-- dump date 20140619_232646 -- class Genbank::CDS -- table cds_note -- id note YP_003090289.1 PFAM: PDZ domain (Also known as DHR or GLGF) YP_003090292.1 PFAM: 'Cold-shock' DNA-binding domain YP_003090293.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_003090295.1 PFAM: Uncharacterized protein family UPF0054; TIGRFAM: hypothetical protein TIGR00043 YP_003090296.1 PFAM: ABC transporter YP_003090297.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003090298.1 PFAM: Iron Transport-associated domain YP_003090299.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_003090300.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein C-terminal domain; FAD binding domain; TIGRFAM: L-aspartate oxidase YP_003090301.1 PFAM: Quinolinate synthetase A protein; TIGRFAM: quinolinate synthetase complex, A subunit YP_003090302.1 PFAM: AIR synthase related protein, C-terminal domain; AIR synthase related protein, N-terminal domain; TIGRFAM: thiamine-monophosphate kinase YP_003090303.1 PFAM: RmuC family YP_003090304.1 PFAM: neutral zinc metallopeptidase YP_003090305.1 protein associated with Co2+ and Mg2+ efflux YP_003090306.1 PFAM: Dihydrouridine synthase (Dus); TIGRFAM: TIM-barrel protein, nifR3 family YP_003090307.1 PFAM: CAAX amino terminal protease family YP_003090308.1 PFAM: Cytidylyltransferase family YP_003090310.1 PFAM: DEAD/DEAH box helicase; TRCF domain; Helicase conserved C-terminal domain; CarD-like/TRCF domain; TIGRFAM: transcription-repair coupling factor (mfd) YP_003090312.1 PFAM: TM2 domain YP_003090313.1 PFAM: NIF3 (NGG1p interacting factor 3); TIGRFAM: hypothetical protein TIGR00486 YP_003090314.1 PFAM: zinc ribbon domain YP_003090315.1 PFAM: Tetratricopeptide repeat YP_003090316.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_003090317.1 PFAM: Uncharacterised ACR, YkgG family COG1556 YP_003090318.1 PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH YP_003090319.1 PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-related protein YP_003090320.1 PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region YP_003090321.1 PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_003090322.1 PFAM: Domain of unknown function DUF74 YP_003090323.1 PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16 YP_003090324.1 PFAM: PRC-barrel domain; TIGRFAM: 16S rRNA processing protein RimM YP_003090325.1 PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase YP_003090328.1 PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type YP_003090329.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase YP_003090330.1 PFAM: Mechanosensitive ion channel YP_003090331.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_003090332.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase YP_003090333.1 PFAM: Transglycosylase YP_003090334.1 PFAM: Domain of unknown function DUF59; ParA/MinD ATPase like YP_003090335.1 PFAM: NifU-like domain YP_003090337.1 PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase YP_003090338.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_003090339.1 molecular chaperone YP_003090340.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2166) YP_003090342.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003090344.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16); TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003090345.1 PFAM: RagB, SusD and hypothetical proteins YP_003090346.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090347.1 PFAM: FecR protein YP_003090348.1 PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003090349.1 PFAM: Redoxin YP_003090351.1 TIGRFAM: uncharacterized proteobacterial lipoprotein YP_003090354.1 PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein YP_003090355.1 PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein YP_003090359.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; LysM domain YP_003090360.1 PFAM: LysM domain; Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase YP_003090361.1 PFAM: O-methyltransferase YP_003090362.1 PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: hypothetical protein TIGR00250 YP_003090364.1 PFAM: PSP1 C-terminal conserved region YP_003090366.1 PFAM: Mur ligase middle domain; Mur ligase family, catalytic domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase YP_003090367.1 PFAM: Zinc carboxypeptidase YP_003090368.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003090370.1 PFAM: LD-carboxypeptidase YP_003090371.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_003090372.1 PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, sugar binding domain YP_003090373.1 PFAM: TROVE domain YP_003090374.1 PFAM: Uncharacterized protein family UPF0027 YP_003090376.1 PFAM: Phospholipase/Carboxylesterase YP_003090377.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA; HAD-superfamily subfamily IIA hydrolase, TIGR01457 YP_003090379.1 PFAM: Acetyltransferase (GNAT) family YP_003090380.1 PFAM: Peptidase family M20/M25/M40 YP_003090383.1 PFAM: Rhodanese-like domain YP_003090385.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain YP_003090387.1 PFAM: Rhomboid family YP_003090389.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_003090390.1 PFAM: Methyltransferase domain YP_003090391.1 PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase YP_003090394.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003090395.1 PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_003090397.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family YP_003090398.1 PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type YP_003090399.1 PFAM: Ribosomal protein S9/S16 YP_003090400.1 PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type YP_003090401.1 PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts YP_003090402.1 PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_003090403.1 Catalyzes the phosphorylation of UMP to UDP YP_003090404.1 PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor YP_003090405.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_003090406.1 PFAM: Major Facilitator Superfamily YP_003090407.1 PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_003090408.1 PFAM: TonB-dependent Receptor Plug Domain; Cna protein B-type domain; TonB dependent receptor YP_003090409.1 TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type YP_003090410.1 PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC YP_003090412.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_003090413.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003090414.1 PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family YP_003090415.1 PFAM: Tetratricopeptide repeat YP_003090416.1 PFAM: Bacterial DNA-binding protein YP_003090417.1 PFAM: Iron-sulfur binding domain of endonuclease III; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase YP_003090418.1 PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb) YP_003090419.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_003090421.1 PFAM: Starch synthase catalytic domain YP_003090422.1 PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; cytidyltransferase-related domain YP_003090423.1 PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase YP_003090424.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003090425.1 PFAM: Membrane protein of unknown function YP_003090427.1 PFAM: Uncharacterised BCR, YhbC family COG0779 YP_003090428.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_003090429.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_003090431.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003090434.1 PFAM: Glycosyl transferase family 11 YP_003090435.1 PFAM: Glycosyl transferase family 2 YP_003090436.1 PFAM: Glycosyl transferases group 1 YP_003090439.1 PFAM: Glycosyl transferases group 1 YP_003090440.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_003090441.1 PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase YP_003090442.1 PFAM: Thrombospondin type 3 repeat; OmpA family YP_003090444.1 PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP YP_003090445.1 PFAM: Integral membrane protein DUF6; TIGRFAM: rarD protein YP_003090446.1 catalyzes branch migration in Holliday junction intermediates YP_003090447.1 PFAM: Beta-lactamase YP_003090448.1 PFAM: Fumarase C C-terminus; Lyase; TIGRFAM: fumarate hydratase, class II YP_003090450.1 PFAM: S1/P1 Nuclease YP_003090451.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase YP_003090454.1 PFAM: PDZ domain (Also known as DHR or GLGF); Peptidase family S41; TIGRFAM: C-terminal peptidase (prc) YP_003090455.1 PFAM: SPFH domain / Band 7 family YP_003090457.1 PFAM: Bacterial capsule synthesis protein PGA_cap YP_003090458.1 PFAM: NlpC/P60 family YP_003090459.1 PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit YP_003090460.1 PFAM: e3 binding domain; Biotin-requiring enzyme; 2-oxoacid dehydrogenases acyltransferase (catalytic domain); TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form YP_003090461.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003090462.1 PFAM: Response regulator receiver domain YP_003090464.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090465.1 PFAM: alpha/beta hydrolase fold YP_003090466.1 PFAM: Protein of unknown function (DUF980) YP_003090467.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003090469.1 PFAM: Rickettsia 17 kDa surface antigen; OmpA family YP_003090470.1 PFAM: ABC transporter YP_003090472.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_003090473.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003090475.1 PFAM: von Willebrand factor A domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003090476.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003090477.1 TIGRFAM: TonB family C-terminal domain YP_003090478.1 PFAM: Phosphate transporter family YP_003090479.1 PFAM: Protein of unknown function DUF47; TIGRFAM: hypothetical protein TIGR00153 YP_003090480.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003090482.1 PFAM: Radical SAM superfamily YP_003090483.1 PFAM: HD domain YP_003090484.1 PFAM: RNA methylase family UPF0020 YP_003090487.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor YP_003090488.1 PFAM: PepSY-associated TM helix YP_003090490.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003090491.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003090492.1 PFAM: Protein of unknown function (Porph_ging) YP_003090496.1 PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase YP_003090497.1 PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family YP_003090498.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_003090499.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_003090500.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003090501.1 PFAM: BlaR1 peptidase M56; TonB-dependent Receptor Plug Domain; Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_003090502.1 PFAM: Penicillinase repressor YP_003090504.1 PFAM: Histidine kinase YP_003090505.1 PFAM: LytTr DNA-binding domain; Response regulator receiver domain YP_003090506.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_003090507.1 PFAM: NUDIX domain YP_003090508.1 PFAM: TonB-dependent Receptor Plug Domain YP_003090509.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003090510.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS YP_003090511.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_003090512.1 PFAM: short chain dehydrogenase YP_003090513.1 PFAM: Enoyl-CoA hydratase/isomerase family YP_003090514.1 PFAM: TonB-dependent Receptor Plug Domain YP_003090515.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_003090516.1 PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain YP_003090517.1 PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B YP_003090520.1 PFAM: RDD family YP_003090521.1 PFAM: Integral membrane protein DUF95 YP_003090525.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_003090526.1 PFAM: Protein of unknown function DUF58 YP_003090527.1 PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form YP_003090528.1 PFAM: MgtC family YP_003090530.1 PFAM: PKD domain YP_003090531.1 PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL YP_003090532.1 PFAM: Chaperonin 10 Kd subunit YP_003090533.1 PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit YP_003090536.1 PFAM: Sigma-54 interaction domain YP_003090537.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_003090539.1 PFAM: WxcM-like, C-terminal YP_003090541.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003090542.1 PFAM: FecR protein YP_003090543.1 PFAM: PEGA domain; TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090547.1 PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II YP_003090548.1 PFAM: Tryptophan 2,3-dioxygenase YP_003090549.1 PFAM: ACT domain; TIGRFAM: Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like YP_003090550.1 PFAM: NAD dependent epimerase/dehydratase family YP_003090551.1 PFAM: Arginase family YP_003090552.1 PFAM: AhpC/TSA family YP_003090554.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_003090555.1 PFAM: hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein YP_003090556.1 PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_003090558.1 PFAM: SEC-C motif; SecA Wing and Scaffold domain; SecA DEAD-like domain; Helicase conserved C-terminal domain; TIGRFAM: preprotein translocase, SecA subunit YP_003090559.1 PFAM: Sporulation related domain YP_003090560.1 PFAM: Peptidase family M20/M25/M40; TIGRFAM: amidohydrolase YP_003090562.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003090563.1 PFAM: Toprim domain; DNA primase catalytic core, N-terminal domain; CHC2 zinc finger; TIGRFAM: DNA primase, catalytic core YP_003090564.1 PFAM: Uncharacterised protein family UPF0102 YP_003090565.1 PFAM: Glutamine cyclotransferase YP_003090567.1 PFAM: Phosphoglucose isomerase YP_003090569.1 PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2 YP_003090570.1 PFAM: Phospholipase/Carboxylesterase YP_003090574.1 PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase YP_003090575.1 PFAM: Cytochrome c YP_003090577.1 PFAM: Polysulphide reductase, NrfD YP_003090581.1 PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain YP_003090582.1 PFAM: Cytochrome C and Quinol oxidase polypeptide I YP_003090583.1 PFAM: Cytochrome oxidase assembly protein YP_003090584.1 PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase YP_003090586.1 PFAM: Cytochrome c oxidase subunit III YP_003090587.1 TIGRFAM: caa(3)-type oxidase, subunit IV YP_003090588.1 PFAM: SCO1/SenC YP_003090589.1 PFAM: Protein of unknown function (DUF420) YP_003090590.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003090591.1 PFAM: FecR protein YP_003090592.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090596.1 PFAM: Major Facilitator Superfamily YP_003090597.1 PFAM: DJ-1/PfpI family YP_003090598.1 PFAM: NAD dependent epimerase/dehydratase family YP_003090599.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003090600.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_003090601.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2086) YP_003090602.1 PFAM: Protein of unknown function (DUF1349) YP_003090603.1 PFAM: SnoaL-like polyketide cyclase YP_003090604.1 PFAM: 8-oxoguanine DNA glycosylase, N-terminal domain; HhH-GPD superfamily base excision DNA repair protein YP_003090605.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH); Uncharacterized protein conserved in bacteria (DUF2086) YP_003090607.1 PFAM: HEAT repeat YP_003090610.1 PFAM: hypothetical protein (DUF2461); TIGRFAM: hypothetical protein TIGR02453 YP_003090611.1 PFAM: OmpA family YP_003090612.1 PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003090613.1 PFAM: FecR protein YP_003090614.1 PFAM: TonB dependent receptor; Secretin and TonB N terminus short domain; TonB-dependent Receptor Plug Domain YP_003090616.1 PFAM: FG-GAP repeat YP_003090617.1 PFAM: Heparinase II/III-like protein YP_003090618.1 TIGRFAM: membrane-bound dehydrogenase domain YP_003090619.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090620.1 PFAM: Endoribonuclease L-PSP YP_003090621.1 PFAM: Copper binding proteins, plastocyanin/azurin family YP_003090623.1 PFAM: Amidohydrolase YP_003090624.1 PFAM: Amidohydrolase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090625.1 PFAM: Amidohydrolase YP_003090626.1 PFAM: Amidohydrolase YP_003090627.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090629.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090630.1 PFAM: RagB, SusD and hypothetical proteins YP_003090635.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003090636.1 PFAM: Sodium:solute symporter family YP_003090638.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003090640.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090642.1 PFAM: Amidohydrolase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090644.1 TIGRFAM: membrane-bound dehydrogenase domain YP_003090645.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090646.1 PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_003090647.1 PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase YP_003090649.1 PFAM: Tetratricopeptide repeat YP_003090650.1 PFAM: PAS fold; TIGRFAM: PAS domain S-box YP_003090651.1 PFAM: Prolyl oligopeptidase family YP_003090652.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003090653.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003090655.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090660.1 PFAM: Fasciclin domain YP_003090662.1 PFAM: Protein of unknown function (DUF1800) YP_003090663.1 PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090664.1 PFAM: Domain of unknown function (DUF323) YP_003090665.1 PFAM: short chain dehydrogenase YP_003090666.1 PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase YP_003090668.1 PFAM: Uroporphyrinogen-III synthase HemD YP_003090669.1 PFAM: Domain of unknown function (DUF323) YP_003090673.1 PFAM: UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit YP_003090674.1 PFAM: Transglycosylase; Penicillin binding protein transpeptidase domain YP_003090675.1 TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003090678.1 PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_003090679.1 PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c YP_003090680.1 PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b YP_003090681.1 PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit YP_003090682.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003090683.1 PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit YP_003090686.1 PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC YP_003090688.1 PFAM: Glycosyl transferase family 2 YP_003090689.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_003090690.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_003090691.1 PFAM: Glycosyl transferases group 1 YP_003090692.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_003090693.1 PFAM: 2-phosphosulpholactate phosphatase; TIGRFAM: 2-phosphosulfolactate phosphatase YP_003090694.1 PFAM: Patatin-like phospholipase YP_003090697.1 PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase YP_003090698.1 PFAM: Carbon-nitrogen hydrolase; TIGRFAM: apolipoprotein N-acyltransferase YP_003090700.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: hypothetical protein TIGR00096 YP_003090701.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003090703.1 PFAM: Protein of unknown function (DUF541) YP_003090704.1 PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase YP_003090706.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_003090707.1 PFAM: NADPH-dependent FMN reductase YP_003090708.1 PFAM: Alanine racemase, N-terminal domain YP_003090710.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003090712.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_003090714.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_003090715.1 PFAM: UbiA prenyltransferase family YP_003090716.1 PFAM: TatD related DNase YP_003090719.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_003090720.1 PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2 YP_003090724.1 PFAM: Insulinase (Peptidase family M16); Peptidase M16 inactive domain YP_003090726.1 PFAM: RagB, SusD and hypothetical proteins YP_003090727.1 PFAM: TonB dependent receptor; Secretin and TonB N terminus short domain; TonB-dependent Receptor Plug Domain YP_003090728.1 PFAM: FecR protein YP_003090729.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003090731.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090732.1 PFAM: RagB, SusD and hypothetical proteins YP_003090735.1 PFAM: Glycosyl Hydrolase Family 88 YP_003090736.1 PFAM: Cytochrome c YP_003090738.1 PFAM: Glycosyl Hydrolase Family 88 YP_003090740.1 PFAM: Domain of unknown function (DUF756); Phosphoesterase family; TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type YP_003090741.1 PFAM: OsmC-like protein YP_003090742.1 PFAM: Major Facilitator Superfamily YP_003090743.1 PFAM: FAD dependent oxidoreductase YP_003090744.1 PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003090745.1 PFAM: Recombination protein O; TIGRFAM: DNA repair protein RecO YP_003090746.1 PFAM: Prokaryotic diacylglycerol kinase YP_003090747.1 PFAM: Protein of unknown function (DUF890) YP_003090748.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2130) YP_003090749.1 PFAM: Iron dependent repressor, metal binding and dimerisation domain; FeoA domain; Iron dependent repressor, N-terminal DNA binding domain YP_003090750.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090753.1 PFAM: Transcriptional regulator PadR-like family YP_003090754.1 PFAM: PspC domain YP_003090756.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_003090757.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003090759.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_003090760.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090761.1 PFAM: Pterin 4 alpha carbinolamine dehydratase YP_003090762.1 PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase YP_003090763.1 PFAM: 2OG-Fe(II) oxygenase superfamily YP_003090764.1 PFAM: ABC transporter YP_003090765.1 PFAM: Beta-lactamase YP_003090766.1 PFAM: Amidohydrolase family YP_003090767.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, C-terminal domain; MutL C terminal dimerisation domain; TIGRFAM: DNA mismatch repair protein MutL YP_003090768.1 PFAM: Rhomboid family YP_003090769.1 PFAM: Rhomboid family YP_003090770.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003090771.1 PFAM: DALR domain; tRNA synthetases class I (C) catalytic domain; TIGRFAM: cysteinyl-tRNA synthetase YP_003090773.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_003090774.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_003090775.1 PFAM: SurA N-terminal domain; PPIC-type PPIASE domain YP_003090778.1 PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family YP_003090780.1 PFAM: PP-loop family; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain YP_003090782.1 PFAM: Glycosyl transferases group 1 YP_003090783.1 PFAM: Domain of unknown function (DUF2394) YP_003090784.1 PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family YP_003090785.1 PFAM: Transglycosylase SLT domain YP_003090787.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090788.1 PFAM: RagB, SusD and hypothetical proteins; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003090791.1 PFAM: Two component regulator propeller; Response regulator receiver domain; Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003090793.1 PFAM: Glycosyl hydrolases family 43 YP_003090794.1 PFAM: Oxidoreductase NAD-binding domain; Oxidoreductase FAD-binding domain; 2Fe-2S iron-sulfur cluster binding domain YP_003090795.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_003090796.1 PFAM: Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related YP_003090797.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2337) YP_003090798.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003090799.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003090800.1 PFAM: META domain YP_003090801.1 PFAM: OsmC-like protein YP_003090803.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003090804.1 PFAM: RagB, SusD and hypothetical proteins YP_003090806.1 PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family YP_003090807.1 PFAM: 3-dehydroquinate synthase YP_003090808.1 PFAM: Dihydrodipicolinate synthetase family YP_003090809.1 PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase YP_003090811.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003090813.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_003090814.1 PFAM: AhpC/TSA family YP_003090815.1 PFAM: DSBA-like thioredoxin domain YP_003090816.1 PFAM: 'Cold-shock' DNA-binding domain YP_003090817.1 PFAM: Sir2 family YP_003090819.1 PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat YP_003090820.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein YP_003090821.1 PFAM: Protein of unknown function (DUF721) YP_003090823.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase YP_003090824.1 PFAM: Nucleoside diphosphate kinase YP_003090825.1 PFAM: DHH family; DHHA1 domain YP_003090826.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003090827.1 PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family YP_003090828.1 PFAM: Asparaginase; TIGRFAM: L-asparaginases, type I YP_003090829.1 PFAM: Metallo-beta-lactamase superfamily YP_003090831.1 PFAM: Polyprenyl synthetase YP_003090832.1 PFAM: Transcription termination factor nusG YP_003090835.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003090836.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_003090837.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain YP_003090840.1 PFAM: Lanthionine synthetase C-like protein YP_003090841.1 PFAM: Lantibiotic dehydratase, C terminus; Lantibiotic dehydratase, N terminus YP_003090843.1 PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family YP_003090845.1 PFAM: Glycosyl transferase family 2 YP_003090848.1 PFAM: Domain of unknown function (DUF1735) YP_003090849.1 PFAM: RagB, SusD and hypothetical proteins YP_003090850.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090851.1 PFAM: IPT/TIG domain; NHL repeat YP_003090852.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003090853.1 PFAM: FAD dependent oxidoreductase YP_003090854.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090858.1 PFAM: Calcineurin-like phosphoesterase YP_003090860.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_003090861.1 PFAM: Major Facilitator Superfamily; TIGRFAM: phosphoglycerate transporter family protein; glycerol-3-phosphate transporter YP_003090862.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003090863.1 PFAM: Fatty acid desaturase YP_003090864.1 PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit YP_003090866.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_003090867.1 PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form YP_003090868.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_003090869.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_003090870.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_003090871.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; CHASE3 domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_003090872.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003090873.1 PFAM: Histidine kinase YP_003090874.1 PFAM: ArsC family; TIGRFAM: hypothetical protein YP_003090877.1 PFAM: Uncharacterized conserved protein (DUF2132) YP_003090878.1 PFAM: Lipid A 3-O-deacylase (PagL) YP_003090879.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003090880.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_003090881.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003090882.1 PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle YP_003090884.1 PFAM: Domain of unknown function DUF81 YP_003090885.1 PFAM: Protein of unknown function (DUF1634) YP_003090886.1 PFAM: Ribosomal protein L3 YP_003090887.1 PFAM: Ribosomal protein L4/L1 family YP_003090888.1 PFAM: Ribosomal protein L23 YP_003090889.1 PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar YP_003090890.1 PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle YP_003090891.1 PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type YP_003090892.1 PFAM: Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; KH domain; TIGRFAM: ribosomal protein S3, bacterial type YP_003090893.1 PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle YP_003090894.1 PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29 YP_003090895.1 PFAM: Ribosomal protein S17 YP_003090896.1 PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle YP_003090897.1 PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle YP_003090898.1 PFAM: Ribosomal protein L5; ribosomal L5P family C-terminus YP_003090899.1 PFAM: Ribosomal protein S14p/S29e YP_003090900.1 PFAM: Ribosomal protein S8 YP_003090901.1 PFAM: Ribosomal protein L6 YP_003090902.1 PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type YP_003090903.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_003090904.1 PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle YP_003090905.1 PFAM: Ribosomal protein L15 amino terminal region; Ribosomal protein L15; TIGRFAM: ribosomal protein L15, bacterial/organelle YP_003090906.1 PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit YP_003090907.1 PFAM: metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_003090908.1 PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1 YP_003090909.1 PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type YP_003090910.1 PFAM: Ribosomal protein S13/S18 YP_003090911.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_003090912.1 PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type YP_003090913.1 PFAM: Bacterial RNA polymerase, alpha chain C terminal domain; RNA polymerase Rpb3/RpoA insert domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type YP_003090914.1 PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17 YP_003090917.1 PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK YP_003090919.1 PFAM: Bacterial protein of unknown function (DUF853) YP_003090920.1 PFAM: Peptidase family M20/M25/M40 YP_003090921.1 PFAM: Acetyltransferase (GNAT) family YP_003090922.1 PFAM: Major Facilitator Superfamily YP_003090923.1 PFAM: Carboxyl transferase domain YP_003090924.1 PFAM: Phosphate-selective porin O and P YP_003090926.1 PFAM: Sulfate transporter family YP_003090927.1 PFAM: Carbonic anhydrase YP_003090928.1 PFAM: Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase, group 1 YP_003090929.1 PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase YP_003090930.1 PFAM: Phosphorylase superfamily; TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific YP_003090933.1 PFAM: NUDIX domain YP_003090936.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_003090939.1 PFAM: Predicted SPOUT methyltransferase; TIGRFAM: hypothetical protein TIGR00246 YP_003090940.1 PFAM: MutS domain V YP_003090941.1 PFAM: Glycosyl hydrolase family 1; TIGRFAM: beta-galactosidase YP_003090944.1 Catalyzes the conversion of citrate to isocitrate YP_003090945.1 PFAM: Polysaccharide deacetylase YP_003090946.1 PFAM: Outer membrane efflux protein YP_003090947.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003090948.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus YP_003090950.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003090952.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_003090953.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_003090955.1 PFAM: Ykud domain YP_003090958.1 PFAM: OsmC-like protein YP_003090959.1 PFAM: Glycosyl hydrolase family 9; Polysaccharide deacetylase; N-terminal ig-like domain of cellulase YP_003090960.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003090961.1 PFAM: RibD C-terminal domain YP_003090962.1 PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family YP_003090963.1 PFAM: ROK family YP_003090964.1 PFAM: Major Facilitator Superfamily YP_003090966.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003090968.1 PFAM: Bacterial extracellular solute-binding proteins, family 3 YP_003090970.1 PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit YP_003090971.1 PFAM: Glycosyltransferase sugar-binding region containing DXD motif YP_003090972.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_003090973.1 PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; TIGRFAM: rare lipoprotein A YP_003090974.1 PFAM: Ribonucleotide reductase, small chain YP_003090975.1 PFAM: Ribonucleotide reductase, barrel domain; Ribonucleotide reductase, all-alpha domain; ATP cone domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit YP_003090977.1 PFAM: Carbon-nitrogen hydrolase; TIGRFAM: N-carbamoylputrescine amidase YP_003090978.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase YP_003090979.1 PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase YP_003090980.1 PFAM: Ykud domain YP_003090982.1 PFAM: UPF0126 domain YP_003090983.1 PFAM: Septum formation initiator YP_003090985.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_003090986.1 PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins YP_003090987.1 PFAM: ABC-2 type transporter YP_003090988.1 PFAM: ABC transporter YP_003090989.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_003090990.1 PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_003090991.1 PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_003090992.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003090993.1 PFAM: FecR protein YP_003090994.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003090995.1 PFAM: RagB, SusD and hypothetical proteins YP_003090997.1 PFAM: F5/8 type C domain YP_003090998.1 PFAM: Fibronectin type III domain YP_003090999.1 PFAM: He_PIG associated, NEW1 domain of bacterial glycohydrolase; Ig domain YP_003091001.1 PFAM: Glycosyl hydrolases family 28; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091005.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_003091006.1 PFAM: AhpC/TSA family YP_003091007.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003091008.1 PFAM: FecR protein YP_003091009.1 PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain; TonB dependent receptor YP_003091010.1 PFAM: RagB, SusD and hypothetical proteins YP_003091011.1 PFAM: Matrixin YP_003091014.1 PFAM: HPP family YP_003091016.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003091017.1 PFAM: TonB-dependent Receptor Plug Domain YP_003091018.1 PFAM: Monomeric isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, monomeric type YP_003091020.1 PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, subunits gamma and tau YP_003091021.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091023.1 PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6 YP_003091024.1 PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18 YP_003091025.1 PFAM: Ribosomal protein L9, C-terminal domain; Ribosomal protein L9, N-terminal domain; TIGRFAM: ribosomal protein L9 YP_003091026.1 PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase YP_003091029.1 PFAM: Metallo-beta-lactamase superfamily YP_003091030.1 PFAM: Cysteine-rich domain YP_003091037.1 PFAM: Bacterial regulatory proteins, gntR family; UTRA domain YP_003091038.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091039.1 PFAM: RagB, SusD and hypothetical proteins YP_003091040.1 TIGRFAM: mannose-6-phosphate isomerase, class I YP_003091041.1 PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family YP_003091044.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003091045.1 PFAM: Glycosyl hydrolase family 92; F5/8 type C domain; TIGRFAM: alpha-1,2-mannosidase YP_003091046.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091047.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; PEGA domain YP_003091048.1 PFAM: PepSY-associated TM helix YP_003091049.1 PFAM: Calcineurin-like phosphoesterase YP_003091050.1 PFAM: DinB family YP_003091051.1 PFAM: Universal stress protein family YP_003091053.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003091054.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091055.1 PFAM: RagB, SusD and hypothetical proteins YP_003091057.1 PFAM: Protein of unknown function (DUF1800) YP_003091058.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_003091059.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091060.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003091061.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091062.1 PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_003091063.1 PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family YP_003091065.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_003091067.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Y_Y_Y domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_003091068.1 PFAM: Polysaccharide lyase family 8, super-sandwich domain; Lyase, catalytic; Lyase, N terminal YP_003091069.1 PFAM: Sulfatase YP_003091070.1 PFAM: Polysaccharide lyase family 8, super-sandwich domain; Polysaccharide lyase family 8, C-terminal beta-sandwich domain; Polysaccharide lyase family 8, N terminal alpha-helical domain YP_003091071.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091072.1 PFAM: RagB, SusD and hypothetical proteins YP_003091074.1 PFAM: Glycosyl Hydrolase Family 88 YP_003091075.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain YP_003091077.1 PFAM: Response regulator receiver domain YP_003091078.1 PFAM: Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 C terminal domain YP_003091079.1 PFAM: mce related protein YP_003091080.1 PFAM: ABC transporter YP_003091081.1 PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_003091082.1 PFAM: Methyltransferase domain YP_003091084.1 PFAM: Ferritin-like domain YP_003091085.1 PFAM: FemAB family YP_003091086.1 PFAM: Thymidine kinase YP_003091088.1 PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA YP_003091089.1 PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2 YP_003091090.1 TIGRFAM: rod shape-determining protein MreD YP_003091091.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_003091092.1 functions in MreBCD complex in some organisms YP_003091093.1 involved in de novo purine biosynthesis YP_003091094.1 PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_003091098.1 PFAM: Iron/manganese superoxide dismutases, C-terminal domain; Iron/manganese superoxide dismutases, alpha-hairpin domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091100.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor YP_003091101.1 PFAM: PepSY-associated TM helix YP_003091103.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_003091104.1 PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc YP_003091105.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003091106.1 PFAM: Prolipoprotein diacylglyceryl transferase YP_003091107.1 PFAM: Radical SAM superfamily YP_003091109.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003091112.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_003091113.1 PFAM: Protein of unknown function (DUF962) YP_003091114.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent receptor YP_003091118.1 PFAM: Acyltransferase YP_003091119.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_003091120.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase YP_003091121.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003091123.1 PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21 YP_003091124.1 PFAM: Phage integrase family; Phage integrase, N-terminal SAM-like domain YP_003091125.1 PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein YP_003091126.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_003091127.1 PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial YP_003091128.1 PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG YP_003091129.1 PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11 YP_003091130.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_003091131.1 PFAM: Ribosomal protein L10 YP_003091132.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_003091133.1 PFAM: RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 3; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit YP_003091134.1 PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form YP_003091136.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_003091138.1 PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG YP_003091139.1 PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_003091140.1 PFAM: Glycosyl transferases group 1 YP_003091141.1 PFAM: Glycosyl transferases group 1 YP_003091142.1 PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_003091143.1 PFAM: S4 domain YP_003091144.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_003091145.1 PFAM: Outer membrane protein (OmpH-like) YP_003091146.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; Toprim domain; TIGRFAM: DNA gyrase, B subunit YP_003091148.1 PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent YP_003091149.1 PFAM: Lipocalin-like domain YP_003091150.1 PFAM: Exonuclease; Bacterial DNA polymerase III alpha subunit; OB-fold nucleic acid binding domain; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_003091151.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_003091152.1 PFAM: Protein of unknown function DUF58 YP_003091153.1 PFAM: Aminotransferase class-III YP_003091156.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003091157.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_003091158.1 PFAM: Transketolase, thiamine diphosphate binding domain YP_003091159.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003091160.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain YP_003091161.1 PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III YP_003091162.1 PFAM: RibD C-terminal domain YP_003091164.1 PFAM: AhpC/TSA family YP_003091165.1 PFAM: Peptidase family M23 YP_003091166.1 PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_003091168.1 PFAM: K+ potassium transporter YP_003091169.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003091170.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003091171.1 PFAM: Domain of unknown function (DUF323) YP_003091173.1 PFAM: NAD dependent epimerase/dehydratase family YP_003091174.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091178.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003091179.1 PFAM: GIY-YIG catalytic domain YP_003091182.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003091184.1 PFAM: Acetyltransferase (GNAT) family YP_003091186.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003091187.1 PFAM: Fic/DOC family YP_003091188.1 PFAM: FecR protein YP_003091189.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003091190.1 PFAM: RagB, SusD and hypothetical proteins YP_003091191.1 PFAM: Redoxin YP_003091192.1 PFAM: AhpC/TSA family YP_003091198.1 PFAM: Helix-turn-helix YP_003091201.1 PFAM: KilA-N domain YP_003091212.1 PFAM: MazG nucleotide pyrophosphohydrolase domain YP_003091213.1 PFAM: Uncharacterized conserved protein (DUF2075) YP_003091214.1 PFAM: DNA mismatch endonuclease Vsr; TIGRFAM: DNA mismatch endonuclease Vsr YP_003091215.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm) YP_003091216.1 PFAM: C-5 cytosine-specific DNA methylase; TIGRFAM: DNA-methyltransferase (dcm) YP_003091219.1 PFAM: Z1 domain YP_003091220.1 PFAM: Z1 domain YP_003091222.1 PFAM: AIPR protein; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003091224.1 PFAM: Transcriptional regulatory protein, C terminal YP_003091226.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003091228.1 PFAM: Methyltransferase domain YP_003091231.1 PFAM: NADPH-dependent FMN reductase YP_003091232.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003091233.1 PFAM: FecR protein YP_003091234.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091235.1 PFAM: Redoxin YP_003091236.1 PFAM: RagB, SusD and hypothetical proteins YP_003091238.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003091239.1 PFAM: FecR protein YP_003091240.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091241.1 PFAM: RagB, SusD and hypothetical proteins YP_003091243.1 PFAM: Bacterial alpha-L-rhamnosidase YP_003091244.1 PFAM: Glycosyl Hydrolase Family 88 YP_003091248.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain YP_003091249.1 PFAM: Protein of unknown function (DUF718); TIGRFAM: L-rhamnose 1-epimerase YP_003091250.1 PFAM: FAD binding domain YP_003091251.1 PFAM: Domain of unknown function (DUF307) YP_003091253.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2059) YP_003091255.1 PFAM: Beta-lactamase YP_003091257.1 PFAM: Amino acid permease YP_003091258.1 PFAM: Peptidase family M3; TIGRFAM: oligoendopeptidase, M3 family YP_003091259.1 PFAM: UbiA prenyltransferase family; TIGRFAM: 4-hydroxybenzoate polyprenyltransferase YP_003091260.1 PFAM: GTPase of unknown function; TIGRFAM: GTP-binding hypothetical protein YP_003091261.1 PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases YP_003091263.1 PFAM: short chain dehydrogenase YP_003091264.1 PFAM: Yqey-like protein YP_003091265.1 PFAM: alpha/beta hydrolase fold YP_003091266.1 PFAM: CBS domain pair YP_003091267.1 catalyzes the phosphorylation of NAD to NADP YP_003091269.1 PFAM: undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase YP_003091270.1 PFAM: Surface antigen; Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein YP_003091271.1 PFAM: Outer membrane protein (OmpH-like) YP_003091272.1 PFAM: Outer membrane protein (OmpH-like) YP_003091273.1 PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_003091274.1 PFAM: LysE type translocator YP_003091275.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_003091276.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003091278.1 PFAM: NOL1/NOP2/sun family YP_003091279.1 PFAM: MarC family integral membrane protein; TIGRFAM: hypothetical protein TIGR00427 YP_003091280.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091281.1 PFAM: RagB, SusD and hypothetical proteins YP_003091283.1 PFAM: Amino acid permease YP_003091284.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_003091285.1 PFAM: Amino acid permease YP_003091287.1 PFAM: OmpA family YP_003091288.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM protein, TIGR01212 family YP_003091289.1 PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter YP_003091292.1 PFAM: Protein of unknown function (DUF458) YP_003091294.1 PFAM: DbpA RNA binding domain; Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003091295.1 PFAM: Protein of unknown function (DUF1456) YP_003091296.1 TIGRFAM: PAS domain S-box YP_003091297.1 PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family; Bacterial regulatory proteins, lacI family YP_003091298.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091299.1 PFAM: RagB, SusD and hypothetical proteins YP_003091300.1 PFAM: Domain of Unknown Function (DUF1080) YP_003091301.1 PFAM: Xylose isomerase-like TIM barrel YP_003091302.1 PFAM: Xylose isomerase-like TIM barrel YP_003091303.1 PFAM: Xylose isomerase-like TIM barrel YP_003091304.1 PFAM: Domain of Unknown Function (DUF1080); Xylose isomerase-like TIM barrel YP_003091305.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003091306.1 PFAM: Major Facilitator Superfamily YP_003091308.1 PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold YP_003091309.1 PFAM: AraC-like ligand binding domain YP_003091312.1 PFAM: Malate/L-lactate dehydrogenase YP_003091313.1 PFAM: 2OG-Fe(II) oxygenase superfamily YP_003091314.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091318.1 PFAM: TonB-dependent Receptor Plug Domain YP_003091319.1 PFAM: FecR protein YP_003091320.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091321.1 PFAM: Fibronectin type III domain YP_003091323.1 PFAM: Protein of unknown function (DUF1255) YP_003091324.1 PFAM: ROK family YP_003091325.1 PFAM: esterase YP_003091326.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091327.1 PFAM: Bacterial regulatory proteins, luxR family YP_003091329.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003091331.1 TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; YD repeat (two copies) YP_003091332.1 PFAM: RHS Repeat; TIGRFAM: YD repeat (two copies) YP_003091350.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003091351.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003091353.1 PFAM: FecR protein YP_003091354.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003091356.1 PFAM: Redoxin YP_003091358.1 PFAM: AhpC/TSA family YP_003091377.1 TIGRFAM: YD repeat (two copies) YP_003091378.1 TIGRFAM: YD repeat (two copies) YP_003091380.1 PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003091382.1 PFAM: Type II/IV secretion system protein YP_003091383.1 PFAM: Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein YP_003091387.1 TIGRFAM: type IV pilus biogenesis protein PilP YP_003091391.1 TIGRFAM: prepilin-type N-terminal cleavage/methylation domain YP_003091392.1 PFAM: Bacterial type II secretion system protein F domain YP_003091394.1 PFAM: alpha/beta hydrolase fold YP_003091395.1 PFAM: Helix-turn-helix YP_003091397.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003091400.1 PFAM: FecR protein YP_003091401.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003091402.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003091404.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003091405.1 PFAM: RagB, SusD and hypothetical proteins YP_003091406.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091408.1 PFAM: RagB, SusD and hypothetical proteins YP_003091409.1 PFAM: Amidohydrolase YP_003091410.1 PFAM: Domain of Unknown Function (DUF1080) YP_003091411.1 PFAM: Trehalase YP_003091412.1 PFAM: ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain YP_003091413.1 PFAM: Domain of unknown function (DUF323) YP_003091414.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003091415.1 PFAM: ApbE family YP_003091416.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091417.1 PFAM: Radical SAM superfamily YP_003091419.1 PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN YP_003091420.1 PFAM: BlaR1 peptidase M56 YP_003091421.1 PFAM: Penicillinase repressor YP_003091423.1 PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic YP_003091427.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003091428.1 PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family; Bacterial regulatory proteins, lacI family YP_003091429.1 PFAM: Pectinesterase YP_003091430.1 PFAM: Glycosyl hydrolases family 43 YP_003091431.1 PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family YP_003091432.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003091433.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091434.1 PFAM: RagB, SusD and hypothetical proteins YP_003091436.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003091437.1 PFAM: Pectinesterase YP_003091438.1 PFAM: Glycosyl hydrolases family 28 YP_003091439.1 PFAM: Pectic acid lyase (pec_lyase); TIGRFAM: pectate lyase, PelA/Pel-15E family YP_003091440.1 catalyzes the formation of D-tagaturonate from D-altronate YP_003091441.1 PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain YP_003091442.1 PFAM: Glucuronate isomerase YP_003091443.1 PFAM: Fatty acid desaturase YP_003091444.1 PFAM: ArgK protein; B12 binding domain; Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain; methylmalonyl-CoA mutase C-terminal domain YP_003091445.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_003091446.1 PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase YP_003091448.1 PFAM: Biopolymer transport protein ExbD/TolR YP_003091449.1 PFAM: MotA/TolQ/ExbB proton channel family YP_003091450.1 PFAM: Sporulation related domain YP_003091451.1 PFAM: TonB dependent receptor YP_003091452.1 PFAM: Tetratricopeptide repeat YP_003091453.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_003091454.1 PFAM: Phosphoribosyl transferase domain YP_003091455.1 PFAM: Glycosyl hydrolase family 20, catalytic domain YP_003091456.1 PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1 YP_003091458.1 PFAM: AsnC family YP_003091459.1 PFAM: Domain of unknown function (DUF756); Phosphoesterase family; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence; phospholipase C, phosphocholine-specific, Pseudomonas-type YP_003091460.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase YP_003091462.1 PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091464.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091465.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003091466.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_003091467.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_003091468.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003091469.1 PFAM: Bacterial regulatory proteins, tetR family YP_003091470.1 PFAM: Cytidylate kinase; Shikimate kinase; TIGRFAM: cytidylate kinase YP_003091471.1 PFAM: RF-1 domain YP_003091472.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2219) YP_003091473.1 PFAM: ATPase family associated with various cellular activities (AAA); ATP-dependent protease La (LON) domain; Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La YP_003091476.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_003091478.1 PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase YP_003091479.1 PFAM: Domain of unknown function DUF; TIGRFAM: conserved hypothetical integral membrane protein TIGR00023 YP_003091480.1 PFAM: Peptidase family M48 YP_003091481.1 PFAM: chorismate binding enzyme; Anthranilate synthase component I, N terminal region YP_003091482.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_003091483.1 PFAM: Ferric uptake regulator family YP_003091484.1 PFAM: HD domain; TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family YP_003091487.1 PFAM: Glutathione peroxidase YP_003091488.1 PFAM: GlcNAc-PI de-N-acetylase YP_003091489.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain YP_003091491.1 catalyzes the formation of 2-aminoadipate 6-semiladehyde and glutamate from lysine and 2-oxoglutarate YP_003091492.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_003091493.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003091494.1 PFAM: YCII-related domain YP_003091495.1 PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_003091496.1 PFAM: NADPH-dependent FMN reductase YP_003091497.1 PFAM: Pyridoxal-phosphate dependent enzyme YP_003091498.1 PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family YP_003091499.1 PFAM: Aminotransferase class IV YP_003091500.1 PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase YP_003091503.1 PFAM: Protein of unknown function (DUF1343) YP_003091504.1 PFAM: Predicted permease YP_003091505.1 PFAM: 7TM diverse intracellular signalling; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091506.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase YP_003091507.1 PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091508.1 PFAM: DEAD/DEAH box helicase YP_003091509.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_003091511.1 PFAM: Domain of unknown function DUF20 YP_003091512.1 PFAM: Aldo/keto reductase family YP_003091513.1 PFAM: Protein of unknown function (DUF752) YP_003091515.1 PFAM: Peptidase C26 YP_003091516.1 PFAM: Aldehyde dehydrogenase family YP_003091517.1 PFAM: Peptidase family M13; Peptidase family M13 YP_003091518.1 PFAM: Integral membrane protein DUF6 YP_003091519.1 PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region; Prolyl oligopeptidase family YP_003091520.1 PFAM: FecR protein YP_003091521.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003091522.1 PFAM: Anticodon-binding domain; tRNA synthetases class I (I, L, M and V); Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase YP_003091523.1 PFAM: N-acetylmuramoyl-L-alanine amidase YP_003091525.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003091526.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_003091527.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_003091528.1 PFAM: Type I restriction enzyme R protein N terminus (HSDR_N) YP_003091529.1 PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit YP_003091532.1 PFAM: glycosyl hydrolase of unknown function (DUF1680) YP_003091534.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003091536.1 PFAM: Sodium/hydrogen exchanger family YP_003091537.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091538.1 PFAM: RagB, SusD and hypothetical proteins YP_003091539.1 PFAM: Protein of unknown function DUF55 YP_003091540.1 PFAM: Thioesterase superfamily YP_003091541.1 PFAM: Alpha amylase, catalytic domain YP_003091543.1 PFAM: ABC transporter YP_003091544.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_003091546.1 PFAM: RNA 2'-O ribose methyltransferase substrate binding; SpoU rRNA Methylase family YP_003091547.1 PFAM: Surface antigen YP_003091549.1 PFAM: Patatin-like phospholipase YP_003091550.1 PFAM: TspO/MBR family YP_003091552.1 PFAM: PAS fold; PAS fold; TIGRFAM: PAS domain S-box YP_003091554.1 PFAM: DinB family YP_003091555.1 PFAM: FAD dependent oxidoreductase; FAD binding domain YP_003091557.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003091558.1 PFAM: FecR protein YP_003091559.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091560.1 PFAM: RagB, SusD and hypothetical proteins YP_003091562.1 PFAM: Calcineurin-like phosphoesterase YP_003091564.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091565.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003091566.1 PFAM: Glycosyl Hydrolase Family 88 YP_003091567.1 PFAM: short chain dehydrogenase YP_003091568.1 PFAM: Domain of unknown function (DUF303) YP_003091569.1 PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain YP_003091570.1 PFAM: F5/8 type C domain YP_003091571.1 PFAM: Glycosyl hydrolases family 2, TIM barrel domain YP_003091572.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2264) YP_003091573.1 PFAM: Glycosyl Hydrolase Family 88 YP_003091574.1 PFAM: Glycosyl hydrolases family 39 YP_003091575.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003091576.1 PFAM: RagB, SusD and hypothetical proteins YP_003091577.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091578.1 PFAM: RagB, SusD and hypothetical proteins YP_003091581.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091584.1 PFAM: Protein of unknown function (DUF419) YP_003091585.1 PFAM: Protein of unknown function (DUF892) YP_003091587.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091589.1 PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase YP_003091591.1 PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase YP_003091592.1 PFAM: Domain of unknown function (DUF303) YP_003091594.1 PFAM: Y_Y_Y domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091595.1 PFAM: CBS domain pair; Divalent cation transporter; MgtE intracellular N domain; TIGRFAM: Mg2+ transporter (mgtE) YP_003091596.1 PFAM: Subtilase family YP_003091597.1 PFAM: Protein of unknown function (DUF933); GTPase of unknown function; TIGRFAM: GTP-binding hypothetical protein; GTP-binding protein YchF YP_003091599.1 PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003091602.1 PFAM: Redoxin YP_003091603.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003091604.1 PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain YP_003091605.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091606.1 PFAM: Vitamin K-dependent gamma-carboxylase YP_003091607.1 PFAM: Imelysin YP_003091609.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003091610.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091611.1 PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_003091612.1 PFAM: Phenylalanine and histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase YP_003091613.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_003091614.1 PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_003091615.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_003091616.1 PFAM: short chain dehydrogenase YP_003091617.1 PFAM: PAP2 superfamily YP_003091618.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) YP_003091619.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003091620.1 PFAM: Outer membrane efflux protein YP_003091621.1 PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091622.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003091623.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091625.1 PFAM: DnaJ domain YP_003091626.1 PFAM: Uncharacterised BCR, COG1649 YP_003091628.1 PFAM: Cyclic nucleotide-binding domain YP_003091630.1 PFAM: Ftsk gamma domain YP_003091631.1 PFAM: AhpC/TSA family YP_003091633.1 PFAM: Exonuclease YP_003091634.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_003091635.1 PFAM: NHL repeat YP_003091636.1 PFAM: IPT/TIG domain; NHL repeat YP_003091637.1 related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase YP_003091638.1 PFAM: RagB, SusD and hypothetical proteins YP_003091639.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091640.1 PFAM: FecR protein YP_003091641.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003091642.1 PFAM: Thioesterase superfamily; TIGRFAM: hypothetical protein TIGR00051 YP_003091646.1 PFAM: impB/mucB/samB family YP_003091647.1 PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc) YP_003091648.1 PFAM: AsnC family YP_003091649.1 PFAM: Sigma-70 factor, region 1.2; Sigma-70 region 2; Sigma-70 region 3; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003091650.1 PFAM: 2OG-Fe(II) oxygenase superfamily YP_003091651.1 PFAM: Bacterial regulatory proteins, tetR family YP_003091652.1 PFAM: DoxX YP_003091654.1 PFAM: GlcNAc-PI de-N-acetylase YP_003091656.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003091657.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003091658.1 PFAM: FecR protein YP_003091659.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091660.1 PFAM: RagB, SusD and hypothetical proteins YP_003091661.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003091664.1 PFAM: Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2; Xylose isomerase-like TIM barrel YP_003091666.1 PFAM: Peptidase family M1 YP_003091669.1 PFAM: Bacterial Cytochrome Ubiquinol Oxidase YP_003091670.1 PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB) YP_003091671.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_003091673.1 PFAM: Protein of unknown function (DUF2012) YP_003091675.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_003091676.1 PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_003091677.1 PFAM: NusB family YP_003091678.1 PFAM: Protein of unknown function (DUF1573) YP_003091679.1 PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit YP_003091680.1 PFAM: YbbR-like protein YP_003091681.1 PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase YP_003091684.1 PFAM: MarR family YP_003091685.1 PFAM: ZIP Zinc transporter YP_003091686.1 PFAM: PAP2 superfamily YP_003091687.1 PFAM: Methyltransferase domain YP_003091688.1 PFAM: Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I YP_003091689.1 PFAM: Aminotransferase class-V YP_003091690.1 PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit YP_003091691.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_003091692.1 PFAM: Protein of unknown function (DUF1452) YP_003091693.1 PFAM: Acetyltransferase (GNAT) family YP_003091694.1 PFAM: HMGL-like YP_003091695.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003091696.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_003091697.1 PFAM: Dihydrofolate reductase YP_003091698.1 PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase YP_003091700.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_003091701.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine sulfhydrylase YP_003091704.1 PFAM: Integral membrane protein DUF6 YP_003091705.1 PFAM: Predicted permease YjgP/YjgQ family YP_003091706.1 PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, queuosine-34-forming; tRNA-guanine transglycosylases, various specificities YP_003091707.1 PFAM: Glycosyl transferase family 2 YP_003091708.1 PFAM: Glucose inhibited division protein; TIGRFAM: glucose-inhibited division protein B YP_003091709.1 PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA YP_003091710.1 PFAM: CBS domain pair; Pyridoxal-phosphate dependent enzyme; TIGRFAM: cystathionine beta-synthase YP_003091711.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003091713.1 PFAM: UvrD/REP helicase YP_003091714.1 PFAM: Peptidase family M20/M25/M40 YP_003091715.1 PFAM: Glycosyl hydrolases family 25 YP_003091717.1 PFAM: Phospholipase D Active site motif YP_003091718.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: o-succinylbenzoic acid (OSB) synthetase YP_003091719.1 PFAM: Protein of unknown function, DUF255 YP_003091722.1 PFAM: Predicted permease YP_003091723.1 PFAM: ABC transporter YP_003091724.1 PFAM: ABC transporter YP_003091726.1 PFAM: Nitroreductase family YP_003091728.1 PFAM: Polysaccharide deacetylase YP_003091730.1 PFAM: Domain of unknown function (DUF377) YP_003091731.1 PFAM: Glycosyl transferases group 1 YP_003091732.1 PFAM: ATPase family associated with various cellular activities (AAA); ATPase family associated with various cellular activities (AAA); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent chaperone ClpB YP_003091733.1 PFAM: Domain of unknown function (DU1801) YP_003091734.1 PFAM: Major Facilitator Superfamily YP_003091735.1 PFAM: Heparinase II/III-like protein YP_003091736.1 PFAM: Bacterial regulatory protein, arsR family YP_003091737.1 PFAM: NADH:flavin oxidoreductase / NADH oxidase family YP_003091738.1 PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003091739.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase YP_003091740.1 PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003091741.1 PFAM: NUDIX domain YP_003091742.1 PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain YP_003091743.1 PFAM: hypothetical protein 95; TIGRFAM: methyltransferase YP_003091747.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091748.1 PFAM: GtrA-like protein YP_003091749.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091750.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_003091751.1 PFAM: Outer membrane efflux protein YP_003091752.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003091753.1 PFAM: AcrB/AcrD/AcrF family YP_003091754.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_003091755.1 PFAM: Protein of unknown function DUF58 YP_003091757.1 PFAM: von Willebrand factor A domain YP_003091758.1 PFAM: von Willebrand factor A domain YP_003091761.1 PFAM: Bacterial SH3 domain; Tetratricopeptide repeat YP_003091762.1 PFAM: AsmA family YP_003091764.1 PFAM: Fatty acid hydroxylase superfamily YP_003091765.1 PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091766.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003091767.1 PFAM: AhpC/TSA family YP_003091769.1 TIGRFAM: GTP-binding hypothetical protein YP_003091772.1 PFAM: Streptomycin adenylyltransferase YP_003091773.1 PFAM: Calcineurin-like phosphoesterase YP_003091775.1 PFAM: RagB, SusD and hypothetical proteins YP_003091776.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003091777.1 PFAM: FecR protein YP_003091778.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003091783.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_003091784.1 PFAM: Protein of unknown function (DUF1573) YP_003091785.1 PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; Transketolase, C-terminal domain YP_003091786.1 PFAM: Chorismate synthase; TIGRFAM: chorismate synthase YP_003091787.1 PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase YP_003091788.1 PFAM: Chorismate mutase type II; DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase YP_003091789.1 PFAM: ACT domain; Prephenate dehydratase YP_003091790.1 PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase YP_003091792.1 PFAM: Proline dehydrogenase YP_003091793.1 PFAM: Peroxidase; TIGRFAM: catalase/peroxidase HPI YP_003091794.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_003091795.1 PFAM: Methyltransferase domain YP_003091797.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003091798.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003091799.1 PFAM: Response regulator receiver domain YP_003091800.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain YP_003091801.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; 7TM diverse intracellular signalling YP_003091803.1 PFAM: Nitroreductase family; ThiF family YP_003091804.1 PFAM: Response regulator receiver domain YP_003091805.1 PFAM: PKD domain YP_003091807.1 PFAM: Sigma-54 factor, core binding domain; Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor YP_003091810.1 PFAM: GlcNAc-PI de-N-acetylase YP_003091811.1 PFAM: Glycosyl transferases group 1 YP_003091813.1 PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein YP_003091816.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003091817.1 PFAM: LytTr DNA-binding domain; Response regulator receiver domain YP_003091818.1 PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type YP_003091819.1 PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial YP_003091820.1 PFAM: Domain of unknown function DUF37; TIGRFAM: hypothetical protein TIGR00278 YP_003091821.1 PFAM: Glycoprotease family YP_003091824.1 PFAM: Protein of unknown function (DUF423) YP_003091825.1 PFAM: DEAD/DEAH box helicase; Helicase conserved C-terminal domain; TIGRFAM: primosomal protein N' YP_003091826.1 PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_003091827.1 PFAM: SmpB protein; TIGRFAM: SsrA-binding protein YP_003091828.1 PFAM: Universal stress protein family; Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters YP_003091829.1 PFAM: Iron dependent repressor, N-terminal DNA binding domain; FeoA domain; Iron dependent repressor, metal binding and dimerisation domain YP_003091830.1 PFAM: AsnC family YP_003091831.1 PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase YP_003091834.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_003091835.1 PFAM: AMP-binding enzyme YP_003091836.1 PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein YP_003091837.1 PFAM: NifU-like N terminal domain; TIGRFAM: FeS cluster assembly scaffold IscU YP_003091838.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; cysteine desulfurase IscS YP_003091839.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase YP_003091841.1 PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31 YP_003091843.1 PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase YP_003091844.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_003091845.1 PFAM: Mur ligase middle domain; Mur ligase family, catalytic domain YP_003091846.1 PFAM: Helix-turn-helix YP_003091849.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091851.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH) YP_003091852.1 PFAM: Xylose isomerase-like TIM barrel YP_003091853.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003091854.1 PFAM: Glycosyl hydrolases family 28 YP_003091856.1 PFAM: Glycosyl hydrolases family 28 YP_003091857.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family YP_003091858.1 PFAM: Peptidase family M28 YP_003091859.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Histidine kinase YP_003091860.1 PFAM: LytTr DNA-binding domain; Response regulator receiver domain YP_003091861.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091863.1 PFAM: Radical SAM superfamily; TIGRFAM: hypothetical protein TIGR00423 YP_003091864.1 PFAM: Insulinase (Peptidase family M16); Peptidase M16 inactive domain YP_003091865.1 PFAM: Peptidase M16 inactive domain YP_003091866.1 PFAM: Transglutaminase-like superfamily YP_003091867.1 PFAM: Transglutaminase-like superfamily YP_003091868.1 PFAM: PQQ enzyme repeat; Calcineurin-like phosphoesterase YP_003091869.1 PFAM: IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase YP_003091871.1 PFAM: 7TMR-DISM extracellular 2; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003091872.1 PFAM: Predicted permease YP_003091873.1 PFAM: ABC transporter YP_003091874.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003091875.1 PFAM: Tetratricopeptide repeat YP_003091876.1 PFAM: Aldo/keto reductase family YP_003091877.1 PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003091878.1 PFAM: Major Facilitator Superfamily YP_003091879.1 catalyzes the interconversion of D-xylose to D-xylulose YP_003091880.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain YP_003091881.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003091882.1 PFAM: Domain of Unknown Function (DUF1080) YP_003091883.1 PFAM: RagB, SusD and hypothetical proteins; Fasciclin domain YP_003091884.1 PFAM: Pyridoxal-phosphate dependent enzyme YP_003091885.1 PFAM: Cytochrome C biogenesis protein transmembrane region YP_003091886.1 PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2 YP_003091887.1 PFAM: Carboxyl transferase domain YP_003091888.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase YP_003091889.1 PFAM: Glycosyl hydrolase family 20, catalytic domain YP_003091891.1 PFAM: Bacterial regulatory proteins, luxR family; Response regulator receiver domain YP_003091892.1 PFAM: Two component regulator propeller; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Y_Y_Y domain YP_003091894.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091896.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003091897.1 PFAM: Sodium:dicarboxylate symporter family YP_003091899.1 PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21 YP_003091900.1 PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27 YP_003091901.1 PFAM: Helix-turn-helix YP_003091902.1 PFAM: Response regulator receiver domain YP_003091903.1 PFAM: Polyprenyl synthetase YP_003091904.1 PFAM: S1 RNA binding domain; RNB domain; Ribonuclease B OB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R YP_003091905.1 PFAM: Mechanosensitive ion channel YP_003091906.1 PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: phosphonate C-P lyase system protein PhnK YP_003091908.1 PFAM: Acetyltransferase (GNAT) family YP_003091909.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_003091911.1 PFAM: Polyphosphate kinase YP_003091912.1 PFAM: Ppx/GppA phosphatase family YP_003091913.1 PFAM: 4'-phosphopantetheinyl transferase superfamily YP_003091914.1 TIGRFAM: acyl carrier protein YP_003091915.1 PFAM: Beta-ketoacyl synthase, C-terminal domain; Beta-ketoacyl synthase, N-terminal domain YP_003091916.1 PFAM: FabA-like domain YP_003091917.1 PFAM: Chalcone and stilbene synthases, C-terminal domain; Chalcone and stilbene synthases, N-terminal domain YP_003091918.1 PFAM: FAD dependent oxidoreductase YP_003091920.1 PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain YP_003091923.1 PFAM: Bacterial regulatory proteins, gntR family YP_003091925.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091932.1 PFAM: RagB, SusD and hypothetical proteins YP_003091933.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003091934.1 PFAM: FecR protein YP_003091935.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003091942.1 PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_003091943.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091947.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase YP_003091948.1 PFAM: Glucose-6-phosphate dehydrogenase, NAD binding domain; Glucose-6-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase YP_003091949.1 PFAM: 6-phosphogluconate dehydrogenase, C-terminal domain; NAD binding domain of 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating YP_003091950.1 PFAM: ROK family YP_003091951.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_003091952.1 PFAM: Thioredoxin; TIGRFAM: thioredoxin YP_003091954.1 PFAM: Collagen triple helix repeat (20 copies) YP_003091957.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003091958.1 PFAM: Phospholipase/Carboxylesterase YP_003091959.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003091961.1 PFAM: Fatty acid hydroxylase superfamily YP_003091962.1 PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters YP_003091963.1 PFAM: NAD dependent epimerase/dehydratase family YP_003091966.1 PFAM: Cytochrome c YP_003091967.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003091968.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003091969.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003091971.1 PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase YP_003091972.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase YP_003091973.1 PFAM: Bacterial regulatory proteins, lacI family YP_003091974.1 PFAM: His Kinase A (phosphoacceptor) domain; PAS fold; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_003091975.1 PFAM: Eukaryotic and archaeal DNA primase small subunit; ATP dependent DNA ligase domain; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA polymerase LigD, polymerase domain; DNA ligase D, 3'-phosphoesterase domain; DNA ligase D; DNA polymerase LigD, ligase domain YP_003091977.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH) YP_003091979.1 PFAM: Melibiase YP_003091981.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003091982.1 PFAM: RagB, SusD and hypothetical proteins YP_003091983.1 PFAM: Glycosyl hydrolases family 28 YP_003091984.1 PFAM: DUF218 domain YP_003091985.1 PFAM: Ku70/Ku80 beta-barrel domain; TIGRFAM: Ku protein, prokaryotic YP_003091987.1 PFAM: His Kinase A (phosphoacceptor) domain; 7TMR-DISM extracellular 2; 7TM diverse intracellular signalling; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003091989.1 PFAM: PAS fold; PAS fold; TIGRFAM: PAS domain S-box YP_003091990.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003091991.1 PFAM: Bacterial regulatory protein, arsR family YP_003091995.1 PFAM: Domain of unknown function (DUF377) YP_003091996.1 PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain YP_003091998.1 PFAM: short chain dehydrogenase YP_003092000.1 PFAM: Protein of unknown function (DUF892) YP_003092002.1 PFAM: Mechanosensitive ion channel YP_003092004.1 PFAM: Inorganic pyrophosphatase YP_003092005.1 PFAM: 'Cold-shock' DNA-binding domain YP_003092008.1 PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) YP_003092009.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092010.1 PFAM: Protein of unknown function (DUF1016) YP_003092011.1 PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg) YP_003092016.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092017.1 PFAM: short chain dehydrogenase YP_003092018.1 PFAM: short chain dehydrogenase YP_003092019.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003092022.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092027.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092028.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092034.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092037.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092040.1 PFAM: DinB family YP_003092042.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003092043.1 PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003092044.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase YP_003092046.1 PFAM: DoxX YP_003092047.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH) YP_003092049.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; DJ-1/PfpI family YP_003092050.1 PFAM: Cyclic nucleotide-binding domain YP_003092051.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003092053.1 PFAM: Domain of unknown function (DU1801) YP_003092054.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003092055.1 PFAM: Endoribonuclease L-PSP YP_003092057.1 PFAM: alpha/beta hydrolase fold YP_003092058.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003092059.1 PFAM: alpha/beta hydrolase fold YP_003092060.1 PFAM: Domain of unknown function (DU1801) YP_003092062.1 PFAM: Acetyltransferase (GNAT) family YP_003092069.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003092070.1 PFAM: FecR protein YP_003092071.1 PFAM: TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_003092072.1 PFAM: RagB, SusD and hypothetical proteins YP_003092073.1 PFAM: Thioredoxin YP_003092074.1 PFAM: Amidohydrolase family; WD40-like Beta Propeller Repeat YP_003092081.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_003092082.1 PFAM: Aminotransferase class-V YP_003092083.1 PFAM: Protein of unknown function (DUF1016) YP_003092085.1 PFAM: Plasmid stabilisation system protein YP_003092087.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain YP_003092089.1 PFAM: Helix-turn-helix YP_003092099.1 PFAM: Cyclic nucleotide-binding domain YP_003092100.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003092108.1 PFAM: Bacterial-like globin YP_003092109.1 PFAM: Ig domain; He_PIG associated, NEW1 domain of bacterial glycohydrolase YP_003092111.1 PFAM: LytTr DNA-binding domain; Response regulator receiver domain YP_003092112.1 PFAM: Histidine kinase YP_003092113.1 PFAM: TrkA-N domain YP_003092114.1 PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_003092115.1 PFAM: Aminodeoxychorismate lyase; TIGRFAM: hypothetical protein TIGR00247 YP_003092116.1 PFAM: PASTA domain YP_003092117.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_003092119.1 PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain YP_003092121.1 PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_003092122.1 TIGRFAM: hypothetical protein TIGR00051 YP_003092123.1 PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle YP_003092124.1 PFAM: KH domain; 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; Polyribonucleotide nucleotidyltransferase, RNA binding domain; S1 RNA binding domain YP_003092125.1 PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase YP_003092126.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092127.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_003092128.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_003092129.1 PFAM: Protein of unknown function (DUF1015) YP_003092132.1 PFAM: Protein of unknown function DUF62 YP_003092133.1 PFAM: PhoH-like protein YP_003092134.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_003092135.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_003092136.1 PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: ribonuclease Z YP_003092137.1 PFAM: mce related protein; TIGRFAM: virulence factor Mce family protein YP_003092138.1 PFAM: N-acetylmuramoyl-L-alanine amidase YP_003092139.1 PFAM: N-acetylmuramoyl-L-alanine amidase YP_003092140.1 TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003092141.1 PFAM: Competence-damaged protein; Probable molybdopterin binding domain; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain YP_003092142.1 PFAM: Biotin-requiring enzyme; e3 binding domain; 2-oxoacid dehydrogenases acyltransferase (catalytic domain) YP_003092143.1 PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase YP_003092144.1 PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase YP_003092145.1 PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: OAH/OAS sulfhydrylase YP_003092146.1 PFAM: Cys/Met metabolism PLP-dependent enzyme YP_003092148.1 PFAM: NIPSNAP YP_003092150.1 PFAM: Radical SAM superfamily; TIGRFAM: hypothetical protein TIGR00423 YP_003092151.1 PFAM: Phosphoglycerate mutase family YP_003092152.1 PFAM: Uncharacterized ACR, COG1427 YP_003092153.1 This protein performs the mismatch recognition step during the DNA repair process YP_003092154.1 PFAM: NlpC/P60 family YP_003092157.1 PFAM: Transglutaminase-like superfamily YP_003092158.1 PFAM: Exonuclease YP_003092160.1 PFAM: Domain of unknown function (DUF1730); 4Fe-4S binding domain; TIGRFAM: iron-sulfur cluster binding protein YP_003092162.1 PFAM: Carbon-nitrogen hydrolase; Acetyltransferase (GNAT) family YP_003092163.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003092164.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain YP_003092165.1 PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase YP_003092166.1 PFAM: Uncharacterized ACR, COG1678 YP_003092167.1 PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein YP_003092168.1 PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein YP_003092169.1 PFAM: FAD dependent oxidoreductase; TIGRFAM: hypothetical protein TIGR00275 YP_003092170.1 PFAM: Serpin (serine protease inhibitor) YP_003092171.1 PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region; Amidohydrolase family; WD40-like Beta Propeller Repeat YP_003092172.1 PFAM: DEAD/DEAH box helicase; Helicase conserved C-terminal domain; TIGRFAM: ATP-dependent DNA helicase, RecQ family YP_003092175.1 PFAM: Cysteine-rich domain YP_003092176.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_003092177.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_003092178.1 PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35 YP_003092179.1 PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20 YP_003092180.1 TIGRFAM: dethiobiotin synthase YP_003092181.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_003092182.1 PFAM: Helix-turn-helix YP_003092184.1 PFAM: WD40-like Beta Propeller Repeat; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003092185.1 PFAM: Transglycosylase; Penicillin binding protein transpeptidase domain YP_003092186.1 PFAM: Polyphosphate kinase 2 YP_003092188.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092195.1 PFAM: Biotin-requiring enzyme YP_003092196.1 PFAM: ABC-2 type transporter YP_003092197.1 PFAM: ABC-2 type transporter YP_003092198.1 PFAM: Protein of unknown function DUF72 YP_003092201.1 PFAM: FecR protein YP_003092202.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003092206.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003092207.1 PFAM: haloacid dehalogenase-like hydrolase YP_003092209.1 PFAM: Bacterial stress protein YP_003092210.1 PFAM: Bacterial stress protein YP_003092211.1 PFAM: Toxic anion resistance protein (TelA) YP_003092213.1 PFAM: Integral membrane protein TerC family YP_003092214.1 PFAM: OmpA family YP_003092215.1 PFAM: Metallo-beta-lactamase superfamily YP_003092216.1 PFAM: NAD dependent epimerase/dehydratase family YP_003092217.1 PFAM: 'Cold-shock' DNA-binding domain YP_003092220.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; Response regulator receiver domain; GAF domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; PAS domain S-box YP_003092222.1 PFAM: Response regulator receiver domain YP_003092223.1 PFAM: Bacterial sugar transferase YP_003092226.1 PFAM: Glycosyl transferases group 1 YP_003092228.1 PFAM: Chain length determinant protein YP_003092231.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_003092232.1 PFAM: Glycosyl transferase family 2 YP_003092233.1 PFAM: Glycosyl transferases group 1 YP_003092235.1 PFAM: Glycosyl transferase family 2 YP_003092237.1 PFAM: FAD dependent oxidoreductase YP_003092238.1 PFAM: Polysaccharide biosynthesis protein YP_003092239.1 PFAM: Glycosyl transferase family 2 YP_003092241.1 PFAM: Glycosyl transferase family 11 YP_003092243.1 PFAM: Core-2/I-Branching enzyme YP_003092245.1 PFAM: haloacid dehalogenase-like hydrolase YP_003092246.1 PFAM: UbiA prenyltransferase family YP_003092250.1 PFAM: Acyltransferase family YP_003092251.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003092252.1 PFAM: FecR protein YP_003092253.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092254.1 PFAM: RagB, SusD and hypothetical proteins YP_003092255.1 PFAM: AhpC/TSA family YP_003092256.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003092259.1 PFAM: FecR protein YP_003092260.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_003092262.1 PFAM: AhpC/TSA family YP_003092266.1 PFAM: Helix-turn-helix YP_003092283.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003092284.1 PFAM: Glycosyl transferase family 2 YP_003092285.1 PFAM: Acyl transferase domain; Cytochrome P450 YP_003092286.1 PFAM: UbiA prenyltransferase family YP_003092287.1 PFAM: Prenyltransferase and squalene oxidase repeat YP_003092288.1 PFAM: Glycosyl transferases group 1 YP_003092289.1 PFAM: ABC transporter YP_003092290.1 PFAM: Acyltransferase family YP_003092291.1 PFAM: Glycosyl transferase family 2 YP_003092292.1 PFAM: Glycosyl transferase family 2 YP_003092293.1 PFAM: ABC transporter YP_003092294.1 PFAM: ABC-2 type transporter YP_003092295.1 PFAM: Polysaccharide deacetylase YP_003092296.1 PFAM: Methyltransferase domain YP_003092297.1 PFAM: Glycosyl transferase family 2 YP_003092298.1 PFAM: Glycosyl transferase family 2 YP_003092299.1 PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantethiene--protein transferase domain YP_003092300.1 PFAM: Condensation domain; AMP-binding enzyme; Methyltransferase domain; TIGRFAM: amino acid adenylation domain YP_003092301.1 PFAM: Aminotransferase class-III; AMP-binding enzyme; Acyl transferase domain; Beta-ketoacyl synthase, N-terminal domain; TIGRFAM: amino acid adenylation domain YP_003092305.1 PFAM: Peptidase S46 YP_003092308.1 PFAM: Methylpurine-DNA glycosylase (MPG); TIGRFAM: DNA-3-methyladenine glycosylase (3mg) YP_003092309.1 PFAM: Uncharacterised protein family (UPF0187) YP_003092310.1 PFAM: Histone deacetylase domain YP_003092311.1 PFAM: DNA topoisomerase; Toprim domain; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid YP_003092312.1 PFAM: Aminotransferase class IV YP_003092313.1 PFAM: Peptidase family S58 YP_003092314.1 PFAM: Metallo-beta-lactamase superfamily YP_003092317.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_003092320.1 PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type) YP_003092321.1 PFAM: Major Facilitator Superfamily; TIGRFAM: nucleoside transporter YP_003092322.1 PFAM: UvrB/uvrC motif; Uncharacterised ACR, COG1259 YP_003092323.1 PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain YP_003092324.1 PFAM: Electron transfer flavoprotein domain YP_003092325.1 PFAM: Tetratricopeptide repeat YP_003092326.1 PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family YP_003092327.1 PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: replicative DNA helicase YP_003092328.1 PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, , group 3 YP_003092329.1 PFAM: Nucleotidyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_003092330.1 PFAM: CBS domain pair; SIS domain; TIGRFAM: KpsF/GutQ family protein YP_003092331.1 PFAM: DEAD/DEAH box helicase; RQC domain; Helicase conserved C-terminal domain; HRDC domain; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ YP_003092332.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_003092333.1 PFAM: Tetratricopeptide repeat; WD40-like Beta Propeller Repeat; OmpA family YP_003092334.1 PFAM: Radical SAM superfamily YP_003092335.1 PFAM: Rieske [2Fe-2S] domain YP_003092336.1 PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain YP_003092337.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003092338.1 PFAM: Carbon-nitrogen hydrolase YP_003092339.1 PFAM: Aminotransferase class I and II YP_003092340.1 PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein YP_003092341.1 PFAM: Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain YP_003092344.1 PFAM: Aldo/keto reductase family YP_003092345.1 PFAM: Protein of unknown function, DUF480 YP_003092346.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003092347.1 PFAM: RagB, SusD and hypothetical proteins YP_003092351.1 PFAM: FAD dependent oxidoreductase YP_003092352.1 PFAM: hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein YP_003092353.1 PFAM: Helix-turn-helix; Pentapeptide repeats (8 copies) YP_003092354.1 PFAM: FAD binding domain of DNA photolyase; DNA photolyase YP_003092355.1 TIGRFAM: lycopene cyclase domain YP_003092356.1 PFAM: Fatty acid hydroxylase superfamily YP_003092359.1 PFAM: Squalene/phytoene synthase YP_003092360.1 PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase YP_003092361.1 PFAM: MarR family YP_003092362.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate YP_003092363.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003092364.1 PFAM: ABC transporter YP_003092365.1 PFAM: Beta-lactamase YP_003092367.1 PFAM: Aldehyde dehydrogenase family YP_003092368.1 PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003092369.1 PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain YP_003092372.1 TIGRFAM: alpha-glucan phosphorylases YP_003092373.1 PFAM: Selenoprotein W-related family; TIGRFAM: selT/selW/selH selenoprotein domain YP_003092378.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Histidine kinase YP_003092379.1 PFAM: Beta-lactamase YP_003092380.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003092381.1 PFAM: Stage II sporulation protein E (SpoIIE); Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003092382.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003092383.1 PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor YP_003092384.1 PFAM: STAS domain YP_003092385.1 PFAM: Response regulator receiver domain YP_003092386.1 PFAM: alpha/beta hydrolase fold YP_003092387.1 PFAM: Bacterial regulatory protein, arsR family YP_003092388.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003092391.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003092392.1 PFAM: HxlR-like helix-turn-helix YP_003092393.1 PFAM: short chain dehydrogenase YP_003092394.1 PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA YP_003092395.1 PFAM: haloacid dehalogenase-like hydrolase; Polynucleotide kinase 3 phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family domain YP_003092396.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_003092397.1 PFAM: GXGXG motif; Glutamine amidotransferases class-II; Glutamate synthase central domain; Conserved region in glutamate synthase YP_003092398.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit YP_003092399.1 PFAM: SpoU rRNA Methylase family YP_003092400.1 PFAM: GHMP kinases N terminal domain; GHMP kinases C terminal; Galactokinase galactose-binding signature; TIGRFAM: galactokinase YP_003092401.1 PFAM: Aldose 1-epimerase YP_003092402.1 PFAM: DSBA-like thioredoxin domain YP_003092403.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003092404.1 PFAM: FecR protein YP_003092405.1 PFAM: Secretin and TonB N terminus short domain; TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092406.1 PFAM: RagB, SusD and hypothetical proteins YP_003092417.1 PFAM: Protein of unknown function (DUF2466) YP_003092421.1 PFAM: Domain of unknown function DUF81 YP_003092422.1 PFAM: MatE; TIGRFAM: efflux protein, MATE family YP_003092423.1 PFAM: Divergent AAA domain YP_003092427.1 PFAM: Major Facilitator Superfamily YP_003092428.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_003092429.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit YP_003092430.1 PFAM: Tetratricopeptide repeat YP_003092431.1 PFAM: Tetratricopeptide repeat YP_003092432.1 PFAM: Bacterial membrane protein of unknown function (DUF893); TIGRFAM: hypothetical membrane protein, TIGR01666 YP_003092433.1 PFAM: OsmC-like protein YP_003092434.1 PFAM: Biotin and Thiamin Synthesis associated domain; Radical SAM superfamily; TIGRFAM: biotin synthetase YP_003092435.1 PFAM: Divalent cation transporter; MgtE intracellular N domain; CBS domain pair; TIGRFAM: Mg2+ transporter (mgtE) YP_003092436.1 PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) YP_003092437.1 PFAM: WbqC-like protein family YP_003092438.1 PFAM: Bacterial lipid A biosynthesis acyltransferase YP_003092439.1 PFAM: Glycosyl transferase family 2 YP_003092440.1 PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II YP_003092441.1 PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerD YP_003092442.1 PFAM: Methyltransferase small domain; TIGRFAM: HemK family methylases; protein-(glutamine-N5) methyltransferase, release factor-specific YP_003092443.1 PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin biosynthesis protein RibD; riboflavin-specific deaminase C-terminal domain YP_003092444.1 PFAM: Integral membrane protein DUF6 YP_003092445.1 PFAM: Uncharacterized protein family UPF0029; TIGRFAM: hypothetical protein TIGR00257 YP_003092446.1 PFAM: Phosphorylase superfamily YP_003092448.1 PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase YP_003092450.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_003092451.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092452.1 PFAM: 5'-nucleotidase, C-terminal domain YP_003092453.1 PFAM: Glutathione peroxidase YP_003092455.1 PFAM: DNA topoisomerase; Toprim domain; TIGRFAM: DNA topoisomerase I, bacterial YP_003092457.1 PFAM: Alpha-2-macroglobulin family N-terminal region; Alpha-2-macroglobulin family N-terminal region YP_003092458.1 PFAM: Transglycosylase; Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; TIGRFAM: penicillin-binding protein 1C YP_003092459.1 PFAM: YhhN-like protein YP_003092460.1 PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_003092461.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase YP_003092463.1 PFAM: NAD dependent epimerase/dehydratase family YP_003092464.1 PFAM: Exonuclease VII small subunit YP_003092465.1 PFAM: Exonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit YP_003092466.1 PFAM: LD-carboxypeptidase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092468.1 PFAM: Domain of Unknown Function (DUF1080) YP_003092469.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092470.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003092471.1 PFAM: Cytochrome c YP_003092472.1 PFAM: Domain of Unknown Function (DUF1080) YP_003092473.1 PFAM: Major Facilitator Superfamily YP_003092474.1 PFAM: Cytochrome c; PKD domain YP_003092476.1 PFAM: Domain of unknown function (DUF303) YP_003092477.1 PFAM: Major Facilitator Superfamily YP_003092478.1 PFAM: Kelch motif YP_003092479.1 PFAM: Dihydrodipicolinate synthetase family YP_003092480.1 PFAM: BNR/Asp-box repeat YP_003092481.1 PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003092483.1 PFAM: RagB, SusD and hypothetical proteins YP_003092484.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092485.1 PFAM: Fasciclin domain YP_003092486.1 PFAM: RagB, SusD and hypothetical proteins YP_003092487.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092488.1 PFAM: Fasciclin domain YP_003092490.1 PFAM: Dihydrodipicolinate synthetase family YP_003092491.1 PFAM: RagB, SusD and hypothetical proteins YP_003092492.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092494.1 PFAM: FCD domain; Bacterial regulatory proteins, gntR family YP_003092495.1 PFAM: Trehalose-phosphatase; Glycosyltransferase family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB YP_003092496.1 PFAM: Glycosyl hydrolases family 15 YP_003092497.1 PFAM: Beta-lactamase YP_003092498.1 PFAM: ABC transporter; ABC transporter transmembrane region YP_003092499.1 PFAM: ABC transporter transmembrane region; ABC transporter YP_003092500.1 PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold YP_003092503.1 PFAM: Glycosyl hydrolases family 43 YP_003092504.1 PFAM: Glycosyl Hydrolase Family 88 YP_003092505.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2264) YP_003092506.1 PFAM: RagB, SusD and hypothetical proteins YP_003092507.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092508.1 PFAM: RagB, SusD and hypothetical proteins YP_003092509.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092510.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092511.1 PFAM: FecR protein YP_003092512.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003092513.1 PFAM: Sulfatase YP_003092514.1 PFAM: RagB, SusD and hypothetical proteins YP_003092515.1 PFAM: Secretin and TonB N terminus short domain; TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092516.1 PFAM: FecR protein YP_003092517.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003092519.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003092520.1 PFAM: Histidine kinase YP_003092521.1 PFAM: Cytochrome C biogenesis protein transmembrane region YP_003092523.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_003092524.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_003092525.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003092526.1 PFAM: Bacterial regulatory proteins, tetR family YP_003092527.1 PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family YP_003092528.1 PFAM: D-mannonate dehydratase (UxuA); TIGRFAM: mannonate dehydratase YP_003092529.1 PFAM: short chain dehydrogenase YP_003092530.1 PFAM: pfkB family carbohydrate kinase YP_003092531.1 PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase YP_003092532.1 PFAM: Helix-turn-helix YP_003092534.1 PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family YP_003092535.1 PFAM: Phosphotransferase enzyme family YP_003092537.1 PFAM: Aldehyde dehydrogenase family YP_003092538.1 PFAM: Major Facilitator Superfamily YP_003092541.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_003092542.1 PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1 YP_003092545.1 PFAM: Glycosyl hydrolase family 20, domain 2; Glycosyl hydrolase family 20, catalytic domain YP_003092546.1 PFAM: Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 C terminal domain YP_003092548.1 PFAM: RagB, SusD and hypothetical proteins YP_003092549.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain YP_003092550.1 PFAM: FecR protein YP_003092551.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003092555.1 PFAM: Bacterial regulatory proteins, luxR family YP_003092557.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase YP_003092560.1 PFAM: Glycosyl Hydrolase Family 88 YP_003092564.1 PFAM: RagB, SusD and hypothetical proteins YP_003092565.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092566.1 PFAM: Glycosyl Hydrolase Family 88 YP_003092569.1 PFAM: Bacterial alpha-L-rhamnosidase YP_003092570.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003092572.1 PFAM: Glycosyl Hydrolase Family 88 YP_003092574.1 PFAM: Domain of unknown function (DUF303) YP_003092576.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003092577.1 TIGRFAM: glucose/galactose transporter YP_003092578.1 PFAM: short chain dehydrogenase YP_003092579.1 PFAM: short chain dehydrogenase YP_003092580.1 PFAM: SMP-30/Gluconolaconase/LRE-like region YP_003092581.1 PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_003092582.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_003092583.1 PFAM: Domain of unknown function DUF20 YP_003092584.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003092585.1 PFAM: Arginase family; TIGRFAM: arginase YP_003092586.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain YP_003092588.1 PFAM: Protein phosphatase 2C YP_003092589.1 PFAM: Cell cycle protein; Penicillin binding protein transpeptidase domain YP_003092590.1 PFAM: FHA domain YP_003092591.1 PFAM: Protein kinase domain YP_003092592.1 PFAM: Hsp20/alpha crystallin family YP_003092593.1 PFAM: Thioesterase superfamily; TIGRFAM: hypothetical protein TIGR00051 YP_003092594.1 PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase YP_003092595.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain; Acyl-CoA dehydrogenase, middle domain YP_003092596.1 PFAM: Protein of unknown function (DUF2569); TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) YP_003092597.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003092598.1 PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase YP_003092599.1 PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase YP_003092600.1 PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II YP_003092601.1 PFAM: Response regulator receiver domain YP_003092602.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_003092603.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_003092604.1 PFAM: Amino acid kinase family; PUA domain; TIGRFAM: glutamate 5-kinase YP_003092605.1 PFAM: OsmC-like protein YP_003092606.1 PFAM: AsmA family YP_003092607.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_003092608.1 PFAM: Peptidase family M23 YP_003092609.1 PFAM: Beta-lactamase YP_003092611.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092612.1 PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region; Prolyl oligopeptidase family; WD40-like Beta Propeller Repeat YP_003092613.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003092614.1 PFAM: short chain dehydrogenase YP_003092615.1 PFAM: NAD dependent epimerase/dehydratase family YP_003092618.1 PFAM: TonB-dependent Receptor Plug Domain YP_003092619.1 PFAM: Redoxin YP_003092621.1 PFAM: FecR protein YP_003092622.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003092623.1 PFAM: Bacterial dnaA protein helix-turn-helix domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA YP_003092624.1 PFAM: RNA pseudouridylate synthase YP_003092627.1 PFAM: Peptidase family M23 YP_003092628.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_003092629.1 PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: serine O-acetyltransferase YP_003092630.1 PFAM: Peptidase dimerisation domain; TIGRFAM: aminoacyl-histidine dipeptidase YP_003092631.1 TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase YP_003092632.1 PFAM: PAP2 superfamily YP_003092633.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003092634.1 PFAM: Luciferase-like monooxygenase YP_003092638.1 PFAM: TonB-dependent Receptor Plug Domain YP_003092640.1 PFAM: NUMOD1 domain YP_003092641.1 PFAM: FecR protein YP_003092644.1 PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form YP_003092645.1 PFAM: Di-haem cytochrome c peroxidase YP_003092646.1 PFAM: Phosphoesterase family; TIGRFAM: acid phosphatase, Burkholderia-type YP_003092647.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_003092649.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003092652.1 PFAM: RibD C-terminal domain YP_003092653.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003092654.1 PFAM: Bacterial regulatory protein, arsR family YP_003092656.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003092664.1 PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; DNA-directed DNA polymerase III (polc) YP_003092669.1 PFAM: Uncharacterised protein family UPF0047; TIGRFAM: hypothetical protein TIGR00149 YP_003092670.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_003092671.1 PFAM: OmpA family YP_003092672.1 PFAM: DinB family YP_003092674.1 PFAM: Heparinase II/III-like protein YP_003092675.1 PFAM: Heparinase II/III-like protein YP_003092676.1 PFAM: Domain of unknown function (DU1801) YP_003092678.1 PFAM: Methyltransferase domain YP_003092679.1 PFAM: DinB family YP_003092680.1 PFAM: NUDIX domain; TIGRFAM: mutator mutT protein YP_003092681.1 PFAM: Beta-lactamase YP_003092682.1 TIGRFAM: TonB family C-terminal domain YP_003092683.1 PFAM: FAD linked oxidases, C-terminal domain; FAD binding domain YP_003092684.1 PFAM: Aldehyde dehydrogenase family YP_003092686.1 PFAM: Saccharopine dehydrogenase YP_003092687.1 PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_003092692.1 PFAM: Iron-binding zinc finger CDGSH type YP_003092694.1 PFAM: SnoaL-like polyketide cyclase YP_003092695.1 PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein; drug resistance transporter, Bcr/CflA subfamily YP_003092697.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain YP_003092698.1 PFAM: Acetyltransferase (GNAT) family YP_003092700.1 PFAM: Membrane dipeptidase (Peptidase family M19) YP_003092701.1 PFAM: Stress responsive A/B Barrel Domain YP_003092702.1 PFAM: Bacterial virulence protein (VirJ) YP_003092703.1 PFAM: Bacterial virulence protein (VirJ) YP_003092704.1 PFAM: Family of unknown function (DUF470); Family of unknown function (DUF471); Family of unknown function (DUF472); TIGRFAM: hypothetical protein YP_003092705.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003092706.1 PFAM: Histidine kinase YP_003092707.1 PFAM: NAD dependent epimerase/dehydratase family YP_003092708.1 PFAM: short chain dehydrogenase YP_003092710.1 PFAM: Integral membrane protein DUF6 YP_003092711.1 PFAM: Peptidase family M1; Leukotriene A4 hydrolase, C-terminal YP_003092713.1 PFAM: PhoH-like protein YP_003092715.1 PFAM: Cytochrome c; TIGRFAM: membrane-bound dehydrogenase domain YP_003092716.1 PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family YP_003092720.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003092721.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003092724.1 PFAM: Prolyl oligopeptidase family; Prolyl oligopeptidase, N-terminal beta-propeller domain YP_003092725.1 PFAM: Universal stress protein family YP_003092727.1 PFAM: Major Facilitator Superfamily YP_003092730.1 PFAM: Major Facilitator Superfamily YP_003092731.1 PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS YP_003092732.1 PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC YP_003092733.1 PFAM: Thiamine monophosphate synthase/TENI YP_003092734.1 PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase YP_003092735.1 PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase YP_003092736.1 PFAM: Thiazole biosynthesis protein ThiG YP_003092737.1 PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: thiazole biosynthesis protein ThiH YP_003092738.1 PFAM: MoeZ/MoeB domain; ThiF family YP_003092740.1 PFAM: GMC oxidoreductase; FAD dependent oxidoreductase YP_003092741.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092743.1 PFAM: Surface antigen YP_003092746.1 PFAM: Polyphosphate kinase YP_003092748.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003092749.1 PFAM: Cytochrome oxidase maturation protein cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type YP_003092750.1 CcoN/CcoO FixN/FixO YP_003092752.1 PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III YP_003092753.1 TIGRFAM: cytochrome c oxidase accessory protein FixG YP_003092754.1 PFAM: FixH YP_003092756.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003092757.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain YP_003092758.1 PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain; Response regulator receiver domain YP_003092759.1 PFAM: PAS fold; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_003092761.1 PFAM: SCO1/SenC YP_003092764.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092767.1 PFAM: Thioesterase superfamily YP_003092768.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_003092769.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_003092770.1 PFAM: Osmosensitive K+ channel His kinase sensor domain YP_003092772.1 PFAM: K+-transporting ATPase, c chain; TIGRFAM: K+-transporting ATPase, C subunit YP_003092773.1 PFAM: haloacid dehalogenase-like hydrolase; E1-E2 ATPase; TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003092774.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_003092776.1 PFAM: Sigma-54 interaction domain YP_003092778.1 PFAM: SCO1/SenC YP_003092780.1 PFAM: PepSY-associated TM helix YP_003092782.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092783.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003092785.1 PFAM: Sigma-54 interaction domain YP_003092786.1 PFAM: CBS domain pair; Voltage gated chloride channel YP_003092787.1 PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family YP_003092788.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003092789.1 PFAM: AhpC/TSA family YP_003092790.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003092791.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092792.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092793.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003092794.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003092795.1 PFAM: RagB, SusD and hypothetical proteins YP_003092796.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_003092797.1 PFAM: FecR protein YP_003092798.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003092799.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092800.1 PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003092801.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003092802.1 PFAM: MerR family regulatory protein YP_003092804.1 PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein YP_003092805.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003092806.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003092807.1 PFAM: Integral membrane protein DUF6 YP_003092808.1 PFAM: AcrB/AcrD/AcrF family YP_003092809.1 TIGRFAM: RND family efflux transporter, MFP subunit YP_003092811.1 PFAM: PAP2 superfamily YP_003092812.1 PFAM: Enoyl-CoA hydratase/isomerase family YP_003092814.1 PFAM: Sulfatase YP_003092815.1 PFAM: Dipeptidyl peptidase IV (DPP IV) N-terminal region; Prolyl oligopeptidase family YP_003092816.1 PFAM: Aldose 1-epimerase YP_003092817.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain YP_003092819.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092820.1 PFAM: AsnC family YP_003092822.1 PFAM: Glycosyl hydrolases family 43 YP_003092823.1 PFAM: F5/8 type C domain YP_003092825.1 PFAM: RagB, SusD and hypothetical proteins YP_003092826.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092828.1 PFAM: ATP dependent DNA ligase C terminal region; DNA ligase N terminus; ATP dependent DNA ligase domain YP_003092829.1 PFAM: DEAD/DEAH box helicase; Helicase conserved C-terminal domain; DEAD/H associated YP_003092830.1 PFAM: Calcineurin-like phosphoesterase YP_003092832.1 PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase YP_003092833.1 PFAM: NUDIX domain YP_003092834.1 PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter YP_003092835.1 PFAM: Aminotransferase class I and II YP_003092836.1 PFAM: Predicted permease YP_003092838.1 PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003092839.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_003092842.1 PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase YP_003092843.1 PFAM: ABC transporter YP_003092844.1 PFAM: Glu-tRNAGln amidotransferase C subunit; TIGRFAM: glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit YP_003092845.1 PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases YP_003092846.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003092847.1 PFAM: Deoxynucleoside kinase YP_003092848.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_003092850.1 TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003092851.1 PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200 YP_003092852.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003092853.1 PFAM: 60Kd inner membrane protein YP_003092854.1 PFAM: Prolyl oligopeptidase family YP_003092855.1 PFAM: Zinc carboxypeptidase YP_003092856.1 PFAM: Nucleoside recognition YP_003092857.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_003092859.1 PFAM: Domain of unknown function DUF11; PKD domain; TIGRFAM: conserved repeat domain YP_003092861.1 PFAM: Bacterial regulatory proteins, gntR family; FCD domain YP_003092862.1 PFAM: Metallo-beta-lactamase superfamily YP_003092863.1 PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain YP_003092864.1 PFAM: Major Facilitator Superfamily YP_003092865.1 PFAM: short chain dehydrogenase YP_003092866.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092867.1 PFAM: RagB, SusD and hypothetical proteins YP_003092870.1 PFAM: Fibronectin type III domain YP_003092871.1 PFAM: Alpha-L-fucosidase YP_003092872.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003092873.1 TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092875.1 PFAM: FAD binding domain; GMC oxidoreductase YP_003092877.1 PFAM: Acetyltransferase (GNAT) family YP_003092878.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase YP_003092879.1 PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain YP_003092882.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003092883.1 PFAM: Bacterial regulatory protein, arsR family YP_003092884.1 PFAM: DoxX YP_003092885.1 PFAM: Cupin domain YP_003092886.1 PFAM: Protein of unknown function (DUF2383); TIGRFAM: hypothetical protein YP_003092888.1 PFAM: Polyketide cyclase / dehydrase and lipid transport YP_003092890.1 PFAM: Response regulator receiver domain YP_003092891.1 PFAM: DJ-1/PfpI family; TIGRFAM: intracellular protease, PfpI family YP_003092892.1 PFAM: RibD C-terminal domain YP_003092894.1 PFAM: Hsp20/alpha crystallin family YP_003092900.1 PFAM: short chain dehydrogenase YP_003092901.1 PFAM: Glycosyl hydrolase family 20, domain 2; Glycosyl hydrolase family 20, catalytic domain YP_003092903.1 PFAM: RagB, SusD and hypothetical proteins YP_003092904.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092905.1 PFAM: Calcineurin-like phosphoesterase; FG-GAP repeat YP_003092907.1 PFAM: RagB, SusD and hypothetical proteins YP_003092908.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092909.1 PFAM: FecR protein YP_003092910.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003092911.1 PFAM: Two component regulator propeller; Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Y_Y_Y domain YP_003092912.1 PFAM: Glycosyl Hydrolase Family 88 YP_003092915.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003092916.1 PFAM: RagB, SusD and hypothetical proteins YP_003092918.1 PFAM: Bacterial regulatory proteins, luxR family YP_003092919.1 PFAM: GIY-YIG catalytic domain; Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family YP_003092920.1 PFAM: Response regulator receiver domain YP_003092921.1 PFAM: OsmC-like protein YP_003092922.1 PFAM: Protein of unknown function (DUF2383); TIGRFAM: hypothetical protein YP_003092926.1 PFAM: impB/mucB/samB family YP_003092928.1 PFAM: Sigma-70 factor, region 1.2; Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003092929.1 PFAM: RagB, SusD and hypothetical proteins YP_003092930.1 PFAM: Secretin and TonB N terminus short domain; TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003092931.1 PFAM: FecR protein YP_003092932.1 PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003092933.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003092934.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092935.1 PFAM: Domain of Unknown Function (DUF1080) YP_003092936.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092937.1 PFAM: DnaJ C terminal region; DnaJ domain YP_003092939.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_003092940.1 PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16) YP_003092941.1 PFAM: Protein of unknown function DUF47; TIGRFAM: hypothetical protein TIGR00153 YP_003092942.1 PFAM: Bacterial protein of unknown function (DUF839) YP_003092943.1 PFAM: Di-haem cytochrome c peroxidase YP_003092944.1 PFAM: Sulfate transporter family YP_003092946.1 PFAM: Outer membrane efflux protein; AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium) YP_003092947.1 PFAM: HlyD family secretion protein; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria); RND family efflux transporter, MFP subunit YP_003092948.1 PFAM: Ferric uptake regulator family YP_003092949.1 PFAM: haloacid dehalogenase-like hydrolase; E1-E2 ATPase; TIGRFAM: heavy metal translocating P-type ATPase; heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003092951.1 PFAM: Luciferase-like monooxygenase YP_003092952.1 PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_003092954.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003092956.1 PFAM: Alpha-L-fucosidase YP_003092957.1 PFAM: Glycosyl Hydrolase Family 88 YP_003092958.1 PFAM: Alpha-L-fucosidase YP_003092960.1 PFAM: Glycosyl hydrolases family 31 YP_003092963.1 PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003092964.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003092965.1 PFAM: Uncharacterized conserved protein (DUF2261) YP_003092966.1 PFAM: Alpha-L-fucosidase YP_003092968.1 TIGRFAM: hypothetical protein TIGR00305 YP_003092971.1 PFAM: Glycoside hydrolase 97 YP_003092972.1 PFAM: RagB, SusD and hypothetical proteins YP_003092973.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003092974.1 PFAM: FecR protein YP_003092976.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092977.1 PFAM: Protein of unknown function (DUF1501); TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003092978.1 PFAM: Planctomycete cytochrome C; Protein of unknown function (DUF1553); Protein of unknown function (DUF1549) YP_003092979.1 PFAM: Domain of unknown function (DUF756); Phosphoesterase family; TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type; Tat (twin-arginine translocation) pathway signal sequence YP_003092980.1 PFAM: Beta galactosidase small chain; Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain YP_003092981.1 PFAM: Glycosyl hydrolase family 20, catalytic domain YP_003092984.1 PFAM: RagB, SusD and hypothetical proteins YP_003092985.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain YP_003092986.1 PFAM: FecR protein YP_003092987.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003092988.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003092989.1 PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Y_Y_Y domain YP_003092990.1 PFAM: Aldose 1-epimerase YP_003092991.1 PFAM: NUDIX domain YP_003092992.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_003092993.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_003092994.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_003092995.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003092996.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003092997.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003092998.1 PFAM: Bacterial regulatory proteins, luxR family; Response regulator receiver domain YP_003092999.1 PFAM: Beta-lactamase YP_003093000.1 PFAM: Bacterial virulence protein (VirJ) YP_003093002.1 PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_003093003.1 PFAM: short chain dehydrogenase YP_003093004.1 PFAM: Glycosyl Hydrolase Family 88 YP_003093006.1 PFAM: Domain of unknown function (DUF303) YP_003093007.1 PFAM: Sodium Bile acid symporter family YP_003093008.1 PFAM: Asp/Glu/Hydantoin racemase YP_003093009.1 PFAM: Protein of unknown function, DUF1537 YP_003093010.1 PFAM: Ribulose bisphosphate carboxylase large chain, catalytic domain YP_003093011.1 PFAM: glycosyl hydrolase of unknown function (DUF1680) YP_003093012.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003093013.1 PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease; glucose/galactose transporter YP_003093014.1 PFAM: MaoC like domain YP_003093015.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003093016.1 PFAM: Bacterial extracellular solute-binding protein YP_003093017.1 PFAM: CoA-transferase family III YP_003093018.1 PFAM: CoA-transferase family III YP_003093019.1 PFAM: Bacterial extracellular solute-binding protein YP_003093020.1 PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain YP_003093022.1 PFAM: Alpha-L-rhamnosidase N-terminal domain; Bacterial alpha-L-rhamnosidase YP_003093023.1 PFAM: Bacterial transcriptional regulator; IclR helix-turn-helix domain YP_003093025.1 PFAM: Protein of unknown function (DUF1810) YP_003093028.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003093029.1 PFAM: Domain of unknown function (DU1801) YP_003093031.1 PFAM: Cyclic nucleotide-binding domain YP_003093032.1 PFAM: DinB family YP_003093034.1 PFAM: Bacterial alpha-L-rhamnosidase YP_003093035.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003093036.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003093038.1 PFAM: Xylose isomerase-like TIM barrel YP_003093042.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain YP_003093043.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain YP_003093044.1 PFAM: Domain of unknown function (DUF303) YP_003093050.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003093051.1 PFAM: Histidine kinase YP_003093053.1 TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003093054.1 PFAM: Cupin domain YP_003093055.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003093058.1 PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family YP_003093059.1 PFAM: L-fucose isomerase, C-terminal domain; L-fucose isomerase, second N-terminal domain YP_003093060.1 PFAM: Transketolase, thiamine diphosphate binding domain YP_003093061.1 PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain YP_003093062.1 PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family YP_003093063.1 PFAM: Predicted periplasmic lipoprotein (DUF2291) YP_003093064.1 PFAM: ABC transporter YP_003093065.1 PFAM: Branched-chain amino acid transport system / permease component YP_003093066.1 PFAM: FGGY family of carbohydrate kinases, C-terminal domain; FGGY family of carbohydrate kinases, N-terminal domain; TIGRFAM: glycerol kinase YP_003093067.1 PFAM: Protein of unknown function (DUF1593) YP_003093068.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003093070.1 PFAM: RagB, SusD and hypothetical proteins YP_003093071.1 PFAM: TonB-dependent Receptor Plug Domain YP_003093073.1 PFAM: L-fucose isomerase, second N-terminal domain YP_003093074.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093075.1 PFAM: Dihydrodipicolinate synthetase family YP_003093076.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003093077.1 PFAM: Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain YP_003093078.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003093079.1 PFAM: Glycosyl hydrolases family 28 YP_003093082.1 PFAM: AsnC family YP_003093083.1 PFAM: Major Facilitator Superfamily YP_003093084.1 PFAM: ROK family YP_003093085.1 PFAM: Response regulator receiver domain; Y_Y_Y domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003093086.1 PFAM: Sulfatase YP_003093087.1 PFAM: Sulfatase YP_003093088.1 PFAM: Sulfatase YP_003093089.1 PFAM: RagB, SusD and hypothetical proteins YP_003093090.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093091.1 PFAM: Glycosyl Hydrolase Family 88 YP_003093092.1 PFAM: Sulfatase YP_003093093.1 PFAM: Y_Y_Y domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003093097.1 PFAM: Sulfatase YP_003093099.1 PFAM: Polysaccharide lyase family 8, super-sandwich domain; Lyase, N terminal; Lyase, catalytic YP_003093100.1 PFAM: Glycosyl Hydrolase Family 88 YP_003093101.1 PFAM: Polysaccharide lyase family 8, super-sandwich domain YP_003093102.1 PFAM: Alpha-L-fucosidase YP_003093103.1 PFAM: Alpha-L-fucosidase YP_003093104.1 PFAM: RagB, SusD and hypothetical proteins YP_003093105.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003093106.1 PFAM: Glycosyl Hydrolase Family 88 YP_003093110.1 PFAM: NUDIX domain YP_003093111.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003093112.1 PFAM: RecF/RecN/SMC N terminal domain YP_003093114.1 PFAM: FecR protein YP_003093115.1 PFAM: Secretin and TonB N terminus short domain; TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093116.1 PFAM: RagB, SusD and hypothetical proteins YP_003093117.1 PFAM: AhpC/TSA family YP_003093121.1 PFAM: ORF6N domain YP_003093122.1 PFAM: Aminotransferase class I and II YP_003093131.1 PFAM: Domain of Unknown Function (DUF1080) YP_003093132.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003093133.1 PFAM: HIT domain YP_003093135.1 PFAM: ABC transporter YP_003093136.1 PFAM: NPCBM-associated, NEW3 domain of alpha-galactosidase YP_003093137.1 PFAM: MaoC like domain YP_003093138.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_003093141.1 PFAM: Domain of Unknown Function (DUF1080) YP_003093142.1 PFAM: Glycosyl Hydrolase Family 88 YP_003093143.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003093145.1 PFAM: Ig domain; NPCBM/NEW2 domain; He_PIG associated, NEW1 domain of bacterial glycohydrolase YP_003093147.1 PFAM: Ig domain; NPCBM/NEW2 domain; He_PIG associated, NEW1 domain of bacterial glycohydrolase YP_003093148.1 PFAM: Glycosyl hydrolases family 28 YP_003093150.1 PFAM: Sulfatase YP_003093151.1 PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase YP_003093152.1 PFAM: RagB, SusD and hypothetical proteins YP_003093153.1 PFAM: Secretin and TonB N terminus short domain; TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093154.1 PFAM: FecR protein YP_003093155.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003093156.1 PFAM: Ankyrin repeat YP_003093157.1 PFAM: Protein of unknown function (DUF2383); TIGRFAM: hypothetical protein YP_003093159.1 PFAM: Hsp20/alpha crystallin family YP_003093160.1 PFAM: HD domain; 7TM receptor with intracellular HD hydrolase; TIGRFAM: uncharacterized domain HDIG YP_003093161.1 PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_003093163.1 PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial YP_003093164.1 PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial YP_003093165.1 PFAM: Glycosyl transferase family 2 YP_003093166.1 PFAM: Domain of unknown function (DUF1905) YP_003093167.1 PFAM: Protein of unknown function (DUF2400); TIGRFAM: hypothetical protein TIGR02757 YP_003093168.1 PFAM: Cys/Met metabolism PLP-dependent enzyme YP_003093170.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003093172.1 PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX) YP_003093173.1 PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases YP_003093174.1 PFAM: Ferritin-like domain YP_003093175.1 PFAM: LysM domain YP_003093176.1 PFAM: Phosphoribulokinase / Uridine kinase family YP_003093177.1 PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit YP_003093178.1 PFAM: Coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit YP_003093179.1 PFAM: Glucose / Sorbosone dehydrogenase YP_003093180.1 PFAM: Smr domain; MutS domain V; TIGRFAM: MutS2 family protein YP_003093182.1 PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family YP_003093183.1 PFAM: Acetyltransferase (GNAT) family YP_003093185.1 PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase YP_003093188.1 PFAM: AhpC/TSA family; C-terminal domain of 1-Cys peroxiredoxin YP_003093189.1 PFAM: Protein of unknown function DUF72 YP_003093190.1 PFAM: Trypsin YP_003093191.1 PFAM: Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003093193.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003093194.1 PFAM: Scaffold protein Nfu/NifU N terminal; NifU-like domain YP_003093195.1 PFAM: Inositol monophosphatase family YP_003093196.1 PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase YP_003093197.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YP_003093198.1 PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases YP_003093199.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093201.1 PFAM: Sulfatase YP_003093202.1 PFAM: short chain dehydrogenase; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase YP_003093204.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate YP_003093205.1 PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family YP_003093206.1 PFAM: Cysteine-rich domain YP_003093207.1 PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: 2[4Fe-4S] protein YP_003093208.1 PFAM: Uncharacterised ACR, YkgG family COG1556 YP_003093209.1 PFAM: Major Facilitator Superfamily YP_003093210.1 PFAM: Dienelactone hydrolase family YP_003093211.1 PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family YP_003093212.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_003093213.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003093215.1 PFAM: Phosphoesterase family; TIGRFAM: 40-residue YVTN family beta-propeller repeat YP_003093216.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003093217.1 PFAM: Sodium:dicarboxylate symporter family YP_003093219.1 PFAM: metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I YP_003093221.1 PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003093222.1 PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family YP_003093223.1 PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003093227.1 PFAM: IPT/TIG domain YP_003093228.1 PFAM: Beta-lactamase YP_003093229.1 PFAM: RNase H YP_003093230.1 PFAM: Fructose-1-6-bisphosphatase YP_003093231.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family YP_003093232.1 PFAM: Methyltransferase small domain YP_003093233.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_003093235.1 PFAM: Predicted membrane protein (DUF2339) YP_003093237.1 PFAM: Glutamine synthetase, catalytic domain YP_003093238.1 PFAM: AIR synthase related protein, C-terminal domain YP_003093241.1 PFAM: Bacterial Ig-like domain (group 2); NHL repeat YP_003093242.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093243.1 PFAM: DinB family YP_003093244.1 PFAM: Peptidase S46 YP_003093245.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003093246.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003093247.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) YP_003093248.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003093249.1 PFAM: RagB, SusD and hypothetical proteins YP_003093250.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093254.1 PFAM: ROK family YP_003093255.1 PFAM: ROK family YP_003093256.1 PFAM: YeeE/YedE family (DUF395) YP_003093257.1 PFAM: YeeE/YedE family (DUF395) YP_003093258.1 PFAM: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) YP_003093260.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093261.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: dihydrolipoamide dehydrogenase YP_003093262.1 PFAM: Metallo-beta-lactamase superfamily YP_003093263.1 PFAM: Domain of unknown function (DUF1508) YP_003093264.1 PFAM: Sigma-70 factor, region 1.2; Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003093265.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_003093266.1 PFAM: Aldo/keto reductase family; TIGRFAM: voltage-dependent potassium channel beta subunit, animal YP_003093267.1 PFAM: Peptidase family M20/M25/M40 YP_003093269.1 PFAM: Peptidase family S41 YP_003093272.1 PFAM: ABC transporter YP_003093278.1 catalyzes the interconversion of succinyl-CoA and succinate YP_003093279.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003093280.1 PFAM: Conserved region in glutamate synthase YP_003093281.1 PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein YP_003093282.1 PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA YP_003093283.1 PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit YP_003093284.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003093285.1 PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase YP_003093286.1 PFAM: Glycosyl transferase family, helical bundle domain; Glycosyl transferase family, a/b domain; TIGRFAM: anthranilate phosphoribosyltransferase YP_003093287.1 PFAM: short chain dehydrogenase YP_003093288.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_003093289.1 PFAM: Sodium:solute symporter family YP_003093290.1 PFAM: Possible lysine decarboxylase; TIGRFAM: hypothetical protein, DprA/Smf-related, family 1; hypothetical protein, DprA/Smf-related, family 2 YP_003093291.1 PFAM: Protein of unknown function (DUF502) YP_003093292.1 PFAM: Alanine racemase, C-terminal domain; Mur ligase middle domain; Alanine racemase, N-terminal domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; alanine racemase YP_003093293.1 PFAM: Acetyltransferase (GNAT) family YP_003093294.1 PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator) YP_003093295.1 PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein YP_003093296.1 PFAM: Fe-S metabolism associated domain YP_003093297.1 PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufS subfamily YP_003093298.1 PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1 YP_003093299.1 PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC YP_003093300.1 with SufCD activates cysteine desulfurase SufS YP_003093301.1 PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003093302.1 PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: glutamate racemase YP_003093303.1 PFAM: Zinc carboxypeptidase YP_003093304.1 PFAM: GntP family permease; TIGRFAM: gluconate transporter YP_003093305.1 PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase YP_003093306.1 PFAM: RecX family YP_003093307.1 PFAM: Sulfatase YP_003093308.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2147) YP_003093310.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003093313.1 PFAM: AcrB/AcrD/AcrF family YP_003093314.1 PFAM: AcrB/AcrD/AcrF family YP_003093318.1 PFAM: E1-E2 ATPase; haloacid dehalogenase-like hydrolase; Heavy-metal-associated domain; TIGRFAM: copper-(or silver)-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC YP_003093319.1 PFAM: Methyltransferase domain YP_003093320.1 PFAM: Histidine kinase YP_003093321.1 PFAM: Beta-lactamase YP_003093322.1 PFAM: Metallo-beta-lactamase superfamily YP_003093323.1 PFAM: Outer membrane lipoprotein carrier protein LolA YP_003093324.1 PFAM: FtsK/SpoIIIE family; Ftsk gamma domain YP_003093325.1 PFAM: Ankyrin repeat YP_003093328.1 PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2 YP_003093329.1 PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; Rho termination factor, RNA-binding domain; TIGRFAM: transcription termination factor Rho YP_003093330.1 PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase YP_003093331.1 PFAM: Hpt domain YP_003093332.1 PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase YP_003093333.1 PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type YP_003093334.1 PFAM: PHP domain YP_003093336.1 PFAM: Glycosyltransferase family 9 (heptosyltransferase) YP_003093337.1 PFAM: Phosphoglycerate mutase family YP_003093338.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile YP_003093339.1 PFAM: ClpX C4-type zinc finger; ATPase family associated with various cellular activities (AAA); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX) YP_003093340.1 PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP YP_003093341.1 PFAM: Bacterial trigger factor protein (TF) YP_003093343.1 PFAM: Periplasmic binding protein YP_003093344.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_003093345.1 PFAM: Starch synthase catalytic domain; Glycosyl transferases group 1; TIGRFAM: glycogen/starch synthases, ADP-glucose type YP_003093346.1 PFAM: Elongation factor Tu GTP binding domain; Elongation factor Tu domain 2; TIGRFAM: small GTP-binding protein domain; sulfate adenylyltransferase, large subunit YP_003093347.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_003093348.1 PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin); thioredoxin-dependent adenylylsulfate APS reductase YP_003093349.1 PFAM: Domain of unknown function DUF81; TIGRFAM: siroheme synthase, N-terminal domain YP_003093350.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase YP_003093351.1 PFAM: HEPN domain; Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain YP_003093352.1 PFAM: Calcineurin-like phosphoesterase YP_003093354.1 PFAM: GtrA-like protein YP_003093355.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093356.1 PFAM: FecR protein YP_003093357.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003093358.1 PFAM: Biopolymer transport protein ExbD/TolR YP_003093360.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093363.1 PFAM: Beta-lactamase YP_003093367.1 PFAM: Glycosyl Hydrolase Family 88 YP_003093368.1 PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase YP_003093369.1 PFAM: PEGA domain; TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent receptor YP_003093371.1 PFAM: Glycosyl hydrolase family 20, catalytic domain YP_003093372.1 PFAM: Glycosyl hydrolases family 28 YP_003093373.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003093374.1 PFAM: Major Facilitator Superfamily YP_003093375.1 PFAM: Xylose isomerase-like TIM barrel YP_003093376.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH) YP_003093377.1 PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093378.1 PFAM: Bacterial regulatory proteins, gntR family YP_003093379.1 PFAM: Helix-turn-helix YP_003093380.1 PFAM: Bacterial regulatory protein, arsR family YP_003093381.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003093382.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003093383.1 PFAM: Histidine kinase YP_003093384.1 PFAM: Outer membrane efflux protein YP_003093385.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003093386.1 PFAM: ABC transporter YP_003093387.1 PFAM: Predicted permease YP_003093389.1 PFAM: short chain dehydrogenase YP_003093390.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH) YP_003093391.1 PFAM: Fatty acid hydroxylase superfamily YP_003093392.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E YP_003093394.1 PFAM: Acyltransferase family YP_003093395.1 PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase YP_003093396.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_003093397.1 PFAM: MarR family; AsnC family YP_003093398.1 PFAM: Xylose isomerase-like TIM barrel YP_003093399.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003093400.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_003093401.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003093402.1 PFAM: Uncharacterised protein family (UPF0175) YP_003093403.1 PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein YP_003093404.1 PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin) YP_003093406.1 PFAM: Bacterial regulatory protein, arsR family YP_003093407.1 PFAM: FecR protein YP_003093411.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003093412.1 PFAM: Bacterial regulatory proteins, tetR family YP_003093416.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003093417.1 PFAM: Histidine kinase YP_003093419.1 PFAM: Homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase YP_003093422.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093425.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_003093426.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093428.1 PFAM: RagB, SusD and hypothetical proteins YP_003093429.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003093430.1 PFAM: FecR protein YP_003093431.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003093432.1 PFAM: DnaJ domain; HSCB C-terminal oligomerisation domain; TIGRFAM: Fe-S protein assembly co-chaperone HscB YP_003093433.1 PFAM: Peptidase family M50; TIGRFAM: RIP metalloprotease RseP YP_003093434.1 PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_003093435.1 PFAM: GH3 auxin-responsive promoter YP_003093437.1 PFAM: Glycosyl transferase family 2 YP_003093438.1 PFAM: Glycosyl transferase family 2 YP_003093439.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain YP_003093442.1 PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type YP_003093443.1 PFAM: Protein of unknown function (DUF1550); TIGRFAM: N-terminal double-transmembrane domain YP_003093444.1 PFAM: Ykud domain YP_003093446.1 PFAM: Acetyltransferase (GNAT) family YP_003093448.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_003093449.1 PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase YP_003093450.1 PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase YP_003093451.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_003093452.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003093453.1 PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_003093454.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_003093455.1 PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphatase; phosphoribosyl-ATP pyrophosphohydrolase YP_003093456.1 PFAM: WD domain, G-beta repeat YP_003093457.1 PFAM: TonB-dependent Receptor Plug Domain YP_003093458.1 PFAM: NlpC/P60 family YP_003093459.1 PFAM: Universal stress protein family YP_003093460.1 PFAM: 4Fe-4S binding domain YP_003093461.1 PFAM: Acyl-CoA reductase (LuxC) YP_003093464.1 PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE YP_003093465.1 PFAM: GrpE YP_003093466.1 PFAM: DnaJ domain; DnaJ C terminal region; DnaJ central domain (4 repeats); TIGRFAM: chaperone protein DnaJ YP_003093467.1 PFAM: Ppx/GppA phosphatase family YP_003093468.1 PFAM: Maf-like protein; TIGRFAM: MAF protein YP_003093470.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA YP_003093471.1 PFAM: Protein of unknown function (DUF528); TIGRFAM: FeS assembly protein IscX YP_003093472.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain YP_003093473.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Domain of unknown function (DUF2520) YP_003093474.1 PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF YP_003093476.1 PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase, dimerisation domain YP_003093478.1 PFAM: Cytochrome C assembly protein YP_003093479.1 PFAM: ABC-2 type transporter; TIGRFAM: heme exporter protein CcmB YP_003093481.1 PFAM: Protein of unknown function (DUF421) YP_003093485.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003093486.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_003093488.1 PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK; Fe-S protein assembly chaperone HscA YP_003093490.1 PFAM: SNARE associated Golgi protein YP_003093492.1 PFAM: DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; DNA polymerase III beta subunit, C-terminal domain; TIGRFAM: DNA polymerase III, beta subunit YP_003093493.1 PFAM: ABC-type uncharacterized transport system YP_003093497.1 PFAM: alpha/beta hydrolase fold YP_003093498.1 PFAM: Bacterial regulatory proteins, luxR family YP_003093500.1 PFAM: Bacterial regulatory proteins, luxR family YP_003093505.1 PFAM: ABC transporter YP_003093506.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003093507.1 PFAM: Glycosyl hydrolase family 20, catalytic domain YP_003093508.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) YP_003093509.1 PFAM: GDSL-like Lipase/Acylhydrolase; Domain of unknown function (DUF303) YP_003093510.1 PFAM: BNR/Asp-box repeat YP_003093511.1 PFAM: Major Facilitator Superfamily YP_003093512.1 PFAM: Kelch motif YP_003093513.1 PFAM: Dihydrodipicolinate synthetase family YP_003093514.1 PFAM: RagB, SusD and hypothetical proteins YP_003093515.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093516.1 PFAM: FCD domain; Bacterial regulatory proteins, gntR family YP_003093517.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003093518.1 PFAM: DJ-1/PfpI family; Catalase-related immune-responsive; Catalase YP_003093519.1 PFAM: Ankyrin repeat YP_003093520.1 TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_003093521.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_003093522.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_003093523.1 PFAM: Sodium:sulfate symporter transmembrane region; TIGRFAM: anion transporter YP_003093525.1 PFAM: Predicted integral membrane protein (DUF2266) YP_003093528.1 PFAM: Sulfatase YP_003093530.1 phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_003093531.1 PFAM: short chain dehydrogenase YP_003093532.1 PFAM: NlpC/P60 family YP_003093533.1 PFAM: Flavin reductase like domain YP_003093534.1 PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_003093535.1 PFAM: Anaerobic c4-dicarboxylate membrane transporter; TIGRFAM: anaerobic c4-dicarboxylate membrane transporter family protein YP_003093536.1 PFAM: homogentisate 1,2-dioxygenase; TIGRFAM: homogentisate 1,2-dioxygenase YP_003093537.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase YP_003093538.1 PFAM: Ribonuclease BN-like family YP_003093541.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003093543.1 PFAM: Tetratricopeptide repeat YP_003093544.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003093545.1 PFAM: Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase YP_003093546.1 PFAM: Beta-eliminating lyase YP_003093548.1 PFAM: NUDIX domain YP_003093549.1 PFAM: Phosphofructokinase; TIGRFAM: 6-phosphofructokinase YP_003093551.1 PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_003093554.1 PFAM: Rieske [2Fe-2S] domain YP_003093556.1 PFAM: YceI-like domain YP_003093558.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003093560.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003093563.1 PFAM: Tetratricopeptide repeat YP_003093564.1 PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain; TIGRFAM: alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase YP_003093565.1 PFAM: Glycosyl hydrolases family 31 YP_003093566.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093567.1 PFAM: Penicillin amidase YP_003093570.1 PFAM: RES domain YP_003093571.1 PFAM: Protein of unknown function (DUF2384); TIGRFAM: hypothetical protein TIGR02293 YP_003093572.1 PFAM: S4 domain; tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase YP_003093574.1 PFAM: NAD-dependent DNA ligase adenylation domain; NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase C4 zinc finger domain; BRCA1 C Terminus (BRCT) domain; TIGRFAM: DNA ligase, NAD-dependent YP_003093575.1 PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase YP_003093577.1 PFAM: Aminotransferase class I and II YP_003093578.1 PFAM: Tubulin/FtsZ family, C-terminal domain; Tubulin/FtsZ family, GTPase domain; TIGRFAM: cell division protein FtsZ YP_003093579.1 PFAM: Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM; cell division protein FtsA YP_003093581.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_003093582.1 PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase YP_003093583.1 PFAM: Cell cycle protein YP_003093584.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Mur ligase middle domain; Mur ligase family, glutamate ligase domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_003093585.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_003093586.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_003093587.1 PFAM: PASTA domain; Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain YP_003093589.1 PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW YP_003093590.1 PFAM: MraZ protein; TIGRFAM: mraZ protein YP_003093591.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_003093592.1 PFAM: Acetyltransferase (GNAT) family YP_003093593.1 PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I YP_003093596.1 PFAM: Response regulator receiver domain YP_003093598.1 TIGRFAM: DNA helicase YP_003093599.1 PFAM: FAD linked oxidases, C-terminal domain; 4Fe-4S binding domain; FAD binding domain YP_003093600.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; DJ-1/PfpI family YP_003093602.1 PFAM: HlyD family secretion protein YP_003093603.1 PFAM: Peptidase C39 family; ABC transporter; ABC transporter transmembrane region; TIGRFAM: ABC-type bacteriocin transporter; type I secretion system ABC transporter, HlyB family YP_003093605.1 PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family YP_003093606.1 PFAM: Activator of Hsp90 ATPase homolog 1-like protein YP_003093608.1 PFAM: Bacterial regulatory proteins, gntR family YP_003093610.1 PFAM: ABC transporter YP_003093611.1 PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain YP_003093614.1 PFAM: Calcineurin-like phosphoesterase YP_003093615.1 PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase YP_003093616.1 PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase YP_003093619.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093620.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003093623.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093624.1 PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease YP_003093625.1 TIGRFAM: LPXTG-motif cell wall anchor domain; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003093626.1 PFAM: PAS fold; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box YP_003093627.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093628.1 PFAM: RagB, SusD and hypothetical proteins YP_003093629.1 PFAM: Sulfatase YP_003093630.1 PFAM: Sulfatase YP_003093631.1 PFAM: Domain of unknown function (DU1801) YP_003093634.1 PFAM: Chromate transporter; TIGRFAM: chromate transporter, chromate ion transporter (CHR) family YP_003093635.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Chromate resistance exported protein YP_003093636.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_003093637.1 PFAM: Adenylate kinase; TIGRFAM: adenylate kinases YP_003093638.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003093639.1 PFAM: FecR protein YP_003093640.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093642.1 PFAM: Redoxin YP_003093643.1 PFAM: Sodium/calcium exchanger protein; TIGRFAM: calcium/proton exchanger; calcium/proton exchanger (cax) YP_003093645.1 PFAM: YceI-like domain YP_003093646.1 PFAM: Sulfatase YP_003093647.1 PFAM: FecR protein YP_003093648.1 PFAM: Mechanosensitive ion channel YP_003093649.1 PFAM: Sugar (and other) transporter; TIGRFAM: metabolite-proton symporter YP_003093650.1 PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein YP_003093651.1 PFAM: Glycosyl hydrolases family 43 YP_003093653.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003093655.1 PFAM: Glycosyl hydrolase family 20, domain 2; Glycosyl hydrolase family 20, catalytic domain YP_003093656.1 PFAM: SIS domain; TIGRFAM: N-acetylmuramic acid 6-phosphate etherase YP_003093657.1 PFAM: Alpha-N-acetylglucosaminidase (NAGLU) YP_003093658.1 PFAM: Alpha-N-acetylglucosaminidase (NAGLU); TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003093659.1 PFAM: Glycosyl hydrolases family 43 YP_003093660.1 PFAM: Domain of unknown function (DUF1735) YP_003093661.1 PFAM: RagB, SusD and hypothetical proteins YP_003093662.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093663.1 PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family YP_003093664.1 PFAM: LytTr DNA-binding domain; Response regulator receiver domain YP_003093665.1 PFAM: OmpA family YP_003093669.1 PFAM: Tetratricopeptide repeat; Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003093670.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_003093671.1 PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; TIGRFAM: ATP synthase, F1 beta subunit YP_003093672.1 PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain YP_003093673.1 PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group I YP_003093674.1 PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase YP_003093675.1 PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, central domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type YP_003093676.1 PFAM: Small subunit of acetolactate synthase; ACT domain; TIGRFAM: acetolactate synthase, small subunit YP_003093678.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_003093679.1 PFAM: ABC transporter YP_003093680.1 PFAM: HMGL-like YP_003093681.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_003093682.1 PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit YP_003093683.1 PFAM: LeuA allosteric (dimerisation) domain; HMGL-like YP_003093684.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_003093685.1 PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine dehydratase; threonine ammonia-lyase, biosynthetic, long form YP_003093688.1 PFAM: TipAS antibiotic-recognition domain; MerR, DNA binding; MerR family regulatory protein YP_003093691.1 PFAM: PAS fold; TIGRFAM: PAS domain S-box YP_003093692.1 PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease YP_003093693.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate YP_003093696.1 PFAM: ABC transporter YP_003093698.1 PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: conserved hypothetical integral membrane protein YP_003093699.1 PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase YP_003093701.1 PFAM: Transcriptional regulatory protein, C terminal; Response regulator receiver domain YP_003093702.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003093703.1 PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_003093704.1 PFAM: Delta-aminolevulinic acid dehydratase YP_003093705.1 PFAM: Uroporphyrinogen-III synthase HemD; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase YP_003093706.1 PFAM: Glutamyl-tRNAGlu reductase, N-terminal domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: glutamyl-tRNA reductase YP_003093708.1 PFAM: Major Facilitator Superfamily YP_003093710.1 PFAM: Bacterial regulatory proteins, tetR family YP_003093711.1 PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_003093712.1 PFAM: RDD family YP_003093714.1 PFAM: PspC domain YP_003093715.1 PFAM: short chain dehydrogenase YP_003093716.1 PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein YP_003093717.1 PFAM: ABC transporter YP_003093721.1 PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily YP_003093725.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003093726.1 PFAM: Family of unknown function (DUF490); AsmA family YP_003093727.1 PFAM: Surface antigen YP_003093728.1 PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN) YP_003093729.1 PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003093730.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003093731.1 PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase YP_003093732.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED YP_003093733.1 PFAM: Fructose-bisphosphate aldolase class-I YP_003093734.1 PFAM: Major Facilitator Superfamily YP_003093735.1 PFAM: OmpA family YP_003093736.1 PFAM: phospholipid-binding domain YP_003093737.1 PFAM: Bacterial SH3 domain YP_003093738.1 PFAM: Fatty acid desaturase YP_003093739.1 PFAM: Mannose-6-phosphate isomerase YP_003093742.1 PFAM: Sulfatase YP_003093745.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003093746.1 PFAM: Protein of unknown function (DUF718); TIGRFAM: L-rhamnose 1-epimerase YP_003093749.1 PFAM: RagB, SusD and hypothetical proteins YP_003093750.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093751.1 PFAM: META domain YP_003093753.1 PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE YP_003093754.1 PFAM: Diacylglycerol kinase catalytic domain YP_003093755.1 PFAM: Phosphoglycerate mutase family YP_003093756.1 PFAM: FGGY family of carbohydrate kinases, C-terminal domain; FGGY family of carbohydrate kinases, N-terminal domain YP_003093757.1 PFAM: FGGY family of carbohydrate kinases, C-terminal domain; FGGY family of carbohydrate kinases, N-terminal domain YP_003093758.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_003093759.1 PFAM: Major Facilitator Superfamily; TIGRFAM: polyol permease family YP_003093760.1 PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain YP_003093761.1 PFAM: Response regulator receiver domain YP_003093763.1 PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form YP_003093764.1 PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1 YP_003093765.1 PFAM: Phage tail sheath protein YP_003093766.1 PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase YP_003093768.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_003093769.1 PFAM: Insulinase (Peptidase family M16); Peptidase M16 inactive domain YP_003093770.1 PFAM: AMP-binding enzyme; TIGRFAM: acetate--CoA ligase YP_003093771.1 PFAM: Cyclic nucleotide-binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093772.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003093774.1 PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28 YP_003093775.1 PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type YP_003093777.1 PFAM: SRP54-type protein, helical bundle domain; SRP54-type protein, GTPase domain; TIGRFAM: signal recognition particle-docking protein FtsY YP_003093778.1 PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG, TIGR01125 YP_003093779.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2317) YP_003093780.1 PFAM: Malate/L-lactate dehydrogenase YP_003093781.1 PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type YP_003093782.1 PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase YP_003093784.1 PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins YP_003093785.1 PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain YP_003093786.1 PFAM: NADPH-dependent FMN reductase YP_003093788.1 PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle YP_003093789.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093790.1 PFAM: Sulfatase YP_003093791.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003093792.1 PFAM: Voltage gated chloride channel YP_003093794.1 PFAM: Protein of unknown function (DUF1343) YP_003093795.1 PFAM: PAS fold; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box YP_003093797.1 PFAM: Predicted permease YP_003093799.1 PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP YP_003093800.1 PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase YP_003093801.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2179); Uncharacterized BCR, YitT family COG1284 YP_003093802.1 PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; cytidyltransferase-related domain YP_003093804.1 PFAM: Sodium/hydrogen exchanger family; TrkA-C domain YP_003093805.1 PFAM: LysE type translocator YP_003093806.1 PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit YP_003093807.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003093809.1 PFAM: Helix-hairpin-helix motif; Iron-sulfur binding domain of endonuclease III; TIGRFAM: endonuclease III YP_003093810.1 PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA YP_003093812.1 PFAM: Glycoprotease family; TIGRFAM: metalloendopeptidase, , glycoprotease family YP_003093813.1 PFAM: Family of unknown function (DUF490) YP_003093814.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_003093815.1 PFAM: Predicted permease YjgP/YjgQ family YP_003093817.1 PFAM: Aldo/keto reductase family YP_003093818.1 PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase YP_003093819.1 PFAM: Major Facilitator Superfamily YP_003093820.1 PFAM: short chain dehydrogenase YP_003093821.1 PFAM: Aldo/keto reductase family YP_003093822.1 PFAM: Kelch motif YP_003093823.1 PFAM: SMP-30/Gluconolaconase/LRE-like region YP_003093824.1 PFAM: Protein of unknown function (DUF1485); MlrC C-terminus YP_003093825.1 PFAM: Endoribonuclease L-PSP YP_003093826.1 PFAM: Dihydrodipicolinate synthetase family YP_003093827.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_003093828.1 PFAM: short chain dehydrogenase YP_003093829.1 PFAM: Succinylglutamate desuccinylase / Aspartoacylase family YP_003093831.1 PFAM: RagB, SusD and hypothetical proteins YP_003093832.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093833.1 PFAM: FCD domain; Bacterial regulatory proteins, gntR family YP_003093834.1 PFAM: Dihydrodipicolinate synthetase family YP_003093835.1 PFAM: GDSL-like Lipase/Acylhydrolase YP_003093838.1 PFAM: PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, TIM barrel domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase YP_003093839.1 PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family YP_003093840.1 PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily YP_003093841.1 PFAM: FAD dependent oxidoreductase YP_003093843.1 PFAM: Glycoside hydrolase 97 YP_003093848.1 PFAM: RagB, SusD and hypothetical proteins YP_003093849.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093850.1 PFAM: Bacterial regulatory proteins, gntR family YP_003093851.1 PFAM: Subtilase family YP_003093852.1 PFAM: Fic/DOC family YP_003093854.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase YP_003093855.1 PFAM: LemA family YP_003093856.1 PFAM: Domain of unknown function (DUF477) YP_003093857.1 PFAM: Domain of unknown function (DUF477) YP_003093858.1 PFAM: NUDIX domain YP_003093859.1 PFAM: Bacterial dnaA protein; Bacterial dnaA protein helix-turn-helix domain; TIGRFAM: chromosomal replication initiator protein DnaA YP_003093860.1 PFAM: Methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase N-terminal domain YP_003093862.1 PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein YP_003093863.1 PFAM: Predicted permease YP_003093864.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase YP_003093866.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: UDP-glucose-4-epimerase YP_003093867.1 PFAM: NAD dependent epimerase/dehydratase family YP_003093868.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; TIGRFAM: nucleotide sugar dehydrogenase YP_003093869.1 PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) YP_003093870.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_003093871.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_003093876.1 PFAM: TRAM domain; tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA YP_003093878.1 PFAM: Bacterial regulatory proteins, tetR family YP_003093880.1 PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit YP_003093881.1 PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase YP_003093883.1 PFAM: Papain family cysteine protease YP_003093884.1 PFAM: Rhodanese-like domain YP_003093885.1 PFAM: Y_Y_Y domain; Two component regulator propeller; Sigma-70, region 4 YP_003093886.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003093887.1 PFAM: RagB, SusD and hypothetical proteins YP_003093889.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2329) YP_003093890.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2329) YP_003093891.1 PFAM: Glycosyl hydrolase family 3 N terminal domain; Glycosyl hydrolase family 3 C terminal domain YP_003093895.1 PFAM: Domain of unknown function DUF28; TIGRFAM: hypothetical protein TIGR01033 YP_003093896.1 PFAM: NAD dependent epimerase/dehydratase family YP_003093898.1 PFAM: FAD dependent oxidoreductase; GMC oxidoreductase YP_003093899.1 PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold YP_003093900.1 PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel YP_003093901.1 PFAM: Cytochrome c YP_003093902.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003093903.1 PFAM: Domain of Unknown Function (DUF1080) YP_003093904.1 PFAM: Major Facilitator Superfamily; TIGRFAM: nucleoside transporter YP_003093905.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003093906.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence YP_003093907.1 PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) YP_003093908.1 PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family YP_003093909.1 PFAM: Glycosyl hydrolase family 20, catalytic domain YP_003093910.1 PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I YP_003093911.1 PFAM: DoxX YP_003093912.1 PFAM: Shikimate kinase YP_003093913.1 PFAM: Binding-protein-dependent transport system inner membrane component YP_003093914.1 PFAM: DoxX YP_003093915.1 PFAM: Domain of Unknown Function (DUF1599) YP_003093916.1 PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase YP_003093917.1 PFAM: DisA bacterial checkpoint controller nucleotide-binding; TIGRFAM: hypothetical protein TIGR00159 YP_003093921.1 PFAM: ATPase family associated with various cellular activities (AAA) YP_003093922.1 PFAM: Protein of unknown function (DUF1094) YP_003093923.1 PFAM: Uncharacterised protein family (UPF0187) YP_003093925.1 PFAM: His Kinase A (phosphoacceptor) domain; HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003093926.1 PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal YP_003093927.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_003093929.1 PFAM: Mechanosensitive ion channel YP_003093930.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_003093932.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine YP_003093933.1 PFAM: YceI-like domain YP_003093934.1 PFAM: Response regulator receiver domain YP_003093935.1 PFAM: Metallo-beta-lactamase superfamily YP_003093936.1 PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ YP_003093937.1 PFAM: ABC transporter YP_003093938.1 PFAM: GH3 auxin-responsive promoter YP_003093939.1 PFAM: CBS domain pair YP_003093940.1 PFAM: Peptidase family M13; Peptidase family M13 YP_003093941.1 PFAM: Bacterial transcription activator, effector binding domain YP_003093943.1 PFAM: Calcineurin-like phosphoesterase YP_003093944.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003093945.1 PFAM: FecR protein YP_003093946.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003093948.1 PFAM: Fatty acid hydroxylase superfamily YP_003093949.1 PFAM: Pirin C-terminal cupin domain; Pirin YP_003093951.1 PFAM: Cytochrome b5-like Heme/Steroid binding domain YP_003093952.1 PFAM: pfkB family carbohydrate kinase YP_003093953.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2200) YP_003093954.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003093955.1 PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; FAD binding domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase YP_003093957.1 PFAM: Bacterial regulatory proteins, tetR family YP_003093958.1 PFAM: Bacterial regulatory proteins, tetR family YP_003093959.1 PFAM: Outer membrane efflux protein YP_003093960.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003093961.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_003093963.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: dihydrolipoamide dehydrogenase YP_003093964.1 PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: hydrolase, CocE/NonD family YP_003093965.1 PFAM: Peptidase family M1 YP_003093966.1 PFAM: Protein of unknown function (DUF2490) YP_003093968.1 PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) YP_003093969.1 PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component YP_003093970.1 PFAM: MerR family regulatory protein YP_003093971.1 PFAM: FAD binding domain of DNA photolyase; DNA photolyase; TIGRFAM: cryptochrome, DASH family YP_003093972.1 PFAM: NAD dependent epimerase/dehydratase family; Domain of unknown function (DUF1731); TIGRFAM: hypothetical protein TIGR01777 YP_003093973.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003093974.1 PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase YP_003093975.1 PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain; Acyl-CoA dehydrogenase, middle domain YP_003093976.1 PFAM: Thiolase, N-terminal domain; Thiolase, C-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases YP_003093977.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain YP_003093978.1 PFAM: MarR family YP_003093983.1 PFAM: Thrombospondin type 3 repeat; OmpA family YP_003093984.1 PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase YP_003093985.1 PFAM: AMP-binding enzyme YP_003093987.1 PFAM: M61 glycyl aminopeptidase; PDZ domain (Also known as DHR or GLGF) YP_003093988.1 PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit YP_003093989.1 PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family YP_003093990.1 PFAM: Outer membrane efflux protein YP_003093997.1 PFAM: WD40-like Beta Propeller Repeat; OmpA family YP_003093999.1 PFAM: Ig domain YP_003094001.1 PFAM: Subtilase family YP_003094002.1 PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein ( transcriptional regulator) YP_003094004.1 PFAM: Sigma-54 interaction domain YP_003094005.1 PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003094006.1 PFAM: Patatin-like phospholipase YP_003094008.1 PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_003094009.1 PFAM: Major Facilitator Superfamily YP_003094011.1 PFAM: Cyclic nucleotide-binding domain YP_003094012.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; DJ-1/PfpI family YP_003094013.1 PFAM: Xylose isomerase-like TIM barrel YP_003094014.1 PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding proteins and sugar binding domain of the LacI family YP_003094015.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_003094016.1 PFAM: pfkB family carbohydrate kinase YP_003094017.1 PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain YP_003094018.1 PFAM: Branched-chain amino acid transport system / permease component YP_003094019.1 PFAM: ABC transporter YP_003094020.1 PFAM: Periplasmic binding proteins and sugar binding domain of the LacI family YP_003094021.1 PFAM: Glycerophosphoryl diester phosphodiesterase family YP_003094022.1 PFAM: Zinc-binding dehydrogenase; Alcohol dehydrogenase GroES-like domain; TIGRFAM: 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase YP_003094023.1 PFAM: Domain of unknown function (DUF303) YP_003094024.1 PFAM: Calcineurin-like phosphoesterase YP_003094025.1 PFAM: RagB, SusD and hypothetical proteins YP_003094026.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094029.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003094030.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_003094031.1 PFAM: GTPase of unknown function; TIGRFAM: GTP-binding hypothetical protein; GTP-binding protein Era; small GTP-binding protein domain YP_003094032.1 PFAM: PDZ domain (Also known as DHR or GLGF); Peptidase family S41; TIGRFAM: C-terminal peptidase (prc) YP_003094033.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_003094035.1 PFAM: Uncharacterised protein family UPF0005 YP_003094037.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_003094038.1 PFAM: Alpha-N-acetylglucosaminidase (NAGLU) YP_003094039.1 PFAM: Endonuclease/Exonuclease/phosphatase family YP_003094042.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003094043.1 PFAM: FecR protein YP_003094044.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003094045.1 PFAM: Aminotransferase class I and II YP_003094046.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_003094048.1 PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II YP_003094050.1 PFAM: Heparinase II/III-like protein YP_003094051.1 PFAM: Bacterial Ig-like domain (group 2) YP_003094052.1 PFAM: Homocysteine S-methyltransferase; Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; 5-methyltetrahydrofolate--homocysteine methyltransferase YP_003094053.1 PFAM: Methylenetetrahydrofolate reductase YP_003094054.1 PFAM: META domain YP_003094055.1 PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase YP_003094056.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_003094057.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_003094059.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_003094060.1 PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase YP_003094061.1 PFAM: MazG nucleotide pyrophosphohydrolase domain YP_003094062.1 PFAM: HIT domain YP_003094063.1 PFAM: Prokaryotic transcription elongation factor, GreA/GreB, N-terminal domain; Prokaryotic transcription elongation factor, GreA/GreB, C-terminal domain; TIGRFAM: transcription elongation factor GreA YP_003094064.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain YP_003094065.1 PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase YP_003094066.1 PFAM: Pyridoxal phosphate biosynthetic protein PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase YP_003094067.1 PFAM: Uncharacterized ACR, COG1399 YP_003094068.1 PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32 YP_003094069.1 PFAM: Fatty acid synthesis protein; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX YP_003094070.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III YP_003094071.1 PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_003094072.1 PFAM: ATP-grasp domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin carboxylase C-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase YP_003094073.1 PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC YP_003094074.1 PFAM: Ribose/Galactose Isomerase; TIGRFAM: sugar-phosphate isomerases, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B YP_003094075.1 PFAM: Peptidase family M20/M25/M40 YP_003094076.1 PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: 2[4Fe-4S] protein YP_003094077.1 PFAM: Transketolase, C-terminal domain; Dehydrogenase E1 component; Transketolase, pyrimidine binding domain YP_003094080.1 PFAM: GTPase of unknown function; Nucleoside recognition; Ferrous iron transport protein B; TIGRFAM: ferrous iron transporter FeoB; small GTP-binding protein domain; GTP-binding hypothetical protein YP_003094081.1 PFAM: FeoA domain YP_003094083.1 PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein YP_003094085.1 PFAM: RuvA N terminal domain; RuvA, C-terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit YP_003094086.1 PFAM: Phosphate acetyl/butaryl transferase; Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase YP_003094087.1 PFAM: LysM domain; Transglycosylase SLT domain YP_003094088.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_003094089.1 PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_003094090.1 PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family YP_003094091.1 PFAM: Peptidase family M23 YP_003094093.1 PFAM: Tetratricopeptide repeat YP_003094094.1 PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) YP_003094095.1 PFAM: MatE YP_003094096.1 PFAM: Acylphosphatase YP_003094097.1 PFAM: 2-nitropropane dioxygenase YP_003094098.1 PFAM: Amidohydrolase family YP_003094099.1 PFAM: HTH domain YP_003094100.1 PFAM: HxlR-like helix-turn-helix YP_003094101.1 PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003094102.1 PFAM: Domain of unknown function (DUF303) YP_003094103.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Cupin domain YP_003094104.1 PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_003094105.1 PFAM: Sulfatase YP_003094107.1 PFAM: S4 domain; RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family YP_003094108.1 PFAM: Radical SAM superfamily; TIGRFAM: radical SAM enzyme, Cfr family YP_003094109.1 PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein YP_003094111.1 PFAM: Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; TIGRFAM: PAS domain S-box YP_003094112.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_003094113.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003094114.1 PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family YP_003094115.1 PFAM: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) YP_003094116.1 PFAM: Polysaccharide lyase family 8, super-sandwich domain; Polysaccharide lyase family 8, N terminal alpha-helical domain; Polysaccharide lyase family 8, C-terminal beta-sandwich domain YP_003094117.1 PFAM: Glycosyl Hydrolase Family 88 YP_003094118.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003094119.1 PFAM: Glycosyl Hydrolase Family 88 YP_003094120.1 PFAM: Tetratricopeptide repeat YP_003094121.1 PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family YP_003094122.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain YP_003094124.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003094127.1 PFAM: RagB, SusD and hypothetical proteins YP_003094128.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094129.1 PFAM: RagB, SusD and hypothetical proteins YP_003094130.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003094134.1 PFAM: Bacterial regulatory proteins, gntR family YP_003094135.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain YP_003094136.1 PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype YP_003094137.1 PFAM: Class II Aldolase and Adducin N-terminal domain; short chain dehydrogenase; TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase YP_003094138.1 transports L-rhamnose and L-lyxose into the cell YP_003094139.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003094140.1 PFAM: Bacterial alpha-L-rhamnosidase; Alpha-L-rhamnosidase N-terminal domain YP_003094142.1 PFAM: Glycosyl transferase family 2 YP_003094143.1 PFAM: SLBB domain YP_003094144.1 PFAM: Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family YP_003094145.1 PFAM: Transcription termination factor nusG YP_003094146.1 PFAM: Glycosyl transferases group 1 YP_003094147.1 PFAM: ABC-2 type transporter YP_003094148.1 PFAM: ABC transporter YP_003094149.1 PFAM: Methyltransferase domain YP_003094150.1 PFAM: Polysaccharide deacetylase; Glycosyl transferase family 2 YP_003094151.1 PFAM: Glycosyl transferase family 2 YP_003094153.1 PFAM: Acyltransferase family YP_003094155.1 PFAM: Glycosyl transferases group 1 YP_003094158.1 PFAM: Glycosyl transferases group 1 YP_003094160.1 PFAM: Glycosyl transferases group 1 YP_003094161.1 PFAM: Glycosyl transferase family 2 YP_003094162.1 acetyltransferase believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit) YP_003094163.1 PFAM: Glycosyl transferase family 4 YP_003094164.1 PFAM: PAS fold; TIGRFAM: PAS domain S-box YP_003094166.1 PFAM: His Kinase A (phosphoacceptor) domain; CheB methylesterase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; TIGRFAM: PAS domain S-box; glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003094167.1 PFAM: GAF domain; PAS fold; Phytochrome region YP_003094168.1 PFAM: Heme oxygenase YP_003094170.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-4-dehydrorhamnose reductase YP_003094172.1 PFAM: CoA binding domain; Polysaccharide biosynthesis protein YP_003094173.1 PFAM: Bacterial sugar transferase YP_003094174.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003094176.1 PFAM: Glycosyl transferases group 1 YP_003094177.1 PFAM: NAD dependent epimerase/dehydratase family YP_003094178.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase YP_003094179.1 PFAM: Glycosyl transferases group 1 YP_003094180.1 PFAM: Glycosyl transferase family 2 YP_003094182.1 PFAM: NAD dependent epimerase/dehydratase family YP_003094183.1 PFAM: Glycosyl transferases group 1 YP_003094184.1 PFAM: Polysaccharide biosynthesis protein YP_003094187.1 PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit YP_003094188.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003094190.1 PFAM: Acetyltransferase (GNAT) family YP_003094192.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003094193.1 PFAM: Oxidoreductase family, NAD-binding Rossmann fold YP_003094194.1 PFAM: Cytidylyltransferase YP_003094195.1 PFAM: SAF domain; NeuB family YP_003094196.1 PFAM: Formyl transferase, C-terminal domain; Formyl transferase YP_003094199.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family YP_003094200.1 PFAM: Polysaccharide biosynthesis protein YP_003094201.1 PFAM: Chain length determinant protein YP_003094202.1 PFAM: SLBB domain; Polysaccharide biosynthesis/export protein YP_003094204.1 PFAM: Helix-turn-helix YP_003094205.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; TIGRFAM: nucleotide sugar dehydrogenase YP_003094213.1 PFAM: Carbon starvation protein CstA YP_003094216.1 PFAM: Glycosyl Hydrolase Family 88 YP_003094218.1 PFAM: RagB, SusD and hypothetical proteins YP_003094219.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094220.1 PFAM: FecR protein YP_003094221.1 PFAM: Sigma-70 region 2; Sigma-70, region 4; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003094222.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003094223.1 TIGRFAM: hypothetical protein ( transposase or invertase) YP_003094225.1 PFAM: F5/8 type C domain; Polysaccharide lyase family 8, N terminal alpha-helical domain; Polysaccharide lyase family 8, C-terminal beta-sandwich domain; Polysaccharide lyase family 8, super-sandwich domain YP_003094226.1 PFAM: Glycosyl hydrolases family 2, sugar binding domain YP_003094227.1 PFAM: Bacterial alpha-L-rhamnosidase YP_003094229.1 PFAM: Alpha-L-rhamnosidase N-terminal domain; Bacterial alpha-L-rhamnosidase YP_003094230.1 PFAM: Glycosyl hydrolases family 28 YP_003094231.1 PFAM: Glycosyl Hydrolase Family 88 YP_003094232.1 PFAM: Polysaccharide lyase family 8, super-sandwich domain; Polysaccharide lyase family 8, N terminal alpha-helical domain; Polysaccharide lyase family 8, C-terminal beta-sandwich domain YP_003094233.1 PFAM: RagB, SusD and hypothetical proteins YP_003094234.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094235.1 PFAM: Bacterial alpha-L-rhamnosidase YP_003094236.1 PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) YP_003094237.1 PFAM: Domain of unknown function (DUF377) YP_003094238.1 PFAM: Major Facilitator Superfamily; TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter YP_003094239.1 PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family YP_003094240.1 PFAM: AhpC/TSA family YP_003094241.1 PFAM: RagB, SusD and hypothetical proteins YP_003094242.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094243.1 PFAM: FecR protein YP_003094244.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, Bacteroides expansion family 1; RNA polymerase sigma factor, sigma-70 family YP_003094245.1 PFAM: AhpC/TSA family YP_003094246.1 PFAM: AhpC/TSA family YP_003094247.1 PFAM: F5/8 type C domain; Domain of unknown function (DUF1735) YP_003094248.1 PFAM: RagB, SusD and hypothetical proteins YP_003094249.1 PFAM: Secretin and TonB N terminus short domain; TonB-dependent Receptor Plug Domain YP_003094250.1 PFAM: FecR protein YP_003094251.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003094252.1 PFAM: Formyl transferase; ACT domain; TIGRFAM: formyltetrahydrofolate deformylase; phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent YP_003094253.1 PFAM: Integral membrane protein DUF6 YP_003094254.1 PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: GDP-mannose 4,6-dehydratase YP_003094257.1 PFAM: Domain of unknown function (DUF377) YP_003094258.1 PFAM: RagB, SusD and hypothetical proteins YP_003094259.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094260.1 TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003094261.1 PFAM: Two component regulator propeller; Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Y_Y_Y domain YP_003094262.1 PFAM: Redoxin YP_003094263.1 PFAM: RagB, SusD and hypothetical proteins YP_003094264.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094265.1 PFAM: FecR protein YP_003094266.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, Bacteroides expansion family 1 YP_003094267.1 PFAM: Creatinase/Prolidase N-terminal domain; metallopeptidase family M24 YP_003094268.1 PFAM: short chain dehydrogenase YP_003094269.1 PFAM: Amidohydrolase YP_003094270.1 PFAM: Fumarylacetoacetate (FAA) hydrolase family YP_003094271.1 PFAM: short chain dehydrogenase YP_003094272.1 PFAM: D-galactarate dehydratase / Altronate hydrolase, C terminus; SAF domain YP_003094273.1 PFAM: Protein of unknown function (DUF718) YP_003094274.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; L-fucose:H+ symporter permease YP_003094275.1 PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form YP_003094278.1 PFAM: Protein of unknown function (DUF2480) YP_003094279.1 PFAM: PPIC-type PPIASE domain YP_003094282.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_003094284.1 TIGRFAM: hypothetical protein YP_003094285.1 PFAM: Calcineurin-like phosphoesterase YP_003094286.1 PFAM: Bacterial membrane protein YfhO YP_003094288.1 PFAM: Uncharacterized conserved protein (DUF2196) YP_003094289.1 PFAM: Type III restriction enzyme, res subunit; Helicase conserved C-terminal domain; UvrB/uvrC motif; TIGRFAM: excinuclease ABC, B subunit YP_003094291.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_003094292.1 PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; HAD superfamily (subfamily IA) hydrolase, TIGR02254 YP_003094293.1 PFAM: MatE YP_003094297.1 PFAM: Rhomboid family YP_003094298.1 PFAM: Methyltransferase domain YP_003094299.1 PFAM: Bacterial transferase hexapeptide (three repeats) YP_003094300.1 PFAM: Glycosyl transferases group 1 YP_003094301.1 PFAM: Glycosyl transferase family 2 YP_003094302.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_003094303.1 PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; GTP-binding protein TypA/BipA YP_003094304.1 PFAM: esterase YP_003094306.1 ATP-dependent carboxylate-amine ligase YP_003094310.1 PFAM: Cyclic nucleotide-binding domain YP_003094311.1 PFAM: YceI-like domain YP_003094312.1 PFAM: Pirin; Pirin C-terminal cupin domain YP_003094313.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_003094315.1 PFAM: Domain of unknown function (DUF323) YP_003094316.1 PFAM: Biotin-requiring enzyme YP_003094318.1 PFAM: RNA methyltransferase; TIGRFAM: hypothetical protein TIGR00046 YP_003094319.1 PFAM: CBS domain pair; Domain of unknown function DUF21; Transporter associated domain YP_003094320.1 PFAM: Inorganic pyrophosphatase YP_003094321.1 PFAM: SNARE associated Golgi protein YP_003094322.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N YP_003094323.1 PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M YP_003094324.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L YP_003094325.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L YP_003094326.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_003094327.1 PFAM: 4Fe-4S binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain I YP_003094328.1 PFAM: NADH dehydrogenase YP_003094329.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region YP_003094330.1 PFAM: SLBB domain; Respiratory-chain NADH dehydrogenase 51 Kd subunit; NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; TIGRFAM: NADH-quinone oxidoreductase, F subunit YP_003094331.1 PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit YP_003094332.1 PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit YP_003094333.1 PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C YP_003094334.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_003094335.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_003094336.1 PFAM: Tetratricopeptide repeat YP_003094339.1 PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain YP_003094341.1 PFAM: Biopolymer transport protein ExbD/TolR YP_003094342.1 PFAM: Biopolymer transport protein ExbD/TolR YP_003094343.1 PFAM: MotA/TolQ/ExbB proton channel family YP_003094344.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_003094345.1 PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, , prokaryotic YP_003094346.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: conserved protein of unknown function cotranscribed with Bmr (bmrU) YP_003094347.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003094350.1 PFAM: Glycosyl Hydrolase Family 88 YP_003094351.1 PFAM: F5/8 type C domain YP_003094352.1 PFAM: F5/8 type C domain YP_003094353.1 PFAM: RagB, SusD and hypothetical proteins YP_003094354.1 PFAM: TonB-dependent Receptor Plug Domain YP_003094355.1 PFAM: Peptidase family M28 YP_003094356.1 PFAM: Uncharacterized protein conserved in bacteria (DUF2264) YP_003094357.1 PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain YP_003094358.1 PFAM: RagB, SusD and hypothetical proteins YP_003094359.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003094363.1 PFAM: Methyltransferase domain YP_003094364.1 PFAM: Bacterial regulatory proteins, lacI family YP_003094365.1 PFAM: Tetratricopeptide repeat YP_003094366.1 PFAM: Phytanoyl-CoA dioxygenase (PhyH) YP_003094367.1 PFAM: Xylose isomerase-like TIM barrel YP_003094368.1 PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter YP_003094370.1 PFAM: RF-1 domain; PCRF domain; TIGRFAM: peptide chain release factor 1 YP_003094371.1 PFAM: Calcineurin-like phosphoesterase; TIGRFAM: UDP-2,3-diacylglucosamine hydrolase YP_003094372.1 PFAM: Pyridine nucleotide-disulphide oxidoreductase YP_003094373.1 PFAM: 2Fe-2S iron-sulfur cluster binding domain YP_003094374.1 PFAM: PDZ domain (Also known as DHR or GLGF); Peptidase family S41; TIGRFAM: C-terminal peptidase (prc) YP_003094376.1 PFAM: Uncharacterised BCR, COG1649 YP_003094378.1 PFAM: RagB, SusD and hypothetical proteins YP_003094379.1 PFAM: TonB-dependent Receptor Plug Domain YP_003094380.1 PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family YP_003094384.1 PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain YP_003094385.1 PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family YP_003094390.1 PFAM: Bacterial regulatory proteins, luxR family YP_003094391.1 PFAM: RagB, SusD and hypothetical proteins YP_003094392.1 PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor YP_003094393.1 PFAM: DeoR-like helix-turn-helix domain; Bacterial regulatory proteins, deoR family YP_003094394.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_003094395.1 PFAM: GlcNAc-PI de-N-acetylase; Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: glucosamine-6-phosphate isomerase YP_003094396.1 PFAM: Uncharacterized conserved protein (DUF2261) YP_003094397.1 PFAM: Insulinase (Peptidase family M16); Peptidase M16 inactive domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type YP_003094398.1 PFAM: Fibronectin type III domain; Uncharacterised BCR, COG1649 YP_003094400.1 PFAM: His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003094401.1 PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase YP_003094402.1 PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I YP_003094403.1 PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase/QueD family protein YP_003094404.1 PFAM: Phosphorylase superfamily YP_003094405.1 PFAM: Uncharacterized ACR, COG2107 YP_003094407.1 PFAM: Predicted permease YP_003094408.1 PFAM: Metallo-beta-lactamase superfamily YP_003094410.1 PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase YP_003094411.1 PFAM: (2R)-phospho-3-sulfolactate synthase (ComA) YP_003094412.1 PFAM: Tetratricopeptide repeat; Tetratricopeptide repeat YP_003094414.1 PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain YP_003094415.1 PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase YP_003094416.1 PFAM: Uncharacterized conserved protein (DUF2183) YP_003094417.1 PFAM: Diacylglycerol kinase catalytic domain; TIGRFAM: conserved protein of unknown function cotranscribed with Bmr (bmrU) YP_003094418.1 TIGRFAM: TonB family C-terminal domain YP_003094419.1 PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A YP_003094420.1 PFAM: GTPase of unknown function; TIGRFAM: GTP-binding hypothetical protein; small GTP-binding protein domain; GTP-binding proten HflX YP_003094421.1 PFAM: Indole-3-glycerol phosphate synthase YP_003094422.1 PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase YP_003094423.1 PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme YP_003094426.1 PFAM: Domain of unknown function (DU1801) YP_003094427.1 PFAM: Amidohydrolase family; Amidohydrolase family YP_003094428.1 PFAM: Amidohydrolase family YP_003094429.1 PFAM: AsnC family YP_003094430.1 PFAM: S1 RNA binding domain; Tex-like protein N-terminal domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region YP_003094431.1 PFAM: Transketolase, pyrimidine binding domain; Transketolase, C-terminal domain YP_003094433.1 PFAM: UvrD/REP helicase YP_003094434.1 PFAM: ThiF family YP_003094435.1 PFAM: TatD related DNase YP_003094436.1 PFAM: Glycosyl hydrolase family 3 N terminal domain YP_003094440.1 PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase YP_003094441.1 PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins YP_003094442.1 PFAM: Response regulator receiver domain; LytTr DNA-binding domain YP_003094443.1 PFAM: Pyruvate kinase, alpha/beta domain; Pyruvate kinase, barrel domain; TIGRFAM: pyruvate kinase YP_003094445.1 carries the fatty acid chain in fatty acid biosynthesis YP_003094446.1 PFAM: Beta-ketoacyl synthase, C-terminal domain; Beta-ketoacyl synthase, N-terminal domain; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2 YP_003094447.1 PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial YP_003094449.1 PFAM: Domain of unknown function (DUF1732); YicC-like family, N-terminal region; TIGRFAM: hypothetical protein TIGR00255 YP_003094450.1 PFAM: Guanylate kinase; TIGRFAM: guanylate kinase YP_003094451.1 PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase YP_003094452.1 PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: hypothetical protein TIGR00096 YP_003094454.1 PFAM: Elongation factor Tu GTP binding domain; TIGRFAM: peptide chain release factor 3; small GTP-binding protein domain YP_003094455.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_003094456.1 PFAM: Peptidase family M20/M25/M40 YP_003094457.1 PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase YP_003094458.1 PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase YP_003094459.1 PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain YP_003094460.1 PFAM: Aminotransferase class-III YP_003094461.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_003094462.1 PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase YP_003094464.1 PFAM: FAD dependent oxidoreductase YP_003094465.1 PFAM: Uncharacterised BCR, YbaB family COG0718 YP_003094466.1 PFAM: Metallo-beta-lactamase superfamily YP_003094467.1 PFAM: 3'-5' exonuclease; DNA polymerase family A; 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; TIGRFAM: DNA polymerase I YP_003094469.1 PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I YP_003094470.1 PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase YP_003094471.1 PFAM: methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase YP_003094472.1 PFAM: NAD dependent epimerase/dehydratase family YP_003094473.1 PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family YP_003094474.1 PFAM: Iron/manganese superoxide dismutases, C-terminal domain; Iron/manganese superoxide dismutases, alpha-hairpin domain YP_003094475.1 PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region YP_003094476.1 PFAM: tRNA binding domain; TIGRFAM: export-related chaperone CsaA YP_003094477.1 PFAM: LysE type translocator YP_003094480.1 PFAM: Sugar (and other) transporter YP_003094482.1 PFAM: Integral membrane protein TerC family YP_003094485.1 PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family YP_003094486.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_003094490.1 PFAM: Domain of unknown function DUF20 YP_003094491.1 PFAM: Sigma-54 interaction domain YP_003094492.1 PFAM: Enoyl-CoA hydratase/isomerase family YP_003094493.1 PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain YP_003094494.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003094495.1 PFAM: N-acetylmuramoyl-L-alanine amidase YP_003094497.1 PFAM: Response regulator receiver domain YP_003094498.1 PFAM: CheB methylesterase YP_003094499.1 PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain YP_003094500.1 PFAM: Response regulator receiver domain YP_003094501.1 PFAM: CHASE3 domain; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain YP_003094502.1 PFAM: His Kinase A (phosphoacceptor) domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase YP_003094503.1 PFAM: neutral zinc metallopeptidase YP_003094504.1 PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family YP_003094505.1 PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain YP_003094507.1 PFAM: Cyclic nucleotide-binding domain YP_003094508.1 PFAM: Small Multidrug Resistance protein YP_003094511.1 PFAM: Glycosyl hydrolase family 9 YP_003094512.1 PFAM: Bacterial regulatory proteins, tetR family YP_003094513.1 PFAM: Outer membrane efflux protein YP_003094514.1 PFAM: HlyD family secretion protein YP_003094515.1 PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily YP_003094516.1 PFAM: Phosphoenolpyruvate carboxylase YP_003094518.1 PFAM: Thioredoxin YP_003094519.1 PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family YP_003094521.1 PFAM: Aldehyde dehydrogenase family YP_003094522.1 PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase YP_003094523.1 PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD YP_003094524.1 PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III (xth); exodeoxyribonuclease III YP_003094525.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_003094526.1 PFAM: Arginase family YP_003094527.1 PFAM: OmpA family YP_003094528.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase YP_003094529.1 PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) OB domain; Elongation factor P (EF-P) KOW-like domain; TIGRFAM: translation elongation factor P YP_003094530.1 PFAM: ABC transporter YP_003094531.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_003094532.1 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis YP_003094533.1 PFAM: Bacterial transferase hexapeptide (three repeats); UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003094534.1 PFAM: HD domain YP_003094535.1 PFAM: PglZ domain; Response regulator receiver domain YP_003094536.1 PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: conserved hypothetical nucleotide-binding protein YP_003094537.1 PFAM: Alanine dehydrogenase/PNT, N-terminal domain; Alanine dehydrogenase/PNT, C-terminal domain; TIGRFAM: alanine dehydrogenase YP_003094538.1 PFAM: D-ala-D-ala dipeptidase YP_003094539.1 PFAM: Aminotransferase class I and II YP_003094540.1 PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family