-- dump date 20140619_232520 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 278197000001 SEQ_END SEQ_END NC_008525.1 1832387 1832387 DR NC_008525.1; contig end 1832387..1832387 Pediococcus pentosaceus ATCC 25745 YP_803554.1 CDS dnaA NC_008525.1 50 1390 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 50..1390 Pediococcus pentosaceus ATCC 25745 4416998 YP_803555.1 CDS PEPE_0002 NC_008525.1 1568 2707 D DNA polymerase III, beta subunit 1568..2707 Pediococcus pentosaceus ATCC 25745 4416999 YP_803556.1 CDS PEPE_0003 NC_008525.1 2928 3155 D S4-like RNA binding protein 2928..3155 Pediococcus pentosaceus ATCC 25745 4417000 YP_803557.1 CDS recF NC_008525.1 3155 4279 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3155..4279 Pediococcus pentosaceus ATCC 25745 4417001 YP_803558.1 CDS PEPE_0005 NC_008525.1 4284 6230 D DNA gyrase subunit B 4284..6230 Pediococcus pentosaceus ATCC 25745 4418726 YP_803559.1 CDS PEPE_0006 NC_008525.1 6279 8810 D DNA gyrase subunit A 6279..8810 Pediococcus pentosaceus ATCC 25745 4418727 YP_803560.1 CDS PEPE_0007 NC_008525.1 9057 9341 D SSU ribosomal protein S6P 9057..9341 Pediococcus pentosaceus ATCC 25745 4418728 YP_803561.1 CDS PEPE_0008 NC_008525.1 9377 9904 D single-stranded DNA-binding protein 9377..9904 Pediococcus pentosaceus ATCC 25745 4418729 YP_803562.1 CDS PEPE_0009 NC_008525.1 9928 10164 D SSU ribosomal protein S18P 9928..10164 Pediococcus pentosaceus ATCC 25745 4418730 YP_803563.1 CDS PEPE_0010 NC_008525.1 10367 12367 D signal protein 10367..12367 Pediococcus pentosaceus ATCC 25745 4418731 YP_803564.1 CDS PEPE_0011 NC_008525.1 12373 12825 D 50S ribosomal protein L9 12373..12825 Pediococcus pentosaceus ATCC 25745 4418732 YP_803565.1 CDS PEPE_0012 NC_008525.1 12874 14271 D primary replicative DNA helicase 12874..14271 Pediococcus pentosaceus ATCC 25745 4418733 YP_803566.1 CDS PEPE_0013 NC_008525.1 14364 15563 D major facilitator superfamily permease 14364..15563 Pediococcus pentosaceus ATCC 25745 4418734 YP_803567.1 CDS PEPE_0014 NC_008525.1 15587 15955 R hypothetical protein complement(15587..15955) Pediococcus pentosaceus ATCC 25745 4418735 YP_803568.1 CDS PEPE_0015 NC_008525.1 16199 16930 D permease 16199..16930 Pediococcus pentosaceus ATCC 25745 4418736 YP_803569.1 CDS PEPE_0016 NC_008525.1 17257 18741 D ABC transporter ATPase 17257..18741 Pediococcus pentosaceus ATCC 25745 4418737 YP_803570.1 CDS PEPE_0017 NC_008525.1 18825 19328 D transcriptional regulator 18825..19328 Pediococcus pentosaceus ATCC 25745 4418738 YP_803571.1 CDS PEPE_0018 NC_008525.1 19331 20395 D peptide ABC transporter permease 19331..20395 Pediococcus pentosaceus ATCC 25745 4418739 YP_803572.1 CDS PEPE_0019 NC_008525.1 20399 21076 D peptide ABC transporter ATPase 20399..21076 Pediococcus pentosaceus ATCC 25745 4418740 YP_803573.1 CDS PEPE_0020 NC_008525.1 21247 21819 D XRE family transcriptional regulator 21247..21819 Pediococcus pentosaceus ATCC 25745 4418741 YP_803574.1 CDS PEPE_0021 NC_008525.1 21867 23051 R acetyltransferase complement(21867..23051) Pediococcus pentosaceus ATCC 25745 4418742 YP_803575.1 CDS PEPE_0022 NC_008525.1 23066 23251 R hypothetical protein complement(23066..23251) Pediococcus pentosaceus ATCC 25745 4418691 YP_803576.1 CDS PEPE_0023 NC_008525.1 23258 24493 R cellobiose-specific PTS system IIC component complement(23258..24493) Pediococcus pentosaceus ATCC 25745 4418692 YP_803577.1 CDS PEPE_0024 NC_008525.1 24750 25106 R transcriptional regulator complement(24750..25106) Pediococcus pentosaceus ATCC 25745 4418693 YP_803578.1 CDS PEPE_0025 NC_008525.1 25243 26082 D aldo/keto reductase 25243..26082 Pediococcus pentosaceus ATCC 25745 4418694 YP_803579.1 CDS PEPE_0026 NC_008525.1 26103 26897 D Short-chain alcohol dehydrogenase 26103..26897 Pediococcus pentosaceus ATCC 25745 4418695 YP_803580.1 CDS PEPE_0027 NC_008525.1 26992 27540 D flavoprotein 26992..27540 Pediococcus pentosaceus ATCC 25745 4418696 YP_803581.1 CDS PEPE_0028 NC_008525.1 27600 27935 R ArsR family transcriptional regulator complement(27600..27935) Pediococcus pentosaceus ATCC 25745 4418697 YP_803582.1 CDS PEPE_0029 NC_008525.1 28001 28606 D permease, cadmium resistance protein 28001..28606 Pediococcus pentosaceus ATCC 25745 4418698 YP_803583.1 CDS PEPE_0030 NC_008525.1 28732 30021 D hypothetical protein 28732..30021 Pediococcus pentosaceus ATCC 25745 4418699 YP_803584.1 CDS PEPE_0031 NC_008525.1 30045 30512 D hypothetical protein 30045..30512 Pediococcus pentosaceus ATCC 25745 4418700 YP_803585.1 CDS PEPE_0032 NC_008525.1 30774 31094 D membrane transporter 30774..31094 Pediococcus pentosaceus ATCC 25745 4418701 YP_803586.1 CDS PEPE_0033 NC_008525.1 31114 31752 D hypothetical protein 31114..31752 Pediococcus pentosaceus ATCC 25745 4418702 YP_803587.1 CDS PEPE_0034 NC_008525.1 31840 33201 R NAD(FAD)-dependent dehydrogenase complement(31840..33201) Pediococcus pentosaceus ATCC 25745 4418703 YP_803588.1 CDS PEPE_0035 NC_008525.1 33332 34012 D C-di-GMP-specific phosphodiesterase 33332..34012 Pediococcus pentosaceus ATCC 25745 4418704 YP_803589.1 CDS PEPE_0036 NC_008525.1 34048 34506 R BS_ykrK family protein complement(34048..34506) Pediococcus pentosaceus ATCC 25745 4418705 YP_803590.1 CDS PEPE_0037 NC_008525.1 34634 35272 D hemolysin III-like protein 34634..35272 Pediococcus pentosaceus ATCC 25745 4418706 YP_803591.1 CDS PEPE_0038 NC_008525.1 35344 35877 R acetyltransferase complement(35344..35877) Pediococcus pentosaceus ATCC 25745 4418707 YP_803592.1 CDS PEPE_0039 NC_008525.1 36064 37335 D Na+/H+-dicarboxylate symporter 36064..37335 Pediococcus pentosaceus ATCC 25745 4418708 YP_803593.1 CDS PEPE_0040 NC_008525.1 37405 39198 R glycerophosphoryl diester phosphodiesterase complement(37405..39198) Pediococcus pentosaceus ATCC 25745 4418709 YP_803594.1 CDS PEPE_0041 NC_008525.1 39323 39556 R hypothetical protein complement(39323..39556) Pediococcus pentosaceus ATCC 25745 4418710 YP_803595.1 CDS PEPE_0042 NC_008525.1 39569 40096 R membrane ancor connecting MutS2 with cell-division Z-ring complement(39569..40096) Pediococcus pentosaceus ATCC 25745 4418711 YP_803596.1 CDS PEPE_0043 NC_008525.1 40370 41059 D hypothetical protein 40370..41059 Pediococcus pentosaceus ATCC 25745 4418712 YP_803597.1 CDS PEPE_0044 NC_008525.1 41074 41754 D hypothetical protein 41074..41754 Pediococcus pentosaceus ATCC 25745 4418713 YP_803598.1 CDS PEPE_0045 NC_008525.1 41901 43502 D manganese transporter NRAMP 41901..43502 Pediococcus pentosaceus ATCC 25745 4418714 YP_803599.1 CDS PEPE_0046 NC_008525.1 43502 43933 D universal stress protein UspA-like nucleotide-binding protein 43502..43933 Pediococcus pentosaceus ATCC 25745 4418715 YP_803600.1 CDS PEPE_0047 NC_008525.1 43989 44879 R diacylglycerol kinase family lipid kinase complement(43989..44879) Pediococcus pentosaceus ATCC 25745 4418716 YP_803601.1 CDS PEPE_0048 NC_008525.1 44872 45768 R fhu operon transcription regulator complement(44872..45768) Pediococcus pentosaceus ATCC 25745 4418717 YP_803602.1 CDS PEPE_0049 NC_008525.1 45891 46445 D galactoside O-acetyltransferase 45891..46445 Pediococcus pentosaceus ATCC 25745 4418718 YP_803603.1 CDS PEPE_0050 NC_008525.1 46445 47194 D Short-chain alcohol dehydrogenase of unknown specificity 46445..47194 Pediococcus pentosaceus ATCC 25745 4418719 YP_803604.1 CDS PEPE_0051 NC_008525.1 47214 48080 D aldo/keto reductase 47214..48080 Pediococcus pentosaceus ATCC 25745 4418720 YP_803605.1 CDS PEPE_0052 NC_008525.1 48155 48898 R ABC transporter permease complement(48155..48898) Pediococcus pentosaceus ATCC 25745 4418721 YP_803606.1 CDS PEPE_0053 NC_008525.1 48900 49604 R ABC transporter ATPase complement(48900..49604) Pediococcus pentosaceus ATCC 25745 4418722 YP_803607.1 CDS PEPE_0054 NC_008525.1 49597 49974 R GntR family transcriptional regulator complement(49597..49974) Pediococcus pentosaceus ATCC 25745 4418723 YP_803608.1 CDS PEPE_0055 NC_008525.1 50136 51311 D Beta-lactamase class A 50136..51311 Pediococcus pentosaceus ATCC 25745 4418724 YP_803609.1 CDS PEPE_0056 NC_008525.1 51333 52217 D hypothetical protein 51333..52217 Pediococcus pentosaceus ATCC 25745 4418725 YP_803610.1 CDS PEPE_0057 NC_008525.1 52344 53369 D penicillin V acylase precursor. cysteine peptidase. MEROPS family C59 52344..53369 Pediococcus pentosaceus ATCC 25745 4418758 YP_803611.1 CDS PEPE_0058 NC_008525.1 53451 54203 R nicotinamide mononucleotide transporter complement(53451..54203) Pediococcus pentosaceus ATCC 25745 4418759 YP_803612.1 CDS PEPE_0059 NC_008525.1 54772 61776 D subtilisin-like serine protease 54772..61776 Pediococcus pentosaceus ATCC 25745 4418760 YP_803613.1 CDS PEPE_0060 NC_008525.1 61866 62231 R MerR family transcriptional regulator complement(61866..62231) Pediococcus pentosaceus ATCC 25745 4418761 YP_803614.1 CDS PEPE_0061 NC_008525.1 62378 63400 D Aryl-alcohol dehydrogenase related enzyme 62378..63400 Pediococcus pentosaceus ATCC 25745 4418762 YP_803615.1 CDS PEPE_0062 NC_008525.1 63976 66345 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 63976..66345 Pediococcus pentosaceus ATCC 25745 4418763 YP_803616.1 CDS PEPE_0063 NC_008525.1 66342 67574 D protein translocase subunit secY/sec61 alpha 66342..67574 Pediococcus pentosaceus ATCC 25745 4418764 YP_803617.1 CDS PEPE_0064 NC_008525.1 67597 69249 D hypothetical protein 67597..69249 Pediococcus pentosaceus ATCC 25745 4418765 YP_803618.1 CDS PEPE_0065 NC_008525.1 69239 70822 D hypothetical protein 69239..70822 Pediococcus pentosaceus ATCC 25745 4418766 YP_803619.1 CDS PEPE_0066 NC_008525.1 70815 71633 D hypothetical protein 70815..71633 Pediococcus pentosaceus ATCC 25745 4418767 YP_803620.1 CDS PEPE_0067 NC_008525.1 71661 73109 D glycosyltransferase 71661..73109 Pediococcus pentosaceus ATCC 25745 4418768 YP_803621.1 CDS PEPE_0068 NC_008525.1 73099 73947 D hypothetical protein 73099..73947 Pediococcus pentosaceus ATCC 25745 4418769 YP_803622.1 CDS PEPE_0069 NC_008525.1 74013 74744 D hypothetical protein 74013..74744 Pediococcus pentosaceus ATCC 25745 4418770 YP_803623.1 CDS PEPE_0070 NC_008525.1 74757 75554 D hypothetical protein 74757..75554 Pediococcus pentosaceus ATCC 25745 4418771 YP_803624.1 CDS PEPE_0071 NC_008525.1 75938 78595 D outer membrane protein 75938..78595 Pediococcus pentosaceus ATCC 25745 4418772 YP_803625.1 CDS PEPE_0072 NC_008525.1 78691 81252 D hypothetical protein 78691..81252 Pediococcus pentosaceus ATCC 25745 4418773 YP_803626.1 CDS PEPE_0073 NC_008525.1 81450 82235 D Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase 81450..82235 Pediococcus pentosaceus ATCC 25745 4418774 YP_803627.1 CDS PEPE_0074 NC_008525.1 82325 83206 R transcriptional regulator complement(82325..83206) Pediococcus pentosaceus ATCC 25745 4418775 YP_803628.1 CDS PEPE_0075 NC_008525.1 83353 84213 D aldo/keto reductase 83353..84213 Pediococcus pentosaceus ATCC 25745 4418793 YP_803629.1 CDS PEPE_0076 NC_008525.1 84234 85277 D threonine dehydrogenase related Zn-dependent dehydrogenase 84234..85277 Pediococcus pentosaceus ATCC 25745 4418794 YP_803630.1 CDS PEPE_0077 NC_008525.1 85747 86238 D phosphotransferase system IIA component 85747..86238 Pediococcus pentosaceus ATCC 25745 4418795 YP_803631.1 CDS PEPE_0078 NC_008525.1 86273 87103 D beta-glucoside operon antiterminator 86273..87103 Pediococcus pentosaceus ATCC 25745 4418796 YP_803632.1 CDS PEPE_0079 NC_008525.1 87130 88581 D beta-glucosides PTS, EIIBC 87130..88581 Pediococcus pentosaceus ATCC 25745 4418797 YP_803633.1 CDS PEPE_0080 NC_008525.1 88584 89342 D hypothetical protein 88584..89342 Pediococcus pentosaceus ATCC 25745 4418798 YP_803634.1 CDS PEPE_0081 NC_008525.1 89722 90000 R prebacteriocin complement(89722..90000) Pediococcus pentosaceus ATCC 25745 4418799 YP_803635.1 CDS PEPE_0082 NC_008525.1 90015 90197 R prebacteriocin complement(90015..90197) Pediococcus pentosaceus ATCC 25745 4418800 YP_803636.1 CDS PEPE_0083 NC_008525.1 90635 91933 D signal transduction protein 90635..91933 Pediococcus pentosaceus ATCC 25745 4418801 YP_803637.1 CDS PEPE_0084 NC_008525.1 91952 92698 D response regulator 91952..92698 Pediococcus pentosaceus ATCC 25745 4418802 YP_803638.1 CDS PEPE_0085 NC_008525.1 92932 95106 D bacteriocin-processing peptidase 92932..95106 Pediococcus pentosaceus ATCC 25745 4418803 YP_803639.1 CDS PEPE_0086 NC_008525.1 95389 96303 R ABC-type metal ion transport system, periplasmic component/surface adhesin complement(95389..96303) Pediococcus pentosaceus ATCC 25745 4418804 YP_803640.1 CDS PEPE_0087 NC_008525.1 96374 96493 R hypothetical protein complement(96374..96493) Pediococcus pentosaceus ATCC 25745 4418805 YP_803641.1 CDS PEPE_0088 NC_008525.1 97081 97473 D hypothetical protein 97081..97473 Pediococcus pentosaceus ATCC 25745 4418806 YP_803642.1 CDS PEPE_0089 NC_008525.1 97565 98083 R acetyltransferase complement(97565..98083) Pediococcus pentosaceus ATCC 25745 4418807 YP_803643.1 CDS PEPE_0090 NC_008525.1 98313 100124 D cation transport ATPase 98313..100124 Pediococcus pentosaceus ATCC 25745 4418808 YP_803644.1 CDS PEPE_0091 NC_008525.1 100382 101677 D cellobiose-specific PTS system IIC component 100382..101677 Pediococcus pentosaceus ATCC 25745 4418809 YP_803645.1 CDS PEPE_0092 NC_008525.1 101661 102524 D alpha/beta hydrolase superfamily protein 101661..102524 Pediococcus pentosaceus ATCC 25745 4418776 YP_803646.1 CDS PEPE_0093 NC_008525.1 102635 103285 R hypothetical protein complement(102635..103285) Pediococcus pentosaceus ATCC 25745 4418777 YP_803647.1 CDS PEPE_0094 NC_008525.1 103637 104524 R transcriptional regulator complement(103637..104524) Pediococcus pentosaceus ATCC 25745 4418778 YP_803648.1 CDS PEPE_0095 NC_008525.1 104739 105767 D dehydrogenase related protein 104739..105767 Pediococcus pentosaceus ATCC 25745 4418779 YP_803649.1 CDS PEPE_0096 NC_008525.1 105791 106765 D dehydrogenase related protein 105791..106765 Pediococcus pentosaceus ATCC 25745 4418780 YP_803650.1 CDS PEPE_0097 NC_008525.1 106781 107347 D acetyltransferase 106781..107347 Pediococcus pentosaceus ATCC 25745 4418781 YP_803651.1 CDS PEPE_0099 NC_008525.1 107735 108685 D alpha/beta fold family hydrolase 107735..108685 Pediococcus pentosaceus ATCC 25745 4418783 YP_803652.1 CDS PEPE_0100 NC_008525.1 108687 109649 D diacylglycerol kinase family protein 108687..109649 Pediococcus pentosaceus ATCC 25745 4418784 YP_803653.1 CDS PEPE_0101 NC_008525.1 109733 110560 D alpha/beta hydrolase superfamily protein 109733..110560 Pediococcus pentosaceus ATCC 25745 4418785 YP_803654.1 CDS PEPE_0102 NC_008525.1 110656 110976 D Thiol-disulfide isomerase and thioredoxin 110656..110976 Pediococcus pentosaceus ATCC 25745 4418786 YP_803655.1 CDS PEPE_0103 NC_008525.1 111311 112117 D C-di-GMP-specific phosphodiesterase 111311..112117 Pediococcus pentosaceus ATCC 25745 4418787 YP_803656.1 CDS PEPE_0104 NC_008525.1 112119 112622 D hypothetical protein 112119..112622 Pediococcus pentosaceus ATCC 25745 4418788 YP_803657.1 CDS PEPE_0105 NC_008525.1 112632 113957 D glycosyltransferase 112632..113957 Pediococcus pentosaceus ATCC 25745 4418789 YP_803658.1 CDS PEPE_0106 NC_008525.1 114093 115529 D Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 114093..115529 Pediococcus pentosaceus ATCC 25745 4418790 YP_803659.1 CDS PEPE_0107 NC_008525.1 115638 116438 D hypothetical protein 115638..116438 Pediococcus pentosaceus ATCC 25745 4418791 YP_803660.1 CDS PEPE_0111 NC_008525.1 121990 123141 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(121990..123141) Pediococcus pentosaceus ATCC 25745 4418745 YP_803661.1 CDS PEPE_0112 NC_008525.1 123321 124337 D oxidoreductase, aryl-alcohol dehydrogenase related 123321..124337 Pediococcus pentosaceus ATCC 25745 4418746 YP_803662.1 CDS PEPE_0113 NC_008525.1 124389 125561 D galactokinase 124389..125561 Pediococcus pentosaceus ATCC 25745 4418747 YP_803663.1 CDS PEPE_0114 NC_008525.1 125793 126374 D RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24-like 125793..126374 Pediococcus pentosaceus ATCC 25745 4418748 YP_803664.1 CDS PEPE_0115 NC_008525.1 126609 126827 D hypothetical protein 126609..126827 Pediococcus pentosaceus ATCC 25745 4418749 YP_803665.1 CDS PEPE_0116 NC_008525.1 127386 127526 D hypothetical protein 127386..127526 Pediococcus pentosaceus ATCC 25745 4418750 YP_803666.1 CDS PEPE_0117 NC_008525.1 128009 133039 D hypothetical protein 128009..133039 Pediococcus pentosaceus ATCC 25745 4418751 YP_803667.1 CDS PEPE_0118 NC_008525.1 133426 142479 D adhesion exoprotein 133426..142479 Pediococcus pentosaceus ATCC 25745 4418752 YP_803668.1 CDS PEPE_0119 NC_008525.1 142598 143326 R AraC-type DNA-binding transcriptional regulator complement(142598..143326) Pediococcus pentosaceus ATCC 25745 4418753 YP_803669.1 CDS PEPE_0120 NC_008525.1 144335 144580 R hypothetical protein complement(144335..144580) Pediococcus pentosaceus ATCC 25745 4418754 YP_803670.1 CDS PEPE_0121 NC_008525.1 144681 145412 R hypothetical protein complement(144681..145412) Pediococcus pentosaceus ATCC 25745 4418755 YP_803671.1 CDS PEPE_0122 NC_008525.1 145419 145868 R response regulator complement(145419..145868) Pediococcus pentosaceus ATCC 25745 4418756 YP_803672.1 CDS PEPE_0123 NC_008525.1 146028 147701 R hypothetical protein complement(146028..147701) Pediococcus pentosaceus ATCC 25745 4418757 YP_803673.1 CDS PEPE_0124 NC_008525.1 147790 149235 D hypothetical protein 147790..149235 Pediococcus pentosaceus ATCC 25745 4417122 YP_803674.1 CDS PEPE_0125 NC_008525.1 149572 150645 D Beta-lactamase class C related penicillin binding protein 149572..150645 Pediococcus pentosaceus ATCC 25745 4417123 YP_803675.1 CDS PEPE_0126 NC_008525.1 150668 151687 D glycosyltransferase 150668..151687 Pediococcus pentosaceus ATCC 25745 4417124 YP_803676.1 CDS PEPE_0127 NC_008525.1 151719 151883 D hypothetical protein 151719..151883 Pediococcus pentosaceus ATCC 25745 4417125 YP_803677.1 CDS PEPE_0128 NC_008525.1 151946 153076 D outer membrane protein 151946..153076 Pediococcus pentosaceus ATCC 25745 4417126 YP_803678.1 CDS PEPE_0129 NC_008525.1 153181 154617 R major facilitator superfamily permease complement(153181..154617) Pediococcus pentosaceus ATCC 25745 4417127 YP_803679.1 CDS PEPE_0130 NC_008525.1 154851 155897 R aspartate semialdehyde dehydrogenase complement(154851..155897) Pediococcus pentosaceus ATCC 25745 4417128 YP_803680.1 CDS PEPE_0131 NC_008525.1 155899 157080 R aromatic amino acid aminotransferase complement(155899..157080) Pediococcus pentosaceus ATCC 25745 4417129 YP_803681.1 CDS PEPE_0132 NC_008525.1 157093 157857 R dihydrodipicolinate reductase complement(157093..157857) Pediococcus pentosaceus ATCC 25745 4417130 YP_803682.1 CDS PEPE_0133 NC_008525.1 157873 158772 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(157873..158772) Pediococcus pentosaceus ATCC 25745 4417131 YP_803683.1 CDS PEPE_0134 NC_008525.1 158775 159929 R metal-dependent amidase/aminoacylase/carboxypeptidase complement(158775..159929) Pediococcus pentosaceus ATCC 25745 4417132 YP_803684.1 CDS PEPE_0135 NC_008525.1 159943 160653 R tetrahydrodipicolinate N-succinyltransferase complement(159943..160653) Pediococcus pentosaceus ATCC 25745 4417133 YP_803685.1 CDS PEPE_0136 NC_008525.1 160674 161966 R diaminopimelate decarboxylase complement(160674..161966) Pediococcus pentosaceus ATCC 25745 4417134 YP_803686.1 CDS PEPE_0137 NC_008525.1 162431 163810 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 162431..163810 Pediococcus pentosaceus ATCC 25745 4417135 YP_803687.1 CDS PEPE_0138 NC_008525.1 163810 164799 D diaminopimelate epimerase 163810..164799 Pediococcus pentosaceus ATCC 25745 4417136 YP_803688.1 CDS PEPE_0139 NC_008525.1 164945 166147 D cyanate permease 164945..166147 Pediococcus pentosaceus ATCC 25745 4417137 YP_803689.1 CDS PEPE_0140 NC_008525.1 166186 166932 R transcriptional regulator complement(166186..166932) Pediococcus pentosaceus ATCC 25745 4417138 YP_803690.1 CDS PEPE_0141 NC_008525.1 167049 167984 D fructose-1-phosphate kinase-like protein 167049..167984 Pediococcus pentosaceus ATCC 25745 4418655 YP_803691.1 CDS PEPE_0142 NC_008525.1 167981 169870 D phosphotransferase system fructose-specific component IIB 167981..169870 Pediococcus pentosaceus ATCC 25745 4418656 YP_803692.1 CDS PEPE_0143 NC_008525.1 169986 170978 D catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 169986..170978 Pediococcus pentosaceus ATCC 25745 4418657 YP_803693.1 CDS PEPE_0144 NC_008525.1 171149 173065 D fructose-1,6-bisphosphatase 171149..173065 Pediococcus pentosaceus ATCC 25745 4418658 YP_803694.1 CDS PEPE_0145 NC_008525.1 173055 173960 R Mg2+ and Co2+ transporter complement(173055..173960) Pediococcus pentosaceus ATCC 25745 4418659 YP_803695.1 CDS PEPE_0146 NC_008525.1 174070 174963 D Short-chain alcohol dehydrogenase 174070..174963 Pediococcus pentosaceus ATCC 25745 4418660 YP_803696.1 CDS PEPE_0147 NC_008525.1 174976 175149 D hypothetical protein 174976..175149 Pediococcus pentosaceus ATCC 25745 4418661 YP_803697.1 CDS PEPE_0148 NC_008525.1 175229 176359 R hypothetical protein complement(175229..176359) Pediococcus pentosaceus ATCC 25745 4418662 YP_803698.1 CDS PEPE_0149 NC_008525.1 176461 177264 R hypothetical protein complement(176461..177264) Pediococcus pentosaceus ATCC 25745 4418663 YP_803699.1 CDS PEPE_0150 NC_008525.1 177639 178316 D Mg2+ transporter 177639..178316 Pediococcus pentosaceus ATCC 25745 4418664 YP_803700.1 CDS PEPE_0151 NC_008525.1 178383 179195 R RpiR family transcriptional regulator complement(178383..179195) Pediococcus pentosaceus ATCC 25745 4418665 YP_803701.1 CDS PEPE_0152 NC_008525.1 179297 179986 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(179297..179986) Pediococcus pentosaceus ATCC 25745 4418666 YP_803702.1 CDS PEPE_0153 NC_008525.1 180274 181608 R pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme complement(180274..181608) Pediococcus pentosaceus ATCC 25745 4418667 YP_803703.1 CDS PEPE_0154 NC_008525.1 181775 182623 R AraC family transcriptional regulator complement(181775..182623) Pediococcus pentosaceus ATCC 25745 4418668 YP_803704.1 CDS PEPE_0155 NC_008525.1 182776 184758 D hypothetical protein 182776..184758 Pediococcus pentosaceus ATCC 25745 4418669 YP_803705.1 CDS PEPE_0156 NC_008525.1 184771 186117 D Na+/xyloside symporter related transporter 184771..186117 Pediococcus pentosaceus ATCC 25745 4418670 YP_803706.1 CDS PEPE_0157 NC_008525.1 186391 187467 D GntR family transcriptional regulator 186391..187467 Pediococcus pentosaceus ATCC 25745 4418671 YP_803707.1 CDS PEPE_0158 NC_008525.1 187926 188645 R GntR family transcriptional regulator complement(187926..188645) Pediococcus pentosaceus ATCC 25745 4418672 YP_803708.1 CDS PEPE_0159 NC_008525.1 188929 189249 R acetyltransferase complement(188929..189249) Pediococcus pentosaceus ATCC 25745 4418638 YP_803709.1 CDS PEPE_0160 NC_008525.1 189260 190663 R C4-dicarboxylate transporter complement(189260..190663) Pediococcus pentosaceus ATCC 25745 4418639 YP_803710.1 CDS PEPE_0161 NC_008525.1 190675 191610 R inosine-uridine nucleoside N-ribohydrolase complement(190675..191610) Pediococcus pentosaceus ATCC 25745 4418640 YP_803711.1 CDS PEPE_0162 NC_008525.1 192107 193477 D D-xylose proton-symporter 192107..193477 Pediococcus pentosaceus ATCC 25745 4418641 YP_803712.1 CDS PEPE_0163 NC_008525.1 193498 195093 D L-ribulokinase (putative) 193498..195093 Pediococcus pentosaceus ATCC 25745 4418642 YP_803713.1 CDS araD NC_008525.1 195108 195836 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 195108..195836 Pediococcus pentosaceus ATCC 25745 4418643 YP_803714.1 CDS PEPE_0165 NC_008525.1 195866 197290 D catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 195866..197290 Pediococcus pentosaceus ATCC 25745 4418644 YP_803715.1 CDS PEPE_0166 NC_008525.1 197497 198603 D L-alanine dehydrogenase 197497..198603 Pediococcus pentosaceus ATCC 25745 4418645 YP_803716.1 CDS PEPE_0167 NC_008525.1 198620 199675 D catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic; threonine dehydratase 198620..199675 Pediococcus pentosaceus ATCC 25745 4418646 YP_803717.1 CDS PEPE_0168 NC_008525.1 199708 201627 D hypothetical protein 199708..201627 Pediococcus pentosaceus ATCC 25745 4418647 YP_803718.1 CDS PEPE_0169 NC_008525.1 201611 201973 D hypothetical protein 201611..201973 Pediococcus pentosaceus ATCC 25745 4418648 YP_803719.1 CDS PEPE_0170 NC_008525.1 201993 203420 D dipeptidase A 201993..203420 Pediococcus pentosaceus ATCC 25745 4418649 YP_803720.1 CDS PEPE_0171 NC_008525.1 203639 204853 D GntR family transcriptional regulator 203639..204853 Pediococcus pentosaceus ATCC 25745 4418650 YP_803721.1 CDS PEPE_0172 NC_008525.1 205015 205695 D N-acetylgalactosamine PTS, EIIC 205015..205695 Pediococcus pentosaceus ATCC 25745 4418651 YP_803722.1 CDS PEPE_0173 NC_008525.1 205685 206485 D catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; involved in N-acetylgalactosamine transport; PTS system N-acetylgalactosamine-specific transporter subunit IID 205685..206485 Pediococcus pentosaceus ATCC 25745 4418652 YP_803723.1 CDS PEPE_0174 NC_008525.1 206497 206919 D phosphotransferase system, mannose/fructose-specific component IIA 206497..206919 Pediococcus pentosaceus ATCC 25745 4418653 YP_803724.1 CDS PEPE_0175 NC_008525.1 207256 207993 D GntR family transcriptional regulator 207256..207993 Pediococcus pentosaceus ATCC 25745 4418654 YP_803725.1 CDS PEPE_0176 NC_008525.1 207980 208672 D GntR family transcriptional regulator 207980..208672 Pediococcus pentosaceus ATCC 25745 4418620 YP_803726.1 CDS PEPE_0178 NC_008525.1 209176 210015 D mannose-specific PTS system component IIC 209176..210015 Pediococcus pentosaceus ATCC 25745 4418622 YP_803727.1 CDS PEPE_0179 NC_008525.1 209996 210817 D mannose-specific PTS system component IID 209996..210817 Pediococcus pentosaceus ATCC 25745 4418623 YP_803728.1 CDS PEPE_0182 NC_008525.1 213441 214562 R Zn-dependent alcohol dehydrogenase complement(213441..214562) Pediococcus pentosaceus ATCC 25745 4418626 YP_803729.1 CDS PEPE_0183 NC_008525.1 214745 215602 D transcriptional regulator/sugar kinase 214745..215602 Pediococcus pentosaceus ATCC 25745 4418627 YP_803730.1 CDS PEPE_0184 NC_008525.1 215704 217986 R catalyzes the transfer of alpha-xylosyl residue from alpha-xyloside to xylose, glucose, mannose, fructose, maltose, isomaltose, nigerose, kojibiose, sucrose, and trehalose; shows higher activity against alpha-xylosyl fluoride, isoprimeverose (6-O-alpha-xylopyranosyl-glucopyranose), and alpha-xyloside in xyloglucan oligosaccharides; alpha-xylosidase YicI complement(215704..217986) Pediococcus pentosaceus ATCC 25745 4418628 YP_803731.1 CDS PEPE_0185 NC_008525.1 218212 219597 D Na+/xyloside symporter related transporter 218212..219597 Pediococcus pentosaceus ATCC 25745 4418629 YP_803732.1 CDS PEPE_0186 NC_008525.1 219621 220772 D transcriptional regulator/sugar kinase, xylose operon regulator 219621..220772 Pediococcus pentosaceus ATCC 25745 4418630 YP_803733.1 CDS PEPE_0187 NC_008525.1 220787 222130 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 220787..222130 Pediococcus pentosaceus ATCC 25745 4418631 YP_803734.1 CDS PEPE_0188 NC_008525.1 222180 223685 D xylulokinase 222180..223685 Pediococcus pentosaceus ATCC 25745 4418632 YP_803735.1 CDS PEPE_0189 NC_008525.1 223883 224917 D catalyzes the formation of putrescine from carbamoyl-putrescine during agmatine degradation; putrescine carbamoyltransferase 223883..224917 Pediococcus pentosaceus ATCC 25745 4418633 YP_803736.1 CDS PEPE_0190 NC_008525.1 224962 226347 D amino acid transporter 224962..226347 Pediococcus pentosaceus ATCC 25745 4418634 YP_803737.1 CDS PEPE_0191 NC_008525.1 226344 227438 D catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 226344..227438 Pediococcus pentosaceus ATCC 25745 4418635 YP_803738.1 CDS PEPE_0192 NC_008525.1 227517 228461 D catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 227517..228461 Pediococcus pentosaceus ATCC 25745 4418636 YP_803739.1 CDS PEPE_0193 NC_008525.1 228491 229582 D peptidylarginine deiminase-like protein 228491..229582 Pediococcus pentosaceus ATCC 25745 4418637 YP_803740.1 CDS PEPE_0194 NC_008525.1 229595 230176 D transcriptional regulator 229595..230176 Pediococcus pentosaceus ATCC 25745 4418603 YP_803741.1 CDS PEPE_0195 NC_008525.1 230570 233311 D transcriptional regulator 230570..233311 Pediococcus pentosaceus ATCC 25745 4418604 YP_803742.1 CDS PEPE_0197 NC_008525.1 234307 235092 D mannose-specific PTS system component IIC 234307..235092 Pediococcus pentosaceus ATCC 25745 4418606 YP_803743.1 CDS PEPE_0198 NC_008525.1 235107 235940 D mannose-specific PTS system component IID 235107..235940 Pediococcus pentosaceus ATCC 25745 4418607 YP_803744.1 CDS PEPE_0201 NC_008525.1 237847 238842 D LacI family transcription regulator 237847..238842 Pediococcus pentosaceus ATCC 25745 4418610 YP_803745.1 CDS PEPE_0202 NC_008525.1 238990 240018 D aldose 1-epimerase 238990..240018 Pediococcus pentosaceus ATCC 25745 4418611 YP_803746.1 CDS PEPE_0203 NC_008525.1 240309 242255 D Na+/xyloside symporter related transporter 240309..242255 Pediococcus pentosaceus ATCC 25745 4418612 YP_803747.1 CDS PEPE_0204 NC_008525.1 242363 243322 R Beta-galactosidase complement(242363..243322) Pediococcus pentosaceus ATCC 25745 4418613 YP_803748.1 CDS PEPE_0205 NC_008525.1 243306 245186 R Beta-galactosidase complement(243306..245186) Pediococcus pentosaceus ATCC 25745 4418614 YP_803749.1 CDS PEPE_0206 NC_008525.1 245467 246630 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 245467..246630 Pediococcus pentosaceus ATCC 25745 4418615 YP_803750.1 CDS PEPE_0207 NC_008525.1 246687 247691 D UDP-galactose 4-epimerase 246687..247691 Pediococcus pentosaceus ATCC 25745 4418616 YP_803751.1 CDS PEPE_0208 NC_008525.1 247691 249151 D catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 247691..249151 Pediococcus pentosaceus ATCC 25745 4418617 YP_803752.1 CDS fumC NC_008525.1 249343 250725 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 249343..250725 Pediococcus pentosaceus ATCC 25745 4418618 YP_803753.1 CDS PEPE_0210 NC_008525.1 250738 252156 D di- and tricarboxylate transporter 250738..252156 Pediococcus pentosaceus ATCC 25745 4418619 YP_803754.1 CDS PEPE_0211 NC_008525.1 252255 252839 D peptidyl-prolyl cis-trans isomerase 252255..252839 Pediococcus pentosaceus ATCC 25745 4418585 YP_803755.1 CDS PEPE_0212 NC_008525.1 252880 253734 R alpha-beta hydrolase family esterase complement(252880..253734) Pediococcus pentosaceus ATCC 25745 4418586 YP_803756.1 CDS PEPE_0213 NC_008525.1 253883 255067 R major facilitator superfamily permease complement(253883..255067) Pediococcus pentosaceus ATCC 25745 4418587 YP_803757.1 CDS PEPE_0214 NC_008525.1 255222 255731 D small molecule binding protein 255222..255731 Pediococcus pentosaceus ATCC 25745 4418588 YP_803758.1 CDS PEPE_0215 NC_008525.1 255795 255953 D hypothetical protein 255795..255953 Pediococcus pentosaceus ATCC 25745 4418589 YP_803759.1 CDS PEPE_0216 NC_008525.1 256037 257686 R lipopolysaccharide biosynthesis glycosyltransferase complement(256037..257686) Pediococcus pentosaceus ATCC 25745 4418590 YP_803760.1 CDS PEPE_0217 NC_008525.1 257866 258150 D hypothetical protein 257866..258150 Pediococcus pentosaceus ATCC 25745 4418591 YP_803761.1 CDS PEPE_0218 NC_008525.1 258293 259213 R lactate dehydrogenase complement(258293..259213) Pediococcus pentosaceus ATCC 25745 4418592 YP_803762.1 CDS PEPE_0219 NC_008525.1 259285 259656 R hypothetical protein complement(259285..259656) Pediococcus pentosaceus ATCC 25745 4418593 YP_803763.1 CDS PEPE_0220 NC_008525.1 259668 260687 R hypothetical protein complement(259668..260687) Pediococcus pentosaceus ATCC 25745 4418594 YP_803764.1 CDS PEPE_0221 NC_008525.1 260817 261821 R aldose 1-epimerase complement(260817..261821) Pediococcus pentosaceus ATCC 25745 4418595 YP_803765.1 CDS PEPE_0222 NC_008525.1 261970 262239 D SSU ribosomal protein S14P 261970..262239 Pediococcus pentosaceus ATCC 25745 4418596 YP_803766.1 CDS PEPE_0223 NC_008525.1 262331 263314 D DMT family permease 262331..263314 Pediococcus pentosaceus ATCC 25745 4418597 YP_803767.1 CDS PEPE_0224 NC_008525.1 263469 265070 D glycosyltransferase 263469..265070 Pediococcus pentosaceus ATCC 25745 4418598 YP_803768.1 CDS PEPE_0225 NC_008525.1 265070 266569 D glycosyltransferase 265070..266569 Pediococcus pentosaceus ATCC 25745 4418599 YP_803769.1 CDS PEPE_0226 NC_008525.1 266627 267232 R oxidoreductase complement(266627..267232) Pediococcus pentosaceus ATCC 25745 4418600 YP_803770.1 CDS PEPE_0227 NC_008525.1 267390 268157 D hypothetical protein 267390..268157 Pediococcus pentosaceus ATCC 25745 4418601 YP_803771.1 CDS PEPE_0228 NC_008525.1 268227 269036 R hydroxymethylpyrimidine/phosphomethylpyrimidine kinase complement(268227..269036) Pediococcus pentosaceus ATCC 25745 4418602 YP_803772.1 CDS PEPE_0229 NC_008525.1 269091 270134 R hypothetical protein complement(269091..270134) Pediococcus pentosaceus ATCC 25745 4418572 YP_803773.1 CDS PEPE_0230 NC_008525.1 270310 271401 D hypothetical protein 270310..271401 Pediococcus pentosaceus ATCC 25745 4418573 YP_803774.1 CDS PEPE_0231 NC_008525.1 271667 272977 D cellobiose-specific PTS system IIC component 271667..272977 Pediococcus pentosaceus ATCC 25745 4418574 YP_803775.1 CDS PEPE_0232 NC_008525.1 273101 273559 D hypothetical protein 273101..273559 Pediococcus pentosaceus ATCC 25745 4418575 YP_803776.1 CDS PEPE_0233 NC_008525.1 273665 274303 D saccharopine dehydrogenase related protein 273665..274303 Pediococcus pentosaceus ATCC 25745 4418576 YP_803777.1 CDS PEPE_0234 NC_008525.1 274447 275844 D divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 274447..275844 Pediococcus pentosaceus ATCC 25745 4418577 YP_803778.1 CDS PEPE_0235 NC_008525.1 276150 277403 D tyrosyl-tRNA synthetase 276150..277403 Pediococcus pentosaceus ATCC 25745 4418578 YP_803779.1 CDS PEPE_0240 NC_008525.1 283174 284538 D purine-cytosine permease related protein 283174..284538 Pediococcus pentosaceus ATCC 25745 4418583 YP_803780.1 CDS PEPE_0241 NC_008525.1 284528 285760 D dihydroorotase 284528..285760 Pediococcus pentosaceus ATCC 25745 4418584 YP_803781.1 CDS PEPE_0242 NC_008525.1 285855 287384 D ABC-type proline/glycine betaine transport system, permease and substrate binding protein 285855..287384 Pediococcus pentosaceus ATCC 25745 4418554 YP_803782.1 CDS PEPE_0243 NC_008525.1 287384 288349 D ABC-type proline/glycine betaine transport system, ATPase component 287384..288349 Pediococcus pentosaceus ATCC 25745 4418555 YP_803783.1 CDS PEPE_0244 NC_008525.1 288364 289698 D pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme 288364..289698 Pediococcus pentosaceus ATCC 25745 4418556 YP_803784.1 CDS PEPE_0245 NC_008525.1 289755 290915 D Kef-type K+ transport system, membrane component 289755..290915 Pediococcus pentosaceus ATCC 25745 4418557 YP_803785.1 CDS PEPE_0246 NC_008525.1 291055 294480 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 291055..294480 Pediococcus pentosaceus ATCC 25745 4418558 YP_803786.1 CDS PEPE_0247 NC_008525.1 294485 295660 D aminotransferase 294485..295660 Pediococcus pentosaceus ATCC 25745 4418559 YP_803787.1 CDS PEPE_0248 NC_008525.1 295714 296439 R hypothetical protein complement(295714..296439) Pediococcus pentosaceus ATCC 25745 4418560 YP_803788.1 CDS PEPE_0249 NC_008525.1 296579 297463 D LysR family transcriptional regulator 296579..297463 Pediococcus pentosaceus ATCC 25745 4418561 YP_803789.1 CDS PEPE_0250 NC_008525.1 297576 299051 D 3-polyprenyl-4-hydroxybenzoate decarboxylase related decarboxylase 297576..299051 Pediococcus pentosaceus ATCC 25745 4418562 YP_803790.1 CDS PEPE_0251 NC_008525.1 299073 299669 D 3-polyprenyl-4-hydroxybenzoate decarboxylase 299073..299669 Pediococcus pentosaceus ATCC 25745 4418563 YP_803791.1 CDS PEPE_0252 NC_008525.1 299641 300084 D hypothetical protein 299641..300084 Pediococcus pentosaceus ATCC 25745 4418564 YP_803792.1 CDS PEPE_0253 NC_008525.1 300239 301174 D NADPH:quinone reductase related Zn-dependent oxidoreductase 300239..301174 Pediococcus pentosaceus ATCC 25745 4418565 YP_803793.1 CDS PEPE_0254 NC_008525.1 301301 302239 D hypothetical protein 301301..302239 Pediococcus pentosaceus ATCC 25745 4418566 YP_803794.1 CDS PEPE_0255 NC_008525.1 302256 304559 R superfamily I DNA/RNA helicase complement(302256..304559) Pediococcus pentosaceus ATCC 25745 4418567 YP_803795.1 CDS PEPE_0256 NC_008525.1 304896 305924 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase II 304896..305924 Pediococcus pentosaceus ATCC 25745 4418568 YP_803796.1 CDS PEPE_0257 NC_008525.1 306083 307012 D exopolyphosphatase 306083..307012 Pediococcus pentosaceus ATCC 25745 4418569 YP_803797.1 CDS PEPE_0258 NC_008525.1 307018 308250 D 3-hydroxy-3-methylglutaryl-coenzyme A reductase 307018..308250 Pediococcus pentosaceus ATCC 25745 4418570 YP_803798.1 CDS PEPE_0259 NC_008525.1 308237 309193 D hypothetical protein 308237..309193 Pediococcus pentosaceus ATCC 25745 4418571 YP_803799.1 CDS PEPE_0260 NC_008525.1 309243 309650 R hypothetical protein complement(309243..309650) Pediococcus pentosaceus ATCC 25745 4418537 YP_803800.1 CDS PEPE_0261 NC_008525.1 309719 310543 R XRE family transcriptional regulator complement(309719..310543) Pediococcus pentosaceus ATCC 25745 4418538 YP_803801.1 CDS PEPE_0262 NC_008525.1 310608 310796 R putative stress-responsive transcriptional regulator complement(310608..310796) Pediococcus pentosaceus ATCC 25745 4418539 YP_803803.1 CDS PEPE_0264 NC_008525.1 310941 311606 D hypothetical protein 310941..311606 Pediococcus pentosaceus ATCC 25745 4418541 YP_803804.1 CDS PEPE_0265 NC_008525.1 311675 312523 D hypothetical protein 311675..312523 Pediococcus pentosaceus ATCC 25745 4418542 YP_803805.1 CDS PEPE_0266 NC_008525.1 312622 314643 D methionyl-tRNA synthetase 312622..314643 Pediococcus pentosaceus ATCC 25745 4418543 YP_803806.1 CDS PEPE_0267 NC_008525.1 314719 315501 D Mg-dependent DNase 314719..315501 Pediococcus pentosaceus ATCC 25745 4418544 YP_803807.1 CDS PEPE_0268 NC_008525.1 315488 316048 D ribonuclease M5 315488..316048 Pediococcus pentosaceus ATCC 25745 4418545 YP_803808.1 CDS PEPE_0269 NC_008525.1 316041 316934 D dimethyladenosine transferase 316041..316934 Pediococcus pentosaceus ATCC 25745 4418546 YP_803809.1 CDS PEPE_0270 NC_008525.1 317061 317363 D hypothetical protein 317061..317363 Pediococcus pentosaceus ATCC 25745 4418547 YP_803810.1 CDS ipk NC_008525.1 317481 318332 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 317481..318332 Pediococcus pentosaceus ATCC 25745 4418548 YP_803811.1 CDS PEPE_0272 NC_008525.1 318342 318854 D transcriptional regulator 318342..318854 Pediococcus pentosaceus ATCC 25745 4418549 YP_803812.1 CDS PEPE_0273 NC_008525.1 318963 319436 D universal stress protein UspA-like nucleotide-binding protein 318963..319436 Pediococcus pentosaceus ATCC 25745 4418550 YP_803813.1 CDS PEPE_0274 NC_008525.1 319465 319914 D universal stress protein UspA-like nucleotide-binding protein 319465..319914 Pediococcus pentosaceus ATCC 25745 4418551 YP_803814.1 CDS PEPE_0275 NC_008525.1 320054 321493 D major facilitator superfamily permease 320054..321493 Pediococcus pentosaceus ATCC 25745 4418552 YP_803815.1 CDS PEPE_0276 NC_008525.1 321556 322725 R 1,3-propanediol dehydrogenase complement(321556..322725) Pediococcus pentosaceus ATCC 25745 4418553 YP_803816.1 CDS PEPE_0277 NC_008525.1 322916 323674 R ABC-type uncharacterized transport system, ATPase component complement(322916..323674) Pediococcus pentosaceus ATCC 25745 4418673 YP_803817.1 CDS PEPE_0278 NC_008525.1 323676 324587 R ribose/xylose/arabinose/galactoside ABC-type transporter permease complement(323676..324587) Pediococcus pentosaceus ATCC 25745 4418674 YP_803818.1 CDS PEPE_0279 NC_008525.1 324584 325579 R ABC-type uncharacterized transport system, periplasmic component complement(324584..325579) Pediococcus pentosaceus ATCC 25745 4418675 YP_803819.1 CDS PEPE_0280 NC_008525.1 325915 326610 R GntR family transcriptional regulator complement(325915..326610) Pediococcus pentosaceus ATCC 25745 4418676 YP_803820.1 CDS PEPE_0281 NC_008525.1 326777 327088 D cellobiose-specific PTS system IIB component 326777..327088 Pediococcus pentosaceus ATCC 25745 4418677 YP_803821.1 CDS PEPE_0282 NC_008525.1 327168 327491 D cellobiose-specific PTS system IIA component 327168..327491 Pediococcus pentosaceus ATCC 25745 4418678 YP_803822.1 CDS PEPE_0283 NC_008525.1 327507 328952 D Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 327507..328952 Pediococcus pentosaceus ATCC 25745 4418679 YP_803823.1 CDS PEPE_0284 NC_008525.1 328995 329750 D transcriptional regulator 328995..329750 Pediococcus pentosaceus ATCC 25745 4418680 YP_803824.1 CDS PEPE_0285 NC_008525.1 329881 331221 D NAD(FAD)-dependent dehydrogenase 329881..331221 Pediococcus pentosaceus ATCC 25745 4418681 YP_803825.1 CDS PEPE_0286 NC_008525.1 331253 332032 D acetoin reductase 331253..332032 Pediococcus pentosaceus ATCC 25745 4418682 YP_803826.1 CDS PEPE_0287 NC_008525.1 332076 332660 R uracil-DNA glycosylase complement(332076..332660) Pediococcus pentosaceus ATCC 25745 4418683 YP_803827.1 CDS PEPE_0288 NC_008525.1 332784 333956 R acetyltransferase complement(332784..333956) Pediococcus pentosaceus ATCC 25745 4418684 YP_803828.1 CDS PEPE_0289 NC_008525.1 334099 334986 D ABC-type metal ion transport system, periplasmic component/surface adhesin 334099..334986 Pediococcus pentosaceus ATCC 25745 4418685 YP_803829.1 CDS PEPE_0290 NC_008525.1 334986 335666 D ABC-type Mn/Zn transport system, ATPase component 334986..335666 Pediococcus pentosaceus ATCC 25745 4418686 YP_803830.1 CDS PEPE_0291 NC_008525.1 335659 336447 D ABC-type Mn2+/Zn2+ transport system, permease component 335659..336447 Pediococcus pentosaceus ATCC 25745 4418687 YP_803831.1 CDS PEPE_0292 NC_008525.1 336603 337439 D pur operon repressor 336603..337439 Pediococcus pentosaceus ATCC 25745 4418688 YP_803832.1 CDS glmU NC_008525.1 337445 338848 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 337445..338848 Pediococcus pentosaceus ATCC 25745 4418689 YP_803833.1 CDS PEPE_0294 NC_008525.1 338953 339525 R Rossmann fold nucleotide-binding protein complement(338953..339525) Pediococcus pentosaceus ATCC 25745 4418690 YP_803834.1 CDS PEPE_0295 NC_008525.1 339882 340862 D phosphoribosylpyrophosphate synthetase 339882..340862 Pediococcus pentosaceus ATCC 25745 4418506 YP_803835.1 CDS PEPE_0296 NC_008525.1 341087 342148 D hypothetical protein 341087..342148 Pediococcus pentosaceus ATCC 25745 4418507 YP_803836.1 CDS PEPE_0297 NC_008525.1 342914 343252 R hypothetical protein complement(342914..343252) Pediococcus pentosaceus ATCC 25745 4418508 YP_803837.1 CDS PEPE_0298 NC_008525.1 343324 343743 R hypothetical protein complement(343324..343743) Pediococcus pentosaceus ATCC 25745 4418509 YP_803838.1 CDS PEPE_0299 NC_008525.1 343903 344553 D glycerol uptake facilitator related permease (major Intrinsic protein family) 343903..344553 Pediococcus pentosaceus ATCC 25745 4418510 YP_803839.1 CDS PEPE_0300 NC_008525.1 344617 345369 R Kef-type K+ transporter NAD-binding component complement(344617..345369) Pediococcus pentosaceus ATCC 25745 4418511 YP_803840.1 CDS PEPE_0301 NC_008525.1 345478 346449 D asparaginase 345478..346449 Pediococcus pentosaceus ATCC 25745 4418512 YP_803841.1 CDS PEPE_0302 NC_008525.1 346504 348417 D neutral endopeptidase 346504..348417 Pediococcus pentosaceus ATCC 25745 4418513 YP_803842.1 CDS PEPE_0303 NC_008525.1 348602 349909 D xanthine/uracil/vitamin C permease 348602..349909 Pediococcus pentosaceus ATCC 25745 4418514 YP_803843.1 CDS PEPE_0304 NC_008525.1 350024 350842 D RNase HI 350024..350842 Pediococcus pentosaceus ATCC 25745 4418515 YP_803844.1 CDS PEPE_0305 NC_008525.1 350829 351347 R hypothetical protein complement(350829..351347) Pediococcus pentosaceus ATCC 25745 4418516 YP_803845.1 CDS PEPE_0306 NC_008525.1 351460 351651 R hypothetical protein complement(351460..351651) Pediococcus pentosaceus ATCC 25745 4418517 YP_803846.1 CDS PEPE_0307 NC_008525.1 351754 352608 R transcriptional regulator complement(351754..352608) Pediococcus pentosaceus ATCC 25745 4418518 YP_803847.1 CDS PEPE_0308 NC_008525.1 352723 353748 D hypothetical protein 352723..353748 Pediococcus pentosaceus ATCC 25745 4418519 YP_803848.1 CDS PEPE_0309 NC_008525.1 353808 354743 R AEC family permease complement(353808..354743) Pediococcus pentosaceus ATCC 25745 4418520 YP_803849.1 CDS PEPE_0310 NC_008525.1 354837 355166 D hypothetical protein 354837..355166 Pediococcus pentosaceus ATCC 25745 4418521 YP_803850.1 CDS PEPE_0311 NC_008525.1 355183 356004 D HAD superfamily hydrolase 355183..356004 Pediococcus pentosaceus ATCC 25745 4418522 YP_803851.1 CDS pyrB NC_008525.1 357057 357983 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 357057..357983 Pediococcus pentosaceus ATCC 25745 4418489 YP_803852.1 CDS PEPE_0314 NC_008525.1 357983 359260 D dihydroorotase 357983..359260 Pediococcus pentosaceus ATCC 25745 4418490 YP_803853.1 CDS PEPE_0315 NC_008525.1 359267 360352 D carbamoyl-phosphate synthase small subunit 359267..360352 Pediococcus pentosaceus ATCC 25745 4418491 YP_803854.1 CDS PEPE_0316 NC_008525.1 360355 363528 D carbamoyl-phosphate synthase large subunit 360355..363528 Pediococcus pentosaceus ATCC 25745 4418492 YP_803855.1 CDS PEPE_0317 NC_008525.1 363540 364454 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 363540..364454 Pediococcus pentosaceus ATCC 25745 4418493 YP_803856.1 CDS PEPE_0318 NC_008525.1 364469 365857 D succinate dehydrogenase/fumarate reductase, flavoprotein subunit 364469..365857 Pediococcus pentosaceus ATCC 25745 4418494 YP_803857.1 CDS PEPE_0319 NC_008525.1 366029 367156 D hypothetical protein 366029..367156 Pediococcus pentosaceus ATCC 25745 4418495 YP_803858.1 CDS PEPE_0320 NC_008525.1 367170 368657 D hypothetical protein 367170..368657 Pediococcus pentosaceus ATCC 25745 4418496 YP_803859.1 CDS PEPE_0321 NC_008525.1 368650 370200 D hypothetical protein 368650..370200 Pediococcus pentosaceus ATCC 25745 4418497 YP_803860.1 CDS PEPE_0322 NC_008525.1 370222 371466 D glycosyltransferase 370222..371466 Pediococcus pentosaceus ATCC 25745 4418498 YP_803861.1 CDS PEPE_0323 NC_008525.1 371498 373531 D glycosyl transferase 371498..373531 Pediococcus pentosaceus ATCC 25745 4418499 YP_803862.1 CDS PEPE_0324 NC_008525.1 373515 374369 D GGDEF domain-containing protein 373515..374369 Pediococcus pentosaceus ATCC 25745 4418500 YP_803863.1 CDS PEPE_0325 NC_008525.1 374427 374834 R hypothetical protein complement(374427..374834) Pediococcus pentosaceus ATCC 25745 4418501 YP_803864.1 CDS PEPE_0326 NC_008525.1 375009 375389 D lactoylglutathione lyase related lyase 375009..375389 Pediococcus pentosaceus ATCC 25745 4418502 YP_803865.1 CDS PEPE_0327 NC_008525.1 375538 376104 D TetR family transcriptional regulator 375538..376104 Pediococcus pentosaceus ATCC 25745 4418503 YP_803866.1 CDS PEPE_0328 NC_008525.1 376153 378810 D hypothetical protein 376153..378810 Pediococcus pentosaceus ATCC 25745 4418504 YP_803867.1 CDS PEPE_0329 NC_008525.1 378913 379536 D putative NADH-flavin reductase 378913..379536 Pediococcus pentosaceus ATCC 25745 4418505 YP_803868.1 CDS PEPE_0330 NC_008525.1 379605 379835 R hypothetical protein complement(379605..379835) Pediococcus pentosaceus ATCC 25745 4418471 YP_803869.1 CDS PEPE_0331 NC_008525.1 379911 380651 R peptide ABC transporter ATPase complement(379911..380651) Pediococcus pentosaceus ATCC 25745 4418472 YP_803870.1 CDS PEPE_0332 NC_008525.1 380672 381682 R ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component complement(380672..381682) Pediococcus pentosaceus ATCC 25745 4418473 YP_803871.1 CDS PEPE_0333 NC_008525.1 381669 382451 R ABC-type nitrate/sulfonate/bicarbonate transport system, permease component complement(381669..382451) Pediococcus pentosaceus ATCC 25745 4418474 YP_803872.1 CDS PEPE_0334 NC_008525.1 382414 382710 R hypothetical protein complement(382414..382710) Pediococcus pentosaceus ATCC 25745 4418475 YP_803873.1 CDS PEPE_0335 NC_008525.1 383043 383753 D glucosamine-6-phosphate isomerase 383043..383753 Pediococcus pentosaceus ATCC 25745 4418476 YP_803874.1 CDS PEPE_0336 NC_008525.1 384056 385255 D acetate kinase 384056..385255 Pediococcus pentosaceus ATCC 25745 4418477 YP_803875.1 CDS eutD NC_008525.1 385259 386230 D in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 385259..386230 Pediococcus pentosaceus ATCC 25745 4418478 YP_803876.1 CDS PEPE_0338 NC_008525.1 386265 386705 R Fe2+/Zn2+ uptake regulation protein complement(386265..386705) Pediococcus pentosaceus ATCC 25745 4418479 YP_803877.1 CDS PEPE_0339 NC_008525.1 386865 388286 D major facilitator superfamily permease 386865..388286 Pediococcus pentosaceus ATCC 25745 4418480 YP_803878.1 CDS PEPE_0340 NC_008525.1 388300 389202 D ribonuclease BN-like family protein 388300..389202 Pediococcus pentosaceus ATCC 25745 4418481 YP_803879.1 CDS PEPE_0341 NC_008525.1 389244 389708 R hypothetical protein complement(389244..389708) Pediococcus pentosaceus ATCC 25745 4418482 YP_803880.1 CDS PEPE_0342 NC_008525.1 389784 390563 R protein tyrosine phosphatase complement(389784..390563) Pediococcus pentosaceus ATCC 25745 4418483 YP_803881.1 CDS PEPE_0343 NC_008525.1 390861 391652 R protein tyrosine phosphatase complement(390861..391652) Pediococcus pentosaceus ATCC 25745 4418484 YP_803882.1 CDS PEPE_0344 NC_008525.1 391667 392173 R has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; flavoprotein NrdI complement(391667..392173) Pediococcus pentosaceus ATCC 25745 4418485 YP_803883.1 CDS PEPE_0345 NC_008525.1 392323 393123 D HAD superfamily hydrolase 392323..393123 Pediococcus pentosaceus ATCC 25745 4418486 YP_803884.1 CDS PEPE_0346 NC_008525.1 393167 394552 R hemolysin-like protein complement(393167..394552) Pediococcus pentosaceus ATCC 25745 4418487 YP_803885.1 CDS PEPE_0347 NC_008525.1 394712 395650 D oxidoreductase 394712..395650 Pediococcus pentosaceus ATCC 25745 4418453 YP_803886.1 CDS PEPE_0348 NC_008525.1 395702 396331 R hypothetical protein complement(395702..396331) Pediococcus pentosaceus ATCC 25745 4418454 YP_803887.1 CDS PEPE_0349 NC_008525.1 396352 396684 R hypothetical protein complement(396352..396684) Pediococcus pentosaceus ATCC 25745 4418455 YP_803888.1 CDS PEPE_0350 NC_008525.1 396830 397360 D BS_ykrK family protein 396830..397360 Pediococcus pentosaceus ATCC 25745 4418456 YP_803889.1 CDS PEPE_0351 NC_008525.1 397405 397905 R hypothetical protein complement(397405..397905) Pediococcus pentosaceus ATCC 25745 4418457 YP_803890.1 CDS PEPE_0352 NC_008525.1 398018 398740 D GntR family transcriptional regulator 398018..398740 Pediococcus pentosaceus ATCC 25745 4418458 YP_803891.1 CDS PEPE_0353 NC_008525.1 398927 401290 D putative phosphoketolase 398927..401290 Pediococcus pentosaceus ATCC 25745 4418459 YP_803892.1 CDS PEPE_0354 NC_008525.1 401348 402238 R pseudouridylate synthase, 23S RNA-specific complement(401348..402238) Pediococcus pentosaceus ATCC 25745 4418460 YP_803893.1 CDS PEPE_0355 NC_008525.1 402320 402772 R universal stress protein UspA-like nucleotide-binding protein complement(402320..402772) Pediococcus pentosaceus ATCC 25745 4418461 YP_803894.1 CDS PEPE_0356 NC_008525.1 403003 403866 R 3-hydroxyisobutyrate dehydrogenase complement(403003..403866) Pediococcus pentosaceus ATCC 25745 4418462 YP_803895.1 CDS PEPE_0357 NC_008525.1 403998 404468 D hypothetical protein 403998..404468 Pediococcus pentosaceus ATCC 25745 4418463 YP_803896.1 CDS PEPE_0358 NC_008525.1 404483 405148 D hypothetical protein 404483..405148 Pediococcus pentosaceus ATCC 25745 4418464 YP_803897.1 CDS PEPE_0359 NC_008525.1 405135 405365 D hypothetical protein 405135..405365 Pediococcus pentosaceus ATCC 25745 4418465 YP_803898.1 CDS PEPE_0360 NC_008525.1 405479 406120 R hypothetical protein complement(405479..406120) Pediococcus pentosaceus ATCC 25745 4418466 YP_803899.1 CDS PEPE_0361 NC_008525.1 406439 407290 R SAM-dependent methyltransferase complement(406439..407290) Pediococcus pentosaceus ATCC 25745 4418467 YP_803900.1 CDS PEPE_0362 NC_008525.1 407290 407712 R XRE family transcriptional regulator complement(407290..407712) Pediococcus pentosaceus ATCC 25745 4418468 YP_803901.1 CDS PEPE_0363 NC_008525.1 408015 408947 D alpha/beta fold family hydrolase 408015..408947 Pediococcus pentosaceus ATCC 25745 4418469 YP_803902.1 CDS PEPE_0364 NC_008525.1 409013 410989 R NhaP-type Na+/H+ and K+/H+ antiporter complement(409013..410989) Pediococcus pentosaceus ATCC 25745 4418470 YP_803903.1 CDS PEPE_0365 NC_008525.1 411079 412038 R inosine-uridine nucleoside N-ribohydrolase complement(411079..412038) Pediococcus pentosaceus ATCC 25745 4418436 YP_803904.1 CDS PEPE_0366 NC_008525.1 412199 413185 D thioredoxin reductase 412199..413185 Pediococcus pentosaceus ATCC 25745 4418437 YP_803905.1 CDS PEPE_0367 NC_008525.1 413239 415395 R phosphoglycerol transferase/alkaline phosphatase superfamily protein complement(413239..415395) Pediococcus pentosaceus ATCC 25745 4418438 YP_803906.1 CDS PEPE_0368 NC_008525.1 415601 416032 D acetyltransferase 415601..416032 Pediococcus pentosaceus ATCC 25745 4418439 YP_803907.1 CDS PEPE_0369 NC_008525.1 416032 417138 D multitransmembrane protein 416032..417138 Pediococcus pentosaceus ATCC 25745 4418440 YP_803908.1 CDS PEPE_0370 NC_008525.1 417131 417892 D multitransmembrane protein 417131..417892 Pediococcus pentosaceus ATCC 25745 4418441 YP_803909.1 CDS PEPE_0371 NC_008525.1 417950 418888 R Mg2+ and Co2+ transporter complement(417950..418888) Pediococcus pentosaceus ATCC 25745 4418442 YP_803910.1 CDS PEPE_0372 NC_008525.1 419000 419737 D hypothetical protein 419000..419737 Pediococcus pentosaceus ATCC 25745 4418443 YP_803911.1 CDS PEPE_0373 NC_008525.1 419777 420106 D Thiol-disulfide isomerase and thioredoxin 419777..420106 Pediococcus pentosaceus ATCC 25745 4418444 YP_803912.1 CDS PEPE_0374 NC_008525.1 420093 420953 D hypothetical protein 420093..420953 Pediococcus pentosaceus ATCC 25745 4418445 YP_803913.1 CDS PEPE_0375 NC_008525.1 420992 421774 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 420992..421774 Pediococcus pentosaceus ATCC 25745 4418446 YP_803914.1 CDS PEPE_0376 NC_008525.1 421858 422232 R lactoylglutathione lyase related lyase complement(421858..422232) Pediococcus pentosaceus ATCC 25745 4418447 YP_803915.1 CDS PEPE_0377 NC_008525.1 422351 423901 D ABC transporter ATPase 422351..423901 Pediococcus pentosaceus ATCC 25745 4418448 YP_803916.1 CDS PEPE_0378 NC_008525.1 423951 424802 R aldo/keto reductase complement(423951..424802) Pediococcus pentosaceus ATCC 25745 4418449 YP_803917.1 CDS PEPE_0379 NC_008525.1 424922 425836 R prolyl aminopeptidase complement(424922..425836) Pediococcus pentosaceus ATCC 25745 4418450 YP_803918.1 CDS PEPE_0380 NC_008525.1 425950 428388 R catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue; x-prolyl-dipeptidyl aminopeptidase complement(425950..428388) Pediococcus pentosaceus ATCC 25745 4418451 YP_803919.1 CDS PEPE_0381 NC_008525.1 428628 429974 D xanthine/uracil/vitamin C permease 428628..429974 Pediococcus pentosaceus ATCC 25745 4418452 YP_803920.1 CDS PEPE_0382 NC_008525.1 430034 431422 R amino acid transporter complement(430034..431422) Pediococcus pentosaceus ATCC 25745 4418418 YP_803921.1 CDS PEPE_0383 NC_008525.1 431572 431994 D NUDIX family hydrolase 431572..431994 Pediococcus pentosaceus ATCC 25745 4418419 YP_803922.1 CDS PEPE_0384 NC_008525.1 432097 432273 R hypothetical protein complement(432097..432273) Pediococcus pentosaceus ATCC 25745 4418420 YP_803923.1 CDS PEPE_0385 NC_008525.1 432400 432981 D guanylate kinase 432400..432981 Pediococcus pentosaceus ATCC 25745 4418421 YP_803924.1 CDS PEPE_0386 NC_008525.1 433029 433478 D Fe2+/Zn2+ uptake regulation protein 433029..433478 Pediococcus pentosaceus ATCC 25745 4418422 YP_803925.1 CDS PEPE_0387 NC_008525.1 433573 434079 D hypothetical protein 433573..434079 Pediococcus pentosaceus ATCC 25745 4418423 YP_803926.1 CDS PEPE_0388 NC_008525.1 434091 434945 D hypothetical protein 434091..434945 Pediococcus pentosaceus ATCC 25745 4418424 YP_803927.1 CDS PEPE_0389 NC_008525.1 435098 435838 D ABC-type polar amino acid transport system, ATPase component 435098..435838 Pediococcus pentosaceus ATCC 25745 4418425 YP_803928.1 CDS PEPE_0390 NC_008525.1 435850 436686 D amino acid ABC transporter periplasmic protein 435850..436686 Pediococcus pentosaceus ATCC 25745 4418426 YP_803929.1 CDS PEPE_0391 NC_008525.1 436683 437333 D ABC-type amino acid transport system, permease component 436683..437333 Pediococcus pentosaceus ATCC 25745 4418427 YP_803930.1 CDS PEPE_0392 NC_008525.1 437333 437989 D ABC-type amino acid transport system, permease component 437333..437989 Pediococcus pentosaceus ATCC 25745 4418428 YP_803931.1 CDS PEPE_0393 NC_008525.1 438053 438610 R acetyltransferase complement(438053..438610) Pediococcus pentosaceus ATCC 25745 4418429 YP_803932.1 CDS PEPE_0394 NC_008525.1 438636 439349 R transcriptional regulator complement(438636..439349) Pediococcus pentosaceus ATCC 25745 4418430 YP_803933.1 CDS PEPE_0395 NC_008525.1 439450 440712 R GTPase complement(439450..440712) Pediococcus pentosaceus ATCC 25745 4418431 YP_803934.1 CDS PEPE_0396 NC_008525.1 440927 442549 D ABC-type oligopeptide transport system, periplasmic component 440927..442549 Pediococcus pentosaceus ATCC 25745 4418432 YP_803935.1 CDS PEPE_0397 NC_008525.1 442639 443568 D ABC-type dipeptide/oligopeptide/nickel transport system, permease component 442639..443568 Pediococcus pentosaceus ATCC 25745 4418433 YP_803936.1 CDS PEPE_0398 NC_008525.1 443573 444598 D ABC-type dipeptide/oligopeptide/nickel transport system, permease component 443573..444598 Pediococcus pentosaceus ATCC 25745 4418434 YP_803937.1 CDS PEPE_0399 NC_008525.1 444613 445686 D ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 444613..445686 Pediococcus pentosaceus ATCC 25745 4418435 YP_803938.1 CDS PEPE_0400 NC_008525.1 445699 446646 D ABC-type oligopeptide transport system, ATPase component 445699..446646 Pediococcus pentosaceus ATCC 25745 4418401 YP_803939.1 CDS PEPE_0401 NC_008525.1 446688 447356 R fructose-2,6-bisphosphatase complement(446688..447356) Pediococcus pentosaceus ATCC 25745 4418402 YP_803940.1 CDS PEPE_0402 NC_008525.1 447364 448995 R amino acid transporter complement(447364..448995) Pediococcus pentosaceus ATCC 25745 4418403 YP_803941.1 CDS PEPE_0403 NC_008525.1 449020 449688 R fructose-2,6-bisphosphatase complement(449020..449688) Pediococcus pentosaceus ATCC 25745 4418404 YP_803942.1 CDS PEPE_0404 NC_008525.1 449829 452126 D superfamily I DNA/RNA helicase 449829..452126 Pediococcus pentosaceus ATCC 25745 4418405 YP_803943.1 CDS PEPE_0405 NC_008525.1 452245 453921 D catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 452245..453921 Pediococcus pentosaceus ATCC 25745 4418406 YP_803944.1 CDS PEPE_0406 NC_008525.1 453933 454637 D Alpha-acetolactate decarboxylase 453933..454637 Pediococcus pentosaceus ATCC 25745 4418407 YP_803945.1 CDS PEPE_0407 NC_008525.1 454691 455608 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 454691..455608 Pediococcus pentosaceus ATCC 25745 4418408 YP_803946.1 CDS PEPE_0408 NC_008525.1 455664 456347 R Crp-like transcriptional regulator complement(455664..456347) Pediococcus pentosaceus ATCC 25745 4418409 YP_803947.1 CDS PEPE_0409 NC_008525.1 456477 456707 D copper chaperone 456477..456707 Pediococcus pentosaceus ATCC 25745 4418410 YP_803948.1 CDS PEPE_0410 NC_008525.1 456707 457261 D DNA-binding ferritin-like protein (oxidative damage protectant) 456707..457261 Pediococcus pentosaceus ATCC 25745 4418411 YP_803949.1 CDS PEPE_0411 NC_008525.1 457264 459120 D cation transport ATPase 457264..459120 Pediococcus pentosaceus ATCC 25745 4418412 YP_803950.1 CDS guaA NC_008525.1 459253 460806 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 459253..460806 Pediococcus pentosaceus ATCC 25745 4418413 YP_803951.1 CDS PEPE_0413 NC_008525.1 461396 461788 R hypothetical protein complement(461396..461788) Pediococcus pentosaceus ATCC 25745 4418414 YP_803952.1 CDS PEPE_0414 NC_008525.1 461951 462265 D XRE family transcriptional regulator 461951..462265 Pediococcus pentosaceus ATCC 25745 4418415 YP_803953.1 CDS PEPE_0415 NC_008525.1 462874 463530 D hypothetical protein 462874..463530 Pediococcus pentosaceus ATCC 25745 4418416 YP_803954.1 CDS PEPE_0416 NC_008525.1 463663 465063 D major facilitator superfamily permease 463663..465063 Pediococcus pentosaceus ATCC 25745 4418417 YP_803955.1 CDS PEPE_0417 NC_008525.1 465112 467646 D lysyl aminopeptidase 465112..467646 Pediococcus pentosaceus ATCC 25745 4418383 YP_803956.1 CDS PEPE_0418 NC_008525.1 467695 468321 R hypothetical protein complement(467695..468321) Pediococcus pentosaceus ATCC 25745 4418384 YP_803957.1 CDS PEPE_0419 NC_008525.1 468641 469291 R metal-dependent membrane protease complement(468641..469291) Pediococcus pentosaceus ATCC 25745 4418385 YP_803958.1 CDS PEPE_0420 NC_008525.1 469476 469760 D Co-chaperonin GroES (HSP10) 469476..469760 Pediococcus pentosaceus ATCC 25745 4418386 YP_803959.1 CDS groEL NC_008525.1 469788 471407 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 469788..471407 Pediococcus pentosaceus ATCC 25745 4418387 YP_803960.1 CDS PEPE_0422 NC_008525.1 471751 473583 D amino acid transporter 471751..473583 Pediococcus pentosaceus ATCC 25745 4418388 YP_803961.1 CDS PEPE_0423 NC_008525.1 473734 474894 D UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 473734..474894 Pediococcus pentosaceus ATCC 25745 4418389 YP_803962.1 CDS PEPE_0424 NC_008525.1 474909 475562 R hypothetical protein complement(474909..475562) Pediococcus pentosaceus ATCC 25745 4418390 YP_803963.1 CDS PEPE_0425 NC_008525.1 475595 476914 D superfamily II DNA/RNA helicase 475595..476914 Pediococcus pentosaceus ATCC 25745 4418391 YP_803964.1 CDS PEPE_0426 NC_008525.1 477154 477585 D amidophosphoribosyltransferase 477154..477585 Pediococcus pentosaceus ATCC 25745 4418392 YP_803965.1 CDS PEPE_0427 NC_008525.1 477716 478270 D SSU ribosomal protein S30P / sigma 54 modulation protein 477716..478270 Pediococcus pentosaceus ATCC 25745 4418393 YP_803966.1 CDS PEPE_0428 NC_008525.1 478431 480791 D protein translocase subunit secA 478431..480791 Pediococcus pentosaceus ATCC 25745 4418394 YP_803967.1 CDS PEPE_0429 NC_008525.1 480873 480947 D hypothetical protein 480873..480947 Pediococcus pentosaceus ATCC 25745 4418395 YP_803968.1 CDS PEPE_0430 NC_008525.1 480958 481989 D peptide chain release factor 2 480958..481989 Pediococcus pentosaceus ATCC 25745 4418396 YP_803969.1 CDS PEPE_0431 NC_008525.1 482000 482704 D DNA-binding response regulator 482000..482704 Pediococcus pentosaceus ATCC 25745 4418397 YP_803970.1 CDS PEPE_0432 NC_008525.1 482676 484061 D Signal transduction histidine kinase 482676..484061 Pediococcus pentosaceus ATCC 25745 4418398 YP_803971.1 CDS PEPE_0433 NC_008525.1 484224 485105 D ABC-type phosphate transport system, periplasmic component 484224..485105 Pediococcus pentosaceus ATCC 25745 4418399 YP_803972.1 CDS PEPE_0434 NC_008525.1 485105 486013 D ABC-type phosphate transport system, permease component 485105..486013 Pediococcus pentosaceus ATCC 25745 4418400 YP_803973.1 CDS PEPE_0435 NC_008525.1 486014 486901 D ABC-type phosphate transport system, permease component 486014..486901 Pediococcus pentosaceus ATCC 25745 4418366 YP_803974.1 CDS PEPE_0436 NC_008525.1 486919 487719 D ABC-type phosphate transport system, ATPase component 486919..487719 Pediococcus pentosaceus ATCC 25745 4418367 YP_803975.1 CDS PEPE_0437 NC_008525.1 487733 488491 D ABC-type phosphate transport system, ATPase component 487733..488491 Pediococcus pentosaceus ATCC 25745 4418368 YP_803976.1 CDS PEPE_0438 NC_008525.1 488503 489186 D phosphate uptake regulator, PhoU 488503..489186 Pediococcus pentosaceus ATCC 25745 4418369 YP_803977.1 CDS PEPE_0439 NC_008525.1 489324 489638 D putative stress-responsive transcriptional regulator 489324..489638 Pediococcus pentosaceus ATCC 25745 4418370 YP_803978.1 CDS PEPE_0440 NC_008525.1 489655 490011 D hypothetical protein 489655..490011 Pediococcus pentosaceus ATCC 25745 4418371 YP_803979.1 CDS PEPE_0441 NC_008525.1 490029 490967 D Serine kinase of the HPr protein, regulates carbohydrate metabolism 490029..490967 Pediococcus pentosaceus ATCC 25745 4418372 YP_803980.1 CDS PEPE_0442 NC_008525.1 490979 491815 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 490979..491815 Pediococcus pentosaceus ATCC 25745 4418373 YP_803981.1 CDS gpsA NC_008525.1 491897 492913 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 491897..492913 Pediococcus pentosaceus ATCC 25745 4418374 YP_803982.1 CDS PEPE_0444 NC_008525.1 492937 493818 D UDP-glucose pyrophosphorylase 492937..493818 Pediococcus pentosaceus ATCC 25745 4418375 YP_803983.1 CDS PEPE_0445 NC_008525.1 493949 494875 D thioredoxin reductase 493949..494875 Pediococcus pentosaceus ATCC 25745 4418376 YP_803984.1 CDS PEPE_0446 NC_008525.1 495032 496756 D alpha-phosphoglucomutase 495032..496756 Pediococcus pentosaceus ATCC 25745 4418377 YP_803985.1 CDS PEPE_0447 NC_008525.1 496912 497541 D HD superfamily hydrolase 496912..497541 Pediococcus pentosaceus ATCC 25745 4418378 YP_803986.1 CDS PEPE_0448 NC_008525.1 497678 499681 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 497678..499681 Pediococcus pentosaceus ATCC 25745 4418379 YP_803987.1 CDS uvrA NC_008525.1 499694 502537 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 499694..502537 Pediococcus pentosaceus ATCC 25745 4418380 YP_803988.1 CDS PEPE_0450 NC_008525.1 502636 503523 D hypothetical protein 502636..503523 Pediococcus pentosaceus ATCC 25745 4418381 YP_803989.1 CDS PEPE_0451 NC_008525.1 503520 504521 D hypothetical protein 503520..504521 Pediococcus pentosaceus ATCC 25745 4418382 YP_803990.1 CDS PEPE_0452 NC_008525.1 504534 505463 D hypothetical protein 504534..505463 Pediococcus pentosaceus ATCC 25745 4418349 YP_803991.1 CDS PEPE_0453 NC_008525.1 505640 508219 D N-acetylmuramidase 505640..508219 Pediococcus pentosaceus ATCC 25745 4418350 YP_803992.1 CDS PEPE_0454 NC_008525.1 508304 508576 D hypothetical protein 508304..508576 Pediococcus pentosaceus ATCC 25745 4418351 YP_803993.1 CDS clpP NC_008525.1 508621 509214 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(508621..509214) Pediococcus pentosaceus ATCC 25745 4418352 YP_803994.1 CDS PEPE_0457 NC_008525.1 509598 510914 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 509598..510914 Pediococcus pentosaceus ATCC 25745 4418354 YP_803995.1 CDS PEPE_0458 NC_008525.1 511098 512129 D central glycolytic genes regulator 511098..512129 Pediococcus pentosaceus ATCC 25745 4418355 YP_803996.1 CDS PEPE_0459 NC_008525.1 512197 513219 D glyceraldehyde-3-phosphate dehydrogenase 512197..513219 Pediococcus pentosaceus ATCC 25745 4418356 YP_803997.1 CDS pgk NC_008525.1 513342 514544 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 513342..514544 Pediococcus pentosaceus ATCC 25745 4418357 YP_803998.1 CDS tpiA NC_008525.1 514624 515379 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 514624..515379 Pediococcus pentosaceus ATCC 25745 4418358 YP_803999.1 CDS eno NC_008525.1 515455 516777 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 515455..516777 Pediococcus pentosaceus ATCC 25745 4418359 YP_804000.1 CDS PEPE_0463 NC_008525.1 516904 517140 D preprotein translocase subunit SecG 516904..517140 Pediococcus pentosaceus ATCC 25745 4418360 YP_804001.1 CDS PEPE_0464 NC_008525.1 517279 519624 D exoribonuclease R 517279..519624 Pediococcus pentosaceus ATCC 25745 4418361 YP_804002.1 CDS smpB NC_008525.1 519639 520106 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 519639..520106 Pediococcus pentosaceus ATCC 25745 4418362 YP_804003.1 CDS PEPE_0466 NC_008525.1 520141 520704 R acetyltransferase complement(520141..520704) Pediococcus pentosaceus ATCC 25745 4418363 YP_804004.1 CDS PEPE_0467 NC_008525.1 520658 521260 R hypothetical protein complement(520658..521260) Pediococcus pentosaceus ATCC 25745 4418364 YP_804005.1 CDS PEPE_0468 NC_008525.1 521275 522147 R HAD superfamily hydrolase complement(521275..522147) Pediococcus pentosaceus ATCC 25745 4418365 YP_804006.1 CDS PEPE_0469 NC_008525.1 522258 522950 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 522258..522950 Pediococcus pentosaceus ATCC 25745 4418332 YP_804007.1 CDS PEPE_0470 NC_008525.1 522953 523426 D ATPase or kinase 522953..523426 Pediococcus pentosaceus ATCC 25745 4418333 YP_804008.1 CDS PEPE_0471 NC_008525.1 523416 523913 D acetyltransferase 523416..523913 Pediococcus pentosaceus ATCC 25745 4418334 YP_804009.1 CDS PEPE_0472 NC_008525.1 523906 524442 R DNA polymerase III, epsilon subunit related 3'-5' exonuclease complement(523906..524442) Pediococcus pentosaceus ATCC 25745 4418335 YP_804010.1 CDS PEPE_0473 NC_008525.1 524517 525434 D dehydrogenase related protein 524517..525434 Pediococcus pentosaceus ATCC 25745 4418336 YP_804011.1 CDS murB NC_008525.1 525479 526381 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 525479..526381 Pediococcus pentosaceus ATCC 25745 4418337 YP_804012.1 CDS PEPE_0475 NC_008525.1 526512 527363 D hypothetical protein 526512..527363 Pediococcus pentosaceus ATCC 25745 4418338 YP_804013.1 CDS PEPE_0476 NC_008525.1 527364 528293 D hypothetical protein 527364..528293 Pediococcus pentosaceus ATCC 25745 4418339 YP_804014.1 CDS glmM NC_008525.1 528312 529670 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 528312..529670 Pediococcus pentosaceus ATCC 25745 4418340 YP_804015.1 CDS PEPE_0478 NC_008525.1 529906 531723 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 529906..531723 Pediococcus pentosaceus ATCC 25745 4418341 YP_804016.1 CDS PEPE_0479 NC_008525.1 531992 532303 D hypothetical protein 531992..532303 Pediococcus pentosaceus ATCC 25745 4418342 YP_804017.1 CDS PEPE_0481 NC_008525.1 534223 534759 R hypothetical protein complement(534223..534759) Pediococcus pentosaceus ATCC 25745 4418344 YP_804018.1 CDS PEPE_0482 NC_008525.1 534905 535588 D HAD superfamily hydrolase 534905..535588 Pediococcus pentosaceus ATCC 25745 4418345 YP_804019.1 CDS PEPE_0483 NC_008525.1 535917 537203 D manganese transporter NRAMP 535917..537203 Pediococcus pentosaceus ATCC 25745 4418346 YP_804020.1 CDS PEPE_0484 NC_008525.1 537223 539394 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 537223..539394 Pediococcus pentosaceus ATCC 25745 4418347 YP_804021.1 CDS PEPE_0485 NC_008525.1 539387 539974 D ribonucleoside-triphosphate reductase class III activase subunit 539387..539974 Pediococcus pentosaceus ATCC 25745 4418348 YP_804022.1 CDS PEPE_0486 NC_008525.1 539991 540752 D Fe-S cluster assembly ABC-type transport system, ATPase component 539991..540752 Pediococcus pentosaceus ATCC 25745 4418314 YP_804023.1 CDS PEPE_0487 NC_008525.1 540790 541818 D Fe-S cluster assembly ABC-type transport system, permease component 540790..541818 Pediococcus pentosaceus ATCC 25745 4418315 YP_804024.1 CDS PEPE_0488 NC_008525.1 541831 543006 D cysteine sulfinate desulfinase/cysteine desulfurase 541831..543006 Pediococcus pentosaceus ATCC 25745 4418316 YP_804025.1 CDS PEPE_0489 NC_008525.1 543003 543443 D Fe-S cluster formation protein, NifU-like 543003..543443 Pediococcus pentosaceus ATCC 25745 4418317 YP_804026.1 CDS PEPE_0490 NC_008525.1 543433 544842 D Fe-S cluster assembly ABC-type transport system, permease component 543433..544842 Pediococcus pentosaceus ATCC 25745 4418318 YP_804027.1 CDS PEPE_0491 NC_008525.1 544998 545534 D phenolic acid decarboxylase 544998..545534 Pediococcus pentosaceus ATCC 25745 4418319 YP_804028.1 CDS PEPE_0492 NC_008525.1 545561 546091 D PadR family transcriptional regulator 545561..546091 Pediococcus pentosaceus ATCC 25745 4418320 YP_804029.1 CDS PEPE_0493 NC_008525.1 546319 546636 D hypothetical protein 546319..546636 Pediococcus pentosaceus ATCC 25745 4418321 YP_804030.1 CDS PEPE_0495 NC_008525.1 547219 549540 R amino acid transporter complement(547219..549540) Pediococcus pentosaceus ATCC 25745 4418323 YP_804031.1 CDS PEPE_0496 NC_008525.1 549706 550824 R methionine synthase II (cobalamin-independent) complement(549706..550824) Pediococcus pentosaceus ATCC 25745 4418324 YP_804032.1 CDS PEPE_0497 NC_008525.1 551558 552118 D site-specific recombinase, DNA invertase Pin related proteins 551558..552118 Pediococcus pentosaceus ATCC 25745 4418325 YP_804033.1 CDS PEPE_0498 NC_008525.1 552310 553239 R IS30 family transposase complement(552310..553239) Pediococcus pentosaceus ATCC 25745 4418326 YP_804034.1 CDS PEPE_0499 NC_008525.1 553347 553748 R pyridoxine 5'-phosphate oxidase V related favin-nucleotide-binding protein complement(553347..553748) Pediococcus pentosaceus ATCC 25745 4418327 YP_804035.1 CDS PEPE_0500 NC_008525.1 554364 554537 D hypothetical protein 554364..554537 Pediococcus pentosaceus ATCC 25745 4418328 YP_804036.1 CDS PEPE_0501 NC_008525.1 554786 554977 R hypothetical protein complement(554786..554977) Pediococcus pentosaceus ATCC 25745 4418329 YP_804037.1 CDS PEPE_0502 NC_008525.1 555105 556634 D putative multicopper oxidase 555105..556634 Pediococcus pentosaceus ATCC 25745 4418330 YP_804038.1 CDS PEPE_0503 NC_008525.1 556673 558046 D major facilitator superfamily permease 556673..558046 Pediococcus pentosaceus ATCC 25745 4418331 YP_804039.1 CDS PEPE_0504 NC_008525.1 558257 558595 D hypothetical protein 558257..558595 Pediococcus pentosaceus ATCC 25745 4418297 YP_804040.1 CDS PEPE_0505 NC_008525.1 558703 558816 D hypothetical protein 558703..558816 Pediococcus pentosaceus ATCC 25745 4418298 YP_804041.1 CDS PEPE_0506 NC_008525.1 558813 559418 D Phage Mu protein F like protein 558813..559418 Pediococcus pentosaceus ATCC 25745 4418299 YP_804042.1 CDS PEPE_0507 NC_008525.1 559537 559785 R hypothetical protein complement(559537..559785) Pediococcus pentosaceus ATCC 25745 4418300 YP_804043.1 CDS PEPE_0508 NC_008525.1 559792 559923 R hypothetical protein complement(559792..559923) Pediococcus pentosaceus ATCC 25745 4418301 YP_804044.1 CDS PEPE_0509 NC_008525.1 560133 560279 D hypothetical protein 560133..560279 Pediococcus pentosaceus ATCC 25745 4418302 YP_804045.1 CDS PEPE_0511 NC_008525.1 561046 561876 R AraC family transcriptional regulator complement(561046..561876) Pediococcus pentosaceus ATCC 25745 4418304 YP_804046.1 CDS PEPE_0512 NC_008525.1 562111 564039 D Na+/xyloside symporter related transporter 562111..564039 Pediococcus pentosaceus ATCC 25745 4418305 YP_804047.1 CDS PEPE_0513 NC_008525.1 564097 566298 D Alpha-galactosidase 564097..566298 Pediococcus pentosaceus ATCC 25745 4418306 YP_804048.1 CDS PEPE_0515 NC_008525.1 568566 568772 D small membrane protein 568566..568772 Pediococcus pentosaceus ATCC 25745 4418308 YP_804049.1 CDS PEPE_0516 NC_008525.1 568850 569716 R branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase / fructokinase complement(568850..569716) Pediococcus pentosaceus ATCC 25745 4418309 YP_804050.1 CDS PEPE_0517 NC_008525.1 569796 571955 R Alpha-galactosidase complement(569796..571955) Pediococcus pentosaceus ATCC 25745 4418310 YP_804051.1 CDS PEPE_0518 NC_008525.1 571975 573930 R sucrose PTS, EIIBCA complement(571975..573930) Pediococcus pentosaceus ATCC 25745 4418311 YP_804052.1 CDS PEPE_0519 NC_008525.1 574186 575691 D beta-fructofuranosidase 574186..575691 Pediococcus pentosaceus ATCC 25745 4418312 YP_804053.1 CDS PEPE_0520 NC_008525.1 575672 576652 D LacI family transcription regulator 575672..576652 Pediococcus pentosaceus ATCC 25745 4418313 YP_804054.1 CDS PEPE_0521 NC_008525.1 576673 578349 D oligo-1,6-glucosidase 576673..578349 Pediococcus pentosaceus ATCC 25745 4418279 YP_804055.1 CDS PEPE_0522 NC_008525.1 578507 578764 R NADPH:quinone reductase related Zn-dependent oxidoreductase complement(578507..578764) Pediococcus pentosaceus ATCC 25745 4418280 YP_804056.1 CDS PEPE_0523 NC_008525.1 578915 579166 D transposase 578915..579166 Pediococcus pentosaceus ATCC 25745 4418281 YP_804057.1 CDS PEPE_0524 NC_008525.1 579439 580029 D transposase 579439..580029 Pediococcus pentosaceus ATCC 25745 4418282 YP_804058.1 CDS PEPE_0525 NC_008525.1 580444 580689 D hypothetical protein 580444..580689 Pediococcus pentosaceus ATCC 25745 4418283 YP_804059.1 CDS PEPE_0527 NC_008525.1 581183 581467 D transcriptional regulator 581183..581467 Pediococcus pentosaceus ATCC 25745 4418285 YP_804060.1 CDS PEPE_0528 NC_008525.1 581988 583346 D pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, related enzyme 581988..583346 Pediococcus pentosaceus ATCC 25745 4418286 YP_804061.1 CDS PEPE_0529 NC_008525.1 584203 584382 D hypothetical protein 584203..584382 Pediococcus pentosaceus ATCC 25745 4418287 YP_804062.1 CDS PEPE_0531 NC_008525.1 585611 587089 R MutH family type II restriction endonuclease complement(585611..587089) Pediococcus pentosaceus ATCC 25745 4418289 YP_804063.1 CDS PEPE_0532 NC_008525.1 587203 588489 D site-specific DNA methylase 587203..588489 Pediococcus pentosaceus ATCC 25745 4418290 YP_804064.1 CDS PEPE_0533 NC_008525.1 588654 591155 D hypothetical protein 588654..591155 Pediococcus pentosaceus ATCC 25745 4418291 YP_804065.1 CDS PEPE_0534 NC_008525.1 591152 592354 D hypothetical protein 591152..592354 Pediococcus pentosaceus ATCC 25745 4418292 YP_804066.1 CDS PEPE_0535 NC_008525.1 592347 594929 D SNF2 family DNA/RNA helicase 592347..594929 Pediococcus pentosaceus ATCC 25745 4418293 YP_804067.1 CDS PEPE_0536 NC_008525.1 595035 595256 D hypothetical protein 595035..595256 Pediococcus pentosaceus ATCC 25745 4418294 YP_804068.1 CDS PEPE_0537 NC_008525.1 595591 597213 R recombinase D complement(595591..597213) Pediococcus pentosaceus ATCC 25745 4418295 YP_804069.1 CDS PEPE_0538 NC_008525.1 597526 597951 R hypothetical protein complement(597526..597951) Pediococcus pentosaceus ATCC 25745 4418296 YP_804070.1 CDS PEPE_0539 NC_008525.1 598107 598337 R hypothetical protein complement(598107..598337) Pediococcus pentosaceus ATCC 25745 4418263 YP_804071.1 CDS PEPE_0540 NC_008525.1 598886 600040 D integrase 598886..600040 Pediococcus pentosaceus ATCC 25745 4418264 YP_804072.1 CDS PEPE_0542 NC_008525.1 600666 600815 R hypothetical protein complement(600666..600815) Pediococcus pentosaceus ATCC 25745 4418266 YP_804073.1 CDS PEPE_0543 NC_008525.1 600943 601755 D LPS biosynthesis protein 600943..601755 Pediococcus pentosaceus ATCC 25745 4418267 YP_804074.1 CDS PEPE_0544 NC_008525.1 601771 602556 D integral membrane protein 601771..602556 Pediococcus pentosaceus ATCC 25745 4418268 YP_804075.1 CDS PEPE_0545 NC_008525.1 602575 603306 R Short-chain alcohol dehydrogenase of unknown specificity complement(602575..603306) Pediococcus pentosaceus ATCC 25745 4418269 YP_804076.1 CDS PEPE_0546 NC_008525.1 603387 603854 D transcriptional regulator 603387..603854 Pediococcus pentosaceus ATCC 25745 4418270 YP_804077.1 CDS asnC NC_008525.1 604220 605614 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 604220..605614 Pediococcus pentosaceus ATCC 25745 4418271 YP_804078.1 CDS PEPE_0548 NC_008525.1 605662 606102 R acetyltransferase complement(605662..606102) Pediococcus pentosaceus ATCC 25745 4418272 YP_804079.1 CDS PEPE_0549 NC_008525.1 606127 606879 R AraC family transcriptional regulator complement(606127..606879) Pediococcus pentosaceus ATCC 25745 4418273 YP_804080.1 CDS PEPE_0550 NC_008525.1 606986 609229 D pyridine nucleotide-disulphide oxidoreductase 606986..609229 Pediococcus pentosaceus ATCC 25745 4418274 YP_804081.1 CDS PEPE_0551 NC_008525.1 609241 609441 D sugar phosphate permease 609241..609441 Pediococcus pentosaceus ATCC 25745 4418275 YP_804082.1 CDS PEPE_0552 NC_008525.1 609484 610545 D glycerol-3-phosphatase transporter 609484..610545 Pediococcus pentosaceus ATCC 25745 4418276 YP_804083.1 CDS PEPE_0553 NC_008525.1 610583 610666 R hypothetical protein complement(610583..610666) Pediococcus pentosaceus ATCC 25745 4418277 YP_804084.1 CDS PEPE_0554 NC_008525.1 610660 611283 R multidrug ABC transporter complement(610660..611283) Pediococcus pentosaceus ATCC 25745 4418278 YP_804085.1 CDS PEPE_0555 NC_008525.1 611746 612234 D hypothetical protein 611746..612234 Pediococcus pentosaceus ATCC 25745 4418245 YP_804086.1 CDS PEPE_0556 NC_008525.1 612292 613263 D cell surface protein 612292..613263 Pediococcus pentosaceus ATCC 25745 4418246 YP_804087.1 CDS PEPE_0557 NC_008525.1 613308 613523 R hypothetical protein complement(613308..613523) Pediococcus pentosaceus ATCC 25745 4418247 YP_804088.1 CDS PEPE_0558 NC_008525.1 613850 614647 D hydroxyethylthiazole kinase 613850..614647 Pediococcus pentosaceus ATCC 25745 4418248 YP_804089.1 CDS PEPE_0559 NC_008525.1 614651 615466 D hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 614651..615466 Pediococcus pentosaceus ATCC 25745 4418249 YP_804090.1 CDS PEPE_0560 NC_008525.1 615463 616113 D thiamine monophosphate synthase 615463..616113 Pediococcus pentosaceus ATCC 25745 4418250 YP_804091.1 CDS PEPE_0561 NC_008525.1 616125 616799 D putative transcription activator 616125..616799 Pediococcus pentosaceus ATCC 25745 4418251 YP_804092.1 CDS PEPE_0562 NC_008525.1 616919 618673 D ATP-dependent DNA helicase RecQ 616919..618673 Pediococcus pentosaceus ATCC 25745 4418252 YP_804093.1 CDS PEPE_0563 NC_008525.1 618763 619464 D Zn-dependent protease 618763..619464 Pediococcus pentosaceus ATCC 25745 4418253 YP_804094.1 CDS PEPE_0564 NC_008525.1 619637 620764 D Beta-lactamase class C related penicillin binding protein 619637..620764 Pediococcus pentosaceus ATCC 25745 4418254 YP_804095.1 CDS PEPE_0565 NC_008525.1 620780 621565 D capsular polysaccharide biosynthesis protein 620780..621565 Pediococcus pentosaceus ATCC 25745 4418255 YP_804096.1 CDS PEPE_0566 NC_008525.1 621575 622306 D tyrosine-protein kinase 621575..622306 Pediococcus pentosaceus ATCC 25745 4418256 YP_804097.1 CDS PEPE_0567 NC_008525.1 622306 623097 D capsular polysaccharide biosynthesis protein 622306..623097 Pediococcus pentosaceus ATCC 25745 4418257 YP_804098.1 CDS PEPE_0568 NC_008525.1 623109 623762 D lipopolysaccharide synthesis sugar transferase 623109..623762 Pediococcus pentosaceus ATCC 25745 4418258 YP_804099.1 CDS PEPE_0569 NC_008525.1 623791 624573 D lipopolysaccharide biosynthesis glycosyltransferase 623791..624573 Pediococcus pentosaceus ATCC 25745 4418259 YP_804100.1 CDS PEPE_0570 NC_008525.1 624623 625735 D glycosyltransferase 624623..625735 Pediococcus pentosaceus ATCC 25745 4418260 YP_804101.1 CDS PEPE_0571 NC_008525.1 625738 626736 D glycosyltransferase 625738..626736 Pediococcus pentosaceus ATCC 25745 4418261 YP_804102.1 CDS PEPE_0572 NC_008525.1 626775 627791 D hypothetical protein 626775..627791 Pediococcus pentosaceus ATCC 25745 4418262 YP_804103.1 CDS PEPE_0573 NC_008525.1 627933 629096 D polysaccharide polymerase 627933..629096 Pediococcus pentosaceus ATCC 25745 4418228 YP_804104.1 CDS PEPE_0574 NC_008525.1 629155 630273 D UDP-galactopyranose mutase 629155..630273 Pediococcus pentosaceus ATCC 25745 4418229 YP_804105.1 CDS PEPE_0575 NC_008525.1 630302 631726 D PST family polysaccharide transporter 630302..631726 Pediococcus pentosaceus ATCC 25745 4418230 YP_804106.1 CDS PEPE_0576 NC_008525.1 631749 632717 D glycosyltransferase-like protein 631749..632717 Pediococcus pentosaceus ATCC 25745 4418231 YP_804107.1 CDS PEPE_0577 NC_008525.1 632823 633827 D fucose 4-O-acetylase related acetyltransferase 632823..633827 Pediococcus pentosaceus ATCC 25745 4418232 YP_804108.1 CDS PEPE_0578 NC_008525.1 634316 634621 D cellobiose-specific PTS system IIB component 634316..634621 Pediococcus pentosaceus ATCC 25745 4418233 YP_804109.1 CDS PEPE_0579 NC_008525.1 634637 635863 D phosphotransferase system cellobiose-specific component IIC 634637..635863 Pediococcus pentosaceus ATCC 25745 4418234 YP_804110.1 CDS PEPE_0580 NC_008525.1 635895 636245 D cellobiose-specific PTS system IIA component 635895..636245 Pediococcus pentosaceus ATCC 25745 4418235 YP_804111.1 CDS PEPE_0581 NC_008525.1 636245 637699 D Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase 636245..637699 Pediococcus pentosaceus ATCC 25745 4418236 YP_804112.1 CDS PEPE_0582 NC_008525.1 637756 639633 D transcriptional antiterminator 637756..639633 Pediococcus pentosaceus ATCC 25745 4418237 YP_804113.1 CDS PEPE_0583 NC_008525.1 639684 640205 R glycopeptide antibiotics resistance protein complement(639684..640205) Pediococcus pentosaceus ATCC 25745 4418238 YP_804114.1 CDS PEPE_0584 NC_008525.1 640240 641562 R amino acid transporter complement(640240..641562) Pediococcus pentosaceus ATCC 25745 4418239 YP_804115.1 CDS PEPE_0585 NC_008525.1 641672 642604 R transcriptional regulator complement(641672..642604) Pediococcus pentosaceus ATCC 25745 4418240 YP_804116.1 CDS PEPE_0586 NC_008525.1 642693 643334 D Acyl carrier protein phosphodiesterase 642693..643334 Pediococcus pentosaceus ATCC 25745 4418241 YP_804117.1 CDS PEPE_0587 NC_008525.1 643413 644186 D Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 643413..644186 Pediococcus pentosaceus ATCC 25745 4418242 YP_804118.1 CDS PEPE_0588 NC_008525.1 644217 644579 R hypothetical protein complement(644217..644579) Pediococcus pentosaceus ATCC 25745 4418243 YP_804119.1 CDS PEPE_0589 NC_008525.1 644755 645762 D dehydrogenase related protein 644755..645762 Pediococcus pentosaceus ATCC 25745 4418244 YP_804120.1 CDS PEPE_0590 NC_008525.1 645769 647085 D superfamily II DNA/RNA helicase 645769..647085 Pediococcus pentosaceus ATCC 25745 4418211 YP_804121.1 CDS PEPE_0591 NC_008525.1 647178 648206 D transcriptional regulator 647178..648206 Pediococcus pentosaceus ATCC 25745 4418212 YP_804122.1 CDS PEPE_0592 NC_008525.1 648229 648468 D hypothetical protein 648229..648468 Pediococcus pentosaceus ATCC 25745 4418213 YP_804123.1 CDS PEPE_0593 NC_008525.1 648774 649022 D hypothetical protein 648774..649022 Pediococcus pentosaceus ATCC 25745 4418214 YP_804124.1 CDS PEPE_0595 NC_008525.1 649596 650573 D guanosine 5'-monophosphate oxidoreductase 649596..650573 Pediococcus pentosaceus ATCC 25745 4418216 YP_804125.1 CDS PEPE_0596 NC_008525.1 650750 651988 R PepS aminopeptidase complement(650750..651988) Pediococcus pentosaceus ATCC 25745 4418217 YP_804126.1 CDS PEPE_0597 NC_008525.1 652082 653194 D UDP-N-acetylglucosamine 2-epimerase 652082..653194 Pediococcus pentosaceus ATCC 25745 4418218 YP_804127.1 CDS PEPE_0598 NC_008525.1 653296 653751 R flavodoxin complement(653296..653751) Pediococcus pentosaceus ATCC 25745 4418219 YP_804128.1 CDS PEPE_0599 NC_008525.1 653845 654621 D hypothetical protein 653845..654621 Pediococcus pentosaceus ATCC 25745 4418220 YP_804129.1 CDS PEPE_0600 NC_008525.1 654724 655278 D hypothetical protein 654724..655278 Pediococcus pentosaceus ATCC 25745 4418221 YP_804130.1 CDS PEPE_0601 NC_008525.1 655360 656490 D permease 655360..656490 Pediococcus pentosaceus ATCC 25745 4418222 YP_804131.1 CDS PEPE_0602 NC_008525.1 656566 656970 D glycerol-3-phosphate cytidylyltransferase 656566..656970 Pediococcus pentosaceus ATCC 25745 4418223 YP_804132.1 CDS prfC NC_008525.1 657038 658606 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 657038..658606 Pediococcus pentosaceus ATCC 25745 4418224 YP_804133.1 CDS PEPE_0604 NC_008525.1 658712 660886 D phosphoglycerol transferase/alkaline phosphatase superfamily protein 658712..660886 Pediococcus pentosaceus ATCC 25745 4418225 YP_804134.1 CDS PEPE_0605 NC_008525.1 660954 661799 D permease 660954..661799 Pediococcus pentosaceus ATCC 25745 4418226 YP_804135.1 CDS PEPE_0606 NC_008525.1 661799 662161 D hypothetical protein 661799..662161 Pediococcus pentosaceus ATCC 25745 4418227 YP_804136.1 CDS PEPE_0607 NC_008525.1 662216 664282 R ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones complement(662216..664282) Pediococcus pentosaceus ATCC 25745 4418198 YP_804137.1 CDS PEPE_0608 NC_008525.1 664640 664828 D hypothetical protein 664640..664828 Pediococcus pentosaceus ATCC 25745 4418199 YP_804138.1 CDS PEPE_0609 NC_008525.1 664974 665240 D phosphocarrier protein HPr 664974..665240 Pediococcus pentosaceus ATCC 25745 4418200 YP_804139.1 CDS PEPE_0610 NC_008525.1 665240 666964 D phosphoenolpyruvate--protein phosphotransferase 665240..666964 Pediococcus pentosaceus ATCC 25745 4418201 YP_804140.1 CDS PEPE_0611 NC_008525.1 667037 667810 D alpha/beta fold family hydrolase 667037..667810 Pediococcus pentosaceus ATCC 25745 4418202 YP_804141.1 CDS PEPE_0612 NC_008525.1 667900 669075 D 1,2-diacylglycerol 3-glucosyltransferase 667900..669075 Pediococcus pentosaceus ATCC 25745 4418203 YP_804142.1 CDS PEPE_0613 NC_008525.1 669125 670141 D glycosyltransferase 669125..670141 Pediococcus pentosaceus ATCC 25745 4418204 YP_804143.1 CDS PEPE_0614 NC_008525.1 670155 671189 D integral membrane protein 670155..671189 Pediococcus pentosaceus ATCC 25745 4418205 YP_804144.1 CDS PEPE_0639 NC_008525.1 678838 680571 D pyruvate oxidase 678838..680571 Pediococcus pentosaceus ATCC 25745 4418525 YP_804145.1 CDS PEPE_0640 NC_008525.1 680641 681372 R hypothetical protein complement(680641..681372) Pediococcus pentosaceus ATCC 25745 4418526 YP_804146.1 CDS PEPE_0641 NC_008525.1 681545 682735 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 681545..682735 Pediococcus pentosaceus ATCC 25745 4418527 YP_804147.1 CDS PEPE_0642 NC_008525.1 682810 684276 D major facilitator superfamily permease 682810..684276 Pediococcus pentosaceus ATCC 25745 4418528 YP_804148.1 CDS PEPE_0643 NC_008525.1 684323 684886 R SAM-dependent methyltransferase complement(684323..684886) Pediococcus pentosaceus ATCC 25745 4418529 YP_804149.1 CDS PEPE_0644 NC_008525.1 684879 685511 R membrane-associated phospholipid phosphatase complement(684879..685511) Pediococcus pentosaceus ATCC 25745 4418530 YP_804150.1 CDS leuS NC_008525.1 685858 688275 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 685858..688275 Pediococcus pentosaceus ATCC 25745 4418531 YP_804151.1 CDS PEPE_0646 NC_008525.1 688479 690164 D polysaccharide transporter 688479..690164 Pediococcus pentosaceus ATCC 25745 4418532 YP_804152.1 CDS PEPE_0647 NC_008525.1 690173 690892 D ribosomal small subunit pseudouridine synthase A 690173..690892 Pediococcus pentosaceus ATCC 25745 4418533 YP_804153.1 CDS PEPE_0648 NC_008525.1 690915 691754 R sugar kinase complement(690915..691754) Pediococcus pentosaceus ATCC 25745 4418534 YP_804154.1 CDS PEPE_0649 NC_008525.1 691889 692341 D universal stress protein UspA-like nucleotide-binding protein 691889..692341 Pediococcus pentosaceus ATCC 25745 4418535 YP_804155.1 CDS PEPE_0650 NC_008525.1 692419 693078 R deoxynucleoside kinase complement(692419..693078) Pediococcus pentosaceus ATCC 25745 4418536 YP_804156.1 CDS PEPE_0651 NC_008525.1 693323 694144 D HAD superfamily hydrolase 693323..694144 Pediococcus pentosaceus ATCC 25745 4418149 YP_804157.1 CDS PEPE_0652 NC_008525.1 694149 694349 D hypothetical protein 694149..694349 Pediococcus pentosaceus ATCC 25745 4418150 YP_804158.1 CDS PEPE_0653 NC_008525.1 694346 694561 D hypothetical protein 694346..694561 Pediococcus pentosaceus ATCC 25745 4418151 YP_804159.1 CDS PEPE_0654 NC_008525.1 694562 694840 D hypothetical protein 694562..694840 Pediococcus pentosaceus ATCC 25745 4418152 YP_804160.1 CDS PEPE_0655 NC_008525.1 694940 695164 R hypothetical protein complement(694940..695164) Pediococcus pentosaceus ATCC 25745 4418153 YP_804161.1 CDS PEPE_0657 NC_008525.1 695602 696240 D carbonic anhydrase 695602..696240 Pediococcus pentosaceus ATCC 25745 4418155 YP_804162.1 CDS PEPE_0658 NC_008525.1 696320 696829 R hypothetical protein complement(696320..696829) Pediococcus pentosaceus ATCC 25745 4418156 YP_804163.1 CDS PEPE_0659 NC_008525.1 697166 699046 D asparagine synthase (glutamine-hydrolyzing) 697166..699046 Pediococcus pentosaceus ATCC 25745 4418157 YP_804164.1 CDS murE NC_008525.1 699062 700585 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 699062..700585 Pediococcus pentosaceus ATCC 25745 4418158 YP_804165.1 CDS PEPE_0661 NC_008525.1 700585 701841 D ATP-grasp protein 700585..701841 Pediococcus pentosaceus ATCC 25745 4418159 YP_804166.1 CDS PEPE_0662 NC_008525.1 701847 702554 D aspartate racemase 701847..702554 Pediococcus pentosaceus ATCC 25745 4418160 YP_804167.1 CDS PEPE_0663 NC_008525.1 702624 703436 D DNA-entry nuclease 702624..703436 Pediococcus pentosaceus ATCC 25745 4418161 YP_804168.1 CDS PEPE_0664 NC_008525.1 703568 705013 D amino acid transporter 703568..705013 Pediococcus pentosaceus ATCC 25745 4418162 YP_804169.1 CDS PEPE_0666 NC_008525.1 705289 705573 R hypothetical protein complement(705289..705573) Pediococcus pentosaceus ATCC 25745 4418131 YP_804170.1 CDS PEPE_0667 NC_008525.1 705651 706463 R HAD superfamily hydrolase complement(705651..706463) Pediococcus pentosaceus ATCC 25745 4418132 YP_804171.1 CDS PEPE_0668 NC_008525.1 706672 707517 D Aryl-alcohol dehydrogenase related enzyme 706672..707517 Pediococcus pentosaceus ATCC 25745 4418133 YP_804172.1 CDS argS NC_008525.1 707778 709466 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 707778..709466 Pediococcus pentosaceus ATCC 25745 4418134 YP_804173.1 CDS PEPE_0670 NC_008525.1 709732 710403 D cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase 709732..710403 Pediococcus pentosaceus ATCC 25745 4418135 YP_804174.1 CDS PEPE_0671 NC_008525.1 710426 710884 D ArgR family transcriptional regulator 710426..710884 Pediococcus pentosaceus ATCC 25745 4418136 YP_804175.1 CDS PEPE_0672 NC_008525.1 710987 713140 D membrane carboxypeptidase (penicillin-binding protein) 710987..713140 Pediococcus pentosaceus ATCC 25745 4418137 YP_804176.1 CDS PEPE_0673 NC_008525.1 713205 713549 D hypothetical protein 713205..713549 Pediococcus pentosaceus ATCC 25745 4418138 YP_804177.1 CDS PEPE_0674 NC_008525.1 713664 714887 D DNA repair exonuclease 713664..714887 Pediococcus pentosaceus ATCC 25745 4418139 YP_804178.1 CDS PEPE_0675 NC_008525.1 714877 717453 D DNA repair ATPase 714877..717453 Pediococcus pentosaceus ATCC 25745 4418140 YP_804179.1 CDS PEPE_0676 NC_008525.1 717468 718415 D HD-superfamily hydrolase 717468..718415 Pediococcus pentosaceus ATCC 25745 4418141 YP_804180.1 CDS prsA NC_008525.1 718456 719343 R cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein; peptidylprolyl isomerase complement(718456..719343) Pediococcus pentosaceus ATCC 25745 4418142 YP_804181.1 CDS PEPE_0678 NC_008525.1 719450 719815 R hypothetical protein complement(719450..719815) Pediococcus pentosaceus ATCC 25745 4418143 YP_804182.1 CDS PEPE_0679 NC_008525.1 719818 720249 R diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases complement(719818..720249) Pediococcus pentosaceus ATCC 25745 4418144 YP_804183.1 CDS PEPE_0680 NC_008525.1 720387 721124 D ABC-type multidrug transport system, ATPase component 720387..721124 Pediococcus pentosaceus ATCC 25745 4418145 YP_804184.1 CDS PEPE_0681 NC_008525.1 721117 722316 D ABC transporter permease 721117..722316 Pediococcus pentosaceus ATCC 25745 4418146 YP_804185.1 CDS trmB NC_008525.1 722332 722970 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 722332..722970 Pediococcus pentosaceus ATCC 25745 4418147 YP_804186.1 CDS PEPE_0683 NC_008525.1 723027 723353 R hypothetical protein complement(723027..723353) Pediococcus pentosaceus ATCC 25745 4418148 YP_804187.1 CDS PEPE_0684 NC_008525.1 723436 724068 D EMAP domain-containing protein 723436..724068 Pediococcus pentosaceus ATCC 25745 4418114 YP_804188.1 CDS PEPE_0685 NC_008525.1 724082 725998 D DNA segregation ATPase FtsK/SpoIIIE related protein 724082..725998 Pediococcus pentosaceus ATCC 25745 4418115 YP_804189.1 CDS murC NC_008525.1 726040 727350 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 726040..727350 Pediococcus pentosaceus ATCC 25745 4418116 YP_804190.1 CDS PEPE_0687 NC_008525.1 727452 728150 D integral membrane protein, interacts with FtsH 727452..728150 Pediococcus pentosaceus ATCC 25745 4418117 YP_804191.1 CDS PEPE_0688 NC_008525.1 728250 730913 D DNA polymerase I 728250..730913 Pediococcus pentosaceus ATCC 25745 4418118 YP_804192.1 CDS PEPE_0689 NC_008525.1 730926 731753 D formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase 730926..731753 Pediococcus pentosaceus ATCC 25745 4418119 YP_804193.1 CDS PEPE_0690 NC_008525.1 731758 732348 D dephospho-CoA kinase 731758..732348 Pediococcus pentosaceus ATCC 25745 4418120 YP_804194.1 CDS nrdR NC_008525.1 732380 732853 D transcriptional regulator NrdR 732380..732853 Pediococcus pentosaceus ATCC 25745 4418121 YP_804195.1 CDS PEPE_0692 NC_008525.1 732854 734224 D replicative DNA helicase loader DnaB 732854..734224 Pediococcus pentosaceus ATCC 25745 4418122 YP_804196.1 CDS PEPE_0693 NC_008525.1 734227 735156 D Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 734227..735156 Pediococcus pentosaceus ATCC 25745 4418123 YP_804197.1 CDS PEPE_0694 NC_008525.1 735449 737395 D Ser-tRNA(Thr) hydrolase / threonyl-tRNA synthetase 735449..737395 Pediococcus pentosaceus ATCC 25745 4418124 YP_804198.1 CDS PEPE_0695 NC_008525.1 737548 739287 D membrane signal transduction histidine kinase 737548..739287 Pediococcus pentosaceus ATCC 25745 4418125 YP_804199.1 CDS PEPE_0696 NC_008525.1 739293 740024 D response regulator 739293..740024 Pediococcus pentosaceus ATCC 25745 4418126 YP_804200.1 CDS PEPE_0697 NC_008525.1 740253 740657 D putative effector of murein hydrolase LrgA 740253..740657 Pediococcus pentosaceus ATCC 25745 4418127 YP_804201.1 CDS PEPE_0698 NC_008525.1 740659 741387 D putative effector of murein hydrolase 740659..741387 Pediococcus pentosaceus ATCC 25745 4418128 YP_804202.1 CDS PEPE_0699 NC_008525.1 741626 742126 D IF-3; translation initiation factor 3 741626..742126 Pediococcus pentosaceus ATCC 25745 4418129 YP_804203.1 CDS rpmI NC_008525.1 742151 742348 D 50S ribosomal protein L35 742151..742348 Pediococcus pentosaceus ATCC 25745 4418130 YP_804204.1 CDS rplT NC_008525.1 742405 742758 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 742405..742758 Pediococcus pentosaceus ATCC 25745 4418096 YP_804205.1 CDS PEPE_0702 NC_008525.1 742852 743778 R NADPH:quinone reductase related Zn-dependent oxidoreductase complement(742852..743778) Pediococcus pentosaceus ATCC 25745 4418097 YP_804206.1 CDS PEPE_0703 NC_008525.1 743920 744444 D HAD superfamily hydrolase 743920..744444 Pediococcus pentosaceus ATCC 25745 4418098 YP_804207.1 CDS PEPE_0704 NC_008525.1 744445 745557 D in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 744445..745557 Pediococcus pentosaceus ATCC 25745 4418099 YP_804208.1 CDS PEPE_0705 NC_008525.1 745580 745891 D RNA-binding protein 745580..745891 Pediococcus pentosaceus ATCC 25745 4418100 YP_804209.1 CDS PEPE_0706 NC_008525.1 745908 746552 D nicotinate-nucleotide adenylyltransferase 745908..746552 Pediococcus pentosaceus ATCC 25745 4418101 YP_804210.1 CDS PEPE_0707 NC_008525.1 746542 747150 D HD superfamily NAD metabolism hydrolase 746542..747150 Pediococcus pentosaceus ATCC 25745 4418102 YP_804211.1 CDS PEPE_0708 NC_008525.1 747167 747523 D Iojap family protein 747167..747523 Pediococcus pentosaceus ATCC 25745 4418103 YP_804212.1 CDS PEPE_0709 NC_008525.1 747523 748260 D SAM-dependent methyltransferase 747523..748260 Pediococcus pentosaceus ATCC 25745 4418104 YP_804213.1 CDS PEPE_0710 NC_008525.1 748266 749366 D nucleotidyltransferase 748266..749366 Pediococcus pentosaceus ATCC 25745 4418105 YP_804214.1 CDS PEPE_0711 NC_008525.1 749424 749963 D metal-binding protein 749424..749963 Pediococcus pentosaceus ATCC 25745 4418106 YP_804215.1 CDS rpmF NC_008525.1 750013 750195 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 750013..750195 Pediococcus pentosaceus ATCC 25745 4418107 YP_804216.1 CDS PEPE_0713 NC_008525.1 750429 751847 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 750429..751847 Pediococcus pentosaceus ATCC 25745 4418108 YP_804217.1 CDS PEPE_0714 NC_008525.1 752282 752968 D DNA-binding response regulator 752282..752968 Pediococcus pentosaceus ATCC 25745 4418109 YP_804218.1 CDS PEPE_0715 NC_008525.1 752970 754451 D Signal transduction histidine kinase 752970..754451 Pediococcus pentosaceus ATCC 25745 4418110 YP_804219.1 CDS PEPE_0716 NC_008525.1 754512 755462 R preprotein translocase subunit YidC complement(754512..755462) Pediococcus pentosaceus ATCC 25745 4418111 YP_804220.1 CDS PEPE_0717 NC_008525.1 755542 755814 R acylphosphatase complement(755542..755814) Pediococcus pentosaceus ATCC 25745 4418112 YP_804221.1 CDS PEPE_0718 NC_008525.1 756000 756767 D rRNA methylase 756000..756767 Pediococcus pentosaceus ATCC 25745 4418113 YP_804222.1 CDS PEPE_0719 NC_008525.1 756865 757374 D HD superfamily hydrolase 756865..757374 Pediococcus pentosaceus ATCC 25745 4418079 YP_804223.1 CDS PEPE_0720 NC_008525.1 757392 757724 D transcriptional regulator 757392..757724 Pediococcus pentosaceus ATCC 25745 4418080 YP_804224.1 CDS pheS NC_008525.1 757981 759048 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 757981..759048 Pediococcus pentosaceus ATCC 25745 4418081 YP_804225.1 CDS PEPE_0722 NC_008525.1 759055 761484 D phenylalanyl-tRNA synthetase beta subunit 759055..761484 Pediococcus pentosaceus ATCC 25745 4418082 YP_804226.1 CDS PEPE_0723 NC_008525.1 761571 762737 D periplasmic solute-binding protein 761571..762737 Pediococcus pentosaceus ATCC 25745 4418083 YP_804227.1 CDS PEPE_0724 NC_008525.1 762753 763409 D uridine kinase 762753..763409 Pediococcus pentosaceus ATCC 25745 4418084 YP_804228.1 CDS greA NC_008525.1 763425 763907 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 763425..763907 Pediococcus pentosaceus ATCC 25745 4418085 YP_804229.1 CDS PEPE_0726 NC_008525.1 763934 766549 R hypothetical protein complement(763934..766549) Pediococcus pentosaceus ATCC 25745 4418086 YP_804230.1 CDS PEPE_0727 NC_008525.1 766682 768772 D cell division protein FtsI 766682..768772 Pediococcus pentosaceus ATCC 25745 4418087 YP_804231.1 CDS rpmG NC_008525.1 768871 769020 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 768871..769020 Pediococcus pentosaceus ATCC 25745 4418088 YP_804232.1 CDS PEPE_0729 NC_008525.1 769102 769665 D 5-formyltetrahydrofolate cyclo-ligase 769102..769665 Pediococcus pentosaceus ATCC 25745 4418089 YP_804233.1 CDS PEPE_0730 NC_008525.1 769695 770384 D membrane-associated serine protease 769695..770384 Pediococcus pentosaceus ATCC 25745 4418090 YP_804234.1 CDS PEPE_0731 NC_008525.1 770417 770629 D hypothetical protein 770417..770629 Pediococcus pentosaceus ATCC 25745 4418091 YP_804235.1 CDS PEPE_0732 NC_008525.1 770647 771609 D glucokinase 770647..771609 Pediococcus pentosaceus ATCC 25745 4418092 YP_804236.1 CDS PEPE_0733 NC_008525.1 771641 772060 D rhodanese-related sulfurtransferase 771641..772060 Pediococcus pentosaceus ATCC 25745 4418093 YP_804237.1 CDS PEPE_0734 NC_008525.1 772114 772290 R hypothetical protein complement(772114..772290) Pediococcus pentosaceus ATCC 25745 4418094 YP_804238.1 CDS PEPE_0735 NC_008525.1 772373 773107 D glycerophosphoryl diester phosphodiesterase 772373..773107 Pediococcus pentosaceus ATCC 25745 4418095 YP_804239.1 CDS PEPE_0736 NC_008525.1 773109 774041 D tRNA delta(2)-isopentenylpyrophosphate transferase 773109..774041 Pediococcus pentosaceus ATCC 25745 4418061 YP_804240.1 CDS PEPE_0737 NC_008525.1 774025 775281 D cystathionine beta-lyase family protein 774025..775281 Pediococcus pentosaceus ATCC 25745 4418062 YP_804241.1 CDS PEPE_0738 NC_008525.1 775362 775727 D glutamine synthetase 775362..775727 Pediococcus pentosaceus ATCC 25745 4418063 YP_804242.1 CDS PEPE_0739 NC_008525.1 775762 777102 D L-glutamine synthetase 775762..777102 Pediococcus pentosaceus ATCC 25745 4418064 YP_804243.1 CDS PEPE_0740 NC_008525.1 777251 778126 D hypothetical protein 777251..778126 Pediococcus pentosaceus ATCC 25745 4418065 YP_804244.1 CDS PEPE_0741 NC_008525.1 778119 779036 D hypothetical protein 778119..779036 Pediococcus pentosaceus ATCC 25745 4418066 YP_804245.1 CDS PEPE_0742 NC_008525.1 779046 779585 D dUTPase 779046..779585 Pediococcus pentosaceus ATCC 25745 4418067 YP_804246.1 CDS PEPE_0743 NC_008525.1 779890 780117 D hypothetical protein 779890..780117 Pediococcus pentosaceus ATCC 25745 4418068 YP_804247.1 CDS PEPE_0744 NC_008525.1 780257 780460 R hypothetical protein complement(780257..780460) Pediococcus pentosaceus ATCC 25745 4418069 YP_804248.1 CDS PEPE_0745 NC_008525.1 780798 781937 R integrase complement(780798..781937) Pediococcus pentosaceus ATCC 25745 4418070 YP_804249.1 CDS PEPE_0746 NC_008525.1 782084 782488 R hypothetical protein complement(782084..782488) Pediococcus pentosaceus ATCC 25745 4418071 YP_804250.1 CDS PEPE_0747 NC_008525.1 782546 782983 R hypothetical protein complement(782546..782983) Pediococcus pentosaceus ATCC 25745 4418072 YP_804251.1 CDS PEPE_0748 NC_008525.1 782987 783337 R XRE family transcriptional regulator complement(782987..783337) Pediococcus pentosaceus ATCC 25745 4418073 YP_804252.1 CDS PEPE_0749 NC_008525.1 783594 783803 D hypothetical protein 783594..783803 Pediococcus pentosaceus ATCC 25745 4418074 YP_804253.1 CDS PEPE_0750 NC_008525.1 783817 783996 D hypothetical protein 783817..783996 Pediococcus pentosaceus ATCC 25745 4418075 YP_804254.1 CDS PEPE_0751 NC_008525.1 783986 784126 R hypothetical protein complement(783986..784126) Pediococcus pentosaceus ATCC 25745 4418076 YP_804255.1 CDS PEPE_0752 NC_008525.1 784187 784912 D Phage anti-repressor protein 784187..784912 Pediococcus pentosaceus ATCC 25745 4418077 YP_804256.1 CDS PEPE_0753 NC_008525.1 784915 785259 D hypothetical protein 784915..785259 Pediococcus pentosaceus ATCC 25745 4418078 YP_804257.1 CDS PEPE_0754 NC_008525.1 785259 785357 D hypothetical protein 785259..785357 Pediococcus pentosaceus ATCC 25745 4418044 YP_804258.1 CDS PEPE_0755 NC_008525.1 785441 785548 D hypothetical protein 785441..785548 Pediococcus pentosaceus ATCC 25745 4418045 YP_804259.1 CDS PEPE_0756 NC_008525.1 785535 785996 D hypothetical protein 785535..785996 Pediococcus pentosaceus ATCC 25745 4418046 YP_804260.1 CDS PEPE_0757 NC_008525.1 785993 786649 D hypothetical protein 785993..786649 Pediococcus pentosaceus ATCC 25745 4418047 YP_804261.1 CDS PEPE_0758 NC_008525.1 786652 787050 D single-stranded DNA-binding protein 786652..787050 Pediococcus pentosaceus ATCC 25745 4418048 YP_804262.1 CDS PEPE_0759 NC_008525.1 787088 787972 D hypothetical protein 787088..787972 Pediococcus pentosaceus ATCC 25745 4418049 YP_804263.1 CDS PEPE_0760 NC_008525.1 787956 789203 D replicative DNA helicase 787956..789203 Pediococcus pentosaceus ATCC 25745 4418050 YP_804264.1 CDS PEPE_0761 NC_008525.1 789206 789622 D hypothetical protein 789206..789622 Pediococcus pentosaceus ATCC 25745 4418051 YP_804265.1 CDS PEPE_0762 NC_008525.1 789619 790038 D Holliday junction resolvase 789619..790038 Pediococcus pentosaceus ATCC 25745 4418052 YP_804266.1 CDS PEPE_0763 NC_008525.1 790025 790234 D hypothetical protein 790025..790234 Pediococcus pentosaceus ATCC 25745 4418053 YP_804267.1 CDS PEPE_0764 NC_008525.1 790247 790477 D hypothetical protein 790247..790477 Pediococcus pentosaceus ATCC 25745 4418054 YP_804268.1 CDS PEPE_0765 NC_008525.1 790491 790631 D hypothetical protein 790491..790631 Pediococcus pentosaceus ATCC 25745 4418055 YP_804269.1 CDS PEPE_0766 NC_008525.1 790646 791017 D N-acetylmuramoyl-L-alanine amidase 790646..791017 Pediococcus pentosaceus ATCC 25745 4418056 YP_804270.1 CDS PEPE_0767 NC_008525.1 791061 791525 D hypothetical protein 791061..791525 Pediococcus pentosaceus ATCC 25745 4418057 YP_804271.1 CDS PEPE_0768 NC_008525.1 791537 791830 D hypothetical protein 791537..791830 Pediococcus pentosaceus ATCC 25745 4418058 YP_804272.1 CDS PEPE_0769 NC_008525.1 791832 791996 D hypothetical protein 791832..791996 Pediococcus pentosaceus ATCC 25745 4418059 YP_804273.1 CDS PEPE_0770 NC_008525.1 791997 792563 D hypothetical protein 791997..792563 Pediococcus pentosaceus ATCC 25745 4418060 YP_804274.1 CDS PEPE_0771 NC_008525.1 792563 792751 D hypothetical protein 792563..792751 Pediococcus pentosaceus ATCC 25745 4418026 YP_804275.1 CDS PEPE_0772 NC_008525.1 792744 792911 D hypothetical protein 792744..792911 Pediococcus pentosaceus ATCC 25745 4418027 YP_804276.1 CDS PEPE_0773 NC_008525.1 793070 793366 D hypothetical protein 793070..793366 Pediococcus pentosaceus ATCC 25745 4418028 YP_804277.1 CDS PEPE_0774 NC_008525.1 793366 793707 D hypothetical protein 793366..793707 Pediococcus pentosaceus ATCC 25745 4418029 YP_804278.1 CDS PEPE_0775 NC_008525.1 793710 794129 D hypothetical protein 793710..794129 Pediococcus pentosaceus ATCC 25745 4418030 YP_804279.1 CDS PEPE_0776 NC_008525.1 794201 794374 D hypothetical protein 794201..794374 Pediococcus pentosaceus ATCC 25745 4418031 YP_804280.1 CDS PEPE_0777 NC_008525.1 794441 794899 D hypothetical protein 794441..794899 Pediococcus pentosaceus ATCC 25745 4418032 YP_804281.1 CDS PEPE_0778 NC_008525.1 795080 795322 D hypothetical protein 795080..795322 Pediococcus pentosaceus ATCC 25745 4418033 YP_804282.1 CDS PEPE_0779 NC_008525.1 795368 795508 D hypothetical protein 795368..795508 Pediococcus pentosaceus ATCC 25745 4418034 YP_804283.1 CDS PEPE_0780 NC_008525.1 795647 796228 D hypothetical protein 795647..796228 Pediococcus pentosaceus ATCC 25745 4418035 YP_804284.1 CDS PEPE_0781 NC_008525.1 796309 796806 D hypothetical protein 796309..796806 Pediococcus pentosaceus ATCC 25745 4418036 YP_804285.1 CDS PEPE_0782 NC_008525.1 796796 798067 D Phage terminase large subunit 796796..798067 Pediococcus pentosaceus ATCC 25745 4418037 YP_804286.1 CDS PEPE_0783 NC_008525.1 798075 799478 D Phage portal protein, SPP1 Gp6-like 798075..799478 Pediococcus pentosaceus ATCC 25745 4418038 YP_804287.1 CDS PEPE_0784 NC_008525.1 799459 800424 D Phage Mu protein F like protein 799459..800424 Pediococcus pentosaceus ATCC 25745 4418039 YP_804288.1 CDS PEPE_0785 NC_008525.1 800427 800642 D hypothetical protein 800427..800642 Pediococcus pentosaceus ATCC 25745 4418040 YP_804289.1 CDS PEPE_0786 NC_008525.1 800752 801363 D hypothetical protein 800752..801363 Pediococcus pentosaceus ATCC 25745 4418041 YP_804290.1 CDS PEPE_0787 NC_008525.1 801378 802292 D hypothetical protein 801378..802292 Pediococcus pentosaceus ATCC 25745 4418042 YP_804291.1 CDS PEPE_0788 NC_008525.1 802343 802576 D hypothetical protein 802343..802576 Pediococcus pentosaceus ATCC 25745 4418043 YP_804292.1 CDS PEPE_0789 NC_008525.1 802588 802959 D hypothetical protein 802588..802959 Pediococcus pentosaceus ATCC 25745 4418009 YP_804293.1 CDS PEPE_0790 NC_008525.1 802964 803272 D hypothetical protein 802964..803272 Pediococcus pentosaceus ATCC 25745 4418010 YP_804294.1 CDS PEPE_0791 NC_008525.1 803265 803606 D hypothetical protein 803265..803606 Pediococcus pentosaceus ATCC 25745 4418011 YP_804295.1 CDS PEPE_0792 NC_008525.1 803631 804014 D hypothetical protein 803631..804014 Pediococcus pentosaceus ATCC 25745 4418012 YP_804296.1 CDS PEPE_0793 NC_008525.1 804026 804610 D hypothetical protein 804026..804610 Pediococcus pentosaceus ATCC 25745 4418013 YP_804297.1 CDS PEPE_0794 NC_008525.1 804687 804965 D hypothetical protein 804687..804965 Pediococcus pentosaceus ATCC 25745 4418014 YP_804298.1 CDS PEPE_0795 NC_008525.1 805105 805446 D hypothetical protein 805105..805446 Pediococcus pentosaceus ATCC 25745 4418015 YP_804299.1 CDS PEPE_0796 NC_008525.1 805593 805871 D hypothetical protein 805593..805871 Pediococcus pentosaceus ATCC 25745 4418016 YP_804300.1 CDS PEPE_0797 NC_008525.1 805855 808875 D minor tail protein gp26-like 805855..808875 Pediococcus pentosaceus ATCC 25745 4418017 YP_804301.1 CDS PEPE_0798 NC_008525.1 808875 809639 D hypothetical protein 808875..809639 Pediococcus pentosaceus ATCC 25745 4418018 YP_804302.1 CDS PEPE_0799 NC_008525.1 809639 812599 D enterolysin A. metallo peptidase. MEROPS family M23B 809639..812599 Pediococcus pentosaceus ATCC 25745 4418019 YP_804303.1 CDS PEPE_0800 NC_008525.1 812583 812996 D hypothetical protein 812583..812996 Pediococcus pentosaceus ATCC 25745 4418020 YP_804304.1 CDS PEPE_0801 NC_008525.1 813000 814829 D phosphodiesterase 813000..814829 Pediococcus pentosaceus ATCC 25745 4418021 YP_804305.1 CDS PEPE_0802 NC_008525.1 814841 815581 D hypothetical protein 814841..815581 Pediococcus pentosaceus ATCC 25745 4418022 YP_804306.1 CDS PEPE_0803 NC_008525.1 815581 815922 D hypothetical protein 815581..815922 Pediococcus pentosaceus ATCC 25745 4418023 YP_804307.1 CDS PEPE_0804 NC_008525.1 815919 816074 D hypothetical protein 815919..816074 Pediococcus pentosaceus ATCC 25745 4418024 YP_804308.1 CDS PEPE_0805 NC_008525.1 816137 816739 D hypothetical protein 816137..816739 Pediococcus pentosaceus ATCC 25745 4418025 YP_804309.1 CDS PEPE_0806 NC_008525.1 816782 817183 D Phage-related holin (lysis protein) 816782..817183 Pediococcus pentosaceus ATCC 25745 4417992 YP_804310.1 CDS PEPE_0807 NC_008525.1 817167 818483 D Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 817167..818483 Pediococcus pentosaceus ATCC 25745 4417993 YP_804311.1 CDS PEPE_0809 NC_008525.1 819017 819529 D hypothetical protein 819017..819529 Pediococcus pentosaceus ATCC 25745 4417995 YP_804312.1 CDS PEPE_0810 NC_008525.1 819863 820492 D TetR family transcriptional regulator 819863..820492 Pediococcus pentosaceus ATCC 25745 4417996 YP_804313.1 CDS PEPE_0811 NC_008525.1 820622 820930 D 50S ribosomal protein L21 820622..820930 Pediococcus pentosaceus ATCC 25745 4417997 YP_804314.1 CDS PEPE_0812 NC_008525.1 820952 821278 D ribosomal protein 820952..821278 Pediococcus pentosaceus ATCC 25745 4417998 YP_804315.1 CDS rpmA NC_008525.1 821302 821589 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 821302..821589 Pediococcus pentosaceus ATCC 25745 4417999 YP_804316.1 CDS PEPE_0814 NC_008525.1 821714 822277 D translation elongation factor P (EF-P) 821714..822277 Pediococcus pentosaceus ATCC 25745 4418000 YP_804317.1 CDS PEPE_0815 NC_008525.1 822295 822723 D hypothetical protein 822295..822723 Pediococcus pentosaceus ATCC 25745 4418001 YP_804318.1 CDS PEPE_0816 NC_008525.1 822723 823124 D NusB antitermination factor 822723..823124 Pediococcus pentosaceus ATCC 25745 4418002 YP_804319.1 CDS PEPE_0817 NC_008525.1 823250 824101 D methenyltetrahydrofolate cyclohydrolase 823250..824101 Pediococcus pentosaceus ATCC 25745 4418003 YP_804320.1 CDS xseA NC_008525.1 824102 825445 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 824102..825445 Pediococcus pentosaceus ATCC 25745 4418004 YP_804321.1 CDS PEPE_0819 NC_008525.1 825445 825681 D exodeoxyribonuclease VII small subunit 825445..825681 Pediococcus pentosaceus ATCC 25745 4418005 YP_804322.1 CDS PEPE_0820 NC_008525.1 825674 826564 D farnesyl-diphosphate synthase 825674..826564 Pediococcus pentosaceus ATCC 25745 4418006 YP_804323.1 CDS PEPE_0821 NC_008525.1 826578 827396 D rRNA methylase 826578..827396 Pediococcus pentosaceus ATCC 25745 4418007 YP_804324.1 CDS PEPE_0822 NC_008525.1 827405 827863 D ArgR family transcriptional regulator 827405..827863 Pediococcus pentosaceus ATCC 25745 4418008 YP_804325.1 CDS PEPE_0823 NC_008525.1 827875 829551 D DNA repair ATPase 827875..829551 Pediococcus pentosaceus ATCC 25745 4417975 YP_804326.1 CDS PEPE_0824 NC_008525.1 829623 829958 R hypothetical protein complement(829623..829958) Pediococcus pentosaceus ATCC 25745 4417976 YP_804327.1 CDS gmk NC_008525.1 830254 830868 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 830254..830868 Pediococcus pentosaceus ATCC 25745 4417977 YP_804328.1 CDS PEPE_0826 NC_008525.1 830870 831079 D DNA-directed RNA polymerase, subunit K/omega 830870..831079 Pediococcus pentosaceus ATCC 25745 4417978 YP_804329.1 CDS PEPE_0827 NC_008525.1 831191 832384 D phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase 831191..832384 Pediococcus pentosaceus ATCC 25745 4417979 YP_804330.1 CDS PEPE_0828 NC_008525.1 832399 834819 D replication restart DNA helicase PriA 832399..834819 Pediococcus pentosaceus ATCC 25745 4417980 YP_804331.1 CDS PEPE_0829 NC_008525.1 834842 835804 D methionyl-tRNA formyltransferase 834842..835804 Pediococcus pentosaceus ATCC 25745 4417981 YP_804332.1 CDS PEPE_0830 NC_008525.1 835788 837122 D tRNA and rRNA cytosine-C5-methylase 835788..837122 Pediococcus pentosaceus ATCC 25745 4417982 YP_804333.1 CDS PEPE_0831 NC_008525.1 837131 837877 D Serine/threonine protein phosphatase 837131..837877 Pediococcus pentosaceus ATCC 25745 4417983 YP_804334.1 CDS PEPE_0832 NC_008525.1 837874 839397 D serine/threonine kinase protein 837874..839397 Pediococcus pentosaceus ATCC 25745 4417984 YP_804335.1 CDS PEPE_0833 NC_008525.1 839408 840337 D GTPase 839408..840337 Pediococcus pentosaceus ATCC 25745 4417985 YP_804336.1 CDS PEPE_0834 NC_008525.1 840334 840981 D ribulose-5-phosphate 3-epimerase 840334..840981 Pediococcus pentosaceus ATCC 25745 4417986 YP_804337.1 CDS PEPE_0835 NC_008525.1 840981 841622 D thiamine pyrophosphokinase 840981..841622 Pediococcus pentosaceus ATCC 25745 4417987 YP_804338.1 CDS rpmB NC_008525.1 841666 841851 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(841666..841851) Pediococcus pentosaceus ATCC 25745 4417988 YP_804339.1 CDS PEPE_0837 NC_008525.1 842151 842513 D hypothetical protein 842151..842513 Pediococcus pentosaceus ATCC 25745 4417989 YP_804340.1 CDS PEPE_0838 NC_008525.1 842541 844229 D dihydroxyacetone kinase-like protein 842541..844229 Pediococcus pentosaceus ATCC 25745 4417990 YP_804341.1 CDS PEPE_0839 NC_008525.1 844280 846307 D ATP-dependent DNA helicase RecG 844280..846307 Pediococcus pentosaceus ATCC 25745 4417991 YP_804342.1 CDS PEPE_0840 NC_008525.1 846324 847367 D phosphate:acyl-[acyl carrier protein] acyltransferase 846324..847367 Pediococcus pentosaceus ATCC 25745 4417957 YP_804343.1 CDS PEPE_0841 NC_008525.1 847406 847648 D Acyl carrier protein 847406..847648 Pediococcus pentosaceus ATCC 25745 4417958 YP_804344.1 CDS rnc NC_008525.1 847745 848443 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 847745..848443 Pediococcus pentosaceus ATCC 25745 4417959 YP_804345.1 CDS PEPE_0843 NC_008525.1 848453 851983 D condensin subunit Smc 848453..851983 Pediococcus pentosaceus ATCC 25745 4417960 YP_804346.1 CDS PEPE_0844 NC_008525.1 852001 853221 D signal recognition particle-docking protein FtsY 852001..853221 Pediococcus pentosaceus ATCC 25745 4417961 YP_804347.1 CDS PEPE_0845 NC_008525.1 853227 853568 D hypothetical protein 853227..853568 Pediococcus pentosaceus ATCC 25745 4417962 YP_804348.1 CDS PEPE_0846 NC_008525.1 853586 855016 D signal recognition particle subunit FFH/SRP54 (srp54) 853586..855016 Pediococcus pentosaceus ATCC 25745 4417963 YP_804349.1 CDS rpsP NC_008525.1 855375 855647 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 855375..855647 Pediococcus pentosaceus ATCC 25745 4417964 YP_804350.1 CDS PEPE_0848 NC_008525.1 855722 856237 D 16S rRNA processing protein RimM 855722..856237 Pediococcus pentosaceus ATCC 25745 4417965 YP_804351.1 CDS PEPE_0849 NC_008525.1 856237 856974 D tRNA (Guanine37-N1) methyltransferase 856237..856974 Pediococcus pentosaceus ATCC 25745 4417966 YP_804352.1 CDS rplS NC_008525.1 857117 857476 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 857117..857476 Pediococcus pentosaceus ATCC 25745 4417967 YP_804353.1 CDS PEPE_0851 NC_008525.1 857707 857778 D hypothetical protein 857707..857778 Pediococcus pentosaceus ATCC 25745 4417968 YP_804354.1 CDS PEPE_0853 NC_008525.1 858262 858594 R hypothetical protein complement(858262..858594) Pediococcus pentosaceus ATCC 25745 4417970 YP_804355.1 CDS PEPE_0854 NC_008525.1 859008 859457 D (3R)-hydroxymyristoyl-ACP dehydratase 859008..859457 Pediococcus pentosaceus ATCC 25745 4417971 YP_804356.1 CDS PEPE_0855 NC_008525.1 859471 860430 D 3-oxoacyl-ACP synthase 859471..860430 Pediococcus pentosaceus ATCC 25745 4417972 YP_804357.1 CDS PEPE_0856 NC_008525.1 860469 860708 D Acyl carrier protein 860469..860708 Pediococcus pentosaceus ATCC 25745 4417973 YP_804358.1 CDS PEPE_0857 NC_008525.1 860726 861658 D ACP S-malonyltransferase 860726..861658 Pediococcus pentosaceus ATCC 25745 4417974 YP_804359.1 CDS PEPE_0858 NC_008525.1 861659 862387 D 3-oxoacyl-ACP reductase 861659..862387 Pediococcus pentosaceus ATCC 25745 4418164 YP_804360.1 CDS PEPE_0859 NC_008525.1 862406 863632 D 3-oxoacyl-ACP synthase 862406..863632 Pediococcus pentosaceus ATCC 25745 4418165 YP_804361.1 CDS PEPE_0860 NC_008525.1 863635 864075 D biotin carboxyl carrier protein 863635..864075 Pediococcus pentosaceus ATCC 25745 4418166 YP_804362.1 CDS PEPE_0861 NC_008525.1 864075 864488 D (3R)-hydroxymyristoyl-ACP dehydratase 864075..864488 Pediococcus pentosaceus ATCC 25745 4418167 YP_804363.1 CDS PEPE_0862 NC_008525.1 864506 865873 D biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 864506..865873 Pediococcus pentosaceus ATCC 25745 4418168 YP_804364.1 CDS PEPE_0863 NC_008525.1 865863 866693 D acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 865863..866693 Pediococcus pentosaceus ATCC 25745 4418169 YP_804365.1 CDS PEPE_0864 NC_008525.1 866706 867473 D acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 866706..867473 Pediococcus pentosaceus ATCC 25745 4418170 YP_804366.1 CDS PEPE_0865 NC_008525.1 867490 868248 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 867490..868248 Pediococcus pentosaceus ATCC 25745 4418171 YP_804367.1 CDS PEPE_0866 NC_008525.1 868404 868478 D hypothetical protein 868404..868478 Pediococcus pentosaceus ATCC 25745 4418172 YP_804368.1 CDS PEPE_0867 NC_008525.1 868600 869976 D amino acid transporter 868600..869976 Pediococcus pentosaceus ATCC 25745 4418173 YP_804369.1 CDS PEPE_0868 NC_008525.1 870137 871303 D hydroxymethylglutaryl-CoA synthase 870137..871303 Pediococcus pentosaceus ATCC 25745 4418174 YP_804370.1 CDS PEPE_0869 NC_008525.1 871343 871942 R hypothetical protein complement(871343..871942) Pediococcus pentosaceus ATCC 25745 4418175 YP_804371.1 CDS PEPE_0870 NC_008525.1 872021 872650 R XRE family transcriptional regulator complement(872021..872650) Pediococcus pentosaceus ATCC 25745 4418176 YP_804372.1 CDS PEPE_0871 NC_008525.1 872784 873032 D hypothetical protein 872784..873032 Pediococcus pentosaceus ATCC 25745 4418177 YP_804373.1 CDS PEPE_0872 NC_008525.1 873103 873324 D hypothetical protein 873103..873324 Pediococcus pentosaceus ATCC 25745 4418178 YP_804374.1 CDS PEPE_0873 NC_008525.1 873336 873878 R 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(873336..873878) Pediococcus pentosaceus ATCC 25745 4418179 YP_804375.1 CDS PEPE_0874 NC_008525.1 874055 874810 D O-methyltransferase 874055..874810 Pediococcus pentosaceus ATCC 25745 4418180 YP_804376.1 CDS PEPE_0875 NC_008525.1 874791 875078 D URI-like endonuclease 874791..875078 Pediococcus pentosaceus ATCC 25745 4417835 YP_804377.1 CDS PEPE_0876 NC_008525.1 875199 876194 D D-lactate dehydrogenase, LdhA 875199..876194 Pediococcus pentosaceus ATCC 25745 4417836 YP_804378.1 CDS PEPE_0877 NC_008525.1 876346 877128 D 30S ribosomal protein S2 876346..877128 Pediococcus pentosaceus ATCC 25745 4417837 YP_804379.1 CDS tsf NC_008525.1 877244 878122 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 877244..878122 Pediococcus pentosaceus ATCC 25745 4417838 YP_804380.1 CDS pyrH NC_008525.1 878276 879001 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 878276..879001 Pediococcus pentosaceus ATCC 25745 4417839 YP_804381.1 CDS PEPE_0880 NC_008525.1 879001 879561 D ribosome recycling factor 879001..879561 Pediococcus pentosaceus ATCC 25745 4417840 YP_804382.1 CDS PEPE_0881 NC_008525.1 879819 880568 D undecaprenyl pyrophosphate synthetase 879819..880568 Pediococcus pentosaceus ATCC 25745 4417841 YP_804383.1 CDS PEPE_0882 NC_008525.1 880537 881364 D CDP-diglyceride synthetase 880537..881364 Pediococcus pentosaceus ATCC 25745 4417842 YP_804384.1 CDS PEPE_0883 NC_008525.1 881388 882650 D peptidase RseP 881388..882650 Pediococcus pentosaceus ATCC 25745 4417843 YP_804385.1 CDS PEPE_0884 NC_008525.1 882678 884393 D prolyl-tRNA synthetase 882678..884393 Pediococcus pentosaceus ATCC 25745 4417844 YP_804386.1 CDS polC NC_008525.1 884487 888800 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 884487..888800 Pediococcus pentosaceus ATCC 25745 4417845 YP_804387.1 CDS PEPE_0886 NC_008525.1 888920 889396 D hypothetical protein 888920..889396 Pediococcus pentosaceus ATCC 25745 4417846 YP_804388.1 CDS PEPE_0887 NC_008525.1 889410 890498 D transcription elongation factor 889410..890498 Pediococcus pentosaceus ATCC 25745 4417847 YP_804389.1 CDS PEPE_0888 NC_008525.1 890520 890813 D nucleic-acid-binding protein implicated in transcription termination 890520..890813 Pediococcus pentosaceus ATCC 25745 4417848 YP_804390.1 CDS PEPE_0889 NC_008525.1 890814 891116 D 50S ribosomal protein L7AE 890814..891116 Pediococcus pentosaceus ATCC 25745 4417849 YP_804391.1 CDS infB NC_008525.1 891129 893885 D IF-2; GTPase; Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 891129..893885 Pediococcus pentosaceus ATCC 25745 4417850 YP_804392.1 CDS PEPE_0891 NC_008525.1 893902 894252 D ribosome-binding factor A 893902..894252 Pediococcus pentosaceus ATCC 25745 4417851 YP_804393.1 CDS truB NC_008525.1 894391 895290 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 894391..895290 Pediococcus pentosaceus ATCC 25745 4417852 YP_804394.1 CDS PEPE_0893 NC_008525.1 895294 896238 D FAD synthase 895294..896238 Pediococcus pentosaceus ATCC 25745 4417871 YP_804395.1 CDS hrcA NC_008525.1 896346 897386 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 896346..897386 Pediococcus pentosaceus ATCC 25745 4417872 YP_804396.1 CDS PEPE_0895 NC_008525.1 897397 897969 D molecular chaperone GrpE (heat shock protein) 897397..897969 Pediococcus pentosaceus ATCC 25745 4417873 YP_804397.1 CDS dnaK NC_008525.1 897995 899854 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 897995..899854 Pediococcus pentosaceus ATCC 25745 4417874 YP_804398.1 CDS PEPE_0897 NC_008525.1 899951 901075 D DnaJ-like molecular chaperone 899951..901075 Pediococcus pentosaceus ATCC 25745 4417875 YP_804399.1 CDS PEPE_0898 NC_008525.1 901181 901408 R hypothetical protein complement(901181..901408) Pediococcus pentosaceus ATCC 25745 4417876 YP_804400.1 CDS PEPE_0899 NC_008525.1 901537 902007 R tryptophan-rich sensory protein complement(901537..902007) Pediococcus pentosaceus ATCC 25745 4417877 YP_804401.1 CDS PEPE_0900 NC_008525.1 902087 902257 D hypothetical protein 902087..902257 Pediococcus pentosaceus ATCC 25745 4417878 YP_804402.1 CDS PEPE_0901 NC_008525.1 902244 902726 D hypothetical protein 902244..902726 Pediococcus pentosaceus ATCC 25745 4417879 YP_804403.1 CDS PEPE_0902 NC_008525.1 902743 902964 D hypothetical protein 902743..902964 Pediococcus pentosaceus ATCC 25745 4417880 YP_804404.1 CDS fabG NC_008525.1 902965 903705 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 902965..903705 Pediococcus pentosaceus ATCC 25745 4417881 YP_804405.1 CDS PEPE_0905 NC_008525.1 904542 904790 D hypothetical protein 904542..904790 Pediococcus pentosaceus ATCC 25745 4417883 YP_804406.1 CDS PEPE_0906 NC_008525.1 904961 905761 R Mn-containing catalase complement(904961..905761) Pediococcus pentosaceus ATCC 25745 4417884 YP_804407.1 CDS PEPE_0907 NC_008525.1 906262 906495 R hypothetical protein complement(906262..906495) Pediococcus pentosaceus ATCC 25745 4417885 YP_804408.1 CDS PEPE_0908 NC_008525.1 906574 906804 R hypothetical protein complement(906574..906804) Pediococcus pentosaceus ATCC 25745 4417886 YP_804409.1 CDS PEPE_0909 NC_008525.1 906892 907017 D hypothetical protein 906892..907017 Pediococcus pentosaceus ATCC 25745 4417887 YP_804410.1 CDS PEPE_0910 NC_008525.1 908120 909961 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(908120..909961) Pediococcus pentosaceus ATCC 25745 4417939 YP_804411.1 CDS PEPE_0911 NC_008525.1 910188 910796 D hypothetical protein 910188..910796 Pediococcus pentosaceus ATCC 25745 4417940 YP_804412.1 CDS PEPE_0912 NC_008525.1 910836 911897 R di- and tricarboxylate transporter complement(910836..911897) Pediococcus pentosaceus ATCC 25745 4417941 YP_804413.1 CDS PEPE_0913 NC_008525.1 912025 913266 R dipeptidase complement(912025..913266) Pediococcus pentosaceus ATCC 25745 4417942 YP_804414.1 CDS PEPE_0914 NC_008525.1 913572 913760 D 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown; 4-oxalocrotonate tautomerase 913572..913760 Pediococcus pentosaceus ATCC 25745 4417943 YP_804415.1 CDS PEPE_0915 NC_008525.1 913808 914620 R HAD superfamily hydrolase complement(913808..914620) Pediococcus pentosaceus ATCC 25745 4417944 YP_804416.1 CDS PEPE_0916 NC_008525.1 914798 916174 D tRNA and rRNA cytosine-C5-methylase 914798..916174 Pediococcus pentosaceus ATCC 25745 4417945 YP_804417.1 CDS PEPE_0917 NC_008525.1 916673 917626 D Beta-lactamase class A 916673..917626 Pediococcus pentosaceus ATCC 25745 4417946 YP_804418.1 CDS PEPE_0918 NC_008525.1 917706 919139 R hypothetical protein complement(917706..919139) Pediococcus pentosaceus ATCC 25745 4417947 YP_804419.1 CDS PEPE_0919 NC_008525.1 919439 920494 D coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase-like protein 919439..920494 Pediococcus pentosaceus ATCC 25745 4417948 YP_804420.1 CDS PEPE_0920 NC_008525.1 920494 921171 D dinucleotide-binding protein 920494..921171 Pediococcus pentosaceus ATCC 25745 4417949 YP_804421.1 CDS PEPE_0921 NC_008525.1 921259 922038 R esterase/lipase complement(921259..922038) Pediococcus pentosaceus ATCC 25745 4417950 YP_804422.1 CDS PEPE_0922 NC_008525.1 922326 923435 D L-lactate dehydrogenase (FMN-dependent) related alpha-hydroxy acid dehydrogenase 922326..923435 Pediococcus pentosaceus ATCC 25745 4417951 YP_804423.1 CDS PEPE_0923 NC_008525.1 923588 924139 D integral membrane protein 923588..924139 Pediococcus pentosaceus ATCC 25745 4417952 YP_804424.1 CDS PEPE_0924 NC_008525.1 924317 925300 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(924317..925300) Pediococcus pentosaceus ATCC 25745 4417953 YP_804425.1 CDS PEPE_0925 NC_008525.1 925309 926391 R phosphomevalonate kinase complement(925309..926391) Pediococcus pentosaceus ATCC 25745 4417954 YP_804426.1 CDS PEPE_0926 NC_008525.1 926405 927388 R diphosphomevalonate decarboxylase complement(926405..927388) Pediococcus pentosaceus ATCC 25745 4417955 YP_804427.1 CDS PEPE_0927 NC_008525.1 927407 928327 R mevalonate kinase complement(927407..928327) Pediococcus pentosaceus ATCC 25745 4417956 YP_804428.1 CDS PEPE_0928 NC_008525.1 928444 931233 D Rad3-related DNA helicase 928444..931233 Pediococcus pentosaceus ATCC 25745 4417740 YP_804429.1 CDS PEPE_0929 NC_008525.1 931294 931785 D hypothetical protein 931294..931785 Pediococcus pentosaceus ATCC 25745 4417741 YP_804430.1 CDS PEPE_0930 NC_008525.1 931798 932502 D DNA replication protein DnaD 931798..932502 Pediococcus pentosaceus ATCC 25745 4417742 YP_804431.1 CDS PEPE_0931 NC_008525.1 932540 934849 R membrane carboxypeptidase (penicillin-binding protein) complement(932540..934849) Pediococcus pentosaceus ATCC 25745 4417743 YP_804432.1 CDS recU NC_008525.1 934883 935488 R functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease complement(934883..935488) Pediococcus pentosaceus ATCC 25745 4417744 YP_804433.1 CDS PEPE_0933 NC_008525.1 935625 936176 D hypothetical protein 935625..936176 Pediococcus pentosaceus ATCC 25745 4417745 YP_804434.1 CDS PEPE_0934 NC_008525.1 936252 936593 D GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB 936252..936593 Pediococcus pentosaceus ATCC 25745 4417746 YP_804435.1 CDS PEPE_0936 NC_008525.1 937075 938205 D N6-adenine-specific DNA methylase 937075..938205 Pediococcus pentosaceus ATCC 25745 4417748 YP_804436.1 CDS PEPE_0937 NC_008525.1 938215 939309 D glycine/D-amino acid oxidase (deaminating) 938215..939309 Pediococcus pentosaceus ATCC 25745 4417749 YP_804437.1 CDS PEPE_0938 NC_008525.1 939323 939709 D pore-forming protein 939323..939709 Pediococcus pentosaceus ATCC 25745 4417750 YP_804438.1 CDS PEPE_0939 NC_008525.1 939717 941378 D formate-tetrahydrofolate ligase 939717..941378 Pediococcus pentosaceus ATCC 25745 4417751 YP_804439.1 CDS PEPE_0940 NC_008525.1 941392 941844 D signal peptidase II 941392..941844 Pediococcus pentosaceus ATCC 25745 4417752 YP_804440.1 CDS PEPE_0941 NC_008525.1 941854 942756 D ribosomal large subunit pseudouridine synthase D 941854..942756 Pediococcus pentosaceus ATCC 25745 4417753 YP_804441.1 CDS PEPE_0942 NC_008525.1 942917 943450 D pyrimidine operon attenuation protein/uracil phosphoribosyltransferase 942917..943450 Pediococcus pentosaceus ATCC 25745 4417754 YP_804442.1 CDS PEPE_0943 NC_008525.1 943478 944557 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 943478..944557 Pediococcus pentosaceus ATCC 25745 4417755 YP_804443.1 CDS PEPE_0944 NC_008525.1 944559 947015 D carbamoyl-phosphate synthase large subunit 944559..947015 Pediococcus pentosaceus ATCC 25745 4417756 YP_804444.1 CDS PEPE_0945 NC_008525.1 947073 948779 R fibronectin-binding protein complement(947073..948779) Pediococcus pentosaceus ATCC 25745 4417757 YP_804445.1 CDS PEPE_0946 NC_008525.1 948925 949335 D transcriptional regulator 948925..949335 Pediococcus pentosaceus ATCC 25745 4417758 YP_804446.1 CDS PEPE_0947 NC_008525.1 949422 950285 D hypothetical protein 949422..950285 Pediococcus pentosaceus ATCC 25745 4417759 YP_804447.1 CDS PEPE_0948 NC_008525.1 950270 950632 R camphor resistance protein CrcB complement(950270..950632) Pediococcus pentosaceus ATCC 25745 4417760 YP_804448.1 CDS PEPE_0950 NC_008525.1 951211 951567 D hypothetical protein 951211..951567 Pediococcus pentosaceus ATCC 25745 4417762 YP_804449.1 CDS PEPE_0951 NC_008525.1 951916 952242 R membrane transporter complement(951916..952242) Pediococcus pentosaceus ATCC 25745 4417763 YP_804450.1 CDS PEPE_0952 NC_008525.1 952766 954268 D amino acid transporter 952766..954268 Pediococcus pentosaceus ATCC 25745 4417764 YP_804451.1 CDS PEPE_0953 NC_008525.1 954317 954832 R peptide methionine sulfoxide reductase complement(954317..954832) Pediococcus pentosaceus ATCC 25745 4417765 YP_804452.1 CDS PEPE_0954 NC_008525.1 954848 955291 R peptide methionine sulfoxide reductase domain-containing protein complement(954848..955291) Pediococcus pentosaceus ATCC 25745 4417766 YP_804453.1 CDS PEPE_0955 NC_008525.1 955377 956516 R glycerate kinase complement(955377..956516) Pediococcus pentosaceus ATCC 25745 4417767 YP_804454.1 CDS PEPE_0956 NC_008525.1 956618 957550 R catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase complement(956618..957550) Pediococcus pentosaceus ATCC 25745 4417768 YP_804455.1 CDS PEPE_0957 NC_008525.1 957566 958537 R transcriptional regulator complement(957566..958537) Pediococcus pentosaceus ATCC 25745 4417769 YP_804456.1 CDS PEPE_0958 NC_008525.1 958636 961089 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(958636..961089) Pediococcus pentosaceus ATCC 25745 4417770 YP_804457.1 CDS PEPE_0959 NC_008525.1 961103 963142 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(961103..963142) Pediococcus pentosaceus ATCC 25745 4417771 YP_804458.1 CDS PEPE_0960 NC_008525.1 963304 963912 D acyl-phosphate glycerol-3-phosphate acyltransferase 963304..963912 Pediococcus pentosaceus ATCC 25745 4417772 YP_804459.1 CDS PEPE_0961 NC_008525.1 963999 964880 R galactose mutarotase-like protein complement(963999..964880) Pediococcus pentosaceus ATCC 25745 4417773 YP_804460.1 CDS hslU NC_008525.1 964898 966310 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(964898..966310) Pediococcus pentosaceus ATCC 25745 4417774 YP_804461.1 CDS PEPE_0963 NC_008525.1 966314 966868 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(966314..966868) Pediococcus pentosaceus ATCC 25745 4417775 YP_804462.1 CDS PEPE_0964 NC_008525.1 966887 967792 R tyrosine recombinase XerC subunit complement(966887..967792) Pediococcus pentosaceus ATCC 25745 4417776 YP_804463.1 CDS PEPE_0965 NC_008525.1 967864 969936 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(967864..969936) Pediococcus pentosaceus ATCC 25745 4417777 YP_804464.1 CDS PEPE_0966 NC_008525.1 970246 970905 R HAD family sugar phosphatase complement(970246..970905) Pediococcus pentosaceus ATCC 25745 4417778 YP_804465.1 CDS PEPE_0967 NC_008525.1 970921 973173 R maltose phosphorylase complement(970921..973173) Pediococcus pentosaceus ATCC 25745 4417779 YP_804466.1 CDS PEPE_0968 NC_008525.1 973199 974542 R major facilitator superfamily permease complement(973199..974542) Pediococcus pentosaceus ATCC 25745 4417780 YP_804467.1 CDS PEPE_0969 NC_008525.1 974686 975639 R LacI family transcription regulator complement(974686..975639) Pediococcus pentosaceus ATCC 25745 4417781 YP_804468.1 CDS PEPE_0970 NC_008525.1 975739 976599 R Rossmann fold nucleotide-binding protein for DNA uptake complement(975739..976599) Pediococcus pentosaceus ATCC 25745 4417782 YP_804469.1 CDS PEPE_0971 NC_008525.1 976640 977407 R ribonuclease HII complement(976640..977407) Pediococcus pentosaceus ATCC 25745 4417783 YP_804470.1 CDS PEPE_0972 NC_008525.1 977394 978257 R GTP-binding protein YlqF complement(977394..978257) Pediococcus pentosaceus ATCC 25745 4417784 YP_804471.1 CDS PEPE_0973 NC_008525.1 979053 980387 R hypothetical protein complement(979053..980387) Pediococcus pentosaceus ATCC 25745 4417785 YP_804472.1 CDS PEPE_0974 NC_008525.1 980589 982619 R hypothetical protein complement(980589..982619) Pediococcus pentosaceus ATCC 25745 4417786 YP_804473.1 CDS PEPE_0975 NC_008525.1 983038 983364 R hypothetical protein complement(983038..983364) Pediococcus pentosaceus ATCC 25745 4417787 YP_804474.1 CDS PEPE_0976 NC_008525.1 983632 985746 R ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones complement(983632..985746) Pediococcus pentosaceus ATCC 25745 4417788 YP_804475.1 CDS PEPE_0977 NC_008525.1 986030 988075 R hypothetical protein complement(986030..988075) Pediococcus pentosaceus ATCC 25745 4417789 YP_804476.1 CDS PEPE_0978 NC_008525.1 988062 988400 R hypothetical protein complement(988062..988400) Pediococcus pentosaceus ATCC 25745 4417790 YP_804477.1 CDS PEPE_0979 NC_008525.1 988402 989460 R cell surface protein complement(988402..989460) Pediococcus pentosaceus ATCC 25745 4417651 YP_804478.1 CDS PEPE_0980 NC_008525.1 989447 990100 R cell surface protein complement(989447..990100) Pediococcus pentosaceus ATCC 25745 4417652 YP_804479.1 CDS PEPE_0981 NC_008525.1 990256 991047 R hypothetical protein complement(990256..991047) Pediococcus pentosaceus ATCC 25745 4417653 YP_804480.1 CDS PEPE_0982 NC_008525.1 992277 992519 R hypothetical protein complement(992277..992519) Pediococcus pentosaceus ATCC 25745 4417654 YP_804481.1 CDS PEPE_0983 NC_008525.1 992637 993014 R hypothetical protein complement(992637..993014) Pediococcus pentosaceus ATCC 25745 4417655 YP_804482.1 CDS PEPE_0984 NC_008525.1 993024 993287 R hypothetical protein complement(993024..993287) Pediococcus pentosaceus ATCC 25745 4417656 YP_804483.1 CDS PEPE_0985 NC_008525.1 993287 994450 R Lyzozyme M1 (1,4-beta-N-acetylmuramidase) complement(993287..994450) Pediococcus pentosaceus ATCC 25745 4417657 YP_804484.1 CDS PEPE_0986 NC_008525.1 994462 994821 R hypothetical protein complement(994462..994821) Pediococcus pentosaceus ATCC 25745 4417658 YP_804485.1 CDS PEPE_0987 NC_008525.1 994855 995103 R hypothetical protein complement(994855..995103) Pediococcus pentosaceus ATCC 25745 4417659 YP_804486.1 CDS PEPE_0988 NC_008525.1 995116 995319 R hypothetical protein complement(995116..995319) Pediococcus pentosaceus ATCC 25745 4417660 YP_804487.1 CDS PEPE_0989 NC_008525.1 995312 995539 R hypothetical protein complement(995312..995539) Pediococcus pentosaceus ATCC 25745 4417661 YP_804488.1 CDS PEPE_0990 NC_008525.1 995532 998720 R hypothetical protein complement(995532..998720) Pediococcus pentosaceus ATCC 25745 4417662 YP_804489.1 CDS PEPE_0991 NC_008525.1 998737 1001127 R hypothetical protein complement(998737..1001127) Pediococcus pentosaceus ATCC 25745 4417663 YP_804490.1 CDS PEPE_0992 NC_008525.1 1001148 1002914 R hypothetical protein complement(1001148..1002914) Pediococcus pentosaceus ATCC 25745 4417664 YP_804491.1 CDS PEPE_0993 NC_008525.1 1002992 1007752 R SLT domain-containing protein complement(1002992..1007752) Pediococcus pentosaceus ATCC 25745 4417665 YP_804492.1 CDS PEPE_0994 NC_008525.1 1007784 1007969 R hypothetical protein complement(1007784..1007969) Pediococcus pentosaceus ATCC 25745 4417666 YP_804493.1 CDS PEPE_0995 NC_008525.1 1008014 1008388 R hypothetical protein complement(1008014..1008388) Pediococcus pentosaceus ATCC 25745 4417667 YP_804494.1 CDS PEPE_0996 NC_008525.1 1008462 1009115 R hypothetical protein complement(1008462..1009115) Pediococcus pentosaceus ATCC 25745 4417668 YP_804495.1 CDS PEPE_0997 NC_008525.1 1009131 1009511 R hypothetical protein complement(1009131..1009511) Pediococcus pentosaceus ATCC 25745 4417634 YP_804496.1 CDS PEPE_0998 NC_008525.1 1009511 1009918 R hypothetical protein complement(1009511..1009918) Pediococcus pentosaceus ATCC 25745 4417635 YP_804497.1 CDS PEPE_0999 NC_008525.1 1009921 1010268 R hypothetical protein complement(1009921..1010268) Pediococcus pentosaceus ATCC 25745 4417636 YP_804498.1 CDS PEPE_1000 NC_008525.1 1010258 1010590 R hypothetical protein complement(1010258..1010590) Pediococcus pentosaceus ATCC 25745 4417637 YP_804499.1 CDS PEPE_1001 NC_008525.1 1010664 1011896 R phage phi-C31 gp36 major capsid-like protein complement(1010664..1011896) Pediococcus pentosaceus ATCC 25745 4417638 YP_804500.1 CDS PEPE_1002 NC_008525.1 1011896 1012651 R protease subunit of ATP-dependent Clp protease complement(1011896..1012651) Pediococcus pentosaceus ATCC 25745 4417639 YP_804501.1 CDS PEPE_1003 NC_008525.1 1012629 1013792 R hypothetical protein complement(1012629..1013792) Pediococcus pentosaceus ATCC 25745 4417640 YP_804502.1 CDS PEPE_1004 NC_008525.1 1013795 1013989 R hypothetical protein complement(1013795..1013989) Pediococcus pentosaceus ATCC 25745 4417641 YP_804503.1 CDS PEPE_1005 NC_008525.1 1013979 1015877 R Phage terminase-like protein, large subunit complement(1013979..1015877) Pediococcus pentosaceus ATCC 25745 4417642 YP_804504.1 CDS PEPE_1006 NC_008525.1 1015880 1016338 R Phage terminase, small subunit complement(1015880..1016338) Pediococcus pentosaceus ATCC 25745 4417643 YP_804505.1 CDS PEPE_1007 NC_008525.1 1016535 1017044 R restriction endonuclease complement(1016535..1017044) Pediococcus pentosaceus ATCC 25745 4417644 YP_804506.1 CDS PEPE_1008 NC_008525.1 1017582 1018013 R hypothetical protein complement(1017582..1018013) Pediococcus pentosaceus ATCC 25745 4417645 YP_804507.1 CDS PEPE_1009 NC_008525.1 1018004 1018396 R hypothetical protein complement(1018004..1018396) Pediococcus pentosaceus ATCC 25745 4417646 YP_804508.1 CDS PEPE_1010 NC_008525.1 1018476 1018940 R hypothetical protein complement(1018476..1018940) Pediococcus pentosaceus ATCC 25745 4417647 YP_804510.1 CDS PEPE_1012 NC_008525.1 1018992 1019324 R hypothetical protein complement(1018992..1019324) Pediococcus pentosaceus ATCC 25745 4417649 YP_804511.1 CDS PEPE_1013 NC_008525.1 1019325 1019696 R hypothetical protein complement(1019325..1019696) Pediococcus pentosaceus ATCC 25745 4417650 YP_804512.1 CDS PEPE_1014 NC_008525.1 1019711 1019851 R hypothetical protein complement(1019711..1019851) Pediococcus pentosaceus ATCC 25745 4417686 YP_804513.1 CDS PEPE_1015 NC_008525.1 1019861 1020079 R hypothetical protein complement(1019861..1020079) Pediococcus pentosaceus ATCC 25745 4417687 YP_804514.1 CDS PEPE_1016 NC_008525.1 1020076 1020486 R Holliday junction resolvase complement(1020076..1020486) Pediococcus pentosaceus ATCC 25745 4417688 YP_804515.1 CDS PEPE_1017 NC_008525.1 1020487 1020603 R hypothetical protein complement(1020487..1020603) Pediococcus pentosaceus ATCC 25745 4417689 YP_804516.1 CDS PEPE_1018 NC_008525.1 1020603 1021421 R DNA replication protein complement(1020603..1021421) Pediococcus pentosaceus ATCC 25745 4417690 YP_804517.1 CDS PEPE_1019 NC_008525.1 1021402 1022145 R hypothetical protein complement(1021402..1022145) Pediococcus pentosaceus ATCC 25745 4417691 YP_804518.1 CDS PEPE_1020 NC_008525.1 1022146 1022823 R hypothetical protein complement(1022146..1022823) Pediococcus pentosaceus ATCC 25745 4417692 YP_804519.1 CDS PEPE_1021 NC_008525.1 1022834 1023232 R single-stranded DNA-binding protein complement(1022834..1023232) Pediococcus pentosaceus ATCC 25745 4417693 YP_804520.1 CDS PEPE_1022 NC_008525.1 1023235 1023891 R hypothetical protein complement(1023235..1023891) Pediococcus pentosaceus ATCC 25745 4417694 YP_804521.1 CDS PEPE_1023 NC_008525.1 1023888 1024349 R hypothetical protein complement(1023888..1024349) Pediococcus pentosaceus ATCC 25745 4417695 YP_804522.1 CDS PEPE_1024 NC_008525.1 1024342 1024443 R hypothetical protein complement(1024342..1024443) Pediococcus pentosaceus ATCC 25745 4417696 YP_804523.1 CDS PEPE_1025 NC_008525.1 1024575 1024841 D hypothetical protein 1024575..1024841 Pediococcus pentosaceus ATCC 25745 4417697 YP_804524.1 CDS PEPE_1026 NC_008525.1 1024798 1025055 R hypothetical protein complement(1024798..1025055) Pediococcus pentosaceus ATCC 25745 4417698 YP_804525.1 CDS PEPE_1027 NC_008525.1 1025055 1025153 R hypothetical protein complement(1025055..1025153) Pediococcus pentosaceus ATCC 25745 4417699 YP_804526.1 CDS PEPE_1028 NC_008525.1 1025153 1025362 R hypothetical protein complement(1025153..1025362) Pediococcus pentosaceus ATCC 25745 4417700 YP_804527.1 CDS PEPE_1029 NC_008525.1 1025365 1025451 R hypothetical protein complement(1025365..1025451) Pediococcus pentosaceus ATCC 25745 4417701 YP_804528.1 CDS PEPE_1030 NC_008525.1 1025707 1025910 D hypothetical protein 1025707..1025910 Pediococcus pentosaceus ATCC 25745 4417702 YP_804529.1 CDS PEPE_1031 NC_008525.1 1025935 1026135 R hypothetical protein complement(1025935..1026135) Pediococcus pentosaceus ATCC 25745 4417703 YP_804530.1 CDS PEPE_1032 NC_008525.1 1026181 1026984 R phage-encoded protein complement(1026181..1026984) Pediococcus pentosaceus ATCC 25745 4417669 YP_804531.1 CDS PEPE_1033 NC_008525.1 1027000 1027188 R hypothetical protein complement(1027000..1027188) Pediococcus pentosaceus ATCC 25745 4417670 YP_804532.1 CDS PEPE_1034 NC_008525.1 1027454 1027801 D XRE family transcriptional regulator 1027454..1027801 Pediococcus pentosaceus ATCC 25745 4417671 YP_804533.1 CDS PEPE_1035 NC_008525.1 1027907 1028215 D hypothetical protein 1027907..1028215 Pediococcus pentosaceus ATCC 25745 4417672 YP_804534.1 CDS PEPE_1036 NC_008525.1 1028279 1029406 D hypothetical protein 1028279..1029406 Pediococcus pentosaceus ATCC 25745 4417673 YP_804535.1 CDS PEPE_1037 NC_008525.1 1029553 1029750 D hypothetical protein 1029553..1029750 Pediococcus pentosaceus ATCC 25745 4417674 YP_804536.1 CDS PEPE_1038 NC_008525.1 1029975 1031048 D integrase 1029975..1031048 Pediococcus pentosaceus ATCC 25745 4417675 YP_804537.1 CDS PEPE_1039 NC_008525.1 1031069 1031611 R transcription regulator complement(1031069..1031611) Pediococcus pentosaceus ATCC 25745 4417676 YP_804538.1 CDS PEPE_1040 NC_008525.1 1031855 1032217 D hypothetical protein 1031855..1032217 Pediococcus pentosaceus ATCC 25745 4417677 YP_804539.1 CDS PEPE_1041 NC_008525.1 1032326 1033168 R transcriptional regulator complement(1032326..1033168) Pediococcus pentosaceus ATCC 25745 4417678 YP_804540.1 CDS PEPE_1042 NC_008525.1 1033293 1035272 R sucrose-specific PTS system IIBC component complement(1033293..1035272) Pediococcus pentosaceus ATCC 25745 4417679 YP_804541.1 CDS murQ NC_008525.1 1035290 1036180 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase complement(1035290..1036180) Pediococcus pentosaceus ATCC 25745 4417680 YP_804542.1 CDS PEPE_1044 NC_008525.1 1036457 1038217 D acyl esterase 1036457..1038217 Pediococcus pentosaceus ATCC 25745 4417681 YP_804543.1 CDS PEPE_1045 NC_008525.1 1038292 1039197 D LysR family transcriptional regulator 1038292..1039197 Pediococcus pentosaceus ATCC 25745 4417682 YP_804544.1 CDS PEPE_1046 NC_008525.1 1039633 1040085 R transcriptional regulator complement(1039633..1040085) Pediococcus pentosaceus ATCC 25745 4417683 YP_804545.1 CDS PEPE_1047 NC_008525.1 1040179 1040778 D putative NADPH-quinone reductase (modulator of drug activity B) 1040179..1040778 Pediococcus pentosaceus ATCC 25745 4417684 YP_804546.1 CDS PEPE_1048 NC_008525.1 1041191 1043344 R hypothetical protein complement(1041191..1043344) Pediococcus pentosaceus ATCC 25745 4417685 YP_804547.1 CDS PEPE_1049 NC_008525.1 1043443 1044681 R hypothetical protein complement(1043443..1044681) Pediococcus pentosaceus ATCC 25745 4417704 YP_804548.1 CDS PEPE_1050 NC_008525.1 1045033 1045878 R transcriptional regulator complement(1045033..1045878) Pediococcus pentosaceus ATCC 25745 4417705 YP_804549.1 CDS PEPE_1051 NC_008525.1 1046069 1046494 R nucleoside diphosphate kinase complement(1046069..1046494) Pediococcus pentosaceus ATCC 25745 4417706 YP_804550.1 CDS PEPE_1052 NC_008525.1 1046612 1047106 D acetyltransferase 1046612..1047106 Pediococcus pentosaceus ATCC 25745 4417707 YP_804551.1 CDS PEPE_1053 NC_008525.1 1047295 1048800 D amino acid transporter 1047295..1048800 Pediococcus pentosaceus ATCC 25745 4417708 YP_804552.1 CDS PEPE_1054 NC_008525.1 1048787 1048864 D hypothetical protein 1048787..1048864 Pediococcus pentosaceus ATCC 25745 4417709 YP_804553.1 CDS PEPE_1055 NC_008525.1 1049204 1050586 R D-xylose proton-symporter complement(1049204..1050586) Pediococcus pentosaceus ATCC 25745 4417710 YP_804554.1 CDS PEPE_1056 NC_008525.1 1050666 1051118 R ADP-ribose pyrophosphatase complement(1050666..1051118) Pediococcus pentosaceus ATCC 25745 4417711 YP_804555.1 CDS PEPE_1057 NC_008525.1 1051556 1052452 R AraC family transcriptional regulator complement(1051556..1052452) Pediococcus pentosaceus ATCC 25745 4417712 YP_804556.1 CDS PEPE_1058 NC_008525.1 1052624 1055926 D TPR repeat-containing protein 1052624..1055926 Pediococcus pentosaceus ATCC 25745 4417713 YP_804557.1 CDS PEPE_1059 NC_008525.1 1055975 1057000 D aldose 1-epimerase 1055975..1057000 Pediococcus pentosaceus ATCC 25745 4417714 YP_804558.1 CDS PEPE_1060 NC_008525.1 1057104 1057457 R arsenate reductase complement(1057104..1057457) Pediococcus pentosaceus ATCC 25745 4417715 YP_804559.1 CDS PEPE_1061 NC_008525.1 1057605 1058942 R Na+/H+ antiporter complement(1057605..1058942) Pediococcus pentosaceus ATCC 25745 4417716 YP_804560.1 CDS PEPE_1062 NC_008525.1 1059135 1060553 R periplasmic protease complement(1059135..1060553) Pediococcus pentosaceus ATCC 25745 4417717 YP_804561.1 CDS PEPE_1063 NC_008525.1 1060553 1060777 R hypothetical protein complement(1060553..1060777) Pediococcus pentosaceus ATCC 25745 4417718 YP_804562.1 CDS PEPE_1064 NC_008525.1 1060789 1061379 R hypothetical protein complement(1060789..1061379) Pediococcus pentosaceus ATCC 25745 4417719 YP_804563.1 CDS PEPE_1065 NC_008525.1 1061388 1062305 R lysophospholipase L1 related esterase complement(1061388..1062305) Pediococcus pentosaceus ATCC 25745 4417720 YP_804564.1 CDS PEPE_1066 NC_008525.1 1062370 1063215 R hypothetical protein complement(1062370..1063215) Pediococcus pentosaceus ATCC 25745 4417721 YP_804565.1 CDS PEPE_1067 NC_008525.1 1063452 1064189 R ABC-type polar amino acid transport system, ATPase component complement(1063452..1064189) Pediococcus pentosaceus ATCC 25745 4417071 YP_804566.1 CDS PEPE_1068 NC_008525.1 1064186 1065637 R ABC-type amino acid transport system, permease and periplasmic component complement(1064186..1065637) Pediococcus pentosaceus ATCC 25745 4417072 YP_804567.1 CDS PEPE_1069 NC_008525.1 1065759 1066244 R dihydrofolate reductase complement(1065759..1066244) Pediococcus pentosaceus ATCC 25745 4417073 YP_804568.1 CDS thyA NC_008525.1 1066273 1067223 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1066273..1067223) Pediococcus pentosaceus ATCC 25745 4417074 YP_804569.1 CDS PEPE_1071 NC_008525.1 1067236 1069113 R ABC transporter ATPase complement(1067236..1069113) Pediococcus pentosaceus ATCC 25745 4417075 YP_804570.1 CDS PEPE_1072 NC_008525.1 1069116 1070306 R tRNA nucleotidyltransferase/poly(A) polymerase complement(1069116..1070306) Pediococcus pentosaceus ATCC 25745 4417076 YP_804571.1 CDS PEPE_1073 NC_008525.1 1070578 1071462 D hypothetical protein 1070578..1071462 Pediococcus pentosaceus ATCC 25745 4417077 YP_804572.1 CDS PEPE_1074 NC_008525.1 1071517 1071987 R purine deoxyribosyltransferase complement(1071517..1071987) Pediococcus pentosaceus ATCC 25745 4417078 YP_804573.1 CDS PEPE_1075 NC_008525.1 1072173 1072475 R hypothetical protein complement(1072173..1072475) Pediococcus pentosaceus ATCC 25745 4417079 YP_804574.1 CDS PEPE_1076 NC_008525.1 1072498 1073766 R TPR repeat-containing protein complement(1072498..1073766) Pediococcus pentosaceus ATCC 25745 4417080 YP_804575.1 CDS PEPE_1077 NC_008525.1 1073833 1074108 R nucleoid protein Hbs complement(1073833..1074108) Pediococcus pentosaceus ATCC 25745 4417081 YP_804576.1 CDS rpsA NC_008525.1 1075727 1076935 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1075727..1076935) Pediococcus pentosaceus ATCC 25745 4417083 YP_804577.1 CDS PEPE_1080 NC_008525.1 1077011 1077691 R cytidylate kinase complement(1077011..1077691) Pediococcus pentosaceus ATCC 25745 4417084 YP_804578.1 CDS PEPE_1081 NC_008525.1 1077707 1078384 R LysM domain-containing protein complement(1077707..1078384) Pediococcus pentosaceus ATCC 25745 4417085 YP_804579.1 CDS PEPE_1082 NC_008525.1 1078457 1079881 R ATP-dependent DNA helicase RecQ complement(1078457..1079881) Pediococcus pentosaceus ATCC 25745 4417086 YP_804580.1 CDS PEPE_1083 NC_008525.1 1079868 1080896 R hypothetical protein complement(1079868..1080896) Pediococcus pentosaceus ATCC 25745 4417087 YP_804581.1 CDS PEPE_1084 NC_008525.1 1080893 1081618 R ribosomal large subunit pseudouridine synthase B complement(1080893..1081618) Pediococcus pentosaceus ATCC 25745 4417019 YP_804582.1 CDS PEPE_1085 NC_008525.1 1081619 1082209 R condensin subunit ScpB complement(1081619..1082209) Pediococcus pentosaceus ATCC 25745 4417020 YP_804583.1 CDS PEPE_1086 NC_008525.1 1082209 1082937 R condensin subunit ScpA complement(1082209..1082937) Pediococcus pentosaceus ATCC 25745 4417021 YP_804584.1 CDS PEPE_1087 NC_008525.1 1082927 1083286 R riboflavin biosynthesis acetyltransferase RibT complement(1082927..1083286) Pediococcus pentosaceus ATCC 25745 4417022 YP_804585.1 CDS PEPE_1088 NC_008525.1 1083302 1084189 R tyrosine recombinase XerD subunit complement(1083302..1084189) Pediococcus pentosaceus ATCC 25745 4417023 YP_804586.1 CDS PEPE_1089 NC_008525.1 1084192 1085058 R RNA-binding protein complement(1084192..1085058) Pediococcus pentosaceus ATCC 25745 4417024 YP_804587.1 CDS PEPE_1090 NC_008525.1 1085076 1085534 R hypothetical protein complement(1085076..1085534) Pediococcus pentosaceus ATCC 25745 4417025 YP_804588.1 CDS PEPE_1091 NC_008525.1 1085993 1086358 D hypothetical protein 1085993..1086358 Pediococcus pentosaceus ATCC 25745 4417026 YP_804589.1 CDS PEPE_1092 NC_008525.1 1086542 1088305 R pyruvate kinase complement(1086542..1088305) Pediococcus pentosaceus ATCC 25745 4417027 YP_804590.1 CDS PEPE_1093 NC_008525.1 1088378 1089346 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1088378..1089346) Pediococcus pentosaceus ATCC 25745 4417028 YP_804591.1 CDS PEPE_1094 NC_008525.1 1089469 1092792 R DNA polymerase III catalytic subunit, DnaE type complement(1089469..1092792) Pediococcus pentosaceus ATCC 25745 4417029 YP_804592.1 CDS PEPE_1095 NC_008525.1 1092919 1093092 D hypothetical protein 1092919..1093092 Pediococcus pentosaceus ATCC 25745 4417030 YP_804593.1 CDS PEPE_1096 NC_008525.1 1093137 1095728 R ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones complement(1093137..1095728) Pediococcus pentosaceus ATCC 25745 4417031 YP_804594.1 CDS PEPE_1097 NC_008525.1 1095748 1096539 R hypothetical protein complement(1095748..1096539) Pediococcus pentosaceus ATCC 25745 4417032 YP_804595.1 CDS PEPE_1098 NC_008525.1 1096529 1097227 R SAM-dependent methyltransferase complement(1096529..1097227) Pediococcus pentosaceus ATCC 25745 4417033 YP_804596.1 CDS PEPE_1099 NC_008525.1 1097323 1098462 R DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) complement(1097323..1098462) Pediococcus pentosaceus ATCC 25745 4417034 YP_804597.1 CDS PEPE_1100 NC_008525.1 1098480 1100342 R DNA primase complement(1098480..1100342) Pediococcus pentosaceus ATCC 25745 4417035 YP_804598.1 CDS PEPE_1101 NC_008525.1 1100594 1102666 R glycyl-tRNA synthetase subunit beta complement(1100594..1102666) Pediococcus pentosaceus ATCC 25745 4417036 YP_804599.1 CDS glyQ NC_008525.1 1102666 1103565 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1102666..1103565) Pediococcus pentosaceus ATCC 25745 4417037 YP_804600.1 CDS PEPE_1103 NC_008525.1 1103839 1104600 R DNA replication and repair protein RecO complement(1103839..1104600) Pediococcus pentosaceus ATCC 25745 4417038 YP_804601.1 CDS PEPE_1104 NC_008525.1 1104603 1105517 R GTPase complement(1104603..1105517) Pediococcus pentosaceus ATCC 25745 4417039 YP_804602.1 CDS PEPE_1105 NC_008525.1 1105540 1105929 R diacylglycerol kinase complement(1105540..1105929) Pediococcus pentosaceus ATCC 25745 4417040 YP_804603.1 CDS PEPE_1106 NC_008525.1 1105907 1106377 R metal-dependent hydrolase complement(1105907..1106377) Pediococcus pentosaceus ATCC 25745 4417041 YP_804604.1 CDS PEPE_1107 NC_008525.1 1106383 1107351 R phosphate starvation-inducible protein PhoH, ATPase complement(1106383..1107351) Pediococcus pentosaceus ATCC 25745 4417042 YP_804605.1 CDS PEPE_1108 NC_008525.1 1107363 1107806 R GatB/YqeY domain-containing protein complement(1107363..1107806) Pediococcus pentosaceus ATCC 25745 4417043 YP_804606.1 CDS rpsU NC_008525.1 1107868 1108053 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1107868..1108053) Pediococcus pentosaceus ATCC 25745 4417044 YP_804607.1 CDS PEPE_1110 NC_008525.1 1108252 1109061 D hypothetical protein 1108252..1109061 Pediococcus pentosaceus ATCC 25745 4417045 YP_804608.1 CDS PEPE_1111 NC_008525.1 1109126 1110016 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1109126..1110016) Pediococcus pentosaceus ATCC 25745 4417046 YP_804609.1 CDS PEPE_1112 NC_008525.1 1110013 1111224 R CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(1110013..1111224) Pediococcus pentosaceus ATCC 25745 4417047 YP_804610.1 CDS PEPE_1113 NC_008525.1 1111217 1112374 R CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(1111217..1112374) Pediococcus pentosaceus ATCC 25745 4417048 YP_804611.1 CDS PEPE_1114 NC_008525.1 1112385 1113263 R hypothetical protein complement(1112385..1113263) Pediococcus pentosaceus ATCC 25745 4417049 YP_804612.1 CDS aspS NC_008525.1 1113418 1115199 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1113418..1115199) Pediococcus pentosaceus ATCC 25745 4417050 YP_804613.1 CDS PEPE_1116 NC_008525.1 1115213 1116487 R histidyl-tRNA synthetase complement(1115213..1116487) Pediococcus pentosaceus ATCC 25745 4417051 YP_804614.1 CDS PEPE_1117 NC_008525.1 1116830 1117699 D N-acetylmuramoyl-L-alanine amidase 1116830..1117699 Pediococcus pentosaceus ATCC 25745 4417052 YP_804615.1 CDS PEPE_1118 NC_008525.1 1117669 1118307 R P-Ser-HPr phosphatase complement(1117669..1118307) Pediococcus pentosaceus ATCC 25745 4417053 YP_804616.1 CDS PEPE_1119 NC_008525.1 1118402 1118851 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1118402..1118851) Pediococcus pentosaceus ATCC 25745 4417088 YP_804617.1 CDS PEPE_1120 NC_008525.1 1118861 1121092 R guanosine polyphosphate pyrophosphohydrolase/synthetase complement(1118861..1121092) Pediococcus pentosaceus ATCC 25745 4417089 YP_804618.1 CDS PEPE_1121 NC_008525.1 1121200 1121529 R hypothetical protein complement(1121200..1121529) Pediococcus pentosaceus ATCC 25745 4417090 YP_804619.1 CDS PEPE_1122 NC_008525.1 1121544 1122281 R hypothetical protein complement(1121544..1122281) Pediococcus pentosaceus ATCC 25745 4417091 YP_804620.1 CDS prmA NC_008525.1 1122291 1123241 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(1122291..1123241) Pediococcus pentosaceus ATCC 25745 4417092 YP_804621.1 CDS PEPE_1124 NC_008525.1 1123315 1124607 R xanthine/uracil permease complement(1123315..1124607) Pediococcus pentosaceus ATCC 25745 4417093 YP_804622.1 CDS PEPE_1125 NC_008525.1 1124805 1125068 R hypothetical protein complement(1124805..1125068) Pediococcus pentosaceus ATCC 25745 4417094 YP_804623.1 CDS PEPE_1126 NC_008525.1 1125491 1126390 D DMT family permease 1125491..1126390 Pediococcus pentosaceus ATCC 25745 4417095 YP_804624.1 CDS PEPE_1127 NC_008525.1 1126431 1127168 R nitroreductase complement(1126431..1127168) Pediococcus pentosaceus ATCC 25745 4417096 YP_804625.1 CDS PEPE_1129 NC_008525.1 1127923 1128441 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(1127923..1128441) Pediococcus pentosaceus ATCC 25745 4417098 YP_804626.1 CDS PEPE_1130 NC_008525.1 1128443 1130764 R exonuclease RecJ complement(1128443..1130764) Pediococcus pentosaceus ATCC 25745 4417099 YP_804627.1 CDS PEPE_1131 NC_008525.1 1130778 1131563 R Short-chain dehydrogenase of various substrate specificities complement(1130778..1131563) Pediococcus pentosaceus ATCC 25745 4417100 YP_804628.1 CDS PEPE_1132 NC_008525.1 1131581 1132507 R beta-lactamase superfamily hydrolase complement(1131581..1132507) Pediococcus pentosaceus ATCC 25745 4417101 YP_804629.1 CDS PEPE_1133 NC_008525.1 1132632 1132922 D hypothetical protein 1132632..1132922 Pediococcus pentosaceus ATCC 25745 4417102 YP_804630.1 CDS PEPE_1134 NC_008525.1 1132997 1134289 R GTPase complement(1132997..1134289) Pediococcus pentosaceus ATCC 25745 4417103 YP_804631.1 CDS uvrC NC_008525.1 1134348 1136132 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1134348..1136132) Pediococcus pentosaceus ATCC 25745 4417104 YP_804632.1 CDS PEPE_1136 NC_008525.1 1136244 1136987 R ABC-type polar amino acid transport system, ATPase component complement(1136244..1136987) Pediococcus pentosaceus ATCC 25745 4417818 YP_804633.1 CDS PEPE_1137 NC_008525.1 1136980 1138446 R ABC-type amino acid transport system, permease and periplasmic component complement(1136980..1138446) Pediococcus pentosaceus ATCC 25745 4417819 YP_804634.1 CDS PEPE_1138 NC_008525.1 1138635 1138778 D hypothetical protein 1138635..1138778 Pediococcus pentosaceus ATCC 25745 4417820 YP_804635.1 CDS PEPE_1139 NC_008525.1 1138822 1139112 R pyrophosphatase complement(1138822..1139112) Pediococcus pentosaceus ATCC 25745 4417821 YP_804636.1 CDS engB NC_008525.1 1139114 1139701 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1139114..1139701) Pediococcus pentosaceus ATCC 25745 4417822 YP_804637.1 CDS clpX NC_008525.1 1139801 1141057 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1139801..1141057) Pediococcus pentosaceus ATCC 25745 4417823 YP_804638.1 CDS PEPE_1142 NC_008525.1 1141197 1142504 R FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) complement(1141197..1142504) Pediococcus pentosaceus ATCC 25745 4417824 YP_804639.1 CDS PEPE_1143 NC_008525.1 1142645 1143832 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1142645..1143832) Pediococcus pentosaceus ATCC 25745 4417825 YP_804640.1 CDS PEPE_1144 NC_008525.1 1144016 1144882 R BS_ysoA-like protein complement(1144016..1144882) Pediococcus pentosaceus ATCC 25745 4417826 YP_804641.1 CDS PEPE_1145 NC_008525.1 1144884 1146641 R metallo-beta-lactamase superfamily hydrolase complement(1144884..1146641) Pediococcus pentosaceus ATCC 25745 4417827 YP_804642.1 CDS rpsO NC_008525.1 1146721 1146990 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(1146721..1146990) Pediococcus pentosaceus ATCC 25745 4417828 YP_804643.1 CDS PEPE_1147 NC_008525.1 1147196 1147450 D SSU ribosomal protein S20P 1147196..1147450 Pediococcus pentosaceus ATCC 25745 4417829 YP_804644.1 CDS PEPE_1148 NC_008525.1 1147476 1148495 R DNA polymerase III, delta subunit complement(1147476..1148495) Pediococcus pentosaceus ATCC 25745 4417830 YP_804645.1 CDS PEPE_1149 NC_008525.1 1148492 1150597 R metallo-beta-lactamase superfamily hydrolase complement(1148492..1150597) Pediococcus pentosaceus ATCC 25745 4417831 YP_804646.1 CDS PEPE_1150 NC_008525.1 1150743 1151225 R deoxycytidylate deaminase complement(1150743..1151225) Pediococcus pentosaceus ATCC 25745 4417832 YP_804647.1 CDS PEPE_1151 NC_008525.1 1151244 1151951 R DNA uptake protein related DNA-binding protein complement(1151244..1151951) Pediococcus pentosaceus ATCC 25745 4417833 YP_804648.1 CDS PEPE_1152 NC_008525.1 1152021 1152497 R phosphopantetheine adenylyltransferase complement(1152021..1152497) Pediococcus pentosaceus ATCC 25745 4417834 YP_804649.1 CDS PEPE_1153 NC_008525.1 1152502 1153053 R N6-adenine-specific methylase complement(1152502..1153053) Pediococcus pentosaceus ATCC 25745 4417616 YP_804650.1 CDS PEPE_1154 NC_008525.1 1153050 1153310 R hypothetical protein complement(1153050..1153310) Pediococcus pentosaceus ATCC 25745 4417617 YP_804651.1 CDS PEPE_1155 NC_008525.1 1153312 1154520 R cell division membrane protein complement(1153312..1154520) Pediococcus pentosaceus ATCC 25745 4417618 YP_804652.1 CDS PEPE_1156 NC_008525.1 1154622 1156466 R stress response membrane GTPase complement(1154622..1156466) Pediococcus pentosaceus ATCC 25745 4417619 YP_804653.1 CDS PEPE_1157 NC_008525.1 1156541 1157326 R fructose-1 6-bisphosphatase complement(1156541..1157326) Pediococcus pentosaceus ATCC 25745 4417620 YP_804654.1 CDS PEPE_1158 NC_008525.1 1157310 1157609 R hypothetical protein complement(1157310..1157609) Pediococcus pentosaceus ATCC 25745 4417621 YP_804655.1 CDS def NC_008525.1 1157694 1158248 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1157694..1158248 Pediococcus pentosaceus ATCC 25745 4417622 YP_804656.1 CDS PEPE_1160 NC_008525.1 1158345 1158812 R hypothetical protein complement(1158345..1158812) Pediococcus pentosaceus ATCC 25745 4417623 YP_804657.1 CDS PEPE_1161 NC_008525.1 1158975 1159190 D RNA-binding protein 1158975..1159190 Pediococcus pentosaceus ATCC 25745 4417624 YP_804658.1 CDS PEPE_1162 NC_008525.1 1159195 1160871 D mRNA degradation ribonuclease J1/J2enzyme 1159195..1160871 Pediococcus pentosaceus ATCC 25745 4417625 YP_804659.1 CDS PEPE_1163 NC_008525.1 1161050 1162540 R cell wall hydrolase complement(1161050..1162540) Pediococcus pentosaceus ATCC 25745 4417626 YP_804660.1 CDS PEPE_1164 NC_008525.1 1162903 1164816 R fusion of IIA, IIB and IIC component of mannitol/fructose-specific phosphotransferase system mannitol/fructose-specific complement(1162903..1164816) Pediococcus pentosaceus ATCC 25745 4417627 YP_804661.1 CDS PEPE_1165 NC_008525.1 1164828 1165739 R tagatose-6-phosphate kinase complement(1164828..1165739) Pediococcus pentosaceus ATCC 25745 4417628 YP_804662.1 CDS PEPE_1166 NC_008525.1 1165736 1166485 R lactose transport regulator complement(1165736..1166485) Pediococcus pentosaceus ATCC 25745 4417629 YP_804663.1 CDS PEPE_1167 NC_008525.1 1166616 1167668 R permease complement(1166616..1167668) Pediococcus pentosaceus ATCC 25745 4417630 YP_804664.1 CDS PEPE_1168 NC_008525.1 1167759 1168736 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(1167759..1168736) Pediococcus pentosaceus ATCC 25745 4417631 YP_804665.1 CDS PEPE_1169 NC_008525.1 1168805 1171249 R ATP-dependent RecD/TraA family DNA helicase complement(1168805..1171249) Pediococcus pentosaceus ATCC 25745 4417632 YP_804666.1 CDS PEPE_1170 NC_008525.1 1171249 1171899 R TPR repeat-containing protein complement(1171249..1171899) Pediococcus pentosaceus ATCC 25745 4417633 YP_804667.1 CDS PEPE_1171 NC_008525.1 1171913 1172587 R fructose-2,6-bisphosphatase complement(1171913..1172587) Pediococcus pentosaceus ATCC 25745 4417570 YP_804668.1 CDS PEPE_1172 NC_008525.1 1172694 1173827 R tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase complement(1172694..1173827) Pediococcus pentosaceus ATCC 25745 4417571 YP_804669.1 CDS PEPE_1173 NC_008525.1 1173949 1174290 R hypothetical protein complement(1173949..1174290) Pediococcus pentosaceus ATCC 25745 4417572 YP_804670.1 CDS PEPE_1174 NC_008525.1 1174306 1175466 R cysteine sulfinate desulfinase/cysteine desulfurase complement(1174306..1175466) Pediococcus pentosaceus ATCC 25745 4417573 YP_804671.1 CDS PEPE_1175 NC_008525.1 1175466 1176167 R methylthioadenosine nucleosidase complement(1175466..1176167) Pediococcus pentosaceus ATCC 25745 4417574 YP_804672.1 CDS PEPE_1176 NC_008525.1 1176179 1176439 R small membrane protein complement(1176179..1176439) Pediococcus pentosaceus ATCC 25745 4417575 YP_804673.1 CDS PEPE_1177 NC_008525.1 1176448 1176987 R NUDIX family hydrolase complement(1176448..1176987) Pediococcus pentosaceus ATCC 25745 4417576 YP_804674.1 CDS PEPE_1178 NC_008525.1 1176990 1177199 R cold-shock DNA-binding protein family protein complement(1176990..1177199) Pediococcus pentosaceus ATCC 25745 4417577 YP_804675.1 CDS ileS NC_008525.1 1177305 1180106 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1177305..1180106) Pediococcus pentosaceus ATCC 25745 4417578 YP_804676.1 CDS PEPE_1180 NC_008525.1 1180363 1181094 R cell division initiation protein complement(1180363..1181094) Pediococcus pentosaceus ATCC 25745 4417579 YP_804677.1 CDS PEPE_1181 NC_008525.1 1181118 1181903 R cell division protein complement(1181118..1181903) Pediococcus pentosaceus ATCC 25745 4417580 YP_804678.1 CDS PEPE_1182 NC_008525.1 1181906 1182178 R cell division membrane protein complement(1181906..1182178) Pediococcus pentosaceus ATCC 25745 4417581 YP_804679.1 CDS PEPE_1183 NC_008525.1 1182260 1183579 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(1182260..1183579) Pediococcus pentosaceus ATCC 25745 4417582 YP_804680.1 CDS PEPE_1184 NC_008525.1 1183601 1184962 R cell division protein FtsA complement(1183601..1184962) Pediococcus pentosaceus ATCC 25745 4417583 YP_804681.1 CDS PEPE_1185 NC_008525.1 1185260 1186372 R cell division protein FtsQ complement(1185260..1186372) Pediococcus pentosaceus ATCC 25745 4417584 YP_804682.1 CDS PEPE_1186 NC_008525.1 1186387 1187475 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase complement(1186387..1187475) Pediococcus pentosaceus ATCC 25745 4417585 YP_804683.1 CDS PEPE_1187 NC_008525.1 1187480 1188847 R UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(1187480..1188847) Pediococcus pentosaceus ATCC 25745 4417586 YP_804684.1 CDS PEPE_1188 NC_008525.1 1188861 1189817 R phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1188861..1189817) Pediococcus pentosaceus ATCC 25745 4417921 YP_804685.1 CDS PEPE_1189 NC_008525.1 1189834 1191999 R cell division protein FtsI complement(1189834..1191999) Pediococcus pentosaceus ATCC 25745 4417922 YP_804686.1 CDS PEPE_1190 NC_008525.1 1191996 1192382 R cell division protein FtsL complement(1191996..1192382) Pediococcus pentosaceus ATCC 25745 4417923 YP_804687.1 CDS mraW NC_008525.1 1192398 1193342 R S-adenosyl-methyltransferase MraW complement(1192398..1193342) Pediococcus pentosaceus ATCC 25745 4417924 YP_804688.1 CDS PEPE_1192 NC_008525.1 1193348 1193779 R hypothetical protein complement(1193348..1193779) Pediococcus pentosaceus ATCC 25745 4417925 YP_804689.1 CDS PEPE_1193 NC_008525.1 1194022 1194150 D hypothetical protein 1194022..1194150 Pediococcus pentosaceus ATCC 25745 4417926 YP_804690.1 CDS PEPE_1194 NC_008525.1 1194198 1196549 R DNA segregation ATPase FtsK/SpoIIIE related protein complement(1194198..1196549) Pediococcus pentosaceus ATCC 25745 4417927 YP_804691.1 CDS PEPE_1195 NC_008525.1 1196558 1197076 R rRNA methylase (SpoU class) complement(1196558..1197076) Pediococcus pentosaceus ATCC 25745 4417928 YP_804692.1 CDS PEPE_1196 NC_008525.1 1197254 1198396 R permease complement(1197254..1198396) Pediococcus pentosaceus ATCC 25745 4417929 YP_804693.1 CDS PEPE_1197 NC_008525.1 1198410 1198766 R glucitol/sorbitol PTS, EIIA complement(1198410..1198766) Pediococcus pentosaceus ATCC 25745 4417930 YP_804694.1 CDS PEPE_1198 NC_008525.1 1198904 1199914 D 3-carboxymuconate cyclase 1198904..1199914 Pediococcus pentosaceus ATCC 25745 4417931 YP_804695.1 CDS PEPE_1199 NC_008525.1 1199932 1200561 D copper resistance protein 1199932..1200561 Pediococcus pentosaceus ATCC 25745 4417932 YP_804696.1 CDS PEPE_1200 NC_008525.1 1200609 1201958 R transcriptional regulator complement(1200609..1201958) Pediococcus pentosaceus ATCC 25745 4417933 YP_804697.1 CDS PEPE_1201 NC_008525.1 1201951 1202712 R pseudouridylate synthase, 23S RNA-specific complement(1201951..1202712) Pediococcus pentosaceus ATCC 25745 4417934 YP_804698.1 CDS ppnK NC_008525.1 1202852 1203661 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(1202852..1203661) Pediococcus pentosaceus ATCC 25745 4417935 YP_804699.1 CDS PEPE_1203 NC_008525.1 1203664 1204278 R RelA_SpoT domain-containing protein complement(1203664..1204278) Pediococcus pentosaceus ATCC 25745 4417936 YP_804700.1 CDS PEPE_1204 NC_008525.1 1204446 1205042 D dithiol-disulfide isomerase 1204446..1205042 Pediococcus pentosaceus ATCC 25745 4417937 YP_804701.1 CDS PEPE_1205 NC_008525.1 1205064 1206089 R competence protein complement(1205064..1206089) Pediococcus pentosaceus ATCC 25745 4417938 YP_804702.1 CDS PEPE_1206 NC_008525.1 1206186 1206911 R enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein complement(1206186..1206911) Pediococcus pentosaceus ATCC 25745 4417587 YP_804703.1 CDS PEPE_1207 NC_008525.1 1207089 1207487 R arsenate reductase complement(1207089..1207487) Pediococcus pentosaceus ATCC 25745 4417588 YP_804704.1 CDS PEPE_1208 NC_008525.1 1207744 1208481 R beta-lactamase superfamily hydrolase complement(1207744..1208481) Pediococcus pentosaceus ATCC 25745 4417589 YP_804705.1 CDS PEPE_1209 NC_008525.1 1208591 1209076 D monooxygenase 1208591..1209076 Pediococcus pentosaceus ATCC 25745 4417590 YP_804706.1 CDS PEPE_1210 NC_008525.1 1209132 1209350 D hypothetical protein 1209132..1209350 Pediococcus pentosaceus ATCC 25745 4417591 YP_804707.1 CDS PEPE_1224 NC_008525.1 1215828 1216202 R RNA-binding protein complement(1215828..1216202) Pediococcus pentosaceus ATCC 25745 4417798 YP_804708.1 CDS PEPE_1225 NC_008525.1 1216315 1216959 D hypothetical protein 1216315..1216959 Pediococcus pentosaceus ATCC 25745 4417799 YP_804709.1 CDS PEPE_1226 NC_008525.1 1216956 1217582 R hypothetical protein complement(1216956..1217582) Pediococcus pentosaceus ATCC 25745 4417800 YP_804710.1 CDS PEPE_1227 NC_008525.1 1217573 1218349 R HAD family sugar phosphatase complement(1217573..1218349) Pediococcus pentosaceus ATCC 25745 4417853 YP_804711.1 CDS PEPE_1228 NC_008525.1 1218350 1218886 R hypothetical protein complement(1218350..1218886) Pediococcus pentosaceus ATCC 25745 4417854 YP_804712.1 CDS PEPE_1229 NC_008525.1 1218949 1219557 R phosphoesterase or phosphohydrolase complement(1218949..1219557) Pediococcus pentosaceus ATCC 25745 4417855 YP_804713.1 CDS PEPE_1230 NC_008525.1 1219554 1220918 R gamma-aminobutyrate permease related permease complement(1219554..1220918) Pediococcus pentosaceus ATCC 25745 4417856 YP_804714.1 CDS PEPE_1231 NC_008525.1 1221010 1222014 R adenine-specific DNA methylase complement(1221010..1222014) Pediococcus pentosaceus ATCC 25745 4417857 YP_804715.1 CDS PEPE_1232 NC_008525.1 1222032 1222346 R hypothetical protein complement(1222032..1222346) Pediococcus pentosaceus ATCC 25745 4417858 YP_804716.1 CDS PEPE_1233 NC_008525.1 1222315 1222749 R hypothetical protein complement(1222315..1222749) Pediococcus pentosaceus ATCC 25745 4417859 YP_804717.1 CDS PEPE_1234 NC_008525.1 1222727 1222912 R hypothetical protein complement(1222727..1222912) Pediococcus pentosaceus ATCC 25745 4417860 YP_804718.1 CDS PEPE_1235 NC_008525.1 1222893 1223252 R hypothetical protein complement(1222893..1223252) Pediococcus pentosaceus ATCC 25745 4417861 YP_804719.1 CDS PEPE_1236 NC_008525.1 1223332 1223637 R competence protein ComGC complement(1223332..1223637) Pediococcus pentosaceus ATCC 25745 4417862 YP_804720.1 CDS PEPE_1237 NC_008525.1 1223634 1224644 R Type II secretory pathway/competence component complement(1223634..1224644) Pediococcus pentosaceus ATCC 25745 4417863 YP_804721.1 CDS PEPE_1238 NC_008525.1 1224622 1225584 R Type II secretory pathway/competence component, ATPase complement(1224622..1225584) Pediococcus pentosaceus ATCC 25745 4417864 YP_804722.1 CDS PEPE_1239 NC_008525.1 1225703 1226614 R ribokinase family sugar kinase complement(1225703..1226614) Pediococcus pentosaceus ATCC 25745 4417865 YP_804723.1 CDS PEPE_1240 NC_008525.1 1226725 1227462 R hypothetical protein complement(1226725..1227462) Pediococcus pentosaceus ATCC 25745 4417866 YP_804724.1 CDS PEPE_1241 NC_008525.1 1227565 1227963 R hypothetical protein complement(1227565..1227963) Pediococcus pentosaceus ATCC 25745 4417867 YP_804725.1 CDS PEPE_1242 NC_008525.1 1227956 1228285 R hypothetical protein complement(1227956..1228285) Pediococcus pentosaceus ATCC 25745 4417868 YP_804726.1 CDS PEPE_1243 NC_008525.1 1228278 1229567 R nucleotidyltransferase/DNA polymerase for DNA repair complement(1228278..1229567) Pediococcus pentosaceus ATCC 25745 4417869 YP_804727.1 CDS PEPE_1244 NC_008525.1 1230042 1230599 R translation initiation factor 5A (eIF-5A) complement(1230042..1230599) Pediococcus pentosaceus ATCC 25745 4417870 YP_804728.1 CDS PEPE_1245 NC_008525.1 1230837 1231394 R amidase complement(1230837..1231394) Pediococcus pentosaceus ATCC 25745 4417105 YP_804729.1 CDS PEPE_1246 NC_008525.1 1231423 1232721 R adenylosuccinate lyase complement(1231423..1232721) Pediococcus pentosaceus ATCC 25745 4417106 YP_804730.1 CDS PEPE_1247 NC_008525.1 1232902 1234197 D adenylosuccinate synthetase 1232902..1234197 Pediococcus pentosaceus ATCC 25745 4417107 YP_804731.1 CDS PEPE_1248 NC_008525.1 1234221 1234964 R hypothetical protein complement(1234221..1234964) Pediococcus pentosaceus ATCC 25745 4417108 YP_804732.1 CDS PEPE_1249 NC_008525.1 1235293 1236024 D glycerol uptake facilitator related permease 1235293..1236024 Pediococcus pentosaceus ATCC 25745 4417109 YP_804733.1 CDS PEPE_1250 NC_008525.1 1236080 1237084 R LacI family transcription regulator complement(1236080..1237084) Pediococcus pentosaceus ATCC 25745 4417110 YP_804734.1 CDS PEPE_1251 NC_008525.1 1237247 1238341 D Mername-AA019 peptidase 1237247..1238341 Pediococcus pentosaceus ATCC 25745 4417111 YP_804735.1 CDS PEPE_1252 NC_008525.1 1238398 1240146 R pyruvate oxidase complement(1238398..1240146) Pediococcus pentosaceus ATCC 25745 4417112 YP_804736.1 CDS PEPE_1253 NC_008525.1 1240314 1240664 R hypothetical protein complement(1240314..1240664) Pediococcus pentosaceus ATCC 25745 4417113 YP_804737.1 CDS PEPE_1254 NC_008525.1 1240677 1241090 R methyl-accepting chemotaxis-like protein complement(1240677..1241090) Pediococcus pentosaceus ATCC 25745 4417114 YP_804738.1 CDS PEPE_1255 NC_008525.1 1241220 1242065 D small-conductance mechanosensitive channel 1241220..1242065 Pediococcus pentosaceus ATCC 25745 4417115 YP_804739.1 CDS PEPE_1256 NC_008525.1 1242152 1242748 R xanthosine triphosphate pyrophosphatase complement(1242152..1242748) Pediococcus pentosaceus ATCC 25745 4417116 YP_804740.1 CDS PEPE_1257 NC_008525.1 1242760 1243557 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1242760..1243557) Pediococcus pentosaceus ATCC 25745 4417117 YP_804741.1 CDS PEPE_1258 NC_008525.1 1243699 1244010 R Thiol-disulfide isomerase and thioredoxin complement(1243699..1244010) Pediococcus pentosaceus ATCC 25745 4417118 YP_804742.1 CDS PEPE_1259 NC_008525.1 1244098 1246455 R MutS family ATPase complement(1244098..1246455) Pediococcus pentosaceus ATCC 25745 4417119 YP_804743.1 CDS PEPE_1260 NC_008525.1 1246542 1246829 R hypothetical protein complement(1246542..1246829) Pediococcus pentosaceus ATCC 25745 4417120 YP_804744.1 CDS PEPE_1261 NC_008525.1 1246840 1247280 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1246840..1247280) Pediococcus pentosaceus ATCC 25745 4417121 YP_804745.1 CDS PEPE_1262 NC_008525.1 1247280 1247561 R hypothetical protein complement(1247280..1247561) Pediococcus pentosaceus ATCC 25745 4417598 YP_804746.1 CDS alaS NC_008525.1 1247654 1250299 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1247654..1250299) Pediococcus pentosaceus ATCC 25745 4417599 YP_804747.1 CDS PEPE_1264 NC_008525.1 1250574 1251935 R superfamily II DNA/RNA helicase complement(1250574..1251935) Pediococcus pentosaceus ATCC 25745 4417600 YP_804748.1 CDS PEPE_1265 NC_008525.1 1251950 1252885 R phosphoesterase, DHH family protein complement(1251950..1252885) Pediococcus pentosaceus ATCC 25745 4417601 YP_804749.1 CDS PEPE_1266 NC_008525.1 1252971 1254095 R nucleotidyltransferase/DNA polymerase for DNA repair complement(1252971..1254095) Pediococcus pentosaceus ATCC 25745 4417602 YP_804750.1 CDS PEPE_1267 NC_008525.1 1254098 1255585 R glucose-6-phosphate 1-dehydrogenase complement(1254098..1255585) Pediococcus pentosaceus ATCC 25745 4417603 YP_804751.1 CDS PEPE_1268 NC_008525.1 1255697 1256071 R protein translocase subunit yajC complement(1255697..1256071) Pediococcus pentosaceus ATCC 25745 4417604 YP_804752.1 CDS tgt NC_008525.1 1256137 1257279 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(1256137..1257279) Pediococcus pentosaceus ATCC 25745 4417605 YP_804753.1 CDS PEPE_1270 NC_008525.1 1257303 1258337 R S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase) complement(1257303..1258337) Pediococcus pentosaceus ATCC 25745 4417606 YP_804754.1 CDS ruvB NC_008525.1 1258348 1259361 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1258348..1259361) Pediococcus pentosaceus ATCC 25745 4417607 YP_804755.1 CDS PEPE_1272 NC_008525.1 1259371 1259958 R Holliday junction DNA helicase subunit RuvA complement(1259371..1259958) Pediococcus pentosaceus ATCC 25745 4417608 YP_804756.1 CDS mutL NC_008525.1 1260006 1261943 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(1260006..1261943) Pediococcus pentosaceus ATCC 25745 4417609 YP_804757.1 CDS PEPE_1274 NC_008525.1 1261955 1264576 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1261955..1264576) Pediococcus pentosaceus ATCC 25745 4417610 YP_804758.1 CDS PEPE_1275 NC_008525.1 1264690 1266249 R HD superfamily hydrolase complement(1264690..1266249) Pediococcus pentosaceus ATCC 25745 4417611 YP_804759.1 CDS PEPE_1276 NC_008525.1 1266418 1267476 R recombinase A complement(1266418..1267476) Pediococcus pentosaceus ATCC 25745 4417612 YP_804760.1 CDS PEPE_1277 NC_008525.1 1267566 1268807 R competence/damage-inducible protein cinA complement(1267566..1268807) Pediococcus pentosaceus ATCC 25745 4417613 YP_804761.1 CDS PEPE_1278 NC_008525.1 1268917 1269498 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1268917..1269498) Pediococcus pentosaceus ATCC 25745 4417614 YP_804762.1 CDS PEPE_1279 NC_008525.1 1269511 1270380 R Xre-like DNA-binding protein complement(1269511..1270380) Pediococcus pentosaceus ATCC 25745 4417615 YP_804763.1 CDS PEPE_1280 NC_008525.1 1270426 1271151 R 3-oxoacyl-ACP reductase complement(1270426..1271151) Pediococcus pentosaceus ATCC 25745 4417054 YP_804764.1 CDS PEPE_1281 NC_008525.1 1271148 1272440 R Zn-dependent peptidase complement(1271148..1272440) Pediococcus pentosaceus ATCC 25745 4417055 YP_804765.1 CDS PEPE_1282 NC_008525.1 1272446 1273699 R Zn-dependent peptidase complement(1272446..1273699) Pediococcus pentosaceus ATCC 25745 4417056 YP_804766.1 CDS PEPE_1283 NC_008525.1 1273767 1275194 R cardiolipin synthetase 2 complement(1273767..1275194) Pediococcus pentosaceus ATCC 25745 4417057 YP_804767.1 CDS PEPE_1284 NC_008525.1 1275275 1276096 R amino acid ABC transporter periplasmic protein complement(1275275..1276096) Pediococcus pentosaceus ATCC 25745 4417058 YP_804768.1 CDS PEPE_1285 NC_008525.1 1276097 1276732 R ABC-type polar amino acid transport system, ATPase component complement(1276097..1276732) Pediococcus pentosaceus ATCC 25745 4417059 YP_804769.1 CDS PEPE_1286 NC_008525.1 1276747 1277397 R ABC-type amino acid transport system, permease component complement(1276747..1277397) Pediococcus pentosaceus ATCC 25745 4417060 YP_804770.1 CDS PEPE_1287 NC_008525.1 1277854 1278399 R rod shape-determining protein MreD complement(1277854..1278399) Pediococcus pentosaceus ATCC 25745 4417061 YP_804771.1 CDS PEPE_1288 NC_008525.1 1278409 1279254 R rod shape-determining protein MreC complement(1278409..1279254) Pediococcus pentosaceus ATCC 25745 4417062 YP_804772.1 CDS PEPE_1289 NC_008525.1 1279353 1280012 R DNA repair protein complement(1279353..1280012) Pediococcus pentosaceus ATCC 25745 4417063 YP_804773.1 CDS PEPE_1290 NC_008525.1 1280055 1281329 R folylpolyglutamate synthase complement(1280055..1281329) Pediococcus pentosaceus ATCC 25745 4417064 YP_804774.1 CDS valS NC_008525.1 1281413 1284079 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1281413..1284079) Pediococcus pentosaceus ATCC 25745 4417065 YP_804775.1 CDS PEPE_1292 NC_008525.1 1284379 1284870 R thiol peroxidase (atypical 2-Cys peroxiredoxin) complement(1284379..1284870) Pediococcus pentosaceus ATCC 25745 4417066 YP_804776.1 CDS PEPE_1293 NC_008525.1 1284947 1286164 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1284947..1286164) Pediococcus pentosaceus ATCC 25745 4417067 YP_804777.1 CDS PEPE_1294 NC_008525.1 1286173 1287327 R cysteine sulfinate desulfinase/cysteine desulfurase complement(1286173..1287327) Pediococcus pentosaceus ATCC 25745 4417068 YP_804778.1 CDS PEPE_1295 NC_008525.1 1287467 1289176 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(1287467..1289176) Pediococcus pentosaceus ATCC 25745 4417069 YP_804779.1 CDS PEPE_1296 NC_008525.1 1289340 1289825 D GAF domain-containing protein 1289340..1289825 Pediococcus pentosaceus ATCC 25745 4417070 YP_804780.1 CDS rpsD NC_008525.1 1290008 1290616 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1290008..1290616 Pediococcus pentosaceus ATCC 25745 4417552 YP_804781.1 CDS PEPE_1298 NC_008525.1 1290680 1291957 D recombination factor protein RarA 1290680..1291957 Pediococcus pentosaceus ATCC 25745 4417553 YP_804782.1 CDS PEPE_1299 NC_008525.1 1292225 1292503 D hypothetical protein 1292225..1292503 Pediococcus pentosaceus ATCC 25745 4417554 YP_804783.1 CDS PEPE_1300 NC_008525.1 1292570 1293025 D universal stress protein UspA-like nucleotide-binding protein 1292570..1293025 Pediococcus pentosaceus ATCC 25745 4417555 YP_804784.1 CDS PEPE_1301 NC_008525.1 1293091 1293642 R DNA-3-methyladenine glycosylase I complement(1293091..1293642) Pediococcus pentosaceus ATCC 25745 4417556 YP_804785.1 CDS PEPE_1302 NC_008525.1 1293691 1294746 R D-alanine--D-alanine ligase complement(1293691..1294746) Pediococcus pentosaceus ATCC 25745 4417557 YP_804786.1 CDS PEPE_1303 NC_008525.1 1294867 1295841 R hypothetical protein complement(1294867..1295841) Pediococcus pentosaceus ATCC 25745 4417558 YP_804787.1 CDS PEPE_1304 NC_008525.1 1296010 1297431 D amino acid transporter 1296010..1297431 Pediococcus pentosaceus ATCC 25745 4417559 YP_804788.1 CDS PEPE_1305 NC_008525.1 1297479 1298234 R integral membrane protein complement(1297479..1298234) Pediococcus pentosaceus ATCC 25745 4417560 YP_804789.1 CDS PEPE_1306 NC_008525.1 1298242 1299030 R ABC transporter, permease protein complement(1298242..1299030) Pediococcus pentosaceus ATCC 25745 4417561 YP_804790.1 CDS PEPE_1307 NC_008525.1 1299023 1299889 R ABC-type multidrug transport system, ATPase component complement(1299023..1299889) Pediococcus pentosaceus ATCC 25745 4417562 YP_804791.1 CDS PEPE_1308 NC_008525.1 1299886 1300257 R GntR family transcriptional regulator complement(1299886..1300257) Pediococcus pentosaceus ATCC 25745 4417563 YP_804792.1 CDS PEPE_1309 NC_008525.1 1300424 1301239 R ABC-type metal ion transport system, periplasmic component/surface antigen complement(1300424..1301239) Pediococcus pentosaceus ATCC 25745 4417564 YP_804793.1 CDS PEPE_1310 NC_008525.1 1301257 1301940 R ABC-type metal ion transport system, permease component complement(1301257..1301940) Pediococcus pentosaceus ATCC 25745 4417565 YP_804794.1 CDS PEPE_1311 NC_008525.1 1301930 1302967 R ABC-type metal ion transport system, ATPase component complement(1301930..1302967) Pediococcus pentosaceus ATCC 25745 4417566 YP_804795.1 CDS PEPE_1312 NC_008525.1 1303353 1304567 R cell division membrane protein complement(1303353..1304567) Pediococcus pentosaceus ATCC 25745 4417567 YP_804796.1 CDS PEPE_1313 NC_008525.1 1304583 1304804 R hypothetical protein complement(1304583..1304804) Pediococcus pentosaceus ATCC 25745 4417568 YP_804797.1 CDS PEPE_1314 NC_008525.1 1304813 1305070 R hypothetical protein complement(1304813..1305070) Pediococcus pentosaceus ATCC 25745 4417569 YP_804798.1 CDS PEPE_1315 NC_008525.1 1305085 1305309 R hypothetical protein complement(1305085..1305309) Pediococcus pentosaceus ATCC 25745 4417002 YP_804799.1 CDS atpC NC_008525.1 1305427 1305846 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1305427..1305846) Pediococcus pentosaceus ATCC 25745 4417003 YP_804800.1 CDS PEPE_1317 NC_008525.1 1305858 1307267 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1305858..1307267) Pediococcus pentosaceus ATCC 25745 4417004 YP_804801.1 CDS PEPE_1318 NC_008525.1 1307292 1308212 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1307292..1308212) Pediococcus pentosaceus ATCC 25745 4417005 YP_804802.1 CDS PEPE_1319 NC_008525.1 1308250 1309767 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1308250..1309767) Pediococcus pentosaceus ATCC 25745 4417006 YP_804803.1 CDS PEPE_1320 NC_008525.1 1309797 1310339 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1309797..1310339) Pediococcus pentosaceus ATCC 25745 4417007 YP_804804.1 CDS PEPE_1321 NC_008525.1 1310336 1310857 R F0F1-type ATP synthase, subunit b complement(1310336..1310857) Pediococcus pentosaceus ATCC 25745 4417008 YP_804805.1 CDS PEPE_1322 NC_008525.1 1310902 1311114 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(1310902..1311114) Pediococcus pentosaceus ATCC 25745 4417009 YP_804806.1 CDS PEPE_1323 NC_008525.1 1311147 1311863 R F0F1-type ATP synthase, subunit a complement(1311147..1311863) Pediococcus pentosaceus ATCC 25745 4417010 YP_804807.1 CDS PEPE_1324 NC_008525.1 1312137 1314749 R peptide ABC transporter permease complement(1312137..1314749) Pediococcus pentosaceus ATCC 25745 4417011 YP_804808.1 CDS PEPE_1325 NC_008525.1 1314759 1315460 R peptide ABC transporter ATPase complement(1314759..1315460) Pediococcus pentosaceus ATCC 25745 4417012 YP_804809.1 CDS upp NC_008525.1 1315566 1316195 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(1315566..1316195) Pediococcus pentosaceus ATCC 25745 4417013 YP_804810.1 CDS PEPE_1327 NC_008525.1 1316265 1317497 R serine hydroxymethyltransferase complement(1316265..1317497) Pediococcus pentosaceus ATCC 25745 4417014 YP_804811.1 CDS PEPE_1328 NC_008525.1 1317511 1318533 R translation factor SUA5 complement(1317511..1318533) Pediococcus pentosaceus ATCC 25745 4417015 YP_804812.1 CDS PEPE_1329 NC_008525.1 1318543 1319394 R methylase of polypeptide chain release factor complement(1318543..1319394) Pediococcus pentosaceus ATCC 25745 4417016 YP_804813.1 CDS prfA NC_008525.1 1319387 1320466 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1319387..1320466) Pediococcus pentosaceus ATCC 25745 4417017 YP_804814.1 CDS PEPE_1331 NC_008525.1 1320471 1321064 R thymidine kinase complement(1320471..1321064) Pediococcus pentosaceus ATCC 25745 4417018 YP_804815.1 CDS PEPE_1332 NC_008525.1 1321218 1322564 D UDP-N-acetylmuramyl tripeptide synthase 1321218..1322564 Pediococcus pentosaceus ATCC 25745 4417905 YP_804816.1 CDS PEPE_1333 NC_008525.1 1322566 1323270 D glutamine amidotransferase 1322566..1323270 Pediococcus pentosaceus ATCC 25745 4417906 YP_804817.1 CDS PEPE_1334 NC_008525.1 1323318 1324286 R phosphomannose isomerase complement(1323318..1324286) Pediococcus pentosaceus ATCC 25745 4417907 YP_804818.1 CDS PEPE_1335 NC_008525.1 1324360 1325358 R Beta-lactamase class C related penicillin binding protein complement(1324360..1325358) Pediococcus pentosaceus ATCC 25745 4417908 YP_804819.1 CDS PEPE_1336 NC_008525.1 1325459 1327339 R ABC-type multidrug transport system, ATPase and permease component complement(1325459..1327339) Pediococcus pentosaceus ATCC 25745 4417909 YP_804820.1 CDS PEPE_1337 NC_008525.1 1327332 1329071 R ABC-type multidrug transport system, ATPase and permease component complement(1327332..1329071) Pediococcus pentosaceus ATCC 25745 4417910 YP_804821.1 CDS PEPE_1338 NC_008525.1 1329074 1329724 R transcriptional regulator complement(1329074..1329724) Pediococcus pentosaceus ATCC 25745 4417911 YP_804822.1 CDS PEPE_1339 NC_008525.1 1329847 1330188 D hypothetical protein 1329847..1330188 Pediococcus pentosaceus ATCC 25745 4417912 YP_804823.1 CDS greA NC_008525.1 1330203 1330667 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1330203..1330667 Pediococcus pentosaceus ATCC 25745 4417913 YP_804824.1 CDS PEPE_1343 NC_008525.1 1330897 1330977 R hypothetical protein complement(1330897..1330977) Pediococcus pentosaceus ATCC 25745 4417916 YP_804825.1 CDS PEPE_1344 NC_008525.1 1330956 1331252 R rhodanese-related sulfurtransferase complement(1330956..1331252) Pediococcus pentosaceus ATCC 25745 4417917 YP_804826.1 CDS PEPE_1345 NC_008525.1 1331400 1332221 R membrane protease family stomatin/prohibitin-like protein complement(1331400..1332221) Pediococcus pentosaceus ATCC 25745 4417918 YP_804827.1 CDS PEPE_1346 NC_008525.1 1332234 1332563 R hypothetical protein complement(1332234..1332563) Pediococcus pentosaceus ATCC 25745 4417919 YP_804828.1 CDS PEPE_1347 NC_008525.1 1332690 1333994 R flavoprotein complement(1332690..1333994) Pediococcus pentosaceus ATCC 25745 4417920 YP_804829.1 CDS PEPE_1348 NC_008525.1 1333991 1334623 R flavoprotein complement(1333991..1334623) Pediococcus pentosaceus ATCC 25745 4416963 YP_804830.1 CDS PEPE_1349 NC_008525.1 1334657 1335598 R thiamine biosynthesis membrane-associated lipoprotein complement(1334657..1335598) Pediococcus pentosaceus ATCC 25745 4416964 YP_804831.1 CDS pgi NC_008525.1 1335739 1337088 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1335739..1337088) Pediococcus pentosaceus ATCC 25745 4416965 YP_804832.1 CDS PEPE_1351 NC_008525.1 1337389 1338258 R putative glucose uptake permease complement(1337389..1338258) Pediococcus pentosaceus ATCC 25745 4416966 YP_804833.1 CDS PEPE_1352 NC_008525.1 1338606 1339469 D fructose-bisphosphate aldolase 1338606..1339469 Pediococcus pentosaceus ATCC 25745 4416967 YP_804834.1 CDS PEPE_1353 NC_008525.1 1339494 1340942 R Signal transduction histidine kinase complement(1339494..1340942) Pediococcus pentosaceus ATCC 25745 4416968 YP_804835.1 CDS PEPE_1354 NC_008525.1 1340948 1341670 R DNA-binding response regulator complement(1340948..1341670) Pediococcus pentosaceus ATCC 25745 4416969 YP_804836.1 CDS PEPE_1355 NC_008525.1 1341812 1342489 R aggregation promoting factor-like surface protein complement(1341812..1342489) Pediococcus pentosaceus ATCC 25745 4416970 YP_804837.1 CDS PEPE_1356 NC_008525.1 1342809 1343495 R hypothetical protein complement(1342809..1343495) Pediococcus pentosaceus ATCC 25745 4416971 YP_804838.1 CDS PEPE_1357 NC_008525.1 1343804 1344301 R sortase related acyltransferase complement(1343804..1344301) Pediococcus pentosaceus ATCC 25745 4416972 YP_804839.1 CDS PEPE_1358 NC_008525.1 1344470 1345618 D hypothetical protein 1344470..1345618 Pediococcus pentosaceus ATCC 25745 4416973 YP_804840.1 CDS PEPE_1359 NC_008525.1 1345666 1346043 R hypothetical protein complement(1345666..1346043) Pediococcus pentosaceus ATCC 25745 4416974 YP_804841.1 CDS PEPE_1360 NC_008525.1 1346109 1347461 R H+/gluconate symporter related permease complement(1346109..1347461) Pediococcus pentosaceus ATCC 25745 4416975 YP_804842.1 CDS PEPE_1361 NC_008525.1 1347533 1349095 R gluconate kinase complement(1347533..1349095) Pediococcus pentosaceus ATCC 25745 4416976 YP_804843.1 CDS PEPE_1362 NC_008525.1 1349110 1350009 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase-like protein complement(1349110..1350009) Pediococcus pentosaceus ATCC 25745 4416977 YP_804844.1 CDS PEPE_1363 NC_008525.1 1350158 1350991 D transcriptional regulator 1350158..1350991 Pediococcus pentosaceus ATCC 25745 4416978 YP_804845.1 CDS PEPE_1365 NC_008525.1 1352042 1352929 R restriction endonuclease complement(1352042..1352929) Pediococcus pentosaceus ATCC 25745 4416980 YP_804846.1 CDS PEPE_1366 NC_008525.1 1353073 1354440 R tRNA (uracil-5-)-methyltransferase related enzyme complement(1353073..1354440) Pediococcus pentosaceus ATCC 25745 4416981 YP_804847.1 CDS PEPE_1367 NC_008525.1 1354559 1355560 R similar to YegS from E. coli; putative lipid kinase complement(1354559..1355560) Pediococcus pentosaceus ATCC 25745 4416982 YP_804848.1 CDS gatB NC_008525.1 1355588 1357015 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(1355588..1357015) Pediococcus pentosaceus ATCC 25745 4416983 YP_804849.1 CDS PEPE_1369 NC_008525.1 1357015 1358475 R aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A complement(1357015..1358475) Pediococcus pentosaceus ATCC 25745 4416984 YP_804850.1 CDS PEPE_1370 NC_008525.1 1358475 1358789 R aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C complement(1358475..1358789) Pediococcus pentosaceus ATCC 25745 4416985 YP_804851.1 CDS PEPE_1371 NC_008525.1 1358809 1359966 R hypothetical protein complement(1358809..1359966) Pediococcus pentosaceus ATCC 25745 4416986 YP_804852.1 CDS PEPE_1372 NC_008525.1 1360035 1362308 R ATP-dependent DNA helicase PcrA complement(1360035..1362308) Pediococcus pentosaceus ATCC 25745 4416987 YP_804853.1 CDS PEPE_1373 NC_008525.1 1362401 1363540 R phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) complement(1362401..1363540) Pediococcus pentosaceus ATCC 25745 4416988 YP_804854.1 CDS PEPE_1374 NC_008525.1 1363579 1364151 R adenine/guanine phosphoribosyltransferase-like protein complement(1363579..1364151) Pediococcus pentosaceus ATCC 25745 4416989 YP_804855.1 CDS PEPE_1375 NC_008525.1 1364161 1364691 R N-acetylmuramidase complement(1364161..1364691) Pediococcus pentosaceus ATCC 25745 4416990 YP_804856.1 CDS PEPE_1376 NC_008525.1 1364899 1365522 R hypothetical protein complement(1364899..1365522) Pediococcus pentosaceus ATCC 25745 4416991 YP_804857.1 CDS PEPE_1377 NC_008525.1 1365596 1366543 D D-3-phosphoglycerate dehydrogenase 1365596..1366543 Pediococcus pentosaceus ATCC 25745 4416992 YP_804858.1 CDS PEPE_1378 NC_008525.1 1366612 1368468 R hypothetical protein complement(1366612..1368468) Pediococcus pentosaceus ATCC 25745 4416993 YP_804859.1 CDS PEPE_1379 NC_008525.1 1368746 1371598 D superfamily II DNA/RNA helicase 1368746..1371598 Pediococcus pentosaceus ATCC 25745 4416994 YP_804860.1 CDS PEPE_1380 NC_008525.1 1371653 1372225 D hypothetical protein 1371653..1372225 Pediococcus pentosaceus ATCC 25745 4416995 YP_804861.1 CDS PEPE_1381 NC_008525.1 1372363 1372800 D hypothetical protein 1372363..1372800 Pediococcus pentosaceus ATCC 25745 4416996 YP_804862.1 CDS PEPE_1382 NC_008525.1 1372872 1373354 R DNA-binding ferritin-like protein (oxidative damage protectant) complement(1372872..1373354) Pediococcus pentosaceus ATCC 25745 4416997 YP_804863.1 CDS PEPE_1383 NC_008525.1 1373624 1373890 R hypothetical protein complement(1373624..1373890) Pediococcus pentosaceus ATCC 25745 4417801 YP_804864.1 CDS PEPE_1384 NC_008525.1 1374048 1374254 D XRE family transcriptional regulator 1374048..1374254 Pediococcus pentosaceus ATCC 25745 4417802 YP_804865.1 CDS PEPE_1385 NC_008525.1 1374850 1375242 R 30S ribosomal protein S9 complement(1374850..1375242) Pediococcus pentosaceus ATCC 25745 4417803 YP_804866.1 CDS rplM NC_008525.1 1375257 1375700 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1375257..1375700) Pediococcus pentosaceus ATCC 25745 4417804 YP_804867.1 CDS PEPE_1387 NC_008525.1 1375826 1376572 R pseudouridylate synthase complement(1375826..1376572) Pediococcus pentosaceus ATCC 25745 4417805 YP_804868.1 CDS PEPE_1388 NC_008525.1 1376575 1377375 R ABC-type cobalt transport system, permease component CbiQ related transporter complement(1376575..1377375) Pediococcus pentosaceus ATCC 25745 4417806 YP_804869.1 CDS PEPE_1389 NC_008525.1 1377368 1378051 R ABC-type cobalt transport system, ATPase component complement(1377368..1378051) Pediococcus pentosaceus ATCC 25745 4417807 YP_804870.1 CDS PEPE_1390 NC_008525.1 1378213 1379055 R ABC-type cobalt transport system, ATPase component complement(1378213..1379055) Pediococcus pentosaceus ATCC 25745 4417808 YP_804871.1 CDS PEPE_1391 NC_008525.1 1379240 1379623 R 50S ribosomal protein L17 complement(1379240..1379623) Pediococcus pentosaceus ATCC 25745 4417809 YP_804872.1 CDS PEPE_1392 NC_008525.1 1379645 1380589 R DNA-directed RNA polymerase, alpha subunit/40 kD subunit complement(1379645..1380589) Pediococcus pentosaceus ATCC 25745 4417810 YP_804873.1 CDS PEPE_1393 NC_008525.1 1380673 1381062 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1380673..1381062) Pediococcus pentosaceus ATCC 25745 4417811 YP_804874.1 CDS rpsM NC_008525.1 1381083 1381448 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1381083..1381448) Pediococcus pentosaceus ATCC 25745 4417812 YP_804875.1 CDS PEPE_1395 NC_008525.1 1381473 1381592 R 50S ribosomal protein L36 complement(1381473..1381592) Pediococcus pentosaceus ATCC 25745 4417813 YP_804876.1 CDS infA NC_008525.1 1381620 1381838 R IF-1; stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1381620..1381838) Pediococcus pentosaceus ATCC 25745 4417814 YP_804877.1 CDS PEPE_1397 NC_008525.1 1381990 1382649 R adenylate kinase complement(1381990..1382649) Pediococcus pentosaceus ATCC 25745 4417815 YP_804878.1 CDS secY NC_008525.1 1382682 1383980 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1382682..1383980) Pediococcus pentosaceus ATCC 25745 4417816 YP_804879.1 CDS PEPE_1399 NC_008525.1 1383980 1384414 R 50S ribosomal protein L15 complement(1383980..1384414) Pediococcus pentosaceus ATCC 25745 4417817 YP_804880.1 CDS rpmD NC_008525.1 1384442 1384624 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1384442..1384624) Pediococcus pentosaceus ATCC 25745 4417722 YP_804881.1 CDS rpsE NC_008525.1 1384638 1385141 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1384638..1385141) Pediococcus pentosaceus ATCC 25745 4417723 YP_804882.1 CDS rplR NC_008525.1 1385163 1385519 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1385163..1385519) Pediococcus pentosaceus ATCC 25745 4417724 YP_804883.1 CDS rplF NC_008525.1 1385572 1386108 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1385572..1386108) Pediococcus pentosaceus ATCC 25745 4417725 YP_804884.1 CDS rpsH NC_008525.1 1386134 1386532 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1386134..1386532) Pediococcus pentosaceus ATCC 25745 4417726 YP_804885.1 CDS PEPE_1405 NC_008525.1 1386568 1386753 R SSU ribosomal protein S14P complement(1386568..1386753) Pediococcus pentosaceus ATCC 25745 4417727 YP_804886.1 CDS rplE NC_008525.1 1386772 1387314 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1386772..1387314) Pediococcus pentosaceus ATCC 25745 4417728 YP_804887.1 CDS rplX NC_008525.1 1387342 1387653 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1387342..1387653) Pediococcus pentosaceus ATCC 25745 4417729 YP_804888.1 CDS PEPE_1408 NC_008525.1 1387686 1388054 R 50S ribosomal protein L14 complement(1387686..1388054) Pediococcus pentosaceus ATCC 25745 4417730 YP_804889.1 CDS PEPE_1409 NC_008525.1 1388101 1388367 R 30S ribosomal protein S17 complement(1388101..1388367) Pediococcus pentosaceus ATCC 25745 4417731 YP_804890.1 CDS PEPE_1410 NC_008525.1 1388394 1388588 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1388394..1388588) Pediococcus pentosaceus ATCC 25745 4417732 YP_804891.1 CDS rplP NC_008525.1 1388578 1389012 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1388578..1389012) Pediococcus pentosaceus ATCC 25745 4417733 YP_804892.1 CDS PEPE_1412 NC_008525.1 1389015 1389686 R 30S ribosomal protein S3 complement(1389015..1389686) Pediococcus pentosaceus ATCC 25745 4417734 YP_804893.1 CDS rplV NC_008525.1 1389690 1390046 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1389690..1390046) Pediococcus pentosaceus ATCC 25745 4417735 YP_804894.1 CDS PEPE_1414 NC_008525.1 1390059 1390340 R SSU ribosomal protein S19P complement(1390059..1390340) Pediococcus pentosaceus ATCC 25745 4417736 YP_804895.1 CDS rplB NC_008525.1 1390367 1391215 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1390367..1391215) Pediococcus pentosaceus ATCC 25745 4417737 YP_804896.1 CDS PEPE_1416 NC_008525.1 1391238 1391525 R 50S ribosomal protein L23 complement(1391238..1391525) Pediococcus pentosaceus ATCC 25745 4417738 YP_804897.1 CDS PEPE_1417 NC_008525.1 1391525 1392148 R 50S ribosomal protein L4P complement(1391525..1392148) Pediococcus pentosaceus ATCC 25745 4417739 YP_804898.1 CDS PEPE_1418 NC_008525.1 1392167 1392799 R 50S ribosomal protein L3P complement(1392167..1392799) Pediococcus pentosaceus ATCC 25745 4417287 YP_804899.1 CDS rpsJ NC_008525.1 1392826 1393134 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1392826..1393134) Pediococcus pentosaceus ATCC 25745 4417288 YP_804900.1 CDS PEPE_1420 NC_008525.1 1393420 1395513 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1393420..1395513) Pediococcus pentosaceus ATCC 25745 4417289 YP_804901.1 CDS PEPE_1421 NC_008525.1 1395636 1396106 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1395636..1396106) Pediococcus pentosaceus ATCC 25745 4417290 YP_804902.1 CDS rpsL NC_008525.1 1396122 1396535 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1396122..1396535) Pediococcus pentosaceus ATCC 25745 4417291 YP_804903.1 CDS PEPE_1424 NC_008525.1 1397584 1398534 D inosine-uridine nucleoside N-ribohydrolase 1397584..1398534 Pediococcus pentosaceus ATCC 25745 4417293 YP_804904.1 CDS PEPE_1425 NC_008525.1 1398622 1402260 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1398622..1402260) Pediococcus pentosaceus ATCC 25745 4417294 YP_804905.1 CDS rpoB NC_008525.1 1402290 1405898 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1402290..1405898) Pediococcus pentosaceus ATCC 25745 4417295 YP_804906.1 CDS PEPE_1427 NC_008525.1 1406138 1408603 R ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones complement(1406138..1408603) Pediococcus pentosaceus ATCC 25745 4417296 YP_804907.1 CDS PEPE_1428 NC_008525.1 1408631 1409095 R transcriptional repressor of class III stress genes complement(1408631..1409095) Pediococcus pentosaceus ATCC 25745 4417297 YP_804908.1 CDS PEPE_1435 NC_008525.1 1409933 1410022 D hypothetical protein 1409933..1410022 Pediococcus pentosaceus ATCC 25745 4417304 YP_804909.1 CDS PEPE_1436 NC_008525.1 1410111 1411391 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1410111..1411391) Pediococcus pentosaceus ATCC 25745 4417305 YP_804910.1 CDS PEPE_1437 NC_008525.1 1411670 1412302 R deoxynucleoside kinase complement(1411670..1412302) Pediococcus pentosaceus ATCC 25745 4417306 YP_804911.1 CDS PEPE_1438 NC_008525.1 1412383 1413834 R amino acid transporter complement(1412383..1413834) Pediococcus pentosaceus ATCC 25745 4417307 YP_804912.1 CDS PEPE_1439 NC_008525.1 1414155 1414655 R acetyltransferase complement(1414155..1414655) Pediococcus pentosaceus ATCC 25745 4417308 YP_804913.1 CDS PEPE_1440 NC_008525.1 1414745 1415542 D esterase/lipase 1414745..1415542 Pediococcus pentosaceus ATCC 25745 4417309 YP_804914.1 CDS PEPE_1441 NC_008525.1 1415679 1416998 D transcriptional regulator 1415679..1416998 Pediococcus pentosaceus ATCC 25745 4417310 YP_804915.1 CDS PEPE_1442 NC_008525.1 1417059 1417931 R fructokinase / branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase complement(1417059..1417931) Pediococcus pentosaceus ATCC 25745 4417311 YP_804916.1 CDS PEPE_1443 NC_008525.1 1418106 1418597 R hypothetical protein complement(1418106..1418597) Pediococcus pentosaceus ATCC 25745 4417312 YP_804917.1 CDS PEPE_1444 NC_008525.1 1418613 1419359 R hypothetical protein complement(1418613..1419359) Pediococcus pentosaceus ATCC 25745 4417313 YP_804918.1 CDS PEPE_1445 NC_008525.1 1419492 1419692 R cold-shock DNA-binding protein family protein complement(1419492..1419692) Pediococcus pentosaceus ATCC 25745 4417314 YP_804919.1 CDS PEPE_1446 NC_008525.1 1420042 1420725 R membrane-associated phospholipid phosphatase complement(1420042..1420725) Pediococcus pentosaceus ATCC 25745 4417269 YP_804920.1 CDS PEPE_1447 NC_008525.1 1420750 1421397 R HD superfamily hydrolase complement(1420750..1421397) Pediococcus pentosaceus ATCC 25745 4417270 YP_804921.1 CDS PEPE_1448 NC_008525.1 1421394 1422956 R HD superfamily hydrolase complement(1421394..1422956) Pediococcus pentosaceus ATCC 25745 4417271 YP_804922.1 CDS PEPE_1449 NC_008525.1 1423095 1423508 R hypothetical protein complement(1423095..1423508) Pediococcus pentosaceus ATCC 25745 4417272 YP_804923.1 CDS PEPE_1450 NC_008525.1 1423539 1424423 R pseudouridylate synthase, 23S RNA-specific complement(1423539..1424423) Pediococcus pentosaceus ATCC 25745 4417273 YP_804924.1 CDS PEPE_1451 NC_008525.1 1424716 1425270 D hypothetical protein 1424716..1425270 Pediococcus pentosaceus ATCC 25745 4417274 YP_804925.1 CDS PEPE_1452 NC_008525.1 1425343 1425489 D hypothetical protein 1425343..1425489 Pediococcus pentosaceus ATCC 25745 4417275 YP_804926.1 CDS PEPE_1453 NC_008525.1 1425538 1426326 R hypothetical protein complement(1425538..1426326) Pediococcus pentosaceus ATCC 25745 4417276 YP_804927.1 CDS PEPE_1454 NC_008525.1 1426431 1427741 R xanthine/uracil permease complement(1426431..1427741) Pediococcus pentosaceus ATCC 25745 4417277 YP_804928.1 CDS PEPE_1455 NC_008525.1 1427922 1429328 D dipeptidase A 1427922..1429328 Pediococcus pentosaceus ATCC 25745 4417278 YP_804929.1 CDS PEPE_1456 NC_008525.1 1429428 1429781 R hypothetical protein complement(1429428..1429781) Pediococcus pentosaceus ATCC 25745 4417279 YP_804930.1 CDS PEPE_1457 NC_008525.1 1430335 1431594 R phosphoribosylamine--glycine ligase complement(1430335..1431594) Pediococcus pentosaceus ATCC 25745 4417280 YP_804931.1 CDS purH NC_008525.1 1431608 1433143 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1431608..1433143) Pediococcus pentosaceus ATCC 25745 4417281 YP_804932.1 CDS PEPE_1459 NC_008525.1 1433158 1433739 R phosphoribosylglycinamide formyltransferase complement(1433158..1433739) Pediococcus pentosaceus ATCC 25745 4417282 YP_804933.1 CDS PEPE_1460 NC_008525.1 1433736 1434785 R phosphoribosylformylglycinamidine cyclo-ligase complement(1433736..1434785) Pediococcus pentosaceus ATCC 25745 4417283 YP_804934.1 CDS PEPE_1461 NC_008525.1 1434785 1436254 R amidophosphoribosyltransferase complement(1434785..1436254) Pediococcus pentosaceus ATCC 25745 4417284 YP_804935.1 CDS PEPE_1462 NC_008525.1 1436239 1438443 R phosphoribosylformylglycinamidine synthase domain-containing protein complement(1436239..1438443) Pediococcus pentosaceus ATCC 25745 4417285 YP_804936.1 CDS PEPE_1463 NC_008525.1 1438464 1439138 R phosphoribosylformylglycinamidine synthase domain-containing protein complement(1438464..1439138) Pediococcus pentosaceus ATCC 25745 4417286 YP_804937.1 CDS PEPE_1464 NC_008525.1 1439141 1439395 R phosphoribosylformylglycinamidine (FGAM) synthase, PurS component complement(1439141..1439395) Pediococcus pentosaceus ATCC 25745 4417315 YP_804938.1 CDS PEPE_1465 NC_008525.1 1439388 1440116 R phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1439388..1440116) Pediococcus pentosaceus ATCC 25745 4417316 YP_804939.1 CDS PEPE_1466 NC_008525.1 1440116 1441255 R With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit complement(1440116..1441255) Pediococcus pentosaceus ATCC 25745 4417317 YP_804940.1 CDS PEPE_1467 NC_008525.1 1441239 1441721 R phosphoribosylcarboxyaminoimidazole (NCAIR) mutase complement(1441239..1441721) Pediococcus pentosaceus ATCC 25745 4417318 YP_804941.1 CDS PEPE_1468 NC_008525.1 1441940 1442437 R amidase complement(1441940..1442437) Pediococcus pentosaceus ATCC 25745 4417319 YP_804942.1 CDS PEPE_1469 NC_008525.1 1442859 1443866 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1442859..1443866 Pediococcus pentosaceus ATCC 25745 4417320 YP_804943.1 CDS PEPE_1470 NC_008525.1 1443943 1444569 R modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex complement(1443943..1444569) Pediococcus pentosaceus ATCC 25745 4417321 YP_804944.1 CDS PEPE_1471 NC_008525.1 1444587 1445564 R Beta-lactamase class C related penicillin binding protein complement(1444587..1445564) Pediococcus pentosaceus ATCC 25745 4417322 YP_804945.1 CDS PEPE_1472 NC_008525.1 1445582 1446619 R O-sialoglycoprotein endopeptidase complement(1445582..1446619) Pediococcus pentosaceus ATCC 25745 4417323 YP_804946.1 CDS PEPE_1473 NC_008525.1 1446606 1447220 R acetyltransferase complement(1446606..1447220) Pediococcus pentosaceus ATCC 25745 4417324 YP_804947.1 CDS PEPE_1474 NC_008525.1 1447183 1447911 R metal-dependent protease-like protein, putative molecular chaperone complement(1447183..1447911) Pediococcus pentosaceus ATCC 25745 4417325 YP_804948.1 CDS PEPE_1475 NC_008525.1 1448074 1449066 R UDP-galactose 4-epimerase complement(1448074..1449066) Pediococcus pentosaceus ATCC 25745 4417326 YP_804949.1 CDS PEPE_1476 NC_008525.1 1449112 1449849 R Acyl-ACP thioesterase complement(1449112..1449849) Pediococcus pentosaceus ATCC 25745 4417327 YP_804950.1 CDS PEPE_1477 NC_008525.1 1449859 1450737 R methyltransferase complement(1449859..1450737) Pediococcus pentosaceus ATCC 25745 4417328 YP_804951.1 CDS PEPE_1478 NC_008525.1 1450739 1451080 R regulator of replication initiation timing complement(1450739..1451080) Pediococcus pentosaceus ATCC 25745 4417329 YP_804952.1 CDS PEPE_1479 NC_008525.1 1451082 1452098 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1451082..1452098) Pediococcus pentosaceus ATCC 25745 4417330 YP_804953.1 CDS PEPE_1480 NC_008525.1 1452098 1452433 R hypothetical protein complement(1452098..1452433) Pediococcus pentosaceus ATCC 25745 4417331 YP_804954.1 CDS PEPE_1481 NC_008525.1 1452449 1453078 R thymidylate kinase complement(1452449..1453078) Pediococcus pentosaceus ATCC 25745 4417251 YP_804955.1 CDS recR NC_008525.1 1453243 1453842 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1453243..1453842) Pediococcus pentosaceus ATCC 25745 4417252 YP_804956.1 CDS PEPE_1483 NC_008525.1 1453869 1454183 R hypothetical protein complement(1453869..1454183) Pediococcus pentosaceus ATCC 25745 4417253 YP_804957.1 CDS PEPE_1484 NC_008525.1 1454199 1455944 R DNA polymerase III, gamma/tau subunit complement(1454199..1455944) Pediococcus pentosaceus ATCC 25745 4417254 YP_804958.1 CDS PEPE_1485 NC_008525.1 1456157 1456642 R tRNA-adenosine deaminase complement(1456157..1456642) Pediococcus pentosaceus ATCC 25745 4417255 YP_804959.1 CDS PEPE_1486 NC_008525.1 1456635 1457240 R 16S RNA G1207 methylase RsmC complement(1456635..1457240) Pediococcus pentosaceus ATCC 25745 4417256 YP_804960.1 CDS PEPE_1487 NC_008525.1 1457452 1457682 D ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit 1457452..1457682 Pediococcus pentosaceus ATCC 25745 4417257 YP_804961.1 CDS PEPE_1488 NC_008525.1 1457784 1459949 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1457784..1459949 Pediococcus pentosaceus ATCC 25745 4417258 YP_804962.1 CDS nrdF NC_008525.1 1459969 1460922 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1459969..1460922 Pediococcus pentosaceus ATCC 25745 4417259 YP_804963.1 CDS PEPE_1490 NC_008525.1 1461085 1461450 R 50S ribosomal protein L12 complement(1461085..1461450) Pediococcus pentosaceus ATCC 25745 4417260 YP_804964.1 CDS PEPE_1491 NC_008525.1 1461492 1461998 R 50S ribosomal protein L10 complement(1461492..1461998) Pediococcus pentosaceus ATCC 25745 4417261 YP_804965.1 CDS rplA NC_008525.1 1462198 1462887 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1462198..1462887) Pediococcus pentosaceus ATCC 25745 4417262 YP_804966.1 CDS rplK NC_008525.1 1462980 1463405 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1462980..1463405) Pediococcus pentosaceus ATCC 25745 4417263 YP_804967.1 CDS PEPE_1494 NC_008525.1 1463534 1464079 R transcription antitermination protein nusG complement(1463534..1464079) Pediococcus pentosaceus ATCC 25745 4417264 YP_804968.1 CDS PEPE_1495 NC_008525.1 1464187 1464345 R protein translocase subunit secE/sec61 gamma complement(1464187..1464345) Pediococcus pentosaceus ATCC 25745 4417265 YP_804969.1 CDS rpmG NC_008525.1 1464358 1464507 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 complement(1464358..1464507) Pediococcus pentosaceus ATCC 25745 4417266 YP_804970.1 CDS PEPE_1497 NC_008525.1 1464563 1465156 R ComX complement(1464563..1465156) Pediococcus pentosaceus ATCC 25745 4417267 YP_804971.1 CDS PEPE_1498 NC_008525.1 1465274 1466032 R rRNA methylase complement(1465274..1466032) Pediococcus pentosaceus ATCC 25745 4417268 YP_804972.1 CDS PEPE_1499 NC_008525.1 1466025 1466438 R ribonuclease III family protein complement(1466025..1466438) Pediococcus pentosaceus ATCC 25745 4417224 YP_804973.1 CDS PEPE_1500 NC_008525.1 1466431 1467843 R cysteinyl-tRNA synthetase complement(1466431..1467843) Pediococcus pentosaceus ATCC 25745 4417225 YP_804974.1 CDS gltX NC_008525.1 1468024 1469511 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1468024..1469511) Pediococcus pentosaceus ATCC 25745 4417226 YP_804975.1 CDS PEPE_1502 NC_008525.1 1469581 1470711 R integral membrane protein complement(1469581..1470711) Pediococcus pentosaceus ATCC 25745 4417227 YP_804976.1 CDS PEPE_1503 NC_008525.1 1470729 1472099 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1470729..1472099) Pediococcus pentosaceus ATCC 25745 4417228 YP_804977.1 CDS PEPE_1504 NC_008525.1 1472199 1472732 R deoxyuridine 5'-triphosphate nucleotidohydrolase complement(1472199..1472732) Pediococcus pentosaceus ATCC 25745 4417229 YP_804978.1 CDS PEPE_1505 NC_008525.1 1472869 1473198 D acetyltransferase 1472869..1473198 Pediococcus pentosaceus ATCC 25745 4417230 YP_804979.1 CDS PEPE_1506 NC_008525.1 1473202 1473888 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1473202..1473888 Pediococcus pentosaceus ATCC 25745 4417231 YP_804980.1 CDS PEPE_1507 NC_008525.1 1473958 1475304 D aminopeptidase C 1473958..1475304 Pediococcus pentosaceus ATCC 25745 4417232 YP_804981.1 CDS PEPE_1508 NC_008525.1 1475380 1475760 R transcriptional regulator complement(1475380..1475760) Pediococcus pentosaceus ATCC 25745 4417233 YP_804982.1 CDS PEPE_1509 NC_008525.1 1475824 1477011 R arabinose efflux permease complement(1475824..1477011) Pediococcus pentosaceus ATCC 25745 4417234 YP_804983.1 CDS PEPE_1510 NC_008525.1 1477164 1477844 R phosphoglycerate mutase complement(1477164..1477844) Pediococcus pentosaceus ATCC 25745 4417235 YP_804984.1 CDS PEPE_1511 NC_008525.1 1478016 1478987 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1478016..1478987) Pediococcus pentosaceus ATCC 25745 4417236 YP_804985.1 CDS PEPE_1512 NC_008525.1 1479229 1479690 D hypothetical protein 1479229..1479690 Pediococcus pentosaceus ATCC 25745 4417237 YP_804986.1 CDS PEPE_1513 NC_008525.1 1479748 1480248 R phosphotransferase system, mannose/fructose-specific component IIB complement(1479748..1480248) Pediococcus pentosaceus ATCC 25745 4417238 YP_804987.1 CDS PEPE_1514 NC_008525.1 1480280 1483210 R transcriptional regulator complement(1480280..1483210) Pediococcus pentosaceus ATCC 25745 4417239 YP_804988.1 CDS PEPE_1515 NC_008525.1 1483406 1483786 R hypothetical protein complement(1483406..1483786) Pediococcus pentosaceus ATCC 25745 4417240 YP_804989.1 CDS PEPE_1516 NC_008525.1 1483896 1484807 R mannose-specific PTS system component IID complement(1483896..1484807) Pediococcus pentosaceus ATCC 25745 4417208 YP_804990.1 CDS PEPE_1517 NC_008525.1 1484825 1485631 R mannose-specific PTS system component IIC complement(1484825..1485631) Pediococcus pentosaceus ATCC 25745 4417209 YP_804991.1 CDS PEPE_1518 NC_008525.1 1485659 1486630 R phosphotransferase system, mannose/fructose-specific component IIA complement(1485659..1486630) Pediococcus pentosaceus ATCC 25745 4417210 YP_804992.1 CDS PEPE_1520 NC_008525.1 1487284 1487730 R hypothetical protein complement(1487284..1487730) Pediococcus pentosaceus ATCC 25745 4417212 YP_804993.1 CDS PEPE_1521 NC_008525.1 1487732 1489900 R transcriptional accessory protein complement(1487732..1489900) Pediococcus pentosaceus ATCC 25745 4417213 YP_804994.1 CDS PEPE_1522 NC_008525.1 1489991 1490425 R hypothetical protein complement(1489991..1490425) Pediococcus pentosaceus ATCC 25745 4417214 YP_804995.1 CDS PEPE_1523 NC_008525.1 1490438 1493089 R cation transport ATPase complement(1490438..1493089) Pediococcus pentosaceus ATCC 25745 4417215 YP_804996.1 CDS nadE NC_008525.1 1493317 1494135 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1493317..1494135) Pediococcus pentosaceus ATCC 25745 4417216 YP_804997.1 CDS PEPE_1525 NC_008525.1 1494153 1495616 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(1494153..1495616) Pediococcus pentosaceus ATCC 25745 4417217 YP_804998.1 CDS PEPE_1526 NC_008525.1 1495724 1496455 D N-acetylmannosaminyltransferase 1495724..1496455 Pediococcus pentosaceus ATCC 25745 4417218 YP_804999.1 CDS PEPE_1527 NC_008525.1 1496483 1497184 R GntR family transcriptional regulator complement(1496483..1497184) Pediococcus pentosaceus ATCC 25745 4417219 YP_805000.1 CDS PEPE_1528 NC_008525.1 1497211 1498353 R N-acetylglucosamine 6-phosphate deacetylase complement(1497211..1498353) Pediococcus pentosaceus ATCC 25745 4417220 YP_805001.1 CDS PEPE_1529 NC_008525.1 1498419 1499210 R pyrroline-5-carboxylate reductase complement(1498419..1499210) Pediococcus pentosaceus ATCC 25745 4417221 YP_805002.1 CDS PEPE_1532 NC_008525.1 1499675 1500490 R phosphohydrolase complement(1499675..1500490) Pediococcus pentosaceus ATCC 25745 4417241 YP_805003.1 CDS PEPE_1533 NC_008525.1 1500495 1501028 R dihydrofolate reductase complement(1500495..1501028) Pediococcus pentosaceus ATCC 25745 4417242 YP_805004.1 CDS PEPE_1534 NC_008525.1 1501096 1502562 R dipeptide/tripeptide permease complement(1501096..1502562) Pediococcus pentosaceus ATCC 25745 4417243 YP_805005.1 CDS lysS NC_008525.1 1508447 1509943 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1508447..1509943) Pediococcus pentosaceus ATCC 25745 4417174 YP_805006.1 CDS PEPE_1543 NC_008525.1 1510010 1511008 R tRNA-dihydrouridine synthase complement(1510010..1511008) Pediococcus pentosaceus ATCC 25745 4417175 YP_805007.1 CDS hslO NC_008525.1 1511092 1512006 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(1511092..1512006) Pediococcus pentosaceus ATCC 25745 4417176 YP_805008.1 CDS PEPE_1545 NC_008525.1 1512029 1514110 R FtsH-2 peptidase complement(1512029..1514110) Pediococcus pentosaceus ATCC 25745 4417177 YP_805009.1 CDS PEPE_1546 NC_008525.1 1514204 1514740 R hypoxanthine phosphoribosyltransferase complement(1514204..1514740) Pediococcus pentosaceus ATCC 25745 4417178 YP_805010.1 CDS PEPE_1547 NC_008525.1 1514730 1516100 R tRNA(Ile)-lysidine synthetase, MesJ complement(1514730..1516100) Pediococcus pentosaceus ATCC 25745 4417179 YP_805011.1 CDS PEPE_1548 NC_008525.1 1516103 1516609 R RNA-binding protein complement(1516103..1516609) Pediococcus pentosaceus ATCC 25745 4417180 YP_805012.1 CDS PEPE_1549 NC_008525.1 1516759 1517115 R septum formation initiator complement(1516759..1517115) Pediococcus pentosaceus ATCC 25745 4417181 YP_805013.1 CDS PEPE_1550 NC_008525.1 1517188 1517457 R ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein complement(1517188..1517457) Pediococcus pentosaceus ATCC 25745 4417182 YP_805014.1 CDS PEPE_1551 NC_008525.1 1517454 1519037 R polysaccharide transporter complement(1517454..1519037) Pediococcus pentosaceus ATCC 25745 4417183 YP_805015.1 CDS PEPE_1552 NC_008525.1 1519047 1522544 R transcription-repair coupling factor complement(1519047..1522544) Pediococcus pentosaceus ATCC 25745 4417184 YP_805016.1 CDS PEPE_1553 NC_008525.1 1522563 1523120 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1522563..1523120) Pediococcus pentosaceus ATCC 25745 4417185 YP_805017.1 CDS PEPE_1554 NC_008525.1 1523371 1524333 D malate dehydrogenase (NAD) 1523371..1524333 Pediococcus pentosaceus ATCC 25745 4417186 YP_805018.1 CDS PEPE_1555 NC_008525.1 1524728 1526131 D hypothetical protein 1524728..1526131 Pediococcus pentosaceus ATCC 25745 4417187 YP_805019.1 CDS PEPE_1556 NC_008525.1 1526197 1526841 D hypothetical protein 1526197..1526841 Pediococcus pentosaceus ATCC 25745 4417188 YP_805020.1 CDS PEPE_1557 NC_008525.1 1526943 1527305 R toxin-antitoxin addiction module toxin component MazF (an endoRNAse) complement(1526943..1527305) Pediococcus pentosaceus ATCC 25745 4417189 YP_805021.1 CDS PEPE_1558 NC_008525.1 1527344 1527583 R hypothetical protein complement(1527344..1527583) Pediococcus pentosaceus ATCC 25745 4417190 YP_805022.1 CDS PEPE_1559 NC_008525.1 1527638 1528762 R alanine racemase complement(1527638..1528762) Pediococcus pentosaceus ATCC 25745 4417191 YP_805023.1 CDS PEPE_1560 NC_008525.1 1528764 1529120 R phosphopantetheinyl transferase (holo-ACP synthase) complement(1528764..1529120) Pediococcus pentosaceus ATCC 25745 4417192 YP_805024.1 CDS PEPE_1561 NC_008525.1 1529210 1530790 R superfamily II DNA/RNA helicase complement(1529210..1530790) Pediococcus pentosaceus ATCC 25745 4417193 YP_805025.1 CDS PEPE_1562 NC_008525.1 1531083 1532465 R UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1531083..1532465) Pediococcus pentosaceus ATCC 25745 4417194 YP_805026.1 CDS PEPE_1563 NC_008525.1 1532630 1533412 R hypothetical protein complement(1532630..1533412) Pediococcus pentosaceus ATCC 25745 4417195 YP_805027.1 CDS PEPE_1564 NC_008525.1 1533446 1534342 R putative metalloprotease; heat shock protein HtpX complement(1533446..1534342) Pediococcus pentosaceus ATCC 25745 4417196 YP_805028.1 CDS PEPE_1565 NC_008525.1 1534358 1534939 R hypothetical protein complement(1534358..1534939) Pediococcus pentosaceus ATCC 25745 4417197 YP_805029.1 CDS PEPE_1566 NC_008525.1 1535030 1535719 R sortase (surface protein transpeptidase) complement(1535030..1535719) Pediococcus pentosaceus ATCC 25745 4417198 YP_805030.1 CDS PEPE_1567 NC_008525.1 1535796 1537025 D major facilitator superfamily permease 1535796..1537025 Pediococcus pentosaceus ATCC 25745 4417199 YP_805031.1 CDS PEPE_1568 NC_008525.1 1537153 1537398 R 50S ribosomal protein L31 complement(1537153..1537398) Pediococcus pentosaceus ATCC 25745 4417200 YP_805032.1 CDS rho NC_008525.1 1537502 1538788 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(1537502..1538788) Pediococcus pentosaceus ATCC 25745 4417201 YP_805033.1 CDS PEPE_1570 NC_008525.1 1538814 1540085 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1538814..1540085) Pediococcus pentosaceus ATCC 25745 4417202 YP_805034.1 CDS pyrG NC_008525.1 1540235 1541833 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1540235..1541833) Pediococcus pentosaceus ATCC 25745 4417203 YP_805035.1 CDS PEPE_1572 NC_008525.1 1542046 1542582 R DNA-directed RNA polymerase, delta subunit complement(1542046..1542582) Pediococcus pentosaceus ATCC 25745 4417204 YP_805036.1 CDS PEPE_1573 NC_008525.1 1542627 1543067 R hypothetical protein complement(1542627..1543067) Pediococcus pentosaceus ATCC 25745 4417205 YP_805037.1 CDS PEPE_1574 NC_008525.1 1543221 1544570 D HD superfamily phosphohydrolase 1543221..1544570 Pediococcus pentosaceus ATCC 25745 4417206 YP_805038.1 CDS PEPE_1575 NC_008525.1 1544582 1545394 D HAD superfamily hydrolase 1544582..1545394 Pediococcus pentosaceus ATCC 25745 4417207 YP_805039.1 CDS PEPE_1576 NC_008525.1 1545383 1545763 R hypothetical protein complement(1545383..1545763) Pediococcus pentosaceus ATCC 25745 4417157 YP_805040.1 CDS PEPE_1577 NC_008525.1 1545896 1546837 D transcriptional regulator 1545896..1546837 Pediococcus pentosaceus ATCC 25745 4417158 YP_805041.1 CDS PEPE_1578 NC_008525.1 1546887 1547414 R hypothetical protein complement(1546887..1547414) Pediococcus pentosaceus ATCC 25745 4417159 YP_805042.1 CDS PEPE_1579 NC_008525.1 1547518 1548048 R hypothetical protein complement(1547518..1548048) Pediococcus pentosaceus ATCC 25745 4417160 YP_805043.1 CDS PEPE_1580 NC_008525.1 1548117 1549457 R Na+-driven multidrug efflux pump complement(1548117..1549457) Pediococcus pentosaceus ATCC 25745 4417161 YP_805044.1 CDS PEPE_1581 NC_008525.1 1549477 1550136 R metal-dependent membrane protease complement(1549477..1550136) Pediococcus pentosaceus ATCC 25745 4417162 YP_805045.1 CDS PEPE_1582 NC_008525.1 1550314 1550565 D hypothetical protein 1550314..1550565 Pediococcus pentosaceus ATCC 25745 4417163 YP_805046.1 CDS PEPE_1583 NC_008525.1 1550637 1551269 R phosphatase complement(1550637..1551269) Pediococcus pentosaceus ATCC 25745 4417164 YP_805047.1 CDS PEPE_1584 NC_008525.1 1551386 1553026 R ABC-type oligopeptide transport system, periplasmic component complement(1551386..1553026) Pediococcus pentosaceus ATCC 25745 4417165 YP_805048.1 CDS PEPE_1585 NC_008525.1 1553457 1555322 D FAD(NAD)-dependent oxidoreductase 1553457..1555322 Pediococcus pentosaceus ATCC 25745 4417166 YP_805049.1 CDS PEPE_1586 NC_008525.1 1555420 1556250 R hypothetical protein complement(1555420..1556250) Pediococcus pentosaceus ATCC 25745 4417167 YP_805050.1 CDS PEPE_1587 NC_008525.1 1556335 1557621 R D-alanyl transfer protein complement(1556335..1557621) Pediococcus pentosaceus ATCC 25745 4417168 YP_805051.1 CDS PEPE_1588 NC_008525.1 1557624 1557857 R D-alanyl carrier protein complement(1557624..1557857) Pediococcus pentosaceus ATCC 25745 4417169 YP_805052.1 CDS PEPE_1589 NC_008525.1 1557880 1559073 R D-alanyl transfer protein complement(1557880..1559073) Pediococcus pentosaceus ATCC 25745 4417170 YP_805053.1 CDS PEPE_1590 NC_008525.1 1559073 1560599 R D-alanine-activating enzyme complement(1559073..1560599) Pediococcus pentosaceus ATCC 25745 4417171 YP_805054.1 CDS PEPE_1591 NC_008525.1 1560619 1560768 R D-Ala-teichoic acid biosynthesis protein complement(1560619..1560768) Pediococcus pentosaceus ATCC 25745 4417172 YP_805055.1 CDS PEPE_1592 NC_008525.1 1561048 1561566 R hypothetical protein complement(1561048..1561566) Pediococcus pentosaceus ATCC 25745 4417173 YP_805056.1 CDS PEPE_1593 NC_008525.1 1561610 1562191 R hypothetical protein complement(1561610..1562191) Pediococcus pentosaceus ATCC 25745 4417139 YP_805057.1 CDS PEPE_1594 NC_008525.1 1562491 1562949 R transcriptional regulator complement(1562491..1562949) Pediococcus pentosaceus ATCC 25745 4417140 YP_805058.1 CDS PEPE_1595 NC_008525.1 1563098 1564576 D major facilitator superfamily permease 1563098..1564576 Pediococcus pentosaceus ATCC 25745 4417141 YP_805059.1 CDS PEPE_1596 NC_008525.1 1564576 1565340 D hypothetical protein 1564576..1565340 Pediococcus pentosaceus ATCC 25745 4417142 YP_805060.1 CDS PEPE_1597 NC_008525.1 1565391 1567073 R hypothetical protein complement(1565391..1567073) Pediococcus pentosaceus ATCC 25745 4417143 YP_805061.1 CDS PEPE_1598 NC_008525.1 1567108 1568406 R phosphotransferase system cellobiose-specific component IIC complement(1567108..1568406) Pediococcus pentosaceus ATCC 25745 4417144 YP_805062.1 CDS PEPE_1599 NC_008525.1 1568625 1569779 D AraC family transcriptional regulator 1568625..1569779 Pediococcus pentosaceus ATCC 25745 4417145 YP_805063.1 CDS PEPE_1600 NC_008525.1 1569870 1571147 R alpha/beta fold family hydrolase complement(1569870..1571147) Pediococcus pentosaceus ATCC 25745 4417146 YP_805064.1 CDS PEPE_1601 NC_008525.1 1571231 1572139 R transcriptional regulator/sugar kinase complement(1571231..1572139) Pediococcus pentosaceus ATCC 25745 4417147 YP_805065.1 CDS PEPE_1602 NC_008525.1 1572139 1573569 R Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase complement(1572139..1573569) Pediococcus pentosaceus ATCC 25745 4417148 YP_805066.1 CDS PEPE_1603 NC_008525.1 1573771 1574952 R CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase complement(1573771..1574952) Pediococcus pentosaceus ATCC 25745 4417149 YP_805067.1 CDS PEPE_1604 NC_008525.1 1575040 1576164 R Beta-lactamase class C related penicillin binding protein complement(1575040..1576164) Pediococcus pentosaceus ATCC 25745 4417150 YP_805068.1 CDS PEPE_1605 NC_008525.1 1576151 1577887 R hypothetical protein complement(1576151..1577887) Pediococcus pentosaceus ATCC 25745 4417151 YP_805069.1 CDS PEPE_1606 NC_008525.1 1577963 1579024 R ABC-type polysaccharide/polyol phosphate transport system, ATPase component complement(1577963..1579024) Pediococcus pentosaceus ATCC 25745 4417152 YP_805070.1 CDS PEPE_1607 NC_008525.1 1579040 1579855 R ABC-type polysaccharide/polyol phosphate export system, permease component complement(1579040..1579855) Pediococcus pentosaceus ATCC 25745 4417153 YP_805071.1 CDS PEPE_1608 NC_008525.1 1580042 1585033 D CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase 1580042..1585033 Pediococcus pentosaceus ATCC 25745 4417154 YP_805072.1 CDS PEPE_1609 NC_008525.1 1585116 1586744 R hypothetical protein complement(1585116..1586744) Pediococcus pentosaceus ATCC 25745 4417155 YP_805073.1 CDS PEPE_1610 NC_008525.1 1586744 1587670 R glycosyltransferase-like protein complement(1586744..1587670) Pediococcus pentosaceus ATCC 25745 4417156 YP_805074.1 CDS PEPE_1611 NC_008525.1 1587769 1588188 D GtcA family membrane protein 1587769..1588188 Pediococcus pentosaceus ATCC 25745 4417888 YP_805075.1 CDS PEPE_1612 NC_008525.1 1588200 1590227 R NAD-dependent DNA ligase complement(1588200..1590227) Pediococcus pentosaceus ATCC 25745 4417889 YP_805076.1 CDS PEPE_1613 NC_008525.1 1590245 1591000 R exonuclease III complement(1590245..1591000) Pediococcus pentosaceus ATCC 25745 4417890 YP_805077.1 CDS PEPE_1614 NC_008525.1 1591162 1591662 D phospholipid-binding protein 1591162..1591662 Pediococcus pentosaceus ATCC 25745 4417891 YP_805078.1 CDS PEPE_1615 NC_008525.1 1591775 1593520 R hypothetical protein complement(1591775..1593520) Pediococcus pentosaceus ATCC 25745 4417892 YP_805079.1 CDS PEPE_1616 NC_008525.1 1593737 1594708 R malate permease complement(1593737..1594708) Pediococcus pentosaceus ATCC 25745 4417893 YP_805080.1 CDS PEPE_1617 NC_008525.1 1594826 1596454 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(1594826..1596454) Pediococcus pentosaceus ATCC 25745 4417894 YP_805081.1 CDS PEPE_1618 NC_008525.1 1596590 1597477 D malolactic fermentation system transcription activator 1596590..1597477 Pediococcus pentosaceus ATCC 25745 4417895 YP_805082.1 CDS PEPE_1619 NC_008525.1 1597531 1598901 R NAD(FAD)-dependent dehydrogenase complement(1597531..1598901) Pediococcus pentosaceus ATCC 25745 4417896 YP_805083.1 CDS PEPE_1620 NC_008525.1 1599095 1600009 R Aryl-alcohol dehydrogenase related enzyme complement(1599095..1600009) Pediococcus pentosaceus ATCC 25745 4417897 YP_805084.1 CDS PEPE_1621 NC_008525.1 1600085 1600714 R HAD superfamily hydrolase complement(1600085..1600714) Pediococcus pentosaceus ATCC 25745 4417898 YP_805085.1 CDS PEPE_1622 NC_008525.1 1600844 1602364 D chloride channel protein EriC 1600844..1602364 Pediococcus pentosaceus ATCC 25745 4417899 YP_805086.1 CDS glpK NC_008525.1 1602712 1604226 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 1602712..1604226 Pediococcus pentosaceus ATCC 25745 4417900 YP_805087.1 CDS PEPE_1624 NC_008525.1 1604244 1606061 D glycerol-3-phosphate dehydrogenase 1604244..1606061 Pediococcus pentosaceus ATCC 25745 4417901 YP_805088.1 CDS PEPE_1625 NC_008525.1 1606075 1606794 D glycerol uptake facilitator related permease (major Intrinsic protein family) 1606075..1606794 Pediococcus pentosaceus ATCC 25745 4417902 YP_805089.1 CDS PEPE_1626 NC_008525.1 1606891 1608432 R C4-dicarboxylate anaerobic carrier dcuC complement(1606891..1608432) Pediococcus pentosaceus ATCC 25745 4417903 YP_805090.1 CDS PEPE_1627 NC_008525.1 1608804 1610225 R amino acid transporter complement(1608804..1610225) Pediococcus pentosaceus ATCC 25745 4417904 YP_805091.1 CDS PEPE_1628 NC_008525.1 1610391 1611809 R amino acid transporter complement(1610391..1611809) Pediococcus pentosaceus ATCC 25745 4417482 YP_805092.1 CDS PEPE_1629 NC_008525.1 1611905 1613128 R catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase complement(1611905..1613128) Pediococcus pentosaceus ATCC 25745 4417483 YP_805093.1 CDS PEPE_1630 NC_008525.1 1613181 1614110 R catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(1613181..1614110) Pediococcus pentosaceus ATCC 25745 4417484 YP_805094.1 CDS PEPE_1631 NC_008525.1 1614124 1615125 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1614124..1615125) Pediococcus pentosaceus ATCC 25745 4417485 YP_805095.1 CDS PEPE_1632 NC_008525.1 1615396 1616241 D signal transduction protein 1615396..1616241 Pediococcus pentosaceus ATCC 25745 4417486 YP_805096.1 CDS PEPE_1633 NC_008525.1 1616503 1618302 R oligopeptidase F complement(1616503..1618302) Pediococcus pentosaceus ATCC 25745 4417487 YP_805097.1 CDS PEPE_1634 NC_008525.1 1618370 1618837 R hypothetical protein complement(1618370..1618837) Pediococcus pentosaceus ATCC 25745 4417488 YP_805098.1 CDS PEPE_1635 NC_008525.1 1618984 1620159 R major facilitator superfamily permease complement(1618984..1620159) Pediococcus pentosaceus ATCC 25745 4417489 YP_805099.1 CDS PEPE_1636 NC_008525.1 1620259 1621242 R biotin operon repressor complement(1620259..1621242) Pediococcus pentosaceus ATCC 25745 4417490 YP_805100.1 CDS PEPE_1637 NC_008525.1 1621269 1621829 R hypothetical protein complement(1621269..1621829) Pediococcus pentosaceus ATCC 25745 4417491 YP_805101.1 CDS PEPE_1638 NC_008525.1 1622129 1622602 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(1622129..1622602) Pediococcus pentosaceus ATCC 25745 4417492 YP_805102.1 CDS PEPE_1639 NC_008525.1 1622680 1624248 R choline-glycine betaine transporter complement(1622680..1624248) Pediococcus pentosaceus ATCC 25745 4417493 YP_805103.1 CDS PEPE_1640 NC_008525.1 1624454 1625005 R galactoside O-acetyltransferase complement(1624454..1625005) Pediococcus pentosaceus ATCC 25745 4417494 YP_805104.1 CDS PEPE_1641 NC_008525.1 1625024 1626370 R NAD(FAD)-dependent dehydrogenase complement(1625024..1626370) Pediococcus pentosaceus ATCC 25745 4417495 YP_805105.1 CDS PEPE_1642 NC_008525.1 1626531 1627211 D C-di-GMP-specific phosphodiesterase 1626531..1627211 Pediococcus pentosaceus ATCC 25745 4417496 YP_805106.1 CDS PEPE_1643 NC_008525.1 1627272 1627694 R heat shock protein Hsp20 complement(1627272..1627694) Pediococcus pentosaceus ATCC 25745 4417497 YP_805107.1 CDS PEPE_1644 NC_008525.1 1627877 1628314 R nucleoside diphosphate kinase complement(1627877..1628314) Pediococcus pentosaceus ATCC 25745 4417498 YP_805108.1 CDS PEPE_1645 NC_008525.1 1628411 1630501 R cation transport ATPase complement(1628411..1630501) Pediococcus pentosaceus ATCC 25745 4417499 YP_805109.1 CDS PEPE_1646 NC_008525.1 1630503 1630955 R transcriptional regulator complement(1630503..1630955) Pediococcus pentosaceus ATCC 25745 4417535 YP_805110.1 CDS PEPE_1647 NC_008525.1 1631082 1631996 R DMT family permease complement(1631082..1631996) Pediococcus pentosaceus ATCC 25745 4417536 YP_805111.1 CDS PEPE_1648 NC_008525.1 1632151 1632594 R transcriptional regulator complement(1632151..1632594) Pediococcus pentosaceus ATCC 25745 4417537 YP_805112.1 CDS PEPE_1649 NC_008525.1 1632868 1634490 R ABC transporter ATPase complement(1632868..1634490) Pediococcus pentosaceus ATCC 25745 4417538 YP_805113.1 CDS PEPE_1650 NC_008525.1 1634738 1636675 R peptide ABC transporter ATPase complement(1634738..1636675) Pediococcus pentosaceus ATCC 25745 4417539 YP_805114.1 CDS PEPE_1651 NC_008525.1 1636704 1639409 R cation transport ATPase complement(1636704..1639409) Pediococcus pentosaceus ATCC 25745 4417540 YP_805115.1 CDS PEPE_1652 NC_008525.1 1639605 1640258 R glycine betaine/carnitine/choline ABC transporter, ATP-binding protein complement(1639605..1640258) Pediococcus pentosaceus ATCC 25745 4417541 YP_805116.1 CDS PEPE_1653 NC_008525.1 1640258 1641184 R periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) complement(1640258..1641184) Pediococcus pentosaceus ATCC 25745 4417542 YP_805117.1 CDS PEPE_1654 NC_008525.1 1641185 1641817 R glycine betaine/carnitine/choline ABC transporter, permease protein complement(1641185..1641817) Pediococcus pentosaceus ATCC 25745 4417543 YP_805118.1 CDS PEPE_1655 NC_008525.1 1641817 1643010 R ABC-type proline/glycine betaine transport system, ATPase component complement(1641817..1643010) Pediococcus pentosaceus ATCC 25745 4417544 YP_805119.1 CDS PEPE_1656 NC_008525.1 1643237 1644478 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 1643237..1644478 Pediococcus pentosaceus ATCC 25745 4417545 YP_805120.1 CDS PEPE_1657 NC_008525.1 1644540 1645580 D dehydrogenase related protein 1644540..1645580 Pediococcus pentosaceus ATCC 25745 4417546 YP_805121.1 CDS PEPE_1658 NC_008525.1 1645664 1647442 R ABC-type multidrug transport system, ATPase and permease component complement(1645664..1647442) Pediococcus pentosaceus ATCC 25745 4417547 YP_805122.1 CDS PEPE_1659 NC_008525.1 1647445 1648044 R transcriptional regulator complement(1647445..1648044) Pediococcus pentosaceus ATCC 25745 4417548 YP_805123.1 CDS PEPE_1660 NC_008525.1 1648272 1648640 R hypothetical protein complement(1648272..1648640) Pediococcus pentosaceus ATCC 25745 4417549 YP_805124.1 CDS PEPE_1661 NC_008525.1 1648643 1649206 R dihydroxyacetone kinase complement(1648643..1649206) Pediococcus pentosaceus ATCC 25745 4417550 YP_805125.1 CDS PEPE_1662 NC_008525.1 1649233 1650225 R with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK complement(1649233..1650225) Pediococcus pentosaceus ATCC 25745 4417551 YP_805126.1 CDS PEPE_1663 NC_008525.1 1650373 1651083 D RelA_SpoT domain-containing protein 1650373..1651083 Pediococcus pentosaceus ATCC 25745 4417464 YP_805127.1 CDS PEPE_1664 NC_008525.1 1651073 1651384 D hypothetical protein 1651073..1651384 Pediococcus pentosaceus ATCC 25745 4417465 YP_805128.1 CDS PEPE_1665 NC_008525.1 1651388 1652071 D putative NADPH-quinone reductase 1651388..1652071 Pediococcus pentosaceus ATCC 25745 4417466 YP_805129.1 CDS PEPE_1666 NC_008525.1 1652071 1652235 D hypothetical protein 1652071..1652235 Pediococcus pentosaceus ATCC 25745 4417467 YP_805130.1 CDS PEPE_1667 NC_008525.1 1652326 1652736 R hypothetical protein complement(1652326..1652736) Pediococcus pentosaceus ATCC 25745 4417468 YP_805131.1 CDS PEPE_1668 NC_008525.1 1652769 1653185 R hypothetical protein complement(1652769..1653185) Pediococcus pentosaceus ATCC 25745 4417469 YP_805132.1 CDS PEPE_1669 NC_008525.1 1653172 1653300 R hypothetical protein complement(1653172..1653300) Pediococcus pentosaceus ATCC 25745 4417470 YP_805133.1 CDS PEPE_1670 NC_008525.1 1653313 1653510 R hypothetical protein complement(1653313..1653510) Pediococcus pentosaceus ATCC 25745 4417471 YP_805134.1 CDS PEPE_1671 NC_008525.1 1653527 1654072 R hypothetical protein complement(1653527..1654072) Pediococcus pentosaceus ATCC 25745 4417472 YP_805135.1 CDS PEPE_1672 NC_008525.1 1654083 1654337 R hypothetical protein complement(1654083..1654337) Pediococcus pentosaceus ATCC 25745 4417473 YP_805136.1 CDS PEPE_1673 NC_008525.1 1654604 1654723 R hypothetical protein complement(1654604..1654723) Pediococcus pentosaceus ATCC 25745 4417474 YP_805137.1 CDS PEPE_1674 NC_008525.1 1654842 1655651 D HAD superfamily hydrolase 1654842..1655651 Pediococcus pentosaceus ATCC 25745 4417475 YP_805138.1 CDS PEPE_1675 NC_008525.1 1655713 1656453 R orotidine-5'-phosphate decarboxylase complement(1655713..1656453) Pediococcus pentosaceus ATCC 25745 4417476 YP_805139.1 CDS PEPE_1676 NC_008525.1 1656643 1657053 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1656643..1657053 Pediococcus pentosaceus ATCC 25745 4417477 YP_805140.1 CDS PEPE_1677 NC_008525.1 1657146 1657661 R spermine/spermidine N-acetyltransferase complement(1657146..1657661) Pediococcus pentosaceus ATCC 25745 4417478 YP_805141.1 CDS PEPE_1678 NC_008525.1 1657672 1658124 R MarR family transcriptional regulator complement(1657672..1658124) Pediococcus pentosaceus ATCC 25745 4417479 YP_805142.1 CDS PEPE_1679 NC_008525.1 1658179 1658814 R TetR family transcriptional regulator complement(1658179..1658814) Pediococcus pentosaceus ATCC 25745 4417480 YP_805143.1 CDS PEPE_1680 NC_008525.1 1658818 1659960 R ABC-type multidrug transport system, permease component complement(1658818..1659960) Pediococcus pentosaceus ATCC 25745 4417481 YP_805144.1 CDS PEPE_1681 NC_008525.1 1659960 1660682 R ABC-type multidrug transport system, ATPase component complement(1659960..1660682) Pediococcus pentosaceus ATCC 25745 4417518 YP_805145.1 CDS PEPE_1682 NC_008525.1 1661100 1661417 R gamma-carboxymuconolactone decarboxylase subunit-like protein complement(1661100..1661417) Pediococcus pentosaceus ATCC 25745 4417519 YP_805146.1 CDS PEPE_1683 NC_008525.1 1661417 1661833 R double-stranded beta-helix-like protein complement(1661417..1661833) Pediococcus pentosaceus ATCC 25745 4417520 YP_805147.1 CDS PEPE_1684 NC_008525.1 1661850 1662320 R flavodoxin complement(1661850..1662320) Pediococcus pentosaceus ATCC 25745 4417521 YP_805148.1 CDS PEPE_1685 NC_008525.1 1662416 1663300 R LysR family transcriptional regulator complement(1662416..1663300) Pediococcus pentosaceus ATCC 25745 4417522 YP_805149.1 CDS PEPE_1686 NC_008525.1 1663367 1663894 D acetyltransferase 1663367..1663894 Pediococcus pentosaceus ATCC 25745 4417523 YP_805151.1 CDS PEPE_1688 NC_008525.1 1664029 1665204 D major facilitator superfamily permease 1664029..1665204 Pediococcus pentosaceus ATCC 25745 4417525 YP_805152.1 CDS PEPE_1689 NC_008525.1 1665263 1665529 R hypothetical protein complement(1665263..1665529) Pediococcus pentosaceus ATCC 25745 4417526 YP_805153.1 CDS PEPE_1690 NC_008525.1 1665550 1666380 R PP family ATPase complement(1665550..1666380) Pediococcus pentosaceus ATCC 25745 4417527 YP_805154.1 CDS PEPE_1691 NC_008525.1 1666412 1667125 R glycerol uptake facilitator related permease (major Intrinsic protein family) complement(1666412..1667125) Pediococcus pentosaceus ATCC 25745 4417528 YP_805155.1 CDS PEPE_1692 NC_008525.1 1667151 1668398 R hypothetical protein complement(1667151..1668398) Pediococcus pentosaceus ATCC 25745 4417529 YP_805156.1 CDS PEPE_1693 NC_008525.1 1668404 1669144 R NCAIR mutase (PurE)-related protein complement(1668404..1669144) Pediococcus pentosaceus ATCC 25745 4417530 YP_805157.1 CDS PEPE_1694 NC_008525.1 1669167 1670441 R hypothetical protein complement(1669167..1670441) Pediococcus pentosaceus ATCC 25745 4417531 YP_805158.1 CDS PEPE_1695 NC_008525.1 1670612 1671265 D cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase 1670612..1671265 Pediococcus pentosaceus ATCC 25745 4417532 YP_805159.1 CDS PEPE_1696 NC_008525.1 1671286 1672293 D high-affinity nickel permease 1671286..1672293 Pediococcus pentosaceus ATCC 25745 4417533 YP_805160.1 CDS PEPE_1697 NC_008525.1 1672414 1673298 R ribose transport protein complement(1672414..1673298) Pediococcus pentosaceus ATCC 25745 4417534 YP_805161.1 CDS PEPE_1698 NC_008525.1 1673336 1673731 R cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase complement(1673336..1673731) Pediococcus pentosaceus ATCC 25745 4417500 YP_805162.1 CDS PEPE_1699 NC_008525.1 1673744 1674652 R ribokinase family sugar kinase complement(1673744..1674652) Pediococcus pentosaceus ATCC 25745 4417501 YP_805163.1 CDS PEPE_1700 NC_008525.1 1674749 1675747 R LacI family transcription regulator complement(1674749..1675747) Pediococcus pentosaceus ATCC 25745 4417502 YP_805164.1 CDS PEPE_1701 NC_008525.1 1675896 1677239 R manganese transport protein MntH complement(1675896..1677239) Pediococcus pentosaceus ATCC 25745 4417503 YP_805165.1 CDS PEPE_1702 NC_008525.1 1677920 1679773 R hypothetical protein complement(1677920..1679773) Pediococcus pentosaceus ATCC 25745 4417504 YP_805166.1 CDS PEPE_1703 NC_008525.1 1679802 1681763 R glycosyltransferase complement(1679802..1681763) Pediococcus pentosaceus ATCC 25745 4417505 YP_805167.1 CDS PEPE_1704 NC_008525.1 1681741 1682838 R glycosyltransferase-like protein complement(1681741..1682838) Pediococcus pentosaceus ATCC 25745 4417506 YP_805168.1 CDS PEPE_1705 NC_008525.1 1683216 1683824 D fructose-2,6-bisphosphatase 1683216..1683824 Pediococcus pentosaceus ATCC 25745 4417507 YP_805169.1 CDS PEPE_1706 NC_008525.1 1683875 1684528 R hypothetical protein complement(1683875..1684528) Pediococcus pentosaceus ATCC 25745 4417508 YP_805170.1 CDS PEPE_1707 NC_008525.1 1684664 1685224 R site-specific recombinase, DNA invertase Pin related proteins complement(1684664..1685224) Pediococcus pentosaceus ATCC 25745 4417509 YP_805171.1 CDS PEPE_1708 NC_008525.1 1685496 1686128 R nucleoside-diphosphate-sugar epimerase complement(1685496..1686128) Pediococcus pentosaceus ATCC 25745 4417510 YP_805172.1 CDS PEPE_1709 NC_008525.1 1686256 1686942 R Solo B3/4 domain-containing protein complement(1686256..1686942) Pediococcus pentosaceus ATCC 25745 4417511 YP_805173.1 CDS gpmA NC_008525.1 1687072 1687761 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1687072..1687761) Pediococcus pentosaceus ATCC 25745 4417512 YP_805174.1 CDS PEPE_1711 NC_008525.1 1687883 1688788 R lipoprotein complement(1687883..1688788) Pediococcus pentosaceus ATCC 25745 4417513 YP_805175.1 CDS PEPE_1712 NC_008525.1 1688944 1690119 D cyclopropane-fatty-acyl-phospholipid synthase 1688944..1690119 Pediococcus pentosaceus ATCC 25745 4417514 YP_805176.1 CDS PEPE_1713 NC_008525.1 1690261 1690593 R hypothetical protein complement(1690261..1690593) Pediococcus pentosaceus ATCC 25745 4417515 YP_805177.1 CDS PEPE_1714 NC_008525.1 1690614 1691402 R branched-chain amino acid permease (azaleucine resistance) complement(1690614..1691402) Pediococcus pentosaceus ATCC 25745 4417516 YP_805178.1 CDS PEPE_1715 NC_008525.1 1691534 1692790 R D-alanyl-D-alanine carboxypeptidase complement(1691534..1692790) Pediococcus pentosaceus ATCC 25745 4417517 YP_805179.1 CDS PEPE_1716 NC_008525.1 1692971 1694107 R Signal transduction histidine kinase complement(1692971..1694107) Pediococcus pentosaceus ATCC 25745 4417394 YP_805180.1 CDS PEPE_1717 NC_008525.1 1694119 1694808 R DNA-binding response regulator complement(1694119..1694808) Pediococcus pentosaceus ATCC 25745 4417395 YP_805181.1 CDS PEPE_1718 NC_008525.1 1694891 1695388 R methylated DNA-protein cysteine methyltransferase complement(1694891..1695388) Pediococcus pentosaceus ATCC 25745 4417396 YP_805182.1 CDS PEPE_1719 NC_008525.1 1695519 1696661 R inosine-5'-monophosphate dehydrogenase complement(1695519..1696661) Pediococcus pentosaceus ATCC 25745 4417397 YP_805183.1 CDS PEPE_1720 NC_008525.1 1696683 1697387 R hypothetical protein complement(1696683..1697387) Pediococcus pentosaceus ATCC 25745 4417398 YP_805184.1 CDS PEPE_1721 NC_008525.1 1697416 1698522 R GTPase, translation factor complement(1697416..1698522) Pediococcus pentosaceus ATCC 25745 4417399 YP_805185.1 CDS PEPE_1722 NC_008525.1 1698739 1698924 R hypothetical protein complement(1698739..1698924) Pediococcus pentosaceus ATCC 25745 4417400 YP_805186.1 CDS PEPE_1723 NC_008525.1 1698938 1699789 R chromosome segregation DNA-binding protein complement(1698938..1699789) Pediococcus pentosaceus ATCC 25745 4417401 YP_805187.1 CDS PEPE_1724 NC_008525.1 1699802 1700533 R cell division SAM-dependent methyltransferase complement(1699802..1700533) Pediococcus pentosaceus ATCC 25745 4417402 YP_805188.1 CDS PEPE_1725 NC_008525.1 1700667 1701140 D acetyltransferase 1700667..1701140 Pediococcus pentosaceus ATCC 25745 4417403 YP_805189.1 CDS PEPE_1726 NC_008525.1 1701210 1702124 R catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides; ribonucleoside hydrolase RihC complement(1701210..1702124) Pediococcus pentosaceus ATCC 25745 4417404 YP_805190.1 CDS PEPE_1727 NC_008525.1 1702243 1703511 R nucleoside permease complement(1702243..1703511) Pediococcus pentosaceus ATCC 25745 4417405 YP_805191.1 CDS PEPE_1728 NC_008525.1 1703675 1706026 R Rad3-related DNA helicase complement(1703675..1706026) Pediococcus pentosaceus ATCC 25745 4417406 YP_805192.1 CDS PEPE_1729 NC_008525.1 1706136 1706645 D cell wall-associated hydrolase 1706136..1706645 Pediococcus pentosaceus ATCC 25745 4417407 YP_805193.1 CDS PEPE_1730 NC_008525.1 1706689 1707216 R hypothetical protein complement(1706689..1707216) Pediococcus pentosaceus ATCC 25745 4417408 YP_805194.1 CDS PEPE_1731 NC_008525.1 1707292 1708509 R major facilitator superfamily permease complement(1707292..1708509) Pediococcus pentosaceus ATCC 25745 4417409 YP_805195.1 CDS PEPE_1732 NC_008525.1 1708637 1710112 D tRNA (uracil-5-)-methyltransferase related enzyme 1708637..1710112 Pediococcus pentosaceus ATCC 25745 4417410 YP_805196.1 CDS PEPE_1733 NC_008525.1 1710184 1710759 R DNA-binding response regulator complement(1710184..1710759) Pediococcus pentosaceus ATCC 25745 4417429 YP_805197.1 CDS PEPE_1734 NC_008525.1 1710795 1711910 R Signal transduction histidine kinase complement(1710795..1711910) Pediococcus pentosaceus ATCC 25745 4417430 YP_805198.1 CDS PEPE_1735 NC_008525.1 1711903 1712652 R ABC-type multidrug transport system, permease component complement(1711903..1712652) Pediococcus pentosaceus ATCC 25745 4417431 YP_805199.1 CDS PEPE_1736 NC_008525.1 1712636 1713526 R ABC-type multidrug transport system, ATPase component complement(1712636..1713526) Pediococcus pentosaceus ATCC 25745 4417432 YP_805200.1 CDS PEPE_1737 NC_008525.1 1713727 1714344 D hypothetical protein 1713727..1714344 Pediococcus pentosaceus ATCC 25745 4417433 YP_805201.1 CDS PEPE_1738 NC_008525.1 1714403 1714612 D hypothetical protein 1714403..1714612 Pediococcus pentosaceus ATCC 25745 4417434 YP_805202.1 CDS PEPE_1739 NC_008525.1 1714640 1715368 D hypothetical protein 1714640..1715368 Pediococcus pentosaceus ATCC 25745 4417435 YP_805203.1 CDS PEPE_1740 NC_008525.1 1715420 1717354 R acyltransferase complement(1715420..1717354) Pediococcus pentosaceus ATCC 25745 4417436 YP_805204.1 CDS PEPE_1741 NC_008525.1 1717673 1718236 D Rossmann fold nucleotide-binding protein 1717673..1718236 Pediococcus pentosaceus ATCC 25745 4417437 YP_805205.1 CDS PEPE_1742 NC_008525.1 1718278 1718568 R hypothetical protein complement(1718278..1718568) Pediococcus pentosaceus ATCC 25745 4417438 YP_805206.1 CDS PEPE_1743 NC_008525.1 1718728 1719486 D peptide ABC transporter ATPase 1718728..1719486 Pediococcus pentosaceus ATCC 25745 4417439 YP_805207.1 CDS PEPE_1744 NC_008525.1 1719498 1721309 D peptide ABC transporter permease 1719498..1721309 Pediococcus pentosaceus ATCC 25745 4417440 YP_805208.1 CDS PEPE_1745 NC_008525.1 1721362 1722660 R catalyzes the formation of pyruvate from serine; D-serine dehydratase complement(1721362..1722660) Pediococcus pentosaceus ATCC 25745 4417441 YP_805209.1 CDS PEPE_1746 NC_008525.1 1722732 1723355 R DNA-3-methyladenine glycosylase III complement(1722732..1723355) Pediococcus pentosaceus ATCC 25745 4417442 YP_805210.1 CDS PEPE_1747 NC_008525.1 1723472 1724890 D dipeptidase A 1723472..1724890 Pediococcus pentosaceus ATCC 25745 4417443 YP_805211.1 CDS PEPE_1748 NC_008525.1 1724945 1725835 R Beta-lactamase class A complement(1724945..1725835) Pediococcus pentosaceus ATCC 25745 4417444 YP_805212.1 CDS PEPE_1749 NC_008525.1 1726046 1726258 R hypothetical protein complement(1726046..1726258) Pediococcus pentosaceus ATCC 25745 4417445 YP_805213.1 CDS PEPE_1750 NC_008525.1 1726449 1726673 R hypothetical protein complement(1726449..1726673) Pediococcus pentosaceus ATCC 25745 4417446 YP_805214.1 CDS PEPE_1751 NC_008525.1 1726736 1726945 R hypothetical protein complement(1726736..1726945) Pediococcus pentosaceus ATCC 25745 4417447 YP_805215.1 CDS PEPE_1752 NC_008525.1 1727194 1727463 D hypothetical protein 1727194..1727463 Pediococcus pentosaceus ATCC 25745 4417448 YP_805216.1 CDS PEPE_1753 NC_008525.1 1727688 1728140 D transcriptional regulator 1727688..1728140 Pediococcus pentosaceus ATCC 25745 4417449 YP_805217.1 CDS PEPE_1754 NC_008525.1 1728893 1730038 R N-acetylglucosamine 6-phosphate deacetylase complement(1728893..1730038) Pediococcus pentosaceus ATCC 25745 4417450 YP_805218.1 CDS PEPE_1755 NC_008525.1 1730050 1731225 R phosphosugar isomerase complement(1730050..1731225) Pediococcus pentosaceus ATCC 25745 4417451 YP_805219.1 CDS PEPE_1756 NC_008525.1 1731249 1731983 R GntR family transcriptional regulator complement(1731249..1731983) Pediococcus pentosaceus ATCC 25745 4417452 YP_805220.1 CDS PEPE_1757 NC_008525.1 1732063 1732887 R phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID complement(1732063..1732887) Pediococcus pentosaceus ATCC 25745 4417453 YP_805221.1 CDS PEPE_1758 NC_008525.1 1732871 1733788 R phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC complement(1732871..1733788) Pediococcus pentosaceus ATCC 25745 4417454 YP_805222.1 CDS PEPE_1759 NC_008525.1 1733804 1734298 R phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB complement(1733804..1734298) Pediococcus pentosaceus ATCC 25745 4417455 YP_805223.1 CDS PEPE_1760 NC_008525.1 1734326 1736350 R hypothetical protein complement(1734326..1736350) Pediococcus pentosaceus ATCC 25745 4417456 YP_805224.1 CDS PEPE_1761 NC_008525.1 1736356 1736751 R phosphotransferase system, mannose/fructose-specific component IIA complement(1736356..1736751) Pediococcus pentosaceus ATCC 25745 4417457 YP_805225.1 CDS PEPE_1762 NC_008525.1 1737082 1738590 R hypothetical protein complement(1737082..1738590) Pediococcus pentosaceus ATCC 25745 4417458 YP_805226.1 CDS PEPE_1763 NC_008525.1 1738674 1739552 R galactose mutarotase-like protein complement(1738674..1739552) Pediococcus pentosaceus ATCC 25745 4417459 YP_805227.1 CDS PEPE_1764 NC_008525.1 1739809 1740315 D hypothetical protein 1739809..1740315 Pediococcus pentosaceus ATCC 25745 4417460 YP_805228.1 CDS PEPE_1765 NC_008525.1 1740430 1740906 D hypothetical protein 1740430..1740906 Pediococcus pentosaceus ATCC 25745 4417461 YP_805229.1 CDS PEPE_1766 NC_008525.1 1740979 1742016 R NADPH:quinone reductase related Zn-dependent oxidoreductase complement(1740979..1742016) Pediococcus pentosaceus ATCC 25745 4417462 YP_805230.1 CDS PEPE_1767 NC_008525.1 1742133 1742561 R BadM/Rrf2 family transcriptional regulator complement(1742133..1742561) Pediococcus pentosaceus ATCC 25745 4417463 YP_805231.1 CDS PEPE_1768 NC_008525.1 1742571 1743422 R nucleoside-diphosphate-sugar epimerase complement(1742571..1743422) Pediococcus pentosaceus ATCC 25745 4417411 YP_805232.1 CDS PEPE_1769 NC_008525.1 1743567 1743770 R hypothetical protein complement(1743567..1743770) Pediococcus pentosaceus ATCC 25745 4417412 YP_805233.1 CDS PEPE_1770 NC_008525.1 1743914 1745320 R E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1743914..1745320) Pediococcus pentosaceus ATCC 25745 4417413 YP_805234.1 CDS PEPE_1771 NC_008525.1 1745323 1746612 R pyruvate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component complement(1745323..1746612) Pediococcus pentosaceus ATCC 25745 4417414 YP_805235.1 CDS PEPE_1772 NC_008525.1 1746605 1747585 R pyruvate dehydrogenase (E1) component, beta subunit complement(1746605..1747585) Pediococcus pentosaceus ATCC 25745 4417415 YP_805236.1 CDS PEPE_1773 NC_008525.1 1747588 1748706 R pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, alpha subunit complement(1747588..1748706) Pediococcus pentosaceus ATCC 25745 4417416 YP_805237.1 CDS PEPE_1774 NC_008525.1 1748718 1749704 R lipoate-protein ligase complement(1748718..1749704) Pediococcus pentosaceus ATCC 25745 4417417 YP_805238.1 CDS PEPE_1775 NC_008525.1 1749973 1751316 R cellobiose-specific PTS system IIC component complement(1749973..1751316) Pediococcus pentosaceus ATCC 25745 4417418 YP_805239.1 CDS PEPE_1776 NC_008525.1 1751331 1752713 R Beta-glucosidase/6-phospho-beta- glucosidase/beta-galactosidase complement(1751331..1752713) Pediococcus pentosaceus ATCC 25745 4417419 YP_805240.1 CDS PEPE_1777 NC_008525.1 1752873 1753586 D GntR family transcriptional regulator 1752873..1753586 Pediococcus pentosaceus ATCC 25745 4417420 YP_805241.1 CDS PEPE_1778 NC_008525.1 1753623 1754276 R p-nitrobenzoate reductase complement(1753623..1754276) Pediococcus pentosaceus ATCC 25745 4417421 YP_805242.1 CDS PEPE_1779 NC_008525.1 1754534 1755169 R hypothetical protein complement(1754534..1755169) Pediococcus pentosaceus ATCC 25745 4417422 YP_805243.1 CDS PEPE_1780 NC_008525.1 1755310 1758702 R hypothetical protein complement(1755310..1758702) Pediococcus pentosaceus ATCC 25745 4417423 YP_805244.1 CDS PEPE_1781 NC_008525.1 1758772 1759092 R ArsR family transcriptional regulator complement(1758772..1759092) Pediococcus pentosaceus ATCC 25745 4417424 YP_805245.1 CDS PEPE_1782 NC_008525.1 1759184 1759729 R BS_ykrK family protein complement(1759184..1759729) Pediococcus pentosaceus ATCC 25745 4417425 YP_805246.1 CDS PEPE_1783 NC_008525.1 1759707 1760570 R hypothetical protein complement(1759707..1760570) Pediococcus pentosaceus ATCC 25745 4417426 YP_805247.1 CDS PEPE_1784 NC_008525.1 1760773 1761612 D SAM-dependent methyltransferase 1760773..1761612 Pediococcus pentosaceus ATCC 25745 4417427 YP_805248.1 CDS PEPE_1785 NC_008525.1 1762030 1763835 R hypothetical protein complement(1762030..1763835) Pediococcus pentosaceus ATCC 25745 4417428 YP_805249.1 CDS PEPE_1786 NC_008525.1 1763978 1764598 R hypothetical protein complement(1763978..1764598) Pediococcus pentosaceus ATCC 25745 4417332 YP_805250.1 CDS PEPE_1787 NC_008525.1 1764614 1765090 R hypothetical protein complement(1764614..1765090) Pediococcus pentosaceus ATCC 25745 4417333 YP_805251.1 CDS PEPE_1788 NC_008525.1 1765244 1766080 D Mn-containing catalase 1765244..1766080 Pediococcus pentosaceus ATCC 25745 4417334 YP_805252.1 CDS PEPE_1789 NC_008525.1 1766132 1766857 R C-di-GMP-specific phosphodiesterase complement(1766132..1766857) Pediococcus pentosaceus ATCC 25745 4417335 YP_805253.1 CDS PEPE_1790 NC_008525.1 1766854 1768056 R Signal transduction diguanylate cyclase complement(1766854..1768056) Pediococcus pentosaceus ATCC 25745 4417336 YP_805254.1 CDS PEPE_1791 NC_008525.1 1768736 1770178 D major facilitator superfamily permease 1768736..1770178 Pediococcus pentosaceus ATCC 25745 4417337 YP_805255.1 CDS PEPE_1792 NC_008525.1 1770231 1771481 R trypsin-like serine protease complement(1770231..1771481) Pediococcus pentosaceus ATCC 25745 4417338 YP_805256.1 CDS PEPE_1793 NC_008525.1 1771594 1772397 R beta-lactamase superfamily hydrolase complement(1771594..1772397) Pediococcus pentosaceus ATCC 25745 4417339 YP_805257.1 CDS PEPE_1794 NC_008525.1 1772470 1773468 R hypothetical protein complement(1772470..1773468) Pediococcus pentosaceus ATCC 25745 4417340 YP_805258.1 CDS PEPE_1795 NC_008525.1 1773480 1774775 R hypothetical protein complement(1773480..1774775) Pediococcus pentosaceus ATCC 25745 4417341 YP_805259.1 CDS PEPE_1796 NC_008525.1 1774775 1776622 R PAS/PAC sensor signal transduction histidine kinase complement(1774775..1776622) Pediococcus pentosaceus ATCC 25745 4417342 YP_805260.1 CDS PEPE_1797 NC_008525.1 1776648 1777349 R DNA-binding response regulator complement(1776648..1777349) Pediococcus pentosaceus ATCC 25745 4417343 YP_805261.1 CDS PEPE_1799 NC_008525.1 1777790 1778164 R hypothetical protein complement(1777790..1778164) Pediococcus pentosaceus ATCC 25745 4417345 YP_805262.1 CDS PEPE_1800 NC_008525.1 1778258 1779139 R hypothetical protein complement(1778258..1779139) Pediococcus pentosaceus ATCC 25745 4417346 YP_805263.1 CDS PEPE_1801 NC_008525.1 1779220 1779816 R saccharopine dehydrogenase related protein complement(1779220..1779816) Pediococcus pentosaceus ATCC 25745 4417347 YP_805264.1 CDS PEPE_1802 NC_008525.1 1779843 1781165 R major facilitator superfamily permease complement(1779843..1781165) Pediococcus pentosaceus ATCC 25745 4417348 YP_805265.1 CDS PEPE_1803 NC_008525.1 1781385 1782206 R HAD superfamily hydrolase complement(1781385..1782206) Pediococcus pentosaceus ATCC 25745 4417349 YP_805266.1 CDS PEPE_1804 NC_008525.1 1782238 1784211 R Beta-glucoside-specific PTS system IIABC component complement(1782238..1784211) Pediococcus pentosaceus ATCC 25745 4417350 YP_805267.1 CDS PEPE_1805 NC_008525.1 1784429 1785151 D GntR family transcriptional regulator 1784429..1785151 Pediococcus pentosaceus ATCC 25745 4417351 YP_805268.1 CDS PEPE_1806 NC_008525.1 1785154 1786800 D alpha, alpha-phosphotrehalase 1785154..1786800 Pediococcus pentosaceus ATCC 25745 4417352 YP_805269.1 CDS PEPE_1807 NC_008525.1 1786879 1787163 R hypothetical protein complement(1786879..1787163) Pediococcus pentosaceus ATCC 25745 4417353 YP_805270.1 CDS PEPE_1809 NC_008525.1 1787563 1788252 D transcriptional regulator 1787563..1788252 Pediococcus pentosaceus ATCC 25745 4417355 YP_805271.1 CDS PEPE_1810 NC_008525.1 1788363 1790462 D NhaP-type Na+/H+ and K+/H+ antiporter 1788363..1790462 Pediococcus pentosaceus ATCC 25745 4417356 YP_805272.1 CDS PEPE_1811 NC_008525.1 1790893 1791156 D hypothetical protein 1790893..1791156 Pediococcus pentosaceus ATCC 25745 4417357 YP_805273.1 CDS PEPE_1812 NC_008525.1 1791361 1791783 D large-conductance mechanosensitive channel 1791361..1791783 Pediococcus pentosaceus ATCC 25745 4417358 YP_805274.1 CDS PEPE_1813 NC_008525.1 1791835 1794165 R peptide ABC transporter ATPase complement(1791835..1794165) Pediococcus pentosaceus ATCC 25745 4417359 YP_805275.1 CDS PEPE_1814 NC_008525.1 1794297 1794770 D transcriptional regulator 1794297..1794770 Pediococcus pentosaceus ATCC 25745 4417360 YP_805276.1 CDS PEPE_1815 NC_008525.1 1794833 1795180 R hypothetical protein complement(1794833..1795180) Pediococcus pentosaceus ATCC 25745 4417361 YP_805277.1 CDS PEPE_1816 NC_008525.1 1795268 1797247 R N-acetylglucosamine and glucose PTS, EIICBA complement(1795268..1797247) Pediococcus pentosaceus ATCC 25745 4417362 YP_805278.1 CDS PEPE_1817 NC_008525.1 1797532 1798002 R 6,7-dimethyl-8-ribityllumazine synthase complement(1797532..1798002) Pediococcus pentosaceus ATCC 25745 4417363 YP_805279.1 CDS PEPE_1818 NC_008525.1 1798003 1799217 R GTP cyclohydrolase II complement(1798003..1799217) Pediococcus pentosaceus ATCC 25745 4417364 YP_805280.1 CDS PEPE_1819 NC_008525.1 1799207 1799812 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1799207..1799812) Pediococcus pentosaceus ATCC 25745 4417365 YP_805281.1 CDS PEPE_1820 NC_008525.1 1799813 1800874 R diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(1799813..1800874) Pediococcus pentosaceus ATCC 25745 4417377 YP_805282.1 CDS PEPE_1821 NC_008525.1 1801315 1802685 D NAD-dependent aldehyde dehydrogenase 1801315..1802685 Pediococcus pentosaceus ATCC 25745 4417378 YP_805283.1 CDS PEPE_1822 NC_008525.1 1802773 1803960 D acetate kinase 1802773..1803960 Pediococcus pentosaceus ATCC 25745 4417379 YP_805284.1 CDS PEPE_1823 NC_008525.1 1804064 1804384 D PadR family transcriptional regulator 1804064..1804384 Pediococcus pentosaceus ATCC 25745 4417380 YP_805285.1 CDS PEPE_1824 NC_008525.1 1804377 1804997 D hypothetical protein 1804377..1804997 Pediococcus pentosaceus ATCC 25745 4417381 YP_805286.1 CDS PEPE_1825 NC_008525.1 1804997 1805917 D hypothetical protein 1804997..1805917 Pediococcus pentosaceus ATCC 25745 4417382 YP_805287.1 CDS PEPE_1826 NC_008525.1 1805949 1807022 R microcin C7 resistance MccF-like protein complement(1805949..1807022) Pediococcus pentosaceus ATCC 25745 4417383 YP_805288.1 CDS PEPE_1827 NC_008525.1 1807228 1807455 D hypothetical protein 1807228..1807455 Pediococcus pentosaceus ATCC 25745 4417384 YP_805289.1 CDS PEPE_1828 NC_008525.1 1807482 1808102 R hypothetical protein complement(1807482..1808102) Pediococcus pentosaceus ATCC 25745 4417385 YP_805290.1 CDS PEPE_1829 NC_008525.1 1808227 1808421 D transcriptional regulator 1808227..1808421 Pediococcus pentosaceus ATCC 25745 4417386 YP_805291.1 CDS PEPE_1830 NC_008525.1 1808436 1808876 D hypothetical protein 1808436..1808876 Pediococcus pentosaceus ATCC 25745 4417387 YP_805292.1 CDS PEPE_1831 NC_008525.1 1809020 1809499 R hypothetical protein complement(1809020..1809499) Pediococcus pentosaceus ATCC 25745 4417388 YP_805293.1 CDS PEPE_1832 NC_008525.1 1809999 1813706 R DNA helicase/exodeoxyribonuclease V, subunit A complement(1809999..1813706) Pediococcus pentosaceus ATCC 25745 4417389 YP_805294.1 CDS PEPE_1833 NC_008525.1 1813696 1817274 R DNA helicase/exodeoxyribonuclease V, subunit B complement(1813696..1817274) Pediococcus pentosaceus ATCC 25745 4417390 YP_805295.1 CDS PEPE_1834 NC_008525.1 1817283 1817825 R saccharopine dehydrogenase related protein complement(1817283..1817825) Pediococcus pentosaceus ATCC 25745 4417391 YP_805296.1 CDS PEPE_1835 NC_008525.1 1818151 1819476 D xanthine/uracil permease 1818151..1819476 Pediococcus pentosaceus ATCC 25745 4417392 YP_805297.1 CDS PEPE_1836 NC_008525.1 1819570 1820136 D DNA-3-methyladenine glycosylase I 1819570..1820136 Pediococcus pentosaceus ATCC 25745 4417393 YP_805298.1 CDS PEPE_1837 NC_008525.1 1820156 1821130 D lysophospholipase L1 related esterase 1820156..1821130 Pediococcus pentosaceus ATCC 25745 4417366 YP_805299.1 CDS PEPE_1838 NC_008525.1 1821155 1822522 R Na+/H+ antiporter complement(1821155..1822522) Pediococcus pentosaceus ATCC 25745 4417367 YP_805300.1 CDS PEPE_1839 NC_008525.1 1822843 1824306 R cardiolipin synthetase 2 complement(1822843..1824306) Pediococcus pentosaceus ATCC 25745 4417368 YP_805301.1 CDS PEPE_1840 NC_008525.1 1824670 1825068 R diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases complement(1824670..1825068) Pediococcus pentosaceus ATCC 25745 4417369 YP_805302.1 CDS PEPE_1841 NC_008525.1 1825199 1825777 R Signal peptidase I complement(1825199..1825777) Pediococcus pentosaceus ATCC 25745 4417370 YP_805303.1 CDS PEPE_1842 NC_008525.1 1825969 1826724 R hypothetical protein complement(1825969..1826724) Pediococcus pentosaceus ATCC 25745 4417371 YP_805304.1 CDS PEPE_1843 NC_008525.1 1826849 1828762 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(1826849..1828762) Pediococcus pentosaceus ATCC 25745 4417372 YP_805305.1 CDS trmE NC_008525.1 1828780 1830174 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(1828780..1830174) Pediococcus pentosaceus ATCC 25745 4417373 YP_805306.1 CDS PEPE_1845 NC_008525.1 1830462 1831301 R preprotein translocase subunit YidC complement(1830462..1831301) Pediococcus pentosaceus ATCC 25745 4417374 YP_805307.1 CDS PEPE_1846 NC_008525.1 1831301 1831660 R RNase P protein component complement(1831301..1831660) Pediococcus pentosaceus ATCC 25745 4417375 YP_805308.1 CDS rpmH NC_008525.1 1831772 1831906 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1831772..1831906) Pediococcus pentosaceus ATCC 25745 4417376 PEPE_t0098 tRNA PEPE_t0098 NC_008525.1 107547 107619 R tRNA-Ala complement(107547..107619) Pediococcus pentosaceus ATCC 25745 4418782 PEPE_t0239 tRNA PEPE_t0239 NC_008525.1 282936 283009 D tRNA-Thr 282936..283009 Pediococcus pentosaceus ATCC 25745 4418582 PEPE_t0456 tRNA PEPE_t0456 NC_008525.1 509466 509537 R tRNA-Arg complement(509466..509537) Pediococcus pentosaceus ATCC 25745 4418353 PEPE_t0594 tRNA PEPE_t0594 NC_008525.1 649284 649357 R tRNA-Arg complement(649284..649357) Pediococcus pentosaceus ATCC 25745 4418215 PEPE_t0616 tRNA PEPE_t0616 NC_008525.1 673294 673368 D tRNA-Ile 673294..673368 Pediococcus pentosaceus ATCC 25745 4418207 PEPE_t0617 tRNA PEPE_t0617 NC_008525.1 673374 673446 D tRNA-Ala 673374..673446 Pediococcus pentosaceus ATCC 25745 4418208 PEPE_t0620 tRNA PEPE_t0620 NC_008525.1 676774 676846 D tRNA-Val 676774..676846 Pediococcus pentosaceus ATCC 25745 4418190 PEPE_t0621 tRNA PEPE_t0621 NC_008525.1 676856 676928 D tRNA-Lys 676856..676928 Pediococcus pentosaceus ATCC 25745 4418191 PEPE_t0622 tRNA PEPE_t0622 NC_008525.1 676988 677060 D tRNA-Thr 676988..677060 Pediococcus pentosaceus ATCC 25745 4418192 PEPE_t0623 tRNA PEPE_t0623 NC_008525.1 677071 677142 D tRNA-Gly 677071..677142 Pediococcus pentosaceus ATCC 25745 4418193 PEPE_t0624 tRNA PEPE_t0624 NC_008525.1 677175 677260 D tRNA-Leu 677175..677260 Pediococcus pentosaceus ATCC 25745 4418194 PEPE_t0625 tRNA PEPE_t0625 NC_008525.1 677269 677342 D tRNA-Arg 677269..677342 Pediococcus pentosaceus ATCC 25745 4418195 PEPE_t0626 tRNA PEPE_t0626 NC_008525.1 677352 677425 D tRNA-Pro 677352..677425 Pediococcus pentosaceus ATCC 25745 4418196 PEPE_t0627 tRNA PEPE_t0627 NC_008525.1 677465 677538 D tRNA-Met 677465..677538 Pediococcus pentosaceus ATCC 25745 4418197 PEPE_t0628 tRNA PEPE_t0628 NC_008525.1 677559 677632 D tRNA-Met 677559..677632 Pediococcus pentosaceus ATCC 25745 4418181 PEPE_t0629 tRNA PEPE_t0629 NC_008525.1 677679 677768 D tRNA-Ser 677679..677768 Pediococcus pentosaceus ATCC 25745 4418182 PEPE_t0630 tRNA PEPE_t0630 NC_008525.1 677778 677851 D tRNA-Met 677778..677851 Pediococcus pentosaceus ATCC 25745 4418183 PEPE_t0631 tRNA PEPE_t0631 NC_008525.1 677856 677929 D tRNA-Asp 677856..677929 Pediococcus pentosaceus ATCC 25745 4418184 PEPE_t0632 tRNA PEPE_t0632 NC_008525.1 677935 678007 D tRNA-Phe 677935..678007 Pediococcus pentosaceus ATCC 25745 4418185 PEPE_t0633 tRNA PEPE_t0633 NC_008525.1 678032 678102 D tRNA-Gly 678032..678102 Pediococcus pentosaceus ATCC 25745 4418186 PEPE_t0634 tRNA PEPE_t0634 NC_008525.1 678121 678195 D tRNA-Ile 678121..678195 Pediococcus pentosaceus ATCC 25745 4418187 PEPE_t0635 tRNA PEPE_t0635 NC_008525.1 678199 678286 D tRNA-Ser 678199..678286 Pediococcus pentosaceus ATCC 25745 4418188 PEPE_t0636 tRNA PEPE_t0636 NC_008525.1 678310 678384 D tRNA-Glu 678310..678384 Pediococcus pentosaceus ATCC 25745 4418189 PEPE_t0637 tRNA PEPE_t0637 NC_008525.1 678415 678488 D tRNA-Met 678415..678488 Pediococcus pentosaceus ATCC 25745 4418523 PEPE_t0638 tRNA PEPE_t0638 NC_008525.1 678493 678566 D tRNA-Asp 678493..678566 Pediococcus pentosaceus ATCC 25745 4418524 PEPE_t0656 tRNA PEPE_t0656 NC_008525.1 695336 695419 D tRNA-Leu 695336..695419 Pediococcus pentosaceus ATCC 25745 4418154 PEPE_t0665 tRNA PEPE_t0665 NC_008525.1 705141 705214 D tRNA-Gly 705141..705214 Pediococcus pentosaceus ATCC 25745 4418163 PEPE_t0808 tRNA PEPE_t0808 NC_008525.1 818739 818812 R tRNA-Arg complement(818739..818812) Pediococcus pentosaceus ATCC 25745 4417994 PEPE_t1128 tRNA PEPE_t1128 NC_008525.1 1127365 1127452 D tRNA-Ser 1127365..1127452 Pediococcus pentosaceus ATCC 25745 4417097 PEPE_t1211 tRNA PEPE_t1211 NC_008525.1 1209541 1209611 R tRNA-Cys complement(1209541..1209611) Pediococcus pentosaceus ATCC 25745 4417592 PEPE_t1212 tRNA PEPE_t1212 NC_008525.1 1209696 1209779 R tRNA-Leu complement(1209696..1209779) Pediococcus pentosaceus ATCC 25745 4417593 PEPE_t1213 tRNA PEPE_t1213 NC_008525.1 1209827 1209899 R tRNA-His complement(1209827..1209899) Pediococcus pentosaceus ATCC 25745 4417594 PEPE_t1214 tRNA PEPE_t1214 NC_008525.1 1209905 1209978 R tRNA-Trp complement(1209905..1209978) Pediococcus pentosaceus ATCC 25745 4417595 PEPE_t1215 tRNA PEPE_t1215 NC_008525.1 1210023 1210095 R tRNA-Phe complement(1210023..1210095) Pediococcus pentosaceus ATCC 25745 4417596 PEPE_t1216 tRNA PEPE_t1216 NC_008525.1 1210118 1210191 R tRNA-Asp complement(1210118..1210191) Pediococcus pentosaceus ATCC 25745 4417597 PEPE_t1217 tRNA PEPE_t1217 NC_008525.1 1210210 1210282 R tRNA-Val complement(1210210..1210282) Pediococcus pentosaceus ATCC 25745 4417791 PEPE_t1218 tRNA PEPE_t1218 NC_008525.1 1210290 1210361 R tRNA-Glu complement(1210290..1210361) Pediococcus pentosaceus ATCC 25745 4417792 PEPE_t1219 tRNA PEPE_t1219 NC_008525.1 1210380 1210471 R tRNA-Ser complement(1210380..1210471) Pediococcus pentosaceus ATCC 25745 4417793 PEPE_t1220 tRNA PEPE_t1220 NC_008525.1 1210484 1210556 R tRNA-Asn complement(1210484..1210556) Pediococcus pentosaceus ATCC 25745 4417794 PEPE_t1341 tRNA PEPE_t1341 NC_008525.1 1330717 1330789 D tRNA-Glu 1330717..1330789 Pediococcus pentosaceus ATCC 25745 4417914 PEPE_t1342 tRNA PEPE_t1342 NC_008525.1 1330798 1330873 D tRNA-Gln 1330798..1330873 Pediococcus pentosaceus ATCC 25745 4417915 PEPE_t1429 tRNA PEPE_t1429 NC_008525.1 1409267 1409340 R tRNA-Pro complement(1409267..1409340) Pediococcus pentosaceus ATCC 25745 4417298 PEPE_t1430 tRNA PEPE_t1430 NC_008525.1 1409431 1409504 R tRNA-Arg complement(1409431..1409504) Pediococcus pentosaceus ATCC 25745 4417299 PEPE_t1431 tRNA PEPE_t1431 NC_008525.1 1409526 1409597 R tRNA-Gly complement(1409526..1409597) Pediococcus pentosaceus ATCC 25745 4417300 PEPE_t1432 tRNA PEPE_t1432 NC_008525.1 1409602 1409674 R tRNA-Thr complement(1409602..1409674) Pediococcus pentosaceus ATCC 25745 4417301 PEPE_t1433 tRNA PEPE_t1433 NC_008525.1 1409687 1409768 R tRNA-Leu complement(1409687..1409768) Pediococcus pentosaceus ATCC 25745 4417302 PEPE_t1434 tRNA PEPE_t1434 NC_008525.1 1409811 1409883 R tRNA-Val complement(1409811..1409883) Pediococcus pentosaceus ATCC 25745 4417303 PEPE_t1519 tRNA PEPE_t1519 NC_008525.1 1487116 1487204 R tRNA-Leu complement(1487116..1487204) Pediococcus pentosaceus ATCC 25745 4417211 PEPE_t1530 tRNA PEPE_t1530 NC_008525.1 1499426 1499497 R tRNA-Gln complement(1499426..1499497) Pediococcus pentosaceus ATCC 25745 4417222 PEPE_t1531 tRNA PEPE_t1531 NC_008525.1 1499501 1499586 R tRNA-Tyr complement(1499501..1499586) Pediococcus pentosaceus ATCC 25745 4417223 PEPE_t1535 tRNA PEPE_t1535 NC_008525.1 1502655 1502727 R tRNA-Thr complement(1502655..1502727) Pediococcus pentosaceus ATCC 25745 4417244 PEPE_t1536 tRNA PEPE_t1536 NC_008525.1 1502776 1502848 R tRNA-Asn complement(1502776..1502848) Pediococcus pentosaceus ATCC 25745 4417245 PEPE_t1539 tRNA PEPE_t1539 NC_008525.1 1506176 1506248 R tRNA-Ala complement(1506176..1506248) Pediococcus pentosaceus ATCC 25745 4417248 PEPE_t1540 tRNA PEPE_t1540 NC_008525.1 1506254 1506328 R tRNA-Ile complement(1506254..1506328) Pediococcus pentosaceus ATCC 25745 4417249 PEPE_t1798 tRNA PEPE_t1798 NC_008525.1 1777594 1777669 D tRNA-Lys 1777594..1777669 Pediococcus pentosaceus ATCC 25745 4417344 PEPE_r0108 rRNA PEPE_r0108 NC_008525.1 116896 118475 D 16S ribosomal RNA 116896..118475 Pediococcus pentosaceus ATCC 25745 4418792 PEPE_r0109 rRNA PEPE_r0109 NC_008525.1 118704 121626 D 23S ribosomal RNA 118704..121626 Pediococcus pentosaceus ATCC 25745 4418743 PEPE_r0110 rRNA PEPE_r0110 NC_008525.1 121720 121836 D 5S ribosomal RNA 121720..121836 Pediococcus pentosaceus ATCC 25745 4418744 PEPE_r0236 rRNA PEPE_r0236 NC_008525.1 277878 279458 D 16S ribosomal RNA 277878..279458 Pediococcus pentosaceus ATCC 25745 4418579 PEPE_r0237 rRNA PEPE_r0237 NC_008525.1 279687 282609 D 23S ribosomal RNA 279687..282609 Pediococcus pentosaceus ATCC 25745 4418580 PEPE_r0238 rRNA PEPE_r0238 NC_008525.1 282703 282819 D 5S ribosomal RNA 282703..282819 Pediococcus pentosaceus ATCC 25745 4418581 PEPE_r0615 rRNA PEPE_r0615 NC_008525.1 671638 673217 D 16S ribosomal RNA 671638..673217 Pediococcus pentosaceus ATCC 25745 4418206 PEPE_r0618 rRNA PEPE_r0618 NC_008525.1 673635 676557 D 23S ribosomal RNA 673635..676557 Pediococcus pentosaceus ATCC 25745 4418209 PEPE_r0619 rRNA PEPE_r0619 NC_008525.1 676652 676768 D 5S ribosomal RNA 676652..676768 Pediococcus pentosaceus ATCC 25745 4418210 PEPE_r0935 rRNA PEPE_r0935 NC_008525.1 936650 936983 D RNA_RNaseP_classB 936650..936983 Pediococcus pentosaceus ATCC 25745 4417747 PEPE_r1221 rRNA PEPE_r1221 NC_008525.1 1210562 1210679 R 5S ribosomal RNA complement(1210562..1210679) Pediococcus pentosaceus ATCC 25745 4417795 PEPE_r1222 rRNA PEPE_r1222 NC_008525.1 1210773 1213695 R 23S ribosomal RNA complement(1210773..1213695) Pediococcus pentosaceus ATCC 25745 4417796 PEPE_r1223 rRNA PEPE_r1223 NC_008525.1 1213924 1215503 R 16S ribosomal RNA complement(1213924..1215503) Pediococcus pentosaceus ATCC 25745 4417797 PEPE_r1537 rRNA PEPE_r1537 NC_008525.1 1502854 1502971 R 5S ribosomal RNA complement(1502854..1502971) Pediococcus pentosaceus ATCC 25745 4417246 PEPE_r1538 rRNA PEPE_r1538 NC_008525.1 1503065 1505987 R 23S ribosomal RNA complement(1503065..1505987) Pediococcus pentosaceus ATCC 25745 4417247 PEPE_r1541 rRNA PEPE_r1541 NC_008525.1 1506405 1507984 R 16S ribosomal RNA complement(1506405..1507984) Pediococcus pentosaceus ATCC 25745 4417250