB SWALL:YAIB_ESCFE (SWALL:P28243) (86 aa) fasta scores: E(): 0.025, 38.59% id in 57 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yaib or stm0383 or sty0415 SWALL:Q8XG49 (EMBL:AE008713) (88 aa) fasta scores: E(): 0.04, 31.76% id in 85 aa
YP_050979.1	Partial CDS. Similar to the N-terminal region of Escherichia coli nitrogen assimilation regulatory protein Nac or b1988 SWALL:NAC_ECOLI (SWALL:Q47005) (305 aa) fasta scores: E(): 1.4e-23, 77.77% id in 90 aa
YP_050980.1	Similar to Yersinia pestis integrase IntB or ypo3438 SWALL:Q8ZBH6 (EMBL:AJ414157) (419 aa) fasta scores: E(): 6.6e-96, 56.5% id in 423 aa, and to Shigella flexneri integrase IntB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 3.7e-90, 57.46% id in 402 aa
YP_050982.1	Similar to Escherichia coli, and Salmonella typhimurium yebb protein yebb or ydjA SWALL:Q9JMR6 (EMBL:AP001918) (299 aa) fasta scores: E(): 6.9e-19, 42.69% id in 178 aa, and to Vibrio vulnificus predicted nucleotide-binding protein vv12473 SWALL:AAO10837 (EMBL:AE016805) (299 aa) fasta scores: E(): 7.4e-27, 48.2% id in 195 aa
YP_050983.1	Weakly similar to Deinococcus radiodurans hypothetical protein Dra0366 dra0366 SWALL:Q9RYF2 (EMBL:AE001863) (172 aa) fasta scores: E(): 3e-05, 39.62% id in 106 aa, and to Streptococcus mutans hypothetical protein smu.804 SWALL:AAN58522 (EMBL:AE014921) (404 aa) fasta scores: E(): 0.68, 26.45% id in 155 aa
YP_050984.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 DNA-binding protein h-ns SWALL:HNS_ECOLI (SWALL:P08936) (136 aa) fasta scores: E(): 4.1e-23, 62.68% id in 134 aa, and to Erwinia chrysanthemi Hns regulatory protein hnS SWALL:O53007 (EMBL:X89444) (135 aa) fasta scores: E(): 3.1e-23, 63.15% id in 133 aa. Also similar to ECA1665 (87.970% id in 133 aa overlap) and to ECA2328 (62.406% id in 133 aa overlap)
YP_050985.1	Similar to Escherichia coli O6 hypothetical protein c2396 SWALL:Q8FGI1 (EMBL:AE016762) (104 aa) fasta scores: E(): 1e-09, 48% id in 100 aa, and to Bacteroides nodosus mobilisation protein C MobC SWALL:Q9EXQ0 (EMBL:Y19120) (99 aa) fasta scores: E(): 2.5, 36.2% id in 58 aa
YP_050987.1	Similar to Methanosarcina mazei conserved protein mm3163 SWALL:Q8PSB8 (EMBL:AE013574) (53 aa) fasta scores: E(): 4.5e-05, 44.44% id in 54 aa
YP_050988.1	Similar to Bradyrhizobium japonicum Bsl8315 protein bsl8315 SWALL:BAC53580 (EMBL:AP005965) (98 aa) fasta scores: E(): 5e-16, 53.26% id in 92 aa, and to Bradyrhizobium japonicum Bsr8247 protein bsr8247 SWALL:BAC53512 (EMBL:AP005965) (94 aa) fasta scores: E(): 5.3e-14, 49.43% id in 89 aa
YP_050989.1	Similar to Xanthomonas axonopodis plasmid mobilization protein MobL or xac3260 SWALL:Q8PHJ4 (EMBL:AE011971) (530 aa) fasta scores: E(): 4.1e-17, 32.84% id in 274 aa, and to Rhizobium loti probable conjugal transfer protein, TraA mll0964 SWALL:Q98LM6 (EMBL:AP002996) (1015 aa) fasta scores: E(): 1.6e-21, 36.1% id in 277 aa, and to Staphylococcus aureus orit nickase NeS neS SWALL:O87361 (EMBL:AF051917) (665 aa) fasta scores: E(): 2.4e-16, 33.99% id in 203 aa
YP_050990.1	Weakly similar to Sulfolobus tokodaii hypothetical protein St0486 SWALL:Q975C2 (EMBL:AP000982) (268 aa) fasta scores: E(): 0.37, 28.5% id in 214 aa, and to Fusobacterium nucleatum magnesium and cobalt transport protein cora fn0332 SWALL:Q8RGG6 (EMBL:AE010545) (351 aa) fasta scores: E(): 3.3, 25.09% id in 263 aa
YP_050995.1	Similar to Escherichia coli O6 hypothetical protein c2401 SWALL:Q8FGH6 (EMBL:AE016762) (191 aa) fasta scores: E(): 1.1e-32, 51.63% id in 184 aa
YP_050996.1	Similar to Escherichia coli O157:H7 z3937 protein z3937 or ecs3506 SWALL:Q8X978 (EMBL:AE005493) (131 aa) fasta scores: E(): 1.4e-16, 42.24% id in 116 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0042 pa0042 SWALL:Q9I790 (EMBL:AE004444) (131 aa) fasta scores: E(): 4.9, 27.64% id in 123 aa
YP_050997.1	Similar to Anabaena sp. hypothetical protein All3975 SWALL:Q8YQ60 (EMBL:AP003594) (403 aa) fasta scores: E(): 0.2, 22.5% id in 280 aa, and to Pseudomonas putida hypothetical protein pp2277 SWALL:AAN67890 (EMBL:AE016782) (461 aa) fasta scores: E(): 0.7, 22.09% id in 448 aa
YP_050999.1	Similar to Pseudoalteromonas sp. PS1M3 RePlication protein Rep SWALL:Q9LCJ6 (EMBL:AB022096) (193 aa) fasta scores: E(): 3.5e-11, 33.52% id in 173 aa, and to Zymomonas mobilis 20.9 kDa protein SWALL:21KD_ZYMMO (SWALL:P15256) (184 aa) fasta scores: E(): 1.8e-12, 32.55% id in 172 aa, and to Bacteroides fragilis RepA SWALL:Q45126 (EMBL:U30316) (226 aa) fasta scores: E(): 7.8e-09, 31.51% id in 165 aa
YP_051001.1	Similar to Ruminobacter amylophilus replication protein Rep A SWALL:Q9ZN68 (EMBL:AB022866) (129 aa) fasta scores: E(): 0.00038, 31.68% id in 101 aa
YP_051002.1	Similar to Corynebacterium efficiens  transcription regulator ce1210 SWALL:BAC18020 (EMBL:AP005218) (378 aa) fasta scores: E(): 6.6e-43, 38.29% id in 376 aa, and to Neisseria meningitidis transcriptional regulator, hth_3 family nmb2012 SWALL:Q9JXJ6 (EMBL:AE002551) (363 aa) fasta scores: E(): 1.5e-30, 39.37% id in 353 aa
YP_051003.1	Similar to Brucella suis replication protein RepB bra1203 SWALL:Q8FUL8 (EMBL:AE014612) (328 aa) fasta scores: E(): 3.7, 24.3% id in 251 aa
YP_051004.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA-binding protein StpA or HnsB or b2669 or z3968 or ecs3530 or sf2697 SWALL:STPA_ECOLI (SWALL:P30017) (134 aa) fasta scores: E(): 0.0029, 42.18% id in 64 aa, and to Escherichia coli O6 hypothetical protein c2413 SWALL:Q8FGG4 (EMBL:AE016762) (80 aa) fasta scores: E(): 2.7e-18, 78.2% id in 78 aa
YP_051009.1	Similar to Bacteriophage P4 hypothetical 9.7 kDa protein SWALL:Y9K_BPP4 (SWALL:P12552) (88 aa) fasta scores: E(): 5.4e-05, 42.3% id in 52 aa, and to Yersinia pseudotuberculosis DNA-binding protein SWALL:Q9X9G5 (EMBL:AJ236887) (61 aa) fasta scores: E(): 1.5e-06, 45.45% id in 55 aa
YP_051010.1	Similar to Salmonella typhi hypothetical protein t0869 SWALL:AAO68551 (EMBL:AE016837) (287 aa) fasta scores: E(): 8.5e-72, 70% id in 280 aa
YP_051013.1	Similar to Escherichia coli hypothetical transcriptional regulator ycjz or b1328 SWALL:YCJZ_ECOLI (SWALL:P77333) (299 aa) fasta scores: E(): 1e-73, 66.21% id in 296 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.3e-54, 54.39% id in 296 aa
YP_051014.1	Similar to Escherichia coli O157:H7  oxidoreductase z0369 or ecs0331 SWALL:Q8X6H2 (EMBL:AE005207) (380 aa) fasta scores: E(): 1.5e-79, 58.44% id in 373 aa, and to Oceanobacillus iheyensis NADH-dependent flavin oxidoreductase ob3315 SWALL:BAC15271 (EMBL:AP004604) (373 aa) fasta scores: E(): 3.6e-62, 47.97% id in 371 aa
YP_051016.1	Similar to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc2597 or rs00845 SWALL:Q8XW78 (EMBL:AL646070) (252 aa) fasta scores: E(): 1.8e-81, 88.09% id in 252 aa, and to Bradyrhizobium japonicum Blr4183 protein blr4183 SWALL:BAC49448 (EMBL:AP005950) (254 aa) fasta scores: E(): 5e-42, 49.18% id in 246 aa
YP_051017.1	Partial CDS. Similar to the N-terminal region of Ralstonia solanacearum probable glutathione-s-transferase protein rsc2594 or rs00842 SWALL:Q8XW81 (EMBL:AL646070) (224 aa) fasta scores: E(): 0.00015, 69.44% id in 36 aa, and to Rhizobium meliloti  glutathione s-transferase protein gst3 or r00303 or smc00383 SWALL:Q92SR2 (EMBL:AL591783) (228 aa) fasta scores: E(): 0.012, 57.14% id in 35 aa
YP_051018.1	Similar to Escherichia coli bicyclomycin resistance protein Bcr or BicA or BicR or Sur or SuxA or b2182 SWALL:BCR_ECOLI (SWALL:P28246) (396 aa) fasta scores: E(): 2.1e-29, 30.52% id in 380 aa, and to Pseudomonas putida multidrug resistance transporter, bcr/cfla family pp3304 SWALL:AAN68911 (EMBL:AE016786) (412 aa) fasta scores: E(): 3.5e-93, 65.33% id in 401 aa
YP_051019.1	FabF, beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.
YP_051020.1	Similar to Pseudomonas putida rnd efflux transporter pp3302 SWALL:AAN68909 (EMBL:AE016786) (1030 aa) fasta scores: E(): 0, 84.11% id in 1020 aa, and to Xylella fastidiosa cation efflux system protein xf2083 SWALL:Q9PBQ7 (EMBL:AE004023) (1020 aa) fasta scores: E(): 0, 83.38% id in 1017 aa
YP_051021.1	Similar to Pseudomonas putida RND efflux membrane fusion protein pp3301 SWALL:AAN68908 (EMBL:AE016786) (367 aa) fasta scores: E(): 2.8e-81, 70.1% id in 368 aa, and to Xylella fastidiosa component of multidrug efflux system xf2084 SWALL:Q9PBQ6 (EMBL:AE004023) (368 aa) fasta scores: E(): 3.9e-75, 63.95% id in 369 aa
YP_051022.1	Similar to Pseudomonas putida transcriptional regulator, TetR family pp3300 SWALL:AAN68907 (EMBL:AE016786) (204 aa) fasta scores: E(): 4.3e-53, 65.19% id in 204 aa, and to Xylella fastidiosa transcriptional regulator xf2085 SWALL:Q9PBQ5 (EMBL:AE004024) (205 aa) fasta scores: E(): 1.8e-50, 64.87% id in 205 aa
YP_051023.1	Similar to Ralstonia solanacearum  drug efflux lipoprotein rsc3208 or rs02424 SWALL:Q8XUI0 (EMBL:AL646074) (486 aa) fasta scores: E(): 4e-119, 69.19% id in 487 aa, and to Xanthomonas campestris outer membrane protein oprn or xcc0419 SWALL:Q8PDC1 (EMBL:AE012139) (490 aa) fasta scores: E(): 9.1e-110, 65.09% id in 487 aa
YP_051024.1	Similar to Agrobacterium tumefaciens short-chain dehydrogenase atu4220 or agr_l_1280 SWALL:Q8U879 (EMBL:AE009351) (291 aa) fasta scores: E(): 8.4e-41, 46.8% id in 250 aa, and to Pseudomonas aeruginosa probable short-chain dehydrogenase pa0658 SWALL:Q9I5R3 (EMBL:AE004500) (266 aa) fasta scores: E(): 8.5e-26, 37.3% id in 252 aa
YP_051025.1	Similar to Rhizobium loti hypothetical protein Mll3985 SWALL:Q98F15 (EMBL:AP003003) (137 aa) fasta scores: E(): 3e-18, 51.32% id in 113 aa, and to Xanthomonas campestris hypothetical protein Xcc0062 SWALL:Q8PEB9 (EMBL:AE012100) (116 aa) fasta scores: E(): 1.5e-16, 49.51% id in 103 aa
YP_051026.1	Similar to Xanthomonas campestris hypothetical protein Xcc1216 SWALL:Q8PBA7 (EMBL:AE012221) (244 aa) fasta scores: E(): 8.1e-40, 50.4% id in 248 aa, and to Streptomyces coelicolor hypothetical protein sco5465 or sc3d11.22 SWALL:Q9L1E0 (EMBL:AL939123) (220 aa) fasta scores: E(): 8.7e-33, 45.57% id in 226 aa
YP_051027.1	Similar to Pantoea agglomerans NifQ protein NifQ SWALL:Q52074 (EMBL:X99694) (171 aa) fasta scores: E(): 1.7e-37, 59.64% id in 171 aa, and to Klebsiella pneumoniae NifQ protein NifQ SWALL:NIFQ_KLEPN (SWALL:P10392) (167 aa) fasta scores: E(): 1.8e-33, 58.08% id in 167 aa
YP_051028.1	Similar to Klebsiella pneumoniae femo cofactor biosynthesis protein NifB SWALL:NIFB_KLEPN (SWALL:P10390) (468 aa) fasta scores: E(): 8.2e-132, 70.08% id in 468 aa, and to Pantoea agglomerans NifB protein NifB SWALL:Q57037 (EMBL:X99694) (465 aa) fasta scores: E(): 1e-124, 69.02% id in 452 aa
YP_051029.1	Similar to Klebsiella pneumoniae nif-specific regulatory protein NifA SWALL:NIFA_KLEPN (SWALL:P03027) (524 aa) fasta scores: E(): 3.2e-156, 77.37% id in 526 aa, and to Enterobacter agglomerans nif-specific regulatory protein NifA SWALL:NIFA_ENTAG (SWALL:P54930) (518 aa) fasta scores: E(): 4.3e-144, 71.59% id in 528 aa
YP_051030.1	Similar to Klebsiella pneumoniae nitrogen fixation regulatory protein NifL SWALL:NIFL_KLEPN (SWALL:P06772) (495 aa) fasta scores: E(): 2e-130, 66.46% id in 495 aa, and to Pantoea agglomerans NifL protein NifL SWALL:Q57340 (EMBL:X99694) (495 aa) fasta scores: E(): 5.8e-122, 61.21% id in 495 aa
YP_051031.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_051032.1	Similar to Klebsiella pneumoniae protein NifM SWALL:NIFM_KLEPN (SWALL:P08534) (266 aa) fasta scores: E(): 2.1e-38, 43.82% id in 267 aa, and to Pantoea agglomerans NifM protein NifM SWALL:Q52073 (EMBL:X99694) (264 aa) fasta scores: E(): 7.7e-36, 40.54% id in 259 aa
YP_051033.1	Similar to Klebsiella pneumoniae NifZ protein NifZ SWALL:NIFZ_KLEPN (SWALL:P08533) (148 aa) fasta scores: E(): 3.6e-33, 57.24% id in 145 aa, and to Pantoea agglomerans NifZ protein NifZ SWALL:Q52072 (EMBL:X99694) (147 aa) fasta scores: E(): 5.6e-30, 56.55% id in 145 aa
YP_051034.1	Similar to Klebsiella pneumoniae nitrogenase stabilizing/protective protein NifW SWALL:NIFW_KLEPN (SWALL:P09137) (86 aa) fasta scores: E(): 4.7e-19, 70.13% id in 77 aa, and to Enterobacter agglomerans nitrogenase stabilizing/protective protein NifW SWALL:NIFW_ENTAG (SWALL:Q52071) (112 aa) fasta scores: E(): 2.5e-12, 53.84% id in 78 aa
YP_051035.1	Similar to Klebsiella pneumoniae homocitrate synthase NifV SWALL:NIFV_KLEPN (SWALL:P05345) (381 aa) fasta scores: E(): 1.8e-100, 68.94% id in 380 aa, and to Enterobacter agglomerans homocitrate synthase NifV SWALL:NIFV_ENTAG (SWALL:Q52070) (400 aa) fasta scores: E(): 1.6e-95, 68.4% id in 364 aa
YP_051036.1	Similar to Enterobacter agglomerans cysteine desulfurase NifS SWALL:NIFS_ENTAG (SWALL:Q52069) (401 aa) fasta scores: E(): 2.6e-129, 80.09% id in 402 aa, and to Klebsiella pneumoniae cysteine desulfurase NifS SWALL:NIFS_KLEPN (SWALL:P05344) (397 aa) fasta scores: E(): 4.3e-120, 75.37% id in 402 aa
YP_051037.1	Similar to Klebsiella pneumoniae nitrogen fixation protein NifU SWALL:NIFU_KLEPN (SWALL:P05343) (274 aa) fasta scores: E(): 3e-88, 81% id in 279 aa, and to Pantoea agglomerans NifU protein NifU SWALL:Q52068 (EMBL:X99694) (275 aa) fasta scores: E(): 8.2e-84, 77.25% id in 277 aa
YP_051038.1	Similar to Pantoea agglomerans NifX protein NifX SWALL:Q52066 (EMBL:X99694) (154 aa) fasta scores: E(): 1.1e-37, 61.84% id in 152 aa, and to Klebsiella pneumoniae NifX protein NifX SWALL:NIFX_KLEPN (SWALL:P09136) (156 aa) fasta scores: E(): 2.9e-36, 62.74% id in 153 aa
YP_051039.1	functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe
YP_051040.1	Similar to Klebsiella pneumoniae nitrogenase iron-molybdenum cofactor biosynthesis protein NifE SWALL:NIFE_KLEPN (SWALL:P08737) (457 aa) fasta scores: E(): 1.9e-156, 86.62% id in 456 aa, and to Pantoea agglomerans NifE protein NifE SWALL:Q52064 (EMBL:X99694) (457 aa) fasta scores: E(): 7.8e-147, 80.04% id in 456 aa
YP_051041.1	Similar to Xanthomonas campestris transcriptional regulator xcc0044 SWALL:Q8PED7 (EMBL:AE012097) (189 aa) fasta scores: E(): 7.7e-20, 49.6% id in 125 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2484 SWALL:Q9I0Z8 (EMBL:AE004676) (204 aa) fasta scores: E(): 5.9e-19, 36.68% id in 199 aa
YP_051042.1	Similar to Pseudomonas syringae major facilitator family transporter pspto3068 SWALL:AAO56557 (EMBL:AE016867) (375 aa) fasta scores: E(): 1.1e-88, 65.14% id in 373 aa, and to Pseudomonas aeruginosa probable mfs transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.6e-73, 54.02% id in 385 aa
YP_051043.1	Similar to Klebsiella pneumoniae NifY protein NifY SWALL:NIFY_KLEPN (SWALL:P09135) (229 aa) fasta scores: E(): 2e-52, 60.76% id in 209 aa, and to Pantoea agglomerans NifY protein NifY SWALL:Q52063 (EMBL:X99694) (224 aa) fasta scores: E(): 4.9e-51, 58.22% id in 225 aa
YP_051044.1	Similar to Klebsiella pneumoniae NifT protein NifT SWALL:NIFT_KLEPN (SWALL:P09134) (72 aa) fasta scores: E(): 5e-18, 66.66% id in 72 aa, and to Pantoea agglomerans NifT protein NifT SWALL:Q52062 (EMBL:X99694) (71 aa) fasta scores: E(): 6.3e-17, 63.38% id in 71 aa
YP_051045.1	Similar to Klebsiella pneumoniae nitrogenase molybdenum-iron protein beta chain NifK SWALL:NIFK_KLEPN (SWALL:P09772) (520 aa) fasta scores: E(): 1.7e-185, 83.14% id in 522 aa, and to Pseudomonas stutzeri A15 mo nitrogenase subunit NifK SWALL:Q93JU9 (EMBL:AJ313205) (523 aa) fasta scores: E(): 3e-152, 68.26% id in 523 aa
YP_051046.1	Similar to Klebsiella pneumoniae nitrogenase molybdenum-iron protein alpha chain NifD SWALL:NIFD_KLEPN (SWALL:P00466) (483 aa) fasta scores: E(): 2.2e-176, 87.96% id in 482 aa, and to Azotobacter vinelandii nitrogenase molybdenum-iron protein alpha chain NifD SWALL:NIFD_AZOVI (SWALL:P07328) (491 aa) fasta scores: E(): 5e-151, 73.84% id in 478 aa
YP_051047.1	Similar to Klebsiella pneumoniae nitrogenase iron protein NifH SWALL:NIFH_KLEPN (SWALL:P00458) (292 aa) fasta scores: E(): 3.2e-104, 94.84% id in 291 aa, and to Azotobacter chroococcum mcd 1 nitrogenase iron protein 1 NifH1 or NifH SWALL:NIH1_AZOCH (SWALL:P26248) (291 aa) fasta scores: E(): 1.4e-96, 87.24% id in 290 aa
YP_051048.1	Similar to Klebsiella pneumoniae pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_KLEPN (SWALL:P03833) (1171 aa) fasta scores: E(): 0, 78.27% id in 1169 aa, and to Enterobacter agglomerans pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_ENTAG (SWALL:P19543) (1173 aa) fasta scores: E(): 0, 73.34% id in 1178 aa. Also similar to ECA0824 (NifJ) (47.377% id. in 1182 aa overlap)
YP_051049.1	Similar to Corynebacterium efficiens  transport protein ce2200 SWALL:BAC19010 (EMBL:AP005221) (555 aa) fasta scores: E(): 1e-89, 51.49% id in 503 aa, and to Micrococcus sp. 28  integral membrane transporter SWALL:Q8VPP9 (EMBL:AY034092) (515 aa) fasta scores: E(): 2.1e-94, 51.19% id in 502 aa
YP_051051.1	Similar to Rhizobium loti probable peptide ABC transporter ATP-binding abc transporter protein msi192 SWALL:Q8KJF3 (EMBL:AL672113) (335 aa) fasta scores: E(): 1.6e-55, 52.81% id in 320 aa, and to Bacillus halodurans oligopeptide ABC transporter appd or bh0350 SWALL:Q9KFX0 (EMBL:AP001508) (329 aa) fasta scores: E(): 6.5e-57, 53.53% id in 325 aa
YP_051052.1	Similar to Brucella abortus  ABC transporter permease protein c batn1953.orf22 SWALL:Q8VQK5 (EMBL:AF454951) (296 aa) fasta scores: E(): 6.2e-46, 43.86% id in 269 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3267 or agr_l_3102 SWALL:Q8UAV0 (EMBL:AE009256) (291 aa) fasta scores: E(): 3.6e-45, 44.44% id in 270 aa
YP_051053.1	Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3268 or agr_l_3101 SWALL:Q8UAU9 (EMBL:AE009256) (313 aa) fasta scores: E(): 1.6e-50, 47.72% id in 308 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr3342 SWALL:BAC48607 (EMBL:AP005947) (313 aa) fasta scores: E(): 6.3e-50, 47.07% id in 308 aa
YP_051054.1	Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3269 or agr_l_3099 SWALL:Q8UAU8 (EMBL:AE009256) (517 aa) fasta scores: E(): 1.6e-43, 31.66% id in 518 aa, and to Bradyrhizobium japonicum ABC transporter peptide-binding protein blr0308 SWALL:BAC45573 (EMBL:AP005936) (518 aa) fasta scores: E(): 7.8e-41, 30.42% id in 516 aa
YP_051055.1	Similar to Oceanobacillus iheyensis hypothetical conserved protein ob3166 SWALL:Q8ELQ3 (EMBL:AP004603) (399 aa) fasta scores: E(): 7.7e-81, 58.91% id in 387 aa, and to Staphylococcus aureus HmrA protein HmrA or mw2057 SWALL:Q8NVF8 (EMBL:AP004829) (394 aa) fasta scores: E(): 1.8e-61, 46.68% id in 392 aa
YP_051056.1	Similar to Streptomyces coelicolor  isomerase sco3475 or sce65.11c or sce56.11C SWALL:Q9RKG2 (EMBL:AL939116) (377 aa) fasta scores: E(): 1.1e-43, 39.08% id in 394 aa, and to Oceanobacillus iheyensis hypothetical protein ob2215 SWALL:BAC14171 (EMBL:AP004600) (382 aa) fasta scores: E(): 6.9e-41, 36.36% id in 396 aa
YP_051057.1	Similar to Bradyrhizobium japonicum ABC transporter substrate-binding protein blr8117 SWALL:BAC53382 (EMBL:AP005964) (284 aa) fasta scores: E(): 1.5e-26, 34.84% id in 264 aa, and to Streptococcus pneumoniae ABC transporter substrate-binding protein-glutamine-binding protein GlnH or spr1251 SWALL:AAL00055 (EMBL:AE008497) (271 aa) fasta scores: E(): 3.2e-13, 28.93% id in 273 aa
YP_051058.1	Similar to Bradyrhizobium japonicum Bll6362 protein Bll6362 SWALL:BAC51627 (EMBL:AP005958) (477 aa) fasta scores: E(): 4.9e-07, 26.58% id in 459 aa, and to Rhizobium loti hypothetical protein Mll9010 SWALL:Q982L5 (EMBL:AP003015) (457 aa) fasta scores: E(): 5.4e-07, 26.48% id in 438 aa
YP_051059.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine transport system permease protein glnp glnp or b0810 or c0895 or z1032 or ecs0888 or sf0761 SWALL:GLNP_ECOLI (SWALL:P10345) (219 aa) fasta scores: E(): 1.3e-22, 38.46% id in 221 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 3.9e-29, 40.18% id in 219 aa
YP_051060.1	Similar to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 9.4e-32, 44.29% id in 219 aa, and to Bacillus halodurans ABC transporter bh1462 SWALL:Q9KCV7 (EMBL:AP001512) (218 aa) fasta scores: E(): 1.4e-28, 40.74% id in 216 aa
YP_051061.1	Similar to Corynebacterium efficiens  amino acid ABC transporter ATP-binding protein ce1443 SWALL:BAC18253 (EMBL:AP005218) (254 aa) fasta scores: E(): 1.1e-43, 57.32% id in 239 aa, and to Streptomyces coelicolor ATP-binding protein atrc or sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL939123) (253 aa) fasta scores: E(): 1.6e-43, 55.02% id in 249 aa
YP_051062.1	Similar to Listeria monocytogenes D-alanine aminotransferase Dat or DaaA or lmo1619 SWALL:DAAA_LISMO (SWALL:O85046) (289 aa) fasta scores: E(): 2.2e-24, 35.21% id in 284 aa, and to Methanopyrus kandleri branched-chain amino acid aminotransferase ilve or mk1627 SWALL:Q8TUX5 (EMBL:AE010451) (295 aa) fasta scores: E(): 6.5e-30, 34.05% id in 276 aa
YP_051063.1	Similar to Pseudomonas putida hydrolase, alpha/beta fold family pp4540 SWALL:AAN70113 (EMBL:AE016791) (270 aa) fasta scores: E(): 1e-14, 27.92% id in 265 aa, and to Vibrio vulnificus predicted hydrolase or acyltransferase vv10627 SWALL:AAO09141 (EMBL:AE016799) (272 aa) fasta scores: E(): 1.4e-14, 29% id in 262 aa
YP_051064.1	Similar to Rhizobium meliloti  transcription regulator protein r02971 or smc03122 SWALL:Q92LQ9 (EMBL:AL591792) (315 aa) fasta scores: E(): 2.5e-28, 35.31% id in 286 aa, and to Brucella suis transcriptional regulator, LysR family bra0952 SWALL:AAN34123 (EMBL:AE014588) (304 aa) fasta scores: E(): 2e-27, 31.29% id in 294 aa
YP_051065.1	Similar to Escherichia coli mutator MutT protein MutT or b0099 SWALL:MUTT_ECOLI (SWALL:P08337) (129 aa) fasta scores: E(): 7.6e-05, 27.04% id in 122 aa, and to Agrobacterium tumefaciens MutT like protein atu1834 or agr_c_3368 SWALL:Q8UEC6 (EMBL:AE009138) (147 aa) fasta scores: E(): 4.4e-08, 31.49% id in 127 aa
YP_051066.1	Similar to unidentified bacterium hypothetical 22.4 kDa protein SWALL:Q93DV2 (EMBL:AF378538) (199 aa) fasta scores: E(): 1.2e-17, 35.67% id in 199 aa, and to Deinococcus radiodurans hypothetical protein Dr0445 SWALL:Q9RX70 (EMBL:AE001904) (191 aa) fasta scores: E(): 2.9e-17, 37.85% id in 177 aa
YP_051067.1	Similar to Pseudomonas fluorescens  transcriptional regulator SWALL:AAN32873 (EMBL:AF461725) (238 aa) fasta scores: E(): 7.6e-57, 61.34% id in 238 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0448 SWALL:Q9I670 (EMBL:AE004482) (302 aa) fasta scores: E(): 2.4e-41, 39.86% id in 301 aa. Also similar to ECA1602 (96.026% id. in 302 aa overlap)
YP_051068.1	Similar to Pseudomonas fluorescens hypothetical protein SWALL:AAN32872 (EMBL:AF461725) (79 aa) fasta scores: E(): 1.6e-14, 59.42% id in 69 aa, and to Bradyrhizobium japonicum Blr3308 protein blr3308 SWALL:BAC48573 (EMBL:AP005947) (105 aa) fasta scores: E(): 0.04, 31.34% id in 67 aa
YP_051070.1	Similar to Pseudomonas sp. WBC-3 methyl parathion hydrolase mpD SWALL:Q841S6 (EMBL:AY251554) (331 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa, and to Plesiomonas sp. DLL-1 methyl parathion degrading protein SWALL:Q93SP1 (EMBL:AY029773) (341 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa
YP_051072.1	Similar to Leptospira interrogans conserved hypothetical protein lb047 SWALL:AAN51606 (EMBL:AE011593) (440 aa) fasta scores: E(): 1.7e-05, 23.3% id in 339 aa, and to Shewanella oneidensis hypothetical protein so1002 SWALL:AAN54075 (EMBL:AE015544) (770 aa) fasta scores: E(): 5.4e-05, 25.16% id in 445 aa
YP_051073.1	member of the small MDR (multidrug resistance) family of transporters; in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin; proton-dependent secondary transporter which exchanges protons for compound translocation
YP_051075.1	Similar to Pseudomonas putida xenobiotic reductase a XenA SWALL:Q9R9V9 (EMBL:AF154061) (363 aa) fasta scores: E(): 2.4e-114, 75.96% id in 362 aa, and to Xanthomonas campestris xenobiotic flavin oxidoreductase a frp or xcc1170 SWALL:Q8PBF2 (EMBL:AE012216) (366 aa) fasta scores: E(): 2.5e-104, 70.44% id in 362 aa
YP_051076.1	Similar to Pseudomonas putida transcriptional regulator, ArsR family pp1253 SWALL:AAN66877 (EMBL:AE016778) (111 aa) fasta scores: E(): 1.1e-24, 65% id in 100 aa, and to Anabaena sp. transcriptional regulator alr1867 SWALL:Q8YVV6 (EMBL:AP003587) (112 aa) fasta scores: E(): 3.3e-16, 50.49% id in 101 aa
YP_051077.1	Similar to Klebsiella oxytoca e-2/e-2' protein SWALL:Q9ZFE7 (EMBL:AF102514) (179 aa) fasta scores: E(): 5.4e-29, 47.61% id in 168 aa, and to Pseudomonas aeruginosa probable oxidase pa1684 SWALL:Q9I341 (EMBL:AE004595) (181 aa) fasta scores: E(): 5.4e-33, 50.88% id in 169 aa
YP_051078.1	Similar to Escherichia coli hypothetical protein yehs or b2124 SWALL:YEHS_ECOLI (SWALL:P33355) (156 aa) fasta scores: E(): 1.4e-37, 62.82% id in 156 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yehs or stm2157 or sty2387 SWALL:Q8XEY4 (EMBL:AE008796) (155 aa) fasta scores: E(): 1e-36, 64% id in 150 aa
YP_051079.1	Similar to the C-terminal region of many including Salmonella typhimurium  inner membrane protein stm4518 SWALL:Q8ZJZ4 (EMBL:AE008912) (171 aa) fasta scores: E(): 0.0011, 36.61% id in 71 aa, and to Escherichia coli, and Salmonella typhimurium ydga protein ydga or ygdB SWALL:Q9Z4C7 (EMBL:AB021078) (313 aa) fasta scores: E(): 6.5e-07, 49.25% id in 67 aa, and to Photorhabdus luminescens  truncated transposase SWALL:Q937N5 (EMBL:AF346497) (79 aa) fasta scores: E(): 0.069, 36% id in 75 aa
YP_051080.1	Similar to Paracoccus denitrificans uroporphyrin-III C-methyltransferase NirE SWALL:NIRE_PARDE (SWALL:Q51701) (287 aa) fasta scores: E(): 2.3e-41, 49.6% id in 256 aa, and to Vibrio cholerae uroporphyrin-III C-methyltransferase vc2561 SWALL:Q9KP18 (EMBL:AE004324) (299 aa) fasta scores: E(): 1.6e-48, 58.15% id in 239 aa
YP_051081.1	Similar to Klebsiella pneumoniae nitrate reductase NasA SWALL:NASA_KLEPN (SWALL:Q06457) (866 aa) fasta scores: E(): 3.4e-170, 56.46% id in 882 aa, and to Agrobacterium tumefaciens nitrate reductase large subunit NasA or atu3900 or agr_l_1895 SWALL:Q8U930 (EMBL:AE009320) (903 aa) fasta scores: E(): 9e-163, 53.77% id in 887 aa
YP_051082.1	Similar to Klebsiella pneumoniae nitrite reductase [NAD(P)H] large subunit NasB SWALL:NIRB_KLEPN (SWALL:Q06458) (957 aa) fasta scores: E(): 0, 70.89% id in 962 aa
YP_051083.1	Similar to Klebsiella pneumoniae nitrate transport protein NasD SWALL:NASD_KLEPN (SWALL:P39459) (262 aa) fasta scores: E(): 2.8e-80, 83.46% id in 260 aa
YP_051084.1	Similar to Klebsiella oxytoca nitrate transporter component nasE SWALL:O32709 (EMBL:L27431) (294 aa) fasta scores: E(): 1.9e-78, 74.03% id in 285 aa
YP_051085.1	Similar to Klebsiella oxytoca nitrate transporter component nasF SWALL:Q48466 (EMBL:L27431) (418 aa) fasta scores: E(): 3.4e-118, 65.85% id in 410 aa
YP_051086.1	Similar to Klebsiella pneumoniae nitrate regulatory protein nasR SWALL:Q48468 (EMBL:L27824) (396 aa) fasta scores: E(): 2.5e-28, 35.11% id in 430 aa
YP_051087.1	Similar to Pectobacterium carotovorum subsp. carotovorum tail fiber SWALL:Q9KW53 (EMBL:AB045036) (632 aa) fasta scores: E(): 2.3e-64, 45.92% id in 577 aa, and to Salmonella typhi bacteriophage tail fiber protein sty1637 SWALL:Q8Z6S9 (EMBL:AL627270) (341 aa) fasta scores: E(): 3.1e-26, 47.36% id in 209 aa
YP_051088.1	Similar to Escherichia coli tail fiber assembly protein homolog T SWALL:TFAB_ECOLI (SWALL:Q47427) (203 aa) fasta scores: E(): 1.6e-18, 42.2% id in 154 aa, and to Bacteriophage HK97 gp29 tfA SWALL:Q9MCR5 (EMBL:AF069529) (202 aa) fasta scores: E(): 7.9e-19, 43.79% id in 153 aa
YP_051089.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 1.2e-172, 80.15% id in 524 aa
YP_051090.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 1.3e-106, 69.12% id in 379 aa
YP_051091.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yidh yidh or b3676 or c4600 or z5171 or ecs4617 or sf3786 SWALL:YIDH_ECOLI (SWALL:P31445) (115 aa) fasta scores: E(): 1e-17, 51.4% id in 107 aa, and to Salmonella typhimurium  inner membrane protein yidh or stm3805 SWALL:Q8ZL05 (EMBL:AE008877) (115 aa) fasta scores: E(): 1.9e-17, 50.46% id in 107 aa
YP_051092.1	Similar to Mycobacterium tuberculosis hypothetical protein rv2273 or mt2334 or mtcy339.37C SWALL:YM73_MYCTU (SWALL:Q50690) (109 aa) fasta scores: E(): 0.017, 33.66% id in 101 aa, and to Corynebacterium glutamicum hypothetical membrane protein Cgl0104 SWALL:Q8NU43 (EMBL:AP005274) (105 aa) fasta scores: E(): 0.32, 22.68% id in 97 aa
YP_051093.1	required for the formation of active formate dehydrogenase
YP_051094.1	Similar to Yersinia pestis multi modular, transcriptional regulator, also  ATP-binding component of a transport system y2350 SWALL:AAM85908 (EMBL:AE013837) (482 aa) fasta scores: E(): 4.4e-116, 63.02% id in 476 aa, and to Escherichia coli hypothetical protein ydcr or b1439 SWALL:YDCR_ECOLI (SWALL:P77730) (468 aa) fasta scores: E(): 5e-114, 62.23% id in 474 aa
YP_051095.1	Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group
YP_051096.1	Similar to Yersinia pestis  membrane protein ypo1652 or y1815 SWALL:Q8ZFP2 (EMBL:AJ414149) (177 aa) fasta scores: E(): 4.5e-28, 47.74% id in 155 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ylac or b0458 or z0570 or ecs0511 or sf0403 SWALL:AAN42059 (EMBL:AE000152) (169 aa) fasta scores: E(): 5.7e-20, 40.88% id in 159 aa
YP_051097.1	Similar to Escherichia coli O157:H7 orf, hypothetical protein chuy or z4917 or ecs4385 SWALL:Q8X5N4 (EMBL:AE005576) (207 aa) fasta scores: E(): 2.1e-40, 56.79% id in 206 aa, and to Shigella dysenteriae hypothetical 21.8 kDa protein shuY SWALL:O70016 (EMBL:U64516) (207 aa) fasta scores: E(): 4.4e-40, 57.28% id in 206 aa
YP_051098.1	Similar to Escherichia coli O6 hypothetical protein chux or c4315 SWALL:AAN82751 (EMBL:AE016768) (164 aa) fasta scores: E(): 1.6e-42, 65% id in 160 aa, and to Shigella dysenteriae hypothetical 18.4 kDa protein shuX SWALL:O70017 (EMBL:U64516) (164 aa) fasta scores: E(): 5.1e-41, 63.75% id in 160 aa
YP_051099.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_051100.1	Similar to Yersinia pestis ABC transporter ATP-binding protein ypo1491 SWALL:Q8ZG28 (EMBL:AJ414148) (531 aa) fasta scores: E(): 2.3e-170, 92.45% id in 530 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ybit or b0820 or c0906 or z1042 or ecs0897 SWALL:YBIT_ECOLI (SWALL:P75790) (530 aa) fasta scores: E(): 1.1e-163, 87.54% id in 530 aa
YP_051101.1	Similar to Erwinia chrysanthemi  antibiotic biosynthesis protein Pab SWALL:Q93KB5 (EMBL:AJ310612) (293 aa) fasta scores: E(): 3e-67, 58.24% id in 297 aa, and to Xanthomonas axonopodis hypothetical protein Xac2912 xac2912 SWALL:Q8PII5 (EMBL:AE011933) (292 aa) fasta scores: E(): 1.2e-34, 39.59% id in 298 aa
YP_051102.1	Similar to Escherichia coli ribosomal-protein-serine acetyltransferase RimL or b1427 SWALL:RIML_ECOLI (SWALL:P13857) (179 aa) fasta scores: E(): 3.6e-16, 38.88% id in 162 aa, and to Shigella flexneri acetylation of N-terminal serine of 30S ribosomal subunit protein l7, acetyl transferase RimL or sf1783 SWALL:AAN43352 (EMBL:AE015198) (183 aa) fasta scores: E(): 9.1e-18, 38.98% id in 177 aa
YP_051103.1	phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel
YP_051104.1	Similar to Escherichia coli trehalose-6-phosphate hydrolase TreC or OlgH or b4239 SWALL:TREC_ECOLI (SWALL:P28904) (551 aa) fasta scores: E(): 1.1e-171, 70.05% id in 551 aa
YP_051105.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa
YP_051106.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051107.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051108.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_051109.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051110.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051111.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051112.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051113.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051114.1	shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase
YP_051115.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051116.1	NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms
YP_051117.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_051118.1	Catalyzes the transfer of electrons from NADH to quinone
YP_051119.1	Similar to Vibrio cholerae hypothetical protein Vc2680 SWALL:Q9KNQ1 (EMBL:AE004333) (47 aa) fasta scores: E(): 7, 44.44% id in 27 aa. Also identical to ECA3031
YP_051120.1	Previously sequenced in Pectobacterium carotovorum subsp. atrosepticum as HexA SWALL:O85276 (EMBL:AF057064) (316 aa) fasta scores: E(): 4.1e-120, 99.68% id in 316 aa, and similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SWALL:PECT_ERWCH (SWALL:P52662) (316 aa) fasta scores: E(): 6.8e-95, 79.36% id in 315 aa. Also identical to ECA3032
YP_051121.1	Similar to Vibrio cholerae hypothetical protein Vc2680 SWALL:Q9KNQ1 (EMBL:AE004333) (47 aa) fasta scores: E(): 7, 44.44% id in 27 aa. Also identical to ECA3029
YP_051122.1	Previously sequenced in Pectobacterium carotovorum subsp. atrosepticum as HexA SWALL:O85276 (EMBL:AF057064) (316 aa) fasta scores: E(): 4.1e-120, 99.68% id in 316 aa, and similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SWALL:PECT_ERWCH (SWALL:P52662) (316 aa) fasta scores: E(): 6.8e-95, 79.36% id in 315 aa. Also identical to ECA3030
YP_051123.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_051124.1	Similar to Yersinia pestis hypothetical protein ypo2559/y1627 ypo2559 or y1627 SWALL:YP59_YERPE (SWALL:Q8ZDK3) (197 aa) fasta scores: E(): 9.8e-62, 85.56% id in 194 aa, and to Photorhabdus temperata b2291 SWALL:AAN08356 (EMBL:AY137386) (199 aa) fasta scores: E(): 4.2e-61, 83.33% id in 198 aa
YP_051125.1	Similar to Yersinia pestis  ion transport protein ypo2561 SWALL:Q8ZDK1 (EMBL:AJ414152) (610 aa) fasta scores: E(): 1e-192, 80.65% id in 610 aa, and to Photorhabdus temperata YfbS SWALL:AAN08357 (EMBL:AY137386) (585 aa) fasta scores: E(): 5.6e-181, 78.63% id in 585 aa
YP_051126.2	Similar to Yersinia pestis  haloacid dehalogenase-like hydrolase ypo2562 or y1625 SWALL:AAM85194 (EMBL:AJ414152) (220 aa) fasta scores: E(): 1.3e-56, 69.9% id in 216 aa, and to Shigella flexneri phosphatase yfbt or sf2369 SWALL:AAN43882 (EMBL:AE015253) (216 aa) fasta scores: E(): 1.4e-55, 68.83% id in 215 aa
YP_051127.1	Similar to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yfbu or stm2335 or sty2565 SWALL:Q8XGJ0 (EMBL:AE008805) (164 aa) fasta scores: E(): 4.1e-58, 87.19% id in 164 aa, and to Yersinia pestis hypothetical protein Ypo2563 SWALL:Q8ZDJ9 (EMBL:AJ414152) (164 aa) fasta scores: E(): 8.8e-58, 82.92% id in 164 aa
YP_051128.1	Similar to Yersinia pestis hypothetical protein ypo2564 or y1623 SWALL:YP64_YERPE (SWALL:Q8ZDJ8) (151 aa) fasta scores: E(): 2.9e-52, 79.47% id in 151 aa, and to Photorhabdus temperata b2295 SWALL:AAN08358 (EMBL:AY137386) (151 aa) fasta scores: E(): 1.6e-45, 69.53% id in 151 aa
YP_051129.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_051130.1	catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate
YP_051131.1	Similar to Agrobacterium tumefaciens hypothetical protein atu1921 or agr_c_3514 SWALL:Q8UE42 (EMBL:AE009146) (298 aa) fasta scores: E(): 8.5e-88, 72.9% id in 262 aa, and to Pasteurella multocida hypothetical protein Pm1172 SWALL:Q9CLP5 (EMBL:AE006157) (281 aa) fasta scores: E(): 4.8e-85, 73.74% id in 259 aa
YP_051132.1	Similar to Yersinia pestis  NUDIX hydrolase ypo2781 or y1614 SWALL:YR81_YERPE (SWALL:Q8ZD12) (182 aa) fasta scores: E(): 1.1e-56, 80.66% id in 181 aa, and to Salmonella typhimurium, and Salmonella typhi  NUDIX hydrolase yfcd or stm2346 or sty2576 SWALL:YFCD_SALTY (SWALL:Q8XFF7) (184 aa) fasta scores: E(): 1.4e-55, 82.08% id in 173 aa
YP_051133.1	Similar to Salmonella typhimurium, and Salmonella typhi  phosphoesterase yfce or stm2347 or sty2577 SWALL:Q8XGM7 (EMBL:AE008805) (183 aa) fasta scores: E(): 5.3e-49, 71.27% id in 181 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yfce or b2300 or c2843 or z3562 or ecs3184 SWALL:YFCE_ECOLI (SWALL:P76495) (184 aa) fasta scores: E(): 1.1e-50, 72.37% id in 181 aa
YP_051134.1	Similar to Salmonella typhimurium  glutathione S-transferase yfcg or stm2349 SWALL:Q8ZNC9 (EMBL:AE008805) (215 aa) fasta scores: E(): 2.4e-60, 71.98% id in 207 aa, and to Escherichia coli hypothetical GST-like protein yfcg or b2302 SWALL:YFCG_ECOLI (SWALL:P77526) (215 aa) fasta scores: E(): 5.7e-59, 71.01% id in 207 aa
YP_051135.1	catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate
YP_051136.1	Similar to Yersinia pestis hypothetical protein Ypo2778 SWALL:Q8ZD15 (EMBL:AJ414153) (302 aa) fasta scores: E(): 1.1e-82, 71% id in 300 aa, and to Salmonella typhi hypothetical protein Sty2580 sty2580 SWALL:Q8Z512 (EMBL:AL627274) (297 aa) fasta scores: E(): 2.6e-78, 65.77% id in 298 aa
YP_051137.1	Similar to Escherichia coli histidine transport ATP-binding protein HisP or b2306 SWALL:HISP_ECOLI (SWALL:P07109) (257 aa) fasta scores: E(): 1.5e-73, 82.87% id in 257 aa
YP_051138.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri histidine transport system permease protein HisM or b2307 or c2849 or z3569 or ecs3191 or sf2383 SWALL:HISM_ECOLI (SWALL:P20091) (238 aa) fasta scores: E(): 2.8e-79, 79.41% id in 238 aa
YP_051139.1	Similar to Escherichia coli histidine transport system permease protein HisQ or b2308 SWALL:HISQ_ECOLI (SWALL:P52094) (228 aa) fasta scores: E(): 3.5e-63, 74.44% id in 227 aa
YP_051140.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 1.8e-69, 73.28% id in 262 aa
YP_051141.1	catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate
YP_051142.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_051143.1	membrane protein required for colicin V production
YP_051144.1	Similar to Yersinia pestis  membrane protein DedD or ypo2770 SWALL:Q8ZD23 (EMBL:AJ414153) (240 aa) fasta scores: E(): 2.2e-30, 60.49% id in 243 aa, and to Escherichia coli DedD protein dedd or b2314 SWALL:DEDD_ECOLI (SWALL:P09549) (220 aa) fasta scores: E(): 1e-15, 58.97% id in 234 aa
YP_051145.1	Similar to Escherichia coli folc bifunctional protein [includes: folylpolyglutamate synthase and dihydrofolate synthase] FolC or DedC or b2315 SWALL:FOLC_ECOLI (SWALL:P08192) (422 aa) fasta scores: E(): 6e-112, 69.47% id in 416 aa
YP_051146.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_051147.1	Similar to Escherichia coli, and Escherichia coli O157:H7 deda protein DedA or b2317 or z3579 or ecs3201 SWALL:DEDA_ECOLI (SWALL:P09548) (219 aa) fasta scores: E(): 2.8e-75, 86.11% id in 216 aa, and to Salmonella typhimurium, and Salmonella typhi  DedA family protein or stm2367 or sty2598 SWALL:Q8XEL7 (EMBL:AE008806) (219 aa) fasta scores: E(): 1.5e-75, 86.11% id in 216 aa
YP_051148.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_051149.1	Similar to Shewanella violacea aspartate-semialdehyde dehydrogenase Asd SWALL:DHAS_SHEVI (SWALL:Q56734) (338 aa) fasta scores: E(): 1.3e-55, 45.1% id in 337 aa, and to Yersinia pestis aspartate-semialdehyde dehydrogenase Asd or ypo2765 or usg or y1598 SWALL:Q8ZD28 (EMBL:AJ414153) (336 aa) fasta scores: E(): 2.8e-104, 80.59% id in 335 aa
YP_051150.1	catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate
YP_051151.1	Similar to Yersinia pestis  membrane protein ypo2761 or y1595 SWALL:Q8ZD31 (EMBL:AJ414153) (305 aa) fasta scores: E(): 9.2e-76, 68.62% id in 290 aa, and to Pseudomonas putida membrane protein,  pp4853 SWALL:AAN70422 (EMBL:AE016792) (293 aa) fasta scores: E(): 2e-50, 48.62% id in 290 aa
YP_051152.1	Similar to Yersinia pestis  flagellar assembly regulatory protein, flk or ypo2760 or div or y1594 SWALL:AAM85163 (EMBL:AJ414153) (345 aa) fasta scores: E(): 6.1e-30, 39.47% id in 418 aa, and to Escherichia coli div protein div or b2321 SWALL:DIV_ECOLI (SWALL:P15286) (331 aa) fasta scores: E(): 3.4e-21, 31.19% id in 420 aa
YP_051153.1	FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_051154.1	catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules
YP_051155.1	Similar to Yersinia pestis hypothetical protein Ypo2755 SWALL:Q8ZD37 (EMBL:AJ414153) (92 aa) fasta scores: E(): 6.4e-25, 75% id in 92 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yfcl or b2325 or z3588 or ecs3209 SWALL:YFCL_ECOLI (SWALL:P76496) (92 aa) fasta scores: E(): 1.3e-20, 67.41% id in 89 aa
YP_051156.1	Similar to Salmonella typhimurium  cytoplasmic protein yfcm or stm2381 SWALL:Q8ZNB1 (EMBL:AE008807) (182 aa) fasta scores: E(): 5.4e-64, 77.9% id in 181 aa, and to Shigella flexneri  transporting ATPase yfcm or sf2402 SWALL:AAN43915 (EMBL:AE015256) (182 aa) fasta scores: E(): 6.4e-64, 77.9% id in 181 aa
YP_051157.1	Similar to Yersinia pestis  membrane protein ypo2753 or y1587 SWALL:Q8ZD39 (EMBL:AJ414153) (268 aa) fasta scores: E(): 2e-74, 73.48% id in 264 aa, and to Salmonella typhimurium, and Salmonella typhi  permease yfca or stm2382 or sty2614 SWALL:Q8XEQ5 (EMBL:AE008807) (269 aa) fasta scores: E(): 5.2e-72, 71.37% id in 262 aa
YP_051158.1	D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm
YP_051159.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_051160.1	involved in methylation of ribosomal protein L3
YP_051161.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yfcn or b2331 or c2877 or sf2406 SWALL:YFCN_ECOLI (SWALL:P77458) (183 aa) fasta scores: E(): 2.2e-54, 73.71% id in 175 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical protein yfcn or stm2386 or sty2618 SWALL:YFCN_SALTY (SWALL:Q8XFE8) (183 aa) fasta scores: E(): 3e-54, 73.14% id in 175 aa
YP_051162.1	Similar to Escherichia coli phosphohistidine phosphatase SixA or b2340 SWALL:SIXA_ECOLI (SWALL:P76502) (161 aa) fasta scores: E(): 6.1e-35, 66.02% id in 156 aa
YP_051163.1	Similar to Myxococcus xanthus protein U precursor Pru SWALL:PRU_MYXXA (SWALL:P27755) (179 aa) fasta scores: E(): 1.8e-07, 29.57% id in 186 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4648 SWALL:Q9HVE4 (EMBL:AE004879) (182 aa) fasta scores: E(): 4.5e-18, 39.78% id in 186 aa
YP_051164.1	Similar to Yersinia pestis  exported protein ypo1698 SWALL:Q8ZFK5 (EMBL:AJ414150) (185 aa) fasta scores: E(): 3.6e-15, 33.88% id in 180 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4650 SWALL:Q9HVE2 (EMBL:AE004879) (180 aa) fasta scores: E(): 7.9e-30, 55.26% id in 152 aa
YP_051165.1	Similar to Pseudomonas aeruginosa probable pili assembly chaperone pa4651 SWALL:Q9HVE1 (EMBL:AE004879) (262 aa) fasta scores: E(): 1.3e-45, 49.78% id in 237 aa, and to Pseudomonas putida type 1 pili usher pathway chaperone CsuC or pp2361 SWALL:AAN67974 (EMBL:AE016782) (264 aa) fasta scores: E(): 8.6e-40, 45.6% id in 239 aa
YP_051166.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa4652 SWALL:Q9HVE0 (EMBL:AE004879) (790 aa) fasta scores: E(): 1.3e-148, 51.74% id in 775 aa, and to Pseudomonas putida type 1 pili usher protein CsuD or pp2362 SWALL:AAN67975 (EMBL:AE016782) (797 aa) fasta scores: E(): 1.6e-125, 43.44% id in 778 aa
YP_051167.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa4653 SWALL:Q9HVD9 (EMBL:AE004879) (315 aa) fasta scores: E(): 3.6e-55, 47.2% id in 322 aa, and to Yersinia pestis  membrane protein ypo1695 or y1857 SWALL:Q8ZFK8 (EMBL:AJ414150) (329 aa) fasta scores: E(): 7.2e-33, 36.95% id in 341 aa
YP_051168.1	multifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities: forms a heterotetramer with FadI; similar to FadA2B2 complex; involved in the anaerobic degradation of long and medium-chain fatty acids in the presence of nitrate
YP_051169.1	FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth
YP_051170.1	Similar to Yersinia pestis hypothetical protein Ypo2745 SWALL:Q8ZD47 (EMBL:AJ414153) (98 aa) fasta scores: E(): 5.1e-27, 74.48% id in 98 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yfcz or b2343 or c2888 SWALL:YFCZ_ECOLI (SWALL:P76504) (94 aa) fasta scores: E(): 7.5e-25, 69.14% id in 94 aa
YP_051171.1	Similar to Escherichia coli long-chain fatty acid transport protein precursor FadL or Ttr or b2344 SWALL:FADL_ECOLI (SWALL:P10384) (448 aa) fasta scores: E(): 1.4e-45, 64.25% id in 456 aa, and to Yersinia pestis long-chain fatty acid transport protein FadL or ypo2744 SWALL:Q8ZD48 (EMBL:AJ414153) (423 aa) fasta scores: E(): 2.5e-128, 72.19% id in 428 aa
YP_051172.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_051173.1	Similar to Shigella flexneri VacJ lipoprotein precursor VacJ or sf2424 SWALL:VACJ_SHIFL (SWALL:P43262) (251 aa) fasta scores: E(): 1.2e-75, 71.71% id in 251 aa, and to Yersinia pestis vacj lipoprotein VacJ or ypo2743 SWALL:Q8ZD49 (EMBL:AJ414153) (254 aa) fasta scores: E(): 3.3e-80, 76.68% id in 253 aa
YP_051174.1	Similar to Salmonella typhi  membrane protein sty2625 SWALL:Q8Z4Y7 (EMBL:AL627274) (313 aa) fasta scores: E(): 4.1e-76, 65.06% id in 312 aa, and to Escherichia coli O157:H7  transport yfdc or z3611 or ecs3230 SWALL:Q8XCN1 (EMBL:AE005466) (310 aa) fasta scores: E(): 8.4e-76, 66% id in 300 aa
YP_051175.1	Similar to Synechocystis sp. hypothetical protein Slr1025 SWALL:YA25_SYNY3 (SWALL:P73136) (112 aa) fasta scores: E(): 2.2e-12, 45.37% id in 108 aa, and to Streptococcus agalactiae hypothetical protein gbs1656 SWALL:CAD47315 (EMBL:AL766852) (92 aa) fasta scores: E(): 7.9, 29.11% id in 79 aa
YP_051176.1	Similar to Vibrio cholerae acetyltransferase, vca0479 and vca0400 SWALL:Q9K2Q6 (EMBL:AE004379) (151 aa) fasta scores: E(): 0.00011, 27.53% id in 138 aa, and to Ralstonia solanacearum hypothetical protein rsc0120 or rs00990 SWALL:Q8Y361 (EMBL:AL646057) (164 aa) fasta scores: E(): 0.00012, 31.03% id in 145 aa
YP_051177.1	Similar to Phytophthora parasitica necrosis-inducing protein Npp1 SWALL:Q9AT28 (EMBL:AF352031) (237 aa) fasta scores: E(): 1.9e-07, 31.1% id in 209 aa, and to Vibrio sp. CH-291 hypothetical 29.6 kDa protein SWALL:Q93IK1 (EMBL:AJ314791) (261 aa) fasta scores: E(): 9.1e-59, 55.98% id in 259 aa, and to Fusarium oxysporum f. sp. erythroxyli necrosis and ethylene inducing peptide Nep1 SWALL:O42737 (EMBL:AF036580) (253 aa) fasta scores: E(): 3.4e-06, 27.27% id in 231 aa
YP_051178.1	Weakly similar to Influenzavirus A neuraminidase SWALL:Q67222 (EMBL:D31948) (470 aa) fasta scores: E(): 10, 19.24% id in 265 aa
YP_051180.1	Weakly similar to the C-terminal region of Pseudomonas putida transcriptional regulator, cro/ci family pp0852 SWALL:AAN66477 (EMBL:AE016777) (335 aa) fasta scores: E(): 7.3, 28.69% id in 115 aa
YP_051181.1	Similar to Ralstonia solanacearum hypothetical protein rsc1344 or rs02866 SWALL:Q8XZQ1 (EMBL:AL646064) (222 aa) fasta scores: E(): 2.8e-26, 42.35% id in 170 aa, and to Brucella suis conserved hypothetical protein br0845 SWALL:AAN29774 (EMBL:AE014388) (188 aa) fasta scores: E(): 3.5e-21, 33.88% id in 180 aa
YP_051182.1	exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA
YP_051183.1	Similar to Salmonella typhimurium molybdenum-binding periplasmic protein stm3141 SWALL:Q8ZM20 (EMBL:AE008844) (236 aa) fasta scores: E(): 1e-26, 40.25% id in 236 aa, and to Pasteurella multocida hypothetical protein Pm1146 SWALL:YB46_PASMU (SWALL:P57911) (241 aa) fasta scores: E(): 2e-26, 37.65% id in 239 aa
YP_051184.1	Similar to Haemophilus influenzae hypothetical ABC transporter ATP-binding protein Hi1470 SWALL:YE70_HAEIN (SWALL:Q57399) (253 aa) fasta scores: E(): 9.5e-36, 46.12% id in 245 aa, and to Pasteurella multocida hypothetical protein Pm1147 SWALL:Q9CLR4 (EMBL:AE006155) (246 aa) fasta scores: E(): 1.2e-38, 47.22% id in 252 aa
YP_051185.1	Similar to Haemophilus influenzae hypothetical ABC transporter permease protein Hi1471 SWALL:YE71_HAEIN (SWALL:Q57130) (337 aa) fasta scores: E(): 3e-65, 53.86% id in 336 aa, and to Pasteurella multocida hypothetical protein Pm1148 SWALL:Q9CLR3 (EMBL:AE006155) (340 aa) fasta scores: E(): 7.2e-70, 57.44% id in 329 aa
YP_051186.1	Similar to Salmonella typhi possible ABC-transport protein, periplasmic-binding component sty3313 SWALL:Q8Z3R3 (EMBL:AL627277) (350 aa) fasta scores: E(): 6.1e-84, 64.84% id in 347 aa, and to Pasteurella multocida hypothetical protein Pm1149 SWALL:Q9CLR2 (EMBL:AE006155) (350 aa) fasta scores: E(): 3.1e-90, 71.85% id in 334 aa
YP_051187.1	Similar to Agrobacterium tumefaciens monooxygenase atu4121 or agr_l_1468 SWALL:Q8U8H1 (EMBL:AE009343) (340 aa) fasta scores: E(): 2.4e-113, 82.94% id in 340 aa, and to Brucella melitensis alkanal monooxygenase alpha chain bmei0017 SWALL:Q8YJR5 (EMBL:AE009445) (340 aa) fasta scores: E(): 6.4e-113, 82.05% id in 340 aa
YP_051188.1	Similar to Erwinia carotovora type 4 prepilin-like proteins leader peptide processing enzyme OutO SWALL:LEP4_ERWCA (SWALL:P31712) (279 aa) fasta scores: E(): 1.8e-104, 89.71% id in 282 aa, and to Erwinia chrysanthemi type 4 prepilin-like proteins leader peptide processing enzyme OutO SWALL:LEP4_ERWCH (SWALL:P31711) (283 aa) fasta scores: E(): 4.6e-73, 61.51% id in 278 aa
YP_051189.1	Similar to Erwinia carotovora general secretion pathway protein N OutN SWALL:GSPN_ERWCA (SWALL:P31710) (248 aa) fasta scores: E(): 3e-88, 88.71% id in 248 aa, and to Klebsiella pneumoniae general secretion pathway protein N PulN SWALL:GSPN_KLEPN (SWALL:P15753) (252 aa) fasta scores: E(): 2.5e-26, 35.88% id in 248 aa
YP_051190.1	Similar to Erwinia carotovora general secretion pathway protein M OutM SWALL:GSPM_ERWCA (SWALL:P31709) (164 aa) fasta scores: E(): 6.7e-54, 87.19% id in 164 aa, and to Erwinia chrysanthemi general secretion pathway protein M OutM SWALL:GSPM_ERWCH (SWALL:Q47422) (161 aa) fasta scores: E(): 3.1e-28, 52.5% id in 160 aa
YP_051191.1	Similar to Erwinia carotovora general secretion pathway protein L OutL SWALL:GSPL_ERWCA (SWALL:P31708) (425 aa) fasta scores: E(): 3e-165, 94.11% id in 425 aa, and to Erwinia chrysanthemi general secretion pathway protein L OutL SWALL:GSPL_ERWCH (SWALL:P31707) (399 aa) fasta scores: E(): 9.7e-44, 53.51% id in 398 aa
YP_051192.1	Similar to Erwinia carotovora general secretion pathway protein K OutK SWALL:GSPK_ERWCA (SWALL:P31706) (328 aa) fasta scores: E(): 5.7e-125, 95.12% id in 328 aa, and to Erwinia chrysanthemi general secretion pathway protein K OutK SWALL:GSPK_ERWCH (SWALL:P24690) (354 aa) fasta scores: E(): 8.7e-44, 50.69% id in 359 aa
YP_051193.1	Similar to Erwinia carotovora general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCA (SWALL:P31589) (216 aa) fasta scores: E(): 1e-74, 95.96% id in 198 aa, and to Erwinia chrysanthemi general secretion pathway protein J precursor OutJ SWALL:GSPJ_ERWCH (SWALL:P24689) (206 aa) fasta scores: E(): 3.8e-43, 60.82% id in 194 aa
YP_051194.1	Similar to Erwinia carotovora general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCA (SWALL:P31588) (121 aa) fasta scores: E(): 1.4e-44, 94.21% id in 121 aa, and to Erwinia chrysanthemi general secretion pathway protein I precursor OutI SWALL:GSPI_ERWCH (SWALL:P24688) (125 aa) fasta scores: E(): 3.3e-27, 59.32% id in 118 aa
YP_051195.1	Similar to Erwinia carotovora general secretion pathway protein H precursor OutH SWALL:GSPH_ERWCA (SWALL:P31587) (188 aa) fasta scores: E(): 1.7e-68, 92.02% id in 188 aa, and to Erwinia chrysanthemi general secretion pathway protein H precursor OutH SWALL:GSPH_ERWCH (SWALL:P24687) (181 aa) fasta scores: E(): 7.3e-32, 52.24% id in 178 aa
YP_051196.1	Similar to Erwinia carotovora general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCA (SWALL:P31586) (156 aa) fasta scores: E(): 2.3e-51, 97.88% id in 142 aa, and to Erwinia chrysanthemi general secretion pathway protein G precursor OutG SWALL:GSPG_ERWCH (SWALL:P31585) (153 aa) fasta scores: E(): 1.9e-42, 85.07% id in 134 aa
YP_051197.1	Similar to Erwinia carotovora general secretion pathway protein F OutF SWALL:GSPF_ERWCA (SWALL:P31705) (408 aa) fasta scores: E(): 7.6e-150, 96.56% id in 408 aa, and to Erwinia chrysanthemi general secretion pathway protein F OutF SWALL:GSPF_ERWCH (SWALL:P31704) (404 aa) fasta scores: E(): 1.2e-116, 77.39% id in 407 aa
YP_051198.1	Similar to Erwinia carotovora general secretion pathway protein E OutE SWALL:GSPE_ERWCA (SWALL:P31703) (498 aa) fasta scores: E(): 8e-167, 96.78% id in 498 aa, and to Erwinia chrysanthemi general secretion pathway protein E OutE SWALL:GSPE_ERWCH (SWALL:P31702) (498 aa) fasta scores: E(): 1.8e-140, 80.32% id in 498 aa
YP_051199.1	Similar to Erwinia carotovora general secretion pathway protein D precursor OutD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 3e-215, 92.76% id in 650 aa, and to Klebsiella pneumoniae general secretion pathway protein D precursor PulD SWALL:GSPD_KLEPN (SWALL:P15644) (660 aa) fasta scores: E(): 1.9e-173, 74.31% id in 654 aa
YP_051200.1	Similar to Erwinia carotovora general secretion pathway protein C OutC SWALL:GSPC_ERWCA (SWALL:P31699) (285 aa) fasta scores: E(): 6.4e-96, 91.63% id in 287 aa, and to Erwinia chrysanthemi general secretion pathway protein C OutC SWALL:GSQC_ERWCH (SWALL:Q01564) (272 aa) fasta scores: E(): 1.5e-49, 52.01% id in 273 aa
YP_051201.1	Similar to Erwinia chrysanthemi exo-poly-alpha-D-galacturonosidase precursor PehX SWALL:PEHX_ERWCH (SWALL:P15922) (602 aa) fasta scores: E(): 1e-59, 48.5% id in 635 aa, and to Klebsiella oxytoca polygalacturonase PehX SWALL:Q8VP71 (EMBL:AY065648) (658 aa) fasta scores: E(): 2.7e-155, 60.63% id in 658 aa
YP_051202.1	Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa
YP_051203.1	Similar to Erwinia chrysanthemi general secretion pathway protein B OutB SWALL:GSPB_ERWCH (SWALL:Q01563) (220 aa) fasta scores: E(): 8.7e-15, 42.85% id in 217 aa, and to Klebsiella pneumoniae general secretion pathway protein B PulB SWALL:GSPB_KLEPN (SWALL:P20725) (174 aa) fasta scores: E(): 1.5e-12, 38.06% id in 176 aa
YP_051204.1	Similar to Erwinia chrysanthemi OutS lipoprotein precursor OutS SWALL:OUTS_ERWCH (SWALL:Q01567) (133 aa) fasta scores: E(): 4.7e-24, 54.07% id in 135 aa, and to Klebsiella pneumoniae pullulanase secretion protein PulS precursor PulS SWALL:PULS_KLEPN (SWALL:P20440) (125 aa) fasta scores: E(): 7.5e-16, 47.93% id in 121 aa
YP_051205.1	Similar to Yersinia pestis  aminotransferase ypo2975 or y1507 SWALL:AAM85078 (EMBL:AJ414154) (411 aa) fasta scores: E(): 4.2e-150, 92.57% id in 404 aa, and to Escherichia coli hypothetical aminotransferase yfdz or b2379 SWALL:YFDZ_ECOLI (SWALL:P77434) (412 aa) fasta scores: E(): 7.1e-147, 90.32% id in 403 aa
YP_051206.1	Similar to Rhizobium loti probable muconate cycloisomerase mlr0803 SWALL:Q98LZ8 (EMBL:AP002995) (327 aa) fasta scores: E(): 7.8e-64, 52.97% id in 319 aa, and to Brucella suis mandelate racemase/muconate lactonizing enzyme family protein br1018 SWALL:AAN29940 (EMBL:AE014403) (326 aa) fasta scores: E(): 1.2e-63, 52.94% id in 323 aa
YP_051207.1	Similar to Staphylococcus haemolyticus D-alanine aminotransferase Dat SWALL:DAAA_STAHA (SWALL:P54694) (282 aa) fasta scores: E(): 4.8e-36, 38.57% id in 280 aa, and to Agrobacterium tumefaciens D-alanine aminotransferase Dat or atu5473 or agr_pat_698 SWALL:Q8UJK4 (EMBL:AE008968) (290 aa) fasta scores: E(): 6.7e-61, 55.39% id in 278 aa
YP_051208.1	Similar to Pseudomonas putida membrane protein, pp0707 SWALL:AAN66332 (EMBL:AE016776) (855 aa) fasta scores: E(): 7.4e-106, 43.1% id in 798 aa, and to Xanthomonas campestris hypothetical protein Xcc0402 SWALL:Q8PDD8 (EMBL:AE012136) (821 aa) fasta scores: E(): 4e-50, 30.14% id in 806 aa, and to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 1.5e-22, 22.75% id in 813 aa
YP_051210.1	Similar to Escherichia coli type i restriction enzyme EcoEI specificity protein HsdS or Hss SWALL:T1SE_ECOLI (SWALL:P19705) (594 aa) fasta scores: E(): 4.7e-62, 44.05% id in 606 aa, and to Salmonella enterica styski methylase HsdS SWALL:P95733 (EMBL:Y11005) (587 aa) fasta scores: E(): 6.2e-57, 40.95% id in 608 aa
YP_051211.1	Similar to Escherichia coli type I restriction enzyme EcoEI M protein HsdM SWALL:T1ME_ECOLI (SWALL:Q47282) (490 aa) fasta scores: E(): 6.2e-193, 97.55% id in 490 aa, and to Salmonella enterica styski methylase HsdM SWALL:P95732 (EMBL:Y11005) (493 aa) fasta scores: E(): 2e-178, 89.38% id in 490 aa
YP_051212.1	Similar to Escherichia coli type I restriction enzyme EcoEI R protein HsdR or Hsr SWALL:T1RE_ECOLI (SWALL:Q47281) (813 aa) fasta scores: E(): 0, 94.71% id in 813 aa, and to Pseudomonas putida type I restriction-modification system, R subunit hsdr or pp4740 SWALL:AAN70312 (EMBL:AE016791) (787 aa) fasta scores: E(): 3.5e-149, 61.76% id in 803 aa
YP_051214.1	Similar to Salmonella typhi hypothetical protein Sty3182 SWALL:Q8Z3Y7 (EMBL:AL627277) (132 aa) fasta scores: E(): 5.7e-05, 57.5% id in 40 aa, and to Shigella flexneri, and Shigella flexneri 2a  stborf2 stborf2 or mvpA SWALL:O06662 (EMBL:U82621) (132 aa) fasta scores: E(): 0.00041, 55% id in 40 aa
YP_051215.1	Similar to Agrobacterium tumefaciens hypothetical protein atu3824 or agr_l_2017 SWALL:Q8U9A4 (EMBL:AE009313) (327 aa) fasta scores: E(): 1.1e-98, 76.14% id in 327 aa, and to Vibrio vulnificus conserved hypothetical protein vv20997 SWALL:AAO07909 (EMBL:AE016811) (366 aa) fasta scores: E(): 5.4e-97, 75.61% id in 324 aa
YP_051216.1	catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate
YP_051217.1	Similar to Bos taurus acyl carrier protein, mitochondrial ndufab1 SWALL:ACPM_BOVIN (SWALL:P52505) (88 aa) fasta scores: E(): 0.18, 27.94% id in 68 aa, and to Fusobacterium nucleatum acyl carrier protein acpp or fn0150 SWALL:ACP_FUSNN (SWALL:Q8RGX5) (75 aa) fasta scores: E(): 1.9, 30.66% id in 75 aa
YP_051218.1	Similar to Staphylococcus aureus D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or mw0814 SWALL:DLTA_STAAW (SWALL:Q9S673) (485 aa) fasta scores: E(): 1.8e-42, 37.15% id in 471 aa, and to Lactococcus lactis D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or ll1261 SWALL:DLTA_LACLA (SWALL:Q9CG49) (499 aa) fasta scores: E(): 1.3e-37, 32.03% id in 487 aa
YP_051219.1	Similar to Bacillus subtilis protein DltB or ipa-4R SWALL:DLTB_BACSU (SWALL:P39580) (395 aa) fasta scores: E(): 3.9e-24, 31% id in 400 aa, and to Staphylococcus epidermidis DltB membrane protein se0625 SWALL:AAO04222 (EMBL:AE016746) (404 aa) fasta scores: E(): 1.1e-23, 28.9% id in 346 aa
YP_051220.1	Similar to Staphylococcus aureus, and Staphylococcus aureus  exoprotein DltD or mw0817 SWALL:Q9S674 (EMBL:AF101234) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa, and to Staphylococcus aureus poly(glycerophosphate chain) D-alanine transfer protein DltD or sav0935 or sa0796 SWALL:Q99VE6 (EMBL:AP003360) (391 aa) fasta scores: E(): 0.028, 20.97% id in 391 aa
YP_051224.1	Similar to Yersinia pestis  lysr-family transcriptional regulatory protein ptxr or ypo2807 or y1123 SWALL:Q8ZCZ5 (EMBL:AJ414153) (297 aa) fasta scores: E(): 4.2e-79, 68.47% id in 295 aa, and to Escherichia coli O6 hypothetical transcriptional regulator ycjz c0412 SWALL:Q8FKK6 (EMBL:AE016756) (322 aa) fasta scores: E(): 6.1e-77, 66.44% id in 295 aa
YP_051225.1	Similar to Xanthomonas axonopodis hypothetical protein Xac2840 SWALL:Q8PIQ5 (EMBL:AE011925) (130 aa) fasta scores: E(): 5.5e-34, 69.29% id in 127 aa, and to Bradyrhizobium japonicum Bll4598 protein bll4598 SWALL:BAC49863 (EMBL:AP005951) (203 aa) fasta scores: E(): 5.9e-33, 66.41% id in 131 aa
YP_051226.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 3.9e-10, 41.23% id in 97 aa, and to Yersinia pestis PTS system, cellobiose-specific IIa component CelC or ypo2680 or y1253 SWALL:AAM84827 (EMBL:AJ414153) (115 aa) fasta scores: E(): 3.6e-12, 45.91% id in 98 aa
YP_051227.1	Similar to Serratia marcescens iron(III)-binding periplasmic protein precursor SfuA SWALL:SFUA_SERMA (SWALL:P21408) (338 aa) fasta scores: E(): 1.3e-102, 82.84% id in 338 aa, and to Yersinia enterocolitica YfuA SWALL:Q56925 (EMBL:Z47200) (338 aa) fasta scores: E(): 4.7e-99, 80.17% id in 338 aa
YP_051228.1	Similar to Serratia marcescens iron(III)-transport system permease protein SfuB SWALL:SFUB_SERMA (SWALL:P21409) (527 aa) fasta scores: E(): 7.3e-141, 71.29% id in 526 aa, and to Yersinia pestis iron(III)-transport system permease protein SfuB or ypo2959 SWALL:Q8ZCM3 (EMBL:AJ414154) (528 aa) fasta scores: E(): 2.2e-139, 70.61% id in 524 aa
YP_051229.1	Similar to Serratia marcescens iron(III)-transport ATP-binding protein SfuC SWALL:SFUC_SERMA (SWALL:P21410) (345 aa) fasta scores: E(): 3.5e-64, 59.59% id in 344 aa, and to Yersinia pestis iron(III)-transport ATP-binding protein SfuC or ypo2960 or yfuc or y1524 SWALL:AAM85095 (EMBL:AJ414154) (349 aa) fasta scores: E(): 8.4e-65, 57.92% id in 347 aa
YP_051230.1	Similar to Yersinia pseudotuberculosis hypothetical protein YfbJ SWALL:YFBJ_YERPS (SWALL:Q93PD4) (128 aa) fasta scores: E(): 1e-20, 52.5% id in 120 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3558 SWALL:YZ58_PSEAE (SWALL:Q9HY59) (137 aa) fasta scores: E(): 3e-11, 41.73% id in 127 aa
YP_051231.1	Similar to Yersinia pestis, and Yersinia pseudotuberculosis  membrane protein ypo2417 SWALL:Q93PD5 (EMBL:AJ414152) (114 aa) fasta scores: E(): 1e-20, 57.79% id in 109 aa, and to Salmonella typhimurium hypothetical protein yfbw or stm2302 SWALL:YFBW_SALTY (SWALL:O52328) (111 aa) fasta scores: E(): 6.8e-14, 48.18% id in 110 aa
YP_051232.1	catalyzes the addition of 4-amino-4-deoxy-L-arabinose to lipid A
YP_051233.1	Similar to Yersinia pestis, and Yersinia pseudotuberculosis hypothetical protein ypo2419 or y1920 SWALL:Q93PD7 (EMBL:AJ414152) (301 aa) fasta scores: E(): 7.1e-88, 68.24% id in 296 aa, and to Salmonella typhimurium hypothetical protein yfbh or stm2300 SWALL:YFBH_SALTY (SWALL:O52326) (299 aa) fasta scores: E(): 7.7e-76, 62.92% id in 294 aa
YP_051234.1	Bifunctional polymyxin resistance arnA protein; catalyzes the decarboxylation of UDP-glucuronic acid to UDP-4-keto-arabinose and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose to form UDP-L-4-formamido-arabinose; active in certain mutant strains
YP_051235.1	catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate
YP_051236.1	catalyzes the conversion of UDP-4-keto-arabinose to UDP-4-amino-4-deoxy-L-arabinose
YP_051237.1	Similar to Escherichia coli UDP-glucose 6-dehydrogenase Ugd or b2028 SWALL:UDG_ECOLI (SWALL:P76373) (388 aa) fasta scores: E(): 2.4e-110, 73.96% id in 388 aa, and to Vibrio cholerae nucleotide sugar dehydrogenase SWALL:Q56625 (EMBL:U47057) (388 aa) fasta scores: E(): 1e-110, 72.93% id in 388 aa
YP_051238.1	Similar to Pseudomonas putida GGDEF domain protein pp3242 SWALL:AAN68849 (EMBL:AE016786) (522 aa) fasta scores: E(): 4.1e-67, 38.67% id in 499 aa, and to Xanthomonas campestris response regulator xcc3729 SWALL:Q8P4H8 (EMBL:AE012493) (349 aa) fasta scores: E(): 4.4e-44, 39.94% id in 358 aa
YP_051239.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_051240.1	Similar to Escherichia coli O6 hypothetical protein ybcj or c0644 SWALL:AAN79121 (EMBL:AE016757) (77 aa) fasta scores: E(): 3.2e-19, 79.41% id in 68 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein ybcj or stm0541 or sty0587 SWALL:Q8XG46 (EMBL:AE008721) (70 aa) fasta scores: E(): 5.8e-19, 77.94% id in 68 aa
YP_051241.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_051242.1	Similar to Chlorobium tepidum hypothetical protein Ct0748 SWALL:Q8KEE1 (EMBL:AE012845) (133 aa) fasta scores: E(): 6.3e-19, 46.21% id in 132 aa, and to Shewanella oneidensis conserved hypothetical protein so3319 SWALL:AAN56317 (EMBL:AE015770) (147 aa) fasta scores: E(): 1.9e-06, 33.84% id in 130 aa
YP_051243.1	Similar to Escherichia coli peptidyl-prolyl cis-trans isomerase B PpiB or b0525 SWALL:PPIB_ECOLI (SWALL:P23869) (164 aa) fasta scores: E(): 3.1e-53, 81.7% id in 164 aa
YP_051244.1	catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine
YP_051245.1	Catalyzes a step in the de novo purine nucleotide biosynthetic pathway
YP_051246.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_051247.1	Similar to Escherichia coli, and Escherichia coli O157:H7 serine transporter SdaC or DcrA or b2796 or z4113 or ecs3656 SWALL:SDAC_ECOLI (SWALL:P36559) (429 aa) fasta scores: E(): 8.6e-133, 78.68% id in 427 aa
YP_051248.1	Similar to Escherichia coli L-serine dehydratase 2 SdaB or b2797 SWALL:SDHM_ECOLI (SWALL:P30744) (455 aa) fasta scores: E(): 2.1e-132, 71.2% id in 455 aa. Also similar to ECA2380 (SdaA) (75.165% id. in 455 aa overlap)
YP_051249.1	Similar to Salmonella typhimurium  transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 3.8e-14, 38.68% id in 137 aa, and to Salmonella typhi  DNA-binding protein sty2429 SWALL:Q8Z5A0 (EMBL:AL627273) (129 aa) fasta scores: E(): 4.4e-14, 38.68% id in 137 aa
YP_051250.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_051251.1	Similar to Pseudomonas aeruginosa a transmembrane component of the phosphate specific transport complex PstA SWALL:Q51545 (EMBL:D45195) (513 aa) fasta scores: E(): 8.4e-82, 50.99% id in 502 aa, and to Yersinia pestis phosphate transport system permease PstA or ypo2834 SWALL:Q8ZCX4 (EMBL:AJ414153) (570 aa) fasta scores: E(): 3.2e-124, 65.88% id in 551 aa
YP_051252.1	Similar to Pseudomonas aeruginosa phosphate transport system permease protein PstC or pa5368 SWALL:Q51544 (EMBL:D45195) (677 aa) fasta scores: E(): 4e-85, 40.05% id in 674 aa, and to Yersinia pestis phosphate transport system permease PstC or ypo2835 or y1399 SWALL:Q8ZCX3 (EMBL:AJ414153) (749 aa) fasta scores: E(): 1.2e-107, 52.21% id in 745 aa
YP_051253.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_051254.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 exopolyphosphatase Ppx or b2502 or c3020 or z3765 or ecs3364 SWALL:PPX_ECOLI (SWALL:P29014) (512 aa) fasta scores: E(): 8.4e-153, 75.3% id in 498 aa
YP_051256.1	Similar to Xanthomonas axonopodis organic hydroperoxide resistance protein Ohr or xac0282 SWALL:OHR_XANAC (SWALL:O68390) (142 aa) fasta scores: E(): 7.1e-36, 71.94% id in 139 aa, and to Ralstonia solanacearum probable organic hydroperoxide resistance protein Ohr or rsp1107 or rs02615 SWALL:Q8XQW1 (EMBL:AL646082) (141 aa) fasta scores: E(): 2.7e-40, 77.3% id in 141 aa
YP_051257.1	Similar to Xanthomonas campestris transcriptional regulator OhrR SWALL:Q93R11 (EMBL:AF036166) (153 aa) fasta scores: E(): 1.2e-34, 69.06% id in 139 aa
YP_051258.1	Similar to Yersinia pestis  divalent cation transport protein MgtE or ypo2839 or y1395 SWALL:Q8ZCW9 (EMBL:AJ414153) (491 aa) fasta scores: E(): 4.4e-112, 66.05% id in 489 aa, and to Pseudomonas putida magnesium transporter MgtE or pp4471 SWALL:AAN70046 (EMBL:AE016790) (480 aa) fasta scores: E(): 7.8e-83, 49.08% id in 489 aa
YP_051259.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_051260.1	catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P
YP_051261.1	controls transcription of galETKM
YP_051262.1	porin involved in the transport of maltose and maltodextrins
YP_051263.1	Similar to Escherichia coli, and Escherichia coli O157:H7 maltose/maltodextrin transport ATP-binding protein MalK or b4035 or z5633 or ecs5018 SWALL:MALK_ECOLI (SWALL:P02914) (371 aa) fasta scores: E(): 1.1e-65, 53.48% id in 359 aa
YP_051264.1	Similar to Escherichia coli, and Escherichia coli O157:H7 maltose-binding periplasmic protein precursor MalE or b4034 or z5632 or ecs5017 SWALL:MALE_ECOLI (SWALL:P02928) (396 aa) fasta scores: E(): 3.4e-31, 31.18% id in 404 aa, and to Yersinia pestis  sugar-binding protein ypo0856 or y3241 SWALL:AAM86791 (EMBL:AJ414145) (420 aa) fasta scores: E(): 1.2e-97, 62.04% id in 411 aa
YP_051265.1	Similar to Escherichia coli maltose transport system permease protein MalF or b4033 SWALL:MALF_ECOLI (SWALL:P02916) (514 aa) fasta scores: E(): 5.9e-36, 39.71% id in 277 aa, and to Yersinia pestis  maltodextrin transport permease ypo0855 or MalF or y3240 SWALL:Q8ZHN5 (EMBL:AJ414145) (435 aa) fasta scores: E(): 6.8e-138, 81.86% id in 419 aa
YP_051266.1	Similar to Yersinia pestis  maltodextrin permease protein ypo0854 or MalG or y3239 SWALL:Q8ZHN6 (EMBL:AJ414145) (283 aa) fasta scores: E(): 9.1e-93, 83.98% id in 281 aa, and to Bacillus halodurans maltose/maltodextrin transport system bh2021 SWALL:Q9KBA7 (EMBL:AP001514) (283 aa) fasta scores: E(): 1.9e-77, 69.14% id in 282 aa
YP_051267.1	Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor GalA or GanA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 3.5e-35, 33.98% id in 409 aa, and to Yersinia pestis galactosidase ypo0853 or y3238 SWALL:Q8ZHN7 (EMBL:AJ414145) (400 aa) fasta scores: E(): 2.1e-117, 72.51% id in 393 aa
YP_051268.1	Similar to Clostridium perfringens beta-galactosidase Pbg SWALL:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 1.1e-160, 52.44% id in 675 aa, and to Yersinia pestis puative beta-galactosidase BgaB or ypo0852 or y3237 SWALL:Q8ZHN8 (EMBL:AJ414145) (686 aa) fasta scores: E(): 0, 70.26% id in 686 aa
YP_051269.1	Similar to Yersinia pestis PTS transport protein ypo0851 or y3236 SWALL:Q8ZHN9 (EMBL:AJ414145) (103 aa) fasta scores: E(): 9.9e-12, 57.14% id in 77 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 PTS system, glucose-specific iibc component ptsg or glca or umg or b1101 or c1373 or z1740 or ecs1479 SWALL:PTGB_ECOLI (SWALL:P05053) (477 aa) fasta scores: E(): 1.6e-10, 58.33% id in 72 aa
YP_051270.1	component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent
YP_051271.1	Similar to Pseudomonas aeruginosa probable oxidoreductase pa3795 SWALL:Q9HXK2 (EMBL:AE004798) (316 aa) fasta scores: E(): 1.6e-71, 64.55% id in 316 aa, and to Xanthomonas axonopodis oxidoreductase moca or xac0288 SWALL:Q8PQN5 (EMBL:AE011653) (323 aa) fasta scores: E(): 2.4e-69, 64.85% id in 313 aa
YP_051272.1	Similar to Escherichia coli, and Escherichia coli O6 nucleoside permease NupC or Cru or b2393 or c2932 SWALL:NUPC_ECOLI (SWALL:P33031) (400 aa) fasta scores: E(): 8e-112, 77.36% id in 402 aa
YP_051273.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate
YP_051274.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC which confers resistance against novobiocin and deoxycholate
YP_051275.1	Part of a tripartite efflux system composed of MdtA, MdtB and MdtC; confers resistance against novobiocin and deoxycholate
YP_051276.1	Similar to Escherichia coli  drug transporter MdtD SWALL:BAC06610 (EMBL:AB089190) (471 aa) fasta scores: E(): 6.9e-129, 74.02% id in 462 aa, and to Yersinia pestis membrane protein yegb or ypo2850 or y1383 SWALL:Q8ZCV8 (EMBL:AJ414154) (465 aa) fasta scores: E(): 1.2e-127, 73.92% id in 464 aa
YP_051277.1	Similar to Escherichia coli sensor protein BaeS or b2078 SWALL:BAES_ECOLI (SWALL:P30847) (467 aa) fasta scores: E(): 3.1e-113, 65.06% id in 458 aa
YP_051278.1	response regulator in two-component regulatory system with BaeS; regulator of RNA synthesis, flagellar biosynthesis, chemotaxis and transport
YP_051279.1	Similar to Yersinia enterocolitica streptogramin A acetyl transferase Sat SWALL:AAN77593 (EMBL:AF170730) (221 aa) fasta scores: E(): 3.9e-63, 72.72% id in 209 aa, and to Staphylococcus aureus Vat B vat B SWALL:Q57156 (EMBL:U19459) (212 aa) fasta scores: E(): 1.4e-51, 57.76% id in 206 aa
YP_051280.1	Similar to Pseudomonas putida acetyltransferase, GnaT family pp0820 SWALL:AAN66445 (EMBL:AE016777) (187 aa) fasta scores: E(): 1.9e-31, 48.57% id in 175 aa, and to Pseudomonas aeruginosa hypothetical protein Pa1472 SWALL:Q9I3P0 (EMBL:AE004576) (184 aa) fasta scores: E(): 3.5e-39, 61.76% id in 170 aa
YP_051281.1	Similar to Vibrio cholerae hypothetical protein Vc1096 SWALL:Q9KT09 (EMBL:AE004190) (315 aa) fasta scores: E(): 4.6e-66, 53.58% id in 321 aa, and to Pseudomonas putida glutathione s-transferase domain protein pp3998 SWALL:AAN69592 (EMBL:AE016788) (325 aa) fasta scores: E(): 6.4e-66, 54.95% id in 313 aa
YP_051282.1	Similar to Yersinia pestis  protease ypo2855 or y1379 SWALL:Q8ZCV5 (EMBL:AJ414154) (464 aa) fasta scores: E(): 9.6e-156, 84.92% id in 451 aa, and to Salmonella typhimurium, and Salmonella typhi  protease yegq or stm2136 or sty2365 SWALL:Q8XFD2 (EMBL:AE008795) (453 aa) fasta scores: E(): 1.8e-153, 83.48% id in 454 aa
YP_051283.1	cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role
YP_051284.1	Similar to Yersinia pestis PsiE protein homolog PsiE or ypo3717 or y0025 SWALL:Q8ZAS3 (EMBL:AJ414158) (135 aa) fasta scores: E(): 2.3e-39, 75.55% id in 135 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri PsiE protein PsiE or b4030 or c5001 or sf4175 SWALL:AAN45596 (EMBL:J02812) (136 aa) fasta scores: E(): 1.9e-35, 71.53% id in 130 aa
YP_051285.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_051286.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_051287.1	Similar to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yjgb or b4269 SWALL:YJGB_ECOLI (SWALL:P27250) (339 aa) fasta scores: E(): 2.9e-112, 83.18% id in 339 aa, and to Salmonella typhimurium  alcohol dehydrogenase yjgb or stm4486 SWALL:Q8ZK20 (EMBL:AE008910) (339 aa) fasta scores: E(): 6.8e-112, 83.48% id in 339 aa
YP_051288.1	Similar to Yersinia pestis HmsT or ypo0425 or y3756 SWALL:AAM87301 (EMBL:AF129277) (390 aa) fasta scores: E(): 1.1e-12, 28.21% id in 319 aa, and to Pseudomonas putida GGDEF domain protein pp3452 SWALL:AAN69054 (EMBL:AE016786) (363 aa) fasta scores: E(): 2.2e-12, 32.65% id in 245 aa
YP_051289.1	Similar to Listeria innocua hypothetical protein Lin1094 SWALL:Q92CS7 (EMBL:AL596167) (340 aa) fasta scores: E(): 1.5e-25, 30.51% id in 308 aa, and to Streptomyces coelicolor hypothetical protein sco3599 or sc66t3.10C SWALL:Q9XAK3 (EMBL:AL939117) (318 aa) fasta scores: E(): 2e-09, 30.41% id in 263 aa
YP_051290.1	Similar to Ralstonia solanacearum probable transmembrane protein rsp0190 or rs04702 SWALL:Q8XTC3 (EMBL:AL646077) (263 aa) fasta scores: E(): 1.9e-51, 58.87% id in 248 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2847 SWALL:Q9HZZ6 (EMBL:AE004711) (249 aa) fasta scores: E(): 1.7e-40, 46.69% id in 242 aa
YP_051291.1	Similar to Ralstonia solanacearum probable DNA-binding transcriptional regulatory transcription regulator protein rsc1196 or rs05728 SWALL:Q8Y048 (EMBL:AL646063) (306 aa) fasta scores: E(): 3.9e-42, 42.76% id in 297 aa, and to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1077 SWALL:Q8YB24 (EMBL:AE009740) (294 aa) fasta scores: E(): 2.7e-38, 39.51% id in 291 aa
YP_051292.1	Similar to Agrobacterium tumefaciens Agr_c_1524p agr_c_1524 SWALL:Q8U5H6 (EMBL:AE008016) (265 aa) fasta scores: E(): 3.8e-31, 41.78% id in 213 aa, and to Rhizobium meliloti hypothetical protein r00954 or smc00096 SWALL:Q92KJ4 (EMBL:AL591785) (245 aa) fasta scores: E(): 1.2e-30, 37.94% id in 253 aa
YP_051294.1	Similar to Bacillus sphaericus penicillin acylase SWALL:PAC_BACSH (SWALL:P12256) (338 aa) fasta scores: E(): 2.3e-07, 25.4% id in 307 aa, and to Agrobacterium tumefaciens choloylglycine hydrolase family protein atu4586 or agr_l_573 SWALL:Q8U768 (EMBL:AE009386) (355 aa) fasta scores: E(): 6.1e-56, 60.49% id in 367 aa, and to Clostridium perfringens choloylglycine hydrolase cbh or cpe0709 SWALL:CBH_CLOPE (SWALL:P54965) (329 aa) fasta scores: E(): 2.1e-05, 25.07% id in 315 aa
YP_051295.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or Sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 3.1e-15, 71.21% id in 66 aa. Also similar to ECA0513 (91.139% id. in 79 aa overlap), and to ECA0966 (85.714% id. in 70 aa overlap), and to ECA0686 (76.119% id. in 67 aa overlap.)
YP_051296.1	Similar to Yersinia pestis hypothetical protein ypo1734 or y2574 SWALL:AAM86129 (EMBL:AJ414150) (283 aa) fasta scores: E(): 2.6e-76, 70.31% id in 283 aa, and to Shewanella oneidensis rio1/zk632.3/mj0444 family,  so3973 SWALL:AAN56947 (EMBL:AE015828) (285 aa) fasta scores: E(): 4.1e-70, 65.37% id in 283 aa
YP_051297.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_051298.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_051299.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_051300.1	Similar to Erwinia carotovora extracellular metalloprotease precursor Prt1 SWALL:PRT1_ERWCA (SWALL:Q99132) (347 aa) fasta scores: E(): 1.4e-136, 95.1% id in 347 aa
YP_051302.1	Similar to Rhizobium meliloti  transcriptional regulator, AraC family protein rb0963 or smb21385 SWALL:Q92UX2 (EMBL:AL603645) (311 aa) fasta scores: E(): 9.2e-43, 42.9% id in 296 aa, and to Agrobacterium tumefaciens transcriptional regulator, AraC family atu2021 or agr_c_3663 SWALL:Q8UDU8 (EMBL:AE009153) (301 aa) fasta scores: E(): 3.2e-32, 36.17% id in 282 aa
YP_051303.1	Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 4.4e-24, 38.24% id in 251 aa, and to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc1730 or rs02918 SWALL:Q8XYM8 (EMBL:AL646066) (256 aa) fasta scores: E(): 1.8e-51, 59.91% id in 247 aa
YP_051304.1	Similar to Rhizobium meliloti hypothetical transmembrane protein smc02895 r00220 or smc02895 SWALL:Q92SX9 (EMBL:AL591782) (314 aa) fasta scores: E(): 1.8e-13, 25.72% id in 311 aa, and to Rickettsia prowazekii hypothetical protein Rp372 rp372 SWALL:Q9ZDF7 (EMBL:AJ235271) (323 aa) fasta scores: E(): 1.9e-13, 25.97% id in 308 aa
YP_051305.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_051306.1	with YaeT, YfiO, and NlpB forms a complex involved in outer membrane protein biogenesis
YP_051307.1	Similar to Yersinia pestis  membrane protein ypo2877 or y1355 SWALL:Q8ZCT7 (EMBL:AJ414154) (211 aa) fasta scores: E(): 3.2e-42, 61.13% id in 211 aa, and to Escherichia coli O6 hypothetical protein yfgm or c3035 SWALL:AAN81485 (EMBL:AE016764) (206 aa) fasta scores: E(): 1.8e-40, 57.56% id in 205 aa
YP_051308.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_051309.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_051310.1	Similar to Salmonella typhimurium paral  membrane protein yfga or stm2524 SWALL:Q8ZN53 (EMBL:AE008814) (334 aa) fasta scores: E(): 6.4e-54, 58.2% id in 335 aa, and to Escherichia coli O6 hypothetical protein yfga or c3038 SWALL:AAN81488 (EMBL:AE016764) (335 aa) fasta scores: E(): 8.1e-54, 58.03% id in 336 aa
YP_051311.1	Similar to Pseudomonas aeruginosa PilF protein SWALL:Q51526 (EMBL:L49434) (198 aa) fasta scores: E(): 4.5e-07, 28.4% id in 169 aa, and to Yersinia pestis fimbrial biogenesis protein ypo2881 or y1351 SWALL:Q8ZCT4 (EMBL:AJ414154) (249 aa) fasta scores: E(): 4.2e-62, 71.91% id in 235 aa
YP_051312.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_051313.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_051314.1	Similar to Klebsiella pneumoniae PTS system, alpha-glucoside-specific IIbc component AglA SWALL:PTAB_KLEPN (SWALL:Q9AGA7) (540 aa) fasta scores: E(): 2e-59, 37.28% id in 531 aa, and to Bacillus subtilis PTS system, arbutin-like IIbc component GlvC or GlvCB or Glv-2 SWALL:PTIB_BACSU (SWALL:P54715) (527 aa) fasta scores: E(): 1.9e-58, 35.79% id in 528 aa
YP_051315.1	Similar to Klebsiella pneumoniae 6-phospho-alpha-glucosidase AglB SWALL:AGLB_KLEPN (SWALL:Q9AGA6) (440 aa) fasta scores: E(): 2.2e-85, 50.11% id in 441 aa, and to Escherichia coli probable 6-phospho-alpha-glucosidase GlvG or b3681 SWALL:GLVG_ECOLI (SWALL:P31450) (212 aa) fasta scores: E(): 4.9e-41, 53.81% id in 210 aa
YP_051316.1	catalyzes the transfer of a sulfur ion to cyanide or to other thiol compounds
YP_051317.1	Similar to Oceanobacillus iheyensis transcriptional regulator ob0613 SWALL:BAC12569 (EMBL:AP004595) (282 aa) fasta scores: E(): 6e-11, 28.13% id in 263 aa, and to Haemophilus influenzae hypothetical protein Hi0143 hi0143 SWALL:Y143_HAEIN (SWALL:P44540) (288 aa) fasta scores: E(): 2.8e-09, 26.1% id in 226 aa
YP_051318.1	enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I
YP_051319.1	catalyzes the removal of an N-terminal amino acid from a peptide or arylamide
YP_051320.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yfhj or b2524 or z3791 or ecs3390 or sf2571 SWALL:AAN44070 (EMBL:M88654) (66 aa) fasta scores: E(): 3.5e-23, 83.33% id in 66 aa, and to Yersinia pestis hypothetical protein ypo2890 or y1341 SWALL:Q8ZCS7 (EMBL:AJ414154) (66 aa) fasta scores: E(): 6.1e-20, 76.56% id in 64 aa
YP_051321.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri ferredoxin, 2fe-2s Fdx or b2525 or z3792 or ecs3391 or sf2572 SWALL:AAN44071 (EMBL:M88654) (111 aa) fasta scores: E(): 6.7e-39, 84.68% id in 111 aa
YP_051322.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_051323.1	J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins
YP_051324.1	forms iron-sulfur clusters of ferredoxin [2FE-2S]; binds iron in the presence of the thioredoxin reductase system; forms homodimers and tetramers; similar to SufA protein
YP_051325.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri NifU-like protein NifU or IcsU or b2529 or c3055 or z3796 or ecs3395 or sf2576 SWALL:NIFU_ECOLI (SWALL:P77310) (128 aa) fasta scores: E(): 1.5e-44, 92.18% id in 128 aa, and to Xenorhabdus nematophilus  iron-binding protein IscU iscU SWALL:AAN17746 (EMBL:AY138456) (128 aa) fasta scores: E(): 1.1e-44, 91.4% id in 128 aa
YP_051326.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_051327.1	regulates the expression of the iscRSUA operon
YP_051328.1	Similar to Yersinia pestis  SpoU-family rRNA methylase ypo2898 or y1332 SWALL:Q8ZCR9 (EMBL:AJ414154) (257 aa) fasta scores: E(): 1.2e-78, 85.77% id in 239 aa, and to Escherichia coli O157:H7 hypothetical tRNA/rRNA methyltransferase yfhq yfhq or z3799 or ecs3398 SWALL:YFHQ_ECO57 (SWALL:Q8XA83) (245 aa) fasta scores: E(): 3.7e-74, 82.77% id in 238 aa
YP_051329.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 inositol-1-monophosphatase SuhB or SsyA or b2533 or c3059 or z3800 or ecs3399 SWALL:SUHB_ECOLI (SWALL:P22783) (267 aa) fasta scores: E(): 2.4e-90, 84.64% id in 267 aa
YP_051330.1	Similar to Yersinia pestis  solute-binding periplasmic protein of ABC transporter y3342 SWALL:AAM86892 (EMBL:AE013935) (369 aa) fasta scores: E(): 6.7e-37, 35.22% id in 335 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 2.4e-36, 32.24% id in 366 aa
YP_051331.1	Similar to Yersinia pestis  feccd-family membrane transport protein ypo1311 or yiub or y2874 SWALL:Q8ZGI6 (EMBL:AJ414147) (360 aa) fasta scores: E(): 2.2e-108, 81.66% id in 360 aa, and to Salmonella typhimurium  ABC transport protein stm0770 SWALL:Q8ZQS4 (EMBL:AE008731) (359 aa) fasta scores: E(): 2.2e-94, 72.06% id in 358 aa
YP_051332.1	Similar to Escherichia coli ferric-enterobactin-transport protein SWALL:Q8VR78 (EMBL:AF447814) (255 aa) fasta scores: E(): 7.9e-59, 67.05% id in 255 aa, and to Yersinia pestis  siderophore ABC transporter, ATP-binding subunit ypo1312 or yiuc or y2873 SWALL:AAM86424 (EMBL:AJ414147) (262 aa) fasta scores: E(): 1.4e-74, 81.15% id in 260 aa
YP_051334.1	Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 4.9e-43, 36.94% id in 536 aa, and to Ralstonia solanacearum methyl-accepting chemotaxis transducer transmembrane protein rsp1027 or rs02364 SWALL:Q8XR41 (EMBL:AL646082) (524 aa) fasta scores: E(): 4.5e-49, 39.36% id in 508 aa
YP_051335.1	Similar to Yersinia pestis  periplasmic substrate-binding transport protein ypo1310 SWALL:Q8ZGI7 (EMBL:AJ414147) (381 aa) fasta scores: E(): 7.2e-48, 35.13% id in 370 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 2e-86, 58.22% id in 371 aa
YP_051336.1	Similar to Yersinia pestis  membrane protein ypo2901 SWALL:Q8ZCR7 (EMBL:AJ414154) (340 aa) fasta scores: E(): 3.8e-43, 55.95% id in 361 aa, and to Salmonella typhimurium  inner membrane protein stm2551 SWALL:Q8ZN38 (EMBL:AE008816) (328 aa) fasta scores: E(): 5.7e-35, 50.28% id in 352 aa
YP_051337.1	Similar to Yersinia pestis  exported protein ypo2902 or y1329 SWALL:Q8ZCR6 (EMBL:AJ414154) (224 aa) fasta scores: E(): 8.7e-56, 65.15% id in 221 aa, and to Salmonella typhi  exported protein sty2799 SWALL:Q8Z4M5 (EMBL:AL627275) (212 aa) fasta scores: E(): 5.3e-44, 57.35% id in 204 aa
YP_051338.1	transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters
YP_051339.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_051340.1	flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine
YP_051341.1	Similar to Erwinia chrysanthemi pectin acetylesterase PaeY SWALL:O32563 (EMBL:Y09828) (551 aa) fasta scores: E(): 8.8e-135, 61.07% id in 542 aa
YP_051342.1	Similar to Erwinia chrysanthemi pectinesterase a precursor PemA or Pem SWALL:PMEA_ERWCH (SWALL:P07863) (366 aa) fasta scores: E(): 3.5e-98, 70.47% id in 359 aa
YP_051343.1	indirectly regulates nitrogen metabolism; at high nitrogen levels P-II prevents the phosphorylation of NR-I, the transcriptional activator of the glutamine synthetase gene (glnA); at low nitrogen levels P-II is uridylylated to form PII-UMP and interacts with an adenylyltransferase (GlnE) that activates GlnA
YP_051344.1	Similar to Yersinia pestis two-component system response regulator ypo2914 SWALL:Q8ZCQ7 (EMBL:AJ414154) (445 aa) fasta scores: E(): 1.3e-149, 91.91% id in 445 aa, and to Salmonella typhimurium  transcriptional regulator of two-component regulator protein yfha or stm2562 SWALL:Q8ZN32 (EMBL:AE008816) (445 aa) fasta scores: E(): 1.3e-142, 86.96% id in 445 aa
YP_051345.1	Similar to Yersinia pestis  lipoprotein ypo2915 SWALL:Q8ZCQ6 (EMBL:AJ414154) (331 aa) fasta scores: E(): 7.9e-37, 45.45% id in 253 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yfhg or b2555 or z3831 or ecs3421 or sf2602 SWALL:YFHG_ECOLI (SWALL:P37328) (237 aa) fasta scores: E(): 3.6e-30, 45.61% id in 228 aa
YP_051346.1	Similar to Yersinia pestis two-component system sensor kinase ypo2916 or y1313 SWALL:Q8ZCQ5 (EMBL:AJ414154) (483 aa) fasta scores: E(): 5.4e-148, 79.91% id in 478 aa, and to Salmonella typhimurium sensory kinase in regulatory system yfhk or stm2564 SWALL:Q8ZN30 (EMBL:AE008816) (480 aa) fasta scores: E(): 6.7e-134, 73.67% id in 471 aa
YP_051347.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_051348.1	YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function
YP_051349.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein yfhc or b2559 or sf2606 SWALL:AAN44103 (EMBL:X72336) (178 aa) fasta scores: E(): 7.7e-49, 74.68% id in 158 aa, and to Salmonella typhimurium, and Salmonella typhi  cytosine/adenosine deaminase yfhc or stm2568 or sty2814 SWALL:Q8XGY4 (EMBL:AE008817) (183 aa) fasta scores: E(): 1.1e-48, 75.31% id in 158 aa
YP_051350.1	Similar to Yersinia pestis  membrane protein ypo2924 SWALL:Q8ZCP9 (EMBL:AJ414154) (215 aa) fasta scores: E(): 1.7e-62, 74.27% id in 206 aa, and to Salmonella typhimurium putatative phosphoserine phosphatase yfhb or stm2569 SWALL:Q8ZN27 (EMBL:AE008817) (211 aa) fasta scores: E(): 3e-62, 71.01% id in 207 aa
YP_051351.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_051352.1	Similar to Pseudomonas putida conserved hypothetical protein pp0164 SWALL:AAN65797 (EMBL:AE016774) (213 aa) fasta scores: E(): 5.6e-51, 59.9% id in 207 aa, and to Vibrio vulnificus predicted periplasmic protein vv21126 SWALL:AAO08027 (EMBL:AE016812) (237 aa) fasta scores: E(): 2e-31, 44.87% id in 205 aa
YP_051353.1	Similar to Pseudomonas putida GGDEF domain protein pp0165 SWALL:AAN65798 (EMBL:AE016774) (648 aa) fasta scores: E(): 8e-140, 56.7% id in 649 aa, and to Vibrio vulnificus fog: EAL domain protein vv21127 SWALL:AAO08028 (EMBL:AE016812) (639 aa) fasta scores: E(): 2.7e-33, 26.2% id in 641 aa
YP_051355.1	Similar to Ralstonia solanacearum hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 3.1e-134, 29.53% id in 4320 aa, and to Aeromonas salmonicida Rtx protein Asx SWALL:Q9L800 (EMBL:AF218037) (2747 aa) fasta scores: E(): 1.3e-47, 28.2% id in 2822 aa
YP_051356.1	Similar to Pseudomonas putida agglutination protein precursor AggA SWALL:Q52018 (EMBL:M64540) (452 aa) fasta scores: E(): 4e-73, 47.27% id in 440 aa, and to Vibrio cholerae agglutination protein vc1621 SWALL:Q9KRL6 (EMBL:AE004240) (445 aa) fasta scores: E(): 1.6e-51, 36.58% id in 421 aa
YP_051357.1	Similar to Actinobacillus pleuropneumoniae Rtx-I toxin determinant B Apxib or clyib or hlyib or appB SWALL:RT1B_ACTPL (SWALL:P26760) (707 aa) fasta scores: E(): 1.1e-55, 28.05% id in 695 aa, and to Pseudomonas putida toxin secretion ATP-binding protein pp0167 SWALL:AAN65800 (EMBL:AE016774) (718 aa) fasta scores: E(): 1.1e-188, 69.83% id in 706 aa, and to Pasteurella haemolytica leukotoxin secretion ATP-binding protein lktB SWALL:HLYB_PASHA (SWALL:P16532) (708 aa) fasta scores: E(): 1.1e-55, 27.84% id in 686 aa
YP_051358.1	Similar to Rhizobium leguminosarum PrsE protein prsE SWALL:O05694 (EMBL:Y12758) (435 aa) fasta scores: E(): 4.6e-27, 29.72% id in 434 aa, and to Pseudomonas putida HlyD family secretion protein pp0166 SWALL:AAN65799 (EMBL:AE016774) (458 aa) fasta scores: E(): 1.9e-103, 65.19% id in 454 aa
YP_051359.1	Similar to Rhizobium meliloti hypothetical protein r00959 or smc00038 SWALL:Q92KJ3 (EMBL:AL591785) (772 aa) fasta scores: E(): 1e-48, 35.35% id in 461 aa, and to Xanthomonas campestris c-di-gmp phosphodiesterase A PdeA or xcc1865 SWALL:Q8P9J8 (EMBL:AE012289) (726 aa) fasta scores: E(): 1.1e-41, 31.81% id in 462 aa
YP_051360.1	in Escherichia coli this protein is involved in flagellar function
YP_051362.1	Similar to Escherichia coli O6  ferredoxin-like protein yfhl or c3086 SWALL:AAN81535 (EMBL:AE016764) (86 aa) fasta scores: E(): 4.5e-28, 82.55% id in 86 aa, and to Salmonella typhimurium  ferredoxin yfhl or stm2576 SWALL:Q8ZN20 (EMBL:AE008817) (86 aa) fasta scores: E(): 2.3e-27, 79.06% id in 86 aa
YP_051363.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_051364.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_051365.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_051366.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_051367.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_051368.1	catalyzes the cleavage of the amino-terminal leader peptide from secretory proteins
YP_051369.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_051370.1	involved in the reduction of the SoxR iron-sulfur cluster
YP_051371.1	periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP
YP_051372.1	Similar to Escherichia coli, and Escherichia coli O6 sigma-E factor negative regulatory protein RseA or MclA or b2572 or c3096 SWALL:RSEA_ECOLI (SWALL:P38106) (216 aa) fasta scores: E(): 9.8e-48, 62.21% id in 217 aa
YP_051373.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_051374.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_051375.1	Similar to Escherichia coli O157:H7  enzyme yfic or z3857 or ecs3441 SWALL:Q8XA22 (EMBL:AE005488) (285 aa) fasta scores: E(): 5.8e-52, 58.4% id in 238 aa, and to Salmonella typhimurium  transferase yfic or stm2642 SWALL:Q8ZMX8 (EMBL:AE008820) (245 aa) fasta scores: E(): 9.4e-52, 57.14% id in 238 aa
YP_051376.1	facilitates an early step in the assembly of the 50S subunit of the ribosome
YP_051377.1	stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit
YP_051378.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_051379.1	Similar to Escherichia coli IroE protein SWALL:Q93K72 (EMBL:X16664) (318 aa) fasta scores: E(): 2e-18, 28.94% id in 304 aa, and to Campylobacter jejuni periplasmic protein cj1376 SWALL:Q9PMS4 (EMBL:AL139078) (269 aa) fasta scores: E(): 1.9e-19, 32.45% id in 265 aa
YP_051380.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_051381.1	Similar to Caulobacter crescentus fmn oxidoreductase cc2129 SWALL:Q9A6G5 (EMBL:AE005885) (363 aa) fasta scores: E(): 8.2e-85, 61.14% id in 368 aa, and to Streptomyces coelicolor  oxidoreduxtase sco4297 or scd95a.30 SWALL:Q9KXU4 (EMBL:AL939119) (376 aa) fasta scores: E(): 2.7e-75, 55.31% id in 367 aa
YP_051382.1	Similar to Rhizobium loti norsolorinic acid reductase mll1952 SWALL:Q98JG7 (EMBL:AP002998) (348 aa) fasta scores: E(): 1.6e-69, 55.58% id in 349 aa, and to Xanthomonas campestris rhizopine catabolism protein moca or xcc3724 SWALL:Q8P4I3 (EMBL:AE012493) (356 aa) fasta scores: E(): 6.5e-46, 45.37% id in 346 aa
YP_051383.1	Similar to Rhizobium meliloti  transcriptional regulator ra1038 or sma1887 SWALL:Q92Y50 (EMBL:AE007290) (200 aa) fasta scores: E(): 2.6e-23, 41.48% id in 188 aa, and to Agrobacterium tumefaciens transcriptional regulator, TetR family atu4217 or agr_l_1283 SWALL:Q8U882 (EMBL:AE009351) (199 aa) fasta scores: E(): 5.5e-23, 42.07% id in 183 aa
YP_051384.1	Similar to Chlorobium tepidum hypothetical protein Ct0748 SWALL:Q8KEE1 (EMBL:AE012845) (133 aa) fasta scores: E(): 1.8e-18, 48% id in 125 aa, and to Nitrosomonas europaea hypothetical protein ne1276 SWALL:CAD85187 (EMBL:BX321860) (134 aa) fasta scores: E(): 1.9e-16, 43.54% id in 124 aa
YP_051385.1	Similar to Escherichia coli sulfate/thiosulfate import ATP-binding protein CysA or b2422 SWALL:CYSA_ECOLI (SWALL:P16676) (365 aa) fasta scores: E(): 2e-56, 53.54% id in 353 aa
YP_051386.1	Similar to Escherichia coli, and Escherichia coli O6 sulfate transport system permease protein CysW or b2423 or c2957 SWALL:CYSW_ECOLI (SWALL:P16702) (291 aa) fasta scores: E(): 1.3e-52, 47.93% id in 290 aa
YP_051387.1	Similar to Escherichia coli sulfate transport system permease protein CysU or CysT or b2424 SWALL:CYST_ECOLI (SWALL:P16701) (277 aa) fasta scores: E(): 4e-45, 46.21% id in 264 aa
YP_051388.1	Similar to Escherichia coli sulfate-binding protein precursor Sbp or b3917 SWALL:SUBI_ECOLI (SWALL:P06997) (329 aa) fasta scores: E(): 8e-77, 61.46% id in 327 aa
YP_051389.1	regulates the expression of the operons for the enzymes involved in galactarate, glucarate and glycerate utilization
YP_051390.1	protease Do; required at high temperature; degrades damaged proteins
YP_051391.1	forms a homotetramer; requires magnesium for activity; catalyzes the hydrolysis of dGTP to form deoxyguanosine and triphosphate
YP_051392.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_051393.1	solute binding component of the vitamin B12 transport system BtuCDF
YP_051394.1	Similar to Escherichia coli hypothetical protein ymda precursor ymda or b1044 SWALL:YMDA_ECOLI (SWALL:P75917) (103 aa) fasta scores: E(): 3.1, 26.19% id in 84 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1040 SWALL:AAN42662 (EMBL:AE015132) (103 aa) fasta scores: E(): 4.2, 25% id in 84 aa
YP_051395.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yadr or b0156 or c0191 or z0167 or ecs0160 or sf0148 SWALL:YADR_ECOLI (SWALL:P37026) (114 aa) fasta scores: E(): 1.7e-38, 89.56% id in 115 aa, and to Yersinia pestis hypothetical protein Ypo3387 SWALL:Q8ZBM1 (EMBL:AJ414156) (114 aa) fasta scores: E(): 2.8e-37, 88.69% id in 115 aa
YP_051396.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_051397.1	Similar to Yersinia pestis similar to tyrosine aminotransferase ypo1960 SWALL:Q9ZC65 (EMBL:AL031866) (473 aa) fasta scores: E(): 1.5e-54, 34.53% id in 472 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4132 SWALL:Q9HWP9 (EMBL:AE004829) (471 aa) fasta scores: E(): 9e-61, 38.18% id in 474 aa
YP_051398.1	Similar to Rhizobium meliloti hypothetical transmembrane protein smc01425 r02108 or smc01425 SWALL:Q92NS0 (EMBL:AL591789) (197 aa) fasta scores: E(): 2.7e-22, 39.68% id in 189 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2306 SWALL:Q9I1G9 (EMBL:AE004657) (205 aa) fasta scores: E(): 3e-20, 37.37% id in 198 aa
YP_051399.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_051400.1	Part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter; binds to all hydroxamate siderophores
YP_051401.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter
YP_051402.1	bifunctional periplasmic enzyme; contains transglycosylase and transpeptidase activity; major enzyme for peptidoglycan biosynthesis in Escherichia coli; transmembrane protein; forms dimers; three variants, one of which may be a degradation product, while the other appears to result from an alternative initiation site, are found within the cell
YP_051403.1	similar in sequence to the ATP-dependent RNA helicase HrpA
YP_051404.1	Similar to Escherichia coli 2'-5' RNA ligase LigT or b0147 SWALL:LIGT_ECOLI (SWALL:P37025) (175 aa) fasta scores: E(): 8.7e-42, 60.57% id in 175 aa
YP_051405.1	Regulatory factor involved in maltose metabolism
YP_051406.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri dnak suppressor protein DksA or b0145 or c0178 or z0156 or ecs0149 or sf0137 SWALL:DKSA_ECOLI (SWALL:P18274) (151 aa) fasta scores: E(): 1.9e-52, 94.04% id in 151 aa
YP_051407.1	this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu
YP_051408.1	Polymerase that creates the 3' poly(A) tail found in some mRNA's
YP_051409.1	Similar to Escherichia coli 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK or b0142 SWALL:HPPK_ECOLI (SWALL:P26281) (158 aa) fasta scores: E(): 1.5e-39, 67.08% id in 158 aa
YP_051410.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_051411.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_051412.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_051413.1	Similar to Salmonella typhi ABC transporter integral membrane protein sty0195 SWALL:Q8Z9D6 (EMBL:AL627265) (256 aa) fasta scores: E(): 1.6e-82, 83.59% id in 256 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yadh or b0128 or c0157 or z0139 or ecs0132 or sf0125 SWALL:YADH_ECOLI (SWALL:P36880) (256 aa) fasta scores: E(): 1.3e-81, 82.42% id in 256 aa
YP_051414.1	Similar to Yersinia pestis  ABC transporter, ATP-binding protein ypo3406 or y0780 SWALL:AAM84367 (EMBL:AJ414157) (308 aa) fasta scores: E(): 3.2e-91, 85.25% id in 312 aa, and to Escherichia coli hypothetical ABC transporter ATP-binding protein yadg or b0127 SWALL:YADG_ECOLI (SWALL:P36879) (308 aa) fasta scores: E(): 6.1e-88, 85.05% id in 301 aa
YP_051415.1	Similar to Yersinia pestis hypothetical protein Ypo0143 SWALL:Q8ZJG5 (EMBL:AJ414141) (64 aa) fasta scores: E(): 0.019, 55.55% id in 36 aa
YP_051416.1	catalyzes the interconversion of bicarbonate and carbon dioxide
YP_051417.2	Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively
YP_051418.1	Similar to Pasteurella multocida hypothetical protein Pm1553 SWALL:Q9CKQ3 (EMBL:AE006192) (130 aa) fasta scores: E(): 7.8e-28, 58.73% id in 126 aa, and to Rhizobium loti hypothetical protein Mlr4407 SWALL:Q98E50 (EMBL:AP003004) (165 aa) fasta scores: E(): 1.3e-14, 39.69% id in 131 aa
YP_051419.1	Similar to Pasteurella haemolytica ATPase FbpC SWALL:Q9ZHY0 (EMBL:AF047427) (336 aa) fasta scores: E(): 8.5e-53, 44.57% id in 341 aa, and to Vibrio vulnificus ABC-type spermidine/putrescine transport system, ATPase component vv11663 SWALL:AAO10080 (EMBL:AE016802) (342 aa) fasta scores: E(): 1.3e-51, 44.14% id in 333 aa
YP_051420.1	Similar to Vibrio cholerae iron vc0609 SWALL:Q9KUB4 (EMBL:AE004146) (541 aa) fasta scores: E(): 2.7e-75, 41.11% id in 540 aa, and to Pasteurella multocida fbpb fbpb or pm0050 SWALL:Q9CPI8 (EMBL:AE006038) (552 aa) fasta scores: E(): 6.1e-78, 41.3% id in 552 aa
YP_051421.1	Similar to Yersinia pestis  exported protein ypo3410 or y0776 SWALL:Q8ZBJ9 (EMBL:AJ414157) (115 aa) fasta scores: E(): 1.6e-30, 69.29% id in 114 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yacc precursor yacc or b0122 or c0151 SWALL:YACC_ECOLI (SWALL:P23838) (115 aa) fasta scores: E(): 1.6e-27, 64.34% id in 115 aa
YP_051422.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_051423.1	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_051424.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutaredoxin-like protein NrdH or b2673 or c3226 or z3975 or ecs3536 or sf2701 SWALL:NRDH_ECOLI (SWALL:Q47414) (81 aa) fasta scores: E(): 4.2e-11, 45.33% id in 75 aa
YP_051425.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_051426.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_051427.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_051428.1	3'-5' exonuclease of DNA polymerase III
YP_051429.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_051430.1	Similar to Yersinia pestis hypothetical protein ypo1080 or y3096 SWALL:AAM86646 (EMBL:AJ414146) (239 aa) fasta scores: E(): 6.6e-62, 61.86% id in 236 aa, and to Salmonella typhimurium  sam-dependent methyltransferase yafs or stm0262 SWALL:Q8ZRM1 (EMBL:AE008707) (240 aa) fasta scores: E(): 6.6e-60, 59.07% id in 237 aa
YP_051431.1	Similar to Escherichia coli, and Escherichia coli O157:H7 probable hydroxyacylglutathione hydrolase glob or b0212 or z0236 or ecs0208 SWALL:GLO2_ECOLI (SWALL:Q47677) (251 aa) fasta scores: E(): 1.2e-56, 56.17% id in 251 aa, and to Photorhabdus luminescens GloB gloB SWALL:AAO17226 (EMBL:AF346500) (250 aa) fasta scores: E(): 4.1e-57, 54.98% id in 251 aa
YP_051432.1	catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; may play a role in recycling muropeptides during cell division and/or cell elongation; in Helicobacter pylori MltD is a endolytic transglycosylase involved mainly in the rearrangement of the peptidoglycan layer of the bacterial cell wall
YP_051433.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yafd yafd or b0209 or c0246 or z0232 or ecs0205 or sf0195 SWALL:YAFD_ECOLI (SWALL:P30865) (266 aa) fasta scores: E(): 2.4e-76, 71.53% id in 260 aa, and to Salmonella typhimurium  cytoplasmic protein yafd or stm0258 SWALL:Q8ZRM4 (EMBL:AE008706) (259 aa) fasta scores: E(): 1.5e-74, 71.54% id in 253 aa
YP_051434.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ClpB protein ClpB or HtpM or b2592 or c3114 or z3886 or ecs3455 SWALL:CLPB_ECOLI (SWALL:P03815) (857 aa) fasta scores: E(): 0, 85.64% id in 857 aa
YP_051435.1	Similar to Yersinia pestis hypothetical protein ypo3276 or y0913 SWALL:Q8ZBV8 (EMBL:AJ414156) (243 aa) fasta scores: E(): 1.6e-62, 66.25% id in 240 aa, and to Salmonella typhi hypothetical protein Sty2850 SWALL:Q8Z4J1 (EMBL:AL627276) (243 aa) fasta scores: E(): 9.7e-62, 64.16% id in 240 aa
YP_051436.1	responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA
YP_051437.1	with YaeT, NlpB and YfgL forms a complex involved in the proper assembly and/or targeting of OMPs to the outer membrane; involved in resistance to ampicillin and tetracycline
YP_051438.1	Similar to Yersinia pestis  sigma 54 modulation protein ypo3279 SWALL:Q8ZBV5 (EMBL:AJ414156) (120 aa) fasta scores: E(): 3.7e-34, 84.95% id in 113 aa, and to Salmonella typhimurium, and Salmonella typhi ribosome associated factor, stabilizes ribosomes against dissociation yfia or stm2665 or sty2853 SWALL:Q8XEX6 (EMBL:AE008821) (112 aa) fasta scores: E(): 8.3e-31, 79.46% id in 112 aa
YP_051439.1	catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_051440.1	catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis
YP_051441.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_051442.1	unknown function; when overproduced it confers drug-resistance
YP_051443.1	Similar to Shigella flexneri orf, conserved hypothetical protein yfil or sf2662 SWALL:AAN44158 (EMBL:AE015282) (127 aa) fasta scores: E(): 2.5e-11, 38.33% id in 120 aa, and to Escherichia coli hypothetical protein yfil yfil or b2602 SWALL:YFIL_ECOLI (SWALL:P11289) (134 aa) fasta scores: E(): 2.6e-11, 38.33% id in 120 aa
YP_051444.1	Similar to Ralstonia solanacearum hypothetical protein rsc2286 or rs01270 SWALL:Q8XX32 (EMBL:AL646069) (317 aa) fasta scores: E(): 4e-55, 49.83% id in 311 aa, and to Xanthomonas campestris hypothetical protein Xcc1543 SWALL:Q8PAE2 (EMBL:AE012255) (319 aa) fasta scores: E(): 2.2e-50, 47.84% id in 301 aa
YP_051445.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_051446.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_051447.1	Essential for efficient processing of 16S rRNA
YP_051448.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_051449.1	with 4.5S RNA forms a signal recognition particle involved in targeting and integration of inner membrane proteins
YP_051450.1	Similar to Yersinia pestis  membrane protein ypo3297 or y0891 SWALL:Q8ZBU5 (EMBL:AJ414156) (297 aa) fasta scores: E(): 4.5e-81, 75.57% id in 262 aa, and to Salmonella typhimurium CorE SWALL:Q9X619 (EMBL:AF130857) (288 aa) fasta scores: E(): 3.6e-78, 72.72% id in 264 aa
YP_051451.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_051452.1	involved in the first step of glutathione biosynthesis
YP_051453.1	Similar to Yersinia pestis  membrane protein ypo3302 or y0886 SWALL:Q8ZBU1 (EMBL:AJ414156) (142 aa) fasta scores: E(): 4.6e-36, 69.5% id in 141 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yqaa or stm2819 or sty2945 SWALL:Q8XGM5 (EMBL:AE008828) (141 aa) fasta scores: E(): 2.6e-31, 55.31% id in 141 aa
YP_051454.1	YqaB; catalyzes the dephosphorylation of fructose 1-phosphate, 6-phosphogluconate and p-nitrophenyl phosphate (pNPP); presents beta-phosphoglucomutase activity at a lower extent
YP_051455.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_051456.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_051457.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_051458.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_051459.1	Similar to Yersinia pestis  competence-damaged protein ypo3308 SWALL:Q8ZBT7 (EMBL:AJ414156) (162 aa) fasta scores: E(): 4.4e-38, 65.43% id in 162 aa, and to Salmonella typhi hypothetical protein Sty2951 SWALL:Q8Z4D3 (EMBL:AL627276) (165 aa) fasta scores: E(): 3.6e-37, 63.8% id in 163 aa
YP_051460.1	Similar to Pasteurella multocida hypothetical protein Pm0253 SWALL:Q9CP15 (EMBL:AE006059) (117 aa) fasta scores: E(): 1e-27, 55.85% id in 111 aa
YP_051461.1	Similar to Anabaena sp. hypothetical protein All2381 SWALL:Q8YUG5 (EMBL:AP003589) (151 aa) fasta scores: E(): 7e-05, 27.46% id in 142 aa, and to Streptomyces lincolnensis hypothetical 17.2 kDa protein in melc2-rnhh intergenic region SWALL:YMEL_STRLN (SWALL:P55049) (150 aa) fasta scores: E(): 0.00028, 25.87% id in 143 aa
YP_051462.1	protein involved in resistance to different drugs (tetracycline, chloramphenicol, beta-lactams, and quinolones); part of the multiple antibiotic resistance (mar) locus, which is composed by the genes marC and marRAB; unknown function
YP_051463.1	Similar to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 6.6e-66, 37.96% id in 511 aa, and to Pseudomonas putida ggdef family protein pp2413 SWALL:AAN68025 (EMBL:AE016783) (544 aa) fasta scores: E(): 3.3e-73, 41.66% id in 516 aa
YP_051464.1	Similar to Xanthomonas campestris mfs transporter xcc0495 SWALL:Q8PD50 (EMBL:AE012146) (396 aa) fasta scores: E(): 1.9e-46, 42.6% id in 392 aa, and to Clostridium acetobutylicum predicted permease cac3482 SWALL:Q97DJ5 (EMBL:AE007845) (394 aa) fasta scores: E(): 6.2e-46, 42.54% id in 362 aa
YP_051465.1	Similar to Rhizobium loti transcription regulator mll3011 SWALL:Q98H66 (EMBL:AP003001) (292 aa) fasta scores: E(): 2.1e-49, 48.61% id in 288 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp3811 SWALL:Q88GB3 (EMBL:AE016788) (294 aa) fasta scores: E(): 1e-34, 41.15% id in 294 aa
YP_051466.1	cofactor involved in the reduction of disulfides
YP_051467.1	Similar to Yersinia pestis pesticin immunity protein Pim or yppcp1.04 SWALL:Q57285 (EMBL:Z54145) (141 aa) fasta scores: E(): 0.0013, 30.76% id in 143 aa
YP_051468.1	Similar to Nocardia aerocolonigenes glycosyltransferase RbmA or Ngt SWALL:BAC15749 (EMBL:AF534707) (421 aa) fasta scores: E(): 9.7e-34, 31.88% id in 414 aa, and to Streptomyces sp. TP-A0274 N-glycosyltransferase staG SWALL:BAC55209 (EMBL:AB088119) (446 aa) fasta scores: E(): 6.3e-32, 30.76% id in 416 aa
YP_051469.1	Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcB SWALL:O30371 (EMBL:AF002222) (291 aa) fasta scores: E(): 7.7e-50, 49.43% id in 263 aa, and to Vibrio cholerae PvcB protein vc1944 SWALL:Q9KQQ4 (EMBL:AE004270) (287 aa) fasta scores: E(): 7.2e-47, 45.09% id in 275 aa
YP_051470.1	Similar to Pseudomonas aeruginosa pyoverdine biosynthesis protein PvcA SWALL:O30370 (EMBL:AF002222) (327 aa) fasta scores: E(): 2.3e-70, 61.38% id in 303 aa, and to Vibrio cholerae PvcA protein vc1949 SWALL:Q9KQP9 (EMBL:AE004270) (608 aa) fasta scores: E(): 2.1e-13, 28.52% id in 284 aa
YP_051471.1	Similar to Escherichia coli colicin k immunity protein Cki or CfI SWALL:IMMK_ECOLI (SWALL:Q47503) (96 aa) fasta scores: E(): 1.8, 36.06% id in 61 aa, and to Campylobacter jejuni hypothetical 8.5 kDa protein SWALL:O07090 (EMBL:Y13641) (73 aa) fasta scores: E(): 0.26, 30.61% id in 49 aa
YP_051474.1	Similar to Ralstonia solanacearum hypothetical protein rsp1543 or rs02099 SWALL:Q8XPU3 (EMBL:AL646085) (104 aa) fasta scores: E(): 0.013, 32.97% id in 94 aa, and to Neisseria meningitidis hypothetical protein Nmb0654 SWALL:Q9K0F3 (EMBL:AE002420) (105 aa) fasta scores: E(): 4.3, 23.25% id in 86 aa
YP_051478.1	Similar to Neisseria meningitidis hypothetical protein Nma1078 SWALL:Q9JUY9 (EMBL:AL162755) (122 aa) fasta scores: E(): 5.7e-08, 49.27% id in 69 aa
YP_051480.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_051481.1	Similar to Photorhabdus luminescens DnaG primase-like dnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2.5e-133, 71.76% id in 928 aa, and to the N-terminal region of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase dnag or dnap or parb or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 2.7e-13, 29.1% id in 378 aa. Also similar to ECA3400, (82.939% id), ECA3407 (85.082% id), ECA3416 (85.082% id), ECA4282 (80.041% id), and to ECA4291 (80.041% id).
YP_051482.1	Similar to Escherichia coli O157:H7 similar to DicA, regulator of dicB, encoded within cryptic prophage cp-933m z1333 or ecs1069 SWALL:Q8XD66 (EMBL:AE005287) (132 aa) fasta scores: E(): 0.00065, 33.66% id in 101 aa
YP_051483.1	Similar to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 1e-07, 38.63% id in 88 aa, and to Salmonella typhimurium cytoplasmic protein stm0296 SWALL:Q8ZRK7 (EMBL:AE008708) (82 aa) fasta scores: E(): 2.2e-07, 38.46% id in 65 aa
YP_051484.1	Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:AAM83857 (EMBL:AJ414158) (63 aa) fasta scores: E(): 1.5e-06, 59.09% id in 44 aa
YP_051490.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_051491.1	Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 5.1e-145, 74.15% id in 921 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 9.7e-14, 29.11% id in 395 aa. Also similar to ECA3390, (82.939% id), ECA3407 (86.812% id), ECA3416 (86.812% id), ECA4282 (84.394% id), and to ECA4291 (84.394% id).
YP_051492.1	Similar to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 0.00051, 27.02% id in 111 aa, and to Bacteriophage A118 repressor protein SWALL:Q9T188 (EMBL:AJ242593) (101 aa) fasta scores: E(): 0.012, 36.5% id in 63 aa
YP_051493.1	Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 2.4e-17, 63.51% id in 74 aa, and to Photorhabdus luminescens Orf8 SWALL:Q8GDM5 (EMBL:AY144117) (106 aa) fasta scores: E(): 4.7e-10, 53.62% id in 69 aa
YP_051497.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_051498.1	Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2.1e-145, 73.72% id in 921 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.2e-13, 27.89% id in 423 aa. Also similar to ECA3390, (85.082% id), ECA3400 (86.812% id), ECA3416 (100.000% id), ECA4282 (87.010% id), and to ECA4291 (87.010% id).
YP_051499.1	Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 0.024, 32% id in 100 aa, and to Stigmatella aurantiaca  transcriptional repressor SWALL:Q93TW4 (EMBL:AF319998) (119 aa) fasta scores: E(): 0.001, 30.35% id in 112 aa
YP_051500.1	Similar to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 2.9e-08, 39.77% id in 88 aa, and to Salmonella typhimurium cytoplasmic protein stm0296 SWALL:Q8ZRK7 (EMBL:AE008708) (82 aa) fasta scores: E(): 1.7e-08, 40% id in 65 aa
YP_051501.1	Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:Q8ZB18 (EMBL:AJ414158) (63 aa) fasta scores: E(): 2e-05, 54.54% id in 44 aa
YP_051502.1	Similar to Clostridium acetobutylicum hypothetical protein Cac2031 SWALL:Q97HI0 (EMBL:AE007706) (80 aa) fasta scores: E(): 8.4e-10, 49.25% id in 67 aa
YP_051506.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_051507.1	Similar to Photorhabdus luminescens DnaG primase-like dnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2e-145, 73.72% id in 921 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.2e-13, 27.89% id in 423 aa. Also similar to ECA3390, (85.082% id), ECA3400 (86.812% id), ECA3407 (100.000% id), ECA4282 (87.010% id), and to ECA4291 (87.010% id).
YP_051508.1	Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 0.024, 32% id in 100 aa, and to Stigmatella aurantiaca  transcriptional repressor SWALL:Q93TW4 (EMBL:AF319998) (119 aa) fasta scores: E(): 0.001, 30.35% id in 112 aa
YP_051509.1	Similar to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 2.9e-08, 39.77% id in 88 aa, and to Salmonella typhimurium cytoplasmic protein stm0296 SWALL:Q8ZRK7 (EMBL:AE008708) (82 aa) fasta scores: E(): 1.7e-08, 40% id in 65 aa
YP_051510.1	Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:Q8ZB18 (EMBL:AJ414158) (63 aa) fasta scores: E(): 6.4e-05, 50% id in 44 aa
YP_051511.1	Similar to Pediococcus damnosus hsp60 SWALL:Q8KWK2 (EMBL:AF405397) (184 aa) fasta scores: E(): 4.1, 24.65% id in 146 aa
YP_051512.1	Similar to Photorhabdus luminescens Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 2.3e-61, 28.84% id in 1286 aa, and to Escherichia coli RhsB protein precursor RhsB or b3482 SWALL:RHSB_ECOLI (SWALL:P16917) (1411 aa) fasta scores: E(): 2e-25, 24.98% id in 1401 aa
YP_051513.1	Similar to Vibrio cholerae hypothetical protein Vca0019 SWALL:Q9KNE6 (EMBL:AE004345) (295 aa) fasta scores: E(): 0.32, 20.54% id in 219 aa, and to Agrobacterium tumefaciens hypothetical protein atu4349 or agr_l_1031 SWALL:Q8U7V0 (EMBL:AE009363) (320 aa) fasta scores: E(): 0.34, 21.94% id in 319 aa
YP_051515.1	Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 3.9e-08, 31.22% id in 253 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 1.5e-07, 26.66% id in 210 aa. Also similar to ECA3425 (83.784% identity in 259 aa overlap).
YP_051516.1	Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 2.1e-08, 30.68% id in 264 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 5.5e-07, 25.31% id in 237 aa. Also similar to ECA3424 (83.784% identity in 259 aa overlap)
YP_051517.1	Similar to Serratia liquefaciens extracellular phospholipase A1 precursor PhlA SWALL:PA1_SERLI (SWALL:P18952) (319 aa) fasta scores: E(): 4.2e-06, 30.09% id in 216 aa, and to Xanthomonas campestris phospholipase A1 xcc2722 SWALL:Q8P791 (EMBL:AE012385) (398 aa) fasta scores: E(): 3e-09, 33.82% id in 204 aa
YP_051518.1	Similar to Yersinia pestis VgrG-like protein y0257 SWALL:AAM83851 (EMBL:AE013625) (700 aa) fasta scores: E(): 7e-108, 52.01% id in 521 aa, and to Vibrio cholerae VgrG protein vca0018 SWALL:Q9KNE7 (EMBL:AE004345) (694 aa) fasta scores: E(): 7.6e-107, 47.05% id in 680 aa
YP_051519.1	Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (Hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 9.6e-56, 78.48% id in 172 aa, and to Yersinia pestis hypothetical protein ypo3708 ypo3708 or y0036 SWALL:AAM83631 (EMBL:AJ414158) (172 aa) fasta scores: E(): 4.8e-59, 80.81% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA4275 (99.419% identity in 172aa overlap) and ECA2866 (95.349% identity in 172aa overlap).
YP_051520.1	Similar to Escherichia coli hypothetical protein ybeq or b0644 SWALL:YBEQ_ECOLI (SWALL:P77234) (325 aa) fasta scores: E(): 2.1e-09, 28.19% id in 344 aa, and to Shigella flexneri orf, conserved hypothetical protein ybeq or sf0637 SWALL:AAN42273 (EMBL:AE015095) (327 aa) fasta scores: E(): 2.4e-09, 29.58% id in 311 aa
YP_051521.1	Similar to Photorhabdus luminescens Orf3 SWALL:AAN64195 (EMBL:AY144117) (447 aa) fasta scores: E(): 4e-30, 33.47% id in 469 aa, and to Escherichia coli O157:H7 hypothetical protein z0249 z0249 or ecs0217 SWALL:Q8X7X1 (EMBL:AE005197) (499 aa) fasta scores: E(): 2e-25, 30.42% id in 470 aa
YP_051522.1	Similar to Rhizobium leguminosarum ImpL SWALL:Q93EC2 (EMBL:AF361470) (1158 aa) fasta scores: E(): 1.3e-19, 25.08% id in 1200 aa, and to Escherichia coli O157:H7  macrophage toxin z0250 or ecs0218 SWALL:Q8X7W9 (EMBL:AE005197) (1144 aa) fasta scores: E(): 7.8e-112, 44.66% id in 1153 aa, and to Photorhabdus luminescens Pmt1 SWALL:AAN64194 (EMBL:AY144117) (1181 aa) fasta scores: E(): 1.3e-127, 44.42% id in 1184 aa, and to Legionella pneumophila IcmF protein IcmF SWALL:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 7.8e-16, 20.74% id in 969 aa
YP_051523.1	Similar to Photorhabdus luminescens Orf1 SWALL:AAN64193 (EMBL:AY144117) (334 aa) fasta scores: E(): 1e-39, 39.56% id in 321 aa, and to Vibrio cholerae hypothetical protein Vca0119 SWALL:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 2.8e-42, 34.05% id in 464 aa
YP_051524.1	Similar to Yersinia pestis hypothetical protein Ypo3601 SWALL:Q8ZB28 (EMBL:AJ414157) (228 aa) fasta scores: E(): 4.8e-09, 31.88% id in 207 aa, and to Pseudomonas putida conserved hypothetical protein pp4073 SWALL:AAN69663 (EMBL:AE016789) (210 aa) fasta scores: E(): 2.2e-05, 35.23% id in 105 aa
YP_051525.1	Similar to Vibrio cholerae sigma-54 dependent transcriptional regulator vca0117 SWALL:Q9KN48 (EMBL:AE004353) (530 aa) fasta scores: E(): 9.9e-52, 40.46% id in 519 aa, and to Escherichia coli hypothetical sigma-54-dependent transcriptional regulator ygev or b2869 SWALL:YGEV_ECOLI (SWALL:Q46802) (592 aa) fasta scores: E(): 1.8e-39, 35.61% id in 438 aa
YP_051526.1	Similar to Thermus thermophilus ClpB protein ClpB SWALL:CLPB_THETH (SWALL:Q9RA63) (854 aa) fasta scores: E(): 7e-69, 37.97% id in 869 aa, and to Yersinia pestis clp ATPase ClpB2 or ypo3599 or ClpB or y0275 SWALL:Q8ZB30 (EMBL:AJ414157) (867 aa) fasta scores: E(): 6.3e-209, 68.66% id in 868 aa
YP_051527.1	Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 3.4e-16, 27.58% id in 232 aa, and to Yersinia pestis membrane protein ypo3598 or y0276 SWALL:AAM83868 (EMBL:AJ414157) (255 aa) fasta scores: E(): 4e-46, 46.45% id in 254 aa
YP_051528.1	Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 (EMBL:AF361470) (446 aa) fasta scores: E(): 7.8e-61, 40.04% id in 447 aa, and to Vibrio cholerae hypothetical protein Vca0114 SWALL:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.7e-104, 60.04% id in 443 aa
YP_051529.1	Similar to Yersinia pestis  lipoprotein ypo3596 or y0278 SWALL:Q8ZB33 (EMBL:AJ414157) (181 aa) fasta scores: E(): 4.7e-32, 52.6% id in 173 aa, and to Escherichia coli O157:H7 z0257 protein z0257 or ecs0226 SWALL:Q8X7V0 (EMBL:AE005198) (174 aa) fasta scores: E(): 2.1e-28, 47.3% id in 167 aa
YP_051530.1	Similar to Yersinia pestis hypothetical protein ypo3595 or y0279 SWALL:Q8ZB34 (EMBL:AJ414157) (438 aa) fasta scores: E(): 1.1e-36, 40.92% id in 435 aa, and to Escherichia coli O157:H7 hypothetical protein z0258 or ecs0227 SWALL:Q8X7U8 (EMBL:AE005198) (433 aa) fasta scores: E(): 1.3e-35, 39.2% id in 426 aa
YP_051531.1	Similar to Vibrio cholerae hypothetical protein Vca0111 SWALL:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 1.1e-59, 46.8% id in 329 aa, and to Yersinia pestis hypothetical protein Ypo3594 SWALL:Q8ZB35 (EMBL:AJ414157) (349 aa) fasta scores: E(): 2.5e-47, 54.6% id in 326 aa
YP_051532.1	Similar to Rhizobium leguminosarum ImpG SWALL:Q93EC7 (EMBL:AF361470) (593 aa) fasta scores: E(): 1.6e-27, 31.91% id in 611 aa, and to Vibrio cholerae hypothetical protein Vca0110 SWALL:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 9.2e-130, 51.52% id in 592 aa
YP_051533.1	Similar to Yersinia pestis hypothetical protein ypo3705 or y0039 SWALL:Q8ZAT5 (EMBL:AJ414158) (146 aa) fasta scores: E(): 2.3e-22, 45.71% id in 140 aa, and to Escherichia coli O157:H7 hypothetical protein z0261 or ecs0230 SWALL:Q8X7U0 (EMBL:AE005198) (137 aa) fasta scores: E(): 3.6e-14, 36.76% id in 136 aa
YP_051534.1	Similar to Rhizobium leguminosarum ImpC SWALL:Q93ED1 (EMBL:AF361470) (493 aa) fasta scores: E(): 6.4e-63, 37.36% id in 479 aa, and to Yersinia pestis hypothetical protein ypo3706 ypo3706 or y0038 SWALL:Q8ZAT4 (EMBL:AJ414158) (493 aa) fasta scores: E(): 3.1e-158, 78.09% id in 493 aa
YP_051535.1	Similar to Rhizobium leguminosarum ImpB SWALL:Q93ED2 (EMBL:AF361470) (181 aa) fasta scores: E(): 2.6e-09, 32.66% id in 150 aa, and to Yersinia pestis conserved hypothetical protein y0037 SWALL:AAM83632 (EMBL:AE013605) (166 aa) fasta scores: E(): 5.6e-39, 68.71% id in 163 aa
YP_051536.1	Similar to Pseudomonas aeruginosa outer membrane protein OprJ precursor OprJ or pa4597 SWALL:OPRJ_PSEAE (SWALL:Q51397) (479 aa) fasta scores: E(): 1.2e-94, 57.82% id in 460 aa, and to Pseudomonas putida TtgC SWALL:Q9WWZ8 (EMBL:AF031417) (484 aa) fasta scores: E(): 2.4e-70, 45.14% id in 474 aa, and to Pseudomonas aeruginosa outer membrane protein oprm precursor oprm or oprk or pa0427 SWALL:OPRM_PSEAE (SWALL:Q51487) (485 aa) fasta scores: E(): 1.9e-66, 46.78% id in 466 aa
YP_051537.1	Similar to Pseudomonas aeruginosa multidrug resistance protein MexB or pa0426 SWALL:MEXB_PSEAE (SWALL:P52002) (1046 aa) fasta scores: E(): 1.9e-202, 50.82% id in 1037 aa, and to uncultured bacterium MexD protein mexD SWALL:Q8RSM1 (EMBL:AJ431260) (1047 aa) fasta scores: E(): 0, 64.14% id in 1043 aa
YP_051538.1	Similar to Pseudomonas aeruginosa membrane fusion protein MexC or pa4599 SWALL:Q51395 (EMBL:U57969) (387 aa) fasta scores: E(): 6.2e-63, 50.78% id in 384 aa, and to uncultured bacterium MexC protein MexC SWALL:Q8RSM2 (EMBL:AJ431260) (388 aa) fasta scores: E(): 9.2e-63, 53.6% id in 375 aa
YP_051539.1	Similar to Pseudomonas aeruginosa transcriptional regulatory protein NfxB or pa4600 SWALL:NFXB_PSEAE (SWALL:P32265) (187 aa) fasta scores: E(): 3.1e-14, 35.55% id in 180 aa, and to uncultured bacterium NfxB protein NfxB SWALL:Q8RSM3 (EMBL:AJ431260) (186 aa) fasta scores: E(): 9e-17, 37.5% id in 176 aa
YP_051540.1	Similar to Caulobacter crescentus hypothetical protein Cc2071 SWALL:Q9A6M2 (EMBL:AE005880) (219 aa) fasta scores: E(): 7.3e-09, 30.05% id in 183 aa, and to Bacillus halodurans hypothetical protein Bh0736 SWALL:Q9KEW3 (EMBL:AP001509) (179 aa) fasta scores: E(): 0.00085, 28.32% id in 173 aa
YP_051542.1	Similar to Escherichia coli cell filamentation protein Fic or b3361 SWALL:FIC_ECOLI (SWALL:P20605) (200 aa) fasta scores: E(): 1e-26, 37.3% id in 193 aa
YP_051543.1	Similar to the C-terminal regions of Bacteriophage P4 glycoprotein 3 siD SWALL:VSID_BPP4 (SWALL:P05461) (244 aa) fasta scores: E(): 0.04, 30.35% id in 56 aa, and to Salmonella typhi  phage capsid protein t4524 SWALL:AAO71969 (EMBL:AE016849) (286 aa) fasta scores: E(): 0.0029, 43.63% id in 55 aa
YP_051544.1	Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 2.6e-10, 58.73% id in 63 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 4.7e-13, 52.43% id in 82 aa. Also similar to ECA0414 (84.146% id. in 55 aa overlap), and to ECA0833 (46.000% id. in 50 aa overlap), and to ECA2599 (43.836% id. in 51 aa overlap).
YP_051545.1	Similar to Salmonella typhi hypothetical protein Sty4632 SWALL:Q8Z1E2 (EMBL:AL627283) (72 aa) fasta scores: E(): 0.00018, 51.11% id in 45 aa, and to Ralstonia solanacearum hypothetical protein rsc0956 or rs04410 SWALL:Q8Y0T7 (EMBL:AL646061) (55 aa) fasta scores: E(): 6.6, 50% id in 24 aa
YP_051547.1	Weakly similar to Staphylococcus xylosus AgrC SWALL:Q8VSW2 (EMBL:AF346729) (224 aa) fasta scores: E(): 7.1, 24.59% id in 183 aa
YP_051548.1	Similar to Xanthomonas axonopodis hypothetical protein Xac3947 SWALL:Q8PFN3 (EMBL:AE012044) (193 aa) fasta scores: E(): 2.5e-14, 33.92% id in 168 aa
YP_051549.1	Similar to Xanthomonas axonopodis hypothetical protein Xac3948 SWALL:Q8PFN2 (EMBL:AE012044) (445 aa) fasta scores: E(): 3.4e-29, 36.03% id in 419 aa
YP_051550.1	Similar to Escherichia coli O157:H7 integrase protein for prophage CP-933i z0324 or ecs0289 SWALL:Q8X7K7 (EMBL:AE005203) (410 aa) fasta scores: E(): 7.6e-123, 75.3% id in 405 aa, and to Yersinia pestis  phage integrase ypo4033 or y4052 SWALL:AAM87596 (EMBL:AJ414160) (397 aa) fasta scores: E(): 1.5e-94, 62.67% id in 367 aa
YP_051552.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_051553.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_051554.1	involved in the expression of csgBA which is involved in curli formation; interacts with sigmaS
YP_051555.1	forms a 1:1 complex with the unphosphorylated from of enzyme IIAGlc; FrsA may promote fermentation
YP_051556.1	catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively
YP_051557.1	Similar to Escherichia coli aminoacyl-histidine dipeptidase PepD or PepH or b0237 SWALL:PEPD_ECOLI (SWALL:P15288) (484 aa) fasta scores: E(): 1.4e-145, 77.27% id in 484 aa
YP_051558.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_051559.1	Similar to Rhizobium loti probable DNA-binding protein mlr2155 SWALL:Q98J14 (EMBL:AP002999) (276 aa) fasta scores: E(): 2.2e-30, 38.69% id in 261 aa, and to Bradyrhizobium japonicum Bll4672 protein bll4672 SWALL:BAC49937 (EMBL:AP005952) (282 aa) fasta scores: E(): 4.5e-47, 49.61% id in 260 aa
YP_051560.1	Similar to Shigella flexneri orf, conserved hypothetical protein yafe or sf0196 SWALL:AAN41858 (EMBL:AE015056) (256 aa) fasta scores: E(): 8.2e-58, 64.28% id in 252 aa, and to Salmonella typhi methyltransferase yafe or sty0280 SWALL:Q8Z984 (EMBL:AL627266) (256 aa) fasta scores: E(): 4.1e-54, 60.31% id in 252 aa
YP_051561.1	Similar to Yersinia pestis  exported protein ypo3241 SWALL:Q8ZBY9 (EMBL:AJ414156) (246 aa) fasta scores: E(): 8.2e-67, 67.48% id in 243 aa, and to Salmonella typhimurium, and Salmonella typhi  periplasmic protein yafk or stm0312 or sty0357 SWALL:Q8XF45 (EMBL:AE008709) (246 aa) fasta scores: E(): 8.7e-57, 56.85% id in 248 aa
YP_051562.1	Similar to Yersinia pestis hypothetical protein ypo3242 or y0948 SWALL:Q8ZBY8 (EMBL:AJ414156) (257 aa) fasta scores: E(): 9.9e-101, 86.22% id in 254 aa, and to Escherichia coli hypothetical protein yafj or b0223 SWALL:YAFJ_ECOLI (SWALL:Q47147) (255 aa) fasta scores: E(): 4.9e-95, 82.35% id in 255 aa
YP_051563.1	catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate
YP_051564.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_051565.1	Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein yajd or stm0411 or sty0449 or t2452 SWALL:YAJD_SALTY (SWALL:P40777) (115 aa) fasta scores: E(): 3.7e-46, 91.3% id in 115 aa, and to Yersinia pestis hypothetical protein Ypo1179 SWALL:Q8ZGU8 (EMBL:AJ414146) (113 aa) fasta scores: E(): 3.6e-45, 87.61% id in 113 aa
YP_051566.1	phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway
YP_051567.1	Similar to Thermotoga maritima  translation initiation factor EIF-2B tm0911 SWALL:E2B_THEMA (SWALL:Q9X013) (343 aa) fasta scores: E(): 2.1e-43, 45.02% id in 342 aa, and to Xanthomonas campestris initiation factor EIF-2B xcc1573 SWALL:Q8PAB2 (EMBL:AE012258) (354 aa) fasta scores: E(): 1.3e-40, 44.81% id in 328 aa
YP_051568.1	Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 2.3e-15, 55.31% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 1.7e-13, 53.19% id in 94 aa
YP_051569.1	Weakly similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.00056, 26.34% id in 410 aa
YP_051570.1	Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:BAC41541 (EMBL:AB088420) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa
YP_051572.1	Similar to Ralstonia solanacearum hypothetical protein rsc1499 or rs03806 SWALL:Q8XZA5 (EMBL:AL646064) (233 aa) fasta scores: E(): 6.9, 24.44% id in 180 aa
YP_051573.1	Similar to Pseudomonas aeruginosa probable oxidase pa1684 SWALL:Q9I341 (EMBL:AE004595) (181 aa) fasta scores: E(): 2.2e-40, 56.66% id in 180 aa, and to Klebsiella oxytoca E-2/E-2' protein SWALL:Q9ZFE7 (EMBL:AF102514) (179 aa) fasta scores: E(): 5.3e-50, 69.1% id in 178 aa
YP_051574.1	Similar to Klebsiella oxytoca E-1 enzyme masA SWALL:Q48389 (EMBL:U00148) (229 aa) fasta scores: E(): 5e-51, 63.71% id in 226 aa, and to Pseudomonas aeruginosa enolase-phosphatase e-1 masa or pa1685 SWALL:Q9I340 (EMBL:AE004595) (249 aa) fasta scores: E(): 4.9e-40, 55.09% id in 216 aa
YP_051575.1	catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway
YP_051576.1	catalyzes the transfer of an amino moiety
YP_051577.1	Similar to Salmonella typhimurium  amidohydrolase yafv or stm0308 SWALL:Q8ZRJ8 (EMBL:AE008709) (255 aa) fasta scores: E(): 3.3e-78, 72.94% id in 255 aa, and to Escherichia coli O157:H7  ec 3.5. amidase-type enzyme yafv or z0276 or ecs0246 SWALL:Q8X7R4 (EMBL:AE005200) (256 aa) fasta scores: E(): 7.5e-75, 70.58% id in 255 aa
YP_051578.1	allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide
YP_051579.1	Similar to Bacillus subtilis purine catabolism protein PucG SWALL:PUCG_BACSU (SWALL:O32148) (416 aa) fasta scores: E(): 1.9e-78, 52.73% id in 402 aa, and to Xanthomonas campestris serine-pyruvate aminotransferase xcc0283 SWALL:Q8PDQ2 (EMBL:AE012124) (418 aa) fasta scores: E(): 2.2e-93, 59.7% id in 407 aa
YP_051580.1	Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SWALL:GLNQ_BACST (SWALL:P27675) (242 aa) fasta scores: E(): 3.8e-43, 52.72% id in 239 aa, and to Yersinia pestis  amino acid ABC transporter, ATP-binding protein ypo3254 or glnq or y0935 SWALL:Q8ZBY0 (EMBL:AJ414156) (248 aa) fasta scores: E(): 5.2e-78, 89.79% id in 245 aa
YP_051581.1	Similar to Yersinia pestis  amino acid ABC transporter, permease protein ypo3255 or y0934 SWALL:Q8ZBX9 (EMBL:AJ414156) (217 aa) fasta scores: E(): 2.3e-76, 88.47% id in 217 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu1390 or agr_c_2569 SWALL:Q8UFK7 (EMBL:AE009100) (219 aa) fasta scores: E(): 2.6e-49, 59.9% id in 217 aa
YP_051582.1	Similar to Yersinia pestis  amino acid ABC transporter, permease protein ypo3256 or y0933 SWALL:AAM84515 (EMBL:AJ414156) (222 aa) fasta scores: E(): 1.1e-67, 79.27% id in 222 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu1389 or agr_c_2567 SWALL:Q8UFK8 (EMBL:AE009100) (223 aa) fasta scores: E(): 3.1e-43, 57.27% id in 213 aa
YP_051583.1	Similar to Yersinia pestis  amino acid ABC transporter, periplasmic protein ypo3257 or y0932 SWALL:Q8ZBX7 (EMBL:AJ414156) (262 aa) fasta scores: E(): 3.7e-73, 76.8% id in 263 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu1388 or agr_c_2566 SWALL:Q8UFK9 (EMBL:AE009100) (261 aa) fasta scores: E(): 1.1e-56, 60.85% id in 258 aa
YP_051584.1	Similar to Yersinia pestis  RpiR-family transcriptional regulatory protein ypo3259 or y0931 SWALL:Q8ZBX5 (EMBL:AJ414156) (281 aa) fasta scores: E(): 1.9e-75, 73.28% id in 277 aa, and to Rhizobium meliloti hypothetical protein r02078 r02078 or smc04363 SWALL:Q92NU4 (EMBL:AL591789) (280 aa) fasta scores: E(): 3e-21, 33.33% id in 273 aa
YP_051585.1	Similar to Xanthomonas axonopodis gamma-glutamyltranspeptidase Ggt or xac0305 SWALL:Q8PQL8 (EMBL:AE011655) (526 aa) fasta scores: E(): 1.1e-98, 53.01% id in 530 aa, and to Vibrio cholerae gamma-glutamyltranspeptidase,  vca0558 SWALL:Q9KM31 (EMBL:AE004386) (522 aa) fasta scores: E(): 2.1e-82, 48.24% id in 514 aa
YP_051586.1	Similar to Yersinia pestis hypothetical protein Ypo3260 SWALL:Q8ZBX4 (EMBL:AJ414156) (67 aa) fasta scores: E(): 3.1e-08, 55.73% id in 61 aa, and to Anabaena sp. hypothetical protein Asr1017 SWALL:Q8YY35 (EMBL:AP003584) (62 aa) fasta scores: E(): 0.018, 37.7% id in 61 aa
YP_051587.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_051588.1	Similar to Yersinia pestis hypothetical protein ypo3262 or y0927 SWALL:Q8ZBX2 (EMBL:AJ414156) (155 aa) fasta scores: E(): 2e-36, 73.17% id in 123 aa, and to Bradyrhizobium japonicum Blr1042 protein blr1042 SWALL:BAC46307 (EMBL:AP005938) (130 aa) fasta scores: E(): 3.8e-26, 57.6% id in 125 aa
YP_051589.1	Similar to Streptococcus mutans conserved hypothetical protein smu.1681C SWALL:AAN59320 (EMBL:AE014997) (124 aa) fasta scores: E(): 9.9e-24, 52.71% id in 129 aa, and to Brucella suis glyoxalase family protein br1900 SWALL:AAN30793 (EMBL:AE014480) (123 aa) fasta scores: E(): 1.4e-21, 53.9% id in 128 aa
YP_051590.1	Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV or b2677 SWALL:PROV_ECOLI (SWALL:P14175) (400 aa) fasta scores: E(): 2e-112, 80.95% id in 399 aa
YP_051591.1	with ProVX is involved in the high-affinity uptake of glycine betaine
YP_051592.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_051593.1	Similar to Bradyrhizobium japonicum Blr6576 protein Blr6576 SWALL:BAC51841 (EMBL:AP005959) (283 aa) fasta scores: E(): 3.7e-64, 55.43% id in 285 aa, and to Streptomyces coelicolor  hydrolase sco0461 or scf76.01 or scf51a.39 SWALL:CAD55442 (EMBL:AL939105) (289 aa) fasta scores: E(): 5.3e-53, 49.64% id in 280 aa
YP_051594.1	Similar to Ralstonia solanacearum hypothetical protein rsp0306 or rs05465 SWALL:Q8XT11 (EMBL:AL646077) (199 aa) fasta scores: E(): 2.7e-17, 35.13% id in 185 aa, and to Bradyrhizobium japonicum Bll6575 protein Bll6575 SWALL:BAC51840 (EMBL:AP005959) (254 aa) fasta scores: E(): 1.7e-09, 31.65% id in 199 aa
YP_051595.1	Similar to Bradyrhizobium japonicum Blr0368 protein Blr0368 SWALL:BAC45633 (EMBL:AP005936) (398 aa) fasta scores: E(): 5.2e-15, 43.73% id in 359 aa, and to Yersinia pestis hypothetical protein ypo1149 or y3033 SWALL:Q8ZGX4 (EMBL:AJ414146) (334 aa) fasta scores: E(): 3.3e-12, 36.31% id in 347 aa
YP_051596.1	Similar to Yersinia pestis probable sugar transporter ypo3263 or y0926 SWALL:AAM84508 (EMBL:AJ414156) (399 aa) fasta scores: E(): 1.2e-102, 78.21% id in 381 aa, and to Salmonella typhi transmembrane transport protein sty2938 SWALL:Q8Z4E1 (EMBL:AL627276) (394 aa) fasta scores: E(): 1.5e-100, 74.11% id in 394 aa
YP_051597.1	Similar to Yersinia pestis  amino acid transporter ypo3264 or y0925 SWALL:Q8ZBX0 (EMBL:AJ414156) (257 aa) fasta scores: E(): 1.6e-68, 75.86% id in 232 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z3983 or ecs3544 SWALL:Q8X908 (EMBL:AE005497) (245 aa) fasta scores: E(): 8.5e-63, 71.3% id in 230 aa
YP_051598.1	Similar to Erwinia chrysanthemi YgaH protein YgaH SWALL:Q93KB3 (EMBL:AJ410307) (113 aa) fasta scores: E(): 5.6e-31, 72.97% id in 111 aa, and to Yersinia pestis membrane protein ypo3265 or y0924 SWALL:Q8ZBW9 (EMBL:AJ414156) (113 aa) fasta scores: E(): 7.9e-28, 65.13% id in 109 aa
YP_051599.1	DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux; negative regulator of the multidrug operon emrAB
YP_051600.1	Similar to Erwinia chrysanthemi EmrA protein EmrA SWALL:Q93KB1 (EMBL:AJ410307) (391 aa) fasta scores: E(): 7.9e-104, 72.63% id in 391 aa, and to Escherichia coli multidrug resistance protein A EmrA or b2685 SWALL:EMRA_ECOLI (SWALL:P27303) (390 aa) fasta scores: E(): 5.7e-94, 68.28% id in 391 aa
YP_051601.1	Similar to Escherichia coli, and Escherichia coli O157:H7 multidrug resistance protein B EmrB or b2686 or z3987 or ecs3548 SWALL:EMRB_ECOLI (SWALL:P27304) (512 aa) fasta scores: E(): 5.1e-176, 83.92% id in 510 aa
YP_051602.1	Similar to Escherichia coli, and Escherichia coli O6 nucleoside permease NupC or Cru or b2393 or c2932 SWALL:NUPC_ECOLI (SWALL:P33031) (400 aa) fasta scores: E(): 1.2e-105, 71.75% id in 400 aa
YP_051603.1	Similar to Pseudomonas syringae lipoprotein, pspto3094 SWALL:Q880Q8 (EMBL:AE016867) (153 aa) fasta scores: E(): 3e-09, 34.96% id in 143 aa, and to Xanthomonas campestris hypothetical protein Xcc3078 SWALL:Q8P692 (EMBL:AE012422) (146 aa) fasta scores: E(): 5.7e-12, 45.94% id in 111 aa
YP_051604.1	Similar to Erwinia chrysanthemi YfiF protein YfiF SWALL:Q93KA9 (EMBL:AJ410308) (366 aa) fasta scores: E(): 4.2e-86, 72.06% id in 383 aa, and to Yersinia pestis tRNA/rRNA methyltransferase yfif or ypo3269 SWALL:Q8ZBW5 (EMBL:AJ414156) (388 aa) fasta scores: E(): 4.4e-89, 67.76% id in 394 aa
YP_051605.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri thioredoxin 2 TrxC or b2582 or c3107 or z3867 or ecs3448 or sf2644 SWALL:THI2_ECOLI (SWALL:P33636) (139 aa) fasta scores: E(): 1.5e-43, 74.81% id in 139 aa
YP_051606.1	Similar to Yersinia pestis hypothetical protein ypo3271 or y0918 SWALL:AAM84500 (EMBL:AJ414156) (249 aa) fasta scores: E(): 4.6e-56, 66.51% id in 218 aa, and to Shigella flexneri orf, conserved hypothetical protein yfip or sf2645 SWALL:AAN44141 (EMBL:AE015279) (249 aa) fasta scores: E(): 8.3e-54, 60.85% id in 235 aa
YP_051607.1	Similar to Yersinia pestis  acetyltransferase ypo3272 SWALL:Q8ZBW2 (EMBL:AJ414156) (880 aa) fasta scores: E(): 0, 79.56% id in 881 aa, and to Escherichia coli hypothetical protein yfiq or b2584 SWALL:YFIQ_ECOLI (SWALL:P76594) (886 aa) fasta scores: E(): 0, 76.84% id in 881 aa
YP_051608.1	catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome
YP_051609.1	Similar to Escherichia coli O6 hypothetical protein yfim or c3111 SWALL:Q8FF03 (EMBL:AE016764) (114 aa) fasta scores: E(): 3.8e-26, 56.36% id in 110 aa, and to Salmonella typhi hypothetical protein yfim or t0257 SWALL:AAO67983 (EMBL:AE016834) (107 aa) fasta scores: E(): 3.3e-25, 60% id in 105 aa
YP_051610.1	Similar to Escherichia coli, and Shigella flexneri alpha-ketoglutarate permease KgtP or WitA or b2587 or sf2649 SWALL:KGTP_ECOLI (SWALL:P17448) (432 aa) fasta scores: E(): 9.2e-143, 82.31% id in 424 aa
YP_051611.1	Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate
YP_051612.1	part of the metNIQ transport system for methionine
YP_051613.1	part of the MetNIQ methionine uptake system
YP_051614.1	Similar to Escherichia coli D-methionine-binding lipoprotein MetQ precursor MetQ or b0197 SWALL:METQ_ECOLI (SWALL:P28635) (271 aa) fasta scores: E(): 3.6e-88, 87.82% id in 271 aa
YP_051615.1	Similar to Escherichia coli, and Escherichia coli O6 protein RcsF or b0196 or c0237 SWALL:RCSF_ECOLI (SWALL:P28633) (134 aa) fasta scores: E(): 6e-20, 56.61% id in 136 aa, and to Yersinia pestis  lipoprotein RcsF or ypo1070 or y3107 SWALL:AAM86657 (EMBL:AJ414146) (135 aa) fasta scores: E(): 1.4e-21, 60.14% id in 138 aa
YP_051616.1	Similar to Yersinia pestis hypothetical protein ypo1069 or y3108 SWALL:Q8ZH42 (EMBL:AJ414146) (235 aa) fasta scores: E(): 1.1e-77, 80.34% id in 234 aa, and to Escherichia coli O6 hypothetical protein yaeb or c0236 SWALL:AAN78728 (EMBL:AE016755) (235 aa) fasta scores: E(): 1e-64, 69.65% id in 234 aa
YP_051617.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_051618.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses
YP_051619.1	outer membrane lipoprotein involved in stationary-phase cell survival; similar to LppB virulence determinant from Haemophilus somnus
YP_051620.1	catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins
YP_051621.1	catalyzes the modification of U13 in tRNA(Glu)
YP_051622.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_051623.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_051624.1	forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein
YP_051625.1	Similar to Neisseria gonorrhoeae histidine-binding protein precursor HisJ SWALL:HISJ_NEIGO (SWALL:Q06758) (268 aa) fasta scores: E(): 6.2e-32, 40.4% id in 250 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamine-binding periplasmic protein precursor GlnH or b0811 or c0896 or z1033 or ecs0889 SWALL:GLNH_ECOLI (SWALL:P10344) (248 aa) fasta scores: E(): 1e-19, 33.61% id in 235 aa
YP_051626.1	Similar to Clostridium perfringens probable amino acid ABC transporter cpe0601 SWALL:Q8XMT7 (EMBL:AP003187) (223 aa) fasta scores: E(): 2.4e-22, 38.64% id in 251 aa, and to Rhizobium loti amino acid ABC transporter, permease protein mll4276 SWALL:Q98EE7 (EMBL:AP003003) (269 aa) fasta scores: E(): 1.2e-21, 31.53% id in 241 aa
YP_051627.1	Similar to Methanosarcina mazei glutamine transporter, ATP-binding protein GlnQ or mm1941 SWALL:Q8PVM2 (EMBL:AE013431) (240 aa) fasta scores: E(): 2e-55, 67.5% id in 240 aa, and to Oceanobacillus iheyensis glutamine ABC transporter ATP-binding protein ob1006 SWALL:Q8CUV1 (EMBL:AP004596) (240 aa) fasta scores: E(): 8.9e-55, 64.16% id in 240 aa
YP_051628.1	Similar to Yersinia pestis  membrane protein ypo3363 SWALL:Q8ZBP4 (EMBL:AJ414156) (105 aa) fasta scores: E(): 8.9e-24, 60.9% id in 110 aa, and to Klebsiella aerogenes YgbE SWALL:Q9EYY2 (EMBL:AF308468) (118 aa) fasta scores: E(): 5.4e-15, 47.32% id in 112 aa
YP_051629.1	converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis
YP_051630.1	may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ
YP_051631.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_051632.1	Similar to Escherichia coli, and Escherichia coli O157:H7 siroheme synthase [includes: uroporphyrin-III C-methyltransferase; precorrin-2 oxidase; ferrochelatase] CysG or b3368 or z4729 or ecs4219 SWALL:CYSG_ECOLI (SWALL:P11098) (457 aa) fasta scores: E(): 9.1e-87, 56.15% id in 463 aa
YP_051633.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_051634.1	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
YP_051635.1	catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity
YP_051636.1	Similar to Xanthomonas campestris hypothetical protein Xcc0350 SWALL:Q8PDI8 (EMBL:AE012131) (413 aa) fasta scores: E(): 6.6e-09, 25.67% id in 261 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4108 SWALL:Q9HWS0 (EMBL:AE004827) (414 aa) fasta scores: E(): 3.4e-08, 25.81% id in 275 aa
YP_051637.1	Similar to Vibrio vulnificus response regulator VieA vv21511 SWALL:AAO08375 (EMBL:AE016813) (386 aa) fasta scores: E(): 5.5e-16, 30.04% id in 233 aa, and to Anabaena sp. two-component response regulator alr1230 SWALL:Q8YXI3 (EMBL:AP003585) (403 aa) fasta scores: E(): 7.6e-16, 30.35% id in 224 aa
YP_051639.1	Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 8.1e-98, 56.7% id in 425 aa, and to Yersinia pestis  sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-93, 55.47% id in 411 aa. Also similar to ECA2406 (TogB) (56.398% id) and to ECA2210 (47.442% id)
YP_051640.1	Similar to Prevotella ruminicola polygalacturonase SWALL:Q9WXE7 (EMBL:AB022865) (494 aa) fasta scores: E(): 3.9e-17, 23.87% id in 423 aa, and to Agrobacterium tumefaciens polygalacturonase atu4560 or agr_l_619 SWALL:Q8U794 (EMBL:AE009384) (453 aa) fasta scores: E(): 2.8e-56, 36.03% id in 444 aa
YP_051641.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri  6-pyruvoyl tetrahydrobiopterin synthase YgcM or b2765 or z4075 or ecs3620 or sf2781 SWALL:PTPS_ECOLI (SWALL:Q46903) (121 aa) fasta scores: E(): 8.1e-44, 86.66% id in 120 aa
YP_051642.1	Similar to Salmonella typhimurium, and Salmonella typhi  organic radical activating enzymes ygcf or stm2951 or sty3080 SWALL:Q8XEY5 (EMBL:AE008835) (223 aa) fasta scores: E(): 1.3e-75, 81.16% id in 223 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ygcf ygcf or b2777 or z4089 or ecs3633 or sf2790 SWALL:YGCF_ECOLI (SWALL:P55139) (223 aa) fasta scores: E(): 2.8e-75, 80.71% id in 223 aa
YP_051643.1	Similar to Erwinia chrysanthemi metallo hydrolase precursor Meh SWALL:CAC83617 (EMBL:AJ292045) (324 aa) fasta scores: E(): 8.6e-80, 65.64% id in 326 aa, and to Plesiomonas sp. M6 methyl parathion hydrolase Mpd SWALL:Q9ALW1 (EMBL:AF338729) (331 aa) fasta scores: E(): 1.8e-46, 47.5% id in 320 aa. Also similar to ECA3557 (52.761% id. in 326 aa overlap)
YP_051644.1	Similar to Pseudomonas aeruginosa MexT protein MexT SWALL:O87785 (EMBL:AJ007825) (304 aa) fasta scores: E(): 3.2e-33, 36.3% id in 303 aa, and to Burkholderia cepacia DntR SWALL:Q8VUD7 (EMBL:AF169302) (301 aa) fasta scores: E(): 5.8e-33, 35.88% id in 301 aa
YP_051645.1	Similar to Erwinia chrysanthemi metallo hydrolase precursor Meh SWALL:CAC83617 (EMBL:AJ292045) (324 aa) fasta scores: E(): 1.8e-68, 56% id in 325 aa, and to Plesiomonas sp. DLL-1 methyl parathion degrading protein SWALL:Q93SP1 (EMBL:AY029773) (341 aa) fasta scores: E(): 5e-49, 47.41% id in 310 aa. Also similar to ECA3555 (52.761% id. in 326 aa overlap)
YP_051646.1	Similar to Photorhabdus luminescens Orf29 SWALL:AAO17195 (EMBL:AF346500) (248 aa) fasta scores: E(): 6e-74, 81.04% id in 248 aa, and to Escherichia coli hypothetical oxidoreductase ygff or b2902 SWALL:YGFF_ECOLI (SWALL:P52037) (247 aa) fasta scores: E(): 1.5e-55, 63.26% id in 245 aa
YP_051647.1	Similar to Erwinia chrysanthemi RhiN protein RhiN SWALL:CAC83616 (EMBL:AJ292045) (379 aa) fasta scores: E(): 9e-146, 87.07% id in 379 aa, and to Salmonella typhimurium cytoplasmic protein stm1911 SWALL:Q8ZNU8 (EMBL:AE008785) (379 aa) fasta scores: E(): 1.5e-128, 75.72% id in 379 aa. Also similar to ECA3749 (43.810% id. in 315 aa overlap)
YP_051648.1	Similar to Erwinia chrysanthemi oligogalacturonide transporter TogT SWALL:Q93KC2 (EMBL:AJ305143) (508 aa) fasta scores: E(): 1.2e-83, 42% id in 519 aa. Also similar to ECA0817 (TogT) (40.426% id. in 517 aa overlap)
YP_051649.1	Similar to Streptomyces antibioticus transcriptional regulatory protein AraB AbaB SWALL:ARAB_STRAT (SWALL:P52659) (301 aa) fasta scores: E(): 4e-16, 32.78% id in 302 aa, and to Streptomyces coelicolor  LysR-family transcriptional regulator sco6801 or sc1a2.10 SWALL:Q9L231 (EMBL:AL939129) (300 aa) fasta scores: E(): 1.2e-09, 30.9% id in 288 aa
YP_051650.1	Similar to Pseudomonas sp. coniferyl aldehyde dehydrogenase CalB SWALL:CALB_PSESP (SWALL:O86447) (480 aa) fasta scores: E(): 1.4e-97, 55.5% id in 463 aa, and to Caulobacter crescentus probable coniferyl aldehyde dehydrogenase CalB or cc1849 SWALL:CALB_CAUCR (SWALL:Q9A777) (485 aa) fasta scores: E(): 2.5e-85, 50.96% id in 467 aa
YP_051651.1	Similar to Xanthomonas axonopodis nonf-related protein NonF or xac3491 SWALL:Q8PGX1 (EMBL:AE011997) (226 aa) fasta scores: E(): 1.8e-58, 68.77% id in 221 aa, and to Rhizobium meliloti hypothetical protein rb0205 or smb20212 SWALL:Q92WX2 (EMBL:AL603642) (226 aa) fasta scores: E(): 3.3e-57, 66.96% id in 224 aa
YP_051652.1	Similar to Escherichia coli iron-chelating periplasmic-binding protein SWALL:Q8VR80 (EMBL:AF447814) (332 aa) fasta scores: E(): 7.3e-53, 47.19% id in 303 aa, and to Methanosarcina acetivorans iron ma1222 SWALL:Q8TRF8 (EMBL:AE010789) (365 aa) fasta scores: E(): 1.2e-30, 33.72% id in 338 aa
YP_051653.1	Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor fcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.8e-42, 29.09% id in 787 aa, and to Escherichia coli O6 hypothetical protein c0294 or c2518 SWALL:AAN80973 (EMBL:AE016755) (721 aa) fasta scores: E(): 1.5e-160, 57.22% id in 720 aa
YP_051654.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_051655.1	CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_051656.1	functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era
YP_051657.1	(p)ppGpp synthetase; catalyzes the formation of pppGpp and ppGpp from ATP and GTP or GDP
YP_051658.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_051659.1	part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system
YP_051660.1	Similar to Escherichia coli glycerate kinase 2 GarK or b3124 SWALL:GRK2_ECOLI (SWALL:P23524) (381 aa) fasta scores: E(): 6.4e-89, 70.5% id in 373 aa, and to Bacillus subtilis glycerate kinase GalxK or s14A SWALL:GRK_BACSU (SWALL:P42100) (382 aa) fasta scores: E(): 3.9e-78, 58.57% id in 379 aa
YP_051661.1	catalyzes the reduction of tartronate semialdehyde to glycerate
YP_051662.1	cleaves 5-dehydro-4-deoxy-glucarate and 2-dehydro-3-deoxy-D-glucarate
YP_051663.1	Similar to Escherichia coli, and Escherichia coli O157:H7 glucarate dehydratase GudD or b2787 or z4102 or ecs3647 SWALL:GUDH_ECOLI (SWALL:P76637) (445 aa) fasta scores: E(): 2.3e-156, 84.87% id in 443 aa
YP_051664.1	Similar to Escherichia coli glucarate dehydratase related protein GudX or b2788 SWALL:GUDX_ECOLI (SWALL:Q46915) (446 aa) fasta scores: E(): 1.7e-152, 81.83% id in 446 aa
YP_051665.1	Similar to Escherichia coli probable glucarate transporter GudP or b2789 SWALL:GUDP_ECOLI (SWALL:Q46916) (450 aa) fasta scores: E(): 3.5e-148, 80.49% id in 446 aa
YP_051666.1	Similar to Escherichia coli D-galactarate dehydratase GarD or b3128 SWALL:GARD_ECOLI (SWALL:P39829) (523 aa) fasta scores: E(): 1.3e-177, 85.65% id in 516 aa
YP_051667.1	Similar to Escherichia coli aerotaxis receptor Aer or Air or b3072 SWALL:AER_ECOLI (SWALL:P50466) (506 aa) fasta scores: E(): 3.8e-72, 44.13% id in 503 aa, and to Yersinia pestis  methyl-accepting chemotaxis protein ypo1644 SWALL:Q8ZFP9 (EMBL:AJ414149) (526 aa) fasta scores: E(): 1.2e-89, 53.01% id in 515 aa
YP_051668.1	Similar to Yersinia pestis  exported protein ypo2987 SWALL:Q8ZCJ8 (EMBL:AJ414154) (115 aa) fasta scores: E(): 0.012, 31.66% id in 120 aa, and to Escherichia coli protein FlxA or b1566 SWALL:FLXA_ECOLI (SWALL:P77609) (110 aa) fasta scores: E(): 0.94, 27.35% id in 117 aa. Also similar to ECA3581 (48.624% id. in 109 aa overlap)
YP_051669.1	Similar to Yersinia pestis  exported protein ypo2987 SWALL:Q8ZCJ8 (EMBL:AJ414154) (115 aa) fasta scores: E(): 2.7e-07, 39.66% id in 121 aa, and to Escherichia coli protein FlxA or b1566 SWALL:FLXA_ECOLI (SWALL:P77609) (110 aa) fasta scores: E(): 0.075, 28.81% id in 118 aa. Also similar to ECA3580 (48.624% id. in 109 aa overlap)
YP_051670.1	Similar to Yersinia pestis hypothetical protein Ypo2988 SWALL:Q8ZCJ7 (EMBL:AJ414154) (71 aa) fasta scores: E(): 8.4e-21, 79.7% id in 69 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ypeb or b2410.1 or z3676 or ecs3282.1 SWALL:YPEB_ECOLI (SWALL:P56604) (72 aa) fasta scores: E(): 8.5e-21, 80.28% id in 71 aa
YP_051671.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_051672.1	catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose
YP_051673.1	catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme
YP_051674.1	Similar to Yersinia pestis hypothetical protein Ypo0652 SWALL:Q8ZI62 (EMBL:AJ414144) (435 aa) fasta scores: E(): 2.2e-84, 51.13% id in 442 aa, and to Escherichia coli hypothetical protein ygif or b3054 SWALL:YGIF_ECOLI (SWALL:P30871) (433 aa) fasta scores: E(): 2.1e-80, 48.86% id in 442 aa
YP_051675.1	Similar to Yersinia pestis  exported protein ypo0651 or y3528 SWALL:Q8ZI63 (EMBL:AJ414144) (207 aa) fasta scores: E(): 2.5e-57, 76.69% id in 206 aa, and to Salmonella typhimurium, and Salmonella typhi  sh3 domain protein ygim or stm3203 or sty3382 SWALL:Q8XFH7 (EMBL:AE008847) (204 aa) fasta scores: E(): 1.4e-51, 71.84% id in 206 aa
YP_051676.1	catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases
YP_051677.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_051678.1	catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin and can also catalyze the epimerization of carbon 2' of dihydroneopterin and dihydromonapterin
YP_051679.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_051680.1	Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 5.9e-60, 42.5% id in 527 aa
YP_051681.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_051682.1	Similar to Yersinia pestis hypothetical protein ypo3522 or y0662 SWALL:Q8ZB97 (EMBL:AJ414157) (118 aa) fasta scores: E(): 9.8e-33, 71.05% id in 114 aa, and to Salmonella typhi hypothetical protein ytfp or t4465 SWALL:AAO71912 (EMBL:AE016849) (114 aa) fasta scores: E(): 1.3e-27, 62.83% id in 113 aa
YP_051683.1	Similar to Yersinia pestis  exported protein ypo3523 or y0661 SWALL:Q8ZB96 (EMBL:AJ414157) (1305 aa) fasta scores: E(): 0, 65.19% id in 1313 aa, and to Salmonella typhi  exported protein ytfn or sty4769 SWALL:Q8Z149 (EMBL:AL627283) (1259 aa) fasta scores: E(): 0, 57.79% id in 1315 aa
YP_051684.1	Similar to Yersinia pestis  exported protein ypo3524 or y0659 SWALL:Q8ZB95 (EMBL:AJ414157) (578 aa) fasta scores: E(): 6.1e-181, 74.48% id in 580 aa, and to Salmonella typhimurium, and Salmonella typhi  outer membrane protein ytfm or stm4409 or sty4768 SWALL:Q8XEL5 (EMBL:AE008906) (577 aa) fasta scores: E(): 6.6e-173, 71.55% id in 573 aa
YP_051685.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_051686.1	Similar to Yersinia pestis  membrane protein ypo3526 or y0657 SWALL:Q8ZB93 (EMBL:AJ414157) (443 aa) fasta scores: E(): 5.8e-144, 84.38% id in 442 aa, and to Salmonella typhimurium, and Salmonella typhi hemolysin-related protein ytfl or stm4407 or sty4766 SWALL:Q8XG66 (EMBL:AE008906) (447 aa) fasta scores: E(): 2.9e-135, 78.81% id in 439 aa
YP_051687.1	Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ytfk or b4217 or c5315 SWALL:YTFK_ECOLI (SWALL:P39318) (68 aa) fasta scores: E(): 2.1e-19, 79.1% id in 67 aa, and to Yersinia pestis hypothetical protein ypo3527 or y0656 SWALL:AAM84244 (EMBL:AJ414157) (70 aa) fasta scores: E(): 6.1e-19, 77.27% id in 66 aa
YP_051688.1	Similar to Yersinia pestis  exported protein ypo3528 SWALL:Q8ZB91 (EMBL:AJ414157) (187 aa) fasta scores: E(): 2.2e-43, 64.76% id in 193 aa, and to Salmonella typhimurium  transcriptional regulator ytfj or stm4405 SWALL:Q8ZK73 (EMBL:AE008906) (185 aa) fasta scores: E(): 2.7e-42, 68.42% id in 171 aa
YP_051689.1	catalyzes the formation of AMP from adenosine-3',5'-bisphosphate
YP_051690.1	periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_051691.1	Similar to Agrobacterium tumefaciens flavodoxin WrbA or atu4201 or agr_l_1309 SWALL:Q8U897 (EMBL:AE009349) (193 aa) fasta scores: E(): 1.2e-43, 65.73% id in 178 aa, and to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9F7X7 (EMBL:AF270497) (183 aa) fasta scores: E(): 3.8e-49, 69.78% id in 182 aa
YP_051692.1	Similar to Yersinia pestis  exported protein ypo2981 SWALL:Q8ZCK3 (EMBL:AJ414154) (137 aa) fasta scores: E(): 7.6e-20, 42.3% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi  periplasmic protein ypec or stm2407 or sty2648 SWALL:Q8XFD1 (EMBL:AE008808) (108 aa) fasta scores: E(): 1.2e-08, 37.16% id in 113 aa
YP_051693.1	Similar to Enterobacter cloacae indole-3-pyruvate decarboxylase IpdC SWALL:DCIP_ENTCL (SWALL:P23234) (552 aa) fasta scores: E(): 1.6e-115, 55.39% id in 556 aa, and to Salmonella typhimurium  indole-3-pyruvate decarboxylase Ipd or stm2405 SWALL:Q93IM7 (EMBL:AJ401270) (550 aa) fasta scores: E(): 6.1e-118, 55.27% id in 559 aa
YP_051694.1	Involved in anaerobic NO protection and iron metabolism
YP_051695.1	FKBP-type; rotamase; catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
YP_051696.1	Similar to Yersinia pestis hypothetical protein ypo3533 or y0650 SWALL:Q8ZB86 (EMBL:AJ414157) (246 aa) fasta scores: E(): 7.2e-27, 42.8% id in 250 aa, and to Shigella flexneri orf, conserved hypothetical protein ytfb or sf4280 SWALL:AAN45698 (EMBL:AE015436) (193 aa) fasta scores: E(): 9e-23, 43.93% id in 198 aa
YP_051697.1	Similar to Corynebacterium efficiens conserved hypothetical protein ce0815 SWALL:BAC17625 (EMBL:AP005216) (119 aa) fasta scores: E(): 1.1e-17, 48.27% id in 116 aa, and to Rhizobium leguminosarum hypothetical 13.6 kDa protein SWALL:Q93EB8 (EMBL:AF361470) (115 aa) fasta scores: E(): 2.4e-16, 44.54% id in 110 aa
YP_051698.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_051699.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_051700.1	binds single-stranded DNA at the primosome assembly site
YP_051701.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_051702.1	YjfP; esterase activity towards palmitoyl-CoA and pNP-butyrate in vitro; unknown function and substrate in vivo
YP_051703.1	Similar to Ralstonia solanacearum  methyl-accepting chemotaxis transmembrane protein rsc3136 or rs00467 SWALL:Q8XUQ0 (EMBL:AL646073) (661 aa) fasta scores: E(): 2.9e-68, 39.38% id in 645 aa, and to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.9e-38, 44.34% id in 318 aa
YP_051704.1	mutations in this gene result in a compromised ability for drug-inducible mexXY expression; expression is inducible by the same ribosome-targeting agents that induce mexXY
YP_051705.1	similar to release factor 1 and 2
YP_051707.1	in Escherichia coli, mutation of this gene affects biofilm maturation, stress response, and motility
YP_051708.1	Similar to Salmonella typhimurium  inner membrane protein yjfl or stm4374 SWALL:Q8ZK97 (EMBL:AE008905) (132 aa) fasta scores: E(): 2.3e-31, 63.63% id in 132 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yjfl yjfl or b4184 or z5791 or ecs5160 SWALL:YJFL_ECOLI (SWALL:P39294) (132 aa) fasta scores: E(): 6.8e-31, 61.36% id in 132 aa
YP_051709.1	Specifically methylates the ribose of guanosine 2251 in 23S rRNA
YP_051710.1	3'-5'exoribonuclease that acts nonspecifically on poly(A), poly(U) and ribosomal RNAs
YP_051711.1	negatively regulates the transcription of genes upregulated by nitrosative stress
YP_051712.1	Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.8e-51, 37.21% id in 524 aa
YP_051713.1	Similar to Agrobacterium tumefaciens McpA SWALL:O68016 (EMBL:AF010180) (579 aa) fasta scores: E(): 1.9e-31, 36.54% id in 249 aa, and to Xanthomonas axonopodis chemotaxis protein mcpa or xac1746 SWALL:Q8PLP7 (EMBL:AE011806) (684 aa) fasta scores: E(): 1.3e-35, 36.56% id in 268 aa
YP_051714.1	Similar to Escherichia coli hypothetical protein yggr or b2950 SWALL:YGGR_ECOLI (SWALL:P52052) (326 aa) fasta scores: E(): 4e-63, 60.67% id in 328 aa, and to Yersinia pestis hypothetical protein Ypo0940 SWALL:Q8ZHF9 (EMBL:AJ414145) (358 aa) fasta scores: E(): 1.4e-65, 60.92% id in 325 aa
YP_051715.1	Similar to Yersinia pestis hypothetical protein Ypo0941 SWALL:Q8ZHF8 (EMBL:AJ414145) (232 aa) fasta scores: E(): 3.2e-62, 72.65% id in 234 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical upf0001 protein yggs or b2951 or c3537 or z4296 or ecs3826 SWALL:YGGS_ECOLI (SWALL:P52054) (234 aa) fasta scores: E(): 2.5e-61, 71.67% id in 233 aa
YP_051716.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_051717.1	Similar to Yersinia pestis  membrane protein ypo0943 or y3329 SWALL:Q8ZHF6 (EMBL:AJ414145) (184 aa) fasta scores: E(): 5.8e-58, 78.26% id in 184 aa, and to Vibrio cholerae hypothetical protein Vc0459 SWALL:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 2.3e-42, 56.21% id in 185 aa
YP_051718.1	Similar to Salmonella typhi hypothetical upf0235 protein yggu or sty3255 or t3014 SWALL:AAO70566 (EMBL:AL627277) (96 aa) fasta scores: E(): 1.1e-27, 78.12% id in 96 aa, and to Escherichia coli hypothetical upf0235 protein yggu or b2953 SWALL:YGGU_ECOLI (SWALL:P52060) (96 aa) fasta scores: E(): 2.6e-26, 76.84% id in 95 aa
YP_051719.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_051720.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_051721.1	Similar to Salmonella typhi hypothetical protein Sty3093 SWALL:Q8Z448 (EMBL:AL627276) (118 aa) fasta scores: E(): 4.3e-20, 75.94% id in 79 aa, and to Vibrio cholerae hypothetical protein Vca0360.1 SWALL:YV6A_VIBCH (SWALL:P58093) (80 aa) fasta scores: E(): 1.5e-05, 42.85% id in 77 aa
YP_051722.1	Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1135 SWALL:Q8YAW6 (EMBL:AE009745) (297 aa) fasta scores: E(): 5.1e-26, 30.66% id in 287 aa, and to Rhizobium meliloti transcription regulator protein r02876 or smc02984 SWALL:Q92LY6 (EMBL:AL591792) (297 aa) fasta scores: E(): 2.4e-28, 33.33% id in 288 aa
YP_051723.1	Similar to Azotobacter vinelandii AvxA SWALL:Q8KY99 (EMBL:AF238500) (407 aa) fasta scores: E(): 2.7e-19, 26.28% id in 388 aa, and to Aeromonas hydrophila multidrug-resistance protein SWALL:Q9LAA0 (EMBL:AF146029) (409 aa) fasta scores: E(): 4.7e-19, 26.98% id in 404 aa
YP_051724.1	Similar to Proteus vulgaris hypothetical protein orf158 SWALL:Q8KK19 (EMBL:AP004237) (205 aa) fasta scores: E(): 1.4e-44, 59.02% id in 205 aa
YP_051725.1	Similar to Streptococcus thermophilus bacteriophage TP-J34  host cell surface-exposed lipoprotein SWALL:O48388 (EMBL:AF020798) (142 aa) fasta scores: E(): 5.6, 22.9% id in 131 aa
YP_051726.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 entericidin a precursor EcnA or b4147.1 or c5234 or z5753 or ecs5128.1 SWALL:ECNA_ECOLI (SWALL:P56548) (41 aa) fasta scores: E(): 4e-07, 58.14% id in 43 aa
YP_051727.1	Similar to Salmonella typhimurium, and Salmonella typhi  acyltransferase ElaA or stm2312 or sty2543 SWALL:Q8XG97 (EMBL:AE008803) (153 aa) fasta scores: E(): 1.5e-28, 54.54% id in 143 aa, and to Escherichia coli, and Shigella flexneri protein ElaA or b2267 or sf2346 SWALL:ELAA_ECOLI (SWALL:P52077) (153 aa) fasta scores: E(): 1.5e-27, 51.74% id in 143 aa
YP_051728.1	Similar to Yersinia pestis  membrane protein ypo0792 or y3180 SWALL:Q8ZHU2 (EMBL:AJ414144) (406 aa) fasta scores: E(): 8.3e-111, 76.72% id in 391 aa, and to Salmonella typhimurium  efflux protein, resistance protein yged or stm3009 SWALL:Q8ZMA5 (EMBL:AE008838) (400 aa) fasta scores: E(): 2e-108, 75.31% id in 401 aa
YP_051729.1	Transfers fatty acids to the 1-position via an enzyme-bound acyl-ACP intermediate in the presence of ATP and magnesium. Its physiological function is to regenerate phosphatidylethanolamine from 2-acyl-glycero-3-phosphoethanolamine (2-acyl-GPE) formed by transacylation reactions or degradation by phospholipase A1
YP_051730.1	Similar to Rahnella aquatilis  methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 7.3e-64, 42.31% id in 553 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein II Tar or CheM or stm1919 SWALL:MCP2_SALTY (SWALL:P02941) (553 aa) fasta scores: E(): 4.3e-56, 41.27% id in 550 aa
YP_051731.1	Similar to Shewanella oneidensis acetyltransferase, GnaT family so4489 SWALL:AAN57454 (EMBL:AE015881) (154 aa) fasta scores: E(): 3.8e-09, 28.28% id in 152 aa, and to Agrobacterium tumefaciens hypothetical protein atu2342 or agr_c_4255 SWALL:Q8UCY6 (EMBL:AE009183) (171 aa) fasta scores: E(): 4.2e-08, 30.88% id in 136 aa
YP_051732.1	Similar to Escherichia coli uxu operon transcriptional regulator UxuR or b4324 SWALL:UXUR_ECOLI (SWALL:P39161) (257 aa) fasta scores: E(): 3.4e-39, 48.58% id in 247 aa, and to Yersinia pestis  transcriptional regulatory protein ypo1279 or uxur or y2904 SWALL:Q8ZGL0 (EMBL:AJ414147) (266 aa) fasta scores: E(): 3.5e-46, 51.98% id in 252 aa
YP_051733.1	Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 2.9e-11, 46% id in 100 aa
YP_051734.1	Similar to Bacillus pumilus 6-phospho-beta-glucosidase CelH SWALL:Q8KP27 (EMBL:AY124778) (466 aa) fasta scores: E(): 5.1e-82, 42.98% id in 463 aa
YP_051735.1	Similar to Bacillus subtilis PTS system, lichenan-specific IIc component LicC or CelB SWALL:PTCC_BACSU (SWALL:P46317) (452 aa) fasta scores: E(): 3.3e-46, 33.7% id in 448 aa
YP_051736.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 6.3e-14, 43.86% id in 114 aa
YP_051737.1	Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 1.1e-52, 46.22% id in 331 aa
YP_051738.1	Similar to Salmonella typhi  DNA-binding protein sty3832 SWALL:Q8Z2V1 (EMBL:AL627279) (188 aa) fasta scores: E(): 2.3e-32, 53.37% id in 178 aa, and to Agrobacterium tumefaciens Tiorf88 protein tiorf88 SWALL:Q9R6H1 (EMBL:AB016260) (163 aa) fasta scores: E(): 1e-21, 42.5% id in 160 aa
YP_051739.1	Similar to Rhizobium loti hypothetical protein Mlr3911 SWALL:Q98F65 (EMBL:AP003003) (301 aa) fasta scores: E(): 5.7e-63, 58.68% id in 288 aa, and to Pseudomonas putida membrane protein,  pp4307 SWALL:AAN69887 (EMBL:AE016790) (307 aa) fasta scores: E(): 2.2e-59, 54.86% id in 288 aa
YP_051740.1	catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding
YP_051741.1	activates the transcription of the lysA gene encoding diaminopimelate decarboxylase
YP_051742.1	Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 3e-85, 71.38% id in 297 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 5e-70, 61.27% id in 297 aa
YP_051743.1	Similar to Yersinia pestis  exported protein ypo0800 SWALL:Q8ZHT4 (EMBL:AJ414144) (295 aa) fasta scores: E(): 1.1e-70, 64.84% id in 293 aa, and to Shewanella oneidensis metallo-beta-lactamase family protein so3474 SWALL:AAN56467 (EMBL:AE015783) (299 aa) fasta scores: E(): 4.7e-56, 52.06% id in 290 aa
YP_051744.1	Similar to Yersinia pestis hypothetical protein ypo0801 or y3189 SWALL:Q8ZHT3 (EMBL:AJ414144) (211 aa) fasta scores: E(): 9.3e-45, 55.23% id in 210 aa, and to Ralstonia solanacearum hypothetical protein rsc1444 or rs03863 SWALL:Q8XZF7 (EMBL:AL646064) (242 aa) fasta scores: E(): 1e-44, 52.29% id in 218 aa
YP_051747.1	Similar to Escherichia coli O6 conserved hypothetical protein c5426 SWALL:Q8FA84 (EMBL:AE016772) (557 aa) fasta scores: E(): 3.9e-29, 25.84% id in 565 aa, and to Bifidobacterium longum hypothetical protein bl1400 SWALL:Q8G4I2 (EMBL:AE014770) (701 aa) fasta scores: E(): 5.8e-31, 28.45% id in 594 aa
YP_051748.1	Similar to Salmonella typhi hypothetical protein Sty4439 SWALL:Q8Z1T1 (EMBL:AL627282) (332 aa) fasta scores: E(): 1.2e-105, 79.26% id in 328 aa, and to Escherichia coli O6 hypothetical protein yjbn or c5018 SWALL:AAN83444 (EMBL:AE016770) (331 aa) fasta scores: E(): 3.8e-105, 82.22% id in 315 aa
YP_051749.1	coordinately regulated along with pspA; PspF-dependent induction in response to secretin overexpression in Yersinia
YP_051750.1	Similar to Bacillus halodurans cytochrome P450 hydroxylase bh0579 SWALL:Q9KFA6 (EMBL:AP001509) (453 aa) fasta scores: E(): 2.2e-24, 26.19% id in 462 aa, and to Vicia sativa cytochrome P450 94a1 cyp94a1 or vagh111 SWALL:C941_VICSA (SWALL:O81117) (514 aa) fasta scores: E(): 2.2e-23, 25.88% id in 483 aa
YP_051751.1	Similar to Escherichia coli quinone oxidoreductase Qor or Hcz or b4051 SWALL:QOR_ECOLI (SWALL:P28304) (327 aa) fasta scores: E(): 3.6e-91, 75.22% id in 327 aa
YP_051752.1	unwinds double stranded DNA
YP_051753.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_051755.1	Similar to Xylella fastidiosa hypothetical protein Xf0898 xf0898 SWALL:Q9PEY0 (EMBL:AE003929) (117 aa) fasta scores: E(): 2.8e-07, 38.46% id in 91 aa, and to Pectobacterium carotovorum subsp. carotovorum outer membrane lipoprotein Pcp SWALL:Q9RB08 (EMBL:AF168687) (155 aa) fasta scores: E(): 1.8, 29.78% id in 94 aa
YP_051756.1	Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr0340 SWALL:BAC45605 (EMBL:AP005936) (167 aa) fasta scores: E(): 1.4e-26, 52.02% id in 148 aa, and to Rhizobium meliloti  transcription regulator protein r02941 or smc03210 SWALL:Q92LT2 (EMBL:AL591792) (159 aa) fasta scores: E(): 1.6e-20, 45.16% id in 155 aa
YP_051757.1	Similar to Brucella melitensis hypothetical membrane spanning protein Bmei1312 SWALL:Q8YG50 (EMBL:AE009569) (217 aa) fasta scores: E(): 6.6e-41, 52.21% id in 203 aa, and to Vibrio vulnificus uncharacterized conserved protein vv21211 SWALL:AAO08108 (EMBL:AE016812) (202 aa) fasta scores: E(): 2.5e-37, 54.92% id in 193 aa
YP_051758.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_051759.1	Similar to Pseudomonas putida conserved hypothetical protein pp4958 SWALL:AAN70525 (EMBL:AE016792) (179 aa) fasta scores: E(): 4.7e-39, 59.25% id in 162 aa, and to Escherichia coli hypothetical protein ygjp or b3085 SWALL:YGJP_ECOLI (SWALL:P42597) (179 aa) fasta scores: E(): 2.5e-38, 61.14% id in 157 aa
YP_051760.1	Similar to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 1.4e-29, 51.28% id in 156 aa, and to Yersinia pestis  membrane protein ypo2793 or y1136 SWALL:AAM84714 (EMBL:AJ414153) (190 aa) fasta scores: E(): 3.7e-51, 79.48% id in 156 aa
YP_051761.1	Similar to Yersinia pestis  membrane protein ypo2790 SWALL:Q8ZD08 (EMBL:AJ414153) (133 aa) fasta scores: E(): 3.7e-26, 68.62% id in 102 aa
YP_051762.1	Similar to Yersinia pestis  membrane protein ypo2790 SWALL:Q8ZD08 (EMBL:AJ414153) (133 aa) fasta scores: E(): 5e-30, 57.57% id in 132 aa
YP_051763.1	Similar to Yersinia pestis hypothetical protein ypo2788 or y1139 SWALL:Q8ZD09 (EMBL:AJ414153) (193 aa) fasta scores: E(): 5.5e-56, 73.95% id in 192 aa
YP_051764.1	Similar to Vibrio metschnikovii Orfc273-4 orfc273-4 SWALL:Q8GNE0 (EMBL:AF530480) (111 aa) fasta scores: E(): 1.9e-14, 51.37% id in 109 aa
YP_051765.1	Similar to Vibrio metschnikovii Orfc273-4 orfc273-4 SWALL:AAN33037 (EMBL:AF530480) (111 aa) fasta scores: E(): 1.2e-07, 51.42% id in 70 aa
YP_051767.1	Similar to Yersinia pestis hypothetical protein Ypo2468 SWALL:Q8ZDT8 (EMBL:AJ414152) (328 aa) fasta scores: E(): 8.6e-104, 76.38% id in 326 aa, and to Pasteurella multocida hypothetical protein Pm0311 SWALL:Q9CNW2 (EMBL:AE006067) (326 aa) fasta scores: E(): 1.4e-73, 59.93% id in 312 aa
YP_051768.1	Similar to Yersinia pestis hypothetical protein ypo2467 or y1723 SWALL:Q8ZDT9 (EMBL:AJ414152) (1095 aa) fasta scores: E(): 0, 59.17% id in 1112 aa, and to Pasteurella multocida hypothetical protein Pm0312 SWALL:Q9CNW1 (EMBL:AE006067) (1106 aa) fasta scores: E(): 2.7e-158, 40.62% id in 1125 aa
YP_051769.1	Similar to Yersinia pestis hypothetical protein ypo2465 or y1724 SWALL:Q8ZDU1 (EMBL:AJ414152) (448 aa) fasta scores: E(): 1.1e-79, 51.14% id in 438 aa, and to Pasteurella multocida hypothetical protein Pm0305 SWALL:Q9CNW8 (EMBL:AE006066) (444 aa) fasta scores: E(): 2.2e-20, 28.25% id in 446 aa
YP_051770.1	Similar to Yersinia pestis hypothetical protein ypo2464 or y1725 SWALL:Q8ZDU2 (EMBL:AJ414152) (316 aa) fasta scores: E(): 3.2e-72, 62.91% id in 302 aa, and to Pasteurella multocida hypothetical protein Pm0306 SWALL:Q9CNW7 (EMBL:AE006066) (327 aa) fasta scores: E(): 7.8e-11, 32.4% id in 324 aa
YP_051771.1	Similar to Yersinia pestis hypothetical protein ypo2463 or y1726 SWALL:Q8ZDU3 (EMBL:AJ414152) (334 aa) fasta scores: E(): 2.1e-96, 74.63% id in 339 aa, and to Pasteurella multocida hypothetical protein Pm0307 SWALL:Q9CNW6 (EMBL:AE006066) (335 aa) fasta scores: E(): 9.6e-63, 53.73% id in 335 aa
YP_051772.1	Similar to Yersinia pestis hypothetical protein ypo2462 or y1727 SWALL:Q8ZDU4 (EMBL:AJ414152) (184 aa) fasta scores: E(): 4.7e-43, 60.32% id in 184 aa, and to Pasteurella multocida hypothetical protein Pm0308 SWALL:Q9CNW5 (EMBL:AE006066) (186 aa) fasta scores: E(): 1.8e-11, 29.94% id in 187 aa
YP_051773.1	Similar to Vibrio metschnikovii Orfc273-4 orfc273-4 SWALL:AAN33037 (EMBL:AF530480) (111 aa) fasta scores: E(): 0.039, 49.02% id in 51 aa, and to Escherichia coli O6 hypothetical protein c1020 SWALL:AAN79492 (EMBL:AE016758) (130 aa) fasta scores: E(): 0.34, 36.61% id in 71 aa
YP_051774.1	Similar to Salmonella typhimurium McK protein SWALL:Q8L237 (EMBL:AP005147) (138 aa) fasta scores: E(): 1.3e-40, 76.81% id in 138 aa, and to Salmonella typhimurium  nucleic acid-binding protein, contains pin domain stm3033 SWALL:Q8ZM86 (EMBL:AE008839) (132 aa) fasta scores: E(): 2.6e-16, 42.42% id in 132 aa
YP_051775.1	Similar to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 3.8e-22, 77.63% id in 76 aa, and to Salmonella typhimurium Kor protein Kor SWALL:Q8L236 (EMBL:AP005147) (76 aa) fasta scores: E(): 6.3e-22, 76.31% id in 76 aa.
YP_051776.1	Similar to Vibrio cholerae hypothetical protein Vc0373 SWALL:Q9KUY5 (EMBL:AE004125) (139 aa) fasta scores: E(): 4e-37, 64.02% id in 139 aa, and to Pseudomonas stutzeri pa5286-like protein SWALL:Q8RPA9 (EMBL:AF414717) (141 aa) fasta scores: E(): 2.1e-34, 60.87% id in 138 aa
YP_051777.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_051778.1	binds to single stranded DNA and PriA helcase facilitate replication restart
YP_051779.1	Similar to Ralstonia solanacearum probable signal peptide protein rsp1459 or rs03085 SWALL:Q8XQ27 (EMBL:AL646085) (574 aa) fasta scores: E(): 3.5e-102, 49% id in 553 aa, and to Brucella suis conserved hypothetical protein bra1172 SWALL:Q8FUP8 (EMBL:AE014610) (560 aa) fasta scores: E(): 2.4e-79, 42.98% id in 549 aa
YP_051780.1	Similar to Pseudomonas aeruginosa probable acetyltransferase pa4166 SWALL:Q9HWL5 (EMBL:AE004833) (152 aa) fasta scores: E(): 3.5e-38, 58.62% id in 145 aa, and to Acinetobacter sp. ADP1 hypothetical 18.3 kDa protein SWALL:O24837 (EMBL:AF009672) (155 aa) fasta scores: E(): 3.5e-32, 53.79% id in 145 aa
YP_051781.1	Similar to Escherichia coli O157:H7 hypothetical protein z3974 or ecs3535 SWALL:Q8X921 (EMBL:AE005496) (143 aa) fasta scores: E(): 3.2e-34, 62.67% id in 142 aa, and to Salmonella typhimurium  cytoplasmic protein stm2804 SWALL:Q8ZML2 (EMBL:AE008828) (143 aa) fasta scores: E(): 1e-31, 61.26% id in 142 aa
YP_051782.1	Similar to the C-terminal regions of Escherichia coli PhnO protein or b4093 SWALL:PHNO_ECOLI (SWALL:P16691) (144 aa) fasta scores: E(): 1.7, 37.2% id in 43 aa, and to Streptomyces griseus regulatory protein for c-p lyase PhnO-likE SWALL:Q54244 (EMBL:D29961) (150 aa) fasta scores: E(): 0.29, 35.71% id in 42 aa
YP_051783.1	Similar to Bacteriophage Mu positive regulator of late transcription C SWALL:VPC_BPMU (SWALL:P06022) (140 aa) fasta scores: E(): 0.00077, 32.14% id in 112 aa and to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 1.8e-22, 60.19% id in 103 aa, and to Salmonella typhi bacteriophage transcriptional regulator sty1591 SWALL:Q8Z6X3 (EMBL:AL627270) (129 aa) fasta scores: E(): 5.5e-35, 67.44% id in 129 aa. Also similar to ECA2437 (59.259% id. in 108 aa overlap)
YP_051784.1	Similar to Bacteriophage Mu protein gemA SWALL:VG16_BPMU (SWALL:Q38494) (183 aa) fasta scores: E(): 1.3e-16, 43.66% id in 142 aa, and to Salmonella typhi hypothetical protein Sty1592 sty1592 SWALL:Q8Z6X2 (EMBL:AL627270) (150 aa) fasta scores: E(): 2.8e-32, 64.44% id in 135 aa
YP_051785.1	Similar to Yersinia pestis hypothetical y1850 SWALL:AAM85417 (EMBL:AE013788) (64 aa) fasta scores: E(): 4.8e-13, 58.06% id in 62 aa
YP_051786.1	Similar to Escherichia coli O157:H7 hypothetical protein Ecs4949 ecs4949 SWALL:Q8X340 (EMBL:AP002567) (93 aa) fasta scores: E(): 4.7e-05, 39.02% id in 82 aa
YP_051787.1	Similar to Salmonella typhi hypothetical protein Sty1598 SWALL:Q8Z6W6 (EMBL:AL627270) (100 aa) fasta scores: E(): 8.5e-17, 58.16% id in 98 aa, and to Neisseria meningitidis phosphoribosyl-ATP pyrophosphatase HisE or nma0807 SWALL:HIS2_NEIMA (SWALL:Q9JVJ9) (107 aa) fasta scores: E(): 6.2, 35.71% id in 84 aa
YP_051788.1	Similar to Neisseria meningitidis hypothetical protein nma1871 or rth11 SWALL:Q9JRE4 (EMBL:AL162757) (203 aa) fasta scores: E(): 7e-29, 41% id in 200 aa, and to Shewanella oneidensis conserved hypothetical protein so0648 SWALL:AAN53726 (EMBL:AE015511) (208 aa) fasta scores: E(): 1.5e-21, 33.84% id in 195 aa
YP_051789.1	Similar to Salmonella typhi hypothetical protein Sty1602 SWALL:Q8Z6W3 (EMBL:AL627270) (89 aa) fasta scores: E(): 4.7e-16, 46.59% id in 88 aa
YP_051791.1	Similar to Salmonella typhi Eha SWALL:O87649 (EMBL:AF091717) (322 aa) fasta scores: E(): 1.5e-63, 86.9% id in 229 aa, and to Vibrio cholerae Eha protein vc1798 SWALL:Q9KR48 (EMBL:AE004256) (383 aa) fasta scores: E(): 6.4e-25, 40.15% id in 386 aa
YP_051792.1	Similar to Salmonella typhi hypothetical protein Sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta scores: E(): 4.3e-189, 82% id in 589 aa, and to Vibrio cholerae hypothetical protein Vc1799 SWALL:Q9KR47 (EMBL:AE004256) (585 aa) fasta scores: E(): 1.4e-49, 33.63% id in 559 aa
YP_051793.1	Similar to Salmonella typhi hypothetical protein Sty1606 SWALL:Q8Z6W0 (EMBL:AL627270) (143 aa) fasta scores: E(): 4.2e-32, 70.62% id in 143 aa, and to Neisseria meningitidis hypothetical protein Nmb1002 SWALL:Q9JZL4 (EMBL:AE002451) (291 aa) fasta scores: E(): 2.2e-23, 34.83% id in 267 aa
YP_051794.1	Similar to Neisseria meningitidis hypothetical protein Nma1223 SWALL:Q9JUN2 (EMBL:AL162755) (96 aa) fasta scores: E(): 2.4e-06, 37.64% id in 85 aa, and to Brucella melitensis transcriptional regulator, IclR family bmei1717 SWALL:Q8YF10 (EMBL:AE009605) (264 aa) fasta scores: E(): 0.013, 33.76% id in 77 aa
YP_051795.1	Similar to Neisseria meningitidis hypothetical protein Nmb1004 SWALL:Q9JZL2 (EMBL:AE002451) (81 aa) fasta scores: E(): 5.8e-07, 48.21% id in 56 aa, and to Xanthomonas campestris hypothetical protein Xcc2998 SWALL:Q8P6H1 (EMBL:AE012413) (84 aa) fasta scores: E(): 0.01, 36.06% id in 61 aa
YP_051796.1	Similar to Ralstonia solanacearum  DNA-binding repressor transcription regulator protein rsc1907 or rs03481 SWALL:Q8XY56 (EMBL:AL646067) (173 aa) fasta scores: E(): 3.9e-09, 50.6% id in 83 aa
YP_051799.1	Similar to many proteins described as nucleoid-associated proteins e.g. Escherichia coli nucleoid-associated protein NdpA or b2186 SWALL:NDPA_ECOLI (SWALL:P33920) (334 aa) fasta scores: E(): 1.7e-18, 28.22% id in 333 aa. Also similar to many others e.g. Ralstonia oxalatica hypothetical protein SWALL:CAD61113 (EMBL:AJ536756) (340 aa) fasta scores: E(): 8.2e-41, 38.34% id in 326 aa; Similar to , and to Pseudomonas resinovorans hypothetical protein or93 SWALL:BAC41613 (EMBL:AB088420) (333 aa) fasta scores: E(): 1.9e-30, 30.12% id in 332 aa
YP_051800.1	Similar to Ralstonia oxalatica hypothetical protein SWALL:CAD61111 (EMBL:AJ536756) (391 aa) fasta scores: E(): 1.4e-33, 33.43% id in 332 aa
YP_051801.1	Similar to Salmonella typhi hypothetical protein Sty1608 SWALL:Q8Z6V8 (EMBL:AL627270) (116 aa) fasta scores: E(): 3.5e-27, 76.47% id in 102 aa, and to Salmonella typhimurium  inner membrane protein stm4218 SWALL:Q8ZKI7 (EMBL:AE008897) (95 aa) fasta scores: E(): 1.2e-08, 52.94% id in 102 aa
YP_051802.1	Similar to Salmonella typhimurium  soluble lytic murein transglycosylase stm4217 SWALL:Q8ZKI8 (EMBL:AE008897) (201 aa) fasta scores: E(): 1.9e-52, 67.56% id in 185 aa
YP_051803.1	Similar to Salmonella typhi  lipoprotein sty1611 SWALL:Q8Z6V5 (EMBL:AL627270) (216 aa) fasta scores: E(): 3.2e-20, 42.98% id in 228 aa
YP_051804.1	Similar to Salmonella typhimurium  inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 2.8e-25, 70.29% id in 101 aa, and to Salmonella typhi  membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 8.4e-22, 61.11% id in 108 aa
YP_051805.1	Similar to Salmonella typhi hypothetical protein Sty1613 SWALL:Q8Z6V3 (EMBL:AL627270) (103 aa) fasta scores: E(): 3.7e-38, 93.2% id in 103 aa
YP_051806.1	Similar to Bacteriophage Mu protein gp27 SWALL:VG27_BPMU (SWALL:Q9T1W7) (191 aa) fasta scores: E(): 0.0026, 22.87% id in 188 aa. Also similar to Salmonella typhi prophage-related protein Sty1614 SWALL:Q8Z6V2 (EMBL:AL627270) (181 aa) fasta scores: E(): 5.4e-54, 91.16% id in 181 aa
YP_051807.1	Similar to Bacteriophage Mu protein gp28 28 SWALL:VG28_BPMU (SWALL:Q9T1W6) (551 aa) fasta scores: E(): 9.8e-83, 47.23% id in 470 aa and Salmonella typhi hypothetical prophage related protein sty1615 SWALL:Q8Z6V1 (EMBL:AL627270) (531 aa) fasta scores: E(): 3.6e-189, 89.08% id in 513 aa
YP_051808.1	Similar to Bacteriophage Mu protein gp29 29 SWALL:VG29_BPMU (SWALL:Q9T1W5) (512 aa) fasta scores: E(): 1.2e-15, 26.52% id in 524 aa and to Salmonella typhi prophage related-protein Sty1616 SWALL:Q8Z6V0 (EMBL:AL627270) (498 aa) fasta scores: E(): 9.4e-146, 72.9% id in 502 aa
YP_051809.1	Similar to Bacteriophage Mu F protein or Gp30 SWALL:VPF_BPMU (SWALL:Q01259) (439 aa) fasta scores: E(): 1e-43, 44.65% id in 262 aa and Salmonella typhi hypothetical protein Sty1617 SWALL:Q8Z6U9 (EMBL:AL627270) (273 aa) fasta scores: E(): 9.7e-98, 80.44% id in 271 aa
YP_051810.1	Similar to Bacteriophage Mu g protein g or 31 SWALL:VPG_BPMU (SWALL:Q01261) (156 aa) fasta scores: E(): 0.003, 31.09% id in 164 aa and to Salmonella typhi bacteriophage protein sty1618 SWALL:Q8Z6U8 (EMBL:AL627270) (152 aa) fasta scores: E(): 1.2e-35, 71.23% id in 146 aa
YP_051811.1	Similar to Salmonella typhi hypothetical protein Sty1619 SWALL:Q8Z6U7 (EMBL:AL627270) (371 aa) fasta scores: E(): 9.8e-89, 64.67% id in 368 aa
YP_051812.1	Similar to Salmonella typhi hypothetical protein Sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.3e-89, 75.07% id in 317 aa
YP_051813.1	Similar to Salmonella typhi  membrane protein sty1621 SWALL:Q8Z6U5 (EMBL:AL627270) (112 aa) fasta scores: E(): 2.5e-24, 75% id in 112 aa
YP_051814.1	Similar to Bacteriophage Mu protein Gp36 SWALL:VG36_BPMU (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.0025, 26.02% id in 146 aa and to Salmonella typhi phage-related protein Sty1622 SWALL:Q8Z6U4 (EMBL:AL627270) (148 aa) fasta scores: E(): 4.4e-43, 75.67% id in 148 aa
YP_051815.1	Similar to Salmonella typhi hypothetical protein Sty1623 SWALL:Q8Z6U3 (EMBL:AL627270) (154 aa) fasta scores: E(): 4.2e-46, 71.42% id in 154 aa, and to Salmonella typhimurium  cytoplasmic protein stm4215 SWALL:Q8ZKJ0 (EMBL:AE008897) (151 aa) fasta scores: E(): 8e-13, 32.9% id in 155 aa
YP_051816.1	Similar to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 1.7e-13, 56.79% id in 81 aa, and to Salmonella typhimurium  cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 3.9e-09, 65.21% id in 46 aa
YP_051817.1	Similar to Bacteriophage P2 major tail sheath protein fI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 2.4e-19, 30.27% id in 403 aa and to Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 3.5e-154, 81.05% id in 475 aa
YP_051818.1	Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 4e-09, 28.65% id in 164 aa and to Erwinia carotovora tail core protein SWALL:Q9WXA0 (EMBL:AB017338) (174 aa) fasta scores: E(): 2.2e-60, 82.75% id in 174 aa
YP_051819.1	Similar to Bacteriophage N15 gp56 gene 56 SWALL:O64364 (EMBL:AF064539) (67 aa) fasta scores: E(): 2.6e-10, 61.29% id in 62 aa
YP_051820.1	Similar to Salmonella typhi hypothetical protein t1360 SWALL:AAO69005 (EMBL:AE016838) (111 aa) fasta scores: E(): 1.7e-20, 62.5% id in 96 aa, and to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW60 (EMBL:AB045036) (106 aa) fasta scores: E(): 4.7e-17, 53.12% id in 96 aa
YP_051821.1	Similar to Salmonella typhi  bacteriophage protein sty1629 SWALL:Q8Z6T7 (EMBL:AL627270) (821 aa) fasta scores: E(): 1.4e-195, 66.22% id in 823 aa, and to Pectobacterium carotovorum subsp. carotovorum tail protein SWALL:Q9KW59 (EMBL:AB045036) (835 aa) fasta scores: E(): 3.9e-67, 32.94% id in 853 aa
YP_051822.1	Similar to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW58 (EMBL:AB045036) (309 aa) fasta scores: E(): 1.8e-50, 53.79% id in 303 aa, and to Salmonella typhi hypothetical protein Sty1630 SWALL:Q8Z6T6 (EMBL:AL627270) (294 aa) fasta scores: E(): 1.1e-68, 65.41% id in 292 aa
YP_051823.1	Similar to Bacteriophage P2 tail protein x X SWALL:VPX_BPP2 (SWALL:P51772) (67 aa) fasta scores: E(): 2.1, 32.78% id in 61 aa and to Salmonella typhi bacteriophage tail fibre protein sty1631 SWALL:Q8Z6T5 (EMBL:AL627270) (71 aa) fasta scores: E(): 1.5e-19, 63.38% id in 71 aa
YP_051824.1	Similar to Bacteriophage P2 GpD SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 7.1e-11, 24.45% id in 364 aa and to Salmonella typhi  protein sty1632 SWALL:Q8Z6T4 (EMBL:AL627270) (384 aa) fasta scores: E(): 4.1e-106, 76.44% id in 382 aa
YP_051825.1	Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 3.6e-07, 28.27% id in 191 aa and Pectobacterium carotovorum subsp. carotovorum tail spike SWALL:Q9KW56 (EMBL:AB045036) (193 aa) fasta scores: E(): 5.4e-47, 64.46% id in 197 aa
YP_051827.1	Similar to Bacteriophage P2 baseplate assembly protein w W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 0.0098, 36.78% id in 87 aa and Erwinia carotovora, and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9WXA2 (EMBL:AB017338) (115 aa) fasta scores: E(): 7.1e-37, 75.65% id in 115 aa
YP_051828.1	Similar to Bacteriophage P2 baseplate assembly protein J SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 3.7e-13, 36.89% id in 187 aa and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9KW55 (EMBL:AB045036) (367 aa) fasta scores: E(): 7.3e-87, 65.39% id in 367 aa
YP_051829.1	Similar to the N-terminus of Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 5.5, 29.29% id in 99 aa. Also hhighly similar to Erwinia carotovora tail fiber SWALL:Q9WXA4 (EMBL:AB017338) (182 aa) fasta scores: E(): 3.8e-31, 59.15% id in 142 aa
YP_051830.1	Similar to Pectobacterium carotovorum subsp. carotovorum tail fiber SWALL:Q9KW53 (EMBL:AB045036) (632 aa) fasta scores: E(): 4.4e-66, 75.76% id in 260 aa, and to Salmonella typhi bacteriophage tail fiber protein sty1637 SWALL:Q8Z6S9 (EMBL:AL627270) (341 aa) fasta scores: E(): 2.1e-29, 35.8% id in 539 aa, and to Bacteriophage HK97 tail fiber stF SWALL:Q9MCR6 (EMBL:AF069529) (321 aa) fasta scores: E(): 3.1e-27, 39.74% id in 317 aa
YP_051831.1	Similar to Salmonella typhi  bacteriophage tail fiber assembly protein sty1639 SWALL:Q8Z6S7 (EMBL:AL627270) (205 aa) fasta scores: E(): 1.1e-18, 38.57% id in 197 aa, and to Bacteriophage HK97 gp29 tfA SWALL:Q9MCR5 (EMBL:AF069529) (202 aa) fasta scores: E(): 8.2e-20, 38.88% id in 198 aa
YP_051832.1	Similar to Bacillus halodurans hypothetical protein Bh1582 bh1582 SWALL:Q9KCI9 (EMBL:AP001512) (143 aa) fasta scores: E(): 7.2e-05, 32.97% id in 94 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob0311 SWALL:BAC12267 (EMBL:AP004594) (140 aa) fasta scores: E(): 0.00065, 27.95% id in 93 aa
YP_051833.1	Similar to Escherichia coli O157:H7 z3973 protein z3973 or ecs3534 SWALL:Q8X922 (EMBL:AE005496) (444 aa) fasta scores: E(): 1.8e-78, 47.91% id in 455 aa, and to Salmonella typhimurium  regulatory protein, GntR family stm2803 SWALL:Q8ZML3 (EMBL:AE008828) (444 aa) fasta scores: E(): 5.4e-76, 47.91% id in 455 aa
YP_051834.1	Similar to Agrobacterium tumefaciens transcriptional regulator, LacI family PurR or atu4556 or agr_l_625 SWALL:Q8U798 (EMBL:AE009383) (353 aa) fasta scores: E(): 2.3e-43, 39.23% id in 339 aa, and to Sphingomonas sp transcriptional regulator CcpA SWALL:Q9KWU0 (EMBL:AB011415) (353 aa) fasta scores: E(): 5.6e-26, 32.75% id in 345 aa
YP_051835.1	Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4557 or agr_l_624 SWALL:Q8U797 (EMBL:AE009383) (349 aa) fasta scores: E(): 2.9e-96, 69.42% id in 350 aa, and to Thermoanaerobacter tengcongensis sugar permeases malg4 or tte1936 SWALL:Q8R8Q9 (EMBL:AE013144) (275 aa) fasta scores: E(): 1.5e-45, 39.93% id in 328 aa
YP_051836.1	Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4558 or agr_l_623 SWALL:Q8U796 (EMBL:AE009384) (352 aa) fasta scores: E(): 6.2e-82, 63.09% id in 317 aa, and to Thermoanaerobacter tengcongensis ABC-type sugar transport systems, permease components malf4 or tte1937 SWALL:Q8R8Q8 (EMBL:AE013144) (294 aa) fasta scores: E(): 5e-30, 37.62% id in 295 aa
YP_051837.1	Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu4559 or agr_l_621 SWALL:Q8U795 (EMBL:AE009384) (368 aa) fasta scores: E(): 1e-75, 60.05% id in 363 aa, and to Rhizobium meliloti  ATP-binding ABC transporter protein r00112 or smc04140 SWALL:Q92T68 (EMBL:AL591782) (360 aa) fasta scores: E(): 1.3e-69, 59.15% id in 355 aa
YP_051838.1	Similar to Erwinia chrysanthemi RhiN protein RhiN SWALL:CAC83616 (EMBL:AJ292045) (379 aa) fasta scores: E(): 1.8e-53, 45.01% id in 311 aa, and to Agrobacterium tumefaciens hypothetical protein atu4561 atu4561 or agr_l_618 SWALL:Q8U793 (EMBL:AE009384) (397 aa) fasta scores: E(): 4.9e-74, 53.46% id in 361 aa. Also similar to ECA3559 (RhiN) (43.810% id. in 315 aa overlap)
YP_051839.1	Similar to Agrobacterium tumefaciens hypothetical protein atu4562 or agr_l_617 SWALL:Q8U792 (EMBL:AE009384) (840 aa) fasta scores: E(): 4e-114, 38.74% id in 826 aa
YP_051840.1	Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4564 or agr_l_615 SWALL:Q8U790 (EMBL:AE009384) (428 aa) fasta scores: E(): 2.3e-71, 45.07% id in 426 aa, and to Thermoanaerobacter tengcongensis sugar-binding periplasmic proteins/domains ugpb4 or tte1938 SWALL:Q8R8Q7 (EMBL:AE013144) (438 aa) fasta scores: E(): 7.8e-17, 24.81% id in 403 aa
YP_051841.1	Similar to the C-terminal regions of several including Vibrio cholerae hypothetical protein Vc0614 vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 8.8e-12, 31.97% id in 147 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 9.7e-09, 27.66% id in 141 aa
YP_051842.1	Similar to Vibrio cholerae hypothetical protein Vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 2.6e-27, 40.66% id in 300 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 7.6e-29, 40.66% id in 300 aa
YP_051843.1	Similar to Rhizobium meliloti hypothetical protein rb0152 rb0152 or smb20152 SWALL:Q92X10 (EMBL:AL603642) (572 aa) fasta scores: E(): 9.3e-70, 36.77% id in 552 aa, and to Agrobacterium tumefaciens hypothetical protein atu4354 atu4354 or agr_l_1025 SWALL:Q8U7U5 (EMBL:AE009364) (557 aa) fasta scores: E(): 1.9e-63, 36.85% id in 521 aa
YP_051845.1	Similar to Escherichia coli  ABC transporter ATP-binding protein SWALL:CAD33755 (EMBL:AJ488511) (244 aa) fasta scores: E(): 1.5e-51, 65.65% id in 230 aa, and to Rhizobium loti ABC transporter, ATP-binding protein mll8315 SWALL:Q983I5 (EMBL:AP003013) (272 aa) fasta scores: E(): 8.5e-29, 45.87% id in 218 aa
YP_051846.1	Similar to Escherichia coli  ABC transporter membrane protein SWALL:CAD33756 (EMBL:AJ488511) (284 aa) fasta scores: E(): 2e-79, 80.35% id in 280 aa, and to Neisseria meningitidis  ABC-transporter membrane protein nma0790 SWALL:Q9JVL3 (EMBL:AL162754) (291 aa) fasta scores: E(): 2.8e-54, 57.14% id in 280 aa
YP_051847.1	Similar to Escherichia coli  periplasmic solute binding protein SWALL:CAD33757 (EMBL:AJ488511) (292 aa) fasta scores: E(): 1.2e-83, 78.42% id in 292 aa, and to Bradyrhizobium japonicum ABC transporter substrate-binding protein bll7769 SWALL:BAC53034 (EMBL:AP005963) (290 aa) fasta scores: E(): 1.7e-49, 48.09% id in 289 aa
YP_051848.1	Similar to Salmonella typhimurium, and Salmonella typhi  transcriptional regulator stm0164 or sty0186 SWALL:Q8XG73 (EMBL:AE008701) (255 aa) fasta scores: E(): 6.1e-68, 72.61% id in 252 aa, and to Escherichia coli O6 transcriptional regulator c0765 SWALL:AAN79238 (EMBL:AE016757) (253 aa) fasta scores: E(): 4.6e-67, 73.96% id in 242 aa
YP_051849.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_051850.1	Similar to Salmonella typhi hypothetical protein ygbk or sty0184 SWALL:Q8Z9E4 (EMBL:AL627265) (423 aa) fasta scores: E(): 3e-41, 43.59% id in 429 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1012 SWALL:BAC12968 (EMBL:AP004596) (431 aa) fasta scores: E(): 6.7e-31, 30.64% id in 434 aa
YP_051851.1	Similar to Escherichia coli O6  alcohol dehydrogenase c0762 SWALL:Q8FJW8 (EMBL:AE016757) (385 aa) fasta scores: E(): 1.1e-83, 61.96% id in 376 aa, and to Agrobacterium tumefaciens AttL SWALL:Q8VPD6 (EMBL:AY052389) (399 aa) fasta scores: E(): 4.6e-36, 35.84% id in 371 aa
YP_051852.1	Similar to Bacillus subtilis dihydrodipicolinate synthase DapA SWALL:DAPA_BACSU (SWALL:Q04796) (290 aa) fasta scores: E(): 2.9e-26, 34.16% id in 281 aa, and to Escherichia coli O6  dihydrodipicolinate synthase c0761 SWALL:AAN79234 (EMBL:AE016757) (295 aa) fasta scores: E(): 1.9e-75, 67.91% id in 293 aa
YP_051853.1	Similar to Pseudomonas aeruginosa probable sodium:solute symporter pa0287 SWALL:Q9I6K3 (EMBL:AE004466) (461 aa) fasta scores: E(): 4.1e-21, 23.02% id in 456 aa, and to Vibrio vulnificus na+/proline symporter vv20592 SWALL:AAO07538 (EMBL:AE016810) (492 aa) fasta scores: E(): 8.5e-19, 25.05% id in 455 aa
YP_051854.1	Similar to Escherichia coli O6 hypothetical protein c0759 SWALL:AAN79232 (EMBL:AE016757) (389 aa) fasta scores: E(): 1.2e-112, 70.18% id in 389 aa, and to Agrobacterium tumefaciens hypothetical protein atu5072 or agr_pat_102 SWALL:Q8UKM8 (EMBL:AE008932) (397 aa) fasta scores: E(): 2.4e-68, 47.13% id in 401 aa
YP_051855.1	Similar to Escherichia coli O6 hypothetical protein c0758 SWALL:AAN79231 (EMBL:AE016757) (156 aa) fasta scores: E(): 1.5e-22, 46.45% id in 155 aa, and to Salmonella typhi hypothetical protein Sty4806 SWALL:Q8Z124 (EMBL:AL627283) (150 aa) fasta scores: E(): 7.2e-13, 37.5% id in 152 aa
YP_051856.1	Similar to Pseudomonas aeruginosa probable short-chain dehydrogenase pa4162 SWALL:Q9HWL9 (EMBL:AE004832) (238 aa) fasta scores: E(): 8.7e-18, 39.58% id in 240 aa, and to Bradyrhizobium japonicum Blr3403 protein blr3403 SWALL:BAC48668 (EMBL:AP005947) (242 aa) fasta scores: E(): 4.5e-18, 35.19% id in 233 aa
YP_051857.1	Similar to Escherichia coli  formate acetyltransferase 3 ybiw or b0823 SWALL:PFLF_ECOLI (SWALL:P75793) (810 aa) fasta scores: E(): 7.5e-46, 30.83% id in 814 aa, and to Escherichia coli hypothetical protein SWALL:CAD42073 (EMBL:AJ494981) (1140 aa) fasta scores: E(): 0, 86.97% id in 791 aa
YP_051858.1	Similar to Escherichia coli  pyruvate formate-lyase 3 activating enzyme ybiy or b0824 SWALL:PFLE_ECOLI (SWALL:P75794) (308 aa) fasta scores: E(): 8.9e-28, 34.65% id in 303 aa, and to Escherichia coli hypothetical protein SWALL:CAD42072 (EMBL:AJ494981) (315 aa) fasta scores: E(): 2.3e-84, 69.62% id in 316 aa
YP_051859.1	Similar to Escherichia coli quaternary ammonium compound resistance protein QacH SWALL:Q9F0S6 (EMBL:AF205943) (110 aa) fasta scores: E(): 3.8e-13, 41.28% id in 109 aa
YP_051860.1	Similar to Escherichia coli EmrE protein EmrE or MvrC or Eb or b0543 SWALL:EMRE_ECOLI (SWALL:P23895) (110 aa) fasta scores: E(): 3e-13, 37.5% id in 104 aa, and to Escherichia coli hypothetical protein SWALL:CAD42067 (EMBL:AJ494981) (109 aa) fasta scores: E(): 7.6e-33, 75.22% id in 109 aa
YP_051861.1	Similar to Yersinia pestis LacI-family transcriptional regulatory protein ypo2568 SWALL:Q8ZDJ4 (EMBL:AJ414152) (344 aa) fasta scores: E(): 4.7e-70, 54.46% id in 336 aa, and to Escherichia coli O6  conserved protein c0337 SWALL:AAN78825 (EMBL:AE016756) (343 aa) fasta scores: E(): 1.6e-67, 56.45% id in 310 aa
YP_051862.1	Similar to Escherichia coli  phosphotransferase enzyme iII, A component SgcA or b4302 SWALL:SGCA_ECOLI (SWALL:P39363) (143 aa) fasta scores: E(): 9.4e-18, 40% id in 135 aa, and to Yersinia pestis phosphotransferase enzyme ii, a component ypo2569 or y1618 SWALL:Q8ZDJ3 (EMBL:AJ414152) (147 aa) fasta scores: E(): 1.3e-39, 71.42% id in 147 aa
YP_051863.1	Similar to Escherichia coli O6 hypothetical protein c0335 SWALL:AAN78823 (EMBL:AE016756) (95 aa) fasta scores: E(): 3.1e-25, 84.21% id in 95 aa, and to Yersinia pestis hypothetical y1617 SWALL:AAM85186 (EMBL:AE013764) (70 aa) fasta scores: E(): 5.6e-15, 81.81% id in 66 aa
YP_051864.1	membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr
YP_051865.1	similar to transaldolase from Escherichia coli; many organisms have multiple copies
YP_051866.1	Similar to Salmonella typhi hypothetical upf0231 protein yacl or sty0182 or t0165 SWALL:Q8Z9E5 (EMBL:AL627265) (120 aa) fasta scores: E(): 1.2e-33, 70.94% id in 117 aa, and to Escherichia coli O6 hypothetical upf0231 protein yacl or c0148 SWALL:AAN78642 (EMBL:AE016755) (136 aa) fasta scores: E(): 3.5e-32, 70.08% id in 117 aa
YP_051867.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_051869.1	Similar to Pseudomonas aeruginosa  transcriptional activator SWALL:AAN62123 (EMBL:AF440523) (103 aa) fasta scores: E(): 2.7e-30, 74.75% id in 103 aa, and to Salmonella typhimurium  regulatory protein, ArsR family stm2797 SWALL:Q8ZML8 (EMBL:AE008827) (99 aa) fasta scores: E(): 7.5e-15, 51.57% id in 95 aa
YP_051870.1	Fep; Cbt; Cbr; FeuB; FepA; PfeA; IroN; BfeA; outer membrane receptor of ferric enterobactin and colicins B and D; interacts with the TonB-ExbBD complex which catalyzes the translocation of the siderophore to the periplasmic space
YP_051872.1	Similar to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 7.3e-15, 27.68% id in 307 aa, and to Brucella suis transcriptional regulator, AraC family bra1192 SWALL:AAN34350 (EMBL:AE014611) (259 aa) fasta scores: E(): 6.2e-14, 26.33% id in 243 aa
YP_051873.1	Similar to Agrobacterium tumefaciens hypothetical protein atu3361 or agr_l_2924 SWALL:Q8UAL2 (EMBL:AE009266) (448 aa) fasta scores: E(): 5.1e-53, 42.42% id in 462 aa, and to Bacillus subtilis hypothetical protein yxeq or lp9I SWALL:YXEQ_BACSU (SWALL:P54956) (445 aa) fasta scores: E(): 3.3e-43, 40.5% id in 400 aa
YP_051874.1	Similar to Yersinia pestis hypothetical y0507 SWALL:AAM84096 (EMBL:AE013652) (330 aa) fasta scores: E(): 1.1e-96, 71.96% id in 321 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob2095 SWALL:BAC14051 (EMBL:AP004600) (335 aa) fasta scores: E(): 1.8e-11, 26.58% id in 316 aa
YP_051875.1	Similar to Yersinia pestis hypothetical protein Ypo3693 SWALL:Q8ZAU3 (EMBL:AJ414158) (212 aa) fasta scores: E(): 4.7e-23, 35.84% id in 212 aa
YP_051876.1	E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_051877.1	E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains
YP_051878.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_051879.1	activates lctPRD operon; autoregulates itself through repression of pdhR-aceEF-lpdA operon; regulates pyruvate dehydrogenase complex
YP_051880.1	Similar to Escherichia coli aromatic amino acid transport protein AroP or b0112 SWALL:AROP_ECOLI (SWALL:P15993) (457 aa) fasta scores: E(): 5.2e-136, 76.78% id in 448 aa
YP_051881.1	Similar to Salmonella typhimurium hypothetical 52.4 kDa protein stm0149 SWALL:Q9L4I1 (EMBL:AJ242516) (468 aa) fasta scores: E(): 4.5e-155, 79.78% id in 455 aa, and to Escherichia coli hypothetical symporter yicj or b3657 SWALL:YICJ_ECOLI (SWALL:P31435) (460 aa) fasta scores: E(): 2.9e-87, 46.22% id in 450 aa
YP_051882.1	Similar to Streptomyces chartreusis alpha-L-arabinofuranosidase II precursor SWALL:ABF2_STRCX (SWALL:P82594) (328 aa) fasta scores: E(): 1e-65, 54.19% id in 286 aa, and to Salmonella typhi putatuve glycosysl hydrolase sty0170 SWALL:Q8Z9F3 (EMBL:AL627265) (316 aa) fasta scores: E(): 2.9e-102, 74.76% id in 313 aa
YP_051883.1	involved in regulation of beta-lactamase; signaling protein
YP_051884.1	Similar to Escherichia coli ampd protein AmpD or b0110 SWALL:AMPD_ECOLI (SWALL:P13016) (183 aa) fasta scores: E(): 1.2e-51, 67.21% id in 183 aa, and to Enterobacter cloacae AmpD protein AmpD SWALL:AMPD_ENTCL (SWALL:P82973) (187 aa) fasta scores: E(): 5.9e-53, 69.1% id in 178 aa
YP_051885.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri nucleoside-specific channel-forming protein Tsx precursor Tsx or NupA or b0411 or z0512 or ecs0464 or sf0348 SWALL:TSX_ECOLI (SWALL:P22786) (294 aa) fasta scores: E(): 3.1e-92, 73.46% id in 294 aa
YP_051886.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_051887.1	Similar to Escherichia coli prepilin peptidase dependent protein D precursor PpdD or b0108 SWALL:PPDD_ECOLI (SWALL:P36647) (146 aa) fasta scores: E(): 2.8e-32, 60.69% id in 145 aa
YP_051888.1	Similar to Escherichia coli protein transport protein HofB or HopB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 3.2e-77, 51.06% id in 470 aa
YP_051889.1	Similar to Escherichia coli protein transport protein HofC or HopC or b0106 SWALL:HOFC_ECOLI (SWALL:P36646) (400 aa) fasta scores: E(): 5.6e-55, 40.15% id in 401 aa
YP_051890.1	catalyzes the NADPH-dependent deamination of GMP to inosine monophosphate
YP_051891.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_051892.1	Similar to Yersinia pestis hypothetical protein ypo3431 or y0756 SWALL:AAM84343 (EMBL:AJ414157) (250 aa) fasta scores: E(): 1.2e-65, 69.2% id in 250 aa, and to Escherichia coli O6 hypothetical protein yacf or c0122 SWALL:AAN78620 (EMBL:AE016755) (247 aa) fasta scores: E(): 1.7e-63, 67.34% id in 245 aa
YP_051893.1	Similar to Yersinia pestis hypothetical protein ypo3432 or y0755 SWALL:Q8ZBH8 (EMBL:AJ414157) (68 aa) fasta scores: E(): 2.6e-16, 66.12% id in 62 aa, and to Escherichia coli O6 hypothetical protein yacg or c0121 SWALL:AAN78619 (EMBL:AE016755) (65 aa) fasta scores: E(): 2e-15, 65% id in 60 aa
YP_051894.1	Similar to Escherichia coli mutator MutT protein MutT or b0099 SWALL:MUTT_ECOLI (SWALL:P08337) (129 aa) fasta scores: E(): 6.2e-23, 55.72% id in 131 aa
YP_051895.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_051896.1	secM translational pause allows for the initiation of secA translation
YP_051897.1	Similar to Yersinia pestis hypothetical protein ypo0562 or y3619 SWALL:Q8ZIE2 (EMBL:AJ414143) (176 aa) fasta scores: E(): 4.8e-42, 67.81% id in 174 aa, and to Vibrio cholerae hypothetical protein Vc2395 SWALL:Q9KPH3 (EMBL:AE004310) (157 aa) fasta scores: E(): 3.3e-11, 33.74% id in 163 aa
YP_051898.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_051899.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_051900.1	ATP-binding involved in recruitment of FtsK to Z ring; essential cell division protein; colocalizes with FtsZ through direct interaction to the septal ring structure; structurally similar to eukaryotic actin; binds directly to the cell membrane
YP_051901.1	involved in septum formation
YP_051902.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_051903.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_051904.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_051905.1	integral membrane protein involved in stabilizing FstZ ring during cell division
YP_051906.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_051907.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_051908.1	Similar to Escherichia coli UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF or Mra or b0086 SWALL:MURF_ECOLI (SWALL:P11880) (452 aa) fasta scores: E(): 1.5e-118, 71.3% id in 453 aa
YP_051909.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_051910.1	Similar to Escherichia coli, and Escherichia coli O157:H7 peptidoglycan synthetase FtsI precursor FtsI or PbpB or b0084 or z0094 or ecs0088 SWALL:FTSI_ECOLI (SWALL:P04286) (588 aa) fasta scores: E(): 1.7e-197, 86.22% id in 588 aa
YP_051911.1	membrane bound cell division protein at septum containing leucine zipper motif
YP_051912.1	Similar to Escherichia coli, and Escherichia coli O157:H7 D-adenosyl-methyltransferase MraW mraw or b0082 or z0092 or ecs0086 SWALL:MRAW_ECOLI (SWALL:P18595) (313 aa) fasta scores: E(): 6.8e-94, 79.93% id in 314 aa
YP_051913.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_051914.1	Similar to Yersinia pestis  membrane protein ypo0544 SWALL:Q8ZIF9 (EMBL:AJ414143) (148 aa) fasta scores: E(): 5.1e-40, 72.02% id in 143 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ygaw or b2670 or c3221 or z3970 or ecs3531 or sf2698 SWALL:YGAW_ECOLI (SWALL:P76626) (149 aa) fasta scores: E(): 9.4e-34, 61.53% id in 143 aa
YP_051915.1	binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism
YP_051916.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_051917.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive
YP_051918.1	Similar to Yersinia pestis  AMP-binding enzyme-family protein ypo0537 or y3641 SWALL:Q8ZIG5 (EMBL:AJ414143) (601 aa) fasta scores: E(): 1.8e-160, 66.61% id in 599 aa, and to Vibrio vulnificus long-chain acyl-coa synthetase vv10649 SWALL:AAO09161 (EMBL:AE016799) (601 aa) fasta scores: E(): 1.8e-133, 55.31% id in 593 aa
YP_051919.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_051920.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_051921.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_051922.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_051923.1	Similar to Pseudomonas putida conserved hypothetical protein pp2384 SWALL:AAN67997 (EMBL:AE016783) (104 aa) fasta scores: E(): 8.6e-14, 40.77% id in 103 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2038 SWALL:Q9I277 (EMBL:AE004630) (104 aa) fasta scores: E(): 1.9e-13, 42.85% id in 98 aa
YP_051924.1	Similar to Pseudomonas putida branched-chain amino acid transport protein AzlC or pp2385 SWALL:AAN67998 (EMBL:AE016783) (230 aa) fasta scores: E(): 3e-36, 47.36% id in 209 aa, and to Vibrio cholerae AzlC family protein vca1002 SWALL:Q9KKU8 (EMBL:AE004427) (239 aa) fasta scores: E(): 1.2e-34, 44.79% id in 221 aa
YP_051925.1	Similar to Vibrio vulnificus AraC-type DNA-binding domain-containing protein vv20572 SWALL:AAO07518 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.1e-52, 48.36% id in 275 aa, and to Vibrio cholerae transcriptional regulator, AraC/XylS family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 3.6e-50, 50% id in 270 aa
YP_051926.1	Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 3.7e-77, 49.51% id in 515 aa, and to Salmonella typhimurium methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor trg or stm1626 SWALL:Q8ZPA9 (EMBL:AE008771) (541 aa) fasta scores: E(): 4.2e-82, 52.97% id in 521 aa
YP_051927.1	Similar to Influenza A virus matrix protein 2 M SWALL:Q9Q0L9 (EMBL:AF144306) (97 aa) fasta scores: E(): 1.4, 45.45% id in 33 aa
YP_051928.1	Similar to Yersinia pestis hypothetical protein y5204 or y1108 or ypmt1.54 SWALL:O68768 (EMBL:AF053947) (187 aa) fasta scores: E(): 7.6e-34, 56.88% id in 167 aa
YP_051929.1	activates sgrS under glucose-phosphate stress conditions
YP_051930.1	Similar to Cicer arietinum isoflavone reductase Ifr SWALL:IFR_CICAR (SWALL:Q00016) (318 aa) fasta scores: E(): 8.4e-10, 26.11% id in 291 aa, and to Salmonella typhi oxidoreductase sty1385 SWALL:Q8Z7A4 (EMBL:AL627270) (309 aa) fasta scores: E(): 3.6e-57, 54.88% id in 297 aa
YP_051931.1	Similar to Burkholderia cepacia  transcriptional regulator CeoR SWALL:Q8VL17 (EMBL:AY008288) (334 aa) fasta scores: E(): 1e-47, 45.27% id in 296 aa, and to Salmonella typhi  transcriptional regulator sty1386 SWALL:Q8Z7A3 (EMBL:AL627270) (301 aa) fasta scores: E(): 1.3e-47, 45.36% id in 302 aa
YP_051932.2	part of the thiamine and TPP transport system tbpA-thiPQ
YP_051933.1	permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine
YP_051934.2	with TbpA and ThiP is part of the thiamine and TPP transport system
YP_051935.1	Similar to Butyrivibrio fibrisolvens xylosidase/arabinosidase [includes: beta-xylosidase; alpha-L-arabinofuranosidase] xylB SWALL:XYLB_BUTFI (SWALL:P45982) (517 aa) fasta scores: E(): 4.4e-13, 25.19% id in 520 aa, and to Xanthomonas campestris xylosidase/arabinosidase xcc0149 SWALL:Q8PE34 (EMBL:AE012110) (526 aa) fasta scores: E(): 3.3e-128, 58.97% id in 507 aa
YP_051936.1	catalyzes the formation of 2-acetolactate from pyruvate
YP_051937.1	with IlvB catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase small subunit
YP_051938.1	Similar to Yersinia pestis  deda-family membrane protein ypo0519 or y3654 SWALL:Q8ZIH8 (EMBL:AJ414143) (255 aa) fasta scores: E(): 6.9e-66, 65.23% id in 256 aa, and to Escherichia coli O6 hypothetical protein yabi or c0081 SWALL:AAN78577 (EMBL:AE016755) (254 aa) fasta scores: E(): 5.8e-65, 66.53% id in 254 aa
YP_051939.1	Similar to Pseudomonas putida ggdef family protein pp2413 SWALL:AAN68025 (EMBL:AE016783) (544 aa) fasta scores: E(): 3.3e-96, 49.32% id in 515 aa, and to Ralstonia solanacearum probable transmembrane protein rsc1893 or rs03455 SWALL:Q8XY70 (EMBL:AL646067) (533 aa) fasta scores: E(): 8.9e-78, 44.14% id in 512 aa
YP_051940.1	Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C
YP_051941.1	transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA
YP_051942.1	Similar to Escherichia coli ribosomal large subunit pseudouridine synthase A RluA or b0058 SWALL:RLUA_ECOLI (SWALL:P39219) (218 aa) fasta scores: E(): 1.5e-68, 77.88% id in 217 aa
YP_051943.1	functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system
YP_051944.1	determines N-hexane tolerance and is involved in outer membrane permeability
YP_051945.1	Chaperone involved in the folding of extracytoplasmic proteins, especially OmpA, OmpF and LamB
YP_051946.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_051947.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_051948.1	protein associated with Co2+ and Mg2+ efflux
YP_051949.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_051950.1	Similar to Pseudomonas putida conserved hypothetical protein pp3609 SWALL:Q88GV8 (EMBL:AE016787) (176 aa) fasta scores: E(): 2.2e-29, 50.93% id in 161 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3320 SWALL:Q9HYS5 (EMBL:AE004754) (151 aa) fasta scores: E(): 1.7e-18, 46.37% id in 138 aa
YP_051951.1	Similar to Pseudomonas putida transcriptional regulator, LysR family pp3608 SWALL:AAN69208 (EMBL:AE016787) (309 aa) fasta scores: E(): 1.2e-68, 56.18% id in 299 aa, and to Pseudomonas glumae lys-r type regulatory protein toxR SWALL:Q8RS39 (EMBL:AB040403) (333 aa) fasta scores: E(): 9.1e-65, 55.1% id in 294 aa
YP_051952.1	catalyzes the reduction of dihydrofolate to tetrahydrofolate
YP_051953.1	Similar to Yersinia pestis  membrane protein ypo0485 SWALL:Q8ZIL1 (EMBL:AJ414143) (151 aa) fasta scores: E(): 1.8e-48, 85.06% id in 154 aa, and to Salmonella typhi  membrane protein sty4898 SWALL:Q8Z0W0 (EMBL:AL627284) (157 aa) fasta scores: E(): 2.1e-43, 71.97% id in 157 aa
YP_051954.1	Similar to Yersinia pestis  membrane protein ypo0484 or y3690 SWALL:Q8ZIL2 (EMBL:AJ414143) (266 aa) fasta scores: E(): 1.7e-82, 82.14% id in 252 aa, and to Salmonella typhi  membrane protein sty4899 SWALL:Q8Z0V9 (EMBL:AL627284) (303 aa) fasta scores: E(): 1.1e-75, 70.49% id in 261 aa
YP_051955.1	Similar to Yersinia pestis  lyse type translocator ypo0483 SWALL:Q8ZIL3 (EMBL:AJ414143) (204 aa) fasta scores: E(): 5.5e-66, 78.92% id in 204 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2710 pa2710 SWALL:Q9I0D2 (EMBL:AE004699) (204 aa) fasta scores: E(): 4.4e-59, 74.87% id in 203 aa
YP_051956.1	Similar to Rhizobium loti hypothetical protein Mll3207 SWALL:Q98GR5 (EMBL:AP003001) (131 aa) fasta scores: E(): 5.1e-21, 47.1% id in 121 aa, and to Pantoea agglomerans EhpR SWALL:AAN40889 (EMBL:AF451953) (129 aa) fasta scores: E(): 1.2e-05, 32.2% id in 118 aa
YP_051957.1	Similar to Rhizobium meliloti  transcription regulator protein r00227 or smc02902 SWALL:Q92SX3 (EMBL:AL591782) (230 aa) fasta scores: E(): 1.8e-52, 60.61% id in 226 aa, and to Xanthomonas axonopodis transcriptional regulator xac1298 SWALL:Q8PMX7 (EMBL:AE011760) (231 aa) fasta scores: E(): 3e-38, 50% id in 218 aa
YP_051958.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_051959.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_051960.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_051961.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_051962.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri FkbP-type 16 kDa peptidyl-prolyl cis-trans isomerase FkpB or SlpA or b0028 or c0032 or z0033 or ecs0031 or sf0024 SWALL:FKBX_ECOLI (SWALL:P22563) (148 aa) fasta scores: E(): 2.7e-33, 61.8% id in 144 aa
YP_051963.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_051964.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_051965.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_051966.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_051967.1	Na+/H+ antiporter regulatory protein; activates the genes nhaA and osmC
YP_051968.1	exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH
YP_051969.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_051970.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_051971.1	Similar to Yersinia pestis  membrane protein ypo0467 or y3707 SWALL:Q8ZIM8 (EMBL:AJ414142) (203 aa) fasta scores: E(): 7.3e-60, 84.86% id in 185 aa, and to Salmonella typhimurium, and Salmonella typhi  regulator yaah or stm0009 or sty0009 SWALL:Q8XGB2 (EMBL:AE008693) (188 aa) fasta scores: E(): 2.7e-54, 78.91% id in 185 aa
YP_051972.1	Similar to Yersinia pestis  transport protein ypo0465 or y3709 SWALL:Q8ZIN0 (EMBL:AJ414142) (462 aa) fasta scores: E(): 4e-123, 75.82% id in 426 aa, and to Pseudomonas putida major facilitator family transporter pp5330 SWALL:AAN70895 (EMBL:AE016794) (429 aa) fasta scores: E(): 2.5e-108, 67.95% id in 415 aa
YP_051973.1	forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis
YP_051974.1	Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa
YP_051975.1	Maintains the balance of metabolites in the pentose-phosphate pathway
YP_051976.1	Similar to Yersinia pestis hypothetical protein Ypo0462 SWALL:Q8ZIN3 (EMBL:AJ414142) (258 aa) fasta scores: E(): 5.4e-78, 79.76% id in 257 aa, and to Escherichia coli O6 protein yaaa or c0010 SWALL:AAN78510 (EMBL:AE016755) (258 aa) fasta scores: E(): 1.7e-77, 80.15% id in 257 aa
YP_051977.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_051978.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_051979.1	multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_051980.1	member of the SPOUT superfamily of methyltransferases
YP_051981.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri aerobic respiration control protein ArcA or Dye or FexA or SfrA or Seg or Msp or CpxC or b4401 or c5488 or z6004 or ecs5359 or sf4433 SWALL:ARCA_ECOLI (SWALL:P03026) (238 aa) fasta scores: E(): 6.2e-85, 94.11% id in 238 aa
YP_051982.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri crea protein CreA or b4397 or c5484 or z6000 or ecs5355 or sf4429 SWALL:CREA_ECOLI (SWALL:P08367) (157 aa) fasta scores: E(): 3e-45, 78.8% id in 151 aa, and to Yersinia pestis  exported protein ypo0457 or CreA or y3722 SWALL:Q8ZIN8 (EMBL:AJ414142) (155 aa) fasta scores: E(): 6.9e-47, 84.93% id in 146 aa
YP_051984.1	Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri right origin-binding protein Rob or b4396 or z5999 or ecs5354 or sf4428 SWALL:ROB_ECOLI (SWALL:P27292) (289 aa) fasta scores: E(): 5e-81, 67.01% id in 288 aa
YP_051985.1	catalyzes reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate
YP_051986.1	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog
YP_051987.1	When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription
YP_051988.1	catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N-acetylglucosamine residues in peptidoglycan
YP_051989.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_051990.1	Similar to Escherichia coli methyl-accepting chemotaxis protein III Trg or b1421 SWALL:MCP3_ECOLI (SWALL:P05704) (546 aa) fasta scores: E(): 2.9e-86, 54.69% id in 543 aa
YP_051991.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3135 SWALL:Q9HZ90 (EMBL:AE004737) (306 aa) fasta scores: E(): 4.1e-37, 38.92% id in 298 aa, and to Vibrio vulnificus transcriptional regulator vv21654 SWALL:AAO08512 (EMBL:AE016813) (307 aa) fasta scores: E(): 6.3e-35, 39.31% id in 290 aa
YP_051992.1	Similar to Rhizobium meliloti  oxidoreductase transmembrane protein r01036 or smc02380 SWALL:Q92R74 (EMBL:AL591785) (337 aa) fasta scores: E(): 3.6e-52, 46.26% id in 335 aa, and to Xanthomonas axonopodis oxidoreductase xac1011 SWALL:Q8PNP3 (EMBL:AE011730) (340 aa) fasta scores: E(): 1.4e-50, 46.15% id in 338 aa
YP_051993.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_051994.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_051995.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_051996.1	Similar to Yersinia pestis  exported protein ypo0917 SWALL:Q8ZHH7 (EMBL:AJ414145) (259 aa) fasta scores: E(): 4.9e-63, 75.83% id in 240 aa, and to Edwardsiella ictaluri hypothetical protein YggE SWALL:YGGE_EDWIC (SWALL:O52400) (239 aa) fasta scores: E(): 3.8e-55, 67.78% id in 239 aa
YP_051997.1	Involved in the export of arginine
YP_051998.1	Similar to Yersinia pestis  membrane protein ypo0919 or y3306 SWALL:Q8ZHH5 (EMBL:AJ414145) (289 aa) fasta scores: E(): 4.8e-77, 74.04% id in 289 aa, and to Escherichia coli O6 hypothetical protein yggb yggb or c3502 SWALL:AAN81950 (EMBL:AE016766) (286 aa) fasta scores: E(): 5.8e-69, 69.03% id in 281 aa
YP_051999.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_052000.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_052001.1	NAD-dependent; catalyzes the formation of 4-phosphoerythronate from erythrose 4-phosphate in the biosynthesis of pyridoxine 5'-phosphate
YP_052002.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_052003.1	Similar to Salmonella typhimurium, and Salmonella typhi  zn-dependent proteases with possible chaperone function yggg or stm3077 or sty3237 SWALL:Q8XGA5 (EMBL:AE008841) (252 aa) fasta scores: E(): 2.5e-63, 71.88% id in 249 aa, and to Yersinia pestis  lipoprotein ypo0927 SWALL:Q8ZHH0 (EMBL:AJ414145) (250 aa) fasta scores: E(): 1.3e-67, 76.4% id in 250 aa
YP_052004.1	Similar to Escherichia coli genes, complete cds, strain:b171 SWALL:Q93RC7 (EMBL:AB052736) (143 aa) fasta scores: E(): 0.18, 27.04% id in 122 aa
YP_052005.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_052007.1	methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_052008.1	Similar to Escherichia coli protein SprT or b2944 SWALL:SPRT_ECOLI (SWALL:P39902) (165 aa) fasta scores: E(): 4.5e-43, 68.51% id in 162 aa
YP_052009.1	Similar to Erwinia chrysanthemi nuclease NucM precursor NucM SWALL:NUCM_ERWCH (SWALL:P37994) (266 aa) fasta scores: E(): 7.3e-80, 78.69% id in 230 aa, and to Escherichia coli endonuclease I precursor enda or b2945 SWALL:END1_ECOLI (SWALL:P25736) (235 aa) fasta scores: E(): 6.3e-76, 74.02% id in 231 aa
YP_052010.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_052011.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_052012.1	Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa
YP_052013.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_052014.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_052015.1	Similar to Escherichia coli UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diamino pimelate ligase Mpl or b4233 SWALL:MPL_ECOLI (SWALL:P37773) (457 aa) fasta scores: E(): 9.9e-158, 82.05% id in 457 aa
YP_052016.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_052017.1	Similar to Yersinia pestis  membrane protein ypo0377 SWALL:Q8ZIV8 (EMBL:AJ414142) (66 aa) fasta scores: E(): 4e-19, 78.46% id in 65 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjet or b4176 or z5783 or ecs5152 or sf4331 SWALL:AAN45748 (EMBL:U14003) (65 aa) fasta scores: E(): 1.8e-17, 70.76% id in 65 aa
YP_052018.1	with HflK inhibits proteolysis of lambda cII protein by FtsH
YP_052019.1	with HflC inhibits proteolysis of lambda cII protein by FtsH
YP_052020.1	involved in modulation of proteins HflK and HflC; part of the hflA locus (high frequency of lysogenization) which governs the lysis-lysogeny decision of bacteriophage lambda by controlling stability of the phage cII protein
YP_052021.1	Stimulates the elongation of poly(A) tails
YP_052022.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_052023.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_052024.1	Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa
YP_052025.1	possibly involved in cell wall synthesis
YP_052026.1	Similar to Yersinia pestis hypothetical protein ypo0368 ypo0368 or y0625 SWALL:Q8ZIW7 (EMBL:AJ414142) (504 aa) fasta scores: E(): 6e-120, 62.13% id in 507 aa, and to Salmonella typhimurium  sugar kinase yjef or stm4356 SWALL:Q8ZKA7 (EMBL:AE008904) (515 aa) fasta scores: E(): 1.1e-118, 62.32% id in 507 aa
YP_052027.1	Similar to Escherichia coli O6  electron transport protein yjes or c5250 SWALL:AAN83672 (EMBL:AE016771) (394 aa) fasta scores: E(): 1.2e-129, 80.73% id in 379 aa, and to Salmonella typhimurium  fe-s protein yjes or stm4355 SWALL:Q8ZKA8 (EMBL:AE008904) (384 aa) fasta scores: E(): 7.6e-129, 79.94% id in 379 aa
YP_052028.1	Similar to Escherichia coli alkyl hydroperoxide reductase subunit F AhpF or b0606 SWALL:AHPF_ECOLI (SWALL:P35340) (521 aa) fasta scores: E(): 3.1e-149, 78.09% id in 525 aa
YP_052029.1	with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate
YP_052030.1	Similar to Xanthomonas campestris hypothetical protein Xcc2749 SWALL:Q8P764 (EMBL:AE012388) (618 aa) fasta scores: E(): 1.9e-27, 29.05% id in 592 aa, and to Caulobacter crescentus hypothetical protein Cc3419 SWALL:Q9A2Y7 (EMBL:AE006002) (582 aa) fasta scores: E(): 2.8e-27, 28.7% id in 554 aa
YP_052031.1	Similar to Chilo iridescent virus 073r SWALL:Q91G35 (EMBL:AF303741) (67 aa) fasta scores: E(): 8.1, 26.98% id in 63 aa
YP_052034.1	Similar to Pseudomonas putida D-isomer specific 2-hydroxyacid dehydrogenase family protein pp4589 SWALL:AAN70162 (EMBL:AE016791) (310 aa) fasta scores: E(): 4.3e-61, 56.63% id in 309 aa, and to Pseudomonas aeruginosa probable 2-hydroxyacid dehydrogenase pa1296 SWALL:Q9I448 (EMBL:AE004559) (310 aa) fasta scores: E(): 5.3e-54, 51.94% id in 308 aa
YP_052037.1	Similar to Xylella fastidiosa alcohol dehydrogenase xf1746 SWALL:Q9PCN2 (EMBL:AE003997) (349 aa) fasta scores: E(): 3.1e-116, 84.81% id in 349 aa, and to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yahk or b0325 SWALL:YAHK_ECOLI (SWALL:P75691) (349 aa) fasta scores: E(): 9.9e-111, 80.17% id in 348 aa
YP_052038.1	Similar to Pseudomonas putida transporter, LysE family pp0699 SWALL:AAN66324 (EMBL:AE016776) (204 aa) fasta scores: E(): 5.4e-51, 66.01% id in 203 aa, and to Rhizobium meliloti  amino acid efflux transmembrane protein r03051 or smc02484 SWALL:Q92LJ7 (EMBL:AL591792) (214 aa) fasta scores: E(): 1.5e-25, 39.8% id in 206 aa
YP_052039.1	Similar to Pseudomonas putida transcriptional regulator, LysR family pp0698 SWALL:AAN66323 (EMBL:AE016776) (305 aa) fasta scores: E(): 3.1e-76, 64.93% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 6.4e-26, 33.67% id in 297 aa
YP_052040.1	Similar to Pseudomonas putida major facilitator family transporter pp0702 SWALL:AAN66327 (EMBL:AE016776) (385 aa) fasta scores: E(): 3.2e-42, 39.62% id in 371 aa, and to Rhizobium loti probable transporter mll1210 SWALL:Q98L25 (EMBL:AP002996) (393 aa) fasta scores: E(): 2.8e-21, 27.82% id in 381 aa
YP_052041.1	Similar to Escherichia coli taurine transport ATP-binding protein TauB or ssib or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 2.6e-24, 36.82% id in 258 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu0159 or agr_c_259 SWALL:Q8UIY2 (EMBL:AE008990) (266 aa) fasta scores: E(): 7.8e-26, 35.79% id in 257 aa
YP_052042.1	Similar to Rhizobium meliloti  transport system permease ABC transporter protein r02573 or smc02345 SWALL:Q92MP0 (EMBL:AL591791) (287 aa) fasta scores: E(): 1e-24, 33.46% id in 245 aa, and to Pseudomonas putida ABC-type transporter membrane permease component TauC SWALL:Q8KZR5 (EMBL:AB086390) (279 aa) fasta scores: E(): 2e-19, 29.41% id in 255 aa
YP_052043.1	Similar to Bacillus subtilis  aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 8.5e-06, 23.17% id in 302 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4154 or agr_l_1399 SWALL:Q8U8D8 (EMBL:AE009345) (338 aa) fasta scores: E(): 1.3e-07, 29.91% id in 224 aa
YP_052044.1	Similar to Clostridium perfringens hypothetical protein Cpe0762 cpe0762 SWALL:Q8XMC7 (EMBL:AP003188) (230 aa) fasta scores: E(): 2.8e-26, 34.8% id in 227 aa, and to Bacillus subtilis YfnB yfnB SWALL:O06480 (EMBL:D86418) (235 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa
YP_052045.1	Similar to Pseudomonas aeruginosa probable MFS transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.2e-54, 44.2% id in 371 aa, and to Streptomyces capreolus hypothetical protein SWALL:CAD62207 (EMBL:X84374) (436 aa) fasta scores: E(): 8.2e-57, 44.53% id in 375 aa
YP_052046.1	Similar to Lactococcus lactis transcription regulator yrfa or ll1694 SWALL:Q9CEY9 (EMBL:AE006400) (100 aa) fasta scores: E(): 2.1e-10, 39.78% id in 93 aa, and to Rhizobium loti hypothetical protein Mll3509 SWALL:Q98G33 (EMBL:AP003002) (100 aa) fasta scores: E(): 7.9e-11, 47.61% id in 84 aa
YP_052047.1	Similar to Rhizobium loti hypothetical protein Mll5179 SWALL:Q98CE8 (EMBL:AP003005) (271 aa) fasta scores: E(): 1.5e-60, 55.72% id in 262 aa, and to Streptomyces coelicolor possible oxidoreductase sco0526 or scf11.06 SWALL:Q9RK83 (EMBL:AL939105) (277 aa) fasta scores: E(): 3.5e-44, 46.69% id in 257 aa
YP_052048.1	Similar to Rhizobium loti hypothetical protein Mll1199 SWALL:Q98L32 (EMBL:AP002996) (204 aa) fasta scores: E(): 3.2e-11, 29.01% id in 193 aa, and to Rhizobium meliloti  transcriptional regulator protein rb1009 or smb21569 SWALL:Q92US9 (EMBL:AL603645) (199 aa) fasta scores: E(): 1.1e-06, 27.55% id in 196 aa
YP_052051.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_052052.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_052053.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_052054.1	Similar to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 0, 77.97% id in 1108 aa, and to Yersinia pestis  membrane transport protein ypo0363 or y0619 SWALL:AAM84207 (EMBL:AJ414142) (1119 aa) fasta scores: E(): 0, 71.54% id in 1114 aa
YP_052055.1	lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_052056.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_052057.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_052058.1	part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB
YP_052059.1	in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane
YP_052060.1	lipocalin; globomycin-sensitive outer membrane lipoprotein
YP_052061.1	Similar to Shewanella oneidensis conserved hypothetical protein so1373 SWALL:AAN54438 (EMBL:AE015581) (116 aa) fasta scores: E(): 9.4e-33, 68.42% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1574 SWALL:Q9KRR2 (EMBL:AE004235) (127 aa) fasta scores: E(): 4.2e-32, 66.66% id in 114 aa
YP_052062.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri entericidin B precursor EcnB or b4147.2 or c5235 or z5754 or ecs5128.2 or sf4305 SWALL:ECNB_ECOLI (SWALL:P56549) (48 aa) fasta scores: E(): 2.8e-06, 61.53% id in 39 aa
YP_052063.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_052064.1	Similar to Yersinia pestis hypothetical protein ypo0353 or y0611 SWALL:Q8ZIY1 (EMBL:AJ414142) (342 aa) fasta scores: E(): 1e-110, 80.11% id in 342 aa, and to Escherichia coli O6 hypothetical protein yjek or c5231 SWALL:AAN83653 (EMBL:AE016771) (342 aa) fasta scores: E(): 7.7e-107, 75.73% id in 342 aa
YP_052065.1	Similar to Yersinia pestis  lipoprotein ypo0352 SWALL:Q8ZIY2 (EMBL:AJ414142) (128 aa) fasta scores: E(): 4.4e-29, 71.93% id in 114 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yjei precursor yjei or b4144 or c5228 or sf4298 SWALL:YJEI_ECOLI (SWALL:P39278) (117 aa) fasta scores: E(): 9.7e-24, 60.34% id in 116 aa
YP_052066.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_052068.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive
YP_052070.1	Similar to Escherichia coli O6 hypothetical protein yjbb or c4979 SWALL:AAN83405 (EMBL:AE016770) (543 aa) fasta scores: E(): 3.1e-138, 69.24% id in 543 aa, and to Salmonella typhimurium hypothetical protein yjbb or stm4189 SWALL:YJBB_SALTY (SWALL:P40730) (543 aa) fasta scores: E(): 4.1e-138, 69.98% id in 543 aa
YP_052071.1	Similar to Salmonella typhi possible membrane transport protein sty3340 SWALL:Q8Z3Q1 (EMBL:AL627277) (484 aa) fasta scores: E(): 4e-162, 82.02% id in 484 aa, and to Clostridium acetobutylicum 2-oxoglutarate/malate translocator cac1590 SWALL:Q97IQ0 (EMBL:AE007668) (476 aa) fasta scores: E(): 6.8e-87, 46.57% id in 481 aa
YP_052072.1	Similar to Salmonella typhimurium ferrioxamine B receptor precursor fFoxA or stm0364 SWALL:FOXA_SALTY (SWALL:Q56145) (702 aa) fasta scores: E(): 1.8e-207, 74.35% id in 702 aa
YP_052073.1	Similar to Bordetella pertussis AlcR SWALL:O52066 (EMBL:AF018255) (324 aa) fasta scores: E(): 1.6e-31, 38.85% id in 314 aa, and to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 2.3e-66, 57.72% id in 317 aa
YP_052074.1	one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity
YP_052075.1	regulates the glyoxylate bypass operon (aceBAK), which encodes isocitrate lyase, malate synthase and isocitrate dehydrogenase kinase/phosphorylase
YP_052076.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_052077.1	Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates
YP_052078.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_052079.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_052080.1	Similar to Yersinia pestis  transferase y4029 SWALL:AAM87573 (EMBL:AE014004) (193 aa) fasta scores: E(): 3.4e-50, 76.3% id in 173 aa, and to Salmonella typhi transferase yrda or sty4398 SWALL:Q8Z1W3 (EMBL:AL627282) (184 aa) fasta scores: E(): 6.7e-50, 74.43% id in 176 aa
YP_052081.1	Similar to Salmonella typhi hypothetical protein yrdb or sty4397 SWALL:Q8Z1W4 (EMBL:AL627282) (85 aa) fasta scores: E(): 1.2e-18, 58.82% id in 85 aa, and to Escherichia coli hypothetical protein yrdb or b3280 SWALL:YRDB_ECOLI (SWALL:P45795) (85 aa) fasta scores: E(): 1.7e-18, 58.02% id in 81 aa
YP_052082.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_052083.1	Similar to Shigella flexneri  DNA topoisomerase yrdd or sf3315 SWALL:AAN44778 (EMBL:AE015342) (180 aa) fasta scores: E(): 8.8e-54, 72.77% id in 180 aa, and to Salmonella typhi hypothetical protein yrdd or sty4394 SWALL:Q8Z1W7 (EMBL:AL627282) (180 aa) fasta scores: E(): 8.1e-53, 70% id in 180 aa
YP_052084.1	Similar to Escherichia coli, and Shigella flexneri protein Smg or b3284 or sf3316 SWALL:SMG_ECOLI (SWALL:P30853) (157 aa) fasta scores: E(): 6.6e-48, 76.43% id in 157 aa, and to Salmonella typhimurium, and Salmonella typhi Smg protein homolog Smg or stm3404 or sty4393 or t4100 SWALL:SMG_SALTY (SWALL:Q8XFK8) (157 aa) fasta scores: E(): 8.8e-49, 78.34% id in 157 aa
YP_052085.1	Similar to Escherichia coli Smf protein Smf or b3285/b3286 SWALL:SMF_ECOLI (SWALL:P30852) (374 aa) fasta scores: E(): 1.5e-79, 57.75% id in 374 aa, and to Yersinia pestis hypothetical protein ypo0243 ypo0243 or Smf1 or y4024 SWALL:Q8ZJ78 (EMBL:AJ414141) (373 aa) fasta scores: E(): 1.6e-82, 60.32% id in 373 aa
YP_052086.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_052087.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_052088.1	catalyzes the methylation of cytosine at position 967 (m5C967) of 16S rRNA; SAM-dependent methyltransferase
YP_052089.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_052090.1	forms homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_052091.1	Similar to Yersinia pestis hypothetical protein ypo0237 or y4018 SWALL:Q8ZJ84 (EMBL:AJ414141) (66 aa) fasta scores: E(): 3.9e-18, 74.24% id in 66 aa, and to Escherichia coli hypothetical protein yhdl or b3291.1 SWALL:YHDL_ECOLI (SWALL:P36675) (72 aa) fasta scores: E(): 4.3e-16, 60.87% id in 69 aa
YP_052092.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_052093.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_052094.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_052095.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_052096.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_052097.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_052098.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_052099.1	late assembly protein
YP_052100.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_052101.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_052102.1	binds 5S rRNA along with protein L5 and L25
YP_052103.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_052104.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_052105.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_052106.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_052107.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_052108.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_052109.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_052110.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 50S ribosomal protein L29 RpmC or b3312 or c4077 or z4683 or ecs4177 SWALL:RL29_ECOLI (SWALL:P02429) (63 aa) fasta scores: E(): 2.5e-18, 84.12% id in 63 aa
YP_052111.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_052112.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_052113.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_052114.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_052115.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_052116.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_052117.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_052118.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_052119.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_052120.1	iron storage protein
YP_052121.1	Similar to Escherichia coli, and Escherichia coli O6 bacterioferritin-associated ferredoxin Bfd or b3337 or c4108 SWALL:BFD_ECOLI (SWALL:P13655) (64 aa) fasta scores: E(): 4.1e-13, 56.25% id in 64 aa
YP_052122.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_052123.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_052124.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_052125.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_052126.1	Similar to Chromatium vinosum DsrH SWALL:O87898 (EMBL:U84760) (102 aa) fasta scores: E(): 3.5e-05, 32.32% id in 99 aa, and to Escherichia coli hypothetical protein yhel or b3343 SWALL:YHEL_ECOLI (SWALL:P45530) (95 aa) fasta scores: E(): 1.1e-14, 52.63% id in 95 aa
YP_052127.1	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs
YP_052128.1	in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs
YP_052129.1	Similar to Yersinia pestis  DNA-binding protein ypo0196 or y3978 SWALL:Q8ZJB9 (EMBL:AJ414141) (244 aa) fasta scores: E(): 1.9e-82, 90.41% id in 240 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yheo or b3346 or c4120 or sf3364 SWALL:YHEO_ECOLI (SWALL:P45533) (240 aa) fasta scores: E(): 9.4e-80, 85.83% id in 240 aa
YP_052130.1	with ZipA and an unidentified 24 kDa protein forms a complex involved in cell division
YP_052131.1	response regulator in two-component regulatory system with BasS
YP_052132.1	Similar to Pectobacterium carotovorum subsp. carotovorum sensor kinase PmrB SWALL:CAE47080 (EMBL:AJ583007) (364 aa) fasta scores: E(): 1.5e-125, 94.78% id in 364 aa, and to Escherichia coli sensor protein BasS or PmrB or b4112 SWALL:BASS_ECOLI (SWALL:P30844) (363 aa) fasta scores: E(): 9.5e-69, 58.64% id in 353 aa
YP_052133.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_052134.1	Similar to Xylella fastidiosa hypothetical protein Xf1717 SWALL:Q9PCR1 (EMBL:AE003995) (266 aa) fasta scores: E(): 5.6e-63, 71% id in 238 aa, and to Pseudomonas aeruginosa hypothetical upf0001 protein Pa0394 SWALL:Y394_PSEAE (SWALL:P24562) (230 aa) fasta scores: E(): 5.9e-29, 47.34% id in 226 aa
YP_052135.1	Similar to Pseudomonas aeruginosa probable transcriptional regulator pa4165 SWALL:Q9HWL6 (EMBL:AE004833) (496 aa) fasta scores: E(): 9.5e-124, 66.59% id in 500 aa, and to Salmonella typhi  gntr-family regulatory protein sty3762 SWALL:Q8Z301 (EMBL:AL627279) (493 aa) fasta scores: E(): 2.7e-66, 45.43% id in 493 aa
YP_052136.1	rotamase
YP_052137.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 SlyX protein slyx or b3348 or c4122 or z4706 or ecs4199 SWALL:SLYX_ECOLI (SWALL:P30857) (72 aa) fasta scores: E(): 5.2e-12, 59.72% id in 72 aa, and to Yersinia pestis host factor for lysis of phix174 infection SlyX or y3976 SWALL:AAM87520 (EMBL:AE014001) (72 aa) fasta scores: E(): 1.5e-13, 63.88% id in 72 aa
YP_052138.1	Similar to Xanthomonas campestris hypothetical protein Xcc0062 SWALL:Q8PEB9 (EMBL:AE012100) (116 aa) fasta scores: E(): 3.8e-29, 75.47% id in 106 aa, and to Rhizobium loti hypothetical protein Mll3985 SWALL:Q98F15 (EMBL:AP003003) (137 aa) fasta scores: E(): 3.7e-28, 76.47% id in 102 aa
YP_052139.1	Similar to Rhizobium loti hypothetical protein Mlr3986 SWALL:Q98F14 (EMBL:AP003003) (109 aa) fasta scores: E(): 1.3e-15, 47.22% id in 108 aa, and to Agrobacterium tumefaciens hypothetical protein atu5209 or agr_pat_291 SWALL:Q8UKB4 (EMBL:AE008943) (109 aa) fasta scores: E(): 1.4e-12, 40.18% id in 107 aa
YP_052140.1	Similar to Agrobacterium tumefaciens dehydrogenase atu5210 or agr_pat_293 SWALL:Q8UKB3 (EMBL:AE008943) (259 aa) fasta scores: E(): 9.5e-62, 65.11% id in 258 aa, and to Rhizobium meliloti sma1629 protein ra0888 or sma1629 SWALL:Q92YJ2 (EMBL:AE007275) (259 aa) fasta scores: E(): 1.4e-64, 70.86% id in 254 aa
YP_052141.1	rotamase
YP_052142.1	Similar to Yersinia pestis hypothetical protein ypo0192 or y3973 SWALL:Q8ZJC3 (EMBL:AJ414141) (73 aa) fasta scores: E(): 1.2e-12, 60% id in 65 aa, and to Shigella flexneri orf, conserved hypothetical protein yhev or sf3368 SWALL:AAN44831 (EMBL:AE015345) (66 aa) fasta scores: E(): 4.4e-11, 50% id in 64 aa
YP_052143.1	involved in potassium efflux
YP_052144.1	required for KefB activity
YP_052145.1	Similar to Salmonella typhi probable ABC transporter ATP-binding protein yhes or sty4339 SWALL:Q8Z1Y8 (EMBL:AL627281) (635 aa) fasta scores: E(): 8.5e-168, 82.2% id in 635 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein yhes or b3352 or z4713 or ecs4203 SWALL:YHES_ECOLI (SWALL:P45535) (637 aa) fasta scores: E(): 1.9e-167, 82.91% id in 632 aa
YP_052146.1	Similar to Yersinia pestis  ABC-transport protein ypo0181 SWALL:Q8ZJD2 (EMBL:AJ414141) (200 aa) fasta scores: E(): 4.2e-65, 80.5% id in 200 aa, and to Shewanella oneidensis transporter, lyse family so1716 SWALL:AAN54770 (EMBL:AE015617) (197 aa) fasta scores: E(): 9e-24, 36.73% id in 196 aa
YP_052147.1	Similar to Yersinia pestis hypothetical protein ypo0180 or y3961 SWALL:AAM87505 (EMBL:AJ414141) (326 aa) fasta scores: E(): 1.3e-103, 73.31% id in 326 aa, and to Escherichia coli O157:H7 orf, hypothetical protein yhet or z4714 or ecs4204 SWALL:Q8X873 (EMBL:AE005558) (340 aa) fasta scores: E(): 3.5e-95, 69.27% id in 319 aa
YP_052148.1	Similar to Yersinia pestis hypothetical protein ypo0179 or y3960 SWALL:AAM87504 (EMBL:AJ414141) (78 aa) fasta scores: E(): 1.1e-19, 73.97% id in 73 aa, and to Salmonella typhi hypothetical protein yheu or sty4334 SWALL:Q8Z1Z0 (EMBL:AL627281) (72 aa) fasta scores: E(): 1.2e-19, 77.14% id in 70 aa
YP_052149.1	Similar to Alcaligenes eutrophus phosphoribulokinase, plasmid CfxP SWALL:KPPP_ALCEU (SWALL:P19924) (291 aa) fasta scores: E(): 6.8e-62, 56.69% id in 284 aa, and to Escherichia coli, and Shigella flexneri probable phosphoribulokinase PrkB or b3355 or sf3374 SWALL:KPPR_ECOLI (SWALL:P37307) (289 aa) fasta scores: E(): 8.9e-100, 86.15% id in 289 aa
YP_052150.1	Similar to Yersinia pestis hypothetical protein ypo0176 or y3957 SWALL:AAM87501 (EMBL:AJ414141) (135 aa) fasta scores: E(): 1.9e-46, 89.39% id in 132 aa, and to Erwinia chrysanthemi orf2 protein SWALL:O07095 (EMBL:X89443) (135 aa) fasta scores: E(): 1.3e-45, 89.31% id in 131 aa
YP_052151.1	complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons
YP_052152.1	DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate
YP_052153.1	aminodeoxychorismate synthase subunit PabA; with PabB catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine in para-aminobenzoate synthesis; PabA provides the glutamine amidotransferase activity
YP_052154.1	Similar to Erwinia carotovora pectate lyase I precursor Pel1 or PelA SWALL:PEL1_ERWCA (SWALL:P11430) (374 aa) fasta scores: E(): 1.3e-143, 97.05% id in 374 aa, and to Erwinia carotovora pectate lyase II precursor pel2 or pelB SWALL:PEL2_ERWCA (SWALL:P11431) (374 aa) fasta scores: E(): 8.6e-136, 90.1% id in 374 aa. Also similar to ECA4068 (88.503% id. in 374 aa overlap), and to ECA4069 (83.110% id. in 373 aa overlap)
YP_052155.1	Similar to Erwinia carotovora pectate lyase II precursor Pel2 or PelB SWALL:PEL2_ERWCA (SWALL:P11431) (374 aa) fasta scores: E(): 3.8e-143, 94.11% id in 374 aa, and to Erwinia chrysanthemi pectate lyase B precursor PelB SWALL:PELB_ERWCH (SWALL:P04959) (375 aa) fasta scores: E(): 2.8e-112, 73.06% id in 375 aa. Also similar to ECA4067 (88.503% id. in 374 aa overlap), and to ECA4069 (82% id. in 373 aa overlap)
YP_052156.1	Similar to Erwinia carotovora pectate lyase III precursor Pel3 or PelC or PelcI SWALL:PEL3_ERWCA (SWALL:P29171) (374 aa) fasta scores: E(): 1.1e-143, 95.72% id in 374 aa. Also similar to ECA4067 (83.110% id. in 374 aa overlap), and to ECA4068 (82.038% id. in 373 aa overlap)
YP_052157.1	Similar to Erwinia chrysanthemi pectate lyase precursor PelZ SWALL:P94773 (EMBL:X97119) (420 aa) fasta scores: E(): 5.1e-120, 72.53% id in 426 aa
YP_052158.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptidyl-prolyl cis-trans isomerase A precursor PpiA or RotA or Rot or b3363 or c4138 or z4724 or ecs4214 SWALL:PPIA_ECOLI (SWALL:P20752) (190 aa) fasta scores: E(): 2.1e-57, 79.47% id in 190 aa
YP_052159.1	Similar to Rhizobium meliloti  dipeptide transport ATP-binding ABC transporter protein dppf2 or r02409 or smc01529 SWALL:Q92N30 (EMBL:AL591790) (255 aa) fasta scores: E(): 4.6e-46, 53.93% id in 254 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3456 or agr_l_2744 SWALL:Q8UAB8 (EMBL:AE009276) (259 aa) fasta scores: E(): 4e-46, 53.06% id in 245 aa
YP_052160.1	Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3457 or agr_l_2743 SWALL:Q8UAB7 (EMBL:AE009276) (278 aa) fasta scores: E(): 6.5e-62, 65.07% id in 272 aa, and to Rhizobium meliloti  dipeptide transport ATP-binding ABC transporter protein dppd2 or r02410 or smc01528 SWALL:Q92N29 (EMBL:AL591790) (277 aa) fasta scores: E(): 3e-58, 61.99% id in 271 aa
YP_052161.1	Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti  dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa
YP_052162.1	Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3459 or agr_l_2740 SWALL:Q8UAB5 (EMBL:AE009276) (360 aa) fasta scores: E(): 2.4e-83, 63.15% id in 342 aa, and to Rhizobium meliloti  dipeptide transport system permease ABC transporter protein dppb2 or r02412 or smc01526 SWALL:Q92N27 (EMBL:AL591790) (347 aa) fasta scores: E(): 1.7e-70, 56.4% id in 328 aa
YP_052163.1	Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3455 or agr_l_2748 SWALL:Q8UAB9 (EMBL:AE009275) (549 aa) fasta scores: E(): 1.1e-105, 50.65% id in 535 aa, and to Rhizobium meliloti  dipeptide binding periplasmic protein dppa2 or r02413 or smc01525 SWALL:Q92N26 (EMBL:AL591790) (546 aa) fasta scores: E(): 2.5e-43, 38.6% id in 531 aa
YP_052164.1	Similar to Agrobacterium tumefaciens isomerase/lactonizing enzyme atu3453 or agr_l_2751 SWALL:Q8UAC1 (EMBL:AE009275) (407 aa) fasta scores: E(): 1.1e-110, 65.17% id in 379 aa, and to Sulfolobus tokodaii dgoa protein st2366 SWALL:Q96Y01 (EMBL:AP000989) (396 aa) fasta scores: E(): 2.9e-21, 27.64% id in 369 aa
YP_052166.1	Similar to Escherichia coli nitrite reductase [NAD(P)H] large subunit NirB or b3365 SWALL:NIRB_ECOLI (SWALL:P08201) (847 aa) fasta scores: E(): 0, 80.45% id in 844 aa
YP_052167.1	involved in reducing nitrite to ammonium to detoxify nitrite accumulation in anaerobic nitrate-respiring cells and regenerate NAD+; bounds to NirB, the cytoplasmic subunit, whose expression is induced at high nitrate concentrations
YP_052168.1	multifunction enzyme consisting of uroporphyrin-III C-methyltransferase, precorrin-2 dehydrogenase and sirohydrochlorin ferrochelatase; catalyzes the methylation of uroporphyrinogen III to form precorrin-2, then catalyzes formation of sirohydrochlorin from precorrin-2 and finally catalyzed the formation of siroheme from sirohydrochlorin
YP_052169.1	Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine transport system permease protein OccQ SWALL:OCCQ_AGRTU (SWALL:P35119) (237 aa) fasta scores: E(): 3e-44, 51.94% id in 231 aa, and to Rhizobium meliloti octopine transport system permease protein OccQ SWALL:OCCQ_RHIME (SWALL:P72295) (237 aa) fasta scores: E(): 9.3e-43, 50.64% id in 233 aa
YP_052170.1	Similar to Agrobacterium tumefaciens octopine transport system permease protein OccM SWALL:OCM2_AGRTU (SWALL:P35115) (245 aa) fasta scores: E(): 1e-50, 60.44% id in 225 aa, and to Rhizobium meliloti octopine transport system permease protein OccM occM SWALL:OCCM_RHIME (SWALL:P72296) (245 aa) fasta scores: E(): 1.2e-50, 60.81% id in 222 aa
YP_052171.1	Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine permease ATP-binding protein P OccP SWALL:OCCP_AGRTU (SWALL:P35117) (262 aa) fasta scores: E(): 4.5e-56, 63.85% id in 249 aa
YP_052172.1	Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine-binding periplasmic protein precursor OccT or OccJ SWALL:OCCT_AGRTU (SWALL:P35121) (276 aa) fasta scores: E(): 1.3e-38, 46.01% id in 276 aa, and to Rhizobium meliloti octopine-binding periplasmic protein precursor OccT SWALL:OCCT_RHIME (SWALL:P72298) (294 aa) fasta scores: E(): 5.7e-33, 43.34% id in 293 aa
YP_052173.1	Similar to Escherichia coli aminobenzoyl-glutamate utilization protein B AbgB or b1337 SWALL:ABGB_ECOLI (SWALL:P76052) (481 aa) fasta scores: E(): 3.5e-63, 47.23% id in 470 aa
YP_052174.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_052175.1	catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate
YP_052176.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribulose-phosphate 3-epimerase Rpe or Dod or b3386 or c4156 or z4739 or ecs4228 or sf3404 SWALL:RPE_ECOLI (SWALL:P32661) (225 aa) fasta scores: E(): 5.1e-71, 83.92% id in 224 aa
YP_052177.1	Similar to Escherichia coli, and Escherichia coli O157:H7 DNA adenine methylase Dam or b3387 or z4740 or ecs4229 SWALL:DMA_ECOLI (SWALL:P00475) (278 aa) fasta scores: E(): 2.7e-78, 70% id in 270 aa
YP_052178.1	Similar to Escherichia coli DamX protein DamX or b3388 SWALL:DAMX_ECOLI (SWALL:P11557) (427 aa) fasta scores: E(): 4.4e-14, 40.15% id in 381 aa
YP_052179.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_052180.1	type I enzyme similar to type II but differentially regulated; major shikimate kinase in fully repressed cells; catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_052181.2	outer membrane porin probably involved in uptake of extracellular double-stranded DNA; similar to outer membrane competence protein ComE from Haemophilus influenzae and outer membrane protein PilQ involved in type IV pilus production from Pseudomonas aeruginosa
YP_052182.1	Similar to Yersinia pestis  membrane protein ypo0149 SWALL:Q8ZJF9 (EMBL:AJ414141) (122 aa) fasta scores: E(): 0.013, 29.41% id in 85 aa
YP_052183.1	Similar to Yersinia pestis hypothetical y3928 SWALL:AAM87472 (EMBL:AE013997) (208 aa) fasta scores: E(): 5, 23.78% id in 185 aa
YP_052184.1	Similar to Yersinia pestis  membrane protein ypo0147 SWALL:Q8ZJG1 (EMBL:AJ414141) (201 aa) fasta scores: E(): 7e-07, 25.77% id in 194 aa, and to Salmonella typhi  membrane protein yrfc or sty4305 SWALL:Q8Z209 (EMBL:AL627281) (179 aa) fasta scores: E(): 6.7e-05, 29.25% id in 147 aa
YP_052185.1	Similar to Yersinia pestis hypothetical protein ypo0146 or y3925 SWALL:Q8ZJG2 (EMBL:AJ414141) (313 aa) fasta scores: E(): 7.5e-48, 45.54% id in 292 aa, and to Salmonella typhi hypothetical protein yrfd or t4014 SWALL:AAO71484 (EMBL:AE016847) (259 aa) fasta scores: E(): 8.5e-14, 29.74% id in 279 aa
YP_052186.1	bifunctional murein transglycosylase/murein transpeptidase; penicillin-binding protein 1A; involved in the synthesis of cross-linked peptidoglycan from the lipid intermediates in cell wall formation; penicillin-insensitive transglycosylase catalyzes the formation of linear glycan strands and the penicillin-sensitive transpeptidase catalyzes the cross-linking of the peptide subunits
YP_052187.1	ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose
YP_052188.1	Similar to Yersinia pestis hypothetical protein Ypo0143 SWALL:Q8ZJG5 (EMBL:AJ414141) (64 aa) fasta scores: E(): 0.17, 36.17% id in 47 aa
YP_052189.1	Similar to Salmonella typhimurium intracellular growth attenuator protein IgaA or stm3495 SWALL:IGAA_SALTY (SWALL:Q9ACP0) (710 aa) fasta scores: E(): 2.3e-132, 50.14% id in 716 aa, and to Proteus mirabilis flagellar operon control protein UmoB SWALL:UMOB_PROMI (SWALL:O86988) (702 aa) fasta scores: E(): 1.8e-100, 40.11% id in 698 aa
YP_052190.1	Similar to Yersinia pestis hypothetical protein ypo0141 or y3921 SWALL:AAM87465 (EMBL:AJ414141) (226 aa) fasta scores: E(): 4.7e-69, 76.57% id in 222 aa, and to Salmonella typhi  hydrolase yrfg or sty4300 SWALL:Q8Z212 (EMBL:AL627281) (236 aa) fasta scores: E(): 7.2e-59, 65.31% id in 222 aa
YP_052191.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 heat shock protein 15 HslR or b3400 or c4171 or z4754 or ecs4242 SWALL:HSLR_ECOLI (SWALL:P45802) (133 aa) fasta scores: E(): 2.3e-36, 77.59% id in 125 aa
YP_052192.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_052193.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_052194.1	membrane-localized osmosensor; histidine kinase; in high osmolarity EnvZ autophosphorylates itself and transfers phosphoryl group to OmpR
YP_052195.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_052196.1	Similar to Rhizobium fredii Y4yB SWALL:Q9EUG6 (EMBL:AF229441) (142 aa) fasta scores: E(): 8.8e-12, 38.58% id in 127 aa, and to Ralstonia solanacearum hypothetical protein rsp0413 or rs00870 SWALL:Q8XSQ4 (EMBL:AL646078) (146 aa) fasta scores: E(): 3.2e-29, 55.97% id in 134 aa
YP_052197.1	Similar to Yersinia pestis  periplasmic substrate-binding transport protein ypo1310 SWALL:Q8ZGI7 (EMBL:AJ414147) (381 aa) fasta scores: E(): 3.8e-43, 34.91% id in 358 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 3.1e-81, 52.18% id in 366 aa
YP_052198.1	Similar to Rhizobium fredii Y4xM SWALL:Q8RQC1 (EMBL:AF229441) (404 aa) fasta scores: E(): 8.6e-66, 49.87% id in 389 aa, and to Rhizobium sp. hypothetical transport protein y4xM SWALL:Y4XM_RHISN (SWALL:P55705) (404 aa) fasta scores: E(): 1.9e-66, 49.74% id in 392 aa
YP_052199.1	Similar to Arthrobacter sp. opine dehydrogenase Odh SWALL:ODH_ARTSP (SWALL:Q44297) (359 aa) fasta scores: E(): 0.53, 26.42% id in 352 aa, and to Rhizobium fredii Y4xO SWALL:Q8RQB9 (EMBL:AF229441) (406 aa) fasta scores: E(): 2.7e-78, 54.83% id in 372 aa, and to Haliotis discus hannai tauropine dehydrogenase TadH SWALL:Q8N0N9 (EMBL:AB085184) (405 aa) fasta scores: E(): 6.1e-16, 24.33% id in 374 aa, and to Pecten maximus octopine dehydrogenase Odh1 SWALL:Q9BHM6 (EMBL:AJ237916) (399 aa) fasta scores: E(): 1.3e-12, 24.39% id in 369 aa
YP_052200.1	Similar to Streptomyces venezuelae cystathionine beta-synthase cbssV SWALL:Q9EYM7 (EMBL:AF319543) (463 aa) fasta scores: E(): 1.5e-28, 36.81% id in 326 aa, and to Rhizobium fredii Y4xP SWALL:Q8RQB8 (EMBL:AF229441) (336 aa) fasta scores: E(): 1.6e-81, 69.06% id in 333 aa
YP_052201.1	Similar to Selenomonas ruminantium lysine/ornithine decarboxylase Ldc SWALL:DCLO_SELRU (SWALL:O50657) (393 aa) fasta scores: E(): 4.2e-06, 26.53% id in 245 aa, and to Rhizobium fredii Y4yA SWALL:Q9EUG5 (EMBL:AF229441) (450 aa) fasta scores: E(): 6.6e-73, 49.08% id in 438 aa
YP_052202.1	Similar to Ralstonia solanacearum probable ferric siderophore receptor protein rsp0414 or rs00871 SWALL:Q8XSQ3 (EMBL:AL646078) (746 aa) fasta scores: E(): 2.3e-136, 51.09% id in 734 aa, and to Vibrio anguillarum ferric anguibactin receptor precursor fatA SWALL:FATA_VIBAN (SWALL:P11461) (726 aa) fasta scores: E(): 3.5e-79, 35.45% id in 722 aa
YP_052203.1	Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucC SWALL:IUCC_ECOLI (SWALL:Q47318) (580 aa) fasta scores: E(): 9.5e-19, 29.59% id in 321 aa, and to Legionella pneumophila FrgA SWALL:P94901 (EMBL:U76559) (575 aa) fasta scores: E(): 2.6e-18, 23.43% id in 542 aa
YP_052204.1	Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 4.4e-11, 30.13% id in 302 aa, and to Brucella melitensis citrate lyase beta chain bmeii1074 SWALL:Q8YB27 (EMBL:AE009739) (274 aa) fasta scores: E(): 1.3e-22, 40.71% id in 280 aa
YP_052205.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_052206.1	Similar to Shewanella oneidensis acyltransferase family protein so1238 SWALL:AAN54306 (EMBL:AE015568) (619 aa) fasta scores: E(): 3.1e-116, 48.86% id in 571 aa, and to Vibrio cholerae conserved hypothetical protein/hemolysin,  vca0646 SWALL:Q9KLU5 (EMBL:AE004394) (605 aa) fasta scores: E(): 3.4e-53, 32.84% id in 551 aa
YP_052207.1	Similar to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 5.6e-48, 37.8% id in 574 aa, and to Rahnella aquatilis  methyl-accepting chemotaxis protein i SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 5.9e-58, 39.64% id in 560 aa
YP_052208.1	Similar to Escherichia coli, and Escherichia coli O6 citrate synthase GltA or GluT or IcdB or b0720 or c0796 SWALL:CISY_ECOLI (SWALL:P00891) (427 aa) fasta scores: E(): 2e-119, 63.91% id in 424 aa
YP_052209.1	Similar to Bordetella pertussis Tex protein WALL:TEX_BORPE (SWALL:Q45388) (791 aa) fasta scores: E(): 1.7e-165, 60.15% id in 783 aa, and to Salmonella typhi transcription accessory protein sty4292 SWALL:Q8Z218 (EMBL:AL627281) (776 aa) fasta scores: E(): 0, 83.67% id in 778 aa
YP_052210.1	Similar to Pectobacterium carotovorum subsp. carotovorum RexZ SWALL:Q9RB26 (EMBL:AF135394) (262 aa) fasta scores: E(): 9.6e-102, 96.56% id in 262 aa
YP_052211.1	transports degraded pectin products into the bacterial cell
YP_052212.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_052213.1	Similar to Escherichia coli L-asparaginase II precursor AnsB or b2957 SWALL:ASG2_ECOLI (SWALL:P00805) (348 aa) fasta scores: E(): 3.5e-42, 43.5% id in 354 aa, and to Erwinia chrysanthemi L-asparaginase precursor AnsB or Asn SWALL:ASPG_ERWCH (SWALL:P06608) (348 aa) fasta scores: E(): 9.6e-55, 54.26% id in 328 aa
YP_052214.1	Similar to Pseudomonas putida ABC efflux transporter, permease protein,  pp0506 SWALL:AAN66134 (EMBL:AE016775) (421 aa) fasta scores: E(): 3.1e-13, 30.02% id in 423 aa, and to Vibrio cholerae hypothetical protein Vc2554 SWALL:Q9KP25 (EMBL:AE004324) (421 aa) fasta scores: E(): 2.7e-10, 27.86% id in 427 aa
YP_052215.1	Similar to Pseudomonas putida ABC transporter, ATP-binding protein,  pp2317 SWALL:AAN67930 (EMBL:AE016782) (228 aa) fasta scores: E(): 5.5e-24, 42.85% id in 224 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical ABC transporter ATP-binding protein ybba or b0495 or z0648 or ecs0557 or sf0439 SWALL:AAN42094 (EMBL:AE000155) (228 aa) fasta scores: E(): 3.7e-24, 44.09% id in 220 aa
YP_052216.1	Similar to Deinococcus radiodurans hypothetical protein Drb0048 SWALL:Q9RZR7 (EMBL:AE001826) (152 aa) fasta scores: E(): 9.8e-20, 48.36% id in 122 aa
YP_052217.1	Similar to Schizophyllum commune alkaline phosphatase Pho1 SWALL:Q9UR10 (EMBL:AF209194) (604 aa) fasta scores: E(): 5.3e-20, 32.91% id in 477 aa, and to Schizosaccharomyces pombe alkaline phosphatase spbc14f5.13C SWALL:PPB_SCHPO (SWALL:O60109) (532 aa) fasta scores: E(): 8.8e-15, 26.68% id in 491 aa
YP_052218.1	Similar to Escherichia coli probable aminoglycoside efflux pump AcrD or b2470 SWALL:ACRD_ECOLI (SWALL:P24177) (1037 aa) fasta scores: E(): 0, 79.51% id in 1035 aa, and to Escherichia coli acriflavine resistance protein B AcrB or AcrE or b0462 SWALL:ACRB_ECOLI (SWALL:P31224) (1049 aa) fasta scores: E(): 0, 64.87% id in 1042 aa
YP_052219.1	Similar to Escherichia coli BioH protein BioH or BioB or b3412 SWALL:BIOH_ECOLI (SWALL:P13001) (256 aa) fasta scores: E(): 1.2e-69, 69.29% id in 254 aa, and to Serratia marcescens  hydrolase BioH SWALL:BAC53660 (EMBL:AB089611) (255 aa) fasta scores: E(): 1.9e-71, 74.11% id in 255 aa
YP_052220.1	involved in high-affinity gluconate transport
YP_052221.1	cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source
YP_052222.1	amylomaltase; acts to release glucose from maltodextrins
YP_052223.1	Similar to Escherichia coli maltodextrin phosphorylase MalP or b3417 SWALL:PHSM_ECOLI (SWALL:P00490) (796 aa) fasta scores: E(): 2.1e-214, 66.91% id in 801 aa
YP_052224.1	represses the glpD, glpFK, glpTQ, and glpACB operons involved in glycerol-3-phosphate metabolism
YP_052225.1	protease responsible for the cleavage between Ser and Asp residues of proteins in regions of high local hydrophilicity
YP_052226.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri thiosulfate sulfurtransferase GlpE or b3425 or c4202 or sf3447 SWALL:GLPE_ECOLI (SWALL:P09390) (108 aa) fasta scores: E(): 8e-23, 61.16% id in 103 aa
YP_052227.1	Similar to Xenorhabdus nematophilus glyoxalase GloA SWALL:Q8RLU7 (EMBL:AY077466) (132 aa) fasta scores: E(): 3.7e-36, 74.26% id in 136 aa, and to Clostridium acetobutylicum predicted aldoketomutase of glyoxalase i family cac2466 SWALL:Q97GA3 (EMBL:AE007746) (132 aa) fasta scores: E(): 5.2e-18, 46.66% id in 135 aa
YP_052228.1	in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane
YP_052229.1	Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 1.5e-106, 47.15% id in 615 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 4.8e-124, 51.84% id in 652 aa
YP_052230.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa3293 SWALL:Q9HYV0 (EMBL:AE004751) (271 aa) fasta scores: E(): 1.8, 25.9% id in 220 aa
YP_052231.1	Similar to Pseudomonas resinovorans hypothetical protein SWALL:BAC41541 (EMBL:AB088420) (170 aa) fasta scores: E(): 3.6, 25.17% id in 143 aa, and to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 3.6, 25.17% id in 143 aa
YP_052232.1	Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 5.5, 26.02% id in 146 aa
YP_052233.1	Similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.0057, 25.85% id in 410 aa
YP_052234.1	Similar to Escherichia coli, and Shigella flexneri glycogen phosphorylase GlgP or GlgY or b3428 or sf3451 SWALL:PHSG_ECOLI (SWALL:P13031) (815 aa) fasta scores: E(): 0, 77.91% id in 815 aa
YP_052235.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_052236.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_052237.1	catalyzes the hydrolysis of the alpha-1,6-glucosidic linkages in partially depolymerized glycogen
YP_052238.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_052239.1	Similar to Yersinia pestis  membrane protein ypo3943 or y3885 SWALL:Q8ZA74 (EMBL:AJ414159) (565 aa) fasta scores: E(): 5.9e-173, 82.11% id in 559 aa, and to Shigella flexneri 2a str. 2457T  2-component sensor protein yehu or s2325 SWALL:AAP17542 (EMBL:AE016985) (561 aa) fasta scores: E(): 8e-149, 68.84% id in 552 aa
YP_052240.1	Similar to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 1.7e-30, 36.53% id in 364 aa, and to Caulobacter crescentus hypothetical protein Cc2770 SWALL:Q9A4R0 (EMBL:AE005942) (435 aa) fasta scores: E(): 2.8e-12, 31.42% id in 366 aa
YP_052241.1	Similar to Salmonella typhimurium  transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 0.00035, 26.92% id in 104 aa, and to Vibrio vulnificus conserved hypothetical protein vv12191 SWALL:AAO10575 (EMBL:AE016804) (107 aa) fasta scores: E(): 0.023, 32.96% id in 91 aa
YP_052242.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_052244.1	YhgN; Ec0197; hydrolyzes nucleoside triphosphates with an O6 atom-containing purine base to nucleoside monophosphate and pyrophosphate; seems to play a role in the elimination of aberrant purine-derived nucleotides containing the 6-keto group; shows preference for deoxyinosine triphosphate and xanthosine triphosphate over standard nucleoside triphosphates (dATP, dCTP, dGTP, and dTTP)
YP_052245.1	Similar to Corynebacterium glutamicum gluconate permease GntP or cgl2908 SWALL:Q9AL75 (EMBL:AJ296014) (463 aa) fasta scores: E(): 4.9e-91, 57.01% id in 442 aa, and to Pasteurella multocida GntP GntP_1 or pm0793 SWALL:Q9CMM5 (EMBL:AE006118) (449 aa) fasta scores: E(): 7.8e-114, 69.7% id in 449 aa
YP_052246.1	Partial CDS. Similar to the N-terminal regions of Escherichia coli thermosensitive gluconokinase IdnK or GntV or b4268 SWALL:IDNK_ECOLI (SWALL:P39208) (187 aa) fasta scores: E(): 2.8e-13, 61.42% id in 70 aa, and to Yersinia pestis  thermosensitive gluconokinase idnk or ypo2540 or gntv or y1646 SWALL:AAM85215 (EMBL:AJ414152) (178 aa) fasta scores: E(): 3.1e-17, 78.57% id in 70 aa
YP_052247.1	Partial CDS. Similar to the C-terminal regions of Escherichia coli, and Escherichia coli O6 gluconate utilization system Gnt-I transcriptional repressor GntR or b3438 or c4227 SWALL:GNTR_ECOLI (SWALL:P46860) (331 aa) fasta scores: E(): 4.1e-47, 78.36% id in 171 aa, and to Yersinia pestis gluconate utilization system Gnt-I transcriptional repressor gntr or ypo3955 or y3873 SWALL:Q8ZA63 (EMBL:AJ414160) (331 aa) fasta scores: E(): 1.8e-47, 78.94% id in 171 aa
YP_052248.1	Similar to Alteromonas sp. beta-hexosaminidase A precursor Cht60 SWALL:HEXA_ALTSO (SWALL:P48823) (598 aa) fasta scores: E(): 1.2e-60, 37.11% id in 590 aa, and to Ralstonia solanacearum  hydrolase glycosidase protein rsc0769 or rs05085 SWALL:Q8Y1C1 (EMBL:AL646060) (734 aa) fasta scores: E(): 3.2e-82, 45.02% id in 653 aa
YP_052249.1	Similar to Yersinia pestis hypothetical protein ypo3956 or y3872 SWALL:Q8ZA62 (EMBL:AJ414160) (231 aa) fasta scores: E(): 2.2e-82, 82.25% id in 231 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yhhw or stm3544 or sty4267 SWALL:Q8XFI4 (EMBL:AE008863) (231 aa) fasta scores: E(): 4.1e-81, 80.95% id in 231 aa
YP_052250.1	anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate
YP_052251.1	sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters
YP_052252.1	anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor
YP_052253.1	catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell
YP_052254.1	hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic
YP_052255.1	purine and pyrimidine nucleotides are secondary substrates; yigL expression is regulated by heat shock, osmotic shock and starvation of glucose, phosphate or ammonium
YP_052256.1	lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates
YP_052257.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri homoserine/homoserine lactone efflux protein RhtB or b3824 or c4746 or z5345 or ecs4754 or sf3902 SWALL:RHTB_ECOLI (SWALL:P27847) (206 aa) fasta scores: E(): 1.1e-63, 77.18% id in 206 aa. Also similar to ECA0827 (RhtB) (36.019% id. in 211 aa overlap)
YP_052258.1	Similar to Escherichia coli, and Escherichia coli O157:H7 threonine efflux protein RhtC or b3823 or z5344 or ecs4753 SWALL:RHTC_ECOLI (SWALL:P27846) (206 aa) fasta scores: E(): 3.3e-62, 73.43% id in 207 aa
YP_052259.1	functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway
YP_052260.1	catalyzes the hydrolysis of phosphatidylcholine
YP_052261.1	Similar to Yersinia pestis hypothetical protein ypo3835 or y0395 SWALL:Q8ZAG7 (EMBL:AJ414159) (156 aa) fasta scores: E(): 1.4e-35, 63.39% id in 153 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yigi or b3820 or c4741 or sf3898 SWALL:YIGI_ECOLI (SWALL:P27845) (155 aa) fasta scores: E(): 1.6e-35, 64.9% id in 151 aa
YP_052262.1	Similar to Yersinia pestis  membrane protein ypo3836 SWALL:Q8ZAG6 (EMBL:AJ414159) (296 aa) fasta scores: E(): 1.9e-90, 76.68% id in 296 aa, and to Escherichia coli protein RarD or b3819 SWALL:RARD_ECOLI (SWALL:P27844) (296 aa) fasta scores: E(): 5e-85, 70.94% id in 296 aa
YP_052263.1	Similar to Escherichia coli AbrB protein AbrB or b0715 SWALL:ABRB_ECOLI (SWALL:P75747) (348 aa) fasta scores: E(): 4.8e-66, 51.91% id in 339 aa, and to Salmonella typhi  membrane protein sty0772 SWALL:Q8Z8D1 (EMBL:AL627268) (348 aa) fasta scores: E(): 2.1e-67, 53.39% id in 339 aa
YP_052264.1	responsible for the influx of magnesium ions
YP_052265.1	Similar to Staphylococcus epidermidis conserved hypothetical protein se2383 SWALL:AAO06026 (EMBL:AE016752) (247 aa) fasta scores: E(): 4.6e-48, 50.21% id in 237 aa, and to Pasteurella multocida hypothetical protein Pm0097 SWALL:Q9CPE7 (EMBL:AE006045) (247 aa) fasta scores: E(): 7.6e-57, 58.43% id in 243 aa
YP_052266.1	unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.
YP_052267.1	YigB; member of the haloacid dehalogenase (HAD)-like hydrolases superfamily of protein; unknown function
YP_052268.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_052269.1	Similar to Yersinia pestis hypothetical protein ypo3844 or y0386 SWALL:Q8ZAF8 (EMBL:AJ414159) (234 aa) fasta scores: E(): 1.8e-68, 73.93% id in 234 aa, and to Salmonella typhi hypothetical protein Sty3611 SWALL:Q8Z3A7 (EMBL:AL627279) (235 aa) fasta scores: E(): 4.6e-60, 64.68% id in 235 aa
YP_052270.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_052271.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein yifl precursor yifl or b3808.1 or c4729 or z5325 or ecs4737.1 or sf3886 SWALL:AAN83162 (EMBL:M87049) (67 aa) fasta scores: E(): 0.00042, 45.09% id in 51 aa, and to Salmonella typhimurium, and Salmonella typhi hypothetical lipoprotein yifl precursor yifl or stm3946 or stmd1.100 or sty3613 or t3351 SWALL:YIFL_SALTY (SWALL:Q9L6P7) (67 aa) fasta scores: E(): 0.00042, 43.13% id in 51 aa
YP_052272.1	defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly
YP_052273.1	Similar to Bradyrhizobium japonicum mfs permease blr1017 SWALL:BAC46282 (EMBL:AP005938) (417 aa) fasta scores: E(): 8.2e-38, 34.6% id in 393 aa, and to Pseudomonas aeruginosa similar to metabolite transport protein SWALL:AAN62124 (EMBL:AF440523) (408 aa) fasta scores: E(): 1e-35, 34.2% id in 383 aa
YP_052274.1	catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP
YP_052275.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_052276.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_052277.1	Similar to Escherichia coli  uroporphyrin-III C-methyltransferase HemX or b3803 SWALL:HEMX_ECOLI (SWALL:P09127) (393 aa) fasta scores: E(): 5.1e-71, 60.54% id in 370 aa
YP_052278.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri HemY protein HemY or b3802 or c4721 or z5316 or ecs4732 or sf3874 SWALL:HEMY_ECOLI (SWALL:P09128) (398 aa) fasta scores: E(): 1.3e-109, 73.02% id in 393 aa, and to Salmonella typhi porphyrin biosynthetic protein sty3624 SWALL:Q8Z398 (EMBL:AL627279) (399 aa) fasta scores: E(): 7e-108, 71.24% id in 393 aa
YP_052279.1	Similar to Sulfolobus solfataricus thermostable carboxypeptidase 1 CpsA1 or CpsA-1 or CpsA or sso1355 SWALL:CBP1_SULSO (SWALL:P80092) (393 aa) fasta scores: E(): 6.5e-42, 36.93% id in 379 aa, and to Zymomonas mobilis amino acid amido hydrolase SWALL:Q9FDK6 (EMBL:AF212041) (380 aa) fasta scores: E(): 2.3e-67, 46.93% id in 375 aa
YP_052280.1	Similar to Bacillus subtilis probable amino-acid ABC transporter ATP-binding protein YxeO or lp9G SWALL:YXEO_BACSU (SWALL:P54954) (249 aa) fasta scores: E(): 1.6e-51, 63.2% id in 250 aa, and to Clostridium acetobutylicum ABC-type polar amino acid transport system, ATPase component cac0879 SWALL:Q97KN8 (EMBL:AE007603) (243 aa) fasta scores: E(): 4.7e-45, 57.43% id in 242 aa
YP_052281.1	Similar to Vibrio harveyi probable amino-acid ABC transporter permease protein PatM SWALL:PATM_VIBHA (SWALL:P52625) (223 aa) fasta scores: E(): 2.3e-36, 47.98% id in 223 aa, and to Bacillus subtilis probable amino-acid ABC transporter permease protein yxen or lp9F SWALL:YXEN_BACSU (SWALL:P54953) (224 aa) fasta scores: E(): 1.2e-45, 57.07% id in 219 aa
YP_052282.1	Similar to Vibrio harveyi  amino-acid ABC transporter binding protein PatH precursor PatH SWALL:PATH_VIBHA (SWALL:P52626) (248 aa) fasta scores: E(): 1.6e-27, 39.6% id in 255 aa, and to Bacillus subtilis probable amino-acid ABC transporter binding protein yxem precursor yxem or lp9E SWALL:YXEM_BACSU (SWALL:P54952) (264 aa) fasta scores: E(): 4.7e-48, 53.28% id in 259 aa
YP_052283.1	Similar to Bacillus subtilis hypothetical protein yxel or lp9D SWALL:YXEL_BACSU (SWALL:P54951) (165 aa) fasta scores: E(): 1.2e-30, 49.69% id in 165 aa, and to Listeria innocua hypothetical protein Lin2444 lin2444 SWALL:Q928T8 (EMBL:AL596172) (178 aa) fasta scores: E(): 1.6e-20, 38.18% id in 165 aa
YP_052284.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_052285.1	Similar to Pseudomonas syringae phytase PhyM SWALL:AAN77879 (EMBL:AY156083) (428 aa) fasta scores: E(): 3.4e-77, 48.73% id in 433 aa, and to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 1.5e-31, 31.08% id in 415 aa
YP_052286.1	uncharacterized member of the amino acid-polyamine-organocation (APC) superfamily of amino acid transporters; unknown function
YP_052287.1	Similar to Escherichia coli probable UDP-N-acetyl-D-mannosaminuronic acid transferase WecG or RffM or b3794 SWALL:WECG_ECOLI (SWALL:P27836) (246 aa) fasta scores: E(): 9.8e-68, 72.76% id in 246 aa
YP_052288.1	enterobacterial common antigen polymerase
YP_052289.1	catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis
YP_052290.1	Similar to Escherichia coli, and Shigella flexneri wzxe protein WzxE or Wzx or b3792 or sf3866 SWALL:WZXE_ECOLI (SWALL:P27834) (416 aa) fasta scores: E(): 6.6e-111, 72.11% id in 416 aa, and to Yersinia pestis lipopolysaccharide biosynthesis protein WzxE or ypo3858 or y0370 SWALL:Q8ZAE9 (EMBL:AJ414159) (418 aa) fasta scores: E(): 4e-119, 76.92% id in 416 aa
YP_052291.1	catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis
YP_052292.1	Similar to Escherichia coli lipopolysaccharide biosynthesis protein RffC or WecD or b3790 SWALL:RFFC_ECOLI (SWALL:P27832) (181 aa) fasta scores: E(): 1e-33, 55.78% id in 190 aa
YP_052293.1	Similar to Escherichia coli dTDP-glucose 4,6-dehydratase RffG or b3788 SWALL:RFFG_ECOLI (SWALL:P27830) (355 aa) fasta scores: E(): 6.4e-119, 83% id in 353 aa
YP_052294.1	catalyzes the oxidation of UDP-N-acetyl-D-mannosamine to UDP-N-acetylmannosaminuronic acid
YP_052295.1	Similar to Escherichia coli UDP-N-acetylglucosamine 2-epimerase WecB or RffE or NfrC or b3786 SWALL:WECB_ECOLI (SWALL:P27828) (376 aa) fasta scores: E(): 8.5e-116, 77.21% id in 373 aa
YP_052296.1	Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
YP_052297.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase WecA or Rfe or b3784 or c4704 or sf3858 SWALL:WECA_ECOLI (SWALL:P24235) (367 aa) fasta scores: E(): 7.4e-112, 75.97% id in 358 aa
YP_052298.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_052299.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1e-36, 88.78% id in 107 aa
YP_052300.1	enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation
YP_052301.1	catalyzes the conversion of guanosine 5'-triphosphate,3'-diphosphate (pppGpp) to guanosine 5'-diphosphate,3'-diphosphate (ppGpp); pppGpp and ppGpp control the stringent response during amino acid starvation
YP_052302.1	single-stranded DNA-dependent ATPase; initiates unwinding at a nick in the DNA; involved in DNA replication
YP_052303.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 peptidyl-prolyl cis-trans isomerase C PpiC or ParvA or b3775 or c4697 or z5286 or ecs4709 SWALL:PPIC_ECOLI (SWALL:P39159) (92 aa) fasta scores: E(): 2e-25, 71.73% id in 92 aa
YP_052304.1	proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein
YP_052305.1	Similar to Escherichia coli sodium/proline symporter PutP or b1015 SWALL:PUTP_ECOLI (SWALL:P07117) (502 aa) fasta scores: E(): 3.3e-158, 80.93% id in 493 aa
YP_052306.1	Similar to Rhizobium loti probable transcriptional regulator mlr0244 SWALL:Q98N89 (EMBL:AP002994) (308 aa) fasta scores: E(): 2.1e-52, 49.83% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1146 or rs05458 SWALL:Q8XQS3 (EMBL:AL646083) (298 aa) fasta scores: E(): 2e-47, 47.49% id in 299 aa
YP_052307.1	Similar to Streptomyces coelicolor hypothetical protein sco0965 or scm11.20C SWALL:Q9RIU2 (EMBL:AL939107) (219 aa) fasta scores: E(): 1.8e-24, 45.21% id in 188 aa, and to Rhizobium loti hypothetical protein Mll0243 SWALL:Q98N90 (EMBL:AP002994) (231 aa) fasta scores: E(): 4.1e-19, 40% id in 195 aa
YP_052308.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_052309.1	participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate
YP_052310.1	Similar to Shewanella oneidensis conserved hypothetical protein so0112 SWALL:AAN53199 (EMBL:AE015462) (207 aa) fasta scores: E(): 2.1e-05, 28.85% id in 201 aa, and to Xanthomonas axonopodis hypothetical protein Xac3205 SWALL:Q8PHP4 (EMBL:AE011966) (389 aa) fasta scores: E(): 6.4e-05, 26.4% id in 231 aa
YP_052311.1	Similar to Xanthomonas campestris hypothetical protein Xcc1550 SWALL:Q8PAD5 (EMBL:AE012256) (228 aa) fasta scores: E(): 2.8e-11, 27.6% id in 221 aa, and to Shewanella oneidensis conserved hypothetical protein so1579 SWALL:AAN54636 (EMBL:AE015603) (235 aa) fasta scores: E(): 3.3e-10, 24.65% id in 215 aa
YP_052312.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_052313.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_052314.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_052315.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri acetolactate synthase isozyme II small subunit IlvM or b3769 or c4691 or sf3844 SWALL:ILVM_ECOLI (SWALL:P13048) (86 aa) fasta scores: E(): 1.8e-18, 63.52% id in 85 aa
YP_052316.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_052317.1	Similar to Haemophilus influenzae competence protein ComM or hi1117 SWALL:COMM_HAEIN (SWALL:P45049) (509 aa) fasta scores: E(): 2.2e-110, 64.22% id in 506 aa, and to Yersinia pestis  magnesium chelatase family protein ypo3902 SWALL:Q8ZAA9 (EMBL:AJ414159) (507 aa) fasta scores: E(): 5e-130, 73.96% id in 507 aa
YP_052318.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein yife or b3764 or c4686 or z5276 or ecs4699 or sf3840 SWALL:AAN45278 (EMBL:M87049) (112 aa) fasta scores: E(): 2.1e-36, 79.46% id in 112 aa, and to Yersinia pestis hypothetical protein Ypo3903 SWALL:Q8ZAA8 (EMBL:AJ414159) (112 aa) fasta scores: E(): 7.3e-36, 81.25% id in 112 aa
YP_052319.1	Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon
YP_052320.1	membrane component of a  sugar ABC transporter system
YP_052321.1	Similar to Yersinia pestis  sugar transport system permease ypo3906 or y0330 SWALL:AAM83921 (EMBL:AJ414159) (339 aa) fasta scores: E(): 1.4e-95, 83.89% id in 329 aa, and to Escherichia coli hypothetical ABC transporter permease protein ytft or b4230 SWALL:YTFT_ECOLI (SWALL:P39328) (341 aa) fasta scores: E(): 9.1e-79, 71.11% id in 322 aa
YP_052322.1	Similar to Yersinia pestis  sugar transport system ATP-binding protein ypo3907 or y0329 SWALL:Q8ZAA4 (EMBL:AJ414159) (496 aa) fasta scores: E(): 1.2e-141, 79.51% id in 493 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein ytfr or b4228/b4429 or z5839 or ecs5206 SWALL:YTFR_ECOLI (SWALL:P39326) (500 aa) fasta scores: E(): 1.1e-118, 67.82% id in 491 aa
YP_052323.1	Similar to Escherichia coli ABC transporter periplasmic binding protein ytfq precursor ytfq or b4227 SWALL:YTFQ_ECOLI (SWALL:P39325) (318 aa) fasta scores: E(): 9.2e-84, 75.78% id in 318 aa, and to Yersinia pestis periplasmic protein ypo3908 or y0328 SWALL:AAM83919 (EMBL:AJ414159) (318 aa) fasta scores: E(): 9.3e-98, 88.36% id in 318 aa
YP_052324.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_052325.1	involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space
YP_052326.1	catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs
YP_052327.1	Similar to Yersinia pestis  membrane protein ypo3912 or y0323 SWALL:AAM83914 (EMBL:AJ414159) (135 aa) fasta scores: E(): 3e-29, 63.86% id in 119 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yijd or b3964 or c4927 or z5525 or ecs4895 SWALL:YIJD_ECOLI (SWALL:P27308) (119 aa) fasta scores: E(): 4.3e-29, 65.48% id in 113 aa
YP_052328.1	negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis
YP_052329.1	catalyzes the conversion of NADPH to NADH
YP_052330.1	Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA
YP_052331.1	MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor
YP_052332.1	Similar to Comamonas acidovorans phosphodiesterase PdeA SWALL:Q8GMW5 (EMBL:AF548455) (263 aa) fasta scores: E(): 2.1e-33, 40.15% id in 254 aa, and to Rhizobium loti 3',5'-cyclic-nucleotide phosphodiesterase, cpda mll3631 SWALL:Q98FT1 (EMBL:AP003002) (305 aa) fasta scores: E(): 3.1e-48, 52.19% id in 251 aa
YP_052333.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribose operon repressor RbsR or b3753 or c4681 or z5254 or ecs4695 or sf3836 SWALL:RBSR_ECOLI (SWALL:P25551) (329 aa) fasta scores: E(): 1.9e-18, 30.63% id in 333 aa, and to Rhizobium meliloti  transcriptional regulator protein rb0352 or smb20366 SWALL:Q92WI7 (EMBL:AL603643) (334 aa) fasta scores: E(): 8.1e-42, 43.84% id in 317 aa
YP_052334.1	Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4571 or agr_l_601 SWALL:Q8U783 (EMBL:AE009385) (288 aa) fasta scores: E(): 3.3e-27, 34.36% id in 259 aa, and to Yersinia pestis  binding-protein-dependent transport system membrane protein ypo2030 or y2280 SWALL:AAM85839 (EMBL:AJ414151) (278 aa) fasta scores: E(): 4.1e-24, 30.62% id in 271 aa
YP_052335.1	Similar to Bradyrhizobium japonicum ABC transporter permease protein blr3545 SWALL:BAC48810 (EMBL:AP005948) (293 aa) fasta scores: E(): 1.5e-10, 26.61% id in 278 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4570 or agr_l_602 SWALL:Q8U784 (EMBL:AE009385) (285 aa) fasta scores: E(): 2e-10, 24.72% id in 275 aa
YP_052336.1	Similar to Escherichia coli, and Escherichia coli O157:H7 maltose-binding periplasmic protein precursor MalE or b4034 or z5632 or ecs5017 SWALL:MALE_ECOLI (SWALL:P02928) (396 aa) fasta scores: E(): 0.00014, 26.87% id in 387 aa, and to Yersinia pestis  ABC transporter periplasmic binding protein y2281 SWALL:AAM85840 (EMBL:AE013831) (360 aa) fasta scores: E(): 6.8e-13, 26.11% id in 337 aa
YP_052337.1	Similar to Escherichia coli putrescine transport ATP-binding protein PotG or b0855 SWALL:POTG_ECOLI (SWALL:P31134) (377 aa) fasta scores: E(): 1.2e-43, 41.97% id in 355 aa, and to Bradyrhizobium japonicum ABC transporter ATP-binding protein bll7196 SWALL:BAC52461 (EMBL:AP005961) (365 aa) fasta scores: E(): 1e-45, 44.02% id in 318 aa, and to Rhizobium meliloti  ABC transporter, ATP-binding protein ra1191 or sma2207 SWALL:Q92XQ3 (EMBL:AE007304) (361 aa) fasta scores: E(): 1.5e-45, 43.42% id in 350 aa
YP_052338.1	multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways
YP_052339.1	catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine
YP_052340.1	when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis
YP_052341.1	Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 1.2e-25, 37.5% id in 256 aa, and to Brucella melitensis iron(III) dicitrate transport ATP-binding protein bmeii0537 SWALL:Q8YCJ1 (EMBL:AE009689) (264 aa) fasta scores: E(): 6e-28, 42.21% id in 244 aa
YP_052342.1	Similar to Rhizobium loti iron(III) ABC transporter, periplasmic-binding protein mlr8228 SWALL:Q983Q2 (EMBL:AP003013) (315 aa) fasta scores: E(): 8e-77, 62.38% id in 319 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2913 pa2913 SWALL:Q9HZT4 (EMBL:AE004717) (323 aa) fasta scores: E(): 1.3e-50, 45.57% id in 316 aa
YP_052343.1	Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.1e-33, 38.8% id in 317 aa, and to Rhizobium loti ABC transporter, permease protein mlr8229 SWALL:Q983Q1 (EMBL:AP003013) (349 aa) fasta scores: E(): 1.3e-61, 54.4% id in 329 aa
YP_052344.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_052345.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_052346.1	negatively controls the transcription initiation of genes such as deoCABD, udp, and cdd encoding catabolizing enzymes and nupC, nupG, and tsx encoding transporting and pore-forming proteins
YP_052347.1	Similar to Escherichia coli cell division protein FtsN or MsgA or b3933 SWALL:FTSN_ECOLI (SWALL:P29131) (319 aa) fasta scores: E(): 9.1e-25, 50.63% id in 314 aa
YP_052348.1	heat shock protein involved in degradation of misfolded proteins
YP_052349.1	heat shock protein involved in degradation of misfolded proteins
YP_052350.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_052351.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_052352.1	Similar to Yersinia pestis hypothetical protein ypo0093 or y0045 SWALL:AAM83640 (EMBL:AJ414141) (79 aa) fasta scores: E(): 1.4e-20, 88.6% id in 79 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yiiu or b3928 or c4880 or z5473 or ecs4853 or sf4006 SWALL:YIIU_ECOLI (SWALL:P32164) (81 aa) fasta scores: E(): 4.8e-17, 78.48% id in 79 aa
YP_052353.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycerol uptake facilitator protein GlpF or b3927 or c4879 or z5472 or ecs4852 SWALL:GLPF_ECOLI (SWALL:P11244) (281 aa) fasta scores: E(): 4.4e-90, 80.71% id in 280 aa
YP_052354.1	Similar to Escherichia coli, and Escherichia coli O157:H7 glycerol kinase GlpK or b3926 or z5471 or ecs4851 SWALL:GLPK_ECOLI (SWALL:P08859) (501 aa) fasta scores: E(): 6.5e-179, 85.97% id in 499 aa
YP_052355.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_052356.1	Similar to Escherichia coli ferredoxin--NADP reductase Fpr or MvrA or b3924 SWALL:FENR_ECOLI (SWALL:P28861) (247 aa) fasta scores: E(): 1e-75, 76.11% id in 247 aa
YP_052357.1	Similar to Yersinia pestis conserved membrane protein ypo0087 SWALL:Q8ZJK7 (EMBL:AJ414141) (144 aa) fasta scores: E(): 5.8e-43, 66.66% id in 138 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yiir or stm4083 or sty3787 SWALL:Q8XFX4 (EMBL:AE008890) (142 aa) fasta scores: E(): 8.1e-38, 60.43% id in 139 aa
YP_052358.1	Similar to Yersinia pestis  exported protein ypo0086 SWALL:Q8ZJK8 (EMBL:AJ414141) (211 aa) fasta scores: E(): 5.1e-34, 59.39% id in 197 aa, and to Escherichia coli hypothetical protein yiiq precursor yiiq or b3920 SWALL:YIIQ_ECOLI (SWALL:P32160) (199 aa) fasta scores: E(): 1e-33, 56.84% id in 190 aa
YP_052359.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_052360.1	catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis
YP_052361.1	Similar to Yersinia pestis  carbon-nitrogen hydrolase ypo0938 or y3324 SWALL:Q8ZHG1 (EMBL:AJ414145) (294 aa) fasta scores: E(): 2.8e-116, 93.87% id in 294 aa, and to Pseudomonas aeruginosa probable hydratase pa0293 SWALL:Q9I6J8 (EMBL:AE004467) (292 aa) fasta scores: E(): 4.5e-79, 65.05% id in 289 aa
YP_052362.1	Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 4.3e-56, 78.48% id in 172 aa, and to Yersinia pestis hypothetical protein ypo3708 ypo3708 or y0036 SWALL:AAM83631 (EMBL:AJ414158) (172 aa) fasta scores: E(): 9.6e-60, 81.39% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA3428 (99.419% identity in 172aa overlap) and ECA2866 (94.767% identity in 172aa overlap).
YP_052363.1	Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 3.4e-130, 53.79% id in 606 aa, and to Yersinia pestis  rhs accessory genetic element ypo3606 or y0268 SWALL:AAM83862 (EMBL:AJ414158) (800 aa) fasta scores: E(): 2.2e-123, 51.03% id in 629 aa
YP_052364.1	Similar to Photorhabdus luminescens Orf5 orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 5.6e-26, 53.33% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 1.6e-15, 41.54% id in 142 aa
YP_052365.1	Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa
YP_052367.1	Similar to Yersinia pestis hypothetical y0261 SWALL:AAM83855 (EMBL:AE013626) (74 aa) fasta scores: E(): 1.4e-15, 60.81% id in 74 aa, and to Photorhabdus luminescens Orf8 orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 1e-08, 52.17% id in 69 aa
YP_052368.1	Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 2.7e-06, 33.63% id in 110 aa, and to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 1.5e-10, 34.42% id in 122 aa
YP_052369.1	Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 1e-213, 73.54% id in 926 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.8e-13, 27.62% id in 438 aa. Also similar to ECA3390, (79.939% id), ECA3400 (84.394% id), ECA3407 (87.010% id), ECA3416 (87.010% id), and to ECA4291 (100.000% id).
YP_052370.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_052376.1	Similar to Yersinia pestis hypothetical y0261 SWALL:AAM83855 (EMBL:AE013626) (74 aa) fasta scores: E(): 1.4e-15, 60.81% id in 74 aa, and to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 1e-08, 52.17% id in 69 aa
YP_052377.1	Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 2.7e-06, 33.63% id in 110 aa, and to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 1.5e-10, 34.42% id in 122 aa
YP_052378.1	Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 1e-213, 73.54% id in 926 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.8e-13, 27.62% id in 438 aa. Also similar to ECA3390, (79.939% id), ECA3400 (84.394% id), ECA3407 (87.010% id), ECA3416 (87.010% id), and to ECA4282 (100.000% id).
YP_052379.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_052380.1	Similar to the C-terminal region of Bacillus halodurans hypothetical protein Bh2341 SWALL:Q9KAE6 (EMBL:AP001515) (271 aa) fasta scores: E(): 4.2e-21, 51.66% id in 120 aa
YP_052381.1	Similar to Clostridium acetobutylicum hypothetical cf-21 family protein Cac0348 SWALL:Q97M52 (EMBL:AE007549) (164 aa) fasta scores: E(): 0.37, 24.24% id in 165 aa
YP_052382.1	Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 1.4e-10, 60.34% id in 58 aa, and to Photorhabdus luminescens Orf8 SWALL:Q8GDM5 (EMBL:AY144117) (106 aa) fasta scores: E(): 0.0069, 49.05% id in 53 aa
YP_052383.1	Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 3.8e-47, 57.02% id in 242 aa, and to Bacillus subtilis  aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.1e-35, 45.88% id in 231 aa
YP_052384.1	Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 2e-89, 51.46% id in 513 aa, and to Bacillus subtilis  aliphatic sulfonates transport permease protein SsuC ssuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 2.1e-26, 36.82% id in 239 aa
YP_052385.1	Similar to Neisseria meningitidis biopolymer transport ExbD protein ExbD or nma1983 or nmb1728 SWALL:EXBD_NEIMA (SWALL:P95376) (144 aa) fasta scores: E(): 3.9e-13, 38.57% id in 140 aa, and to Pseudomonas aeruginosa ExbD or ExbD1 or pa0199 SWALL:Q9RMT1 (EMBL:AF190125) (133 aa) fasta scores: E(): 1.8e-24, 55.63% id in 133 aa
YP_052386.1	Similar to Neisseria meningitidis biopolymer transport ExbB protein ExbB or nma1984 or nmb1729 SWALL:EXBB_NEIMA (SWALL:P57027) (220 aa) fasta scores: E(): 4.3e-20, 40.3% id in 196 aa, and to Pseudomonas aeruginosa ExbB or ExbB1 or pa0198 SWALL:Q9RMT2 (EMBL:AF190125) (239 aa) fasta scores: E(): 2.1e-44, 58.57% id in 239 aa
YP_052387.1	Similar to Pseudomonas aeruginosa TonB2 protein TonB2 or pa0197 SWALL:Q9RMT3 (EMBL:AF190125) (270 aa) fasta scores: E(): 6.3e-17, 43.79% id in 290 aa, and to Bordetella bronchiseptica TonB SWALL:Q9ZG18 (EMBL:AF087669) (268 aa) fasta scores: E(): 5.5e-09, 33.2% id in 265 aa
YP_052388.1	Similar to Pseudomonas aeruginosa  sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa
YP_052389.1	Similar to Pseudomonas putida SftP SWALL:Q9R9W7 (EMBL:AF126201) (778 aa) fasta scores: E(): 5e-33, 37.71% id in 753 aa, and to Xanthomonas axonopodis TonB-dependent receptor FyuA or xac1143 SWALL:Q8PND0 (EMBL:AE011742) (804 aa) fasta scores: E(): 1.7e-22, 23.65% id in 782 aa
YP_052390.1	Similar to Streptomyces coelicolor hypothetical protein sco1536 or scl2.26C SWALL:Q9L273 (EMBL:AL939109) (822 aa) fasta scores: E(): 4e-150, 48.64% id in 847 aa, and to Bacillus subtilis YetA protein SWALL:O31530 (EMBL:Z99107) (857 aa) fasta scores: E(): 4.1e-50, 34.15% id in 887 aa
YP_052392.1	Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa
YP_052394.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_052395.1	member of cation diffusion facilitator family; CDF; membrane-bound; induced by both zinc and iron, but does not induce resistance to zinc; can transport zinc(II) in a proton-dependent manner; instead this protein induces iron resistance; forms dimers
YP_052396.1	Similar to Erwinia chrysanthemi sugar efflux transporter B SotB SWALL:SOTB_ERWCH (SWALL:Q9S3J9) (395 aa) fasta scores: E(): 4.8e-85, 61.85% id in 388 aa, and to Escherichia coli sugar efflux transporter SotB or b1528 SWALL:SOTB_ECOLI (SWALL:P31122) (396 aa) fasta scores: E(): 1e-82, 61.55% id in 385 aa
YP_052397.1	Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri periplasmic protein cpxp precursor CpxP or b3913/b3914 or c4865 or sf3992 SWALL:CPXP_ECOLI (SWALL:P32158) (166 aa) fasta scores: E(): 6.2e-20, 50% id in 140 aa
YP_052398.1	response regulator in two-component regulatory system with CpxA; part of the envelope stress response system
YP_052399.1	part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors
YP_052400.1	Similar to Pseudomonas aeruginosa hypothetical protein Pa5441 SWALL:Q9HTC5 (EMBL:AE004957) (733 aa) fasta scores: E(): 4.1e-70, 35.82% id in 748 aa, and to Yersinia pestis hypothetical protein ypo0870 or y3254 SWALL:Q8ZHM1 (EMBL:AJ414145) (774 aa) fasta scores: E(): 2.3e-94, 41.84% id in 736 aa
YP_052401.1	Similar to Yersinia pestis hypothetical y3253 SWALL:Q8CKN3 (EMBL:AE013927) (255 aa) fasta scores: E(): 2.6e-44, 48.56% id in 243 aa
YP_052402.1	Similar to Shewanella oneidensis RNA methyltransferase, TrmH family, group 2 so4529 SWALL:AAN57492 (EMBL:AE015885) (154 aa) fasta scores: E(): 1.6e-40, 73.33% id in 150 aa, and to Vibrio vulnificus predicted rRNA methylase vv11251 SWALL:AAO09707 (EMBL:AE016801) (157 aa) fasta scores: E(): 4.8e-36, 67.97% id in 153 aa
YP_052404.1	Similar to Yersinia pestis  membrane protein ypo3791 SWALL:Q8ZAL0 (EMBL:AJ414159) (308 aa) fasta scores: E(): 3.3e-84, 74.49% id in 298 aa, and to Bradyrhizobium japonicum Blr7387 protein blr7387 SWALL:BAC52652 (EMBL:AP005962) (314 aa) fasta scores: E(): 2.2e-23, 31.73% id in 312 aa
YP_052405.1	hydrolyzes diesters during transport at the inner face of the cytoplasmic membrane to glycerol-3-phosphate and alcohol; induced when cells are starved for inorganic phosphate
YP_052406.1	part of the UgpABCE glycerol-3-phosphate uptake system
YP_052407.1	with UgpABC is involved in uptake of glycerol-3-phosphate
YP_052408.1	with UgpEC is involved in the uptake of glycerol-3-phosphate
YP_052409.1	with UgpACE is involved in the uptake of glycerol-3-phosphate
YP_052410.1	Similar to Yersinia pestis hypothetical protein ypo1620 or y1780 SWALL:Q8ZFR8 (EMBL:AJ414149) (137 aa) fasta scores: E(): 5.7e-33, 60.58% id in 137 aa
YP_052411.1	Similar to Yersinia pestis hypothetical protein ypo1619 or y1779 SWALL:AAM85347 (EMBL:AJ414149) (189 aa) fasta scores: E(): 8.4e-51, 70.21% id in 188 aa, and to Escherichia coli O6 hypothetical protein c0078 SWALL:AAN78574 (EMBL:AE016755) (78 aa) fasta scores: E(): 0.00011, 43.42% id in 76 aa
YP_052412.1	Similar to Yersinia pestis orf40 ypo1938 or y2373 SWALL:Q9ZC48 (EMBL:AL031866) (256 aa) fasta scores: E(): 1.7e-68, 72.22% id in 252 aa, and to Escherichia coli hypothetical transcriptional regulator ygbi or b2735 SWALL:YGBI_ECOLI (SWALL:P52598) (265 aa) fasta scores: E(): 4.4e-58, 62.3% id in 252 aa
YP_052414.1	Similar to Escherichia coli hypothetical oxidoreductase ygbj or b2736 SWALL:YGBJ_ECOLI (SWALL:Q46888) (302 aa) fasta scores: E(): 1.3e-71, 73.75% id in 301 aa, and to Pasteurella multocida hypothetical protein Pm1366 SWALL:Q9CL76 (EMBL:AE006174) (301 aa) fasta scores: E(): 3.3e-75, 78.85% id in 298 aa
YP_052415.1	Similar to Escherichia coli O6 hypothetical protein ygbk or c3298 SWALL:AAN81747 (EMBL:AE016765) (420 aa) fasta scores: E(): 2.1e-101, 64.92% id in 422 aa, and to Brucella melitensis hypothetical protein Bmeii1091 SWALL:Q8YB10 (EMBL:AE009741) (436 aa) fasta scores: E(): 8.2e-93, 60.95% id in 420 aa
YP_052416.1	Similar to Escherichia coli hypothetical aldolase class II protein ygbl or b2738 SWALL:YGBL_ECOLI (SWALL:Q46890) (212 aa) fasta scores: E(): 3.3e-60, 74.38% id in 203 aa, and to Salmonella typhimurium, and Salmonella typhi  fuculose phosphate aldolase ygbl or stm2916 or sty3041 SWALL:Q8XER3 (EMBL:AE008833) (212 aa) fasta scores: E(): 3.9e-60, 73.43% id in 207 aa
YP_052417.1	Similar to Escherichia coli hydroxypyruvate isomerase Hyi or Gip or b0508 SWALL:HYI_ECOLI (SWALL:P30147) (258 aa) fasta scores: E(): 9.4e-35, 39.29% id in 257 aa, and to Escherichia coli O6 hypothetical protein ygbm or c3300 SWALL:Q8FEK7 (EMBL:AE016765) (258 aa) fasta scores: E(): 2.3e-66, 63.03% id in 257 aa
YP_052418.1	member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function
YP_052419.1	Similar to Ralstonia solanacearum  methyl-accepting chemotaxis I CheD4 or rsc3412 or rs01721 SWALL:Q8XTY3 (EMBL:AL646075) (515 aa) fasta scores: E(): 1.5e-52, 43.48% id in 522 aa, and to Rahnella aquatilis methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 1.2e-51, 37.39% id in 567 aa
YP_052420.1	Similar to Rahnella aquatilis  methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 7.1e-54, 38.01% id in 555 aa, and to Ralstonia solanacearum  methyl-accepting chemotaxis I CheD4 or rsc3412 or rs01721 SWALL:Q8XTY3 (EMBL:AL646075) (515 aa) fasta scores: E(): 1.8e-50, 42.05% id in 516 aa
YP_052421.1	Similar to Escherichia coli methyl-accepting chemotaxis protein I Tsr or CheD or b4355 SWALL:MCP1_ECOLI (SWALL:P02942) (551 aa) fasta scores: E(): 8e-53, 40.14% id in 558 aa, and to Rahnella aquatilis  methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 2.9e-56, 38.35% id in 558 aa
YP_052422.1	Similar to Rahnella aquatilis  methyl-accepting chemotaxis protein I SWALL:Q93ET6 (EMBL:AF338038) (554 aa) fasta scores: E(): 1.1e-57, 39.06% id in 558 aa, and to Ralstonia solanacearum probable methyl-accepting chemotaxis transducer transmembrane protein rsp1363 or rs04782 SWALL:Q8XQC3 (EMBL:AL646084) (543 aa) fasta scores: E(): 1.4e-55, 39.45% id in 550 aa
YP_052423.1	Similar to Pyrococcus abyssi aminotransferase pyrab01920 or pab2227 SWALL:Q9V282 (EMBL:AJ248283) (410 aa) fasta scores: E(): 1.7e-51, 40% id in 395 aa, and to Myxococcus xanthus  aminotransferase protein SWALL:Q8KM38 (EMBL:AJ505751) (406 aa) fasta scores: E(): 5.6e-50, 39.94% id in 388 aa
YP_052424.1	with LivGHMJ and LivGHMK is part of the high-affinity branched-chain amino acid transport system; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_052425.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_052426.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_052427.1	LivHMGF is the membrane component of the LIV-I/LS branched-chain amino acid transporter
YP_052428.1	Similar to Escherichia coli leucine-specific binding protein precursor LivK or b3458 SWALL:LIVK_ECOLI (SWALL:P04816) (369 aa) fasta scores: E(): 9e-104, 75.27% id in 364 aa
YP_052429.1	Similar to Yersinia pestis  acetyltransferase ypo3809 SWALL:Q8ZAJ2 (EMBL:AJ414159) (130 aa) fasta scores: E(): 4.7e-22, 53.48% id in 129 aa, and to Salmonella typhimurium, and Salmonella typhi acetyltransferase yhhk or stm3565 or sty4247 SWALL:Q8XFZ9 (EMBL:AE008864) (127 aa) fasta scores: E(): 1.8e-17, 48.43% id in 128 aa
YP_052430.1	binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters
YP_052431.1	ABC transporter, membrane protein
YP_052432.1	ATP-binding protein of an ATP-binding cassette transporter; when bound to FtsX, FtsEX localizes to the cell division site and plays a role in the assembly or stability of the septal ring under low-salt growth conditions
YP_052433.1	signal recognition protein receptor; functions in the targeting and insertion of membrane proteins
YP_052434.1	catalyzes the methylation of 16S rRNA at position G966
YP_052435.1	Similar to Yersinia pestis  membrane protein ypo3816a or y0414 SWALL:Q8ZAI5 (EMBL:AJ414159) (90 aa) fasta scores: E(): 1.2e-22, 71.59% id in 88 aa, and to Shigella flexneri orf, conserved hypothetical protein yhhl or sf3484 SWALL:AAN44943 (EMBL:AE015356) (90 aa) fasta scores: E(): 5.6e-22, 69.41% id in 85 aa
YP_052436.1	Similar to Escherichia coli O6 hypothetical protein yhhm or c4260 SWALL:AAN82696 (EMBL:AE016768) (119 aa) fasta scores: E(): 2.6e-12, 38.65% id in 119 aa, and to Salmonella typhimurium  inner membrane protein yhhm or stm3574 SWALL:Q8ZLE6 (EMBL:AE008864) (123 aa) fasta scores: E(): 3.2e-12, 39.65% id in 116 aa
YP_052437.1	Similar to Yersinia pestis hypothetical protein ypo3818 or y0412 SWALL:Q8ZAI3 (EMBL:AJ414159) (106 aa) fasta scores: E(): 2.2e-32, 82.07% id in 106 aa, and to Pseudomonas putida conserved hypothetical protein pp4786 SWALL:AAN70355 (EMBL:AE016792) (108 aa) fasta scores: E(): 3.6e-16, 46.15% id in 104 aa
YP_052438.1	Similar to Yersinia pestis  membrane protein ypo3819 or y0411 SWALL:Q8ZAI2 (EMBL:AJ414159) (208 aa) fasta scores: E(): 7e-55, 66.98% id in 209 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yhhn or stm3575 or sty4236 SWALL:Q8XH18 (EMBL:AE008864) (208 aa) fasta scores: E(): 5.2e-51, 63.63% id in 209 aa
YP_052439.1	P-type ATPase involved in the export of lead, cadmium, zinc and mercury
YP_052440.1	TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs
YP_052441.1	Similar to Yersinia pestis  membrane protein ypo3822 SWALL:Q8ZAH9 (EMBL:AJ414159) (222 aa) fasta scores: E(): 4.1e-68, 77.56% id in 214 aa, and to Shigella flexneri orf, conserved hypothetical protein yhhq or sf3489 SWALL:AAN44948 (EMBL:AE015357) (221 aa) fasta scores: E(): 1.2e-65, 75.47% id in 212 aa
YP_052442.1	Similar to Escherichia coli, and Shigella flexneri dcrb protein precursor DcrB or b3472 or sf3490 SWALL:DCRB_ECOLI (SWALL:P37620) (185 aa) fasta scores: E(): 2.8e-37, 61.9% id in 189 aa, and to Salmonella typhimurium, and Salmonella typhi  inner membrane lipoprotein stm3580 or sty4231 SWALL:Q8XFQ6 (EMBL:AE008865) (185 aa) fasta scores: E(): 7.2e-38, 63.83% id in 188 aa
YP_052443.1	No significant database matches. Strongly similar to ECA2106 (88.084% id) and ECA4431 (87.783% id) and
YP_052444.1	Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 8.6e-29, 41.35% id in 237 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 3.6e-27, 42.92% id in 226 aa. Also similar to ECA2107 (77.637% id), ECA2108 (75.949% id), ECA2109 (87.234% id) and ECA4430 (75.527% id).
YP_052445.1	Similar to Escherichia coli hypothetical protein yhhs or b3473 SWALL:YHHS_ECOLI (SWALL:P37621) (419 aa) fasta scores: E(): 3.3e-102, 70.88% id in 395 aa, and to Pseudomonas putida membrane protein,  pp4492 SWALL:AAN70067 (EMBL:AE016790) (400 aa) fasta scores: E(): 1.4e-70, 52.68% id in 391 aa
YP_052446.1	Similar to Yersinia pestis  membrane protein ypo3985 or y3844 SWALL:Q8ZA35 (EMBL:AJ414160) (360 aa) fasta scores: E(): 1.1e-91, 72.37% id in 333 aa, and to Erwinia chrysanthemi hypothetical 36.0 kDa protein in kdgk 5'region SWALL:YHJD_ERWCH (SWALL:P45417) (328 aa) fasta scores: E(): 2.8e-88, 70.65% id in 334 aa
YP_052447.1	Similar to Erwinia chrysanthemi 2-dehydro-3-deoxygluconokinase KdgK SWALL:KDGK_ERWCH (SWALL:P45416) (310 aa) fasta scores: E(): 1.4e-100, 82.25% id in 310 aa
YP_052448.1	Similar to Yersinia pestis  insulinase family protease ypo3991 or y3837 SWALL:AAM87382 (EMBL:AJ414160) (499 aa) fasta scores: E(): 1.5e-117, 63.56% id in 494 aa, and to Escherichia coli protein yhjj precursor yhjj or b3527 SWALL:YHJJ_ECOLI (SWALL:P37648) (498 aa) fasta scores: E(): 1.7e-106, 55.51% id in 499 aa
YP_052449.1	involved in the transport of C4-dicarboxylates across the membrane
YP_052450.1	Similar to Yersinia pestis  membrane protein ypo3996 SWALL:Q8ZA24 (EMBL:AJ414160) (671 aa) fasta scores: E(): 4.1e-57, 47.29% id in 406 aa, and to Escherichia coli O6 protein yhjk yhjk or c4341 SWALL:AAN82777 (EMBL:AE016768) (662 aa) fasta scores: E(): 3.8e-47, 41.35% id in 399 aa
YP_052451.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yhju or stm3624 or sty4176 or bcsG SWALL:Q8XFY5 (EMBL:AE008867) (559 aa) fasta scores: E(): 5.6e-96, 62.61% id in 559 aa, and to Escherichia coli O6 hypothetical protein yhju or c4350 SWALL:AAN82786 (EMBL:AE016768) (559 aa) fasta scores: E(): 1.3e-92, 61.41% id in 552 aa
YP_052452.1	Similar to Salmonella typhimurium, and Salmonella typhi  inner membrane protein yhjt or stm3623 or sty4177 or bcsF SWALL:Q8XGR3 (EMBL:AE008867) (63 aa) fasta scores: E(): 0.0021, 40% id in 60 aa, and to Shigella flexneri orf, conserved hypothetical protein yhjt or sf3569 SWALL:AAN45020 (EMBL:AE015365) (63 aa) fasta scores: E(): 0.0065, 34.42% id in 61 aa
YP_052453.1	Similar to Salmonella typhi hypothetical protein Sty4178 SWALL:Q8Z293 (EMBL:AL627281) (523 aa) fasta scores: E(): 3.7e-67, 44.09% id in 381 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 1.6e-66, 44.97% id in 378 aa
YP_052454.1	Similar to the N-terminal regions of Salmonella typhimurium  cytoplasmic protein yhjs or stm3622 or bcsE SWALL:Q8ZLB5 (EMBL:AE008867) (523 aa) fasta scores: E(): 2.4e-06, 53.84% id in 52 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 9.7e-05, 47.05% id in 51 aa
YP_052455.1	Similar to Salmonella typhimurium, and Salmonella typhi yhjr protein yhjr or stm3621 or sty4179 SWALL:Q93IN4 (EMBL:AJ315770) (67 aa) fasta scores: E(): 4.9e-06, 43.86% id in 57 aa, and to Escherichia coli hypothetical protein yhjr or b3535 SWALL:YHJR_ECOLI (SWALL:P37656) (62 aa) fasta scores: E(): 0.00042, 46.34% id in 41 aa
YP_052456.1	Similar to Salmonella typhi hypothetical protein yhjq or sty4180 SWALL:Q8Z292 (EMBL:AL627281) (250 aa) fasta scores: E(): 7.1e-50, 51.22% id in 246 aa, and to Escherichia coli O6 hypothetical protein yhjq or c4346 SWALL:AAN82782 (EMBL:AE016768) (250 aa) fasta scores: E(): 4.3e-49, 51.04% id in 239 aa
YP_052457.1	binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP)
YP_052458.1	catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans
YP_052459.2	cellulose is produced by the multicellular morphotypes of E. coli and Salmonella typhimurium; the cellulose biosynthesis genes bcsA, bcsB, bcsZ and bcsC are constitutively transcribed, however, cellulose synthesis is dependent on the expression of adrA
YP_052460.1	Similar to Pseudomonas putida transcriptional regulator, AraC family pp4508 SWALL:AAN70082 (EMBL:AE016790) (353 aa) fasta scores: E(): 2e-22, 29.16% id in 336 aa, and to Pseudomonas alcaligenes virulence regulating homolog SWALL:Q9ZFW7 (EMBL:AF092918) (346 aa) fasta scores: E(): 1.1e-21, 28.24% id in 347 aa
YP_052461.1	Similar to Rhizobium loti hypothetical protein Mlr6716 SWALL:Q988J5 (EMBL:AP003009) (335 aa) fasta scores: E(): 1.8e-46, 40.72% id in 329 aa, and to Agrobacterium tumefaciens hypothetical protein atu5252 or agr_pat_360 SWALL:Q8UK71 (EMBL:AE008947) (355 aa) fasta scores: E(): 9.2e-44, 41.52% id in 301 aa
YP_052462.1	Similar to Xanthomonas campestris ethanolamin permease EutP or xcc2259 SWALL:Q8P8I2 (EMBL:AE012333) (454 aa) fasta scores: E(): 8.6e-135, 76.99% id in 439 aa, and to Burkholderia pseudomallei permease lpw119 SWALL:Q93TX8 (EMBL:AF312940) (469 aa) fasta scores: E(): 9.3e-122, 71.81% id in 440 aa
YP_052463.1	Similar to Rhizobium meliloti  aminotransferase ra0973 or sma1761 SWALL:Q92YB1 (EMBL:AE007283) (438 aa) fasta scores: E(): 1.2e-86, 51.61% id in 434 aa, and to Agrobacterium tumefaciens pyridoxal phosphate aminotransferase atu5251 or agr_pat_358 SWALL:Q8UK72 (EMBL:AE008947) (464 aa) fasta scores: E(): 6.4e-78, 47.85% id in 443 aa
YP_052464.1	Similar to Escherichia coli gamma-glutamyltranspeptidase precursor Ggt or b3447 SWALL:GGT_ECOLI (SWALL:P18956) (580 aa) fasta scores: E(): 2.3e-93, 46.93% id in 571 aa, and to Pseudomonas sp. gamma-glutamyltranspeptidase precursor Ggt SWALL:GGT_PSESP (SWALL:P36267) (575 aa) fasta scores: E(): 1.2e-114, 56.17% id in 591 aa
YP_052465.1	Similar to Escherichia coli hypothetical transport protein yjjl or b4356 SWALL:YJJL_ECOLI (SWALL:P39398) (453 aa) fasta scores: E(): 4.2e-172, 91.17% id in 453 aa, and to Bacillus subtilis hexuronate transporter ExuT SWALL:EXUT_BACSU (SWALL:O34456) (422 aa) fasta scores: E(): 1e-42, 30.56% id in 409 aa
YP_052466.1	Similar to Shigella flexneri yjjm gene product yjjm or sf4388 SWALL:AAN45804 (EMBL:AE015445) (304 aa) fasta scores: E(): 2.8e-109, 88.81% id in 304 aa, and to Escherichia coli hypothetical protein yjjm or b4357 SWALL:YJJM_ECOLI (SWALL:P39399) (268 aa) fasta scores: E(): 6.2e-95, 88.06% id in 268 aa
YP_052467.1	Similar to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yjjn or b4358 SWALL:YJJN_ECOLI (SWALL:P39400) (337 aa) fasta scores: E(): 2.4e-105, 85.16% id in 337 aa, and to Salmonella typhimurium  zinc-binding dehydrogenase stm3082 SWALL:Q8ZM59 (EMBL:AE008841) (338 aa) fasta scores: E(): 6.5e-63, 53.84% id in 338 aa
YP_052468.1	catalyzes the formation of D-tagaturonate from D-altronate
YP_052469.1	Similar to Escherichia coli probable amino acid metabolite efflux pump EamA or b1533 SWALL:EAMA_ECOLI (SWALL:P31125) (299 aa) fasta scores: E(): 9.6e-64, 60.66% id in 300 aa, and to Salmonella typhimurium probable amino acid metabolite efflux pump EamA or stm1517 SWALL:EAMA_SALTY (SWALL:Q56072) (299 aa) fasta scores: E(): 1.6e-65, 63.69% id in 303 aa
YP_052470.1	Similar to Escherichia coli O6 hypothetical protein c4013 SWALL:AAN82453 (EMBL:AE016767) (348 aa) fasta scores: E(): 4.5e-22, 30.65% id in 323 aa
YP_052471.1	transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis
YP_052472.1	Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 1.1e-93, 53.94% id in 482 aa, and to Bacillus subtilis beta-glucosidase BglH or n17D SWALL:BGL1_BACSU (SWALL:P40740) (469 aa) fasta scores: E(): 5e-106, 57.88% id in 482 aa. Also similar to ECA1871 (ArbB) (54.149% id), ECA0662 (51.837% id), ECA4432 (49.899% id), ECA2166 (49.689% id), ECA4407 (31.440% id), ECA0859 (38.277% id), ECA1451 (40.600% id) and to ECA3646 (28.630% id)
YP_052473.1	Similar to Erwinia chrysanthemi PTS system, beta-glucoside-specific IIabc component ArbF SWALL:PTBA_ERWCH (SWALL:P26207) (631 aa) fasta scores: E(): 6.6e-81, 37.57% id in 636 aa, and to Escherichia coli PTS system, beta-glucoside-specific IIabc component BglF or BglC or BglS or b3722 SWALL:PTBA_ECOLI (SWALL:P08722) (625 aa) fasta scores: E(): 9.4e-80, 38.6% id in 632 aa
YP_052474.1	Similar to Erwinia chrysanthemi beta-glucoside operon antiterminator ArbG SWALL:ARBG_ERWCH (SWALL:P26211) (283 aa) fasta scores: E(): 2.8e-45, 45.98% id in 274 aa, and to Bacillus subtilis transcription antiterminator LicT or n15A SWALL:LICT_BACSU (SWALL:P39805) (277 aa) fasta scores: E(): 2e-48, 46.54% id in 275 aa, and to Escherichia coli cryptic beta-glucoside bgl operon antiterminator BglG or BglC or b3723 SWALL:BGLG_ECOLI (SWALL:P11989) (278 aa) fasta scores: E(): 1.7e-39, 39.63% id in 275 aa
YP_052475.1	Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides
YP_052476.1	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF
YP_052477.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 6e-98, 86.33% id in 300 aa
YP_052478.1	transports peptides consisting of two or three amino acids
YP_052479.1	Similar to Escherichia coli periplasmic dipeptide transport protein precursor DppA or b3544 SWALL:DPPA_ECOLI (SWALL:P23847) (535 aa) fasta scores: E(): 6.9e-186, 81.68% id in 535 aa
YP_052480.1	Similar to Bacillus subtilis Na(+)-malate symporter MaeN SWALL:MAEN_BACSU (SWALL:O05256) (448 aa) fasta scores: E(): 2.5e-95, 58.93% id in 414 aa
YP_052483.1	response regulator in two-component regulatory system with DcuS; phosphorylated DcuR activates transcription of genes involved in anaerobic fumarate respiration
YP_052484.1	C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration
YP_052485.1	Similar to Spinacia oleracea 2-oxoglutarate/malate translocator, chloroplast precursor SodiT1 SWALL:SOT1_SPIOL (SWALL:Q41364) (569 aa) fasta scores: E(): 3e-87, 45.7% id in 466 aa, and to Vibrio vulnificus di-and tricarboxylate transporter vv20102 SWALL:AAO07076 (EMBL:AE016808) (467 aa) fasta scores: E(): 6e-127, 65.23% id in 466 aa
YP_052486.1	Similar to Yersinia pestis hypothetical membrane protein ypo4083 or y4100 SWALL:Y4I3_YERPE (SWALL:Q8Z9V7) (552 aa) fasta scores: E(): 2.4e-166, 80.07% id in 552 aa, and to Salmonella typhimurium hypothetical membrane protein yide or stm3807 SWALL:YIDE_SALTY (SWALL:Q8ZL04) (553 aa) fasta scores: E(): 5.2e-158, 76.5% id in 549 aa
YP_052487.1	16 kDa heat shock protein B; associates with aggregated proteins, together with ibpA, to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress; ATP-independent
YP_052488.1	with IbpB associates with aggregated proteins to stabilize and protect them from irreversible denaturation and extensive proteolysis during heat shock and oxidative stress
YP_052489.1	Similar to Yersinia pestis  lipoprotein ypo4086 or y4103 SWALL:Q8Z9V4 (EMBL:AJ414160) (112 aa) fasta scores: E(): 2.8e-19, 55.35% id in 112 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yidq precursor yidq or b3688 or sf3775 SWALL:YIDQ_ECOLI (SWALL:P31454) (110 aa) fasta scores: E(): 1.2e-15, 46.55% id in 116 aa
YP_052490.1	Similar to Salmonella typhi  ATP/GTP-binding protein sty3967 SWALL:Q8Z2M0 (EMBL:AL627280) (408 aa) fasta scores: E(): 1.1e-44, 61.39% id in 417 aa, and to Escherichia coli hypothetical protein yidr or b3689 SWALL:YIDR_ECOLI (SWALL:P31455) (416 aa) fasta scores: E(): 7.8e-40, 61.08% id in 406 aa
YP_052491.1	Similar to Yersinia pestis  exported protein ypo2521 or y1667 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 6.2e-12, 55.29% id in 85 aa, and to Salmonella typhimurium, and Salmonella typhi  periplasmic protein ybij or stm0823 or sty0860 SWALL:Q8XFN7 (EMBL:AE008734) (86 aa) fasta scores: E(): 1.7e-11, 56.47% id in 85 aa
YP_052492.1	Similar to Salmonella typhimurium  glycosyl hydrolase family stm3775 SWALL:Q8ZL24 (EMBL:AE008876) (460 aa) fasta scores: E(): 1.6e-161, 78.99% id in 457 aa, and to Bacillus subtilis hypothetical protein YdhP SWALL:O05508 (EMBL:D88802) (465 aa) fasta scores: E(): 8.1e-132, 64.05% id in 459 aa
YP_052493.1	Similar to Lactobacillus casei PTS system, lactose-specific IIbc component LacE SWALL:PTLB_LACCA (SWALL:P24400) (577 aa) fasta scores: E(): 1.4e-42, 31.78% id in 431 aa, and to Vibrio vulnificus phosphotransferase system cellobiose-specific component IIc vv11483 SWALL:AAO09922 (EMBL:AE016801) (443 aa) fasta scores: E(): 5.4e-96, 49.88% id in 437 aa
YP_052494.1	Similar to Bacillus stearothermophilus PTS system, cellobiose-specific IIb component celA SWALL:PTCB_BACST (SWALL:Q45399) (100 aa) fasta scores: E(): 9.2e-14, 50.52% id in 95 aa
YP_052495.1	part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic subunit SsuB the ATP-binding subunit and SsuC the permease
YP_052496.1	catalyzes the release of sulfite from alkanesulfonates
YP_052497.1	Similar to Escherichia coli  aliphatic sulfonates transport permease protein SsuC or b0934 SWALL:SSUC_ECOLI (SWALL:P75851) (263 aa) fasta scores: E(): 2.5e-77, 78.59% id in 257 aa
YP_052498.1	part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease
YP_052499.1	Similar to Yersinia pestis  exported protein ypo2521 or y1667 SWALL:Q8ZDN9 (EMBL:AJ414152) (86 aa) fasta scores: E(): 3.5e-15, 66.27% id in 86 aa, and to Salmonella typhimurium, and Salmonella typhi  periplasmic protein ybij or stm0823 or sty0860 SWALL:Q8XFN7 (EMBL:AE008734) (86 aa) fasta scores: E(): 8.1e-14, 59.3% id in 86 aa
YP_052500.1	Similar to Escherichia coli, and Escherichia coli O6 D-galactonate transporter DgoT or b3691 or c4612 SWALL:DGOT_ECOLI (SWALL:P31457) (430 aa) fasta scores: E(): 2.1e-144, 83.72% id in 430 aa, and to Escherichia coli probable glucarate transporter GudP or b2789 SWALL:GUDP_ECOLI (SWALL:Q46916) (450 aa) fasta scores: E(): 1.5e-68, 41.62% id in 430 aa
YP_052501.1	Similar to the C-terminal region of Escherichia coli DgoA protein [includes: 2-dehydro-3-deoxyphosphogalactonate aldolase; galactonate dehydratase] DgoA or DgoD or b3692 SWALL:DGOA_ECOLI (SWALL:P31458) (587 aa) fasta scores: E(): 1.2e-130, 85.34% id in 382 aa, and similar, over the entire length, to Salmonella typhimurium galactonate dehydratase in bifunctional: 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase DgoA or stm3828 SWALL:Q8ZKZ1 (EMBL:AE008878) (382 aa) fasta scores: E(): 2.2e-130, 85.07% id in 382 aa
YP_052502.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism
YP_052503.1	Similar to Escherichia coli 2-dehydro-3-deoxygalactonokinase DgoK or b3693 SWALL:DGOK_ECOLI (SWALL:P31459) (292 aa) fasta scores: E(): 3.5e-61, 54.76% id in 294 aa
YP_052504.1	Similar to Escherichia coli galactonate operon transcriptional repressor DgoR or b3694/b3695 SWALL:DGOR_ECOLI (SWALL:P31460) (229 aa) fasta scores: E(): 6.9e-70, 80.61% id in 227 aa
YP_052505.1	Similar to Rhizobium loti ABC transporter ATP-binding protein mlr6287 SWALL:Q989T5 (EMBL:AP003008) (616 aa) fasta scores: E(): 1e-141, 65.67% id in 603 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein MoaD or atu4723 or agr_l_318 SWALL:Q8U6T3 (EMBL:AE009400) (642 aa) fasta scores: E(): 9.6e-143, 64.59% id in 610 aa
YP_052506.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 2.7e-36, 40.14% id in 274 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppC2 or rsc1883 or rs03443 SWALL:Q8XY80 (EMBL:AL646067) (311 aa) fasta scores: E(): 4.2e-68, 61.75% id in 285 aa
YP_052507.1	Similar to Bacillus subtilis oligopeptide transport system permease protein AppB SWALL:APPB_BACSU (SWALL:P42062) (317 aa) fasta scores: E(): 2.2e-41, 37.46% id in 323 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppB2 or rsc1882 or rs03442 SWALL:Q8XY81 (EMBL:AL646067) (328 aa) fasta scores: E(): 4.7e-78, 61.12% id in 319 aa
YP_052508.1	Similar to Rhizobium meliloti  nucleoside hydrolase protein r00415 or smc01105 SWALL:Q92SI0 (EMBL:AL591783) (314 aa) fasta scores: E(): 1.3e-49, 47.74% id in 310 aa, and to Agrobacterium tumefaciens inosine-uridine preferring nucleoside hydrolase IunH or atu0374 or agr_c_654 SWALL:Q8UIC3 (EMBL:AE009008) (333 aa) fasta scores: E(): 2.5e-48, 44.37% id in 311 aa
YP_052509.1	Similar to Rhizobium meliloti  nucleoside hydrolase protein r00415 or smc01105 SWALL:Q92SI0 (EMBL:AL591783) (314 aa) fasta scores: E(): 6.6e-47, 46.32% id in 313 aa, and to Agrobacterium tumefaciens inosine-uridine preferring nucleoside hydrolase iunh or atu0374 or agr_c_654 SWALL:Q8UIC3 (EMBL:AE009008) (333 aa) fasta scores: E(): 4.3e-50, 49.83% id in 309 aa
YP_052510.1	Similar to Bradyrhizobium japonicum Bll7272 protein bll7272 SWALL:BAC52537 (EMBL:AP005961) (291 aa) fasta scores: E(): 3.2e-70, 65.97% id in 288 aa, and to Pseudomonas aeruginosa probable dihydrodipicolinate synthetase pa0223 SWALL:Q9I6R5 (EMBL:AE004460) (293 aa) fasta scores: E(): 8.8e-24, 32.29% id in 288 aa
YP_052511.1	Similar to Ralstonia solanacearum probable substrate-binding periplasmic rsc0044 or rs01867 SWALL:Q8Y3D6 (EMBL:AL646057) (530 aa) fasta scores: E(): 8.5e-82, 45.54% id in 516 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu5253 or agr_pat_361 SWALL:Q8UK70 (EMBL:AE008948) (545 aa) fasta scores: E(): 2.8e-65, 39.53% id in 516 aa
YP_052512.1	Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa
YP_052513.1	YidA; catalyzes the dephosphorylation of erythrose 4-phosphate (preferred substrate), mannose 1-phosphate and p-nitrophenyl phosphate; hydrolyzes the alpha-D-glucose-1-phosphate but not the beta form; member of the haloacid dehalogenase-like hydrolases superfamily and Cof family of proteins
YP_052514.1	Similar to the C-terminal region of Shewanella oneidensis issod4, transposase SWALL:AAN53461 (EMBL:AE015911) (400 aa) fasta scores: E(): 2.2e-14, 66.12% id in 62 aa, and to Yersinia pestis  transposase SWALL:O68702 (EMBL:AF053946) (99 aa) fasta scores: E(): 4.9e-17, 77.41% id in 62 aa
YP_052515.1	Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 1.5e-30, 42.01% id in 238 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 7e-28, 42.22% id in 225 aa
YP_052516.1	No significant database matches. Strongly similar to ECA2106 (87.651% id) and ECA4356 (87.783% id) and
YP_052517.1	Similar to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.5e-159, 76.21% id in 475 aa, and to Bacillus subtilis 6-phospho-beta-glucosidase BglA SWALL:BGLA_BACSU (SWALL:P42973) (479 aa) fasta scores: E(): 3.2e-128, 62.18% id in 476 aa. Also similar to ECA1871 (ArbB) (53.669% id), ECA0662 (51.875% id), ECA4407 (32.500% id), ECA2166 (50.103% id), ECA4387 (49.899% id), ECA0859 (40.733% id), ECA1451 (39.754% id) and to ECA3646 (429.878% id)
YP_052518.1	Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component celc or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 8e-14, 47.47% id in 99 aa
YP_052519.1	Similar to Streptococcus mutans PTS system, lactose-specific IIbc component lace or smu.1491 SWALL:PTLB_STRMU (SWALL:P50976) (568 aa) fasta scores: E(): 5.9e-45, 35.37% id in 441 aa, and to Vibrio cholerae PTS system, cellobiose-specific iic component vc1282 SWALL:Q9KSH4 (EMBL:AE004207) (446 aa) fasta scores: E(): 3.7e-98, 54.37% id in 423 aa
YP_052520.1	Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 1.5e-11, 48.95% id in 96 aa, and to Vibrio cholerae PTS system, cellobiose-specific iib component vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.4e-17, 53.46% id in 101 aa
YP_052521.1	Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 3.8e-74, 58.61% id in 331 aa, and to Salmonella typhimurium  transcriptional regulator stm3012 SWALL:Q8ZMA3 (EMBL:AE008838) (340 aa) fasta scores: E(): 3.5e-60, 49.85% id in 335 aa
YP_052522.1	Similar to Pseudomonas putida hypothetical protein pp2034 SWALL:AAN67648 (EMBL:AE016781) (419 aa) fasta scores: E(): 1.6e-73, 54.35% id in 390 aa, and to Bradyrhizobium japonicum Bll1005 protein bll1005 SWALL:BAC46270 (EMBL:AP005938) (402 aa) fasta scores: E(): 4.5e-66, 51.26% id in 394 aa
YP_052523.1	negatively supercoils closed circular double-stranded DNA
YP_052524.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_052525.1	binds the polymerase to DNA and acts as a sliding clamp
YP_052526.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_052528.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_052529.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_052530.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_052531.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_052533.1	Similar to Vibrio metschnikovii Orfc273-5 orfc273-5 SWALL:AAN33038 (EMBL:AF530480) (278 aa) fasta scores: E(): 3e-23, 57.03% id in 128 aa, and to Zymomonas mobilis hypothetical 36.8 kDa protein SWALL:Q9Z668 (EMBL:AF102543) (318 aa) fasta scores: E(): 6.5e-13, 37.95% id in 137 aa
YP_052534.1	Similar to Escherichia coli hypothetical protein ytfg or b4211 SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 6e-61, 66.54% id in 278 aa, and to Yersinia pestis hypothetical protein ypo1645 or y1806 SWALL:Q8ZFP8 (EMBL:AJ414149) (285 aa) fasta scores: E(): 3.2e-65, 68.79% id in 282 aa
YP_052535.1	Similar to Escherichia coli, and Shigella flexneri hypothetical protein ytfh or b4212 or sf4275 SWALL:YTFH_ECOLI (SWALL:P39316) (126 aa) fasta scores: E(): 6.5e-28, 66.95% id in 115 aa, and to Salmonella typhimurium, and Salmonella typhi  transcriptional regulator ytfh or stm4402 or sty4760 SWALL:Q8XGE7 (EMBL:AE008906) (128 aa) fasta scores: E(): 3.1e-27, 65.48% id in 113 aa
YP_052536.1	Similar to Yersinia pestis HmsS or ypo1954 or y2356 SWALL:P74989 (EMBL:U22837) (155 aa) fasta scores: E(): 8.8e-07, 28.77% id in 139 aa
YP_052537.1	predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein
YP_052538.1	in Yersinia this protein is involved in biofilm formation and hemin adsorption; related protein PgaB in Escherichia coli is an outer membrane N-deacetylase involved in poly-beta-1,6-N-acetyl-D-glucosamine (PGA) export
YP_052539.1	outer membrane protein essential for the synthesis of poly-beta-1,6-N-acetyl-D-glucosamine (PGA); adhesin required for biofilm formation; PgaA (HmsH) seems to translocate and/or dock PGA to the cell surface; member of the hmsHFRS (ycdSRQP or pgaABCD in Escherichia coli) operon in Yersinia
YP_052540.1	Similar to Xanthomonas axonopodis hypothetical protein Xac3950 SWALL:Q8PFN0 (EMBL:AE012044) (293 aa) fasta scores: E(): 9.4e-41, 37.94% id in 282 aa, and to Vibrio cholerae hypothetical protein Vc1772 SWALL:Q9KR71 (EMBL:AE004254) (286 aa) fasta scores: E(): 3e-24, 33.21% id in 283 aa
YP_052541.1	Similar to Salmonella typhimurium methyl viologen resistance protein SmvA or stm1574 SWALL:SMVA_SALTY (SWALL:P37594) (495 aa) fasta scores: E(): 5.1e-64, 41.33% id in 496 aa
YP_052542.1	Similar to Yersinia pestis  lipoprotein ypo2970 or y1514 SWALL:Q8ZCL3 (EMBL:AJ414154) (218 aa) fasta scores: E(): 2.1e-56, 69.58% id in 217 aa, and to Ralstonia solanacearum probable lipoprotein rsp0675 or rs01774 SWALL:Q8XS06 (EMBL:AL646080) (223 aa) fasta scores: E(): 5.9e-47, 59.09% id in 220 aa
YP_052543.1	Similar to Yersinia pestis  lipoprotein ypo2971 SWALL:Q8ZCL2 (EMBL:AJ414154) (118 aa) fasta scores: E(): 1.6e-25, 65.21% id in 115 aa, and to Ralstonia solanacearum probable lipoprotein rsp0674 or rs01775 SWALL:Q8XS07 (EMBL:AL646080) (125 aa) fasta scores: E(): 3.4e-17, 46.15% id in 117 aa
YP_052544.1	Similar to Yersinia pestis  lipoprotein ypo2972 SWALL:Q8ZCL1 (EMBL:AJ414154) (223 aa) fasta scores: E(): 2.5e-65, 78.82% id in 222 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0045 SWALL:Q9I787 (EMBL:AE004444) (228 aa) fasta scores: E(): 6.8e-58, 73.68% id in 209 aa
YP_052545.1	unknown function; in E. coli the aegA gene is regulated by Fnr, NarXL, and NarQ (but not ArcA), induced under anaerobic conditions and repressed in the presence of nitrate (anaerobic)
YP_052546.1	Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 electron transport protein HydN or b2713 or c3269 or z4021 or ecs3569 SWALL:HYDN_ECOLI (SWALL:P30132) (175 aa) fasta scores: E(): 4e-33, 49.71% id in 173 aa
YP_052547.1	Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein yiee or b3712 or c4635 SWALL:YIEE_ECOLI (SWALL:P31464) (253 aa) fasta scores: E(): 1.6e-25, 34.81% id in 247 aa, and to Salmonella typhimurium, and Salmonella typhi  cytoplasmic protein yiee or stm3849 or sty3934 SWALL:Q8XF90 (EMBL:AE008879) (251 aa) fasta scores: E(): 6.4e-24, 33.33% id in 237 aa
YP_052548.1	Similar to Yersinia pestis  membrane/transport protein, symporter y4121 SWALL:AAM87663 (EMBL:AE014013) (461 aa) fasta scores: E(): 3e-144, 89.13% id in 460 aa, and to Salmonella typhimurium  xanthine/uracil permeases family yieg or stm3851 SWALL:Q8ZKX8 (EMBL:AE008879) (487 aa) fasta scores: E(): 2e-135, 83.59% id in 451 aa
YP_052549.1	Similar to Salmonella typhimurium, and Salmonella typhi phage shock protein PspD or stm1687 or sty1374 SWALL:Q8XEN8 (EMBL:AE008775) (72 aa) fasta scores: E(): 2.4, 31.08% id in 74 aa, and to Salmonella typhi phage shock protein D PspD or t1592 SWALL:AAO69223 (EMBL:AE016839) (72 aa) fasta scores: E(): 2.4, 31.08% id in 74 aa
YP_052550.1	YieH; catalyzes the dephosphorylation of phosphoenolpyruvate, AMP and p-nitrophenyl phosphate; purine and pyrimidine nucleotides are secondary substrates; member of the haloacid dehalogenase-like hydrolases superfamily
YP_052551.1	Similar to Yersinia pestis  amino acid transport system permease ypo4109 SWALL:Q8Z9T6 (EMBL:AJ414160) (251 aa) fasta scores: E(): 6.5e-74, 82.44% id in 245 aa, and to Pseudomonas aeruginosa probable amino acid permease pa2202 SWALL:Q9I1R5 (EMBL:AE004646) (225 aa) fasta scores: E(): 1e-52, 66.66% id in 216 aa
YP_052552.1	Similar to Yersinia pestis ABC transporter permease ypo4110 or gltj or y4124 SWALL:AAM87666 (EMBL:AJ414160) (245 aa) fasta scores: E(): 4.7e-70, 75.72% id in 243 aa, and to Pseudomonas aeruginosa probable amino acid permease pa2203 SWALL:Q9I1R4 (EMBL:AE004646) (238 aa) fasta scores: E(): 5.6e-47, 62.88% id in 229 aa
YP_052553.1	Similar to Yersinia pestis  periplasmic solute-binding protein ypo4111 or y4125 SWALL:Q8Z9T4 (EMBL:AJ414160) (284 aa) fasta scores: E(): 2e-86, 83.81% id in 278 aa, and to Pseudomonas aeruginosa probable binding protein component of ABC transporter pa2204 SWALL:Q9I1R3 (EMBL:AE004647) (268 aa) fasta scores: E(): 1.6e-55, 58.77% id in 262 aa
YP_052554.1	Similar to Acinetobacter calcoaceticus benzoate membrane transport protein BenE SWALL:BENE_ACICA (SWALL:P07775) (394 aa) fasta scores: E(): 2.2e-55, 41.2% id in 381 aa, and to Salmonella typhi  benzoate membrane transport protein sty1458 SWALL:Q8Z753 (EMBL:AL627270) (412 aa) fasta scores: E(): 2.9e-80, 57.03% id in 391 aa
YP_052555.1	Similar to Escherichia coli hypothetical protein ydcn or b1434 SWALL:YDCN_ECOLI (SWALL:P77626) (178 aa) fasta scores: E(): 2.1e-36, 54.64% id in 183 aa, and to Salmonella typhi  DNA-binding protein t1514 SWALL:AAO69149 (EMBL:AE016839) (178 aa) fasta scores: E(): 1.6e-35, 54.09% id in 183 aa
YP_052556.1	regulates several genes involved in high affinity phosphate uptake; under conditions of high phosphate concentrations downregulates the PHO regulon
YP_052557.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_052558.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_052559.1	part of the ATP-dependent phosphate uptake system PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_052560.1	Similar to Escherichia coli, and Shigella flexneri phosphate-binding periplasmic protein precursor PstS or PhoS or b3728 or sf3727 SWALL:PSTS_ECOLI (SWALL:P06128) (346 aa) fasta scores: E(): 4.6e-109, 82.65% id in 346 aa
YP_052561.1	Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa
YP_052562.1	Similar to Ralstonia solanacearum probable amino acid transmembrane ABC transporter protein rsp0933 or rs05400 SWALL:Q8XRC5 (EMBL:AL646081) (248 aa) fasta scores: E(): 2.3e-55, 60.26% id in 229 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4282 or agr_l_1163 SWALL:Q8U817 (EMBL:AE009356) (252 aa) fasta scores: E(): 1.1e-50, 56.38% id in 227 aa
YP_052563.1	Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 2.8e-19, 30.94% id in 223 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4281 or agr_l_1164 SWALL:Q8U818 (EMBL:AE009356) (235 aa) fasta scores: E(): 9.3e-48, 57.01% id in 221 aa
YP_052564.1	Similar to Agrobacterium tumefaciens short-chain dehydrogenase atu4280 or agr_l_1165 SWALL:Q8U819 (EMBL:AE009356) (259 aa) fasta scores: E(): 9.9e-61, 66.12% id in 245 aa, and to Ralstonia solanacearum probable oxidoreductase protein rsp0935 or rs05398 SWALL:Q8XRC3 (EMBL:AL646081) (250 aa) fasta scores: E(): 4.9e-67, 70.56% id in 248 aa
YP_052565.1	Similar to Bradyrhizobium japonicum Bll3635 protein bll3635 SWALL:Q89P48 (EMBL:AP005948) (141 aa) fasta scores: E(): 2.8e-07, 32.84% id in 137 aa, and to Pseudomonas syringae conserved hypothetical protein pspto2918 SWALL:Q881H5 (EMBL:AE016866) (135 aa) fasta scores: E(): 0.00068, 26.31% id in 133 aa
YP_052566.1	Transcriptional activator for the hut, put and ure operons and repressor for the gdh and gltB operons in response to nitrogen limitation
YP_052568.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_052569.1	Similar to Agrobacterium tumefaciens hypothetical protein atu4277 or agr_l_1172 SWALL:Q8U822 (EMBL:AE009356) (263 aa) fasta scores: E(): 3.3e-64, 66.27% id in 252 aa, and to Bradyrhizobium japonicum Blr3634 protein blr3634 SWALL:BAC48899 (EMBL:AP005948) (255 aa) fasta scores: E(): 1.6e-57, 63.2% id in 250 aa
YP_052570.1	Similar to Agrobacterium tumefaciens hypothetical protein atu4276 or agr_l_1174 SWALL:Q8U823 (EMBL:AE009356) (331 aa) fasta scores: E(): 1.5e-66, 57.41% id in 317 aa, and to Bradyrhizobium japonicum Blr3633 protein blr3633 SWALL:BAC48898 (EMBL:AP005948) (325 aa) fasta scores: E(): 6.3e-57, 50% id in 320 aa
YP_052571.1	Similar to Agrobacterium tumefaciens hypothetical protein atu4275 or agr_l_1175 SWALL:Q8U824 (EMBL:AE009356) (235 aa) fasta scores: E(): 2.3e-49, 57.45% id in 228 aa, and to Bradyrhizobium japonicum Blr3632 protein blr3632 SWALL:BAC48897 (EMBL:AP005948) (239 aa) fasta scores: E(): 4.8e-39, 51.64% id in 213 aa
YP_052572.1	Similar to Ralstonia solanacearum probable amino-acid-binding periplasmic ABC transporter protein rsp0931 or rs05402 SWALL:Q8XRC7 (EMBL:AL646081) (280 aa) fasta scores: E(): 1.3e-54, 53.4% id in 279 aa, and to Ralstonia solanacearum probable amino-acid-binding periplasmic ABC transporter protein rsc2257 or rs01302 SWALL:Q8XX59 (EMBL:AL646069) (284 aa) fasta scores: E(): 1e-25, 33.33% id in 255 aa
YP_052573.1	Similar to Rhizobium meliloti hypothetical transmembrane protein smc02371 r01027 or smc02371 SWALL:Q92R83 (EMBL:AL591785) (312 aa) fasta scores: E(): 5.7e-37, 41.27% id in 298 aa, and to Brucella melitensis transporter, dme family bmei1323 SWALL:Q8YG39 (EMBL:AE009570) (319 aa) fasta scores: E(): 1.6e-36, 39.51% id in 291 aa
YP_052574.1	FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_052575.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_052576.1	Similar to Streptococcus pyogenes, and Streptococcus pyogenes FabZ or spy1746 or spym18_1818 SWALL:FABZ_STRPY (SWALL:P58175) (139 aa) fasta scores: E(): 8e-05, 32.84% id in 137 aa, and to Escherichia coli O157:H7  beta-hydroxydecanoyl-ACP dehydrase z4864 or ecs4339 SWALL:Q8X6K7 (EMBL:AE005571) (154 aa) fasta scores: E(): 2.8e-29, 51.59% id in 157 aa
YP_052577.1	FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_052578.1	Similar to Escherichia coli O157:H7 z4862 protein z4862 or ecs4337 SWALL:Q8X6L1 (EMBL:AE005571) (194 aa) fasta scores: E(): 2.6e-49, 65.4% id in 185 aa, and to Vibrio vulnificus conserved hypothetical protein vv10057 SWALL:AAO08599 (EMBL:AE016797) (183 aa) fasta scores: E(): 2.9e-09, 35.22% id in 159 aa
YP_052579.1	Similar to Escherichia coli O6 conserved hypothetical protein c1191 SWALL:AAN79653 (EMBL:AE016758) (772 aa) fasta scores: E(): 8.3e-184, 64.43% id in 762 aa, and to Vibrio vulnificus predicted exporter vv10056 SWALL:AAO08598 (EMBL:AE016797) (756 aa) fasta scores: E(): 5.4e-85, 36.17% id in 763 aa
YP_052580.1	Similar to Escherichia coli O6 conserved hypothetical protein c1192 SWALL:AAN79654 (EMBL:AE016758) (201 aa) fasta scores: E(): 5.5e-45, 60% id in 190 aa, and to Vibrio vulnificus conserved hypothetical protein vv10055 SWALL:AAO08597 (EMBL:AE016797) (208 aa) fasta scores: E(): 1.7e-24, 37.87% id in 198 aa
YP_052581.1	Similar to Escherichia coli O6 hypothetical protein c1193 SWALL:AAN79655 (EMBL:AE016758) (140 aa) fasta scores: E(): 5.7e-45, 76.42% id in 140 aa, and to Vibrio vulnificus predicted thioesterase vv10054 SWALL:AAO08596 (EMBL:AE016797) (148 aa) fasta scores: E(): 4.2e-27, 52.3% id in 130 aa
YP_052582.1	Similar to Escherichia coli O6  enzyme c1194 SWALL:AAN79656 (EMBL:AE016758) (540 aa) fasta scores: E(): 2.2e-148, 66.17% id in 541 aa, and to Vibrio vulnificus predicted acyltransferase vv10052 SWALL:AAO08594 (EMBL:AE016797) (569 aa) fasta scores: E(): 1.5e-122, 54% id in 574 aa
YP_052583.1	Similar to Escherichia coli O6 conserved hypothetical protein c1196 SWALL:AAN79658 (EMBL:AE016758) (125 aa) fasta scores: E(): 3.4e-24, 54.78% id in 115 aa, and to Vibrio vulnificus 3-hydroxymyristoyl/3-hydroxydecanoyl- vv10051 SWALL:AAO08593 (EMBL:AE016797) (123 aa) fasta scores: E(): 2.4e-14, 49.12% id in 114 aa
YP_052584.1	Similar to Escherichia coli O157:H7  enzyme z4856 or ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 3.5e-72, 46.3% id in 447 aa, and to Vibrio vulnificus acyl-coenzyme A synthetase vv10050 SWALL:Q8DG01 (EMBL:AE016797) (455 aa) fasta scores: E(): 9.7e-48, 37.86% id in 441 aa
YP_052585.1	Similar to Escherichia coli O6 conserved hypothetical protein c1198 SWALL:AAN79660 (EMBL:AE016758) (194 aa) fasta scores: E(): 2.3e-36, 52.4% id in 187 aa, and to Vibrio vulnificus predicted membrane protein vv10049 SWALL:AAO08591 (EMBL:AE016797) (185 aa) fasta scores: E(): 6.6e-27, 42.32% id in 189 aa
YP_052586.1	carries the fatty acid chain in fatty acid biosynthesis
YP_052587.1	Similar to Escherichia coli O6  acyl carrier protein c1200 SWALL:AAN79662 (EMBL:AE016758) (85 aa) fasta scores: E(): 4.9e-22, 72.94% id in 85 aa, and to Vibrio vulnificus acyl carrier protein vv10047 SWALL:AAO08589 (EMBL:AE016797) (86 aa) fasta scores: E(): 1.5e-18, 65.06% id in 83 aa
YP_052588.1	Similar to Escherichia coli O6  phospholipid biosynthesis acyltransferase c1201 SWALL:Q8FJ00 (EMBL:AE016758) (279 aa) fasta scores: E(): 6.5e-63, 61.56% id in 268 aa, and to Vibrio vulnificus 1-acyl-sn-glycerol-3-phosphate acyltransferase vv10046 SWALL:Q8DG05 (EMBL:AE016797) (252 aa) fasta scores: E(): 6.7e-40, 44% id in 250 aa
YP_052589.1	Similar to Escherichia coli O157:H7 hypothetical protein z4851 or ecs4326 SWALL:Q8X6N8 (EMBL:AE005571) (240 aa) fasta scores: E(): 1.2e-50, 55.69% id in 237 aa, and to Pseudomonas syringae conserved hypothetical protein pspto5091 SWALL:Q87V50 (EMBL:AE016874) (239 aa) fasta scores: E(): 5.8e-21, 35.98% id in 239 aa
YP_052590.1	Similar to Escherichia coli O6 conserved hypothetical protein c1204 SWALL:Q8FIZ7 (EMBL:AE016758) (129 aa) fasta scores: E(): 1.2e-18, 46.4% id in 125 aa, and to Vibrio vulnificus conserved hypothetical protein vv10044 SWALL:Q8DG07 (EMBL:AE016797) (118 aa) fasta scores: E(): 8e-12, 41.07% id in 112 aa
YP_052591.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_052592.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_052593.1	Similar to Erwinia chrysanthemi exopolygalacturonate lyase PelX SWALL:Q9Z5P8 (EMBL:Y16797) (734 aa) fasta scores: E(): 1.9e-206, 73.8% id in 733 aa, and to Erwinia chrysanthemi pectate disaccharide-lyase precursor PelX SWALL:PELX_ERWCH (SWALL:P22751) (749 aa) fasta scores: E(): 2.8e-195, 74.16% id in 689 aa
YP_052594.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_052595.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_052596.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_052597.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_052598.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_052599.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_052600.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_052601.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_052602.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation
YP_052603.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_052604.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs