-- dump date 20140619_233106 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002016977.1 194335183 6461738 1..1464 1 NC_011060.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1464 dnaA 6461738 dnaA Pelodictyon phaeoclathratiforme BU-1 chromosomal replication initiation protein YP_002016977.1 1 D 324925 CDS YP_002016978.1 194335184 6463180 1746..2870 1 NC_011060.1 KEGG: plt:Plut_0001 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2870 6463180 Ppha_0002 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase III subunit beta YP_002016978.1 1746 D 324925 CDS YP_002016979.1 194335185 6462811 2883..3992 1 NC_011060.1 TIGRFAM: DNA replication and repair protein RecF; KEGG: pvi:Cvib_0003 DNA replication and repair protein RecF; DNA replication and repair protein RecF 3992 6462811 Ppha_0003 Pelodictyon phaeoclathratiforme BU-1 DNA replication and repair protein RecF YP_002016979.1 2883 D 324925 CDS YP_002016980.1 194335186 6462455 3995..4288 1 NC_011060.1 KEGG: plt:Plut_0003 hypothetical protein; hypothetical protein 4288 6462455 Ppha_0004 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002016980.1 3995 D 324925 CDS YP_002016981.1 194335187 6463177 complement(4331..5554) 1 NC_011060.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: pvi:Cvib_0005 beta-lactamase domain protein; beta-lactamase domain-containing protein 5554 6463177 Ppha_0005 Pelodictyon phaeoclathratiforme BU-1 beta-lactamase domain-containing protein YP_002016981.1 4331 R 324925 CDS YP_002016982.1 194335188 6463462 complement(5681..8116) 1 NC_011060.1 PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cph:Cpha266_0027 DNA polymerase B region; DNA polymerase B region 8116 6463462 Ppha_0006 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase B region YP_002016982.1 5681 R 324925 CDS YP_002016983.1 194335189 6462807 complement(8136..10001) 1 NC_011060.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 10001 6462807 Ppha_0007 Pelodictyon phaeoclathratiforme BU-1 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_002016983.1 8136 R 324925 CDS YP_002016984.1 194335190 6463170 10049..10165 1 NC_011060.1 hypothetical protein 10165 6463170 Ppha_0008 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002016984.1 10049 D 324925 CDS YP_002016985.1 194335191 6462803 10466..10903 1 NC_011060.1 KEGG: cph:Cpha266_0029 thiosulfate-binding protein SoxY; thiosulfate-binding protein SoxY 10903 6462803 Ppha_0009 Pelodictyon phaeoclathratiforme BU-1 thiosulfate-binding protein SoxY YP_002016985.1 10466 D 324925 CDS YP_002016986.1 194335192 6463168 10928..11236 1 NC_011060.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: cph:Cpha266_0030 sulfur oxidation protein SoxZ; sulfur oxidation protein SoxZ 11236 6463168 Ppha_0010 Pelodictyon phaeoclathratiforme BU-1 sulfur oxidation protein SoxZ YP_002016986.1 10928 D 324925 CDS YP_002016987.1 194335193 6462796 11297..11671 1 NC_011060.1 PFAM: cytochrome c class I; KEGG: cph:Cpha266_0031 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit; cytochrome c class I 11671 6462796 Ppha_0011 Pelodictyon phaeoclathratiforme BU-1 cytochrome c class I YP_002016987.1 11297 D 324925 CDS YP_002016988.1 194335194 6463161 11686..12978 1 NC_011060.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0032 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; Flavocytochrome c sulfide dehydrogenase 12978 6463161 Ppha_0012 Pelodictyon phaeoclathratiforme BU-1 Flavocytochrome c sulfide dehydrogenase YP_002016988.1 11686 D 324925 CDS YP_002016989.1 194335195 6462790 13137..15011 1 NC_011060.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 15011 secD 6462790 secD Pelodictyon phaeoclathratiforme BU-1 preprotein translocase subunit SecD YP_002016989.1 13137 D 324925 CDS YP_002016990.1 194335196 6462169 15033..15968 1 NC_011060.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 15968 secF 6462169 secF Pelodictyon phaeoclathratiforme BU-1 preprotein translocase subunit SecF YP_002016990.1 15033 D 324925 CDS YP_002016991.1 194335197 6462789 16068..17384 1 NC_011060.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pvi:Cvib_0012 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain 17384 6462789 Ppha_0015 Pelodictyon phaeoclathratiforme BU-1 SurA domain YP_002016991.1 16068 D 324925 CDS YP_002016992.1 194335198 6463156 complement(17373..19322) 1 NC_011060.1 KEGG: cch:Cag_0029 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 19322 6463156 Ppha_0016 Pelodictyon phaeoclathratiforme BU-1 DNA gyrase subunit B YP_002016992.1 17373 R 324925 CDS YP_002016993.1 194335199 6462786 complement(19407..19793) 1 NC_011060.1 PFAM: protein of unknown function UPF0102; KEGG: cph:Cpha266_0037 hypothetical protein; hypothetical protein 19793 6462786 Ppha_0017 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002016993.1 19407 R 324925 CDS YP_002016994.1 194335200 6463147 complement(19790..20410) 1 NC_011060.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 20410 rnhB 6463147 rnhB Pelodictyon phaeoclathratiforme BU-1 ribonuclease HII YP_002016994.1 19790 R 324925 CDS YP_002016995.1 194335201 6462784 complement(20484..21158) 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1465 hypothetical protein; hypothetical protein 21158 6462784 Ppha_0019 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002016995.1 20484 R 324925 CDS YP_002016996.1 194335202 6463134 complement(21238..21555) 1 NC_011060.1 PFAM: HicB family protein; KEGG: cph:Cpha266_2191 HicB family protein; HicB family protein 21555 6463134 Ppha_0020 Pelodictyon phaeoclathratiforme BU-1 HicB family protein YP_002016996.1 21238 R 324925 CDS YP_002016997.1 194335203 6462782 complement(21542..21808) 1 NC_011060.1 KEGG: cph:Cpha266_2192 HicA protein; HicA protein 21808 6462782 Ppha_0021 Pelodictyon phaeoclathratiforme BU-1 HicA protein YP_002016997.1 21542 R 324925 CDS YP_002016998.1 194335204 6463122 complement(22188..22418) 1 NC_011060.1 hypothetical protein 22418 6463122 Ppha_0024 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002016998.1 22188 R 324925 CDS YP_002016999.1 194335205 6463104 22598..24286 1 NC_011060.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cph:Cpha266_0040 ribonuclease, Rne/Rng family; ribonuclease, Rne/Rng family 24286 6463104 Ppha_0025 Pelodictyon phaeoclathratiforme BU-1 ribonuclease, Rne/Rng family YP_002016999.1 22598 D 324925 CDS YP_002017000.1 194335206 6462778 24313..25176 1 NC_011060.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 25176 dapD 6462778 dapD Pelodictyon phaeoclathratiforme BU-1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase YP_002017000.1 24313 D 324925 CDS YP_002017001.1 194335207 6462772 25181..26938 1 NC_011060.1 KEGG: plt:Plut_0014 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 26938 6462772 Ppha_0027 Pelodictyon phaeoclathratiforme BU-1 carboxyl-terminal protease YP_002017001.1 25181 D 324925 CDS YP_002017002.1 194335208 6463079 complement(26929..27615) 1 NC_011060.1 KEGG: cch:Cag_0034 hypothetical protein; hypothetical protein 27615 6463079 Ppha_0028 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017002.1 26929 R 324925 CDS YP_002017003.1 194335209 6462771 complement(27616..28758) 1 NC_011060.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cch:Cag_0035 geranylgeranyl reductase; geranylgeranyl reductase 28758 6462771 Ppha_0029 Pelodictyon phaeoclathratiforme BU-1 geranylgeranyl reductase YP_002017003.1 27616 R 324925 CDS YP_002017004.1 194335210 6462767 complement(28762..30237) 1 NC_011060.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 30237 6462767 Ppha_0030 Pelodictyon phaeoclathratiforme BU-1 glycyl-tRNA synthetase YP_002017004.1 28762 R 324925 CDS YP_002017005.1 194335211 6463071 30497..30862 1 NC_011060.1 PFAM: DsrE family protein; KEGG: cch:Cag_1216 hypothetical protein; DsrE family protein 30862 6463071 Ppha_0031 Pelodictyon phaeoclathratiforme BU-1 DsrE family protein YP_002017005.1 30497 D 324925 CDS YP_002017006.1 194335212 6463060 complement(30963..31736) 1 NC_011060.1 PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein; hypothetical protein 31736 6463060 Ppha_0032 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017006.1 30963 R 324925 CDS YP_002017007.1 194335213 6462765 complement(31720..31908) 1 NC_011060.1 hypothetical protein 31908 6462765 Ppha_0033 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017007.1 31720 R 324925 CDS YP_002017008.1 194335214 6463044 31945..32229 1 NC_011060.1 KEGG: cch:Cag_1214 hypothetical protein; hypothetical protein 32229 6463044 Ppha_0034 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017008.1 31945 D 324925 CDS YP_002017009.1 194335215 6462764 complement(32299..33480) 1 NC_011060.1 KEGG: cch:Cag_1582 heterodisulfide reductase; heterodisulfide reductase 33480 6462764 Ppha_0035 Pelodictyon phaeoclathratiforme BU-1 heterodisulfide reductase YP_002017009.1 32299 R 324925 CDS YP_002017010.1 194335216 6463029 complement(33575..35827) 1 NC_011060.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; FAD dependent oxidoreductase; KEGG: cch:Cag_1583 heterodisulfide reductase, subunit A/hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase subunit delta 35827 6463029 Ppha_0036 Pelodictyon phaeoclathratiforme BU-1 methyl-viologen-reducing hydrogenase subunit delta YP_002017010.1 33575 R 324925 CDS YP_002017011.1 194335217 6462076 complement(35831..37072) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_1584 heterodisulfide reductase, subunit A; 4Fe-4S ferredoxin 37072 6462076 Ppha_0037 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002017011.1 35831 R 324925 CDS YP_002017012.1 194335218 6462762 complement(37145..37237) 1 NC_011060.1 hypothetical protein 37237 6462762 Ppha_0038 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017012.1 37145 R 324925 CDS YP_002017013.1 194335219 6462755 complement(37237..39213) 1 NC_011060.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 39213 6462755 Ppha_0039 Pelodictyon phaeoclathratiforme BU-1 adenylylsulfate reductase subunit alpha YP_002017013.1 37237 R 324925 CDS YP_002017014.1 194335220 6462746 complement(39242..39664) 1 NC_011060.1 TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0864 adenylylsulfate reductase, subunit B; adenylylsulfate reductase subunit beta 39664 6462746 Ppha_0040 Pelodictyon phaeoclathratiforme BU-1 adenylylsulfate reductase subunit beta YP_002017014.1 39242 R 324925 CDS YP_002017015.1 194335221 6463008 complement(39791..41002) 1 NC_011060.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 41002 sat 6463008 sat Pelodictyon phaeoclathratiforme BU-1 sulfate adenylyltransferase YP_002017015.1 39791 R 324925 CDS YP_002017016.1 194335222 6462985 complement(41661..42779) 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cte:CT0845 hypothetical protein; hypothetical protein 42779 6462985 Ppha_0042 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017016.1 41661 R 324925 CDS YP_002017017.1 194335223 6462737 42838..43029 1 NC_011060.1 hypothetical protein 43029 6462737 Ppha_0043 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017017.1 42838 D 324925 CDS YP_002017018.1 194335224 6461709 43098..43583 1 NC_011060.1 KEGG: ccr:CC_3052 hypothetical protein; hypothetical protein 43583 6461709 Ppha_0044 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017018.1 43098 D 324925 CDS YP_002017019.1 194335225 6462976 complement(43608..43925) 1 NC_011060.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cph:Cpha266_0046 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 43925 6462976 Ppha_0045 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent Clp protease adaptor protein ClpS YP_002017019.1 43608 R 324925 CDS YP_002017020.1 194335226 6462734 complement(43991..44959) 1 NC_011060.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cph:Cpha266_0047 muramoyltetrapeptide carboxypeptidase; Muramoyltetrapeptide carboxypeptidase 44959 6462734 Ppha_0046 Pelodictyon phaeoclathratiforme BU-1 Muramoyltetrapeptide carboxypeptidase YP_002017020.1 43991 R 324925 CDS YP_002017021.1 194335227 6462729 complement(45005..45271) 1 NC_011060.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: pvi:Cvib_0024 H+-transporting two-sector ATPase, delta/epsilon subunit; H+transporting two-sector ATPase aubunit delta/epsilon 45271 6462729 Ppha_0047 Pelodictyon phaeoclathratiforme BU-1 H+transporting two-sector ATPase aubunit delta/epsilon YP_002017021.1 45005 R 324925 CDS YP_002017022.1 194335228 6462964 complement(45287..46675) 1 NC_011060.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 46675 6462964 Ppha_0048 Pelodictyon phaeoclathratiforme BU-1 F0F1 ATP synthase subunit beta YP_002017022.1 45287 R 324925 CDS YP_002017023.1 194335229 6462956 47024..47566 1 NC_011060.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: pvi:Cvib_0026 redoxin domain protein; redoxin domain-containing protein 47566 6462956 Ppha_0049 Pelodictyon phaeoclathratiforme BU-1 redoxin domain-containing protein YP_002017023.1 47024 D 324925 CDS YP_002017024.1 194335230 6462941 47709..49562 1 NC_011060.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 49562 6462941 Ppha_0050 Pelodictyon phaeoclathratiforme BU-1 phosphoenolpyruvate carboxykinase YP_002017024.1 47709 D 324925 CDS YP_002017025.1 194335231 6462717 complement(49631..49843) 1 NC_011060.1 PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein; hypothetical protein 49843 6462717 Ppha_0051 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017025.1 49631 R 324925 CDS YP_002017026.1 194335232 6462934 complement(49930..50814) 1 NC_011060.1 PFAM: zinc finger SWIM domain protein; KEGG: cph:Cpha266_1236 zinc finger, SWIM domain protein; zinc finger SWIM domain-containing protein 50814 6462934 Ppha_0052 Pelodictyon phaeoclathratiforme BU-1 zinc finger SWIM domain-containing protein YP_002017026.1 49930 R 324925 CDS YP_002017027.1 194335233 6461759 complement(50820..53843) 1 NC_011060.1 KEGG: cph:Cpha266_1235 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase 53843 6461759 Ppha_0053 Pelodictyon phaeoclathratiforme BU-1 Non-specific serine/threonine protein kinase YP_002017027.1 50820 R 324925 CDS YP_002017028.1 194335234 6462919 complement(53944..54087) 1 NC_011060.1 hypothetical protein 54087 6462919 Ppha_0054 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017028.1 53944 R 324925 CDS YP_002017029.1 194335235 6462711 complement(54217..54762) 1 NC_011060.1 KEGG: fgr:FG06081.1 hypothetical protein; hypothetical protein 54762 6462711 Ppha_0055 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017029.1 54217 R 324925 CDS YP_002017030.1 194335236 6462907 55025..56326 1 NC_011060.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: plt:Plut_0053 transporter; major facilitator superfamily protein 56326 6462907 Ppha_0056 Pelodictyon phaeoclathratiforme BU-1 major facilitator superfamily protein YP_002017030.1 55025 D 324925 CDS YP_002017031.1 194335237 6462706 complement(56330..57310) 1 NC_011060.1 KEGG: cph:Cpha266_0071 helix-turn-helix domain protein; XRE family transcriptional regulator 57310 6462706 Ppha_0057 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017031.1 56330 R 324925 CDS YP_002017032.1 194335238 6462896 complement(57264..57695) 1 NC_011060.1 KEGG: cph:Cpha266_0072 hypothetical protein; hypothetical protein 57695 6462896 Ppha_0058 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017032.1 57264 R 324925 CDS YP_002017033.1 194335239 6462700 58431..59144 1 NC_011060.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: cte:CT2274 hypothetical protein; yecA family protein 59144 6462700 Ppha_0060 Pelodictyon phaeoclathratiforme BU-1 yecA family protein YP_002017033.1 58431 D 324925 CDS YP_002017034.1 194335240 6462884 complement(59264..59488) 1 NC_011060.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein; addiction module protein 59488 6462884 Ppha_0061 Pelodictyon phaeoclathratiforme BU-1 addiction module protein YP_002017034.1 59264 R 324925 CDS YP_002017035.1 194335241 6462694 complement(60144..61208) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mae:Maeo_0832 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin 61208 6462694 Ppha_0062 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002017035.1 60144 R 324925 CDS YP_002017036.1 194335242 6462698 complement(61859..63478) 1 NC_011060.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0093 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter 63478 6462698 Ppha_0063 Pelodictyon phaeoclathratiforme BU-1 EmrB/QacA subfamily drug resistance transporter YP_002017036.1 61859 R 324925 CDS YP_002017037.1 194335243 6462876 complement(63500..64540) 1 NC_011060.1 PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0094 secretion protein HlyD family protein; secretion protein HlyD family protein 64540 6462876 Ppha_0064 Pelodictyon phaeoclathratiforme BU-1 secretion protein HlyD family protein YP_002017037.1 63500 R 324925 CDS YP_002017038.1 194335244 6462693 complement(64527..64958) 1 NC_011060.1 PFAM: UspA domain protein; KEGG: cph:Cpha266_0095 UspA domain protein; UspA domain-containing protein 64958 6462693 Ppha_0065 Pelodictyon phaeoclathratiforme BU-1 UspA domain-containing protein YP_002017038.1 64527 R 324925 CDS YP_002017039.1 194335245 6462868 complement(64960..66291) 1 NC_011060.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0096 outer membrane efflux protein; outer membrane efflux protein 66291 6462868 Ppha_0066 Pelodictyon phaeoclathratiforme BU-1 outer membrane efflux protein YP_002017039.1 64960 R 324925 CDS YP_002017040.1 194335246 6462692 66499..68598 1 NC_011060.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_0097 DNA-binding protein fis / transcriptional regulator, Fis family; NifA subfamily transcriptional regulator 68598 6462692 Ppha_0067 Pelodictyon phaeoclathratiforme BU-1 NifA subfamily transcriptional regulator YP_002017040.1 66499 D 324925 CDS YP_002017041.1 194335247 6462864 complement(68635..69828) 1 NC_011060.1 PFAM: aminotransferase class I and II; KEGG: cph:Cpha266_1972 transcriptional regulator, GntR family; GntR family transcriptional regulator 69828 6462864 Ppha_0068 Pelodictyon phaeoclathratiforme BU-1 GntR family transcriptional regulator YP_002017041.1 68635 R 324925 CDS YP_002017042.1 194335248 6462684 complement(69838..70266) 1 NC_011060.1 PFAM: amino acid-binding ACT domain protein; KEGG: cph:Cpha266_1971 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 70266 6462684 Ppha_0069 Pelodictyon phaeoclathratiforme BU-1 amino acid-binding ACT domain-containing protein YP_002017042.1 69838 R 324925 CDS YP_002017043.1 194335249 6462855 70760..72106 1 NC_011060.1 PFAM: peptidase M12A astacin; SMART: peptidase metallopeptidase; KEGG: cph:Cpha266_0056 peptidase M12A, astacin; peptidase M12A astacin 72106 6462855 Ppha_0070 Pelodictyon phaeoclathratiforme BU-1 peptidase M12A astacin YP_002017043.1 70760 D 324925 CDS YP_002017044.1 194335250 6462680 72179..73465 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0055 radical SAM protein; radical SAM protein 73465 6462680 Ppha_0071 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017044.1 72179 D 324925 CDS YP_002017045.1 194335251 6462850 73517..73879 1 NC_011060.1 KEGG: cph:Cpha266_0054 hypothetical protein; hypothetical protein 73879 6462850 Ppha_0072 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017045.1 73517 D 324925 CDS YP_002017046.1 194335252 6462677 complement(73894..75195) 1 NC_011060.1 KEGG: cph:Cpha266_1968 phenylacetate-CoA ligase; phenylacetate--CoA ligase 75195 6462677 Ppha_0073 Pelodictyon phaeoclathratiforme BU-1 phenylacetate--CoA ligase YP_002017046.1 73894 R 324925 CDS YP_002017047.1 194335253 6462846 complement(75192..75782) 1 NC_011060.1 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta 75782 6462846 Ppha_0074 Pelodictyon phaeoclathratiforme BU-1 indolepyruvate oxidoreductase subunit beta YP_002017047.1 75192 R 324925 CDS YP_002017048.1 194335254 6462676 complement(75790..77400) 1 NC_011060.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cph:Cpha266_1966 indolepyruvate ferredoxin oxidoreductase; Indolepyruvate ferredoxin oxidoreductase 77400 6462676 Ppha_0075 Pelodictyon phaeoclathratiforme BU-1 Indolepyruvate ferredoxin oxidoreductase YP_002017048.1 75790 R 324925 CDS YP_002017049.1 194335255 6462841 77748..79775 1 NC_011060.1 KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 79775 6462841 Ppha_0076 Pelodictyon phaeoclathratiforme BU-1 multi-sensor signal transduction histidine kinase YP_002017049.1 77748 D 324925 CDS YP_002017050.1 194335256 6462670 complement(79809..80420) 1 NC_011060.1 KEGG: cph:Cpha266_2683 hypothetical protein; hypothetical protein 80420 6462670 Ppha_0077 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017050.1 79809 R 324925 CDS YP_002017051.1 194335257 6462832 complement(80550..81623) 1 NC_011060.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 81623 prfA 6462832 prfA Pelodictyon phaeoclathratiforme BU-1 peptide chain release factor 1 YP_002017051.1 80550 R 324925 CDS YP_002017052.1 194335258 6461121 complement(81642..83003) 1 NC_011060.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: cph:Cpha266_2681 RseP peptidase. Metallo peptidase. MEROPS family M50B; membrane-associated zinc metalloprotease 83003 6461121 Ppha_0079 Pelodictyon phaeoclathratiforme BU-1 membrane-associated zinc metalloprotease YP_002017052.1 81642 R 324925 CDS YP_002017053.1 194335259 6461601 complement(83094..84242) 1 NC_011060.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 84242 6461601 Ppha_0080 Pelodictyon phaeoclathratiforme BU-1 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002017053.1 83094 R 324925 CDS YP_002017054.1 194335260 6461471 complement(84553..86646) 1 NC_011060.1 KEGG: cph:Cpha266_2678 FtsH-2 peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 86646 6461471 Ppha_0081 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent metalloprotease FtsH YP_002017054.1 84553 R 324925 CDS YP_002017055.1 194335261 6462064 86903..87727 1 NC_011060.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cph:Cpha266_2677 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 87727 6462064 Ppha_0082 Pelodictyon phaeoclathratiforme BU-1 orotidine 5'-phosphate decarboxylase YP_002017055.1 86903 D 324925 CDS YP_002017056.1 194335262 6461295 87830..89677 1 NC_011060.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 89677 6461295 Ppha_0083 Pelodictyon phaeoclathratiforme BU-1 glucosamine--fructose-6-phosphate aminotransferase YP_002017056.1 87830 D 324925 CDS YP_002017057.1 194335263 6463152 89794..90735 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; domain of unknown function DUF1731; KEGG: cch:Cag_0004 hypothetical protein; hypothetical protein 90735 6463152 Ppha_0084 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017057.1 89794 D 324925 CDS YP_002017058.1 194335264 6462100 90771..91268 1 NC_011060.1 PFAM: Ferritin Dps family protein; KEGG: cph:Cpha266_2674 ferritin, Dps family protein; ferritin Dps family protein 91268 6462100 Ppha_0085 Pelodictyon phaeoclathratiforme BU-1 ferritin Dps family protein YP_002017058.1 90771 D 324925 CDS YP_002017059.1 194335265 6461886 91467..92801 1 NC_011060.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cph:Cpha266_2672 ammonium transporter; ammonium transporter 92801 6461886 Ppha_0086 Pelodictyon phaeoclathratiforme BU-1 ammonium transporter YP_002017059.1 91467 D 324925 CDS YP_002017060.1 194335266 6462225 92811..93152 1 NC_011060.1 PFAM: nitrogen regulatory protein P-II; KEGG: cch:Cag_1998 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 93152 6462225 Ppha_0087 Pelodictyon phaeoclathratiforme BU-1 nitrogen regulatory protein P-II YP_002017060.1 92811 D 324925 CDS YP_002017061.1 194335267 6461367 complement(93212..93769) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: plt:Plut_0092 hypothetical protein; hypothetical protein 93769 6461367 Ppha_0088 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017061.1 93212 R 324925 CDS YP_002017062.1 194335268 6462068 94003..95277 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: plt:Plut_0094 hypothetical protein; hypothetical protein 95277 6462068 Ppha_0089 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017062.1 94003 D 324925 CDS YP_002017063.1 194335269 6461871 95287..95724 1 NC_011060.1 PFAM: protein of unknown function UPF0079; KEGG: cph:Cpha266_2666 protein of unknown function UPF0079; hypothetical protein 95724 6461871 Ppha_0090 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017063.1 95287 D 324925 CDS YP_002017064.1 194335270 6462101 95724..96395 1 NC_011060.1 PFAM: peptidase M22 glycoprotease; KEGG: cch:Cag_1986 protease; peptidase M22 glycoprotease 96395 6462101 Ppha_0091 Pelodictyon phaeoclathratiforme BU-1 peptidase M22 glycoprotease YP_002017064.1 95724 D 324925 CDS YP_002017065.1 194335271 6462658 complement(96522..97412) 1 NC_011060.1 hypothetical protein 97412 6462658 Ppha_0092 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017065.1 96522 R 324925 CDS YP_002017066.1 194335272 6461063 97887..98126 1 NC_011060.1 hypothetical protein 98126 6461063 Ppha_0093 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017066.1 97887 D 324925 CDS YP_002017067.1 194335273 6460961 98123..98530 1 NC_011060.1 KEGG: syn:sll1715 hypothetical protein; hypothetical protein 98530 6460961 Ppha_0094 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017067.1 98123 D 324925 CDS YP_002017068.1 194335274 6462249 98858..99253 1 NC_011060.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: plt:Plut_0097 iojap-related protein; iojap family protein 99253 6462249 Ppha_0095 Pelodictyon phaeoclathratiforme BU-1 iojap family protein YP_002017068.1 98858 D 324925 CDS YP_002017069.1 194335275 6462121 99376..101859 1 NC_011060.1 KEGG: cph:Cpha266_2663 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 101859 6462121 Ppha_0096 Pelodictyon phaeoclathratiforme BU-1 DNA gyrase subunit A YP_002017069.1 99376 D 324925 CDS YP_002017070.1 194335276 6461502 101966..103663 1 NC_011060.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 103663 pyrG 6461502 pyrG Pelodictyon phaeoclathratiforme BU-1 CTP synthetase YP_002017070.1 101966 D 324925 CDS YP_002017071.1 194335277 6462045 109304..109570 1 NC_011060.1 hypothetical protein 109570 6462045 Ppha_0098 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017071.1 109304 D 324925 CDS YP_002017072.1 194335278 6462417 109679..110380 1 NC_011060.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0756 PHP C-terminal domain protein; PHP domain-containing protein 110380 6462417 Ppha_0099 Pelodictyon phaeoclathratiforme BU-1 PHP domain-containing protein YP_002017072.1 109679 D 324925 CDS YP_002017073.1 194335279 6462605 complement(110428..112626) 1 NC_011060.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: cph:Cpha266_0755 catalase/peroxidase HPI; catalase/peroxidase HPI 112626 6462605 Ppha_0100 Pelodictyon phaeoclathratiforme BU-1 catalase/peroxidase HPI YP_002017073.1 110428 R 324925 CDS YP_002017074.1 194335280 6461957 complement(112903..113322) 1 NC_011060.1 PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0754 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 113322 6461957 Ppha_0101 Pelodictyon phaeoclathratiforme BU-1 Fur family ferric uptake regulator YP_002017074.1 112903 R 324925 CDS YP_002017075.1 194335281 6461155 113611..114216 1 NC_011060.1 KEGG: cph:Cpha266_2695 hypothetical protein; hypothetical protein 114216 6461155 Ppha_0102 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017075.1 113611 D 324925 CDS YP_002017076.1 194335282 6461845 complement(114244..114585) 1 NC_011060.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase 114585 6461845 Ppha_0103 Pelodictyon phaeoclathratiforme BU-1 transcriptional coactivator/pterin dehydratase YP_002017076.1 114244 R 324925 CDS YP_002017077.1 194335283 6462494 120364..120792 1 NC_011060.1 PFAM: thioesterase superfamily protein; KEGG: cph:Cpha266_2516 thioesterase superfamily protein; thioesterase superfamily protein 120792 6462494 Ppha_0104 Pelodictyon phaeoclathratiforme BU-1 thioesterase superfamily protein YP_002017077.1 120364 D 324925 CDS YP_002017078.1 194335284 6462081 120823..121350 1 NC_011060.1 KEGG: cch:Cag_0092 hypothetical protein; hypothetical protein 121350 6462081 Ppha_0105 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017078.1 120823 D 324925 CDS YP_002017079.1 194335285 6462400 121356..122354 1 NC_011060.1 PFAM: glycosyl transferase family 9; KEGG: cph:Cpha266_2514 glycosyl transferase, family 9; glycosyl transferase family protein 122354 6462400 Ppha_0106 Pelodictyon phaeoclathratiforme BU-1 glycosyl transferase family protein YP_002017079.1 121356 D 324925 CDS YP_002017080.1 194335286 6462484 122545..122949 1 NC_011060.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 122949 rpsF 6462484 rpsF Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S6 YP_002017080.1 122545 D 324925 CDS YP_002017081.1 194335287 6462231 123016..123489 1 NC_011060.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cph:Cpha266_2511 single-strand binding protein; single-strand binding protein 123489 6462231 Ppha_0108 Pelodictyon phaeoclathratiforme BU-1 single-strand binding protein YP_002017081.1 123016 D 324925 CDS YP_002017082.1 194335288 6461684 123525..123803 1 NC_011060.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 123803 rpsR 6461684 rpsR Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S18 YP_002017082.1 123525 D 324925 CDS YP_002017083.1 194335289 6461123 123840..124295 1 NC_011060.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 124295 rplI 6461123 rplI Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L9 YP_002017083.1 123840 D 324925 CDS YP_002017084.1 194335290 6461111 124399..124599 1 NC_011060.1 KEGG: cph:Cpha266_1405 hypothetical protein; hypothetical protein 124599 6461111 Ppha_0111 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017084.1 124399 D 324925 CDS YP_002017085.1 194335291 6462396 complement(124621..124935) 1 NC_011060.1 KEGG: cph:Cpha266_0154 rhodanese domain protein; rhodanese domain-containing protein 124935 6462396 Ppha_0112 Pelodictyon phaeoclathratiforme BU-1 rhodanese domain-containing protein YP_002017085.1 124621 R 324925 CDS YP_002017086.1 194335292 6461630 complement(125171..125767) 1 NC_011060.1 TIGRFAM: yecA family protein; KEGG: cph:Cpha266_0914 YecA family protein; yecA family protein 125767 6461630 Ppha_0113 Pelodictyon phaeoclathratiforme BU-1 yecA family protein YP_002017086.1 125171 R 324925 CDS YP_002017087.1 194335293 6462374 complement(125891..126310) 1 NC_011060.1 PFAM: protein of unknown function UPF0047; KEGG: cph:Cpha266_0833 protein of unknown function UPF0047; hypothetical protein 126310 6462374 Ppha_0114 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017087.1 125891 R 324925 CDS YP_002017088.1 194335294 6461200 128557..128991 1 NC_011060.1 KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 128991 6461200 Ppha_0116 Pelodictyon phaeoclathratiforme BU-1 ECF subfamily RNA polymerase sigma-24 subunit YP_002017088.1 128557 D 324925 CDS YP_002017089.1 194335295 6462585 complement(129368..130834) 1 NC_011060.1 KEGG: cph:Cpha266_0162 hypothetical protein; hypothetical protein 130834 6462585 Ppha_0118 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017089.1 129368 R 324925 CDS YP_002017090.1 194335296 6462344 complement(join(131674..132684,132684..133154)) 1 NC_011060.1 hypothetical protein 133154 6462344 Ppha_0120 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017090.1 131674 R 324925 CDS YP_002017091.1 194335297 6462466 complement(134281..135690) 1 NC_011060.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0775 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein 135690 6462466 Ppha_0121 Pelodictyon phaeoclathratiforme BU-1 NodT family RND efflux system outer membrane lipoprotein YP_002017091.1 134281 R 324925 CDS YP_002017092.1 194335298 6461859 complement(135687..138848) 1 NC_011060.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0776 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 138848 6461859 Ppha_0122 Pelodictyon phaeoclathratiforme BU-1 hydrophobe/amphiphile efflux-1 (HAE1) family transporter YP_002017092.1 135687 R 324925 CDS YP_002017093.1 194335299 6462230 complement(138876..140030) 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0777 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 140030 6462230 Ppha_0123 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002017093.1 138876 R 324925 CDS YP_002017094.1 194335300 6461968 complement(140046..140942) 1 NC_011060.1 PFAM: regulatory protein TetR; KEGG: cph:Cpha266_0778 transcriptional regulator, TetR family; TetR family transcriptional regulator 140942 6461968 Ppha_0124 Pelodictyon phaeoclathratiforme BU-1 TetR family transcriptional regulator YP_002017094.1 140046 R 324925 CDS YP_002017095.1 194335301 6462200 141278..141508 1 NC_011060.1 KEGG: cph:Cpha266_1475 hypothetical protein; hypothetical protein 141508 6462200 Ppha_0125 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017095.1 141278 D 324925 CDS YP_002017096.1 194335302 6462409 complement(141808..143046) 1 NC_011060.1 KEGG: cph:Cpha266_0783 ATPase (AAA+ superfamily); ATPase 143046 6462409 Ppha_0127 Pelodictyon phaeoclathratiforme BU-1 ATPase YP_002017096.1 141808 R 324925 CDS YP_002017097.1 194335303 6462515 144289..145068 1 NC_011060.1 KEGG: cph:Cpha266_0779 ATPase (AAA+ superfamily)-like; ATPase -like protein 145068 6462515 Ppha_0133 Pelodictyon phaeoclathratiforme BU-1 ATPase -like protein YP_002017097.1 144289 D 324925 CDS YP_002017098.1 194335304 6461893 145291..145542 1 NC_011060.1 hypothetical protein 145542 6461893 Ppha_0134 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017098.1 145291 D 324925 CDS YP_002017099.1 194335305 6461252 complement(145548..146474) 1 NC_011060.1 PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 146474 6461252 Ppha_0135 Pelodictyon phaeoclathratiforme BU-1 integrase catalytic subunit YP_002017099.1 145548 R 324925 CDS YP_002017100.1 194335306 6461991 complement(146471..146764) 1 NC_011060.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 146764 6461991 Ppha_0136 Pelodictyon phaeoclathratiforme BU-1 transposase IS3/IS911 family protein YP_002017100.1 146471 R 324925 CDS YP_002017101.1 194335307 6462525 146778..147641 1 NC_011060.1 hypothetical protein 147641 6462525 Ppha_0137 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017101.1 146778 D 324925 CDS YP_002017102.1 194335308 6462278 147647..148153 1 NC_011060.1 hypothetical protein 148153 6462278 Ppha_0138 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017102.1 147647 D 324925 CDS YP_002017103.1 194335309 6461841 148150..149943 1 NC_011060.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: ilo:IL0196 anaerobic nitric oxide reductase transcription regulator; response regulator receiver protein 149943 6461841 Ppha_0139 Pelodictyon phaeoclathratiforme BU-1 response regulator receiver protein YP_002017103.1 148150 D 324925 CDS YP_002017104.1 194335310 6460964 150085..152454 1 NC_011060.1 KEGG: nmr:Nmar_1474 hypothetical protein; hypothetical protein 152454 6460964 Ppha_0140 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017104.1 150085 D 324925 CDS YP_002017105.1 194335311 6461473 complement(152799..152960) 1 NC_011060.1 KEGG: cph:Cpha266_0773 hypothetical protein; hypothetical protein 152960 6461473 Ppha_0142 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017105.1 152799 R 324925 CDS YP_002017106.1 194335312 6463798 153224..154531 1 NC_011060.1 KEGG: cph:Cpha266_0774 hypothetical protein; hypothetical protein 154531 6463798 Ppha_0143 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017106.1 153224 D 324925 CDS YP_002017107.1 194335313 6462273 complement(154542..154793) 1 NC_011060.1 PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1217 plasmid stabilization system; plasmid stabilization system 154793 6462273 Ppha_0144 Pelodictyon phaeoclathratiforme BU-1 plasmid stabilization system YP_002017107.1 154542 R 324925 CDS YP_002017108.1 194335314 6461862 complement(154820..155089) 1 NC_011060.1 KEGG: cph:Cpha266_1216 hypothetical protein; hypothetical protein 155089 6461862 Ppha_0145 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017108.1 154820 R 324925 CDS YP_002017109.1 194335315 6461350 155255..155719 1 NC_011060.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cph:Cpha266_0509 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 155719 6461350 Ppha_0146 Pelodictyon phaeoclathratiforme BU-1 BadM/Rrf2 family transcriptional regulator YP_002017109.1 155255 D 324925 CDS YP_002017110.1 194335316 6463770 155732..156625 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 156625 6463770 Ppha_0147 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002017110.1 155732 D 324925 CDS YP_002017111.1 194335317 6462401 156658..157110 1 NC_011060.1 PFAM: hypothetical protein-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_1456 hypothetical protein-containing protein; hypothetical protein 157110 6462401 Ppha_0148 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017111.1 156658 D 324925 CDS YP_002017112.1 194335318 6461638 157132..158760 1 NC_011060.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 158760 6461638 Ppha_0149 Pelodictyon phaeoclathratiforme BU-1 hydroxylamine reductase YP_002017112.1 157132 D 324925 CDS YP_002017113.1 194335319 6462526 complement(159156..159569) 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_1433 possible NtrR protein; PilT protein domain-containing protein 159569 6462526 Ppha_0151 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002017113.1 159156 R 324925 CDS YP_002017114.1 194335320 6462499 complement(159566..159826) 1 NC_011060.1 KEGG: rpd:RPD_2062 SpoVT/AbrB-like; SpoVT/AbrB-like protein 159826 6462499 Ppha_0152 Pelodictyon phaeoclathratiforme BU-1 SpoVT/AbrB-like protein YP_002017114.1 159566 R 324925 CDS YP_002017115.1 194335321 6461098 complement(160323..160454) 1 NC_011060.1 hypothetical protein 160454 6461098 Ppha_0154 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017115.1 160323 R 324925 CDS YP_002017116.1 194335322 6462375 160528..160878 1 NC_011060.1 PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0606 hypothetical protein; hypothetical protein 160878 6462375 Ppha_0155 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017116.1 160528 D 324925 CDS YP_002017117.1 194335323 6461175 160875..161159 1 NC_011060.1 KEGG: cch:Cag_1578 hypothetical protein; hypothetical protein 161159 6461175 Ppha_0156 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017117.1 160875 D 324925 CDS YP_002017118.1 194335324 6462274 161440..161769 1 NC_011060.1 PFAM: DNA polymerase beta domain protein region; KEGG: cch:Cag_0015 hypothetical protein; DNA polymerase beta domain-containing protein 161769 6462274 Ppha_0157 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase beta domain-containing protein YP_002017118.1 161440 D 324925 CDS YP_002017119.1 194335325 6462388 161762..161902 1 NC_011060.1 KEGG: cch:Cag_1579 hypothetical protein; hypothetical protein 161902 6462388 Ppha_0158 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017119.1 161762 D 324925 CDS YP_002017120.1 194335326 6462095 161971..162198 1 NC_011060.1 KEGG: gur:Gura_3207 hypothetical protein; hypothetical protein 162198 6462095 Ppha_0159 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017120.1 161971 D 324925 CDS YP_002017121.1 194335327 6462523 162641..162901 1 NC_011060.1 PFAM: protein of unknown function UPF0175; KEGG: cph:Cpha266_0647 hypothetical protein; hypothetical protein 162901 6462523 Ppha_0161 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017121.1 162641 D 324925 CDS YP_002017122.1 194335328 6462067 162885..163367 1 NC_011060.1 KEGG: cph:Cpha266_0648 hypothetical protein; hypothetical protein 163367 6462067 Ppha_0162 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017122.1 162885 D 324925 CDS YP_002017123.1 194335329 6462269 complement(164076..164399) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1818 transcriptional regulator, XRE family; XRE family transcriptional regulator 164399 6462269 Ppha_0164 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017123.1 164076 R 324925 CDS YP_002017124.1 194335330 6461598 complement(164392..164766) 1 NC_011060.1 PFAM: protein of unknown function DUF1044; KEGG: plt:Plut_1817 hypothetical protein; hypothetical protein 164766 6461598 Ppha_0165 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017124.1 164392 R 324925 CDS YP_002017125.1 194335331 6461990 165715..166158 1 NC_011060.1 KEGG: vei:Veis_3132 hypothetical protein; hypothetical protein 166158 6461990 Ppha_0167 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017125.1 165715 D 324925 CDS YP_002017126.1 194335332 6460959 166155..166922 1 NC_011060.1 PFAM: Domain of unknown function DUF1828; Domain of unknown function DUF1829; KEGG: vei:Veis_3133 Lj965 prophage protein; hypothetical protein 166922 6460959 Ppha_0168 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017126.1 166155 D 324925 CDS YP_002017127.1 194335333 6461941 complement(168193..169221) 1 NC_011060.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 169221 pheS 6461941 pheS Pelodictyon phaeoclathratiforme BU-1 phenylalanyl-tRNA synthetase subunit alpha YP_002017127.1 168193 R 324925 CDS YP_002017128.1 194335334 6461497 complement(169240..169587) 1 NC_011060.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 169587 rplT 6461497 rplT Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L20 YP_002017128.1 169240 R 324925 CDS YP_002017129.1 194335335 6462364 complement(169614..169808) 1 NC_011060.1 PFAM: ribosomal protein L35; KEGG: cch:Cag_1713 50S ribosomal protein L35; 50S ribosomal protein L35 169808 rpmI 6462364 rpmI Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L35 YP_002017129.1 169614 R 324925 CDS YP_002017130.1 194335336 6461981 complement(169858..170490) 1 NC_011060.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 170490 infC 6461981 infC Pelodictyon phaeoclathratiforme BU-1 translation initiation factor IF-3 YP_002017130.1 169858 R 324925 CDS YP_002017131.1 194335337 6461697 complement(170514..172487) 1 NC_011060.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 172487 thrS 6461697 thrS Pelodictyon phaeoclathratiforme BU-1 threonyl-tRNA synthetase YP_002017131.1 170514 R 324925 CDS YP_002017132.1 194335338 6461136 complement(172665..174071) 1 NC_011060.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: cch:Cag_1716 chlorophyllide reductase subunit Z; chlorophyllide reductase subunit Z 174071 6461136 Ppha_0177 Pelodictyon phaeoclathratiforme BU-1 chlorophyllide reductase subunit Z YP_002017132.1 172665 R 324925 CDS YP_002017133.1 194335339 6462179 complement(174094..175869) 1 NC_011060.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2499 glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 175869 6462179 Ppha_0178 Pelodictyon phaeoclathratiforme BU-1 glycoside hydrolase family 3 YP_002017133.1 174094 R 324925 CDS YP_002017134.1 194335340 6462296 complement(175893..177341) 1 NC_011060.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 177341 6462296 Ppha_0179 Pelodictyon phaeoclathratiforme BU-1 glycine dehydrogenase subunit 2 YP_002017134.1 175893 R 324925 CDS YP_002017135.1 194335341 6462199 complement(177455..177655) 1 NC_011060.1 hypothetical protein 177655 6462199 Ppha_0180 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017135.1 177455 R 324925 CDS YP_002017136.1 194335342 6462594 177788..178441 1 NC_011060.1 PFAM: protein of unknown function DUF1016; KEGG: pna:Pnap_0993 protein of unknown function DUF1016; hypothetical protein 178441 6462594 Ppha_0181 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017136.1 177788 D 324925 CDS YP_002017137.1 194335343 6461431 178529..178879 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_3866 prevent-host-death family protein; prevent-host-death family protein 178879 6461431 Ppha_0182 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002017137.1 178529 D 324925 CDS YP_002017138.1 194335344 6461028 179090..179551 1 NC_011060.1 PFAM: protein of unknown function DUF1526; KEGG: gur:Gura_4147 protein of unknown function DUF1526; hypothetical protein 179551 6461028 Ppha_0183 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017138.1 179090 D 324925 CDS YP_002017139.1 194335345 6461234 complement(179610..180536) 1 NC_011060.1 PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 180536 6461234 Ppha_0184 Pelodictyon phaeoclathratiforme BU-1 integrase catalytic subunit YP_002017139.1 179610 R 324925 CDS YP_002017140.1 194335346 6461054 complement(180533..180826) 1 NC_011060.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 180826 6461054 Ppha_0185 Pelodictyon phaeoclathratiforme BU-1 transposase IS3/IS911 family protein YP_002017140.1 180533 R 324925 CDS YP_002017141.1 194335347 6461706 181743..181970 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_3866 prevent-host-death family protein; prevent-host-death family protein 181970 6461706 Ppha_0187 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002017141.1 181743 D 324925 CDS YP_002017142.1 194335348 6460895 181976..182353 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: gur:Gura_3865 PilT protein domain protein; PilT protein domain-containing protein 182353 6460895 Ppha_0188 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002017142.1 181976 D 324925 CDS YP_002017143.1 194335349 6461975 complement(182595..184799) 1 NC_011060.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pau:PA14_28840 helicase; DEAD/DEAH box helicase 184799 6461975 Ppha_0189 Pelodictyon phaeoclathratiforme BU-1 DEAD/DEAH box helicase YP_002017143.1 182595 R 324925 CDS YP_002017144.1 194335350 6460998 complement(184780..186126) 1 NC_011060.1 KEGG: pmy:Pmen_3425 hypothetical protein; hypothetical protein 186126 6460998 Ppha_0190 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017144.1 184780 R 324925 CDS YP_002017145.1 194335351 6462574 complement(186123..190157) 1 NC_011060.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: psa:PST_3463 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 190157 6462574 Ppha_0191 Pelodictyon phaeoclathratiforme BU-1 Sel1 domain-containing protein repeat-containing protein YP_002017145.1 186123 R 324925 CDS YP_002017146.1 194335352 6462495 complement(190482..190724) 1 NC_011060.1 KEGG: gur:Gura_3956 hypothetical protein; hypothetical protein 190724 6462495 Ppha_0192 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017146.1 190482 R 324925 CDS YP_002017147.1 194335353 6461663 complement(190736..191005) 1 NC_011060.1 KEGG: gur:Gura_3957 hypothetical protein; hypothetical protein 191005 6461663 Ppha_0193 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017147.1 190736 R 324925 CDS YP_002017148.1 194335354 6461840 complement(191173..191994) 1 NC_011060.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: cph:Cpha266_2495 ribonuclease III; Ribonuclease III 191994 6461840 Ppha_0194 Pelodictyon phaeoclathratiforme BU-1 Ribonuclease III YP_002017148.1 191173 R 324925 CDS YP_002017149.1 194335355 6462178 complement(192005..193258) 1 NC_011060.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cch:Cag_1660 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 193258 6462178 Ppha_0195 Pelodictyon phaeoclathratiforme BU-1 3-oxoacyl-(acyl-carrier-protein) synthase 2 YP_002017149.1 192005 R 324925 CDS YP_002017150.1 194335356 6462358 complement(193309..193548) 1 NC_011060.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 193548 acpP 6462358 acpP Pelodictyon phaeoclathratiforme BU-1 acyl carrier protein YP_002017150.1 193309 R 324925 CDS YP_002017151.1 194335357 6461983 complement(193636..194373) 1 NC_011060.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plt:Plut_0131 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 194373 6461983 Ppha_0197 Pelodictyon phaeoclathratiforme BU-1 3-oxoacyl-(acyl-carrier-protein) reductase YP_002017151.1 193636 R 324925 CDS YP_002017152.1 194335358 6462538 complement(194402..195310) 1 NC_011060.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cph:Cpha266_2491 [acyl-carrier-protein] S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 195310 6462538 Ppha_0198 Pelodictyon phaeoclathratiforme BU-1 malonyl CoA-acyl carrier protein transacylase YP_002017152.1 194402 R 324925 CDS YP_002017153.1 194335359 6461868 complement(195348..196337) 1 NC_011060.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 196337 6461868 Ppha_0199 Pelodictyon phaeoclathratiforme BU-1 3-oxoacyl-ACP synthase YP_002017153.1 195348 R 324925 CDS YP_002017154.1 194335360 6461950 complement(196440..197465) 1 NC_011060.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 197465 6461950 Ppha_0200 Pelodictyon phaeoclathratiforme BU-1 glycerol-3-phosphate acyltransferase PlsX YP_002017154.1 196440 R 324925 CDS YP_002017155.1 194335361 6462385 complement(197494..197685) 1 NC_011060.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 197685 rpmF 6462385 rpmF Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L32 YP_002017155.1 197494 R 324925 CDS YP_002017156.1 194335362 6462419 complement(197704..198243) 1 NC_011060.1 PFAM: protein of unknown function DUF177; KEGG: cph:Cpha266_2487 protein of unknown function DUF177; hypothetical protein 198243 6462419 Ppha_0202 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017156.1 197704 R 324925 CDS YP_002017157.1 194335363 6462371 198678..198839 1 NC_011060.1 hypothetical protein 198839 6462371 Ppha_0203 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017157.1 198678 D 324925 CDS YP_002017158.1 194335364 6462588 198936..200618 1 NC_011060.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cph:Cpha266_2478 2-isopropylmalate synthase; 2-isopropylmalate synthase 200618 6462588 Ppha_0204 Pelodictyon phaeoclathratiforme BU-1 2-isopropylmalate synthase YP_002017158.1 198936 D 324925 CDS YP_002017159.1 194335365 6462437 200775..201677 1 NC_011060.1 PFAM: periplasmic solute binding protein; KEGG: cph:Cpha266_2476 periplasmic solute binding protein; periplasmic solute binding protein 201677 6462437 Ppha_0205 Pelodictyon phaeoclathratiforme BU-1 periplasmic solute binding protein YP_002017159.1 200775 D 324925 CDS YP_002017160.1 194335366 6462431 201674..202342 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_2475 ABC transporter related; ABC transporter-like protein 202342 6462431 Ppha_0206 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017160.1 201674 D 324925 CDS YP_002017161.1 194335367 6462482 202317..203138 1 NC_011060.1 PFAM: ABC-3 protein; KEGG: cch:Cag_1676 ABC 3 transport family protein; ABC-3 protein 203138 6462482 Ppha_0207 Pelodictyon phaeoclathratiforme BU-1 ABC-3 protein YP_002017161.1 202317 D 324925 CDS YP_002017162.1 194335368 6461920 complement(203280..203450) 1 NC_011060.1 KEGG: plt:Plut_0144 Ric1 protein; Ric1 protein 203450 6461920 Ppha_0208 Pelodictyon phaeoclathratiforme BU-1 Ric1 protein YP_002017162.1 203280 R 324925 CDS YP_002017163.1 194335369 6461117 203662..203970 1 NC_011060.1 KEGG: plt:Plut_0145 hypothetical protein; hypothetical protein 203970 6461117 Ppha_0209 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017163.1 203662 D 324925 CDS YP_002017164.1 194335370 6462589 204073..204903 1 NC_011060.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cph:Cpha266_2470 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 204903 6462589 Ppha_0210 Pelodictyon phaeoclathratiforme BU-1 glycerophosphoryl diester phosphodiesterase YP_002017164.1 204073 D 324925 CDS YP_002017165.1 194335371 6461960 complement(204933..206276) 1 NC_011060.1 KEGG: cph:Cpha266_2467 hypothetical protein; hypothetical protein 206276 6461960 Ppha_0211 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017165.1 204933 R 324925 CDS YP_002017166.1 194335372 6461439 complement(206282..207112) 1 NC_011060.1 KEGG: plt:Plut_0150 delta 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 207112 6461439 Ppha_0212 Pelodictyon phaeoclathratiforme BU-1 pyrroline-5-carboxylate reductase YP_002017166.1 206282 R 324925 CDS YP_002017167.1 194335373 6461735 complement(207411..207746) 1 NC_011060.1 PFAM: cytochrome c class I; KEGG: cch:Cag_0917 cytochrome c-555; cytochrome c class I 207746 6461735 Ppha_0213 Pelodictyon phaeoclathratiforme BU-1 cytochrome c class I YP_002017167.1 207411 R 324925 CDS YP_002017168.1 194335374 6461679 complement(207979..208413) 1 NC_011060.1 PFAM: cytochrome c class I; KEGG: cph:Cpha266_2463 cytochrome c, class I; cytochrome c class I 208413 6461679 Ppha_0214 Pelodictyon phaeoclathratiforme BU-1 cytochrome c class I YP_002017168.1 207979 R 324925 CDS YP_002017169.1 194335375 6461055 complement(208478..209929) 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_2462 radical SAM protein; radical SAM protein 209929 6461055 Ppha_0215 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017169.1 208478 R 324925 CDS YP_002017170.1 194335376 6462387 complement(209938..210603) 1 NC_011060.1 KEGG: cch:Cag_0105 hypothetical protein; hypothetical protein 210603 6462387 Ppha_0216 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017170.1 209938 R 324925 CDS YP_002017171.1 194335377 6461888 complement(210624..211763) 1 NC_011060.1 PFAM: aminotransferase class V; KEGG: cph:Cpha266_2460 serine--glyoxylate transaminase; serine--glyoxylate transaminase 211763 6461888 Ppha_0217 Pelodictyon phaeoclathratiforme BU-1 serine--glyoxylate transaminase YP_002017171.1 210624 R 324925 CDS YP_002017172.1 194335378 6462556 complement(211781..212884) 1 NC_011060.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 212884 6462556 Ppha_0218 Pelodictyon phaeoclathratiforme BU-1 carbamoyl phosphate synthase small subunit YP_002017172.1 211781 R 324925 CDS YP_002017173.1 194335379 6461171 complement(212893..213249) 1 NC_011060.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: plt:Plut_0157 YajC; preprotein translocase subunit YajC 213249 6461171 Ppha_0219 Pelodictyon phaeoclathratiforme BU-1 preprotein translocase subunit YajC YP_002017173.1 212893 R 324925 CDS YP_002017174.1 194335380 6462319 complement(213327..214379) 1 NC_011060.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 214379 6462319 Ppha_0220 Pelodictyon phaeoclathratiforme BU-1 DNA-binding/iron metalloprotein/AP endonuclease YP_002017174.1 213327 R 324925 CDS YP_002017175.1 194335381 6461877 214404..214631 1 NC_011060.1 KEGG: cch:Cag_0110 hypothetical protein; hypothetical protein 214631 6461877 Ppha_0221 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017175.1 214404 D 324925 CDS YP_002017176.1 194335382 6462262 214732..215730 1 NC_011060.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cph:Cpha266_2455 ATPase associated with various cellular activities, AAA_3; ATPase 215730 6462262 Ppha_0222 Pelodictyon phaeoclathratiforme BU-1 ATPase YP_002017176.1 214732 D 324925 CDS YP_002017177.1 194335383 6461790 215746..216654 1 NC_011060.1 PFAM: von Willebrand factor A; protein of unknown function DUF58; KEGG: cph:Cpha266_2454 protein of unknown function DUF58; hypothetical protein 216654 6461790 Ppha_0223 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017177.1 215746 D 324925 CDS YP_002017178.1 194335384 6462714 216713..217606 1 NC_011060.1 KEGG: cch:Cag_0113 hypothetical protein; hypothetical protein 217606 6462714 Ppha_0224 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017178.1 216713 D 324925 CDS YP_002017179.1 194335385 6461762 complement(217743..218207) 1 NC_011060.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 218207 6461762 Ppha_0225 Pelodictyon phaeoclathratiforme BU-1 peptidoglycan-associated lipoprotein YP_002017179.1 217743 R 324925 CDS YP_002017180.1 194335386 6462170 complement(218314..219063) 1 NC_011060.1 PFAM: surface antigen msp4 family protein; KEGG: cph:Cpha266_0396 hypothetical protein; surface antigen msp4 family protein 219063 6462170 Ppha_0226 Pelodictyon phaeoclathratiforme BU-1 surface antigen msp4 family protein YP_002017180.1 218314 R 324925 CDS YP_002017181.1 194335387 6461475 219500..219664 1 NC_011060.1 hypothetical protein 219664 6461475 Ppha_0227 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017181.1 219500 D 324925 CDS YP_002017182.1 194335388 6462132 219689..220045 1 NC_011060.1 PFAM: ATP-binding region ATPase domain protein; KEGG: dol:Dole_1520 PAS/PAC sensor hybrid histidine kinase; histidine kinase 220045 6462132 Ppha_0228 Pelodictyon phaeoclathratiforme BU-1 histidine kinase YP_002017182.1 219689 D 324925 CDS YP_002017183.1 194335389 6460940 220139..223555 1 NC_011060.1 KEGG: cch:Cag_0563 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; MCP methyltransferase/methylesterase 223555 6460940 Ppha_0229 Pelodictyon phaeoclathratiforme BU-1 MCP methyltransferase/methylesterase YP_002017183.1 220139 D 324925 CDS YP_002017184.1 194335390 6461863 223552..224529 1 NC_011060.1 KEGG: cch:Cag_0562 PAS/PAC sensor protein; PAS/PAC sensor protein 224529 6461863 Ppha_0230 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor protein YP_002017184.1 223552 D 324925 CDS YP_002017185.1 194335391 6461710 225264..225410 1 NC_011060.1 KEGG: cph:Cpha266_0794 hypothetical protein; hypothetical protein 225410 6461710 Ppha_0231 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017185.1 225264 D 324925 CDS YP_002017186.1 194335392 6461588 225586..226155 1 NC_011060.1 KEGG: cch:Cag_1035 hypothetical protein; hypothetical protein 226155 6461588 Ppha_0232 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017186.1 225586 D 324925 CDS YP_002017187.1 194335393 6462759 226218..226508 1 NC_011060.1 KEGG: cch:Cag_1041 hypothetical protein; hypothetical protein 226508 6462759 Ppha_0233 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017187.1 226218 D 324925 CDS YP_002017188.1 194335394 6460866 226631..227092 1 NC_011060.1 KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 227092 6460866 Ppha_0234 Pelodictyon phaeoclathratiforme BU-1 ECF subfamily RNA polymerase sigma-24 subunit YP_002017188.1 226631 D 324925 CDS YP_002017189.1 194335395 6462327 227089..228186 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1356 glycosyl transferase, group 1; group 1 glycosyl transferase 228186 6462327 Ppha_0235 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017189.1 227089 D 324925 CDS YP_002017190.1 194335396 6461577 228342..228824 1 NC_011060.1 KEGG: cph:Cpha266_1270 hypothetical protein; hypothetical protein 228824 6461577 Ppha_0236 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017190.1 228342 D 324925 CDS YP_002017191.1 194335397 6460882 229159..231522 1 NC_011060.1 PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like; hypothetical protein 231522 6460882 Ppha_0238 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017191.1 229159 D 324925 CDS YP_002017192.1 194335398 6461061 231624..231995 1 NC_011060.1 KEGG: cph:Cpha266_2281 hypothetical protein; hypothetical protein 231995 6461061 Ppha_0239 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017192.1 231624 D 324925 CDS YP_002017193.1 194335399 6462954 232008..232520 1 NC_011060.1 KEGG: cph:Cpha266_0521 hypothetical protein; hypothetical protein 232520 6462954 Ppha_0240 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017193.1 232008 D 324925 CDS YP_002017194.1 194335400 6462609 232579..233574 1 NC_011060.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: plt:Plut_1552 thiosulphate-binding protein; sulfate ABC transporter, periplasmic sulfate-binding protein 233574 6462609 Ppha_0241 Pelodictyon phaeoclathratiforme BU-1 sulfate ABC transporter, periplasmic sulfate-binding protein YP_002017194.1 232579 D 324925 CDS YP_002017195.1 194335401 6463767 233664..234674 1 NC_011060.1 PFAM: von Willebrand factor A; KEGG: cph:Cpha266_2452 von Willebrand factor, type A; von Willebrand factor A 234674 6463767 Ppha_0242 Pelodictyon phaeoclathratiforme BU-1 von Willebrand factor A YP_002017195.1 233664 D 324925 CDS YP_002017196.1 194335402 6461632 234715..235746 1 NC_011060.1 PFAM: von Willebrand factor A; KEGG: cph:Cpha266_2451 von Willebrand factor, type A; von Willebrand factor A 235746 6461632 Ppha_0243 Pelodictyon phaeoclathratiforme BU-1 von Willebrand factor A YP_002017196.1 234715 D 324925 CDS YP_002017197.1 194335403 6463467 235854..236153 1 NC_011060.1 KEGG: cch:Cag_1877 hypothetical protein; hypothetical protein 236153 6463467 Ppha_0244 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017197.1 235854 D 324925 CDS YP_002017198.1 194335404 6462596 236184..237509 1 NC_011060.1 PFAM: AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2449 AAA ATPase, central domain protein; ATPase AAA 237509 6462596 Ppha_0245 Pelodictyon phaeoclathratiforme BU-1 ATPase AAA YP_002017198.1 236184 D 324925 CDS YP_002017199.1 194335405 6462147 237621..240362 1 NC_011060.1 KEGG: cph:Cpha266_1202 hypothetical protein; hypothetical protein 240362 6462147 Ppha_0246 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017199.1 237621 D 324925 CDS YP_002017200.1 194335406 6462614 240564..241814 1 NC_011060.1 KEGG: gvi:gll1120 unknown protein; hypothetical protein 241814 6462614 Ppha_0247 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017200.1 240564 D 324925 CDS YP_002017201.1 194335407 6461996 241819..244200 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: cch:Cag_1875 hypothetical protein; hypothetical protein 244200 6461996 Ppha_0248 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017201.1 241819 D 324925 CDS YP_002017202.1 194335408 6461503 244339..244872 1 NC_011060.1 KEGG: cph:Cpha266_2448 hypothetical protein; hypothetical protein 244872 6461503 Ppha_0249 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017202.1 244339 D 324925 CDS YP_002017203.1 194335409 6462468 244949..246376 1 NC_011060.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 246376 gatB 6462468 gatB Pelodictyon phaeoclathratiforme BU-1 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_002017203.1 244949 D 324925 CDS YP_002017204.1 194335410 6462218 complement(246381..246638) 1 NC_011060.1 PFAM: Exonuclease VII small subunit; KEGG: cph:Cpha266_2446 exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit 246638 6462218 Ppha_0251 Pelodictyon phaeoclathratiforme BU-1 Exonuclease VII small subunit YP_002017204.1 246381 R 324925 CDS YP_002017205.1 194335411 6460929 246711..247724 1 NC_011060.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 247724 obgE 6460929 obgE Pelodictyon phaeoclathratiforme BU-1 GTPase ObgE YP_002017205.1 246711 D 324925 CDS YP_002017206.1 194335412 6462116 247727..248194 1 NC_011060.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 248194 6462116 Ppha_0253 Pelodictyon phaeoclathratiforme BU-1 acetyltransferase YP_002017206.1 247727 D 324925 CDS YP_002017207.1 194335413 6463530 248225..248491 1 NC_011060.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cph:Cpha266_2443 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 248491 6463530 Ppha_0254 Pelodictyon phaeoclathratiforme BU-1 phosphotransferase system, phosphocarrier protein HPr YP_002017207.1 248225 D 324925 CDS YP_002017208.1 194335414 6461030 248557..249633 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2442 glycosyl transferase, group 1; group 1 glycosyl transferase 249633 6461030 Ppha_0255 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017208.1 248557 D 324925 CDS YP_002017209.1 194335415 6462557 249633..250472 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: plt:Plut_0169 glycosyl transferase; family 2 glycosyl transferase 250472 6462557 Ppha_0256 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017209.1 249633 D 324925 CDS YP_002017210.1 194335416 6462183 250495..251061 1 NC_011060.1 KEGG: cch:Cag_1865 hypothetical protein; hypothetical protein 251061 6462183 Ppha_0257 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017210.1 250495 D 324925 CDS YP_002017211.1 194335417 6462239 251042..252208 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1863 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 252208 6462239 Ppha_0258 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017211.1 251042 D 324925 CDS YP_002017212.1 194335418 6461794 252205..253701 1 NC_011060.1 PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_1862 polysaccharide efflux transporter; polysaccharide biosynthesis protein 253701 6461794 Ppha_0259 Pelodictyon phaeoclathratiforme BU-1 polysaccharide biosynthesis protein YP_002017212.1 252205 D 324925 CDS YP_002017213.1 194335419 6461892 253706..256162 1 NC_011060.1 KEGG: cch:Cag_1857 hypothetical protein; hypothetical protein 256162 6461892 Ppha_0260 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017213.1 253706 D 324925 CDS YP_002017214.1 194335420 6462328 complement(256608..257066) 1 NC_011060.1 PFAM: HipA domain protein; KEGG: eca:ECA0127 hypothetical protein; HipA domain-containing protein 257066 6462328 Ppha_0261 Pelodictyon phaeoclathratiforme BU-1 HipA domain-containing protein YP_002017214.1 256608 R 324925 CDS YP_002017215.1 194335421 6461612 complement(257063..257392) 1 NC_011060.1 SMART: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein; XRE family transcriptional regulator 257392 6461612 Ppha_0262 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017215.1 257063 R 324925 CDS YP_002017216.1 194335422 6461500 257608..258849 1 NC_011060.1 KEGG: cch:Cag_0509 hypothetical protein; hypothetical protein 258849 6461500 Ppha_0263 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017216.1 257608 D 324925 CDS YP_002017217.1 194335423 6461855 258930..259172 1 NC_011060.1 PFAM: SpoVT/AbrB domain protein; KEGG: rrs:RoseRS_3308 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE 259172 6461855 Ppha_0264 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator/antitoxin MazE YP_002017217.1 258930 D 324925 CDS YP_002017218.1 194335424 6461227 259177..259512 1 NC_011060.1 PFAM: PemK family protein; KEGG: cch:Cag_0429 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin MazF 259512 6461227 Ppha_0265 Pelodictyon phaeoclathratiforme BU-1 transcriptional modulator of MazE/toxin MazF YP_002017218.1 259177 D 324925 CDS YP_002017219.1 194335425 6462366 complement(259628..260872) 1 NC_011060.1 PFAM: HipA domain protein; KEGG: hch:HCH_01139 uncharacterized protein related to capsule biosynthesis enzyme; HipA domain-containing protein 260872 6462366 Ppha_0266 Pelodictyon phaeoclathratiforme BU-1 HipA domain-containing protein YP_002017219.1 259628 R 324925 CDS YP_002017220.1 194335426 6461238 complement(260859..261158) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein; XRE family transcriptional regulator 261158 6461238 Ppha_0267 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017220.1 260859 R 324925 CDS YP_002017221.1 194335427 6461642 262356..262943 1 NC_011060.1 KEGG: sus:Acid_6999 hypothetical protein; hypothetical protein 262943 6461642 Ppha_0269 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017221.1 262356 D 324925 CDS YP_002017222.1 194335428 6462300 263277..266066 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tle:Tlet_1717 radical SAM protein; radical SAM protein 266066 6462300 Ppha_0270 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017222.1 263277 D 324925 CDS YP_002017223.1 194335429 6462565 266083..266625 1 NC_011060.1 PFAM: NUDIX hydrolase; KEGG: chu:CHU_2826 pyrophosphohydrolase related protein; NUDIX hydrolase 266625 6462565 Ppha_0271 Pelodictyon phaeoclathratiforme BU-1 NUDIX hydrolase YP_002017223.1 266083 D 324925 CDS YP_002017224.1 194335430 6461615 complement(266707..267414) 1 NC_011060.1 KEGG: mag:amb1154 hypothetical protein; hypothetical protein 267414 6461615 Ppha_0272 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017224.1 266707 R 324925 CDS YP_002017225.1 194335431 6461616 complement(267515..268543) 1 NC_011060.1 SMART: TIR protein; KEGG: fal:FRAAL5311 hypothetical protein; transmembrane receptor activity; TIR protein 268543 6461616 Ppha_0273 Pelodictyon phaeoclathratiforme BU-1 TIR protein YP_002017225.1 267515 R 324925 CDS YP_002017226.1 194335432 6461678 269156..272269 1 NC_011060.1 KEGG: rba:RB452 hypothetical protein; hypothetical protein 272269 6461678 Ppha_0274 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017226.1 269156 D 324925 CDS YP_002017227.1 194335433 6460978 272269..272877 1 NC_011060.1 KEGG: rba:RB453 hypothetical protein; hypothetical protein 272877 6460978 Ppha_0275 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017227.1 272269 D 324925 CDS YP_002017228.1 194335434 6461911 274166..275878 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: amt:Amet_0623 transposase, IS4; transposase IS4 family protein 275878 6461911 Ppha_0277 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002017228.1 274166 D 324925 CDS YP_002017229.1 194335435 6462456 277865..280612 1 NC_011060.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rba:RB460 probable DEAH ATP-dependent helicase; helicase domain-containing protein 280612 6462456 Ppha_0278 Pelodictyon phaeoclathratiforme BU-1 helicase domain-containing protein YP_002017229.1 277865 D 324925 CDS YP_002017230.1 194335436 6462173 complement(280736..281038) 1 NC_011060.1 PFAM: plasmid stabilization system; KEGG: cph:Cpha266_0252 hypothetical protein; plasmid stabilization system 281038 6462173 Ppha_0279 Pelodictyon phaeoclathratiforme BU-1 plasmid stabilization system YP_002017230.1 280736 R 324925 CDS YP_002017231.1 194335437 6461904 complement(281035..281265) 1 NC_011060.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: mhu:Mhun_0713 hypothetical protein; addiction module protein 281265 6461904 Ppha_0280 Pelodictyon phaeoclathratiforme BU-1 addiction module protein YP_002017231.1 281035 R 324925 CDS YP_002017232.1 194335438 6461946 complement(281508..281771) 1 NC_011060.1 KEGG: tde:TDE2749 hypothetical protein; hypothetical protein 281771 6461946 Ppha_0281 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017232.1 281508 R 324925 CDS YP_002017233.1 194335439 6461157 complement(282256..282531) 1 NC_011060.1 KEGG: gur:Gura_3064 hypothetical protein; hypothetical protein 282531 6461157 Ppha_0283 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017233.1 282256 R 324925 CDS YP_002017234.1 194335440 6461589 283065..283475 1 NC_011060.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 283475 rpsL 6461589 rpsL Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S12 YP_002017234.1 283065 D 324925 CDS YP_002017235.1 194335441 6461734 283506..283973 1 NC_011060.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 283973 6461734 Ppha_0285 Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S7 YP_002017235.1 283506 D 324925 CDS YP_002017236.1 194335442 6461900 284014..286128 1 NC_011060.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 286128 6461900 Ppha_0286 Pelodictyon phaeoclathratiforme BU-1 elongation factor G YP_002017236.1 284014 D 324925 CDS YP_002017237.1 194335443 6461535 286197..287378 1 NC_011060.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 287378 6461535 Ppha_0287 Pelodictyon phaeoclathratiforme BU-1 elongation factor Tu YP_002017237.1 286197 D 324925 CDS YP_002017238.1 194335444 6461084 287456..287767 1 NC_011060.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 287767 rpsJ 6461084 rpsJ Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S10 YP_002017238.1 287456 D 324925 CDS YP_002017239.1 194335445 6461133 287789..288418 1 NC_011060.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 288418 rplC 6461133 rplC Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L3 YP_002017239.1 287789 D 324925 CDS YP_002017240.1 194335446 6462038 288426..289064 1 NC_011060.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 289064 rplD 6462038 rplD Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L4 YP_002017240.1 288426 D 324925 CDS YP_002017241.1 194335447 6462153 289096..289407 1 NC_011060.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 289407 rplW 6462153 rplW Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L23 YP_002017241.1 289096 D 324925 CDS YP_002017242.1 194335448 6462304 289484..290278 1 NC_011060.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 290278 rplB 6462304 rplB Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L2 YP_002017242.1 289484 D 324925 CDS YP_002017243.1 194335449 6461951 290312..290611 1 NC_011060.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 290611 rpsS 6461951 rpsS Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S19 YP_002017243.1 290312 D 324925 CDS YP_002017244.1 194335450 6462261 290642..291001 1 NC_011060.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 291001 rplV 6462261 rplV Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L22 YP_002017244.1 290642 D 324925 CDS YP_002017245.1 194335451 6461882 291018..291767 1 NC_011060.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 291767 rpsC 6461882 rpsC Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S3 YP_002017245.1 291018 D 324925 CDS YP_002017246.1 194335452 6461760 291812..292231 1 NC_011060.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 292231 rplP 6461760 rplP Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L16 YP_002017246.1 291812 D 324925 CDS YP_002017247.1 194335453 6462135 292266..292472 1 NC_011060.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 292472 6462135 Ppha_0297 Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L29 YP_002017247.1 292266 D 324925 CDS YP_002017248.1 194335454 6461327 292520..292804 1 NC_011060.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 292804 rpsQ 6461327 rpsQ Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S17 YP_002017248.1 292520 D 324925 CDS YP_002017249.1 194335455 6462240 292843..293211 1 NC_011060.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 293211 rplN 6462240 rplN Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L14 YP_002017249.1 292843 D 324925 CDS YP_002017250.1 194335456 6462053 293329..293571 1 NC_011060.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 293571 rplX 6462053 rplX Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L24 YP_002017250.1 293329 D 324925 CDS YP_002017251.1 194335457 6461181 293633..294220 1 NC_011060.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 294220 rplE 6461181 rplE Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L5 YP_002017251.1 293633 D 324925 CDS YP_002017252.1 194335458 6461564 294237..294506 1 NC_011060.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 294506 rpsN 6461564 rpsN Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S14 YP_002017252.1 294237 D 324925 CDS YP_002017253.1 194335459 6461449 294571..294966 1 NC_011060.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 294966 rpsH 6461449 rpsH Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S8 YP_002017253.1 294571 D 324925 CDS YP_002017254.1 194335460 6462019 294995..295534 1 NC_011060.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 295534 rplF 6462019 rplF Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L6 YP_002017254.1 294995 D 324925 CDS YP_002017255.1 194335461 6461275 295592..295951 1 NC_011060.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 295951 rplR 6461275 rplR Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L18 YP_002017255.1 295592 D 324925 CDS YP_002017256.1 194335462 6462583 295975..296493 1 NC_011060.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 296493 rpsE 6462583 rpsE Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S5 YP_002017256.1 295975 D 324925 CDS YP_002017257.1 194335463 6462561 296496..296696 1 NC_011060.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 296696 rpmD 6462561 rpmD Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L30 YP_002017257.1 296496 D 324925 CDS YP_002017258.1 194335464 6461540 296731..297285 1 NC_011060.1 late assembly protein; 50S ribosomal protein L15 297285 rplO 6461540 rplO Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L15 YP_002017258.1 296731 D 324925 CDS YP_002017259.1 194335465 6462216 297304..298635 1 NC_011060.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 298635 secY 6462216 secY Pelodictyon phaeoclathratiforme BU-1 preprotein translocase subunit SecY YP_002017259.1 297304 D 324925 CDS YP_002017260.1 194335466 6462026 298646..299443 1 NC_011060.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pvi:Cvib_0267 methionine aminopeptidase, type I; methionine aminopeptidase 299443 6462026 Ppha_0310 Pelodictyon phaeoclathratiforme BU-1 methionine aminopeptidase YP_002017260.1 298646 D 324925 CDS YP_002017261.1 194335467 6462568 299483..299701 1 NC_011060.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 299701 infA 6462568 infA Pelodictyon phaeoclathratiforme BU-1 translation initiation factor IF-1 YP_002017261.1 299483 D 324925 CDS YP_002017262.1 194335468 6461747 299818..299934 1 NC_011060.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 299934 rpmJ 6461747 rpmJ Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L36 YP_002017262.1 299818 D 324925 CDS YP_002017263.1 194335469 6461625 299968..300345 1 NC_011060.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 300345 rpsM 6461625 rpsM Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S13 YP_002017263.1 299968 D 324925 CDS YP_002017264.1 194335470 6462260 300394..300777 1 NC_011060.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 300777 6462260 Ppha_0314 Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S11 YP_002017264.1 300394 D 324925 CDS YP_002017265.1 194335471 6462177 300815..301426 1 NC_011060.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 301426 rpsD 6462177 rpsD Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S4 YP_002017265.1 300815 D 324925 CDS YP_002017266.1 194335472 6462527 301456..302439 1 NC_011060.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 302439 6462527 Ppha_0316 Pelodictyon phaeoclathratiforme BU-1 DNA-directed RNA polymerase subunit alpha YP_002017266.1 301456 D 324925 CDS YP_002017267.1 194335473 6461193 302486..302944 1 NC_011060.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 302944 rplQ 6461193 rplQ Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L17 YP_002017267.1 302486 D 324925 CDS YP_002017268.1 194335474 6463499 complement(302986..303672) 1 NC_011060.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 303672 gidB 6463499 gidB Pelodictyon phaeoclathratiforme BU-1 16S rRNA methyltransferase GidB YP_002017268.1 302986 R 324925 CDS YP_002017269.1 194335475 6461482 303856..304977 1 NC_011060.1 PFAM: Nucleotidyl transferase; KEGG: cch:Cag_1821 mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase 304977 6461482 Ppha_0319 Pelodictyon phaeoclathratiforme BU-1 mannose-1-phosphate guanylyltransferase YP_002017269.1 303856 D 324925 CDS YP_002017270.1 194335476 6460915 complement(304974..306428) 1 NC_011060.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 306428 cysS 6460915 cysS Pelodictyon phaeoclathratiforme BU-1 cysteinyl-tRNA synthetase YP_002017270.1 304974 R 324925 CDS YP_002017271.1 194335477 6460876 306573..307154 1 NC_011060.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 307154 engB 6460876 engB Pelodictyon phaeoclathratiforme BU-1 ribosome biogenesis GTP-binding protein YsxC YP_002017271.1 306573 D 324925 CDS YP_002017272.1 194335478 6463689 307166..308470 1 NC_011060.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 308470 6463689 Ppha_0322 Pelodictyon phaeoclathratiforme BU-1 adenylosuccinate synthetase YP_002017272.1 307166 D 324925 CDS YP_002017273.1 194335479 6460907 308489..308809 1 NC_011060.1 PFAM: protein of unknown function DUF77; KEGG: plt:Plut_0214 protein of unknown function DUF77; hypothetical protein 308809 6460907 Ppha_0323 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017273.1 308489 D 324925 CDS YP_002017274.1 194335480 6462049 308907..310169 1 NC_011060.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 310169 6462049 Ppha_0324 Pelodictyon phaeoclathratiforme BU-1 light-independent protochlorophyllide reductase subunit N YP_002017274.1 308907 D 324925 CDS YP_002017275.1 194335481 6462308 310211..311818 1 NC_011060.1 light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 311818 6462308 Ppha_0325 Pelodictyon phaeoclathratiforme BU-1 light-independent protochlorophyllide reductase subunit B YP_002017275.1 310211 D 324925 CDS YP_002017276.1 194335482 6461118 311852..312679 1 NC_011060.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 312679 chlL 6461118 chlL Pelodictyon phaeoclathratiforme BU-1 protochlorophyllide reductase iron-sulfur ATP-binding protein YP_002017276.1 311852 D 324925 CDS YP_002017277.1 194335483 6462373 312709..313326 1 NC_011060.1 KEGG: sfu:Sfum_2080 hypothetical protein; hypothetical protein 313326 6462373 Ppha_0327 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017277.1 312709 D 324925 CDS YP_002017278.1 194335484 6461150 complement(313416..313988) 1 NC_011060.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase; bacteriochlorophyll 4-vinyl reductase 313988 6461150 Ppha_0328 Pelodictyon phaeoclathratiforme BU-1 bacteriochlorophyll 4-vinyl reductase YP_002017278.1 313416 R 324925 CDS YP_002017279.1 194335485 6460854 complement(314012..315130) 1 NC_011060.1 KEGG: cch:Cag_1809 hypothetical protein; hypothetical protein 315130 6460854 Ppha_0329 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017279.1 314012 R 324925 CDS YP_002017280.1 194335486 6460881 315267..316736 1 NC_011060.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 316736 6460881 Ppha_0330 Pelodictyon phaeoclathratiforme BU-1 glycogen synthase YP_002017280.1 315267 D 324925 CDS YP_002017281.1 194335487 6463807 316745..317335 1 NC_011060.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: plt:Plut_0221 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase family protein 317335 6463807 Ppha_0331 Pelodictyon phaeoclathratiforme BU-1 histidinol-phosphate phosphatase family protein YP_002017281.1 316745 D 324925 CDS YP_002017282.1 194335488 6460938 317372..318496 1 NC_011060.1 KEGG: plt:Plut_0222 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 318496 6460938 Ppha_0332 Pelodictyon phaeoclathratiforme BU-1 oxygen-independent coproporphyrinogen III oxidase YP_002017282.1 317372 D 324925 CDS YP_002017283.1 194335489 6462612 318524..321166 1 NC_011060.1 KEGG: cch:Cag_0197 hypothetical protein; hypothetical protein 321166 6462612 Ppha_0333 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017283.1 318524 D 324925 CDS YP_002017284.1 194335490 6463032 321175..321972 1 NC_011060.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 321972 6463032 Ppha_0334 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylglucosamine acyltransferase YP_002017284.1 321175 D 324925 CDS YP_002017285.1 194335491 6460883 321992..322975 1 NC_011060.1 PFAM: ROK family protein; KEGG: pvi:Cvib_0291 ROK family protein; ROK family protein 322975 6460883 Ppha_0335 Pelodictyon phaeoclathratiforme BU-1 ROK family protein YP_002017285.1 321992 D 324925 CDS YP_002017286.1 194335492 6462297 322994..323686 1 NC_011060.1 PFAM: phosphoribosyltransferase; KEGG: plt:Plut_0226 competence protein; phosphoribosyltransferase 323686 6462297 Ppha_0336 Pelodictyon phaeoclathratiforme BU-1 phosphoribosyltransferase YP_002017286.1 322994 D 324925 CDS YP_002017287.1 194335493 6460886 323694..324437 1 NC_011060.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 324437 6460886 Ppha_0337 Pelodictyon phaeoclathratiforme BU-1 16S ribosomal RNA methyltransferase RsmE YP_002017287.1 323694 D 324925 CDS YP_002017288.1 194335494 6460988 324468..325559 1 NC_011060.1 PFAM: protein of unknown function UPF0118; KEGG: cch:Cag_0203 hypothetical protein; hypothetical protein 325559 6460988 Ppha_0338 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017288.1 324468 D 324925 CDS YP_002017289.1 194335495 6463271 complement(325641..326063) 1 NC_011060.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 326063 6463271 Ppha_0339 Pelodictyon phaeoclathratiforme BU-1 nucleoside diphosphate kinase YP_002017289.1 325641 R 324925 CDS YP_002017290.1 194335496 6462148 complement(326459..327826) 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein 327826 6462148 Ppha_0340 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002017290.1 326459 R 324925 CDS YP_002017291.1 194335497 6461876 328641..330440 1 NC_011060.1 KEGG: sph:MGAS10270_Spy0033 hypothetical protein; hypothetical protein 330440 6461876 Ppha_0341 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017291.1 328641 D 324925 CDS YP_002017292.1 194335498 6460937 330437..332182 1 NC_011060.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpe:RPE_0561 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 332182 6460937 Ppha_0342 Pelodictyon phaeoclathratiforme BU-1 DNA methylase N-4/N-6 domain-containing protein YP_002017292.1 330437 D 324925 CDS YP_002017293.1 194335499 6462331 332186..332689 1 NC_011060.1 hypothetical protein 332689 6462331 Ppha_0343 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017293.1 332186 D 324925 CDS YP_002017294.1 194335500 6462248 332693..335374 1 NC_011060.1 PFAM: type III restriction protein res subunit; KEGG: neu:NE2306 hypothetical protein; type III restriction protein res subunit 335374 6462248 Ppha_0344 Pelodictyon phaeoclathratiforme BU-1 type III restriction protein res subunit YP_002017294.1 332693 D 324925 CDS YP_002017295.1 194335501 6461557 335952..336332 1 NC_011060.1 KEGG: rba:RB11248 similar to protein-S-isoprenylcysteine O-methyltransferase; protein-S-isoprenylcysteine O-methyltransferase-like protein 336332 6461557 Ppha_0345 Pelodictyon phaeoclathratiforme BU-1 protein-S-isoprenylcysteine O-methyltransferase-like protein YP_002017295.1 335952 D 324925 CDS YP_002017296.1 194335502 6462384 337395..337616 1 NC_011060.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cch:Cag_0032 hypothetical protein; addiction module protein 337616 6462384 Ppha_0348 Pelodictyon phaeoclathratiforme BU-1 addiction module protein YP_002017296.1 337395 D 324925 CDS YP_002017297.1 194335503 6462517 337613..337849 1 NC_011060.1 KEGG: gsu:GSU0055 hypothetical protein; hypothetical protein 337849 6462517 Ppha_0349 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017297.1 337613 D 324925 CDS YP_002017298.1 194335504 6462514 complement(337865..339013) 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2339 transposase, IS4 family protein; transposase IS4 family protein 339013 6462514 Ppha_0350 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002017298.1 337865 R 324925 CDS YP_002017299.1 194335505 6462443 339338..339601 1 NC_011060.1 KEGG: tcx:Tcr_1422 hypothetical protein; hypothetical protein 339601 6462443 Ppha_0351 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017299.1 339338 D 324925 CDS YP_002017300.1 194335506 6461174 339588..340382 1 NC_011060.1 KEGG: tcx:Tcr_1422 hypothetical protein; hypothetical protein 340382 6461174 Ppha_0352 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017300.1 339588 D 324925 CDS YP_002017301.1 194335507 6461506 340485..341726 1 NC_011060.1 hypothetical protein 341726 6461506 Ppha_0353 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017301.1 340485 D 324925 CDS YP_002017302.1 194335508 6461574 342033..343055 1 NC_011060.1 SMART: HNH nuclease; KEGG: dra:DR_1533 hypothetical protein; HNH nuclease 343055 6461574 Ppha_0354 Pelodictyon phaeoclathratiforme BU-1 HNH nuclease YP_002017302.1 342033 D 324925 CDS YP_002017303.1 194335509 6460946 343198..343593 1 NC_011060.1 hypothetical protein 343593 6460946 Ppha_0355 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017303.1 343198 D 324925 CDS YP_002017304.1 194335510 6462463 343736..344158 1 NC_011060.1 PFAM: PspC domain protein; KEGG: aby:ABAYE0373 hypothetical protein; phage shock protein C, PspC 344158 6462463 Ppha_0356 Pelodictyon phaeoclathratiforme BU-1 phage shock protein C, PspC YP_002017304.1 343736 D 324925 CDS YP_002017305.1 194335511 6462245 344352..344528 1 NC_011060.1 KEGG: mar:MAE_48580 hypothetical protein; hypothetical protein 344528 6462245 Ppha_0358 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017305.1 344352 D 324925 CDS YP_002017306.1 194335512 6462569 345090..346454 1 NC_011060.1 KEGG: swo:Swol_0601 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 346454 6462569 Ppha_0360 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor protein YP_002017306.1 345090 D 324925 CDS YP_002017307.1 194335513 6462403 346641..346943 1 NC_011060.1 KEGG: cph:Cpha266_0282 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 346943 6462403 Ppha_0361 Pelodictyon phaeoclathratiforme BU-1 ferredoxin, 2Fe-2S YP_002017307.1 346641 D 324925 CDS YP_002017308.1 194335514 6462299 347175..347642 1 NC_011060.1 PFAM: protein of unknown function UPF0066; KEGG: ppd:Ppro_1968 protein of unknown function UPF0066; hypothetical protein 347642 6462299 Ppha_0362 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017308.1 347175 D 324925 CDS YP_002017309.1 194335515 6461633 347675..347962 1 NC_011060.1 KEGG: mbu:Mbur_0507 divergent AAA ATPase; ATPase AAA 347962 6461633 Ppha_0363 Pelodictyon phaeoclathratiforme BU-1 ATPase AAA YP_002017309.1 347675 D 324925 CDS YP_002017310.1 194335516 6461065 complement(348052..348498) 1 NC_011060.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_0205 bacterioferritin comigratory protein, thiol peroxidase; alkyl hydroperoxide reductase 348498 6461065 Ppha_0364 Pelodictyon phaeoclathratiforme BU-1 alkyl hydroperoxide reductase YP_002017310.1 348052 R 324925 CDS YP_002017311.1 194335517 6461209 348949..350154 1 NC_011060.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pvi:Cvib_0301 aminotransferase, class V; class V aminotransferase 350154 6461209 Ppha_0365 Pelodictyon phaeoclathratiforme BU-1 class V aminotransferase YP_002017311.1 348949 D 324925 CDS YP_002017312.1 194335518 6462241 350138..350749 1 NC_011060.1 PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cph:Cpha266_2362 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein 350749 6462241 Ppha_0366 Pelodictyon phaeoclathratiforme BU-1 nitrogen-fixing NifU domain-containing protein YP_002017312.1 350138 D 324925 CDS YP_002017313.1 194335519 6460871 350790..352112 1 NC_011060.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 352112 6460871 Ppha_0367 Pelodictyon phaeoclathratiforme BU-1 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002017313.1 350790 D 324925 CDS YP_002017314.1 194335520 6462418 352233..353240 1 NC_011060.1 catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria; bacteriochlorophyll c synthase 353240 6462418 Ppha_0368 Pelodictyon phaeoclathratiforme BU-1 bacteriochlorophyll c synthase YP_002017314.1 352233 D 324925 CDS YP_002017315.1 194335521 6462416 353285..353998 1 NC_011060.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_2359 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 353998 6462416 Ppha_0369 Pelodictyon phaeoclathratiforme BU-1 phosphatidate cytidylyltransferase YP_002017315.1 353285 D 324925 CDS YP_002017316.1 194335522 6462414 354008..354754 1 NC_011060.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2358 metallophosphoesterase; metallophosphoesterase 354754 6462414 Ppha_0370 Pelodictyon phaeoclathratiforme BU-1 metallophosphoesterase YP_002017316.1 354008 D 324925 CDS YP_002017317.1 194335523 6462412 354782..355666 1 NC_011060.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 355666 hisG 6462412 hisG Pelodictyon phaeoclathratiforme BU-1 ATP phosphoribosyltransferase YP_002017317.1 354782 D 324925 CDS YP_002017318.1 194335524 6462410 355721..356866 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2356 glycosyl transferase, family 2; family 2 glycosyl transferase 356866 6462410 Ppha_0372 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017318.1 355721 D 324925 CDS YP_002017319.1 194335525 6462407 356988..357938 1 NC_011060.1 PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat; WD-40 repeat-containing protein 357938 6462407 Ppha_0373 Pelodictyon phaeoclathratiforme BU-1 WD-40 repeat-containing protein YP_002017319.1 356988 D 324925 CDS YP_002017320.1 194335526 6462406 358167..358376 1 NC_011060.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cph:Cpha266_2354 cold-shock DNA-binding protein family; cold-shock DNA-binding domain-containing protein 358376 6462406 Ppha_0374 Pelodictyon phaeoclathratiforme BU-1 cold-shock DNA-binding domain-containing protein YP_002017320.1 358167 D 324925 CDS YP_002017321.1 194335527 6462398 358552..359286 1 NC_011060.1 KEGG: plt:Plut_0248 hypothetical protein; hypothetical protein 359286 6462398 Ppha_0375 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017321.1 358552 D 324925 CDS YP_002017322.1 194335528 6462397 359279..360226 1 NC_011060.1 KEGG: pvi:Cvib_0314 hypothetical protein; hypothetical protein 360226 6462397 Ppha_0376 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017322.1 359279 D 324925 CDS YP_002017323.1 194335529 6462386 360756..360968 1 NC_011060.1 KEGG: sit:TM1040_3853 hypothetical protein; hypothetical protein 360968 6462386 Ppha_0377 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017323.1 360756 D 324925 CDS YP_002017324.1 194335530 6462383 361120..362841 1 NC_011060.1 KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 362841 6462383 Ppha_0378 Pelodictyon phaeoclathratiforme BU-1 type I secretion system ATPase YP_002017324.1 361120 D 324925 CDS YP_002017325.1 194335531 6462382 362866..364578 1 NC_011060.1 KEGG: cph:Cpha266_1748 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 364578 6462382 Ppha_0379 Pelodictyon phaeoclathratiforme BU-1 type I secretion system ATPase YP_002017325.1 362866 D 324925 CDS YP_002017326.1 194335532 6462381 364612..365793 1 NC_011060.1 PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1747 secretion protein HlyD family protein; secretion protein HlyD family protein 365793 6462381 Ppha_0380 Pelodictyon phaeoclathratiforme BU-1 secretion protein HlyD family protein YP_002017326.1 364612 D 324925 CDS YP_002017327.1 194335533 6462380 365832..367169 1 NC_011060.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1746 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 367169 6462380 Ppha_0381 Pelodictyon phaeoclathratiforme BU-1 TolC family type I secretion outer membrane protein YP_002017327.1 365832 D 324925 CDS YP_002017328.1 194335534 6462379 367353..369278 1 NC_011060.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1482 ATPase; ABC transporter-like protein 369278 6462379 Ppha_0382 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017328.1 367353 D 324925 CDS YP_002017329.1 194335535 6462377 369281..370270 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0216 glycosyl transferase; family 2 glycosyl transferase 370270 6462377 Ppha_0383 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017329.1 369281 D 324925 CDS YP_002017330.1 194335536 6462372 370487..371641 1 NC_011060.1 KEGG: cte:CT0219 glycosyl transferase; glycosyl transferase family protein 371641 6462372 Ppha_0384 Pelodictyon phaeoclathratiforme BU-1 glycosyl transferase family protein YP_002017330.1 370487 D 324925 CDS YP_002017331.1 194335537 6462369 complement(371651..371980) 1 NC_011060.1 KEGG: pvi:Cvib_0686 hypothetical protein; hypothetical protein 371980 6462369 Ppha_0385 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017331.1 371651 R 324925 CDS YP_002017332.1 194335538 6462365 complement(372120..373172) 1 NC_011060.1 PFAM: glycosyl transferase family 9; KEGG: cte:CT0221 heptosyltransferase; glycosyl transferase family protein 373172 6462365 Ppha_0386 Pelodictyon phaeoclathratiforme BU-1 glycosyl transferase family protein YP_002017332.1 372120 R 324925 CDS YP_002017333.1 194335539 6462362 complement(373169..374263) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0359 glycosyl transferase, group 1; group 1 glycosyl transferase 374263 6462362 Ppha_0387 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017333.1 373169 R 324925 CDS YP_002017334.1 194335540 6462361 complement(374332..375384) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1472 glycosyl transferase; group 1 glycosyl transferase 375384 6462361 Ppha_0388 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017334.1 374332 R 324925 CDS YP_002017335.1 194335541 6462360 complement(375554..376633) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0692 glycosyl transferase, group 1; group 1 glycosyl transferase 376633 6462360 Ppha_0389 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017335.1 375554 R 324925 CDS YP_002017336.1 194335542 6462359 376815..377780 1 NC_011060.1 PFAM: Abortive infection protein; KEGG: plt:Plut_1789 hypothetical protein; abortive infection protein 377780 6462359 Ppha_0390 Pelodictyon phaeoclathratiforme BU-1 abortive infection protein YP_002017336.1 376815 D 324925 CDS YP_002017337.1 194335543 6462357 377808..378629 1 NC_011060.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cch:Cag_1470 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 378629 6462357 Ppha_0391 Pelodictyon phaeoclathratiforme BU-1 phosphatidate cytidylyltransferase YP_002017337.1 377808 D 324925 CDS YP_002017338.1 194335544 6462355 378756..379226 1 NC_011060.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: plt:Plut_1787 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 379226 6462355 Ppha_0392 Pelodictyon phaeoclathratiforme BU-1 PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_002017338.1 378756 D 324925 CDS YP_002017339.1 194335545 6462354 379258..380547 1 NC_011060.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 380547 hisS 6462354 hisS Pelodictyon phaeoclathratiforme BU-1 histidyl-tRNA synthetase YP_002017339.1 379258 D 324925 CDS YP_002017340.1 194335546 6462353 380547..380798 1 NC_011060.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: cte:CT0237 hypothetical protein; glutaredoxin 380798 6462353 Ppha_0394 Pelodictyon phaeoclathratiforme BU-1 glutaredoxin YP_002017340.1 380547 D 324925 CDS YP_002017341.1 194335547 6462351 380927..381130 1 NC_011060.1 KEGG: cch:Cag_1465 hypothetical protein; hypothetical protein 381130 6462351 Ppha_0395 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017341.1 380927 D 324925 CDS YP_002017342.1 194335548 6462349 381260..381781 1 NC_011060.1 KEGG: pvi:Cvib_1563 protein of unknown function DUF150; hypothetical protein 381781 6462349 Ppha_0396 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017342.1 381260 D 324925 CDS YP_002017343.1 194335549 6462347 381840..383384 1 NC_011060.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 383384 nusA 6462347 nusA Pelodictyon phaeoclathratiforme BU-1 transcription elongation factor NusA YP_002017343.1 381840 D 324925 CDS YP_002017344.1 194335550 6462346 383447..386407 1 NC_011060.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 386407 infB 6462346 infB Pelodictyon phaeoclathratiforme BU-1 translation initiation factor IF-2 YP_002017344.1 383447 D 324925 CDS YP_002017345.1 194335551 6462337 386426..386785 1 NC_011060.1 PFAM: ribosome-binding factor A; KEGG: pvi:Cvib_1560 ribosome-binding factor A; ribosome-binding factor A 386785 6462337 Ppha_0399 Pelodictyon phaeoclathratiforme BU-1 ribosome-binding factor A YP_002017345.1 386426 D 324925 CDS YP_002017346.1 194335552 6462335 386812..387537 1 NC_011060.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cch:Cag_1460 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 387537 6462335 Ppha_0400 Pelodictyon phaeoclathratiforme BU-1 tRNA pseudouridine synthase B YP_002017346.1 386812 D 324925 CDS YP_002017347.1 194335553 6462325 388566..388835 1 NC_011060.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 388835 rpsO 6462325 rpsO Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S15 YP_002017347.1 388566 D 324925 CDS YP_002017348.1 194335554 6462324 388926..389813 1 NC_011060.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cch:Cag_1457 hypothetical protein; hypothetical protein 389813 6462324 Ppha_0403 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017348.1 388926 D 324925 CDS YP_002017349.1 194335555 6462322 389818..390402 1 NC_011060.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 390402 gmk 6462322 gmk Pelodictyon phaeoclathratiforme BU-1 guanylate kinase YP_002017349.1 389818 D 324925 CDS YP_002017350.1 194335556 6462316 390414..390767 1 NC_011060.1 KEGG: plt:Plut_1772 hypothetical protein; hypothetical protein 390767 6462316 Ppha_0405 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017350.1 390414 D 324925 CDS YP_002017351.1 194335557 6462315 390745..391245 1 NC_011060.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_0377 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 391245 6462315 Ppha_0406 Pelodictyon phaeoclathratiforme BU-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002017351.1 390745 D 324925 CDS YP_002017352.1 194335558 6462311 complement(391290..392048) 1 NC_011060.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Nucleotidyl transferase; KEGG: pvi:Cvib_1552 UDP-N-acetylglucosamine pyrophosphorylase; nucleotidyl transferase 392048 6462311 Ppha_0407 Pelodictyon phaeoclathratiforme BU-1 nucleotidyl transferase YP_002017352.1 391290 R 324925 CDS YP_002017353.1 194335559 6462306 complement(392084..392470) 1 NC_011060.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 392470 6462306 Ppha_0408 Pelodictyon phaeoclathratiforme BU-1 aspartate alpha-decarboxylase YP_002017353.1 392084 R 324925 CDS YP_002017354.1 194335560 6462302 complement(392487..392993) 1 NC_011060.1 PFAM: protein of unknown function DUF1239; KEGG: cph:Cpha266_0380 hypothetical protein; hypothetical protein 392993 6462302 Ppha_0409 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017354.1 392487 R 324925 CDS YP_002017355.1 194335561 6462298 complement(393048..393596) 1 NC_011060.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH; outer membrane chaperone Skp 393596 6462298 Ppha_0410 Pelodictyon phaeoclathratiforme BU-1 outer membrane chaperone Skp YP_002017355.1 393048 R 324925 CDS YP_002017356.1 194335562 6462293 393950..394669 1 NC_011060.1 TIGRFAM: methyltransferase FkbM family; KEGG: cph:Cpha266_0382 methyltransferase FkbM family; FkbM family methyltransferase 394669 6462293 Ppha_0411 Pelodictyon phaeoclathratiforme BU-1 FkbM family methyltransferase YP_002017356.1 393950 D 324925 CDS YP_002017357.1 194335563 6462292 complement(394687..395838) 1 NC_011060.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cph:Cpha266_0383 DNA protecting protein DprA; DNA protecting protein DprA 395838 6462292 Ppha_0412 Pelodictyon phaeoclathratiforme BU-1 DNA protecting protein DprA YP_002017357.1 394687 R 324925 CDS YP_002017358.1 194335564 6462290 complement(395853..396866) 1 NC_011060.1 PFAM: Polyprenyl synthetase; KEGG: cph:Cpha266_0384 polyprenyl synthetase; polyprenyl synthetase 396866 6462290 Ppha_0413 Pelodictyon phaeoclathratiforme BU-1 polyprenyl synthetase YP_002017358.1 395853 R 324925 CDS YP_002017359.1 194335565 6462289 complement(396863..397936) 1 NC_011060.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 397936 6462289 Ppha_0414 Pelodictyon phaeoclathratiforme BU-1 isopentenyl pyrophosphate isomerase YP_002017359.1 396863 R 324925 CDS YP_002017360.1 194335566 6462286 complement(398658..399899) 1 NC_011060.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 399899 6462286 Ppha_0416 Pelodictyon phaeoclathratiforme BU-1 RNA-directed DNA polymerase YP_002017360.1 398658 R 324925 CDS YP_002017361.1 194335567 6462284 complement(399896..400279) 1 NC_011060.1 KEGG: eba:ebA7204 predicted transposase; hypothetical protein 400279 6462284 Ppha_0417 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017361.1 399896 R 324925 CDS YP_002017362.1 194335568 6462280 402467..402703 1 NC_011060.1 hypothetical protein 402703 6462280 Ppha_0419 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017362.1 402467 D 324925 CDS YP_002017363.1 194335569 6462270 402696..403109 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: mar:MAE_40120 PilT-like protein; PilT protein domain-containing protein 403109 6462270 Ppha_0420 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002017363.1 402696 D 324925 CDS YP_002017364.1 194335570 6462267 403124..404392 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214; hypothetical protein 404392 6462267 Ppha_0421 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017364.1 403124 D 324925 CDS YP_002017365.1 194335571 6462266 complement(404407..406248) 1 NC_011060.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0453 ATPase; ABC transporter-like protein 406248 6462266 Ppha_0422 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017365.1 404407 R 324925 CDS YP_002017366.1 194335572 6462265 complement(406241..407677) 1 NC_011060.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cch:Cag_0454 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 407677 6462265 Ppha_0423 Pelodictyon phaeoclathratiforme BU-1 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_002017366.1 406241 R 324925 CDS YP_002017367.1 194335573 6462264 407969..408244 1 NC_011060.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 408244 rpsT 6462264 rpsT Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S20 YP_002017367.1 407969 D 324925 CDS YP_002017368.1 194335574 6462256 408365..408967 1 NC_011060.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 408967 ruvA 6462256 ruvA Pelodictyon phaeoclathratiforme BU-1 Holliday junction DNA helicase RuvA YP_002017368.1 408365 D 324925 CDS YP_002017369.1 194335575 6462253 408977..410245 1 NC_011060.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_0391 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 410245 6462253 Ppha_0426 Pelodictyon phaeoclathratiforme BU-1 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_002017369.1 408977 D 324925 CDS YP_002017370.1 194335576 6462252 410565..411854 1 NC_011060.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 411854 rho 6462252 rho Pelodictyon phaeoclathratiforme BU-1 transcription termination factor Rho YP_002017370.1 410565 D 324925 CDS YP_002017371.1 194335577 6462246 complement(411835..412212) 1 NC_011060.1 hypothetical protein 412212 6462246 Ppha_0428 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017371.1 411835 R 324925 CDS YP_002017372.1 194335578 6462232 412511..413260 1 NC_011060.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: plt:Plut_1755 electron transfer flavoprotein beta subunit; electron transfer flavoprotein subunit alpha/beta 413260 6462232 Ppha_0429 Pelodictyon phaeoclathratiforme BU-1 electron transfer flavoprotein subunit alpha/beta YP_002017372.1 412511 D 324925 CDS YP_002017373.1 194335579 6462224 413292..414275 1 NC_011060.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cch:Cag_0461 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 414275 6462224 Ppha_0430 Pelodictyon phaeoclathratiforme BU-1 electron transfer flavoprotein subunit alpha YP_002017373.1 413292 D 324925 CDS YP_002017374.1 194335580 6462221 414350..414943 1 NC_011060.1 PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cph:Cpha266_0395 protein of unknown function DUF151; hypothetical protein 414943 6462221 Ppha_0431 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017374.1 414350 D 324925 CDS YP_002017375.1 194335581 6462217 complement(415053..417557) 1 NC_011060.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15); outer membrane protein assembly complex, YaeT protein 417557 6462217 Ppha_0432 Pelodictyon phaeoclathratiforme BU-1 outer membrane protein assembly complex, YaeT protein YP_002017375.1 415053 R 324925 CDS YP_002017376.1 194335582 6462215 complement(417580..418428) 1 NC_011060.1 KEGG: plt:Plut_1750 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 418428 6462215 Ppha_0433 Pelodictyon phaeoclathratiforme BU-1 undecaprenyl diphosphate synthase YP_002017376.1 417580 R 324925 CDS YP_002017377.1 194335583 6462214 418650..420077 1 NC_011060.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 420077 gatA 6462214 gatA Pelodictyon phaeoclathratiforme BU-1 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_002017377.1 418650 D 324925 CDS YP_002017378.1 194335584 6462212 420124..421023 1 NC_011060.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: plt:Plut_1748 succinyl-CoA ligase, alpha subunit; succinyl-CoA synthetase subunit alpha 421023 6462212 Ppha_0435 Pelodictyon phaeoclathratiforme BU-1 succinyl-CoA synthetase subunit alpha YP_002017378.1 420124 D 324925 CDS YP_002017379.1 194335585 6462211 complement(421183..422163) 1 NC_011060.1 KEGG: cch:Cag_0467 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 422163 6462211 Ppha_0436 Pelodictyon phaeoclathratiforme BU-1 KpsF/GutQ family protein YP_002017379.1 421183 R 324925 CDS YP_002017380.1 194335586 6462210 422289..422636 1 NC_011060.1 KEGG: cph:Cpha266_0402 hypothetical protein; hypothetical protein 422636 6462210 Ppha_0437 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017380.1 422289 D 324925 CDS YP_002017381.1 194335587 6462208 422660..424174 1 NC_011060.1 PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_0469 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 424174 6462208 Ppha_0438 Pelodictyon phaeoclathratiforme BU-1 polysaccharide biosynthesis protein YP_002017381.1 422660 D 324925 CDS YP_002017382.1 194335588 6462206 complement(424187..424696) 1 NC_011060.1 KEGG: pvi:Cvib_1524 hypothetical protein; hypothetical protein 424696 6462206 Ppha_0439 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017382.1 424187 R 324925 CDS YP_002017383.1 194335589 6462205 complement(424781..425164) 1 NC_011060.1 KEGG: pvi:Cvib_1523 hypothetical protein; hypothetical protein 425164 6462205 Ppha_0440 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017383.1 424781 R 324925 CDS YP_002017384.1 194335590 6462204 complement(425231..425773) 1 NC_011060.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cph:Cpha266_0408 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 425773 6462204 Ppha_0441 Pelodictyon phaeoclathratiforme BU-1 ECF subfamily RNA polymerase sigma-24 subunit YP_002017384.1 425231 R 324925 CDS YP_002017385.1 194335591 6462203 complement(425791..427173) 1 NC_011060.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: plt:Plut_1740 phosphoglucomutase; Phosphoglucomutase 427173 6462203 Ppha_0442 Pelodictyon phaeoclathratiforme BU-1 Phosphoglucomutase YP_002017385.1 425791 R 324925 CDS YP_002017386.1 194335592 6462202 427262..428404 1 NC_011060.1 TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; KEGG: cph:Cpha266_0411 lipid-A-disaccharide synthase; lipid-A-disaccharide synthase 428404 6462202 Ppha_0443 Pelodictyon phaeoclathratiforme BU-1 lipid-A-disaccharide synthase YP_002017386.1 427262 D 324925 CDS YP_002017387.1 194335593 6462201 428511..428798 1 NC_011060.1 KEGG: cch:Cag_0476 hypothetical protein; hypothetical protein 428798 6462201 Ppha_0444 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017387.1 428511 D 324925 CDS YP_002017388.1 194335594 6462195 complement(428802..429140) 1 NC_011060.1 KEGG: cph:Cpha266_2281 hypothetical protein; hypothetical protein 429140 6462195 Ppha_0445 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017388.1 428802 R 324925 CDS YP_002017389.1 194335595 6462193 complement(429219..431876) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like; hypothetical protein 431876 6462193 Ppha_0446 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017389.1 429219 R 324925 CDS YP_002017390.1 194335596 6462192 complement(432043..434013) 1 NC_011060.1 these proteins belong to a family of oxidoreductases related to the NADPH-dependent glutamate synthase; NADPH-dependent glutamate synthase small subunit 434013 6462192 Ppha_0447 Pelodictyon phaeoclathratiforme BU-1 NADPH-dependent glutamate synthase small subunit YP_002017390.1 432043 R 324925 CDS YP_002017391.1 194335597 6462190 complement(434059..435024) 1 NC_011060.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 435024 ispH 6462190 ispH Pelodictyon phaeoclathratiforme BU-1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002017391.1 434059 R 324925 CDS YP_002017392.1 194335598 6462188 complement(435101..435922) 1 NC_011060.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 435922 6462188 Ppha_0449 Pelodictyon phaeoclathratiforme BU-1 glutamate racemase YP_002017392.1 435101 R 324925 CDS YP_002017393.1 194335599 6462187 complement(436042..437133) 1 NC_011060.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 437133 6462187 Ppha_0450 Pelodictyon phaeoclathratiforme BU-1 GTP-dependent nucleic acid-binding protein EngD YP_002017393.1 436042 R 324925 CDS YP_002017394.1 194335600 6462184 437251..437946 1 NC_011060.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 437946 cmk 6462184 cmk Pelodictyon phaeoclathratiforme BU-1 cytidylate kinase YP_002017394.1 437251 D 324925 CDS YP_002017395.1 194335601 6462182 438070..439848 1 NC_011060.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 439848 rpsA 6462182 rpsA Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S1 YP_002017395.1 438070 D 324925 CDS YP_002017396.1 194335602 6462174 complement(440029..441846) 1 NC_011060.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pmo:Pmob_0755 peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 441846 6462174 Ppha_0453 Pelodictyon phaeoclathratiforme BU-1 peptidase S8/S53 subtilisin kexin sedolisin YP_002017396.1 440029 R 324925 CDS YP_002017397.1 194335603 6462172 442003..442476 1 NC_011060.1 KEGG: bxe:Bxe_A1213 hypothetical protein; hypothetical protein 442476 6462172 Ppha_0454 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017397.1 442003 D 324925 CDS YP_002017398.1 194335604 6462166 complement(442525..442740) 1 NC_011060.1 PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0168 hypothetical protein; hypothetical protein 442740 6462166 Ppha_0455 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017398.1 442525 R 324925 CDS YP_002017399.1 194335605 6462164 complement(442761..443681) 1 NC_011060.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 443681 era 6462164 era Pelodictyon phaeoclathratiforme BU-1 GTP-binding protein Era YP_002017399.1 442761 R 324925 CDS YP_002017400.1 194335606 6462163 443787..445025 1 NC_011060.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: plt:Plut_1730 rod shape-determining protein RodA; rod shape-determining protein RodA 445025 6462163 Ppha_0457 Pelodictyon phaeoclathratiforme BU-1 rod shape-determining protein RodA YP_002017400.1 443787 D 324925 CDS YP_002017401.1 194335607 6462162 complement(445083..445538) 1 NC_011060.1 KEGG: plt:Plut_1729 hypothetical protein; hypothetical protein 445538 6462162 Ppha_0458 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017401.1 445083 R 324925 CDS YP_002017402.1 194335608 6462160 445711..447072 1 NC_011060.1 KEGG: cph:Cpha266_0422 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: radical SAM protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 447072 6462160 Ppha_0459 Pelodictyon phaeoclathratiforme BU-1 MiaB-like tRNA modifying protein YP_002017402.1 445711 D 324925 CDS YP_002017403.1 194335609 6462159 447124..447657 1 NC_011060.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 447657 6462159 Ppha_0460 Pelodictyon phaeoclathratiforme BU-1 adenine phosphoribosyltransferase YP_002017403.1 447124 D 324925 CDS YP_002017404.1 194335610 6462158 complement(447920..448228) 1 NC_011060.1 PFAM: histone family protein DNA-binding protein; KEGG: cph:Cpha266_0424 histone family protein DNA-binding protein; histone family protein DNA-binding protein 448228 6462158 Ppha_0461 Pelodictyon phaeoclathratiforme BU-1 histone family protein DNA-binding protein YP_002017404.1 447920 R 324925 CDS YP_002017405.1 194335611 6462149 complement(448266..448637) 1 NC_011060.1 KEGG: plt:Plut_1723 hypothetical protein; hypothetical protein 448637 6462149 Ppha_0462 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017405.1 448266 R 324925 CDS YP_002017406.1 194335612 6462146 complement(448656..450644) 1 NC_011060.1 KEGG: pvi:Cvib_1504 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 450644 6462146 Ppha_0463 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent metalloprotease FtsH YP_002017406.1 448656 R 324925 CDS YP_002017407.1 194335613 6462145 450892..452400 1 NC_011060.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 452400 gltX 6462145 gltX Pelodictyon phaeoclathratiforme BU-1 glutamyl-tRNA synthetase YP_002017407.1 450892 D 324925 CDS YP_002017408.1 194335614 6462142 452724..453854 1 NC_011060.1 PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase; hydroxyneurosporene synthase 453854 6462142 Ppha_0465 Pelodictyon phaeoclathratiforme BU-1 hydroxyneurosporene synthase YP_002017408.1 452724 D 324925 CDS YP_002017409.1 194335615 6462140 454026..454574 1 NC_011060.1 PFAM: Rieske [2Fe-2S] domain protein; Cytochrome b6-f complex Fe-S subunit; KEGG: cph:Cpha266_0429 Plastoquinol--plastocyanin reductase; Plastoquinol--plastocyanin reductase 454574 6462140 Ppha_0466 Pelodictyon phaeoclathratiforme BU-1 Plastoquinol--plastocyanin reductase YP_002017409.1 454026 D 324925 CDS YP_002017410.1 194335616 6462137 454610..455875 1 NC_011060.1 PFAM: Cytochrome b/b6 domain; KEGG: cph:Cpha266_0430 cytochrome b/b6, N-terminal domain; Cytochrome b/b6 domain 455875 6462137 Ppha_0467 Pelodictyon phaeoclathratiforme BU-1 Cytochrome b/b6 domain YP_002017410.1 454610 D 324925 CDS YP_002017411.1 194335617 6462129 complement(455997..459557) 1 NC_011060.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: plt:Plut_1717 alpha amylase, catalytic subdomain; alpha amylase catalytic protein 459557 6462129 Ppha_0468 Pelodictyon phaeoclathratiforme BU-1 alpha amylase catalytic protein YP_002017411.1 455997 R 324925 CDS YP_002017412.1 194335618 6462127 complement(459615..460010) 1 NC_011060.1 KEGG: cph:Cpha266_0432 hypothetical protein; hypothetical protein 460010 6462127 Ppha_0469 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017412.1 459615 R 324925 CDS YP_002017413.1 194335619 6462124 complement(459997..460395) 1 NC_011060.1 KEGG: cph:Cpha266_0433 hypothetical protein; hypothetical protein 460395 6462124 Ppha_0470 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017413.1 459997 R 324925 CDS YP_002017414.1 194335620 6462115 complement(460419..460694) 1 NC_011060.1 KEGG: cph:Cpha266_0434 hypothetical protein; hypothetical protein 460694 6462115 Ppha_0471 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017414.1 460419 R 324925 CDS YP_002017415.1 194335621 6462113 complement(460798..461535) 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: plt:Plut_1713 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 461535 6462113 Ppha_0472 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002017415.1 460798 R 324925 CDS YP_002017416.1 194335622 6462111 complement(461618..462673) 1 NC_011060.1 KEGG: cph:Cpha266_0452 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 462673 6462111 Ppha_0473 Pelodictyon phaeoclathratiforme BU-1 molybdate ABC transporter ATPase YP_002017416.1 461618 R 324925 CDS YP_002017417.1 194335623 6462106 complement(462670..463356) 1 NC_011060.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_0453 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit 463356 6462106 Ppha_0474 Pelodictyon phaeoclathratiforme BU-1 molybdate ABC transporter inner membrane subunit YP_002017417.1 462670 R 324925 CDS YP_002017418.1 194335624 6462103 complement(463403..464152) 1 NC_011060.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cph:Cpha266_0454 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 464152 6462103 Ppha_0475 Pelodictyon phaeoclathratiforme BU-1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_002017418.1 463403 R 324925 CDS YP_002017419.1 194335625 6462102 complement(464166..465020) 1 NC_011060.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cph:Cpha266_0455 ModD protein; modD protein 465020 6462102 Ppha_0476 Pelodictyon phaeoclathratiforme BU-1 modD protein YP_002017419.1 464166 R 324925 CDS YP_002017420.1 194335626 6462098 complement(465397..466113) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1685 ABC transporter related; ABC transporter-like protein 466113 6462098 Ppha_0477 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017420.1 465397 R 324925 CDS YP_002017421.1 194335627 6462093 complement(466107..468011) 1 NC_011060.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1684 ABC transporter related; ABC transporter-like protein 468011 6462093 Ppha_0478 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017421.1 466107 R 324925 CDS YP_002017422.1 194335628 6462092 complement(468022..468906) 1 NC_011060.1 PFAM: inner-membrane translocator; KEGG: cph:Cpha266_1683 inner-membrane translocator; inner-membrane translocator 468906 6462092 Ppha_0479 Pelodictyon phaeoclathratiforme BU-1 inner-membrane translocator YP_002017422.1 468022 R 324925 CDS YP_002017423.1 194335629 6462089 complement(468929..470152) 1 NC_011060.1 PFAM: Extracellular ligand-binding receptor; KEGG: cph:Cpha266_1682 extracellular ligand-binding receptor; extracellular ligand-binding receptor 470152 6462089 Ppha_0480 Pelodictyon phaeoclathratiforme BU-1 extracellular ligand-binding receptor YP_002017423.1 468929 R 324925 CDS YP_002017424.1 194335630 6462088 470429..471154 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0264 ATPase; ABC transporter-like protein 471154 6462088 Ppha_0481 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017424.1 470429 D 324925 CDS YP_002017425.1 194335631 6462083 471197..472735 1 NC_011060.1 KEGG: cph:Cpha266_0474 hypothetical protein; hypothetical protein 472735 6462083 Ppha_0482 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017425.1 471197 D 324925 CDS YP_002017426.1 194335632 6462079 472750..474774 1 NC_011060.1 KEGG: cch:Cag_0275 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 474774 6462079 Ppha_0483 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent DNA ligase YP_002017426.1 472750 D 324925 CDS YP_002017427.1 194335633 6462078 474844..475203 1 NC_011060.1 PFAM: VanZ family protein; KEGG: cph:Cpha266_0477 hypothetical protein; VanZ family protein 475203 6462078 Ppha_0484 Pelodictyon phaeoclathratiforme BU-1 VanZ family protein YP_002017427.1 474844 D 324925 CDS YP_002017428.1 194335634 6462071 complement(475244..475993) 1 NC_011060.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0478 demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase 475993 6462071 Ppha_0485 Pelodictyon phaeoclathratiforme BU-1 ubiquinone/menaquinone biosynthesis methyltransferase YP_002017428.1 475244 R 324925 CDS YP_002017429.1 194335635 6462070 complement(475977..476390) 1 NC_011060.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 476390 hisI 6462070 hisI Pelodictyon phaeoclathratiforme BU-1 phosphoribosyl-AMP cyclohydrolase YP_002017429.1 475977 R 324925 CDS YP_002017430.1 194335636 6462069 476562..477644 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0480 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 477644 6462069 Ppha_0487 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002017430.1 476562 D 324925 CDS YP_002017431.1 194335637 6462065 477663..478670 1 NC_011060.1 PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; ferrochelatase 478670 6462065 Ppha_0488 Pelodictyon phaeoclathratiforme BU-1 ferrochelatase YP_002017431.1 477663 D 324925 CDS YP_002017432.1 194335638 6462063 478747..479610 1 NC_011060.1 PFAM: protein of unknown function DUF88; KEGG: cph:Cpha266_0482 protein of unknown function DUF88; hypothetical protein 479610 6462063 Ppha_0489 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017432.1 478747 D 324925 CDS YP_002017433.1 194335639 6462059 complement(479616..480335) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0484 ABC transporter related; ABC transporter-like protein 480335 6462059 Ppha_0490 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017433.1 479616 R 324925 CDS YP_002017434.1 194335640 6462055 complement(480347..481114) 1 NC_011060.1 PFAM: cobalt transport protein; KEGG: cph:Cpha266_0485 cobalt transport protein; cobalt transport protein 481114 6462055 Ppha_0491 Pelodictyon phaeoclathratiforme BU-1 cobalt transport protein YP_002017434.1 480347 R 324925 CDS YP_002017435.1 194335641 6462054 complement(481114..482127) 1 NC_011060.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cph:Cpha266_0486 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM 482127 6462054 Ppha_0492 Pelodictyon phaeoclathratiforme BU-1 cobalamin (vitamin B12) biosynthesis protein CbiM YP_002017435.1 481114 R 324925 CDS YP_002017436.1 194335642 6462052 complement(482307..483740) 1 NC_011060.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase 483740 6462052 Ppha_0493 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase YP_002017436.1 482307 R 324925 CDS YP_002017437.1 194335643 6462050 complement(483844..484689) 1 NC_011060.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cph:Cpha266_0490 ferredoxin--NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha 484689 6462050 Ppha_0494 Pelodictyon phaeoclathratiforme BU-1 ferredoxin-NADP(+) reductase subunit alpha YP_002017437.1 483844 R 324925 CDS YP_002017438.1 194335644 6462046 484841..485446 1 NC_011060.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 485446 hisH 6462046 hisH Pelodictyon phaeoclathratiforme BU-1 imidazole glycerol phosphate synthase subunit HisH YP_002017438.1 484841 D 324925 CDS YP_002017439.1 194335645 6462043 485470..486240 1 NC_011060.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 486240 6462043 Ppha_0496 Pelodictyon phaeoclathratiforme BU-1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_002017439.1 485470 D 324925 CDS YP_002017440.1 194335646 6462042 486311..487054 1 NC_011060.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cch:Cag_0542 pseudouridine synthase, Rsu; pseudouridine synthase 487054 6462042 Ppha_0497 Pelodictyon phaeoclathratiforme BU-1 pseudouridine synthase YP_002017440.1 486311 D 324925 CDS YP_002017441.1 194335647 6462041 487091..489127 1 NC_011060.1 KEGG: pvi:Cvib_1472 hypothetical protein; hypothetical protein 489127 6462041 Ppha_0498 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017441.1 487091 D 324925 CDS YP_002017442.1 194335648 6462033 complement(489148..490101) 1 NC_011060.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cph:Cpha266_0496 translation factor SUA5; Sua5/YciO/YrdC/YwlC family protein 490101 6462033 Ppha_0499 Pelodictyon phaeoclathratiforme BU-1 Sua5/YciO/YrdC/YwlC family protein YP_002017442.1 489148 R 324925 CDS YP_002017443.1 194335649 6462032 complement(490125..490760) 1 NC_011060.1 PFAM: phosphatidate cytidylyltransferase; KEGG: pvi:Cvib_1470 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 490760 6462032 Ppha_0500 Pelodictyon phaeoclathratiforme BU-1 phosphatidate cytidylyltransferase YP_002017443.1 490125 R 324925 CDS YP_002017444.1 194335650 6462031 490931..492490 1 NC_011060.1 PFAM: Ppx/GppA phosphatase; KEGG: cch:Cag_0423 exopolyphosphatase; Ppx/GppA phosphatase 492490 6462031 Ppha_0501 Pelodictyon phaeoclathratiforme BU-1 Ppx/GppA phosphatase YP_002017444.1 490931 D 324925 CDS YP_002017445.1 194335651 6462030 492492..494624 1 NC_011060.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: cph:Cpha266_0499 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I 494624 6462030 Ppha_0502 Pelodictyon phaeoclathratiforme BU-1 para-aminobenzoate synthase subunit I YP_002017445.1 492492 D 324925 CDS YP_002017446.1 194335652 6462029 494690..495151 1 NC_011060.1 KEGG: pvi:Cvib_1467 hypothetical protein; hypothetical protein 495151 6462029 Ppha_0503 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017446.1 494690 D 324925 CDS YP_002017447.1 194335653 6462023 complement(495148..495786) 1 NC_011060.1 KEGG: pvi:Cvib_1466 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III 495786 6462023 Ppha_0504 Pelodictyon phaeoclathratiforme BU-1 endonuclease III YP_002017447.1 495148 R 324925 CDS YP_002017448.1 194335654 6462020 complement(495793..496308) 1 NC_011060.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cph:Cpha266_0502 NusB antitermination factor; NusB antitermination factor 496308 6462020 Ppha_0505 Pelodictyon phaeoclathratiforme BU-1 NusB antitermination factor YP_002017448.1 495793 R 324925 CDS YP_002017449.1 194335655 6462018 complement(496319..497020) 1 NC_011060.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pvi:Cvib_1463 haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase 497020 6462018 Ppha_0506 Pelodictyon phaeoclathratiforme BU-1 haloacid dehalogenase domain-containing protein hydrolase YP_002017449.1 496319 R 324925 CDS YP_002017450.1 194335656 6462012 497681..498274 1 NC_011060.1 KEGG: gur:Gura_0825 hypothetical protein; hypothetical protein 498274 6462012 Ppha_0508 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017450.1 497681 D 324925 CDS YP_002017451.1 194335657 6462011 complement(498299..498577) 1 NC_011060.1 hypothetical protein 498577 6462011 Ppha_0509 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017451.1 498299 R 324925 CDS YP_002017452.1 194335658 6462010 complement(498615..499496) 1 NC_011060.1 KEGG: cph:Cpha266_0505 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 499496 6462010 Ppha_0510 Pelodictyon phaeoclathratiforme BU-1 dihydropteroate synthase YP_002017452.1 498615 R 324925 CDS YP_002017453.1 194335659 6462009 complement(499496..500488) 1 NC_011060.1 PFAM: peptidase M50; KEGG: cph:Cpha266_0506 peptidase M50; peptidase M50 500488 6462009 Ppha_0511 Pelodictyon phaeoclathratiforme BU-1 peptidase M50 YP_002017453.1 499496 R 324925 CDS YP_002017454.1 194335660 6462007 complement(500495..500938) 1 NC_011060.1 KEGG: cph:Cpha266_0507 cytochrome c; cytochrome c 500938 6462007 Ppha_0512 Pelodictyon phaeoclathratiforme BU-1 cytochrome c YP_002017454.1 500495 R 324925 CDS YP_002017455.1 194335661 6462005 501080..502909 1 NC_011060.1 PFAM: cobalamin B12-binding domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0114 elongator protein 3/MiaB/NifB; radical SAM protein 502909 6462005 Ppha_0513 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017455.1 501080 D 324925 CDS YP_002017456.1 194335662 6462003 502923..504722 1 NC_011060.1 KEGG: cph:Cpha266_0053 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 504722 6462003 Ppha_0514 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent DNA helicase RecQ YP_002017456.1 502923 D 324925 CDS YP_002017457.1 194335663 6462001 504816..505064 1 NC_011060.1 KEGG: cph:Cpha266_2644 hypothetical protein; hypothetical protein 505064 6462001 Ppha_0515 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017457.1 504816 D 324925 CDS YP_002017458.1 194335664 6462000 505220..505486 1 NC_011060.1 KEGG: scl:sce5011 hypothetical protein; hypothetical protein 505486 6462000 Ppha_0516 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017458.1 505220 D 324925 CDS YP_002017459.1 194335665 6461997 506081..506626 1 NC_011060.1 KEGG: cph:Cpha266_2650 hypothetical protein; hypothetical protein 506626 6461997 Ppha_0518 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017459.1 506081 D 324925 CDS YP_002017460.1 194335666 6461993 506645..509104 1 NC_011060.1 KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular polysaccharide biosynthesis protein 509104 6461993 Ppha_0519 Pelodictyon phaeoclathratiforme BU-1 capsular polysaccharide biosynthesis protein YP_002017460.1 506645 D 324925 CDS YP_002017461.1 194335667 6461987 509135..511078 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_2635 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 511078 6461987 Ppha_0520 Pelodictyon phaeoclathratiforme BU-1 polysaccharide biosynthesis protein CapD YP_002017461.1 509135 D 324925 CDS YP_002017462.1 194335668 6461986 511180..511437 1 NC_011060.1 PFAM: DNA polymerase beta domain protein region; KEGG: cch:Cag_1383 hypothetical protein; DNA polymerase beta domain-containing protein 511437 6461986 Ppha_0521 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase beta domain-containing protein YP_002017462.1 511180 D 324925 CDS YP_002017463.1 194335669 6461985 511434..511919 1 NC_011060.1 KEGG: mmw:Mmwyl1_0818 hypothetical protein; hypothetical protein 511919 6461985 Ppha_0522 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017463.1 511434 D 324925 CDS YP_002017464.1 194335670 6461978 512122..513837 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0616 ABC transporter related; ABC transporter-like protein 513837 6461978 Ppha_0523 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017464.1 512122 D 324925 CDS YP_002017465.1 194335671 6461973 513879..514877 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lic:LIC12176 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 514877 6461973 Ppha_0524 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002017465.1 513879 D 324925 CDS YP_002017466.1 194335672 6461971 514874..516061 1 NC_011060.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12175 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 516061 6461971 Ppha_0525 Pelodictyon phaeoclathratiforme BU-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_002017466.1 514874 D 324925 CDS YP_002017467.1 194335673 6461967 516058..516687 1 NC_011060.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: lic:LIC12174 acetyl transferase; transferase hexapeptide repeat containing protein 516687 6461967 Ppha_0526 Pelodictyon phaeoclathratiforme BU-1 transferase hexapeptide repeat containing protein YP_002017467.1 516058 D 324925 CDS YP_002017468.1 194335674 6461965 516684..517691 1 NC_011060.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: syw:SYNW0448 N-acetylneuraminic acid synthetase; N-acylneuraminate-9-phosphate synthase 517691 6461965 Ppha_0527 Pelodictyon phaeoclathratiforme BU-1 N-acylneuraminate-9-phosphate synthase YP_002017468.1 516684 D 324925 CDS YP_002017469.1 194335675 6461962 517688..518851 1 NC_011060.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: syw:SYNW0449 N-acetylglucosamine-6-phosphate 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 518851 6461962 Ppha_0528 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylglucosamine 2-epimerase YP_002017469.1 517688 D 324925 CDS YP_002017470.1 194335676 6461956 518867..519925 1 NC_011060.1 PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: tdn:Tmden_0598 nucleotidyl transferase; nucleotidyl transferase 519925 6461956 Ppha_0529 Pelodictyon phaeoclathratiforme BU-1 nucleotidyl transferase YP_002017470.1 518867 D 324925 CDS YP_002017471.1 194335677 6461954 519935..521257 1 NC_011060.1 KEGG: lpc:LPC_2544 LPS biosynthesis protein, PseA-like protein; LPS biosynthesis protein, PseA-like protein 521257 6461954 Ppha_0530 Pelodictyon phaeoclathratiforme BU-1 LPS biosynthesis protein, PseA-like protein YP_002017471.1 519935 D 324925 CDS YP_002017472.1 194335678 6461953 521267..522037 1 NC_011060.1 PFAM: histidine biosynthesis protein; KEGG: lpc:LPC_2543 imidazole glycerol phosphate synthase, cyclase subunit HisF; histidine biosynthesis protein 522037 6461953 Ppha_0531 Pelodictyon phaeoclathratiforme BU-1 histidine biosynthesis protein YP_002017472.1 521267 D 324925 CDS YP_002017473.1 194335679 6461943 522024..522671 1 NC_011060.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 522671 hisH 6461943 hisH Pelodictyon phaeoclathratiforme BU-1 imidazole glycerol phosphate synthase subunit HisH YP_002017473.1 522024 D 324925 CDS YP_002017474.1 194335680 6461937 522685..523698 1 NC_011060.1 PFAM: oxidoreductase domain protein; KEGG: pmf:P9303_01161 hypothetical protein; oxidoreductase domain-containing protein 523698 6461937 Ppha_0533 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase domain-containing protein YP_002017474.1 522685 D 324925 CDS YP_002017475.1 194335681 6461933 523695..524399 1 NC_011060.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: dvl:Dvul_2588 N-acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 524399 6461933 Ppha_0534 Pelodictyon phaeoclathratiforme BU-1 acylneuraminate cytidylyltransferase YP_002017475.1 523695 D 324925 CDS YP_002017476.1 194335682 6461932 524396..525199 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2393 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 525199 6461932 Ppha_0535 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002017476.1 524396 D 324925 CDS YP_002017477.1 194335683 6461930 525193..525756 1 NC_011060.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: vvy:VV0322 acetyltransferase; transferase hexapeptide repeat containing protein 525756 6461930 Ppha_0536 Pelodictyon phaeoclathratiforme BU-1 transferase hexapeptide repeat containing protein YP_002017477.1 525193 D 324925 CDS YP_002017478.1 194335684 6461929 525781..527061 1 NC_011060.1 KEGG: aeh:Mlg_2331 hypothetical protein; hypothetical protein 527061 6461929 Ppha_0537 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017478.1 525781 D 324925 CDS YP_002017479.1 194335685 6461925 527054..527740 1 NC_011060.1 TIGRFAM: methyltransferase FkbM family; KEGG: ava:Ava_1043 methyltransferase FkbM; FkbM family methyltransferase 527740 6461925 Ppha_0538 Pelodictyon phaeoclathratiforme BU-1 FkbM family methyltransferase YP_002017479.1 527054 D 324925 CDS YP_002017480.1 194335686 6461919 528006..528479 1 NC_011060.1 KEGG: cph:Cpha266_2625 transposase; transposase 528479 6461919 Ppha_0539 Pelodictyon phaeoclathratiforme BU-1 transposase YP_002017480.1 528006 D 324925 CDS YP_002017481.1 194335687 6461916 528575..529138 1 NC_011060.1 KEGG: cph:Cpha266_2626 transposase; transposase 529138 6461916 Ppha_0540 Pelodictyon phaeoclathratiforme BU-1 transposase YP_002017481.1 528575 D 324925 CDS YP_002017482.1 194335688 6461895 533895..535049 1 NC_011060.1 KEGG: cau:Caur_2124 hypothetical protein; hypothetical protein 535049 6461895 Ppha_0547 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017482.1 533895 D 324925 CDS YP_002017483.1 194335689 6461860 538890..540155 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: bfr:BF2784 glycosyltransferase; group 1 glycosyl transferase 540155 6461860 Ppha_0553 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017483.1 538890 D 324925 CDS YP_002017484.1 194335690 6461858 540310..541503 1 NC_011060.1 KEGG: dps:DPPB82 related to polysaccharide transport proteins; hypothetical protein 541503 6461858 Ppha_0554 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017484.1 540310 D 324925 CDS YP_002017485.1 194335691 6461854 541664..542602 1 NC_011060.1 hypothetical protein 542602 6461854 Ppha_0555 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017485.1 541664 D 324925 CDS YP_002017486.1 194335692 6461851 542618..543958 1 NC_011060.1 KEGG: syn:slr2118 hypothetical protein; hypothetical protein 543958 6461851 Ppha_0556 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017486.1 542618 D 324925 CDS YP_002017487.1 194335693 6461849 543955..545154 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: sus:Acid_4655 glycosyl transferase, group 1; group 1 glycosyl transferase 545154 6461849 Ppha_0557 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017487.1 543955 D 324925 CDS YP_002017488.1 194335694 6461847 545187..546209 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: gur:Gura_1672 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 546209 6461847 Ppha_0558 Pelodictyon phaeoclathratiforme BU-1 polysaccharide biosynthesis protein CapD YP_002017488.1 545187 D 324925 CDS YP_002017489.1 194335695 6461846 546226..547344 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 547344 6461846 Ppha_0559 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002017489.1 546226 D 324925 CDS YP_002017490.1 194335696 6461842 547393..548505 1 NC_011060.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: gur:Gura_1696 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 548505 6461842 Ppha_0560 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylglucosamine 2-epimerase YP_002017490.1 547393 D 324925 CDS YP_002017491.1 194335697 6461836 548632..549132 1 NC_011060.1 KEGG: bxe:Bxe_C1079 acetyltransferase; acetyltransferase 549132 6461836 Ppha_0561 Pelodictyon phaeoclathratiforme BU-1 acetyltransferase YP_002017491.1 548632 D 324925 CDS YP_002017492.1 194335698 6461834 549369..549920 1 NC_011060.1 KEGG: pna:Pnap_3182 acetyltransferase; acetyltransferase 549920 6461834 Ppha_0562 Pelodictyon phaeoclathratiforme BU-1 acetyltransferase YP_002017492.1 549369 D 324925 CDS YP_002017493.1 194335699 6461830 549913..550173 1 NC_011060.1 KEGG: mca:MCA1164 methyltransferase domain protein; methyltransferase domain-containing protein 550173 6461830 Ppha_0563 Pelodictyon phaeoclathratiforme BU-1 methyltransferase domain-containing protein YP_002017493.1 549913 D 324925 CDS YP_002017494.1 194335700 6461828 551811..552362 1 NC_011060.1 KEGG: ret:RHE_CH03209 methyltransferase; hypothetical protein 552362 6461828 Ppha_0565 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017494.1 551811 D 324925 CDS YP_002017495.1 194335701 6461826 552359..553261 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: bvu:BVU_2654 glycosyltransferase family 2; family 2 glycosyl transferase 553261 6461826 Ppha_0566 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017495.1 552359 D 324925 CDS YP_002017496.1 194335702 6461824 553277..554035 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: rma:Rmag_0889 glycosyl transferase, family 2; family 2 glycosyl transferase 554035 6461824 Ppha_0567 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017496.1 553277 D 324925 CDS YP_002017497.1 194335703 6461823 554032..555000 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_2616 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 555000 6461823 Ppha_0568 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002017497.1 554032 D 324925 CDS YP_002017498.1 194335704 6461822 555033..555593 1 NC_011060.1 PFAM: sugar transferase; KEGG: cph:Cpha266_2615 sugar transferase; sugar transferase 555593 6461822 Ppha_0569 Pelodictyon phaeoclathratiforme BU-1 sugar transferase YP_002017498.1 555033 D 324925 CDS YP_002017499.1 194335705 6461820 555599..556579 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_2610 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 556579 6461820 Ppha_0570 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002017499.1 555599 D 324925 CDS YP_002017500.1 194335706 6461818 556586..557728 1 NC_011060.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_2608 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 557728 6461818 Ppha_0571 Pelodictyon phaeoclathratiforme BU-1 GDP-mannose 4,6-dehydratase YP_002017500.1 556586 D 324925 CDS YP_002017501.1 194335707 6461815 558478..559071 1 NC_011060.1 KEGG: cph:Cpha266_2607 acetyltransferase; acetyltransferase 559071 6461815 Ppha_0572 Pelodictyon phaeoclathratiforme BU-1 acetyltransferase YP_002017501.1 558478 D 324925 CDS YP_002017502.1 194335708 6461813 559230..560444 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: eba:ebA5893 predicted glycosyltransferase; group 1 glycosyl transferase 560444 6461813 Ppha_0573 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017502.1 559230 D 324925 CDS YP_002017503.1 194335709 6461812 560453..561055 1 NC_011060.1 PFAM: sugar transferase; KEGG: rrs:RoseRS_4262 undecaprenyl-phosphate galactose phosphotransferase; undecaprenyl-phosphate galactose phosphotransferase 561055 6461812 Ppha_0574 Pelodictyon phaeoclathratiforme BU-1 undecaprenyl-phosphate galactose phosphotransferase YP_002017503.1 560453 D 324925 CDS YP_002017504.1 194335710 6461810 561120..561362 1 NC_011060.1 KEGG: pat:Patl_3073 hypothetical protein; hypothetical protein 561362 6461810 Ppha_0575 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017504.1 561120 D 324925 CDS YP_002017505.1 194335711 6461807 561359..562684 1 NC_011060.1 PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_3072 hypothetical protein; AMP-dependent synthetase and ligase 562684 6461807 Ppha_0576 Pelodictyon phaeoclathratiforme BU-1 AMP-dependent synthetase and ligase YP_002017505.1 561359 D 324925 CDS YP_002017506.1 194335712 6461806 562681..563406 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_3071 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 563406 6461806 Ppha_0577 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002017506.1 562681 D 324925 CDS YP_002017507.1 194335713 6461805 563424..564026 1 NC_011060.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: bxe:Bxe_A2414 O-acyltransferase, CysE/LacA/LpxA/NodL family; transferase hexapeptide repeat containing protein 564026 6461805 Ppha_0578 Pelodictyon phaeoclathratiforme BU-1 transferase hexapeptide repeat containing protein YP_002017507.1 563424 D 324925 CDS YP_002017508.1 194335714 6461802 564100..565284 1 NC_011060.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rme:Rmet_2724 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 565284 6461802 Ppha_0579 Pelodictyon phaeoclathratiforme BU-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_002017508.1 564100 D 324925 CDS YP_002017509.1 194335715 6461799 complement(565295..565987) 1 NC_011060.1 KEGG: hch:HCH_03424 hypothetical protein; hypothetical protein 565987 6461799 Ppha_0580 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017509.1 565295 R 324925 CDS YP_002017510.1 194335716 6461797 complement(565968..566843) 1 NC_011060.1 KEGG: tbd:Tbd_1792 hypothetical protein; hypothetical protein 566843 6461797 Ppha_0581 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017510.1 565968 R 324925 CDS YP_002017511.1 194335717 6461796 complement(566843..567772) 1 NC_011060.1 KEGG: cte:CT0711 hypothetical protein; hypothetical protein 567772 6461796 Ppha_0582 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017511.1 566843 R 324925 CDS YP_002017512.1 194335718 6461791 complement(569731..570120) 1 NC_011060.1 KEGG: cte:CT0711 hypothetical protein; hypothetical protein 570120 6461791 Ppha_0584 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017512.1 569731 R 324925 CDS YP_002017513.1 194335719 6461788 complement(570117..570605) 1 NC_011060.1 KEGG: noc:Noc_0212 protein of unknown function DUF1555; hypothetical protein 570605 6461788 Ppha_0585 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017513.1 570117 R 324925 CDS YP_002017514.1 194335720 6461787 complement(570953..571891) 1 NC_011060.1 KEGG: pol:Bpro_1359 hypothetical protein; hypothetical protein 571891 6461787 Ppha_0586 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017514.1 570953 R 324925 CDS YP_002017515.1 194335721 6461786 complement(571882..572676) 1 NC_011060.1 KEGG: cch:Cag_0645 hypothetical protein; hypothetical protein 572676 6461786 Ppha_0587 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017515.1 571882 R 324925 CDS YP_002017516.1 194335722 6461781 573962..575104 1 NC_011060.1 TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_2608 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 575104 6461781 Ppha_0589 Pelodictyon phaeoclathratiforme BU-1 GDP-mannose 4,6-dehydratase YP_002017516.1 573962 D 324925 CDS YP_002017517.1 194335723 6461780 575171..575425 1 NC_011060.1 KEGG: cph:Cpha266_2602 hypothetical protein; hypothetical protein 575425 6461780 Ppha_0590 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017517.1 575171 D 324925 CDS YP_002017518.1 194335724 6461777 575422..575622 1 NC_011060.1 KEGG: cph:Cpha266_2601 hypothetical protein; hypothetical protein 575622 6461777 Ppha_0591 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017518.1 575422 D 324925 CDS YP_002017519.1 194335725 6461775 complement(576182..576508) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0084 transcriptional regulator, XRE family; XRE family transcriptional regulator 576508 6461775 Ppha_0593 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017519.1 576182 R 324925 CDS YP_002017520.1 194335726 6461769 577171..578376 1 NC_011060.1 KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 578376 6461769 Ppha_0596 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017520.1 577171 D 324925 CDS YP_002017521.1 194335727 6461765 578711..579703 1 NC_011060.1 KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 579703 6461765 Ppha_0597 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017521.1 578711 D 324925 CDS YP_002017522.1 194335728 6461764 579782..580672 1 NC_011060.1 KEGG: cch:Cag_1091 hypothetical protein; hypothetical protein 580672 6461764 Ppha_0598 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017522.1 579782 D 324925 CDS YP_002017523.1 194335729 6461763 580881..581840 1 NC_011060.1 KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 581840 6461763 Ppha_0599 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017523.1 580881 D 324925 CDS YP_002017524.1 194335730 6461753 complement(582398..582724) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0084 transcriptional regulator, XRE family; XRE family transcriptional regulator 582724 6461753 Ppha_0601 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017524.1 582398 R 324925 CDS YP_002017525.1 194335731 6461750 complement(583088..584350) 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_0352 transposase, IS4 family protein; transposase IS4 family protein 584350 6461750 Ppha_0603 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002017525.1 583088 R 324925 CDS YP_002017526.1 194335732 6461746 585353..585643 1 NC_011060.1 SMART: helix-turn-helix domain protein; KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain protein; XRE family transcriptional regulator 585643 6461746 Ppha_0605 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017526.1 585353 D 324925 CDS YP_002017527.1 194335733 6461736 586419..586634 1 NC_011060.1 KEGG: cph:Cpha266_2604 hypothetical protein; hypothetical protein 586634 6461736 Ppha_0607 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017527.1 586419 D 324925 CDS YP_002017528.1 194335734 6461733 586649..587044 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_1292 hypothetical protein; PilT protein domain-containing protein 587044 6461733 Ppha_0608 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002017528.1 586649 D 324925 CDS YP_002017529.1 194335735 6461731 587428..587940 1 NC_011060.1 hypothetical protein 587940 6461731 Ppha_0610 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017529.1 587428 D 324925 CDS YP_002017530.1 194335736 6461730 complement(588301..588483) 1 NC_011060.1 hypothetical protein 588483 6461730 Ppha_0611 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017530.1 588301 R 324925 CDS YP_002017531.1 194335737 6461729 complement(588690..589520) 1 NC_011060.1 PFAM: legume lectin beta domain; KEGG: dar:Daro_1504 legume lectin, beta domain:protein of unknown function DUF1555; legume lectin beta domain 589520 6461729 Ppha_0612 Pelodictyon phaeoclathratiforme BU-1 legume lectin beta domain YP_002017531.1 588690 R 324925 CDS YP_002017532.1 194335738 6461728 complement(589667..590449) 1 NC_011060.1 KEGG: nar:Saro_0424 hypothetical protein; hypothetical protein 590449 6461728 Ppha_0613 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017532.1 589667 R 324925 CDS YP_002017533.1 194335739 6461724 complement(590660..591166) 1 NC_011060.1 KEGG: cph:Cpha266_1384 transposase family protein; transposase family protein 591166 6461724 Ppha_0614 Pelodictyon phaeoclathratiforme BU-1 transposase family protein YP_002017533.1 590660 R 324925 CDS YP_002017534.1 194335740 6461723 591471..592373 1 NC_011060.1 KEGG: cch:Cag_1091 hypothetical protein; hypothetical protein 592373 6461723 Ppha_0615 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017534.1 591471 D 324925 CDS YP_002017535.1 194335741 6461722 592374..593528 1 NC_011060.1 KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 593528 6461722 Ppha_0616 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017535.1 592374 D 324925 CDS YP_002017536.1 194335742 6461720 593560..593835 1 NC_011060.1 KEGG: cch:Cag_0661 hypothetical protein; hypothetical protein 593835 6461720 Ppha_0617 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017536.1 593560 D 324925 CDS YP_002017537.1 194335743 6461719 593837..594001 1 NC_011060.1 hypothetical protein 594001 6461719 Ppha_0618 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017537.1 593837 D 324925 CDS YP_002017538.1 194335744 6461718 594004..594195 1 NC_011060.1 KEGG: cch:Cag_0684 hypothetical protein; hypothetical protein 594195 6461718 Ppha_0619 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017538.1 594004 D 324925 CDS YP_002017539.1 194335745 6461715 596537..596827 1 NC_011060.1 hypothetical protein 596827 6461715 Ppha_0622 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017539.1 596537 D 324925 CDS YP_002017540.1 194335746 6461714 596939..598237 1 NC_011060.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cte:CT0227 UDP-glucose/GDP-mannose dehydrogenase family protein; nucleotide sugar dehydrogenase 598237 6461714 Ppha_0623 Pelodictyon phaeoclathratiforme BU-1 nucleotide sugar dehydrogenase YP_002017540.1 596939 D 324925 CDS YP_002017541.1 194335747 6461713 599107..599499 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 599499 6461713 Ppha_0624 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017541.1 599107 D 324925 CDS YP_002017542.1 194335748 6461711 600029..600775 1 NC_011060.1 PFAM: protein of unknown function DUF218; KEGG: cte:CT0624 hypothetical protein; hypothetical protein 600775 6461711 Ppha_0625 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017542.1 600029 D 324925 CDS YP_002017543.1 194335749 6461705 601035..601625 1 NC_011060.1 PFAM: KOW domain protein; NGN domain protein; KEGG: cch:Cag_0149 NusG antitermination factor; NusG antitermination factor 601625 6461705 Ppha_0626 Pelodictyon phaeoclathratiforme BU-1 NusG antitermination factor YP_002017543.1 601035 D 324925 CDS YP_002017544.1 194335750 6461696 601745..602998 1 NC_011060.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0514 major facilitator superfamily MFS_1; major facilitator superfamily protein 602998 6461696 Ppha_0627 Pelodictyon phaeoclathratiforme BU-1 major facilitator superfamily protein YP_002017544.1 601745 D 324925 CDS YP_002017545.1 194335751 6461695 complement(603068..605908) 1 NC_011060.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: plt:Plut_1662 excinuclease ABC, A subunit; excinuclease ABC subunit A 605908 6461695 Ppha_0628 Pelodictyon phaeoclathratiforme BU-1 excinuclease ABC subunit A YP_002017545.1 603068 R 324925 CDS YP_002017546.1 194335752 6461692 complement(606154..608904) 1 NC_011060.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 608904 6461692 Ppha_0629 Pelodictyon phaeoclathratiforme BU-1 pyruvate phosphate dikinase YP_002017546.1 606154 R 324925 CDS YP_002017547.1 194335753 6461691 609055..609936 1 NC_011060.1 PFAM: inner-membrane translocator; KEGG: pvi:Cvib_1448 inner-membrane translocator; inner-membrane translocator 609936 6461691 Ppha_0630 Pelodictyon phaeoclathratiforme BU-1 inner-membrane translocator YP_002017547.1 609055 D 324925 CDS YP_002017548.1 194335754 6461685 610441..632142 1 NC_011060.1 TIGRFAM: outer membrane adhesin like proteiin; KEGG: cph:Cpha266_1846 outer membrane adhesin like proteiin; outer membrane adhesin-like protein 632142 6461685 Ppha_0632 Pelodictyon phaeoclathratiforme BU-1 outer membrane adhesin-like protein YP_002017548.1 610441 D 324925 CDS YP_002017549.1 194335755 6461683 632142..633596 1 NC_011060.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1845 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 633596 6461683 Ppha_0633 Pelodictyon phaeoclathratiforme BU-1 TolC family type I secretion outer membrane protein YP_002017549.1 632142 D 324925 CDS YP_002017550.1 194335756 6461681 633655..634368 1 NC_011060.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_1844 hypothetical protein; PpiC-type peptidyl-prolyl cis-trans isomerase 634368 6461681 Ppha_0634 Pelodictyon phaeoclathratiforme BU-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_002017550.1 633655 D 324925 CDS YP_002017551.1 194335757 6461674 634425..637475 1 NC_011060.1 PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter 637475 6461674 Ppha_0635 Pelodictyon phaeoclathratiforme BU-1 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter YP_002017551.1 634425 D 324925 CDS YP_002017552.1 194335758 6461671 637472..638461 1 NC_011060.1 PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1842 secretion protein HlyD family protein; secretion protein HlyD family protein 638461 6461671 Ppha_0636 Pelodictyon phaeoclathratiforme BU-1 secretion protein HlyD family protein YP_002017552.1 637472 D 324925 CDS YP_002017553.1 194335759 6461661 638569..652038 1 NC_011060.1 PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 hypothetical protein-containing protein; hypothetical protein 652038 6461661 Ppha_0637 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017553.1 638569 D 324925 CDS YP_002017554.1 194335760 6461655 652082..652864 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1547 hypothetical protein; family 2 glycosyl transferase 652864 6461655 Ppha_0638 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017554.1 652082 D 324925 CDS YP_002017555.1 194335761 6461654 653069..653818 1 NC_011060.1 KEGG: gfo:GFO_0545 hypothetical protein; hypothetical protein 653818 6461654 Ppha_0639 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017555.1 653069 D 324925 CDS YP_002017556.1 194335762 6461652 654295..654807 1 NC_011060.1 KEGG: sit:TM1040_1486 hypothetical protein; hypothetical protein 654807 6461652 Ppha_0640 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017556.1 654295 D 324925 CDS YP_002017557.1 194335763 6461651 655353..658637 1 NC_011060.1 PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_4; hypothetical protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 hypothetical protein-containing protein; hypothetical protein 658637 6461651 Ppha_0641 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017557.1 655353 D 324925 CDS YP_002017558.1 194335764 6461647 658936..659619 1 NC_011060.1 KEGG: cph:Cpha266_1326 pentapeptide repeat protein; hypothetical protein 659619 6461647 Ppha_0642 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017558.1 658936 D 324925 CDS YP_002017559.1 194335765 6461640 659918..660415 1 NC_011060.1 KEGG: cph:Cpha266_1326 pentapeptide repeat protein; hypothetical protein 660415 6461640 Ppha_0643 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017559.1 659918 D 324925 CDS YP_002017560.1 194335766 6461639 660682..661224 1 NC_011060.1 PFAM: isochorismatase hydrolase; KEGG: cph:Cpha266_0525 isochorismatase hydrolase; isochorismatase hydrolase 661224 6461639 Ppha_0644 Pelodictyon phaeoclathratiforme BU-1 isochorismatase hydrolase YP_002017560.1 660682 D 324925 CDS YP_002017561.1 194335767 6461637 complement(661279..662346) 1 NC_011060.1 KEGG: cch:Cag_0169 tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 662346 6461637 Ppha_0645 Pelodictyon phaeoclathratiforme BU-1 tetraacyldisaccharide 4'-kinase YP_002017561.1 661279 R 324925 CDS YP_002017562.1 194335768 6461636 complement(662339..662950) 1 NC_011060.1 PFAM: protein of unknown function DUF374; KEGG: cch:Cag_0170 hypothetical protein; hypothetical protein 662950 6461636 Ppha_0646 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017562.1 662339 R 324925 CDS YP_002017563.1 194335769 6461631 663127..664407 1 NC_011060.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 664407 6461631 Ppha_0647 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylamine--glycine ligase YP_002017563.1 663127 D 324925 CDS YP_002017564.1 194335770 6461624 664429..664860 1 NC_011060.1 KEGG: cch:Cag_0172 hypothetical protein; hypothetical protein 664860 6461624 Ppha_0648 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017564.1 664429 D 324925 CDS YP_002017565.1 194335771 6461621 664952..666430 1 NC_011060.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: cch:Cag_0173 carbamoyl-phosphate synthase, medium subunit; Carbamoyl-phosphate synthase L chain ATP-binding 666430 6461621 Ppha_0649 Pelodictyon phaeoclathratiforme BU-1 Carbamoyl-phosphate synthase L chain ATP-binding YP_002017565.1 664952 D 324925 CDS YP_002017566.1 194335772 6461620 666440..667210 1 NC_011060.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 667210 trpC 6461620 trpC Pelodictyon phaeoclathratiforme BU-1 indole-3-glycerol-phosphate synthase YP_002017566.1 666440 D 324925 CDS YP_002017567.1 194335773 6461619 complement(667197..667862) 1 NC_011060.1 PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: cch:Cag_0175 ribulose-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase 667862 6461619 Ppha_0651 Pelodictyon phaeoclathratiforme BU-1 Ribulose-phosphate 3-epimerase YP_002017567.1 667197 R 324925 CDS YP_002017568.1 194335774 6461617 complement(667908..670112) 1 NC_011060.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15); surface antigen (D15) 670112 6461617 Ppha_0652 Pelodictyon phaeoclathratiforme BU-1 surface antigen (D15) YP_002017568.1 667908 R 324925 CDS YP_002017569.1 194335775 6461614 complement(670132..670359) 1 NC_011060.1 KEGG: plt:Plut_1647 hypothetical protein; hypothetical protein 670359 6461614 Ppha_0653 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017569.1 670132 R 324925 CDS YP_002017570.1 194335776 6461610 complement(670384..671208) 1 NC_011060.1 PFAM: Peptidase M23; KEGG: cph:Cpha266_0535 peptidase M23B; peptidase M23 671208 6461610 Ppha_0654 Pelodictyon phaeoclathratiforme BU-1 peptidase M23 YP_002017570.1 670384 R 324925 CDS YP_002017571.1 194335777 6461609 complement(671248..674082) 1 NC_011060.1 KEGG: plt:Plut_1645 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I 674082 6461609 Ppha_0655 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase I YP_002017571.1 671248 R 324925 CDS YP_002017572.1 194335778 6461608 complement(674079..674909) 1 NC_011060.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: cph:Cpha266_0537 prephenate dehydratase; Prephenate dehydratase 674909 6461608 Ppha_0656 Pelodictyon phaeoclathratiforme BU-1 Prephenate dehydratase YP_002017572.1 674079 R 324925 CDS YP_002017573.1 194335779 6461606 675038..675790 1 NC_011060.1 PFAM: protein of unknown function DUF28; KEGG: cch:Cag_0165 hypothetical protein; hypothetical protein 675790 6461606 Ppha_0657 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017573.1 675038 D 324925 CDS YP_002017574.1 194335780 6461604 675795..676370 1 NC_011060.1 KEGG: cph:Cpha266_0539 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 676370 6461604 Ppha_0658 Pelodictyon phaeoclathratiforme BU-1 crossover junction endodeoxyribonuclease RuvC YP_002017574.1 675795 D 324925 CDS YP_002017575.1 194335781 6461597 676381..676935 1 NC_011060.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: plt:Plut_1641 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 676935 6461597 Ppha_0659 Pelodictyon phaeoclathratiforme BU-1 CDP-alcohol phosphatidyltransferase YP_002017575.1 676381 D 324925 CDS YP_002017576.1 194335782 6461593 complement(677334..678737) 1 NC_011060.1 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase 678737 6461593 Ppha_0660 Pelodictyon phaeoclathratiforme BU-1 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase YP_002017576.1 677334 R 324925 CDS YP_002017577.1 194335783 6461592 complement(678887..679684) 1 NC_011060.1 PFAM: inositol monophosphatase; KEGG: cph:Cpha266_0543 inositol-phosphate phosphatase; inositol-phosphate phosphatase 679684 6461592 Ppha_0661 Pelodictyon phaeoclathratiforme BU-1 inositol-phosphate phosphatase YP_002017577.1 678887 R 324925 CDS YP_002017578.1 194335784 6461591 679836..680312 1 NC_011060.1 PFAM: TspO/MBR family protein; KEGG: cph:Cpha266_0544 TspO and MBR like proteins; TspO and MBR-like protein 680312 6461591 Ppha_0662 Pelodictyon phaeoclathratiforme BU-1 TspO and MBR-like protein YP_002017578.1 679836 D 324925 CDS YP_002017579.1 194335785 6461590 complement(680401..680874) 1 NC_011060.1 KEGG: cph:Cpha266_0064 hypothetical protein; hypothetical protein 680874 6461590 Ppha_0663 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017579.1 680401 R 324925 CDS YP_002017580.1 194335786 6461587 complement(681089..683092) 1 NC_011060.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 683092 6461587 Ppha_0664 Pelodictyon phaeoclathratiforme BU-1 acetyl-CoA synthetase YP_002017580.1 681089 R 324925 CDS YP_002017581.1 194335787 6461585 complement(683275..685698) 1 NC_011060.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 685698 leuS 6461585 leuS Pelodictyon phaeoclathratiforme BU-1 leucyl-tRNA synthetase YP_002017581.1 683275 R 324925 CDS YP_002017582.1 194335788 6461580 complement(685791..687977) 1 NC_011060.1 KEGG: cch:Cag_1689 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 687977 6461580 Ppha_0666 Pelodictyon phaeoclathratiforme BU-1 polynucleotide phosphorylase/polyadenylase YP_002017582.1 685791 R 324925 CDS YP_002017583.1 194335789 6461575 complement(688092..688943) 1 NC_011060.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 688943 panC 6461575 panC Pelodictyon phaeoclathratiforme BU-1 pantoate--beta-alanine ligase YP_002017583.1 688092 R 324925 CDS YP_002017584.1 194335790 6461573 complement(688927..689661) 1 NC_011060.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: plt:Plut_1633 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 689661 6461573 Ppha_0668 Pelodictyon phaeoclathratiforme BU-1 uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002017584.1 688927 R 324925 CDS YP_002017585.1 194335791 6461572 689759..690745 1 NC_011060.1 KEGG: plt:Plut_1632 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 690745 6461572 Ppha_0669 Pelodictyon phaeoclathratiforme BU-1 oligopeptide/dipeptide ABC transporter ATPase YP_002017585.1 689759 D 324925 CDS YP_002017586.1 194335792 6461571 690747..692540 1 NC_011060.1 KEGG: cch:Cag_1704 peptidase S49, protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 692540 6461571 Ppha_0670 Pelodictyon phaeoclathratiforme BU-1 signal peptide peptidase SppA, 36K type YP_002017586.1 690747 D 324925 CDS YP_002017587.1 194335793 6461570 complement(692578..693912) 1 NC_011060.1 KEGG: cph:Cpha266_0557 hypothetical protein; hypothetical protein 693912 6461570 Ppha_0671 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017587.1 692578 R 324925 CDS YP_002017588.1 194335794 6461569 complement(694042..695598) 1 NC_011060.1 KEGG: cch:Cag_1757 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 695598 6461569 Ppha_0672 Pelodictyon phaeoclathratiforme BU-1 Mg chelatase subunit ChlI YP_002017588.1 694042 R 324925 CDS YP_002017589.1 194335795 6461568 695942..697006 1 NC_011060.1 PFAM: acyltransferase 3; KEGG: abo:ABO_0912 acetyltransferase; acyltransferase 3 697006 6461568 Ppha_0673 Pelodictyon phaeoclathratiforme BU-1 acyltransferase 3 YP_002017589.1 695942 D 324925 CDS YP_002017590.1 194335796 6461562 697320..698570 1 NC_011060.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cph:Cpha266_0073 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 698570 6461562 Ppha_0675 Pelodictyon phaeoclathratiforme BU-1 DNA methylase N-4/N-6 domain-containing protein YP_002017590.1 697320 D 324925 CDS YP_002017591.1 194335797 6461561 698866..700170 1 NC_011060.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sfu:Sfum_2797 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 700170 6461561 Ppha_0676 Pelodictyon phaeoclathratiforme BU-1 DNA-cytosine methyltransferase YP_002017591.1 698866 D 324925 CDS YP_002017592.1 194335798 6461560 700238..701167 1 NC_011060.1 SMART: HNH nuclease; KEGG: sfu:Sfum_2799 HNH endonuclease; HNH nuclease 701167 6461560 Ppha_0677 Pelodictyon phaeoclathratiforme BU-1 HNH nuclease YP_002017592.1 700238 D 324925 CDS YP_002017593.1 194335799 6461548 complement(701944..702270) 1 NC_011060.1 KEGG: cbd:COXBU7E912_0654 hypothetical protein; hypothetical protein 702270 6461548 Ppha_0681 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017593.1 701944 R 324925 CDS YP_002017594.1 194335800 6461547 complement(702270..702539) 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cbs:COXBURSA331_A0759 prevent-host-death family protein; prevent-host-death family protein 702539 6461547 Ppha_0682 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002017594.1 702270 R 324925 CDS YP_002017595.1 194335801 6461546 complement(702819..705587) 1 NC_011060.1 PFAM: phosphoenolpyruvate carboxylase; KEGG: cph:Cpha266_0559 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 705587 6461546 Ppha_0683 Pelodictyon phaeoclathratiforme BU-1 phosphoenolpyruvate carboxylase YP_002017595.1 702819 R 324925 CDS YP_002017596.1 194335802 6461545 705839..706480 1 NC_011060.1 KEGG: pvi:Cvib_1418 photosystem P840 reaction center cytochrome c-551; photosystem P840 reaction center cytochrome c-551 706480 6461545 Ppha_0684 Pelodictyon phaeoclathratiforme BU-1 photosystem P840 reaction center cytochrome c-551 YP_002017596.1 705839 D 324925 CDS YP_002017597.1 194335803 6461544 complement(706556..706906) 1 NC_011060.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 706906 6461544 Ppha_0685 Pelodictyon phaeoclathratiforme BU-1 7-cyano-7-deazaguanine reductase YP_002017597.1 706556 R 324925 CDS YP_002017598.1 194335804 6461543 707053..707763 1 NC_011060.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0562 methyltransferase type 12; type 12 methyltransferase 707763 6461543 Ppha_0686 Pelodictyon phaeoclathratiforme BU-1 type 12 methyltransferase YP_002017598.1 707053 D 324925 CDS YP_002017599.1 194335805 6461539 707760..708623 1 NC_011060.1 KEGG: cph:Cpha266_0563 hypothetical protein; hypothetical protein 708623 6461539 Ppha_0687 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017599.1 707760 D 324925 CDS YP_002017600.1 194335806 6461538 708620..709630 1 NC_011060.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cch:Cag_1762 site-specific recombinase, phage/XerD family; integrase family protein 709630 6461538 Ppha_0688 Pelodictyon phaeoclathratiforme BU-1 integrase family protein YP_002017600.1 708620 D 324925 CDS YP_002017601.1 194335807 6461533 709708..710028 1 NC_011060.1 KEGG: cph:Cpha266_0565 hypothetical protein; hypothetical protein 710028 6461533 Ppha_0689 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017601.1 709708 D 324925 CDS YP_002017602.1 194335808 6461532 710120..711115 1 NC_011060.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 711115 6461532 Ppha_0690 Pelodictyon phaeoclathratiforme BU-1 HPr kinase/phosphorylase YP_002017602.1 710120 D 324925 CDS YP_002017603.1 194335809 6461531 711108..712910 1 NC_011060.1 PFAM: extracellular solute-binding protein family 5; KEGG: cph:Cpha266_0567 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 712910 6461531 Ppha_0691 Pelodictyon phaeoclathratiforme BU-1 family 5 extracellular solute-binding protein YP_002017603.1 711108 D 324925 CDS YP_002017604.1 194335810 6461530 712917..713882 1 NC_011060.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plt:Plut_1620 peptide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 713882 6461530 Ppha_0692 Pelodictyon phaeoclathratiforme BU-1 binding-protein-dependent transport system inner membrane protein YP_002017604.1 712917 D 324925 CDS YP_002017605.1 194335811 6461529 713926..714960 1 NC_011060.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 714960 ruvB 6461529 ruvB Pelodictyon phaeoclathratiforme BU-1 Holliday junction DNA helicase RuvB YP_002017605.1 713926 D 324925 CDS YP_002017606.1 194335812 6461526 714941..716674 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0570 hypothetical protein; hypothetical protein 716674 6461526 Ppha_0694 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017606.1 714941 D 324925 CDS YP_002017607.1 194335813 6461521 complement(716796..720332) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0571 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 720332 6461521 Ppha_0695 Pelodictyon phaeoclathratiforme BU-1 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_002017607.1 716796 R 324925 CDS YP_002017608.1 194335814 6461519 720629..721375 1 NC_011060.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cch:Cag_1731 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase 721375 6461519 Ppha_0696 Pelodictyon phaeoclathratiforme BU-1 TrmH family RNA methyltransferase YP_002017608.1 720629 D 324925 CDS YP_002017609.1 194335815 6461518 721495..721878 1 NC_011060.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 721878 6461518 Ppha_0697 Pelodictyon phaeoclathratiforme BU-1 glycine cleavage system protein H YP_002017609.1 721495 D 324925 CDS YP_002017610.1 194335816 6461515 721882..723222 1 NC_011060.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 723222 6461515 Ppha_0698 Pelodictyon phaeoclathratiforme BU-1 glycine dehydrogenase subunit 1 YP_002017610.1 721882 D 324925 CDS YP_002017611.1 194335817 6461512 complement(723302..724192) 1 NC_011060.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 724192 6461512 Ppha_0699 Pelodictyon phaeoclathratiforme BU-1 dihydrodipicolinate synthase YP_002017611.1 723302 R 324925 CDS YP_002017612.1 194335818 6461511 724585..728844 1 NC_011060.1 KEGG: plt:Plut_2011 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 728844 6461511 Ppha_0700 Pelodictyon phaeoclathratiforme BU-1 multi-sensor hybrid histidine kinase YP_002017612.1 724585 D 324925 CDS YP_002017613.1 194335819 6461509 complement(728864..730567) 1 NC_011060.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cph:Cpha266_0576 DNA repair protein RecN; DNA repair protein RecN 730567 6461509 Ppha_0701 Pelodictyon phaeoclathratiforme BU-1 DNA repair protein RecN YP_002017613.1 728864 R 324925 CDS YP_002017614.1 194335820 6461507 complement(730586..730795) 1 NC_011060.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cph:Cpha266_0577 twin-arginine translocation protein, TatA/E family subunit; twin-arginine translocation protein, TatA/E family subunit 730795 6461507 Ppha_0702 Pelodictyon phaeoclathratiforme BU-1 twin-arginine translocation protein, TatA/E family subunit YP_002017614.1 730586 R 324925 CDS YP_002017615.1 194335821 6461504 complement(730914..731552) 1 NC_011060.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 731552 6461504 Ppha_0703 Pelodictyon phaeoclathratiforme BU-1 phosphatidylserine decarboxylase YP_002017615.1 730914 R 324925 CDS YP_002017616.1 194335822 6461501 731675..732661 1 NC_011060.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cch:Cag_1746 MesJ protein; tRNA(Ile)-lysidine synthetase 732661 6461501 Ppha_0704 Pelodictyon phaeoclathratiforme BU-1 tRNA(Ile)-lysidine synthetase YP_002017616.1 731675 D 324925 CDS YP_002017617.1 194335823 6461495 complement(732735..733775) 1 NC_011060.1 KEGG: cph:Cpha266_0580 hypothetical protein; hypothetical protein 733775 6461495 Ppha_0705 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017617.1 732735 R 324925 CDS YP_002017618.1 194335824 6461491 complement(733787..734227) 1 NC_011060.1 PFAM: ribonuclease H; KEGG: cph:Cpha266_0581 ribonuclease H; ribonuclease H 734227 6461491 Ppha_0706 Pelodictyon phaeoclathratiforme BU-1 ribonuclease H YP_002017618.1 733787 R 324925 CDS YP_002017619.1 194335825 6461490 complement(734310..734528) 1 NC_011060.1 required for 70S ribosome assembly; 50S ribosomal protein L28 734528 rpmB 6461490 rpmB Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L28 YP_002017619.1 734310 R 324925 CDS YP_002017620.1 194335826 6461488 complement(734601..735599) 1 NC_011060.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_0583 bacteriochlorophyll/chlorophyll a synthase; bacteriochlorophyll/chlorophyll a synthase 735599 6461488 Ppha_0708 Pelodictyon phaeoclathratiforme BU-1 bacteriochlorophyll/chlorophyll a synthase YP_002017620.1 734601 R 324925 CDS YP_002017621.1 194335827 6461487 complement(735667..736722) 1 NC_011060.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 736722 trpD 6461487 trpD Pelodictyon phaeoclathratiforme BU-1 anthranilate phosphoribosyltransferase YP_002017621.1 735667 R 324925 CDS YP_002017622.1 194335828 6461486 736879..737973 1 NC_011060.1 PFAM: creatinase; peptidase M24; KEGG: cph:Cpha266_0585 peptidase M24; peptidase M24 737973 6461486 Ppha_0710 Pelodictyon phaeoclathratiforme BU-1 peptidase M24 YP_002017622.1 736879 D 324925 CDS YP_002017623.1 194335829 6461485 737927..738166 1 NC_011060.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: cph:Cpha266_0586 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 738166 6461485 Ppha_0711 Pelodictyon phaeoclathratiforme BU-1 CutA1 divalent ion tolerance protein YP_002017623.1 737927 D 324925 CDS YP_002017624.1 194335830 6461476 complement(738312..738998) 1 NC_011060.1 KEGG: dde:Dde_1416 hypothetical protein; hypothetical protein 738998 6461476 Ppha_0712 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017624.1 738312 R 324925 CDS YP_002017625.1 194335831 6461474 complement(join(739029..739592,739592..740023)) 1 NC_011060.1 KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein 740023 6461474 Ppha_0713 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017625.1 739029 R 324925 CDS YP_002017626.1 194335832 6461470 complement(740063..743467) 1 NC_011060.1 PFAM: Hemolysin-type calcium-binding region; Cadherin; KEGG: mmr:Mmar10_1504 cadherin; cadherin 743467 6461470 Ppha_0714 Pelodictyon phaeoclathratiforme BU-1 cadherin YP_002017626.1 740063 R 324925 CDS YP_002017627.1 194335833 6461469 complement(743669..744838) 1 NC_011060.1 KEGG: cph:Cpha266_0587 DNA-directed DNA polymerase; DNA-directed DNA polymerase 744838 6461469 Ppha_0715 Pelodictyon phaeoclathratiforme BU-1 DNA-directed DNA polymerase YP_002017627.1 743669 R 324925 CDS YP_002017628.1 194335834 6461468 complement(744856..745767) 1 NC_011060.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 745767 6461468 Ppha_0716 Pelodictyon phaeoclathratiforme BU-1 branched-chain amino acid aminotransferase YP_002017628.1 744856 R 324925 CDS YP_002017629.1 194335835 6461465 complement(745871..747076) 1 NC_011060.1 PFAM: phosphofructokinase; KEGG: cch:Cag_1780 phosphofructokinase; phosphofructokinase 747076 6461465 Ppha_0717 Pelodictyon phaeoclathratiforme BU-1 phosphofructokinase YP_002017629.1 745871 R 324925 CDS YP_002017630.1 194335836 6461464 747261..748535 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: cch:Cag_1781 lipoprotein releasing system; hypothetical protein 748535 6461464 Ppha_0718 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017630.1 747261 D 324925 CDS YP_002017631.1 194335837 6461463 complement(748532..749005) 1 NC_011060.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 749005 ispF 6461463 ispF Pelodictyon phaeoclathratiforme BU-1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_002017631.1 748532 R 324925 CDS YP_002017632.1 194335838 6461462 749226..750338 1 NC_011060.1 KEGG: cph:Cpha266_0592 hypothetical protein; hypothetical protein 750338 6461462 Ppha_0720 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017632.1 749226 D 324925 CDS YP_002017633.1 194335839 6461461 complement(750335..751258) 1 NC_011060.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: cch:Cag_1783 dihydroorotate dehydrogenase 1; dihydroorotate dehydrogenase family protein 751258 6461461 Ppha_0721 Pelodictyon phaeoclathratiforme BU-1 dihydroorotate dehydrogenase family protein YP_002017633.1 750335 R 324925 CDS YP_002017634.1 194335840 6461459 complement(751349..753469) 1 NC_011060.1 KEGG: pvi:Cvib_1386 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase 753469 6461459 Ppha_0722 Pelodictyon phaeoclathratiforme BU-1 alpha-glucan phosphorylase YP_002017634.1 751349 R 324925 CDS YP_002017635.1 194335841 6461457 753606..754481 1 NC_011060.1 PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein; metallophosphoesterase 754481 6461457 Ppha_0723 Pelodictyon phaeoclathratiforme BU-1 metallophosphoesterase YP_002017635.1 753606 D 324925 CDS YP_002017636.1 194335842 6461456 complement(754518..755003) 1 NC_011060.1 KEGG: plt:Plut_1593 hypothetical protein; hypothetical protein 755003 6461456 Ppha_0724 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017636.1 754518 R 324925 CDS YP_002017637.1 194335843 6461455 complement(755067..756923) 1 NC_011060.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: cph:Cpha266_0599 carbamoyl-phosphate synthase large subunit; Carbamoyl-phosphate synthetase large chain domain-containing protein 756923 6461455 Ppha_0725 Pelodictyon phaeoclathratiforme BU-1 Carbamoyl-phosphate synthetase large chain domain-containing protein YP_002017637.1 755067 R 324925 CDS YP_002017638.1 194335844 6461440 757155..758414 1 NC_011060.1 KEGG: cph:Cpha266_0600 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 758414 6461440 Ppha_0726 Pelodictyon phaeoclathratiforme BU-1 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_002017638.1 757155 D 324925 CDS YP_002017639.1 194335845 6461436 758444..759760 1 NC_011060.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 759760 glyA 6461436 glyA Pelodictyon phaeoclathratiforme BU-1 serine hydroxymethyltransferase YP_002017639.1 758444 D 324925 CDS YP_002017640.1 194335846 6461426 complement(759818..761713) 1 NC_011060.1 KEGG: cph:Cpha266_0602 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase 761713 6461426 Ppha_0728 Pelodictyon phaeoclathratiforme BU-1 DNA primase YP_002017640.1 759818 R 324925 CDS YP_002017641.1 194335847 6461425 762014..762760 1 NC_011060.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 762760 6461425 Ppha_0729 Pelodictyon phaeoclathratiforme BU-1 MotA/TolQ/ExbB proton channel YP_002017641.1 762014 D 324925 CDS YP_002017642.1 194335848 6461423 762767..763300 1 NC_011060.1 KEGG: cph:Cpha266_0604 hypothetical protein; hypothetical protein 763300 6461423 Ppha_0730 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017642.1 762767 D 324925 CDS YP_002017643.1 194335849 6461421 763303..763827 1 NC_011060.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cph:Cpha266_0605 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 763827 6461421 Ppha_0731 Pelodictyon phaeoclathratiforme BU-1 biopolymer transport protein ExbD/TolR YP_002017643.1 763303 D 324925 CDS YP_002017644.1 194335850 6461418 763863..764669 1 NC_011060.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like; TonB family protein 764669 6461418 Ppha_0732 Pelodictyon phaeoclathratiforme BU-1 TonB family protein YP_002017644.1 763863 D 324925 CDS YP_002017645.1 194335851 6461412 complement(764657..764869) 1 NC_011060.1 KEGG: cph:Cpha266_0608 hypothetical protein; hypothetical protein 764869 6461412 Ppha_0733 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017645.1 764657 R 324925 CDS YP_002017646.1 194335852 6461410 complement(764883..766100) 1 NC_011060.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase 766100 6461410 Ppha_0734 Pelodictyon phaeoclathratiforme BU-1 acetylornithine aminotransferase YP_002017646.1 764883 R 324925 CDS YP_002017647.1 194335853 6461409 766553..770158 1 NC_011060.1 PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; hypothetical protein 770158 6461409 Ppha_0735 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017647.1 766553 D 324925 CDS YP_002017648.1 194335854 6461407 complement(770261..770485) 1 NC_011060.1 KEGG: cph:Cpha266_0610 hypothetical protein; hypothetical protein 770485 6461407 Ppha_0736 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017648.1 770261 R 324925 CDS YP_002017649.1 194335855 6461405 complement(770485..771789) 1 NC_011060.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_0611 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 771789 6461405 Ppha_0737 Pelodictyon phaeoclathratiforme BU-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002017649.1 770485 R 324925 CDS YP_002017650.1 194335856 6461404 complement(771965..772465) 1 NC_011060.1 PFAM: protein of unknown function DUF985; KEGG: cch:Cag_0287 hypothetical protein; hypothetical protein 772465 6461404 Ppha_0738 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017650.1 771965 R 324925 CDS YP_002017651.1 194335857 6461401 complement(772452..772979) 1 NC_011060.1 KEGG: pvi:Cvib_1371 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 772979 6461401 Ppha_0739 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_002017651.1 772452 R 324925 CDS YP_002017652.1 194335858 6461394 773245..774663 1 NC_011060.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 774663 6461394 Ppha_0740 Pelodictyon phaeoclathratiforme BU-1 coproporphyrinogen III oxidase YP_002017652.1 773245 D 324925 CDS YP_002017653.1 194335859 6461393 774978..776231 1 NC_011060.1 KEGG: bxe:Bxe_B0298 phage resistance protein; phage resistance protein 776231 6461393 Ppha_0741 Pelodictyon phaeoclathratiforme BU-1 phage resistance protein YP_002017653.1 774978 D 324925 CDS YP_002017654.1 194335860 6461389 776460..779459 1 NC_011060.1 KEGG: mfa:Mfla_1215 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; HsdR family type I site-specific deoxyribonuclease 779459 6461389 Ppha_0743 Pelodictyon phaeoclathratiforme BU-1 HsdR family type I site-specific deoxyribonuclease YP_002017654.1 776460 D 324925 CDS YP_002017655.1 194335861 6461387 779449..779706 1 NC_011060.1 KEGG: sbl:Sbal_3718 protein of unknown function DUF1016; hypothetical protein 779706 6461387 Ppha_0744 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017655.1 779449 D 324925 CDS YP_002017656.1 194335862 6461386 779703..780938 1 NC_011060.1 PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_3549 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain 780938 6461386 Ppha_0745 Pelodictyon phaeoclathratiforme BU-1 restriction modification system DNA specificity domain YP_002017656.1 779703 D 324925 CDS YP_002017657.1 194335863 6461383 780938..781456 1 NC_011060.1 KEGG: dac:Daci_2437 hypothetical protein; hypothetical protein 781456 6461383 Ppha_0746 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017657.1 780938 D 324925 CDS YP_002017658.1 194335864 6461381 781453..781653 1 NC_011060.1 KEGG: dac:Daci_2436 hypothetical protein; hypothetical protein 781653 6461381 Ppha_0747 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017658.1 781453 D 324925 CDS YP_002017659.1 194335865 6461380 781749..781979 1 NC_011060.1 KEGG: cch:Cag_1388 hypothetical protein; hypothetical protein 781979 6461380 Ppha_0748 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017659.1 781749 D 324925 CDS YP_002017660.1 194335866 6461379 782165..783031 1 NC_011060.1 KEGG: cch:Cag_1091 hypothetical protein; hypothetical protein 783031 6461379 Ppha_0749 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017660.1 782165 D 324925 CDS YP_002017661.1 194335867 6461377 783099..784733 1 NC_011060.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_3546 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit 784733 6461377 Ppha_0750 Pelodictyon phaeoclathratiforme BU-1 type I restriction-modification system, M subunit YP_002017661.1 783099 D 324925 CDS YP_002017662.1 194335868 6461375 785199..785333 1 NC_011060.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: dol:Dole_2718 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 785333 6461375 Ppha_0751 Pelodictyon phaeoclathratiforme BU-1 Sel1 domain-containing protein repeat-containing protein YP_002017662.1 785199 D 324925 CDS YP_002017663.1 194335869 6461374 785466..786293 1 NC_011060.1 hypothetical protein 786293 6461374 Ppha_0752 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017663.1 785466 D 324925 CDS YP_002017664.1 194335870 6461364 787269..787511 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; KEGG: lic:LIC12712 hypothetical protein; prevent-host-death family protein 787511 6461364 Ppha_0754 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002017664.1 787269 D 324925 CDS YP_002017665.1 194335871 6461362 complement(788109..788312) 1 NC_011060.1 KEGG: swo:Swol_2490 hypothetical protein; hypothetical protein 788312 6461362 Ppha_0756 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017665.1 788109 R 324925 CDS YP_002017666.1 194335872 6461358 complement(788309..788749) 1 NC_011060.1 KEGG: ajs:Ajs_3020 hypothetical protein; hypothetical protein 788749 6461358 Ppha_0757 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017666.1 788309 R 324925 CDS YP_002017667.1 194335873 6461357 789166..789855 1 NC_011060.1 PFAM: regulatory protein TetR; KEGG: rrs:RoseRS_0017 transcriptional regulator, TetR family; TetR family transcriptional regulator 789855 6461357 Ppha_0758 Pelodictyon phaeoclathratiforme BU-1 TetR family transcriptional regulator YP_002017667.1 789166 D 324925 CDS YP_002017668.1 194335874 6461352 789858..791168 1 NC_011060.1 KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 791168 6461352 Ppha_0759 Pelodictyon phaeoclathratiforme BU-1 NADPH-dependent FMN reductase YP_002017668.1 789858 D 324925 CDS YP_002017669.1 194335875 6461351 791171..792880 1 NC_011060.1 PFAM: protein of unknown function DUF1703; KEGG: cch:Cag_0755 hypothetical protein; hypothetical protein 792880 6461351 Ppha_0760 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017669.1 791171 D 324925 CDS YP_002017670.1 194335876 6461348 complement(792943..794832) 1 NC_011060.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; KEGG: rpe:RPE_3830 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein 794832 6461348 Ppha_0761 Pelodictyon phaeoclathratiforme BU-1 outer membrane autotransporter barrel domain-containing protein YP_002017670.1 792943 R 324925 CDS YP_002017671.1 194335877 6461344 795333..796469 1 NC_011060.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cph:Cpha266_0615 oxidoreductase domain protein; oxidoreductase domain-containing protein 796469 6461344 Ppha_0762 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase domain-containing protein YP_002017671.1 795333 D 324925 CDS YP_002017672.1 194335878 6461343 796475..796807 1 NC_011060.1 PFAM: small multidrug resistance protein; KEGG: cch:Cag_0283 SugE protein; small multidrug resistance protein 796807 6461343 Ppha_0763 Pelodictyon phaeoclathratiforme BU-1 small multidrug resistance protein YP_002017672.1 796475 D 324925 CDS YP_002017673.1 194335879 6461340 complement(796815..798773) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0618 ABC transporter related; ABC transporter-like protein 798773 6461340 Ppha_0764 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017673.1 796815 R 324925 CDS YP_002017674.1 194335880 6461339 799148..799270 1 NC_011060.1 hypothetical protein 799270 6461339 Ppha_0765 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017674.1 799148 D 324925 CDS YP_002017675.1 194335881 6461338 799322..800089 1 NC_011060.1 KEGG: cph:Cpha266_1359 hypothetical protein; hypothetical protein 800089 6461338 Ppha_0766 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017675.1 799322 D 324925 CDS YP_002017676.1 194335882 6461336 800161..800328 1 NC_011060.1 hypothetical protein 800328 6461336 Ppha_0767 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017676.1 800161 D 324925 CDS YP_002017677.1 194335883 6461335 800561..801832 1 NC_011060.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0620 outer membrane efflux protein; outer membrane efflux protein 801832 6461335 Ppha_0768 Pelodictyon phaeoclathratiforme BU-1 outer membrane efflux protein YP_002017677.1 800561 D 324925 CDS YP_002017678.1 194335884 6461332 801825..802793 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0621 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 802793 6461332 Ppha_0769 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002017678.1 801825 D 324925 CDS YP_002017679.1 194335885 6461331 802790..804760 1 NC_011060.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cph:Cpha266_0622 ABC transporter related; ABC transporter-like protein 804760 6461331 Ppha_0770 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017679.1 802790 D 324925 CDS YP_002017680.1 194335886 6461330 805111..805590 1 NC_011060.1 KEGG: cph:Cpha266_1944 Legionella vir region protein; vir region protein-like protein 805590 6461330 Ppha_0771 Pelodictyon phaeoclathratiforme BU-1 vir region protein-like protein YP_002017680.1 805111 D 324925 CDS YP_002017681.1 194335887 6461329 805748..806680 1 NC_011060.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12; type 12 methyltransferase 806680 6461329 Ppha_0772 Pelodictyon phaeoclathratiforme BU-1 type 12 methyltransferase YP_002017681.1 805748 D 324925 CDS YP_002017682.1 194335888 6461326 complement(806675..808099) 1 NC_011060.1 KEGG: sfu:Sfum_1855 amidohydrolase 2; hypothetical protein 808099 6461326 Ppha_0773 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017682.1 806675 R 324925 CDS YP_002017683.1 194335889 6461325 808392..808811 1 NC_011060.1 PFAM: heat shock protein Hsp20; KEGG: pvi:Cvib_0315 heat shock protein HSP20; heat shock protein Hsp20 808811 6461325 Ppha_0774 Pelodictyon phaeoclathratiforme BU-1 heat shock protein Hsp20 YP_002017683.1 808392 D 324925 CDS YP_002017684.1 194335890 6461324 808842..809042 1 NC_011060.1 KEGG: cph:Cpha266_0991 hypothetical protein; hypothetical protein 809042 6461324 Ppha_0775 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017684.1 808842 D 324925 CDS YP_002017685.1 194335891 6461323 complement(809142..810320) 1 NC_011060.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 810320 sucC 6461323 sucC Pelodictyon phaeoclathratiforme BU-1 succinyl-CoA synthetase subunit beta YP_002017685.1 809142 R 324925 CDS YP_002017686.1 194335892 6461322 810463..810930 1 NC_011060.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pvi:Cvib_0554 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase 810930 6461322 Ppha_0777 Pelodictyon phaeoclathratiforme BU-1 zinc-binding CMP/dCMP deaminase YP_002017686.1 810463 D 324925 CDS YP_002017687.1 194335893 6461320 complement(810963..811964) 1 NC_011060.1 KEGG: pvi:Cvib_0555 hypothetical protein; hypothetical protein 811964 6461320 Ppha_0778 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017687.1 810963 R 324925 CDS YP_002017688.1 194335894 6461318 complement(811979..813235) 1 NC_011060.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pvi:Cvib_0556 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 813235 6461318 Ppha_0779 Pelodictyon phaeoclathratiforme BU-1 2-nitropropane dioxygenase YP_002017688.1 811979 R 324925 CDS YP_002017689.1 194335895 6461315 813543..814292 1 NC_011060.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 814292 gpmA 6461315 gpmA Pelodictyon phaeoclathratiforme BU-1 phosphoglyceromutase YP_002017689.1 813543 D 324925 CDS YP_002017690.1 194335896 6461313 814402..819003 1 NC_011060.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: plt:Plut_0502 glutamate synthase (ferredoxin); Glutamate synthase (ferredoxin) 819003 6461313 Ppha_0781 Pelodictyon phaeoclathratiforme BU-1 Glutamate synthase (ferredoxin) YP_002017690.1 814402 D 324925 CDS YP_002017691.1 194335897 6461310 819054..820529 1 NC_011060.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 820529 gltD 6461310 gltD Pelodictyon phaeoclathratiforme BU-1 glutamate synthase subunit beta YP_002017691.1 819054 D 324925 CDS YP_002017692.1 194335898 6461306 820553..820822 1 NC_011060.1 KEGG: plt:Plut_0504 hypothetical protein; hypothetical protein 820822 6461306 Ppha_0783 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017692.1 820553 D 324925 CDS YP_002017693.1 194335899 6461305 820865..822181 1 NC_011060.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 822181 clpX 6461305 clpX Pelodictyon phaeoclathratiforme BU-1 ATP-dependent protease ATP-binding subunit ClpX YP_002017693.1 820865 D 324925 CDS YP_002017694.1 194335900 6461300 complement(822661..823449) 1 NC_011060.1 PFAM: metallophosphoesterase; KEGG: plt:Plut_0506 Ser/Thr protein phosphatase family protein; metallophosphoesterase 823449 6461300 Ppha_0785 Pelodictyon phaeoclathratiforme BU-1 metallophosphoesterase YP_002017694.1 822661 R 324925 CDS YP_002017695.1 194335901 6461297 823712..824323 1 NC_011060.1 KEGG: plt:Plut_0507 hypothetical protein; hypothetical protein 824323 6461297 Ppha_0786 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017695.1 823712 D 324925 CDS YP_002017696.1 194335902 6461296 824320..825258 1 NC_011060.1 PFAM: Domain of unknown function DUF1814; KEGG: plt:Plut_0508 hypothetical protein; hypothetical protein 825258 6461296 Ppha_0787 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017696.1 824320 D 324925 CDS YP_002017697.1 194335903 6461293 complement(825804..826283) 1 NC_011060.1 KEGG: cph:Cpha266_0655 hypothetical protein; hypothetical protein 826283 6461293 Ppha_0788 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017697.1 825804 R 324925 CDS YP_002017698.1 194335904 6461289 826624..829011 1 NC_011060.1 PFAM: DNA primase small subunit; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like; type III restriction protein res subunit 829011 6461289 Ppha_0789 Pelodictyon phaeoclathratiforme BU-1 type III restriction protein res subunit YP_002017698.1 826624 D 324925 CDS YP_002017699.1 194335905 6461286 829304..829657 1 NC_011060.1 PFAM: protein of unknown function DUF891; KEGG: cph:Cpha266_0649 protein of unknown function DUF891; hypothetical protein 829657 6461286 Ppha_0790 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017699.1 829304 D 324925 CDS YP_002017700.1 194335906 6461285 829650..829925 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0650 transcriptional regulator, XRE family; XRE family transcriptional regulator 829925 6461285 Ppha_0791 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017700.1 829650 D 324925 CDS YP_002017701.1 194335907 6461282 830563..831216 1 NC_011060.1 KEGG: mmw:Mmwyl1_0848 hypothetical protein; hypothetical protein 831216 6461282 Ppha_0792 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017701.1 830563 D 324925 CDS YP_002017702.1 194335908 6461277 831880..833706 1 NC_011060.1 KEGG: gbe:GbCGDNIH1_1764 general secretion pathway protein N; hypothetical protein 833706 6461277 Ppha_0795 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017702.1 831880 D 324925 CDS YP_002017703.1 194335909 6461276 834150..834605 1 NC_011060.1 hypothetical protein 834605 6461276 Ppha_0796 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017703.1 834150 D 324925 CDS YP_002017704.1 194335910 6461274 834663..835916 1 NC_011060.1 hypothetical protein 835916 6461274 Ppha_0797 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017704.1 834663 D 324925 CDS YP_002017705.1 194335911 6461270 836388..836633 1 NC_011060.1 PFAM: Flp/Fap pilin component; KEGG: pvi:Cvib_0571 Flp/Fap pilin component; Flp/Fap pilin component 836633 6461270 Ppha_0798 Pelodictyon phaeoclathratiforme BU-1 Flp/Fap pilin component YP_002017705.1 836388 D 324925 CDS YP_002017706.1 194335912 6461269 836656..837447 1 NC_011060.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pvi:Cvib_0570 SAF domain; Flp pilus assembly protein CpaB 837447 6461269 Ppha_0799 Pelodictyon phaeoclathratiforme BU-1 Flp pilus assembly protein CpaB YP_002017706.1 836656 D 324925 CDS YP_002017707.1 194335913 6461267 837453..838985 1 NC_011060.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: pvi:Cvib_0569 type II and III secretion system protein; type II and III secretion system protein 838985 6461267 Ppha_0800 Pelodictyon phaeoclathratiforme BU-1 type II and III secretion system protein YP_002017707.1 837453 D 324925 CDS YP_002017708.1 194335914 6461265 838982..839407 1 NC_011060.1 PFAM: TadE family protein; KEGG: pvi:Cvib_0568 TadE family protein; TadE family protein 839407 6461265 Ppha_0801 Pelodictyon phaeoclathratiforme BU-1 TadE family protein YP_002017708.1 838982 D 324925 CDS YP_002017709.1 194335915 6461262 839404..839931 1 NC_011060.1 KEGG: pvi:Cvib_0567 hypothetical protein; hypothetical protein 839931 6461262 Ppha_0802 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017709.1 839404 D 324925 CDS YP_002017710.1 194335916 6461261 839938..841083 1 NC_011060.1 KEGG: plt:Plut_0656 Flp pilus assembly protein ATPase CpaE-like; Flp pilus assembly protein ATPase CpaE-like protein 841083 6461261 Ppha_0803 Pelodictyon phaeoclathratiforme BU-1 Flp pilus assembly protein ATPase CpaE-like protein YP_002017710.1 839938 D 324925 CDS YP_002017711.1 194335917 6461260 841059..842480 1 NC_011060.1 PFAM: type II secretion system protein E; KEGG: pvi:Cvib_0565 type II secretion system protein E; type II secretion system protein E 842480 6461260 Ppha_0804 Pelodictyon phaeoclathratiforme BU-1 type II secretion system protein E YP_002017711.1 841059 D 324925 CDS YP_002017712.1 194335918 6461259 842495..843493 1 NC_011060.1 PFAM: type II secretion system protein; KEGG: pvi:Cvib_0564 type II secretion system protein; type II secretion system protein 843493 6461259 Ppha_0805 Pelodictyon phaeoclathratiforme BU-1 type II secretion system protein YP_002017712.1 842495 D 324925 CDS YP_002017713.1 194335919 6461258 843513..844463 1 NC_011060.1 PFAM: type II secretion system protein; KEGG: plt:Plut_0793 TadC protein; type II secretion system protein 844463 6461258 Ppha_0806 Pelodictyon phaeoclathratiforme BU-1 type II secretion system protein YP_002017713.1 843513 D 324925 CDS YP_002017714.1 194335920 6461256 844460..845338 1 NC_011060.1 PFAM: peptidase A24A prepilin type IV; KEGG: pvi:Cvib_0562 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 845338 6461256 Ppha_0807 Pelodictyon phaeoclathratiforme BU-1 peptidase A24A prepilin type IV YP_002017714.1 844460 D 324925 CDS YP_002017715.1 194335921 6461255 845480..846559 1 NC_011060.1 PFAM: radical SAM protein; KEGG: cte:CT1749 MoaA/NifB/PqqE family protein; radical SAM protein 846559 6461255 Ppha_0808 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017715.1 845480 D 324925 CDS YP_002017716.1 194335922 6461253 846588..847382 1 NC_011060.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1748 methlytransferase, UbiE/COQ5 family; type 11 methyltransferase 847382 6461253 Ppha_0809 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002017716.1 846588 D 324925 CDS YP_002017717.1 194335923 6461250 847741..849033 1 NC_011060.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0468 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; Flavocytochrome c sulfide dehydrogenase 849033 6461250 Ppha_0810 Pelodictyon phaeoclathratiforme BU-1 Flavocytochrome c sulfide dehydrogenase YP_002017717.1 847741 D 324925 CDS YP_002017718.1 194335924 6461245 849251..849598 1 NC_011060.1 KEGG: cch:Cag_1922 sulfur oxidation protein SoxX; sulfur oxidation protein SoxX 849598 6461245 Ppha_0811 Pelodictyon phaeoclathratiforme BU-1 sulfur oxidation protein SoxX YP_002017718.1 849251 D 324925 CDS YP_002017719.1 194335925 6461243 849702..850163 1 NC_011060.1 KEGG: cch:Cag_1923 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 850163 6461243 Ppha_0812 Pelodictyon phaeoclathratiforme BU-1 twin-arginine translocation pathway signal YP_002017719.1 849702 D 324925 CDS YP_002017720.1 194335926 6461242 850204..850509 1 NC_011060.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: cch:Cag_1924 sulfur oxidation protein SoxZ; sulfur oxidation protein SoxZ 850509 6461242 Ppha_0813 Pelodictyon phaeoclathratiforme BU-1 sulfur oxidation protein SoxZ YP_002017720.1 850204 D 324925 CDS YP_002017721.1 194335927 6461236 850535..851392 1 NC_011060.1 KEGG: cch:Cag_1925 sulfur oxidation protein SoxA; sulfur oxidation protein SoxA 851392 6461236 Ppha_0814 Pelodictyon phaeoclathratiforme BU-1 sulfur oxidation protein SoxA YP_002017721.1 850535 D 324925 CDS YP_002017722.1 194335928 6461232 851403..851711 1 NC_011060.1 KEGG: cch:Cag_1926 hypothetical protein; hypothetical protein 851711 6461232 Ppha_0815 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017722.1 851403 D 324925 CDS YP_002017723.1 194335929 6461231 851811..853571 1 NC_011060.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cch:Cag_1927 twin-arginine translocation pathway signal; 5'-nucleotidase 853571 6461231 Ppha_0816 Pelodictyon phaeoclathratiforme BU-1 5'-nucleotidase YP_002017723.1 851811 D 324925 CDS YP_002017724.1 194335930 6461230 853629..854177 1 NC_011060.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_1928 thiol:disulfide interchange protein, thioredoxin family; redoxin domain-containing protein 854177 6461230 Ppha_0817 Pelodictyon phaeoclathratiforme BU-1 redoxin domain-containing protein YP_002017724.1 853629 D 324925 CDS YP_002017725.1 194335931 6461228 854352..854852 1 NC_011060.1 PFAM: Rubrerythrin; KEGG: cte:CT1327 rubrerythrin; rubrerythrin 854852 6461228 Ppha_0818 Pelodictyon phaeoclathratiforme BU-1 rubrerythrin YP_002017725.1 854352 D 324925 CDS YP_002017726.1 194335932 6461219 855457..855789 1 NC_011060.1 KEGG: cph:Cpha266_2642 hypothetical protein; hypothetical protein 855789 6461219 Ppha_0820 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017726.1 855457 D 324925 CDS YP_002017727.1 194335933 6461217 complement(855805..857529) 1 NC_011060.1 KEGG: cph:Cpha266_0697 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydC 857529 6461217 Ppha_0821 Pelodictyon phaeoclathratiforme BU-1 cysteine ABC transporter permease/ATP-binding protein CydC YP_002017727.1 855805 R 324925 CDS YP_002017728.1 194335934 6461216 complement(857526..859265) 1 NC_011060.1 KEGG: cph:Cpha266_0698 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydD 859265 6461216 Ppha_0822 Pelodictyon phaeoclathratiforme BU-1 cysteine ABC transporter permease/ATP-binding protein CydD YP_002017728.1 857526 R 324925 CDS YP_002017729.1 194335935 6461210 complement(859558..860532) 1 NC_011060.1 hypothetical protein 860532 6461210 Ppha_0823 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017729.1 859558 R 324925 CDS YP_002017730.1 194335936 6461205 complement(860526..861530) 1 NC_011060.1 hypothetical protein 861530 6461205 Ppha_0824 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017730.1 860526 R 324925 CDS YP_002017731.1 194335937 6461204 complement(861777..862193) 1 NC_011060.1 hypothetical protein 862193 6461204 Ppha_0825 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017731.1 861777 R 324925 CDS YP_002017732.1 194335938 6461199 complement(862190..862438) 1 NC_011060.1 KEGG: cph:Cpha266_2641 hypothetical protein; hypothetical protein 862438 6461199 Ppha_0826 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017732.1 862190 R 324925 CDS YP_002017733.1 194335939 6461196 complement(862663..863862) 1 NC_011060.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 863862 6461196 Ppha_0827 Pelodictyon phaeoclathratiforme BU-1 tryptophan synthase subunit beta YP_002017733.1 862663 R 324925 CDS YP_002017734.1 194335940 6461191 864016..866604 1 NC_011060.1 KEGG: cph:Cpha266_1942 hypothetical protein; hypothetical protein 866604 6461191 Ppha_0828 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017734.1 864016 D 324925 CDS YP_002017735.1 194335941 6461189 complement(866634..867506) 1 NC_011060.1 PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1299 dihydrolipoamide acetyltransferase; alpha/beta hydrolase fold protein 867506 6461189 Ppha_0829 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002017735.1 866634 R 324925 CDS YP_002017736.1 194335942 6461188 867641..868054 1 NC_011060.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_0538 hypothetical protein; BadM/Rrf2 family transcriptional regulator 868054 6461188 Ppha_0830 Pelodictyon phaeoclathratiforme BU-1 BadM/Rrf2 family transcriptional regulator YP_002017736.1 867641 D 324925 CDS YP_002017737.1 194335943 6461186 868177..871023 1 NC_011060.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: plt:Plut_0539 excinuclease ABC, A subunit; excinuclease ABC subunit A 871023 6461186 Ppha_0831 Pelodictyon phaeoclathratiforme BU-1 excinuclease ABC subunit A YP_002017737.1 868177 D 324925 CDS YP_002017738.1 194335944 6461185 complement(871043..871327) 1 NC_011060.1 KEGG: pvi:Cvib_0584 hypothetical protein; hypothetical protein 871327 6461185 Ppha_0832 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017738.1 871043 R 324925 CDS YP_002017739.1 194335945 6461184 871512..871799 1 NC_011060.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 871799 groES 6461184 groES Pelodictyon phaeoclathratiforme BU-1 co-chaperonin GroES YP_002017739.1 871512 D 324925 CDS YP_002017740.1 194335946 6461183 871847..873490 1 NC_011060.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 873490 groEL 6461183 groEL Pelodictyon phaeoclathratiforme BU-1 chaperonin GroEL YP_002017740.1 871847 D 324925 CDS YP_002017741.1 194335947 6461182 873698..873886 1 NC_011060.1 KEGG: cch:Cag_0574 hypothetical protein; hypothetical protein 873886 6461182 Ppha_0835 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017741.1 873698 D 324925 CDS YP_002017742.1 194335948 6461180 873871..874185 1 NC_011060.1 PFAM: plasmid stabilization system; KEGG: cch:Cag_0575 hypothetical protein; plasmid stabilization system 874185 6461180 Ppha_0836 Pelodictyon phaeoclathratiforme BU-1 plasmid stabilization system YP_002017742.1 873871 D 324925 CDS YP_002017743.1 194335949 6461179 complement(874369..874473) 1 NC_011060.1 hypothetical protein 874473 6461179 Ppha_0837 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017743.1 874369 R 324925 CDS YP_002017744.1 194335950 6461178 874740..875516 1 NC_011060.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cph:Cpha266_1935 ExsB protein; exsB protein 875516 6461178 Ppha_0838 Pelodictyon phaeoclathratiforme BU-1 exsB protein YP_002017744.1 874740 D 324925 CDS YP_002017745.1 194335951 6461176 875513..876190 1 NC_011060.1 PFAM: Abortive infection protein; KEGG: cph:Cpha266_1934 abortive infection protein; abortive infection protein 876190 6461176 Ppha_0839 Pelodictyon phaeoclathratiforme BU-1 abortive infection protein YP_002017745.1 875513 D 324925 CDS YP_002017746.1 194335952 6461169 876222..877025 1 NC_011060.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 877025 trpA 6461169 trpA Pelodictyon phaeoclathratiforme BU-1 tryptophan synthase subunit alpha YP_002017746.1 876222 D 324925 CDS YP_002017747.1 194335953 6461168 877029..878042 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1932 glycosyl transferase, family 2; family 2 glycosyl transferase 878042 6461168 Ppha_0841 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017747.1 877029 D 324925 CDS YP_002017748.1 194335954 6461167 complement(878022..878678) 1 NC_011060.1 PFAM: cyclase/dehydrase; KEGG: cte:CT1061 hypothetical protein; cyclase/dehydrase 878678 6461167 Ppha_0842 Pelodictyon phaeoclathratiforme BU-1 cyclase/dehydrase YP_002017748.1 878022 R 324925 CDS YP_002017749.1 194335955 6461165 complement(878758..879801) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: cph:Cpha266_1931 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 879801 6461165 Ppha_0843 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002017749.1 878758 R 324925 CDS YP_002017750.1 194335956 6461164 880160..880678 1 NC_011060.1 KEGG: mfa:Mfla_1836 hypothetical protein; hypothetical protein 880678 6461164 Ppha_0844 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017750.1 880160 D 324925 CDS YP_002017751.1 194335957 6461160 complement(880914..882293) 1 NC_011060.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cph:Cpha266_0745 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 882293 6461160 Ppha_0846 Pelodictyon phaeoclathratiforme BU-1 cation diffusion facilitator family transporter YP_002017751.1 880914 R 324925 CDS YP_002017752.1 194335958 6461158 882672..883817 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0799 glycosyl transferase, group 1; group 1 glycosyl transferase 883817 6461158 Ppha_0847 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017752.1 882672 D 324925 CDS YP_002017753.1 194335959 6461154 complement(883839..884894) 1 NC_011060.1 KEGG: cch:Cag_1290 cell shape determining protein MreB/Mrl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein; rod shape-determining protein MreB 884894 6461154 Ppha_0848 Pelodictyon phaeoclathratiforme BU-1 rod shape-determining protein MreB YP_002017753.1 883839 R 324925 CDS YP_002017754.1 194335960 6461152 885121..886407 1 NC_011060.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 886407 hisD 6461152 hisD Pelodictyon phaeoclathratiforme BU-1 histidinol dehydrogenase YP_002017754.1 885121 D 324925 CDS YP_002017755.1 194335961 6461151 886404..887429 1 NC_011060.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pvi:Cvib_0597 queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 887429 6461151 Ppha_0850 Pelodictyon phaeoclathratiforme BU-1 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_002017755.1 886404 D 324925 CDS YP_002017756.1 194335962 6461147 887674..890244 1 NC_011060.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 890244 6461147 Ppha_0851 Pelodictyon phaeoclathratiforme BU-1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002017756.1 887674 D 324925 CDS YP_002017757.1 194335963 6461146 complement(890399..890587) 1 NC_011060.1 KEGG: rno:685126 hypothetical protein LOC685126; hypothetical protein 890587 6461146 Ppha_0852 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017757.1 890399 R 324925 CDS YP_002017758.1 194335964 6461144 complement(890984..891877) 1 NC_011060.1 PFAM: Auxin Efflux Carrier; KEGG: cph:Cpha266_0806 auxin efflux carrier; auxin efflux carrier family protein 891877 6461144 Ppha_0853 Pelodictyon phaeoclathratiforme BU-1 auxin efflux carrier family protein YP_002017758.1 890984 R 324925 CDS YP_002017759.1 194335965 6461135 complement(892259..893533) 1 NC_011060.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 893533 6461135 Ppha_0854 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002017759.1 892259 R 324925 CDS YP_002017760.1 194335966 6461127 893734..895245 1 NC_011060.1 PFAM: Peptidase M23; KEGG: cch:Cag_1281 membrane-bound metallopeptidase-like; peptidase M23 895245 6461127 Ppha_0855 Pelodictyon phaeoclathratiforme BU-1 peptidase M23 YP_002017760.1 893734 D 324925 CDS YP_002017761.1 194335967 6461126 895254..895808 1 NC_011060.1 KEGG: plt:Plut_0563 hypothetical protein; hypothetical protein 895808 6461126 Ppha_0856 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017761.1 895254 D 324925 CDS YP_002017762.1 194335968 6461125 895819..896652 1 NC_011060.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 896652 6461125 Ppha_0857 Pelodictyon phaeoclathratiforme BU-1 NAD synthetase YP_002017762.1 895819 D 324925 CDS YP_002017763.1 194335969 6461120 complement(896757..898352) 1 NC_011060.1 KEGG: plt:Plut_0565 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase 898352 6461120 Ppha_0858 Pelodictyon phaeoclathratiforme BU-1 L-aspartate oxidase YP_002017763.1 896757 R 324925 CDS YP_002017764.1 194335970 6461114 complement(898452..899072) 1 NC_011060.1 PFAM: hypothetical protein; KEGG: cph:Cpha266_0812 DedA family protein; hypothetical protein 899072 6461114 Ppha_0859 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017764.1 898452 R 324925 CDS YP_002017765.1 194335971 6461113 complement(899251..899796) 1 NC_011060.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase 899796 6461113 Ppha_0860 Pelodictyon phaeoclathratiforme BU-1 pyruvoyl-dependent arginine decarboxylase YP_002017765.1 899251 R 324925 CDS YP_002017766.1 194335972 6461112 complement(899879..901096) 1 NC_011060.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 901096 6461112 Ppha_0861 Pelodictyon phaeoclathratiforme BU-1 tyrosyl-tRNA synthetase YP_002017766.1 899879 R 324925 CDS YP_002017767.1 194335973 6461110 complement(901123..901596) 1 NC_011060.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 901596 smpB 6461110 smpB Pelodictyon phaeoclathratiforme BU-1 SsrA-binding protein YP_002017767.1 901123 R 324925 CDS YP_002017768.1 194335974 6461109 complement(901605..903092) 1 NC_011060.1 PFAM: FAD linked oxidase domain protein; KEGG: pvi:Cvib_1206 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase 903092 6461109 Ppha_0863 Pelodictyon phaeoclathratiforme BU-1 D-lactate dehydrogenase YP_002017768.1 901605 R 324925 CDS YP_002017769.1 194335975 6461108 complement(903089..905014) 1 NC_011060.1 KEGG: cph:Cpha266_0817 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 905014 6461108 Ppha_0864 Pelodictyon phaeoclathratiforme BU-1 penicillin-binding protein 2 YP_002017769.1 903089 R 324925 CDS YP_002017770.1 194335976 6461107 complement(905018..905509) 1 NC_011060.1 KEGG: plt:Plut_0572 hypothetical protein; hypothetical protein 905509 6461107 Ppha_0865 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017770.1 905018 R 324925 CDS YP_002017771.1 194335977 6461103 complement(905528..906370) 1 NC_011060.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 906370 6461103 Ppha_0866 Pelodictyon phaeoclathratiforme BU-1 rod shape-determining protein MreC YP_002017771.1 905528 R 324925 CDS YP_002017772.1 194335978 6461102 906451..906840 1 NC_011060.1 PFAM: chaperonin Cpn10; KEGG: cch:Cag_1167 chaperonin, 10 kDa; chaperonin Cpn10 906840 6461102 Ppha_0867 Pelodictyon phaeoclathratiforme BU-1 chaperonin Cpn10 YP_002017772.1 906451 D 324925 CDS YP_002017773.1 194335979 6461100 906887..907861 1 NC_011060.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 907861 6461100 Ppha_0868 Pelodictyon phaeoclathratiforme BU-1 quinolinate synthetase YP_002017773.1 906887 D 324925 CDS YP_002017774.1 194335980 6461099 907957..908670 1 NC_011060.1 KEGG: cph:Cpha266_0822 hypothetical protein; hypothetical protein 908670 6461099 Ppha_0869 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017774.1 907957 D 324925 CDS YP_002017775.1 194335981 6461091 908702..909790 1 NC_011060.1 PFAM: pentapeptide repeat protein; KEGG: cte:CT0572 pentapeptide repeat family protein; pentapeptide repeat-containing protein 909790 6461091 Ppha_0870 Pelodictyon phaeoclathratiforme BU-1 pentapeptide repeat-containing protein YP_002017775.1 908702 D 324925 CDS YP_002017776.1 194335982 6461090 909798..910793 1 NC_011060.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bcz:BCZK2940 3-oxoacyl-(acyl carrier protein) synthase III; Beta-ketoacyl-acyl-carrier-protein synthase I 910793 6461090 Ppha_0871 Pelodictyon phaeoclathratiforme BU-1 Beta-ketoacyl-acyl-carrier-protein synthase I YP_002017776.1 909798 D 324925 CDS YP_002017777.1 194335983 6461088 910989..912746 1 NC_011060.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; histidine kinase 912746 6461088 Ppha_0872 Pelodictyon phaeoclathratiforme BU-1 histidine kinase YP_002017777.1 910989 D 324925 CDS YP_002017778.1 194335984 6461087 912821..913087 1 NC_011060.1 PFAM: Tail Collar domain protein; KEGG: ana:alr4706 unknown protein; Tail Collar domain-containing protein 913087 6461087 Ppha_0873 Pelodictyon phaeoclathratiforme BU-1 Tail Collar domain-containing protein YP_002017778.1 912821 D 324925 CDS YP_002017779.1 194335985 6461086 913094..913201 1 NC_011060.1 hypothetical protein 913201 6461086 Ppha_0874 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017779.1 913094 D 324925 CDS YP_002017780.1 194335986 6461085 913198..913629 1 NC_011060.1 PFAM: glycoside hydrolase family 24; KEGG: cch:Cag_0702 probable phage-related lysozyme; lysozyme 913629 6461085 Ppha_0875 Pelodictyon phaeoclathratiforme BU-1 lysozyme YP_002017780.1 913198 D 324925 CDS YP_002017781.1 194335987 6461078 913841..917266 1 NC_011060.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 917266 6461078 Ppha_0876 Pelodictyon phaeoclathratiforme BU-1 ribonucleotide-diphosphate reductase subunit alpha YP_002017781.1 913841 D 324925 CDS YP_002017782.1 194335988 6461076 complement(917367..917999) 1 NC_011060.1 PFAM: radical SAM protein; KEGG: ppd:Ppro_1702 hydrolase, TatD family; radical SAM protein 917999 6461076 Ppha_0877 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017782.1 917367 R 324925 CDS YP_002017783.1 194335989 6461075 918448..919905 1 NC_011060.1 PFAM: homospermidine synthase; KEGG: mbn:Mboo_1047 homospermidine synthase; homospermidine synthase 919905 6461075 Ppha_0878 Pelodictyon phaeoclathratiforme BU-1 homospermidine synthase YP_002017783.1 918448 D 324925 CDS YP_002017784.1 194335990 6461074 919921..921060 1 NC_011060.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mbn:Mboo_1046 Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 921060 6461074 Ppha_0879 Pelodictyon phaeoclathratiforme BU-1 Orn/DAP/Arg decarboxylase 2 YP_002017784.1 919921 D 324925 CDS YP_002017785.1 194335991 6461073 complement(921244..921789) 1 NC_011060.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase 921789 6461073 Ppha_0880 Pelodictyon phaeoclathratiforme BU-1 pyruvoyl-dependent arginine decarboxylase YP_002017785.1 921244 R 324925 CDS YP_002017786.1 194335992 6461072 922617..923300 1 NC_011060.1 PFAM: protein of unknown function DUF134; KEGG: cph:Cpha266_1458 protein of unknown function DUF134; hypothetical protein 923300 6461072 Ppha_0881 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017786.1 922617 D 324925 CDS YP_002017787.1 194335993 6461070 923680..924192 1 NC_011060.1 KEGG: gur:Gura_2736 hypothetical protein; hypothetical protein 924192 6461070 Ppha_0882 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017787.1 923680 D 324925 CDS YP_002017788.1 194335994 6461069 924189..924524 1 NC_011060.1 KEGG: gvi:gll2960 hypothetical protein; hypothetical protein 924524 6461069 Ppha_0883 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017788.1 924189 D 324925 CDS YP_002017789.1 194335995 6461057 924636..924848 1 NC_011060.1 KEGG: mhu:Mhun_0632 hypothetical protein; hypothetical protein 924848 6461057 Ppha_0884 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017789.1 924636 D 324925 CDS YP_002017790.1 194335996 6461053 complement(924916..926628) 1 NC_011060.1 KEGG: amt:Amet_0623 transposase, IS4; hypothetical protein 926628 6461053 Ppha_0885 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017790.1 924916 R 324925 CDS YP_002017791.1 194335997 6461049 926916..927125 1 NC_011060.1 KEGG: cph:Cpha266_1440 hypothetical protein; hypothetical protein 927125 6461049 Ppha_0886 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017791.1 926916 D 324925 CDS YP_002017792.1 194335998 6461045 927338..927814 1 NC_011060.1 KEGG: cch:Cag_0704 hypothetical protein; hypothetical protein 927814 6461045 Ppha_0888 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017792.1 927338 D 324925 CDS YP_002017793.1 194335999 6461044 complement(928029..929420) 1 NC_011060.1 PFAM: AAA-4 family protein; KEGG: gur:Gura_2922 transcriptional regulator; transcriptional regulator 929420 6461044 Ppha_0889 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002017793.1 928029 R 324925 CDS YP_002017794.1 194336000 6461043 complement(929417..930073) 1 NC_011060.1 KEGG: gur:Gura_2921 hypothetical protein; hypothetical protein 930073 6461043 Ppha_0890 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017794.1 929417 R 324925 CDS YP_002017795.1 194336001 6461038 complement(930275..931450) 1 NC_011060.1 KEGG: cph:Cpha266_1443 hypothetical protein; hypothetical protein 931450 6461038 Ppha_0891 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017795.1 930275 R 324925 CDS YP_002017796.1 194336002 6461034 complement(931447..934812) 1 NC_011060.1 KEGG: cch:Cag_0843 hypothetical protein; hypothetical protein 934812 6461034 Ppha_0892 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017796.1 931447 R 324925 CDS YP_002017797.1 194336003 6461031 complement(935060..935413) 1 NC_011060.1 hypothetical protein 935413 6461031 Ppha_0893 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017797.1 935060 R 324925 CDS YP_002017798.1 194336004 6461029 complement(935930..936373) 1 NC_011060.1 hypothetical protein 936373 6461029 Ppha_0894 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017798.1 935930 R 324925 CDS YP_002017799.1 194336005 6461027 complement(936380..936544) 1 NC_011060.1 KEGG: cch:Cag_0843 hypothetical protein; hypothetical protein 936544 6461027 Ppha_0895 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017799.1 936380 R 324925 CDS YP_002017800.1 194336006 6461025 complement(936707..936985) 1 NC_011060.1 KEGG: btr:Btr_1076 hypothetical protein; hypothetical protein 936985 6461025 Ppha_0896 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017800.1 936707 R 324925 CDS YP_002017801.1 194336007 6461023 complement(936985..937212) 1 NC_011060.1 KEGG: cch:Cag_0841 hypothetical protein; hypothetical protein 937212 6461023 Ppha_0897 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017801.1 936985 R 324925 CDS YP_002017802.1 194336008 6461021 complement(937512..937802) 1 NC_011060.1 TIGRFAM: addiction module antidote protein; KEGG: mar:MAE_47260 hypothetical protein; transcriptional regulator 937802 6461021 Ppha_0898 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002017802.1 937512 R 324925 CDS YP_002017803.1 194336009 6461016 complement(937799..938107) 1 NC_011060.1 TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: gme:Gmet_2533 protein of unknown function DUF891; addiction module killer protein 938107 6461016 Ppha_0899 Pelodictyon phaeoclathratiforme BU-1 addiction module killer protein YP_002017803.1 937799 R 324925 CDS YP_002017804.1 194336010 6461015 complement(938247..938879) 1 NC_011060.1 KEGG: cch:Cag_0839 hypothetical protein; hypothetical protein 938879 6461015 Ppha_0900 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017804.1 938247 R 324925 CDS YP_002017805.1 194336011 6461013 complement(938879..940330) 1 NC_011060.1 KEGG: cch:Cag_0838 hypothetical protein; hypothetical protein 940330 6461013 Ppha_0901 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017805.1 938879 R 324925 CDS YP_002017806.1 194336012 6461009 940745..941002 1 NC_011060.1 KEGG: rfe:RF_0889 hypothetical protein; hypothetical protein 941002 6461009 Ppha_0902 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017806.1 940745 D 324925 CDS YP_002017807.1 194336013 6461004 941009..941269 1 NC_011060.1 KEGG: mar:MAE_20750 hypothetical protein; hypothetical protein 941269 6461004 Ppha_0903 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017807.1 941009 D 324925 CDS YP_002017808.1 194336014 6461003 complement(941357..942643) 1 NC_011060.1 KEGG: cph:Cpha266_2115 ATPase; ATPase 942643 6461003 Ppha_0904 Pelodictyon phaeoclathratiforme BU-1 ATPase YP_002017808.1 941357 R 324925 CDS YP_002017809.1 194336015 6461002 942886..943113 1 NC_011060.1 KEGG: rpe:RPE_0295 hypothetical protein; hypothetical protein 943113 6461002 Ppha_0905 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017809.1 942886 D 324925 CDS YP_002017810.1 194336016 6461000 943097..943357 1 NC_011060.1 KEGG: syn:ssl3692 hypothetical protein; hypothetical protein 943357 6461000 Ppha_0906 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017810.1 943097 D 324925 CDS YP_002017811.1 194336017 6460995 complement(943482..944189) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_1198 cell division ATP-binding protein FtsE; ABC transporter-like protein 944189 6460995 Ppha_0907 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017811.1 943482 R 324925 CDS YP_002017812.1 194336018 6460994 complement(944186..945187) 1 NC_011060.1 KEGG: cph:Cpha266_1780 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 945187 6460994 Ppha_0908 Pelodictyon phaeoclathratiforme BU-1 4-hydroxythreonine-4-phosphate dehydrogenase YP_002017812.1 944186 R 324925 CDS YP_002017813.1 194336019 6460993 complement(945191..945652) 1 NC_011060.1 KEGG: pvi:Cvib_1196 hypothetical protein; hypothetical protein 945652 6460993 Ppha_0909 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017813.1 945191 R 324925 CDS YP_002017814.1 194336020 6460989 complement(945823..946815) 1 NC_011060.1 PFAM: Polysulphide reductase NrfD; KEGG: cch:Cag_0618 formate-dependent nitrite reductase membrane component-like; polysulfide reductase NrfD 946815 6460989 Ppha_0910 Pelodictyon phaeoclathratiforme BU-1 polysulfide reductase NrfD YP_002017814.1 945823 R 324925 CDS YP_002017815.1 194336021 6460987 complement(946818..947384) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0619 NrfC protein; 4Fe-4S ferredoxin 947384 6460987 Ppha_0911 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002017815.1 946818 R 324925 CDS YP_002017816.1 194336022 6460986 complement(947388..949607) 1 NC_011060.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cch:Cag_0620 twin-arginine translocation pathway signal; molybdopterin oxidoreductase 949607 6460986 Ppha_0912 Pelodictyon phaeoclathratiforme BU-1 molybdopterin oxidoreductase YP_002017816.1 947388 R 324925 CDS YP_002017817.1 194336023 6460984 950522..950824 1 NC_011060.1 KEGG: cph:Cpha266_1712 N-6 DNA methylase; N-6 DNA methylase 950824 6460984 Ppha_0913 Pelodictyon phaeoclathratiforme BU-1 N-6 DNA methylase YP_002017817.1 950522 D 324925 CDS YP_002017818.1 194336024 6460983 950901..951221 1 NC_011060.1 PFAM: protein of unknown function DUF497; KEGG: cte:CT0821 hypothetical protein; hypothetical protein 951221 6460983 Ppha_0914 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017818.1 950901 D 324925 CDS YP_002017819.1 194336025 6460981 951181..951453 1 NC_011060.1 KEGG: cph:Cpha266_2182 hypothetical protein; hypothetical protein 951453 6460981 Ppha_0915 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017819.1 951181 D 324925 CDS YP_002017820.1 194336026 6460980 951661..952386 1 NC_011060.1 KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D; DNA-damage-inducible protein D 952386 dinD 6460980 dinD Pelodictyon phaeoclathratiforme BU-1 DNA-damage-inducible protein D YP_002017820.1 951661 D 324925 CDS YP_002017821.1 194336027 6460973 952727..953239 1 NC_011060.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cph:Cpha266_1068 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 953239 6460973 Ppha_0917 Pelodictyon phaeoclathratiforme BU-1 pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_002017821.1 952727 D 324925 CDS YP_002017822.1 194336028 6460968 953309..954127 1 NC_011060.1 PFAM: acid phosphatase (Class B); KEGG: cph:Cpha266_1069 acid phosphatase (class B); acid phosphatase (Class B) 954127 6460968 Ppha_0918 Pelodictyon phaeoclathratiforme BU-1 acid phosphatase (Class B) YP_002017822.1 953309 D 324925 CDS YP_002017823.1 194336029 6460966 954348..954686 1 NC_011060.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: cph:Cpha266_2430 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 954686 6460966 Ppha_0919 Pelodictyon phaeoclathratiforme BU-1 alkylphosphonate utilization operon protein PhnA YP_002017823.1 954348 D 324925 CDS YP_002017824.1 194336030 6460965 complement(954707..954982) 1 NC_011060.1 catalyzes the hydrolysis of acylphosphate; acylphosphatase 954982 6460965 Ppha_0920 Pelodictyon phaeoclathratiforme BU-1 acylphosphatase YP_002017824.1 954707 R 324925 CDS YP_002017825.1 194336031 6460953 complement(955140..956093) 1 NC_011060.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: plt:Plut_1551 cysteine synthase K/M/A; cysteine synthase A 956093 6460953 Ppha_0921 Pelodictyon phaeoclathratiforme BU-1 cysteine synthase A YP_002017825.1 955140 R 324925 CDS YP_002017826.1 194336032 6460947 complement(956481..957770) 1 NC_011060.1 PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: cph:Cpha266_1778 3-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase 957770 6460947 Ppha_0922 Pelodictyon phaeoclathratiforme BU-1 3-deoxy-D-manno-octulosonic-acid transferase YP_002017826.1 956481 R 324925 CDS YP_002017827.1 194336033 6460945 958001..958780 1 NC_011060.1 KEGG: cph:Cpha266_1775 hypothetical protein; hypothetical protein 958780 6460945 Ppha_0923 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017827.1 958001 D 324925 CDS YP_002017828.1 194336034 6460944 959112..960911 1 NC_011060.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1774 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 960911 6460944 Ppha_0924 Pelodictyon phaeoclathratiforme BU-1 DEAD/DEAH box helicase YP_002017828.1 959112 D 324925 CDS YP_002017829.1 194336035 6460942 961009..962403 1 NC_011060.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: plt:Plut_0588 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 962403 6460942 Ppha_0925 Pelodictyon phaeoclathratiforme BU-1 beta-lactamase domain-containing protein YP_002017829.1 961009 D 324925 CDS YP_002017830.1 194336036 6460941 962585..963064 1 NC_011060.1 KEGG: cph:Cpha266_1771 hypothetical protein; hypothetical protein 963064 6460941 Ppha_0926 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017830.1 962585 D 324925 CDS YP_002017831.1 194336037 6460936 complement(963077..963991) 1 NC_011060.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cph:Cpha266_1769 tyrosine recombinase XerD; tyrosine recombinase XerD 963991 6460936 Ppha_0927 Pelodictyon phaeoclathratiforme BU-1 tyrosine recombinase XerD YP_002017831.1 963077 R 324925 CDS YP_002017832.1 194336038 6460935 complement(963997..965334) 1 NC_011060.1 TIGRFAM: sun protein; transcription antitermination factor NusB; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cph:Cpha266_1768 sun protein; sun protein 965334 6460935 Ppha_0928 Pelodictyon phaeoclathratiforme BU-1 sun protein YP_002017832.1 963997 R 324925 CDS YP_002017833.1 194336039 6460932 965675..966967 1 NC_011060.1 KEGG: cte:CT0604 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 966967 6460932 Ppha_0929 Pelodictyon phaeoclathratiforme BU-1 O-acetylhomoserine/O-acetylserine sulfhydrylase YP_002017833.1 965675 D 324925 CDS YP_002017834.1 194336040 6460924 966973..968049 1 NC_011060.1 KEGG: cph:Cpha266_1766 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 968049 6460924 Ppha_0930 Pelodictyon phaeoclathratiforme BU-1 homoserine O-acetyltransferase YP_002017834.1 966973 D 324925 CDS YP_002017835.1 194336041 6460923 complement(968034..969329) 1 NC_011060.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 969329 6460923 Ppha_0931 Pelodictyon phaeoclathratiforme BU-1 seryl-tRNA synthetase YP_002017835.1 968034 R 324925 CDS YP_002017836.1 194336042 6460920 complement(969348..969806) 1 NC_011060.1 PFAM: GatB/Yqey domain protein; KEGG: cph:Cpha266_1764 GatB/YqeY domain protein; GatB/Yqey domain-containing protein 969806 6460920 Ppha_0932 Pelodictyon phaeoclathratiforme BU-1 GatB/Yqey domain-containing protein YP_002017836.1 969348 R 324925 CDS YP_002017837.1 194336043 6460917 complement(969896..970627) 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1763 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 970627 6460917 Ppha_0933 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002017837.1 969896 R 324925 CDS YP_002017838.1 194336044 6460916 970841..971095 1 NC_011060.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cph:Cpha266_1762 cold-shock DNA-binding protein family; cold-shock DNA-binding domain-containing protein 971095 6460916 Ppha_0934 Pelodictyon phaeoclathratiforme BU-1 cold-shock DNA-binding domain-containing protein YP_002017838.1 970841 D 324925 CDS YP_002017839.1 194336045 6460914 complement(971107..971775) 1 NC_011060.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 971775 radC 6460914 radC Pelodictyon phaeoclathratiforme BU-1 DNA repair protein RadC YP_002017839.1 971107 R 324925 CDS YP_002017840.1 194336046 6460912 complement(971913..972344) 1 NC_011060.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cph:Cpha266_1847 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; hypothetical protein 972344 6460912 Ppha_0936 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017840.1 971913 R 324925 CDS YP_002017841.1 194336047 6460905 972566..972682 1 NC_011060.1 hypothetical protein 972682 6460905 Ppha_0937 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017841.1 972566 D 324925 CDS YP_002017842.1 194336048 6460904 complement(972637..972984) 1 NC_011060.1 KEGG: cph:Cpha266_1406 hypothetical protein; hypothetical protein 972984 6460904 Ppha_0938 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017842.1 972637 R 324925 CDS YP_002017843.1 194336049 6460903 complement(973224..974909) 1 NC_011060.1 PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: pfl:PFL_1466 hemolysin activator protein, HlyB family; Polypeptide-transport-associated domain-containing protein ShlB-type 974909 6460903 Ppha_0939 Pelodictyon phaeoclathratiforme BU-1 Polypeptide-transport-associated domain-containing protein ShlB-type YP_002017843.1 973224 R 324925 CDS YP_002017844.1 194336050 6460902 complement(974995..980070) 1 NC_011060.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: cch:Cag_1512 filamentous haemagglutinin-like; filamentous hemagglutinin family outer membrane protein 980070 6460902 Ppha_0940 Pelodictyon phaeoclathratiforme BU-1 filamentous hemagglutinin family outer membrane protein YP_002017844.1 974995 R 324925 CDS YP_002017845.1 194336051 6460900 980363..981181 1 NC_011060.1 KEGG: cph:Cpha266_1806 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase 981181 6460900 Ppha_0941 Pelodictyon phaeoclathratiforme BU-1 serine O-acetyltransferase YP_002017845.1 980363 D 324925 CDS YP_002017846.1 194336052 6460899 complement(981172..982365) 1 NC_011060.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 982365 6460899 Ppha_0942 Pelodictyon phaeoclathratiforme BU-1 chorismate synthase YP_002017846.1 981172 R 324925 CDS YP_002017847.1 194336053 6460897 complement(982448..983434) 1 NC_011060.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 983434 6460897 Ppha_0943 Pelodictyon phaeoclathratiforme BU-1 delta-aminolevulinic acid dehydratase YP_002017847.1 982448 R 324925 CDS YP_002017848.1 194336054 6460896 complement(983546..984670) 1 NC_011060.1 KEGG: plt:Plut_1434 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 984670 6460896 Ppha_0944 Pelodictyon phaeoclathratiforme BU-1 sodium ion-translocating decarboxylase subunit beta YP_002017848.1 983546 R 324925 CDS YP_002017849.1 194336055 6460894 complement(984690..985109) 1 NC_011060.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: plt:Plut_1433 biotin carboxyl carrier protein; biotin/lipoyl attachment domain-containing protein 985109 6460894 Ppha_0945 Pelodictyon phaeoclathratiforme BU-1 biotin/lipoyl attachment domain-containing protein YP_002017849.1 984690 R 324925 CDS YP_002017850.1 194336056 6460880 complement(985106..985486) 1 NC_011060.1 KEGG: pvi:Cvib_1249 hypothetical protein; hypothetical protein 985486 6460880 Ppha_0946 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017850.1 985106 R 324925 CDS YP_002017851.1 194336057 6460879 complement(985500..987041) 1 NC_011060.1 PFAM: carboxyl transferase; KEGG: plt:Plut_1431 propionyl-CoA carboxylase beta chain; carboxyl transferase 987041 6460879 Ppha_0947 Pelodictyon phaeoclathratiforme BU-1 carboxyl transferase YP_002017851.1 985500 R 324925 CDS YP_002017852.1 194336058 6460877 987191..987961 1 NC_011060.1 KEGG: pvi:Cvib_1247 histidinol-phosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; histidinol-phosphate phosphatase 987961 6460877 Ppha_0948 Pelodictyon phaeoclathratiforme BU-1 histidinol-phosphate phosphatase YP_002017852.1 987191 D 324925 CDS YP_002017853.1 194336059 6460868 complement(987977..988720) 1 NC_011060.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: cch:Cag_1514 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 988720 6460868 Ppha_0949 Pelodictyon phaeoclathratiforme BU-1 uroporphyrinogen-III synthase YP_002017853.1 987977 R 324925 CDS YP_002017854.1 194336060 6460865 complement(988720..989661) 1 NC_011060.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 989661 hemC 6460865 hemC Pelodictyon phaeoclathratiforme BU-1 porphobilinogen deaminase YP_002017854.1 988720 R 324925 CDS YP_002017855.1 194336061 6460864 complement(989681..990958) 1 NC_011060.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 990958 hemA 6460864 hemA Pelodictyon phaeoclathratiforme BU-1 glutamyl-tRNA reductase YP_002017855.1 989681 R 324925 CDS YP_002017856.1 194336062 6460862 complement(991078..991923) 1 NC_011060.1 PFAM: cytochrome c assembly protein; KEGG: plt:Plut_1425 HemX protein; cytochrome c assembly protein 991923 6460862 Ppha_0952 Pelodictyon phaeoclathratiforme BU-1 cytochrome c assembly protein YP_002017856.1 991078 R 324925 CDS YP_002017857.1 194336063 6460861 992098..993924 1 NC_011060.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cph:Cpha266_1793 GTP-binding protein TypA; GTP-binding protein TypA 993924 6460861 Ppha_0953 Pelodictyon phaeoclathratiforme BU-1 GTP-binding protein TypA YP_002017857.1 992098 D 324925 CDS YP_002017858.1 194336064 6460856 994102..995691 1 NC_011060.1 PFAM: ferredoxin-dependent glutamate synthase; Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1570 glutamate synthase (NADPH) GltB2 subunit; Glutamate synthase (NADPH) 995691 6460856 Ppha_0954 Pelodictyon phaeoclathratiforme BU-1 Glutamate synthase (NADPH) YP_002017858.1 994102 D 324925 CDS YP_002017859.1 194336065 6461019 995753..996253 1 NC_011060.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1571 rubrerythrin; rubrerythrin 996253 6461019 Ppha_0955 Pelodictyon phaeoclathratiforme BU-1 rubrerythrin YP_002017859.1 995753 D 324925 CDS YP_002017860.1 194336066 6460956 complement(996470..997453) 1 NC_011060.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: pvi:Cvib_0086 helix-turn-helix, type 11 domain protein; helix-turn-helix type 11 domain-containing protein 997453 6460956 Ppha_0956 Pelodictyon phaeoclathratiforme BU-1 helix-turn-helix type 11 domain-containing protein YP_002017860.1 996470 R 324925 CDS YP_002017861.1 194336067 6461883 997624..998478 1 NC_011060.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: plt:Plut_0825 ribosylglycohydrolase; ADP-ribosylation/Crystallin J1 998478 6461883 Ppha_0957 Pelodictyon phaeoclathratiforme BU-1 ADP-ribosylation/Crystallin J1 YP_002017861.1 997624 D 324925 CDS YP_002017862.1 194336068 6462114 complement(998640..999371) 1 NC_011060.1 KEGG: nme:NMB0252 hypothetical protein; hypothetical protein 999371 6462114 Ppha_0958 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017862.1 998640 R 324925 CDS YP_002017863.1 194336069 6462473 complement(999468..999935) 1 NC_011060.1 KEGG: azo:azo3723 hypothetical protein; hypothetical protein 999935 6462473 Ppha_0959 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017863.1 999468 R 324925 CDS YP_002017864.1 194336070 6461416 complement(999981..1000124) 1 NC_011060.1 hypothetical protein 1000124 6461416 Ppha_0960 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017864.1 999981 R 324925 CDS YP_002017865.1 194336071 6462338 complement(1000124..1000705) 1 NC_011060.1 KEGG: dar:Daro_1651 hypothetical protein; hypothetical protein 1000705 6462338 Ppha_0961 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017865.1 1000124 R 324925 CDS YP_002017866.1 194336072 6462613 complement(1000860..1001543) 1 NC_011060.1 hypothetical protein 1001543 6462613 Ppha_0962 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017866.1 1000860 R 324925 CDS YP_002017867.1 194336073 6460962 1002435..1003676 1 NC_011060.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1003676 6460962 Ppha_0963 Pelodictyon phaeoclathratiforme BU-1 RNA-directed DNA polymerase YP_002017867.1 1002435 D 324925 CDS YP_002017868.1 194336074 6462550 1004312..1004518 1 NC_011060.1 KEGG: cch:Cag_1342 hypothetical protein; hypothetical protein 1004518 6462550 Ppha_0965 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017868.1 1004312 D 324925 CDS YP_002017869.1 194336075 6460974 complement(1004726..1005946) 1 NC_011060.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pvi:Cvib_0620 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1005946 6460974 Ppha_0966 Pelodictyon phaeoclathratiforme BU-1 transposase IS204/IS1001/IS1096/IS1165 family protein YP_002017869.1 1004726 R 324925 CDS YP_002017870.1 194336076 6462307 1006507..1008033 1 NC_011060.1 KEGG: pvi:Cvib_0081 hypothetical protein; hypothetical protein 1008033 6462307 Ppha_0967 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017870.1 1006507 D 324925 CDS YP_002017871.1 194336077 6461082 1008074..1008589 1 NC_011060.1 PFAM: Protein of unknown function DUF1790; KEGG: pvi:Cvib_0068 hypothetical protein; hypothetical protein 1008589 6461082 Ppha_0968 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017871.1 1008074 D 324925 CDS YP_002017872.1 194336078 6461959 complement(1008610..1009455) 1 NC_011060.1 KEGG: cch:Cag_0294 hypothetical protein; hypothetical protein 1009455 6461959 Ppha_0969 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017872.1 1008610 R 324925 CDS YP_002017873.1 194336079 6461524 complement(1009452..1010195) 1 NC_011060.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dvu:DVU2042 Fic family protein; filamentation induced by cAMP protein fic 1010195 6461524 Ppha_0970 Pelodictyon phaeoclathratiforme BU-1 filamentation induced by cAMP protein fic YP_002017873.1 1009452 R 324925 CDS YP_002017874.1 194336080 6462474 complement(1010207..1011040) 1 NC_011060.1 KEGG: nwi:Nwi_3122 hypothetical protein; hypothetical protein 1011040 6462474 Ppha_0971 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017874.1 1010207 R 324925 CDS YP_002017875.1 194336081 6461884 complement(1011022..1011285) 1 NC_011060.1 hypothetical protein 1011285 6461884 Ppha_0972 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017875.1 1011022 R 324925 CDS YP_002017876.1 194336082 6461215 complement(1011272..1012360) 1 NC_011060.1 KEGG: tdn:Tmden_0943 DNA-damage-inducible protein D; DNA-damage-inducible protein D 1012360 dinD 6461215 dinD Pelodictyon phaeoclathratiforme BU-1 DNA-damage-inducible protein D YP_002017876.1 1011272 R 324925 CDS YP_002017877.1 194336083 6461478 complement(1012860..1013147) 1 NC_011060.1 SMART: helix-turn-helix domain protein; KEGG: plt:Plut_1042 transcriptional regulator, XRE family; XRE family transcriptional regulator 1013147 6461478 Ppha_0975 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017877.1 1012860 R 324925 CDS YP_002017878.1 194336084 6462475 1013576..1013791 1 NC_011060.1 hypothetical protein 1013791 6462475 Ppha_0976 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017878.1 1013576 D 324925 CDS YP_002017879.1 194336085 6461958 1013831..1014088 1 NC_011060.1 KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein 1014088 6461958 Ppha_0977 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017879.1 1013831 D 324925 CDS YP_002017880.1 194336086 6461148 complement(1014398..1015510) 1 NC_011060.1 KEGG: cch:Cag_0400 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Sigma-70 region 4 type 2; chlorophyllide reductase iron protein subunit X 1015510 6461148 Ppha_0979 Pelodictyon phaeoclathratiforme BU-1 chlorophyllide reductase iron protein subunit X YP_002017880.1 1014398 R 324925 CDS YP_002017881.1 194336087 6460979 complement(1015521..1016525) 1 NC_011060.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cch:Cag_0401 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide; chlorophyll synthesis pathway protein BchC 1016525 6460979 Ppha_0980 Pelodictyon phaeoclathratiforme BU-1 chlorophyll synthesis pathway protein BchC YP_002017881.1 1015521 R 324925 CDS YP_002017882.1 194336088 6461809 complement(1016541..1017014) 1 NC_011060.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cch:Cag_0402 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 1017014 6461809 Ppha_0981 Pelodictyon phaeoclathratiforme BU-1 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD YP_002017882.1 1016541 R 324925 CDS YP_002017883.1 194336089 6462022 complement(1017124..1018827) 1 NC_011060.1 PFAM: extracellular solute-binding protein family 5; KEGG: cph:Cpha266_1789 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 1018827 6462022 Ppha_0982 Pelodictyon phaeoclathratiforme BU-1 family 5 extracellular solute-binding protein YP_002017883.1 1017124 R 324925 CDS YP_002017884.1 194336090 6461566 1019218..1020135 1 NC_011060.1 PFAM: peptidase C1A papain; KEGG: mba:Mbar_A0734 cysteine protease (papain C1 family); peptidase C1A papain 1020135 6461566 Ppha_0983 Pelodictyon phaeoclathratiforme BU-1 peptidase C1A papain YP_002017884.1 1019218 D 324925 CDS YP_002017885.1 194336091 6462295 1020305..1021477 1 NC_011060.1 PFAM: creatinase; peptidase M24; KEGG: cph:Cpha266_2518 peptidase M24; peptidase M24 1021477 6462295 Ppha_0984 Pelodictyon phaeoclathratiforme BU-1 peptidase M24 YP_002017885.1 1020305 D 324925 CDS YP_002017886.1 194336092 6462576 1021547..1021804 1 NC_011060.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: pca:Pcar_1787 hypothetical protein; RelE/StbE family addiction module toxin 1021804 6462576 Ppha_0985 Pelodictyon phaeoclathratiforme BU-1 RelE/StbE family addiction module toxin YP_002017886.1 1021547 D 324925 CDS YP_002017887.1 194336093 6461454 1021801..1022193 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: pca:Pcar_1786 helix-turn-helix transcriptional regulator; XRE family transcriptional regulator 1022193 6461454 Ppha_0986 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002017887.1 1021801 D 324925 CDS YP_002017888.1 194336094 6462060 1022229..1022747 1 NC_011060.1 PFAM: DinB family protein; KEGG: cte:CT1840 hypothetical protein; DinB family protein 1022747 6462060 Ppha_0987 Pelodictyon phaeoclathratiforme BU-1 DinB family protein YP_002017888.1 1022229 D 324925 CDS YP_002017889.1 194336095 6461493 1022787..1023242 1 NC_011060.1 KEGG: pna:Pnap_4866 hypothetical protein; hypothetical protein 1023242 6461493 Ppha_0988 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017889.1 1022787 D 324925 CDS YP_002017890.1 194336096 6462014 1023239..1025455 1 NC_011060.1 KEGG: pvi:Cvib_1272 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding class 1; AAA ATPase; helicase, RecD/TraA family 1025455 6462014 Ppha_0989 Pelodictyon phaeoclathratiforme BU-1 helicase, RecD/TraA family YP_002017890.1 1023239 D 324925 CDS YP_002017891.1 194336097 6461446 1025543..1026901 1 NC_011060.1 PFAM: PUCC protein; KEGG: cte:CT1441 PucC protein; PUCC protein 1026901 6461446 Ppha_0990 Pelodictyon phaeoclathratiforme BU-1 PUCC protein YP_002017891.1 1025543 D 324925 CDS YP_002017892.1 194336098 6462489 1026924..1027859 1 NC_011060.1 PFAM: radical SAM protein; KEGG: cch:Cag_0688 MoaA/NifB/PqqE family protein; radical SAM protein 1027859 6462489 Ppha_0991 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017892.1 1026924 D 324925 CDS YP_002017893.1 194336099 6461618 complement(1027856..1028740) 1 NC_011060.1 KEGG: cch:Cag_1146 hypothetical protein; hypothetical protein 1028740 6461618 Ppha_0992 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017893.1 1027856 R 324925 CDS YP_002017894.1 194336100 6462152 complement(1028737..1030239) 1 NC_011060.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cch:Cag_0439 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1030239 6462152 Ppha_0993 Pelodictyon phaeoclathratiforme BU-1 integral membrane sensor signal transduction histidine kinase YP_002017894.1 1028737 R 324925 CDS YP_002017895.1 194336101 6461494 complement(1030236..1030919) 1 NC_011060.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_1205 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 1030919 6461494 Ppha_0994 Pelodictyon phaeoclathratiforme BU-1 winged helix family two component transcriptional regulator YP_002017895.1 1030236 R 324925 CDS YP_002017896.1 194336102 6461311 complement(1030938..1031486) 1 NC_011060.1 KEGG: cch:Cag_0441 hypothetical protein; hypothetical protein 1031486 6461311 Ppha_0995 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017896.1 1030938 R 324925 CDS YP_002017897.1 194336103 6461007 1031760..1032644 1 NC_011060.1 PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344; hypothetical protein 1032644 6461007 Ppha_0996 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017897.1 1031760 D 324925 CDS YP_002017898.1 194336104 6462034 complement(1032707..1033087) 1 NC_011060.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: cch:Cag_0277 Sel1-like repeat; Sel1 domain-containing protein repeat-containing protein 1033087 6462034 Ppha_0997 Pelodictyon phaeoclathratiforme BU-1 Sel1 domain-containing protein repeat-containing protein YP_002017898.1 1032707 R 324925 CDS YP_002017899.1 194336105 6462250 complement(1033109..1033864) 1 NC_011060.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1033864 6462250 Ppha_0998 Pelodictyon phaeoclathratiforme BU-1 imidazole glycerol phosphate synthase subunit HisF YP_002017899.1 1033109 R 324925 CDS YP_002017900.1 194336106 6461798 complement(1033965..1034984) 1 NC_011060.1 PFAM: acyltransferase 3; KEGG: plt:Plut_1385 hypothetical protein; acyltransferase 3 1034984 6461798 Ppha_0999 Pelodictyon phaeoclathratiforme BU-1 acyltransferase 3 YP_002017900.1 1033965 R 324925 CDS YP_002017901.1 194336107 6461559 complement(1034981..1035505) 1 NC_011060.1 KEGG: plt:Plut_1384 hypothetical protein; hypothetical protein 1035505 6461559 Ppha_1000 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017901.1 1034981 R 324925 CDS YP_002017902.1 194336108 6462480 complement(1035586..1036821) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1812 glycosyl transferase, group 1; group 1 glycosyl transferase 1036821 6462480 Ppha_1001 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017902.1 1035586 R 324925 CDS YP_002017903.1 194336109 6462087 complement(1036926..1038023) 1 NC_011060.1 PFAM: radical SAM protein; KEGG: cph:Cpha266_1814 radical SAM protein; radical SAM protein 1038023 6462087 Ppha_1002 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017903.1 1036926 R 324925 CDS YP_002017904.1 194336110 6462505 complement(1038061..1038441) 1 NC_011060.1 KEGG: cph:Cpha266_1815 hypothetical protein; hypothetical protein 1038441 6462505 Ppha_1003 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017904.1 1038061 R 324925 CDS YP_002017905.1 194336111 6461761 complement(1038497..1039909) 1 NC_011060.1 KEGG: cph:Cpha266_1816 hypothetical protein; hypothetical protein 1039909 6461761 Ppha_1004 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017905.1 1038497 R 324925 CDS YP_002017906.1 194336112 6461542 complement(1039921..1040412) 1 NC_011060.1 KEGG: cph:Cpha266_1817 serine O-acetyltransferase; serine O-acetyltransferase 1040412 6461542 Ppha_1005 Pelodictyon phaeoclathratiforme BU-1 serine O-acetyltransferase YP_002017906.1 1039921 R 324925 CDS YP_002017907.1 194336113 6461037 complement(1040412..1041560) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1818 glycosyl transferase, group 1; group 1 glycosyl transferase 1041560 6461037 Ppha_1006 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017907.1 1040412 R 324925 CDS YP_002017908.1 194336114 6461751 complement(1041586..1043838) 1 NC_011060.1 KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like; hypothetical protein 1043838 6461751 Ppha_1007 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017908.1 1041586 R 324925 CDS YP_002017909.1 194336115 6461122 complement(1043841..1045592) 1 NC_011060.1 PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_0889 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 1045592 6461122 Ppha_1008 Pelodictyon phaeoclathratiforme BU-1 polysaccharide biosynthesis protein YP_002017909.1 1043841 R 324925 CDS YP_002017910.1 194336116 6462282 complement(1045692..1046609) 1 NC_011060.1 PFAM: glycosyl transferase family 8; KEGG: cph:Cpha266_1821 glycosyl transferase, family 8; glycosyl transferase family protein 1046609 6462282 Ppha_1009 Pelodictyon phaeoclathratiforme BU-1 glycosyl transferase family protein YP_002017910.1 1045692 R 324925 CDS YP_002017911.1 194336117 6462110 complement(1046625..1047800) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1822 glycosyl transferase, group 1; group 1 glycosyl transferase 1047800 6462110 Ppha_1010 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002017911.1 1046625 R 324925 CDS YP_002017912.1 194336118 6462654 complement(1047874..1049040) 1 NC_011060.1 PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein; polysaccharide export protein 1049040 6462654 Ppha_1011 Pelodictyon phaeoclathratiforme BU-1 polysaccharide export protein YP_002017912.1 1047874 R 324925 CDS YP_002017913.1 194336119 6461356 complement(1049050..1049574) 1 NC_011060.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: cph:Cpha266_1824 serine O-acetyltransferase; transferase hexapeptide repeat containing protein 1049574 6461356 Ppha_1012 Pelodictyon phaeoclathratiforme BU-1 transferase hexapeptide repeat containing protein YP_002017913.1 1049050 R 324925 CDS YP_002017914.1 194336120 6463509 complement(1049583..1050587) 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2; family 2 glycosyl transferase 1050587 6463509 Ppha_1013 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002017914.1 1049583 R 324925 CDS YP_002017915.1 194336121 6463745 complement(1050580..1051023) 1 NC_011060.1 KEGG: cph:Cpha266_1826 anti-sigma regulatory factor, serine/threonine protein kinase; anti-sigma regulatory factor, serine/threonine protein kinase 1051023 6463745 Ppha_1014 Pelodictyon phaeoclathratiforme BU-1 anti-sigma regulatory factor, serine/threonine protein kinase YP_002017915.1 1050580 R 324925 CDS YP_002017916.1 194336122 6463524 complement(1051058..1051381) 1 NC_011060.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1366 anti-anti-sigma regulatory factor, SpoIIAA; anti-sigma-factor antagonist 1051381 6463524 Ppha_1015 Pelodictyon phaeoclathratiforme BU-1 anti-sigma-factor antagonist YP_002017916.1 1051058 R 324925 CDS YP_002017917.1 194336123 6461365 complement(1051394..1052770) 1 NC_011060.1 KEGG: cph:Cpha266_1828 nucleoside-diphosphate-sugar pyrophosphorylase; nucleoside-diphosphate-sugar pyrophosphorylase 1052770 6461365 Ppha_1016 Pelodictyon phaeoclathratiforme BU-1 nucleoside-diphosphate-sugar pyrophosphorylase YP_002017917.1 1051394 R 324925 CDS YP_002017918.1 194336124 6461595 complement(1052780..1053133) 1 NC_011060.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cph:Cpha266_1829 anti-sigma-factor antagonist; anti-sigma-factor antagonist 1053133 6461595 Ppha_1017 Pelodictyon phaeoclathratiforme BU-1 anti-sigma-factor antagonist YP_002017918.1 1052780 R 324925 CDS YP_002017919.1 194336125 6461194 complement(1053150..1053869) 1 NC_011060.1 PFAM: sugar transferase; KEGG: cph:Cpha266_1830 undecaprenyl-phosphate galactose phosphotransferase; undecaprenyl-phosphate galactose phosphotransferase 1053869 6461194 Ppha_1018 Pelodictyon phaeoclathratiforme BU-1 undecaprenyl-phosphate galactose phosphotransferase YP_002017919.1 1053150 R 324925 CDS YP_002017920.1 194336126 6461096 complement(1053859..1055331) 1 NC_011060.1 KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 1055331 6461096 Ppha_1019 Pelodictyon phaeoclathratiforme BU-1 WecB/TagA/CpsF family glycosyl transferase YP_002017920.1 1053859 R 324925 CDS YP_002017921.1 194336127 6461292 complement(1055355..1056533) 1 NC_011060.1 PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: cph:Cpha266_1832 sigma54 specific transcriptional regulator, Fis family; Fis family two component sigma-54 specific transcriptional regulator 1056533 6461292 Ppha_1020 Pelodictyon phaeoclathratiforme BU-1 Fis family two component sigma-54 specific transcriptional regulator YP_002017921.1 1055355 R 324925 CDS YP_002017922.1 194336128 6461239 complement(1056593..1058287) 1 NC_011060.1 KEGG: cph:Cpha266_1833 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; Stage II sporulation E family protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; PAS/PAC sensor protein 1058287 6461239 Ppha_1021 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor protein YP_002017922.1 1056593 R 324925 CDS YP_002017923.1 194336129 6461244 1058585..1058806 1 NC_011060.1 hypothetical protein 1058806 6461244 Ppha_1022 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017923.1 1058585 D 324925 CDS YP_002017924.1 194336130 6462744 1058830..1059180 1 NC_011060.1 KEGG: cph:Cpha266_1906 hypothetical protein; hypothetical protein 1059180 6462744 Ppha_1023 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017924.1 1058830 D 324925 CDS YP_002017925.1 194336131 6462255 1059200..1060261 1 NC_011060.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: cph:Cpha266_1905 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1060261 6462255 Ppha_1024 Pelodictyon phaeoclathratiforme BU-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002017925.1 1059200 D 324925 CDS YP_002017926.1 194336132 6461481 1060242..1061156 1 NC_011060.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1061156 6461481 Ppha_1025 Pelodictyon phaeoclathratiforme BU-1 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_002017926.1 1060242 D 324925 CDS YP_002017927.1 194336133 6461452 1061172..1062047 1 NC_011060.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1903 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1062047 6461452 Ppha_1026 Pelodictyon phaeoclathratiforme BU-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002017927.1 1061172 D 324925 CDS YP_002017928.1 194336134 6463456 1062098..1063354 1 NC_011060.1 PFAM: peptidase M48 Ste24p; KEGG: cph:Cpha266_1902 STE24 endopeptidase; Ste24 endopeptidase 1063354 6463456 Ppha_1027 Pelodictyon phaeoclathratiforme BU-1 Ste24 endopeptidase YP_002017928.1 1062098 D 324925 CDS YP_002017929.1 194336135 6461451 1063372..1064421 1 NC_011060.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cph:Cpha266_1901 porphyromonas-type peptidyl-arginine deiminase; Agmatine deiminase 1064421 6461451 Ppha_1028 Pelodictyon phaeoclathratiforme BU-1 Agmatine deiminase YP_002017929.1 1063372 D 324925 CDS YP_002017930.1 194336136 6462107 complement(1064523..1065455) 1 NC_011060.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 1065455 6462107 Ppha_1029 Pelodictyon phaeoclathratiforme BU-1 malate dehydrogenase YP_002017930.1 1064523 R 324925 CDS YP_002017931.1 194336137 6463603 complement(1065581..1065835) 1 NC_011060.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1065835 rpmA 6463603 rpmA Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L27 YP_002017931.1 1065581 R 324925 CDS YP_002017932.1 194336138 6461237 complement(1065873..1066163) 1 NC_011060.1 PFAM: ribosomal protein L21; KEGG: plt:Plut_1508 50S ribosomal protein L21; 50S ribosomal protein L21 1066163 rplU 6461237 rplU Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L21 YP_002017932.1 1065873 R 324925 CDS YP_002017933.1 194336139 6462502 complement(1066251..1066688) 1 NC_011060.1 KEGG: cph:Cpha266_1897 hypothetical protein; hypothetical protein 1066688 6462502 Ppha_1032 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017933.1 1066251 R 324925 CDS YP_002017934.1 194336140 6462655 1066873..1069491 1 NC_011060.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1069491 6462655 Ppha_1033 Pelodictyon phaeoclathratiforme BU-1 DNA mismatch repair protein MutS YP_002017934.1 1066873 D 324925 CDS YP_002017935.1 194336141 6462685 1069491..1070915 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1895 radical SAM protein; radical SAM protein 1070915 6462685 Ppha_1034 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002017935.1 1069491 D 324925 CDS YP_002017936.1 194336142 6462723 1071109..1071330 1 NC_011060.1 KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein 1071330 6462723 Ppha_1035 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017936.1 1071109 D 324925 CDS YP_002017937.1 194336143 6462644 1071528..1071752 1 NC_011060.1 KEGG: sun:SUN_0701 hypothetical protein; hypothetical protein 1071752 6462644 Ppha_1037 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017937.1 1071528 D 324925 CDS YP_002017938.1 194336144 6462650 complement(1071863..1072132) 1 NC_011060.1 KEGG: rca:Rcas_0956 hypothetical protein; hypothetical protein 1072132 6462650 Ppha_1038 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017938.1 1071863 R 324925 CDS YP_002017939.1 194336145 6462679 1072414..1073967 1 NC_011060.1 PFAM: protein of unknown function DUF323; SMART: TIR protein; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; hypothetical protein 1073967 6462679 Ppha_1040 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017939.1 1072414 D 324925 CDS YP_002017940.1 194336146 6462890 1074299..1076011 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: amt:Amet_0623 transposase, IS4; transposase IS4 family protein 1076011 6462890 Ppha_1041 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002017940.1 1074299 D 324925 CDS YP_002017941.1 194336147 6463644 1076109..1076390 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cch:Cag_0956 prevent-host-death protein; prevent-host-death family protein 1076390 6463644 Ppha_1042 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002017941.1 1076109 D 324925 CDS YP_002017942.1 194336148 6463562 1076387..1076716 1 NC_011060.1 PFAM: plasmid stabilization system; KEGG: cch:Cag_0957 hypothetical protein; plasmid stabilization system 1076716 6463562 Ppha_1043 Pelodictyon phaeoclathratiforme BU-1 plasmid stabilization system YP_002017942.1 1076387 D 324925 CDS YP_002017943.1 194336149 6462628 1076911..1077507 1 NC_011060.1 KEGG: cph:Cpha266_1892 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase 1077507 6462628 Ppha_1044 Pelodictyon phaeoclathratiforme BU-1 HAD-superfamily hydrolase YP_002017943.1 1076911 D 324925 CDS YP_002017944.1 194336150 6462959 1077510..1077923 1 NC_011060.1 PFAM: Class I peptide chain release factor; KEGG: cch:Cag_1326 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 1077923 6462959 Ppha_1045 Pelodictyon phaeoclathratiforme BU-1 peptidyl-tRNA hydrolase domain-containing protein YP_002017944.1 1077510 D 324925 CDS YP_002017945.1 194336151 6462235 1078094..1079200 1 NC_011060.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: stm:STM3529 glycerol dehydrogenase; iron-containing alcohol dehydrogenase 1079200 6462235 Ppha_1046 Pelodictyon phaeoclathratiforme BU-1 iron-containing alcohol dehydrogenase YP_002017945.1 1078094 D 324925 CDS YP_002017946.1 194336152 6462687 1079289..1082840 1 NC_011060.1 PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; signal transduction protein with Nacht domain 1082840 6462687 Ppha_1047 Pelodictyon phaeoclathratiforme BU-1 signal transduction protein with Nacht domain YP_002017946.1 1079289 D 324925 CDS YP_002017947.1 194336153 6463049 complement(1083038..1083367) 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_1777 PIN (PilT N terminus) domain; PilT protein domain-containing protein 1083367 6463049 Ppha_1048 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002017947.1 1083038 R 324925 CDS YP_002017948.1 194336154 6462039 complement(1083370..1083597) 1 NC_011060.1 KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein 1083597 6462039 Ppha_1049 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017948.1 1083370 R 324925 CDS YP_002017949.1 194336155 6462073 complement(1083804..1084073) 1 NC_011060.1 KEGG: bmu:Bmul_6243 hypothetical protein; hypothetical protein 1084073 6462073 Ppha_1050 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017949.1 1083804 R 324925 CDS YP_002017950.1 194336156 6463491 complement(1084073..1084588) 1 NC_011060.1 KEGG: rme:Rmet_6188 transposase Tn3; transposase Tn3 1084588 6463491 Ppha_1051 Pelodictyon phaeoclathratiforme BU-1 transposase Tn3 YP_002017950.1 1084073 R 324925 CDS YP_002017951.1 194336157 6461641 1084750..1085310 1 NC_011060.1 PFAM: resolvase; KEGG: dsh:Dshi_4084 resolvase; resolvase 1085310 6461641 Ppha_1052 Pelodictyon phaeoclathratiforme BU-1 resolvase YP_002017951.1 1084750 D 324925 CDS YP_002017952.1 194336158 6462967 1085366..1086037 1 NC_011060.1 KEGG: cph:Cpha266_2057 hypothetical protein; hypothetical protein 1086037 6462967 Ppha_1053 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017952.1 1085366 D 324925 CDS YP_002017953.1 194336159 6463729 1086034..1086336 1 NC_011060.1 KEGG: cph:Cpha266_2056 hypothetical protein; hypothetical protein 1086336 6463729 Ppha_1054 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017953.1 1086034 D 324925 CDS YP_002017954.1 194336160 6461012 1086946..1087572 1 NC_011060.1 KEGG: plt:Plut_0829 Legionella vir region protein; vir region protein-like protein 1087572 6461012 Ppha_1056 Pelodictyon phaeoclathratiforme BU-1 vir region protein-like protein YP_002017954.1 1086946 D 324925 CDS YP_002017955.1 194336161 6462341 complement(1087579..1089330) 1 NC_011060.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1327 ATPase; ABC transporter-like protein 1089330 6462341 Ppha_1057 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017955.1 1087579 R 324925 CDS YP_002017956.1 194336162 6460963 1089413..1089814 1 NC_011060.1 PFAM: regulatory protein MerR; KEGG: cph:Cpha266_1889 transcriptional regulator, MerR family; MerR family transcriptional regulator 1089814 6460963 Ppha_1058 Pelodictyon phaeoclathratiforme BU-1 MerR family transcriptional regulator YP_002017956.1 1089413 D 324925 CDS YP_002017957.1 194336163 6461690 complement(1089866..1090966) 1 NC_011060.1 PFAM: bacteriochlorophyll A protein; KEGG: plt:Plut_1500 bacteriochlorophyll A protein; bacteriochlorophyll A protein 1090966 6461690 Ppha_1059 Pelodictyon phaeoclathratiforme BU-1 bacteriochlorophyll A protein YP_002017957.1 1089866 R 324925 CDS YP_002017958.1 194336164 6461368 1091210..1092790 1 NC_011060.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1887 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 1092790 6461368 Ppha_1060 Pelodictyon phaeoclathratiforme BU-1 apolipoprotein N-acyltransferase YP_002017958.1 1091210 D 324925 CDS YP_002017959.1 194336165 6462453 complement(1092802..1093953) 1 NC_011060.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: cph:Cpha266_1886 sigma54 specific transcriptional regulator, Fis family; Fis family sigma-54 specific transcriptional regulator 1093953 6462453 Ppha_1061 Pelodictyon phaeoclathratiforme BU-1 Fis family sigma-54 specific transcriptional regulator YP_002017959.1 1092802 R 324925 CDS YP_002017960.1 194336166 6461011 complement(1093974..1094900) 1 NC_011060.1 PFAM: Sporulation domain protein; KEGG: plt:Plut_1497 hypothetical protein; sporulation domain-containing protein 1094900 6461011 Ppha_1062 Pelodictyon phaeoclathratiforme BU-1 sporulation domain-containing protein YP_002017960.1 1093974 R 324925 CDS YP_002017961.1 194336167 6462077 1094993..1095856 1 NC_011060.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1095856 6462077 Ppha_1063 Pelodictyon phaeoclathratiforme BU-1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002017961.1 1094993 D 324925 CDS YP_002017962.1 194336168 6462133 complement(1095997..1096302) 1 NC_011060.1 KEGG: rme:Rmet_3677 histone-like nucleoid-structuring protein H-NS; histone-like nucleoid-structuring protein H-NS 1096302 6462133 Ppha_1064 Pelodictyon phaeoclathratiforme BU-1 histone-like nucleoid-structuring protein H-NS YP_002017962.1 1095997 R 324925 CDS YP_002017963.1 194336169 6463827 complement(1096924..1097250) 1 NC_011060.1 hypothetical protein 1097250 6463827 Ppha_1065 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017963.1 1096924 R 324925 CDS YP_002017964.1 194336170 6463826 complement(1097423..1098283) 1 NC_011060.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pvi:Cvib_1320 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1098283 6463826 Ppha_1066 Pelodictyon phaeoclathratiforme BU-1 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002017964.1 1097423 R 324925 CDS YP_002017965.1 194336171 6463824 complement(1098296..1099603) 1 NC_011060.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cph:Cpha266_1882 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 1099603 6463824 Ppha_1067 Pelodictyon phaeoclathratiforme BU-1 xanthine/uracil/vitamin C permease YP_002017965.1 1098296 R 324925 CDS YP_002017966.1 194336172 6463823 1099822..1100055 1 NC_011060.1 KEGG: cau:Caur_0486 protein kinase; hypothetical protein 1100055 6463823 Ppha_1068 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017966.1 1099822 D 324925 CDS YP_002017967.1 194336173 6463822 1100203..1101753 1 NC_011060.1 PFAM: Forkhead-associated protein; KEGG: bth:BT_2774 adenylate cyclase; FHA domain-containing protein 1101753 6463822 Ppha_1069 Pelodictyon phaeoclathratiforme BU-1 FHA domain-containing protein YP_002017967.1 1100203 D 324925 CDS YP_002017968.1 194336174 6463821 1101766..1102377 1 NC_011060.1 PFAM: Forkhead-associated protein; KEGG: bth:BT_2773 hypothetical protein; FHA domain-containing protein 1102377 6463821 Ppha_1070 Pelodictyon phaeoclathratiforme BU-1 FHA domain-containing protein YP_002017968.1 1101766 D 324925 CDS YP_002017969.1 194336175 6463816 1102429..1104045 1 NC_011060.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: bth:BT_2772 protein phosphatase; protein serine/threonine phosphatase 1104045 6463816 Ppha_1071 Pelodictyon phaeoclathratiforme BU-1 protein serine/threonine phosphatase YP_002017969.1 1102429 D 324925 CDS YP_002017970.1 194336176 6463813 1104372..1104902 1 NC_011060.1 KEGG: cph:Cpha266_1383 hypothetical protein; hypothetical protein 1104902 6463813 Ppha_1073 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017970.1 1104372 D 324925 CDS YP_002017971.1 194336177 6463812 1104920..1105426 1 NC_011060.1 KEGG: cph:Cpha266_1384 transposase family protein; transposase family protein 1105426 6463812 Ppha_1074 Pelodictyon phaeoclathratiforme BU-1 transposase family protein YP_002017971.1 1104920 D 324925 CDS YP_002017972.1 194336178 6463811 1105475..1106140 1 NC_011060.1 PFAM: protein of unknown function DUF805; KEGG: mlo:mlr4844 hypothetical protein; hypothetical protein 1106140 6463811 Ppha_1075 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017972.1 1105475 D 324925 CDS YP_002017973.1 194336179 6463806 1106646..1107887 1 NC_011060.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1107887 6463806 Ppha_1076 Pelodictyon phaeoclathratiforme BU-1 RNA-directed DNA polymerase YP_002017973.1 1106646 D 324925 CDS YP_002017974.1 194336180 6463802 1108042..1109553 1 NC_011060.1 PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: bth:BT_2769 serine/threonine-protein kinase PknB; serine/threonine protein kinase 1109553 6463802 Ppha_1077 Pelodictyon phaeoclathratiforme BU-1 serine/threonine protein kinase YP_002017974.1 1108042 D 324925 CDS YP_002017975.1 194336181 6463799 1109592..1110851 1 NC_011060.1 PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bth:BT_2769 serine/threonine-protein kinase PknB; serine/threonine protein kinase 1110851 6463799 Ppha_1078 Pelodictyon phaeoclathratiforme BU-1 serine/threonine protein kinase YP_002017975.1 1109592 D 324925 CDS YP_002017976.1 194336182 6463800 1110890..1111693 1 NC_011060.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; hypothetical protein 1111693 6463800 Ppha_1079 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017976.1 1110890 D 324925 CDS YP_002017977.1 194336183 6463796 1112340..1112645 1 NC_011060.1 KEGG: pin:Ping_1761 hypothetical protein; hypothetical protein 1112645 6463796 Ppha_1080 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017977.1 1112340 D 324925 CDS YP_002017978.1 194336184 6463793 1113001..1113591 1 NC_011060.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_0700 thiolredoxin peroxidase; alkyl hydroperoxide reductase 1113591 6463793 Ppha_1082 Pelodictyon phaeoclathratiforme BU-1 alkyl hydroperoxide reductase YP_002017978.1 1113001 D 324925 CDS YP_002017979.1 194336185 6463792 complement(1113757..1115202) 1 NC_011060.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1115202 6463792 Ppha_1083 Pelodictyon phaeoclathratiforme BU-1 prolyl-tRNA synthetase YP_002017979.1 1113757 R 324925 CDS YP_002017980.1 194336186 6462742 complement(1115260..1115997) 1 NC_011060.1 KEGG: cph:Cpha266_1876 hypothetical protein; hypothetical protein 1115997 6462742 Ppha_1084 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017980.1 1115260 R 324925 CDS YP_002017981.1 194336187 6463791 1116190..1117089 1 NC_011060.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: pvi:Cvib_1315 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase 1117089 6463791 Ppha_1085 Pelodictyon phaeoclathratiforme BU-1 protein-(glutamine-N5) methyltransferase YP_002017981.1 1116190 D 324925 CDS YP_002017982.1 194336188 6461586 1117253..1118305 1 NC_011060.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: plt:Plut_1489 negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA 1118305 6461586 Ppha_1086 Pelodictyon phaeoclathratiforme BU-1 heat-inducible transcription repressor HrcA YP_002017982.1 1117253 D 324925 CDS YP_002017983.1 194336189 6461891 1118323..1118946 1 NC_011060.1 PFAM: GrpE protein; KEGG: cch:Cag_1423 molecular chaperone GrpE (heat shock protein)-like; GrpE protein HSP-70 cofactor 1118946 6461891 Ppha_1087 Pelodictyon phaeoclathratiforme BU-1 GrpE protein HSP-70 cofactor YP_002017983.1 1118323 D 324925 CDS YP_002017984.1 194336190 6461355 1119004..1120188 1 NC_011060.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1120188 6461355 Ppha_1088 Pelodictyon phaeoclathratiforme BU-1 chaperone protein DnaJ YP_002017984.1 1119004 D 324925 CDS YP_002017985.1 194336191 6461124 complement(1120278..1121507) 1 NC_011060.1 PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: cph:Cpha266_1271 malate dehydrogenase (oxaloacetate-decarboxylating); malate dehydrogenase 1121507 6461124 Ppha_1089 Pelodictyon phaeoclathratiforme BU-1 malate dehydrogenase YP_002017985.1 1120278 R 324925 CDS YP_002017986.1 194336192 6461864 complement(1121751..1122227) 1 NC_011060.1 KEGG: plt:Plut_1486 hypothetical protein; hypothetical protein 1122227 6461864 Ppha_1090 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017986.1 1121751 R 324925 CDS YP_002017987.1 194336193 6463480 complement(1122358..1123362) 1 NC_011060.1 KEGG: cch:Cag_1420 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1123362 6463480 Ppha_1091 Pelodictyon phaeoclathratiforme BU-1 glyceraldehyde-3-phosphate dehydrogenase, type I YP_002017987.1 1122358 R 324925 CDS YP_002017988.1 194336194 6463472 complement(1123475..1124956) 1 NC_011060.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_1869 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1124956 6463472 Ppha_1092 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_002017988.1 1123475 R 324925 CDS YP_002017989.1 194336195 6462817 1125010..1126320 1 NC_011060.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cch:Cag_0448 DegT/DnrJ/EryC1/StrS family protein; DegT/DnrJ/EryC1/StrS aminotransferase 1126320 6462817 Ppha_1093 Pelodictyon phaeoclathratiforme BU-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_002017989.1 1125010 D 324925 CDS YP_002017990.1 194336196 6462828 complement(1126413..1127726) 1 NC_011060.1 PFAM: major facilitator superfamily MFS_1; KEGG: cch:Cag_0889 transporter; major facilitator superfamily protein 1127726 6462828 Ppha_1094 Pelodictyon phaeoclathratiforme BU-1 major facilitator superfamily protein YP_002017990.1 1126413 R 324925 CDS YP_002017991.1 194336197 6462859 complement(1127746..1128654) 1 NC_011060.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_2528 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1128654 6462859 Ppha_1095 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002017991.1 1127746 R 324925 CDS YP_002017992.1 194336198 6463100 complement(1128686..1128943) 1 NC_011060.1 KEGG: cph:Cpha266_0092 virulence associated protein B; virulence associated protein B 1128943 6463100 Ppha_1096 Pelodictyon phaeoclathratiforme BU-1 virulence associated protein B YP_002017992.1 1128686 R 324925 CDS YP_002017993.1 194336199 6463189 complement(1128965..1129216) 1 NC_011060.1 KEGG: mar:MAE_20900 hypothetical protein; hypothetical protein 1129216 6463189 Ppha_1097 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017993.1 1128965 R 324925 CDS YP_002017994.1 194336200 6463423 complement(1129218..1129478) 1 NC_011060.1 KEGG: mar:MAE_20890 hypothetical protein; hypothetical protein 1129478 6463423 Ppha_1098 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002017994.1 1129218 R 324925 CDS YP_002017995.1 194336201 6463290 complement(1129503..1130195) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1866 ABC transporter related; ABC transporter-like protein 1130195 6463290 Ppha_1099 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002017995.1 1129503 R 324925 CDS YP_002017996.1 194336202 6463463 complement(1130199..1131455) 1 NC_011060.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1131455 proA 6463463 proA Pelodictyon phaeoclathratiforme BU-1 gamma-glutamyl phosphate reductase YP_002017996.1 1130199 R 324925 CDS YP_002017997.1 194336203 6462773 complement(1131468..1132556) 1 NC_011060.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1132556 6462773 Ppha_1101 Pelodictyon phaeoclathratiforme BU-1 gamma-glutamyl kinase YP_002017997.1 1131468 R 324925 CDS YP_002017998.1 194336204 6462777 complement(1132560..1132883) 1 NC_011060.1 PFAM: small multidrug resistance protein; KEGG: cph:Cpha266_1863 small multidrug resistance protein; small multidrug resistance protein 1132883 6462777 Ppha_1102 Pelodictyon phaeoclathratiforme BU-1 small multidrug resistance protein YP_002017998.1 1132560 R 324925 CDS YP_002017999.1 194336205 6462792 1133034..1135184 1 NC_011060.1 PFAM: UspA domain protein; sodium/hydrogen exchanger; KEGG: cph:Cpha266_1862 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1135184 6462792 Ppha_1103 Pelodictyon phaeoclathratiforme BU-1 sodium/hydrogen exchanger YP_002017999.1 1133034 D 324925 CDS YP_002018000.1 194336206 6462830 1135285..1136805 1 NC_011060.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; protein of unknown function DUF1568; KEGG: cph:Cpha266_1487 protein of unknown function DUF1568; methionine-R-sulfoxide reductase 1136805 6462830 Ppha_1104 Pelodictyon phaeoclathratiforme BU-1 methionine-R-sulfoxide reductase YP_002018000.1 1135285 D 324925 CDS YP_002018001.1 194336207 6462761 complement(1136946..1137665) 1 NC_011060.1 PFAM: Curli production assembly/transport component CsgG; KEGG: cph:Cpha266_1717 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG 1137665 6462761 Ppha_1105 Pelodictyon phaeoclathratiforme BU-1 curli production assembly/transport component CsgG YP_002018001.1 1136946 R 324925 CDS YP_002018002.1 194336208 6462801 complement(1137899..1138318) 1 NC_011060.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0513 NUDIX hydrolase; NUDIX hydrolase 1138318 6462801 Ppha_1106 Pelodictyon phaeoclathratiforme BU-1 NUDIX hydrolase YP_002018002.1 1137899 R 324925 CDS YP_002018003.1 194336209 6462840 1138538..1139773 1 NC_011060.1 KEGG: hch:HCH_04190 hypothetical protein; hypothetical protein 1139773 6462840 Ppha_1107 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018003.1 1138538 D 324925 CDS YP_002018004.1 194336210 6463048 complement(1139961..1141022) 1 NC_011060.1 PFAM: GTPase EngC; KEGG: cph:Cpha266_1597 GTPase EngC; GTPase EngC 1141022 6463048 Ppha_1108 Pelodictyon phaeoclathratiforme BU-1 GTPase EngC YP_002018004.1 1139961 R 324925 CDS YP_002018005.1 194336211 6463592 1141219..1142004 1 NC_011060.1 PFAM: penicillin-binding protein transpeptidase; KEGG: cph:Cpha266_1596 beta-lactamase; Beta-lactamase 1142004 6463592 Ppha_1109 Pelodictyon phaeoclathratiforme BU-1 Beta-lactamase YP_002018005.1 1141219 D 324925 CDS YP_002018006.1 194336212 6463356 1142141..1142425 1 NC_011060.1 KEGG: cch:Cag_1210 hypothetical protein; hypothetical protein 1142425 6463356 Ppha_1110 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018006.1 1142141 D 324925 CDS YP_002018007.1 194336213 6463305 complement(1142506..1143375) 1 NC_011060.1 PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1569 UbiA prenyltransferase; UbiA prenyltransferase 1143375 6463305 Ppha_1111 Pelodictyon phaeoclathratiforme BU-1 UbiA prenyltransferase YP_002018007.1 1142506 R 324925 CDS YP_002018008.1 194336214 6463393 complement(1143831..1144358) 1 NC_011060.1 PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: fps:FP1904 muramidase; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 1144358 6463393 Ppha_1112 Pelodictyon phaeoclathratiforme BU-1 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase YP_002018008.1 1143831 R 324925 CDS YP_002018009.1 194336215 6462709 complement(1145030..1145383) 1 NC_011060.1 KEGG: cph:Cpha266_1975 hypothetical protein; hypothetical protein 1145383 6462709 Ppha_1113 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018009.1 1145030 R 324925 CDS YP_002018010.1 194336216 6462710 1145733..1146620 1 NC_011060.1 KEGG: cph:Cpha266_1071 hypothetical protein; hypothetical protein 1146620 6462710 Ppha_1114 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018010.1 1145733 D 324925 CDS YP_002018011.1 194336217 6462695 1146625..1147092 1 NC_011060.1 KEGG: ppd:Ppro_1338 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 1147092 6462695 Ppha_1115 Pelodictyon phaeoclathratiforme BU-1 methylated-DNA--protein-cysteine methyltransferase YP_002018011.1 1146625 D 324925 CDS YP_002018012.1 194336218 6462724 1147242..1148111 1 NC_011060.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: plt:Plut_0805 AraC family transcripiotnal regulator; AraC family transcripiotnal regulator 1148111 6462724 Ppha_1116 Pelodictyon phaeoclathratiforme BU-1 AraC family transcripiotnal regulator YP_002018012.1 1147242 D 324925 CDS YP_002018013.1 194336219 6462804 1148140..1149270 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: cph:Cpha266_1564 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1149270 6462804 Ppha_1117 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002018013.1 1148140 D 324925 CDS YP_002018014.1 194336220 6463005 1149490..1152582 1 NC_011060.1 PFAM: acriflavin resistance protein; KEGG: cte:CT1287 multidrug resistance protein, AcrB/AcrD family; acriflavin resistance protein 1152582 6463005 Ppha_1118 Pelodictyon phaeoclathratiforme BU-1 acriflavin resistance protein YP_002018014.1 1149490 D 324925 CDS YP_002018015.1 194336221 6463284 1152611..1154032 1 NC_011060.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: plt:Plut_0808 RND efflux system, outer membrane lipoprotein, NodT; NodT family RND efflux system outer membrane lipoprotein 1154032 6463284 Ppha_1119 Pelodictyon phaeoclathratiforme BU-1 NodT family RND efflux system outer membrane lipoprotein YP_002018015.1 1152611 D 324925 CDS YP_002018016.1 194336222 6463321 1154089..1154934 1 NC_011060.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pvi:Cvib_0735 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1154934 6463321 Ppha_1120 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002018016.1 1154089 D 324925 CDS YP_002018017.1 194336223 6462683 1155112..1157094 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_00778410 SLEI family protein Pfam: TPR_2 TPR_1 Sel1 Bin3 DUF627 TPR_3 PUB HHA PPR Mad3_BUB1_I VAR1 PLU-1 Mg296 FAT MIT PROSITE: TPR TPR_REGION; hypothetical protein 1157094 6462683 Ppha_1121 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018017.1 1155112 D 324925 CDS YP_002018018.1 194336224 6462688 1157260..1157940 1 NC_011060.1 PFAM: protein of unknown function DUF159; KEGG: cph:Cpha266_1054 protein of unknown function DUF159; hypothetical protein 1157940 6462688 Ppha_1122 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018018.1 1157260 D 324925 CDS YP_002018019.1 194336225 6462682 1158045..1161554 1 NC_011060.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_0633 helicase domain protein; helicase domain-containing protein 1161554 6462682 Ppha_1123 Pelodictyon phaeoclathratiforme BU-1 helicase domain-containing protein YP_002018019.1 1158045 D 324925 CDS YP_002018020.1 194336226 6462741 1161568..1162752 1 NC_011060.1 PFAM: AAA-4 family protein; KEGG: cch:Cag_1221 transcriptional regulator; transcriptional regulator 1162752 6462741 Ppha_1124 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002018020.1 1161568 D 324925 CDS YP_002018021.1 194336227 6463501 1162749..1163732 1 NC_011060.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aeh:Mlg_2299 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1163732 6463501 Ppha_1125 Pelodictyon phaeoclathratiforme BU-1 Cobyrinic acid ac-diamide synthase YP_002018021.1 1162749 D 324925 CDS YP_002018022.1 194336228 6463236 1164204..1167398 1 NC_011060.1 PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: cte:CT0906 DNA-dependent ATPase, SNF2 family protein; helicase domain-containing protein 1167398 6463236 Ppha_1126 Pelodictyon phaeoclathratiforme BU-1 helicase domain-containing protein YP_002018022.1 1164204 D 324925 CDS YP_002018023.1 194336229 6463278 1167395..1168153 1 NC_011060.1 KEGG: cte:CT0907 hypothetical protein; hypothetical protein 1168153 6463278 Ppha_1127 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018023.1 1167395 D 324925 CDS YP_002018024.1 194336230 6462643 1168150..1170081 1 NC_011060.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bpt:Bpet4236 type III restriction system methylase; adenine-specific DNA-methyltransferase 1170081 6462643 Ppha_1128 Pelodictyon phaeoclathratiforme BU-1 adenine-specific DNA-methyltransferase YP_002018024.1 1168150 D 324925 CDS YP_002018025.1 194336231 6462649 1170084..1171307 1 NC_011060.1 PFAM: protein of unknown function DUF1016; KEGG: amr:AM1_2231 hypothetical protein; hypothetical protein 1171307 6462649 Ppha_1129 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018025.1 1170084 D 324925 CDS YP_002018026.1 194336232 6462667 1171304..1174279 1 NC_011060.1 KEGG: cte:CT0911 type III restriction system endonuclease; type III restriction system endonuclease 1174279 6462667 Ppha_1130 Pelodictyon phaeoclathratiforme BU-1 type III restriction system endonuclease YP_002018026.1 1171304 D 324925 CDS YP_002018027.1 194336233 6463130 1175605..1176726 1 NC_011060.1 hypothetical protein 1176726 6463130 Ppha_1132 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018027.1 1175605 D 324925 CDS YP_002018028.1 194336234 6463536 complement(1178982..1179581) 1 NC_011060.1 KEGG: eba:ebA5228 hypothetical protein; hypothetical protein 1179581 6463536 Ppha_1134 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018028.1 1178982 R 324925 CDS YP_002018029.1 194336235 6463684 complement(1179578..1180921) 1 NC_011060.1 KEGG: eba:ebA5226 hypothetical protein; hypothetical protein 1180921 6463684 Ppha_1135 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018029.1 1179578 R 324925 CDS YP_002018030.1 194336236 6463167 1182682..1182930 1 NC_011060.1 hypothetical protein 1182930 6463167 Ppha_1137 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018030.1 1182682 D 324925 CDS YP_002018031.1 194336237 6461513 1182930..1184276 1 NC_011060.1 hypothetical protein 1184276 6461513 Ppha_1138 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018031.1 1182930 D 324925 CDS YP_002018032.1 194336238 6463171 complement(1190554..1192767) 1 NC_011060.1 PFAM: protein of unknown function DUF255; KEGG: cph:Cpha266_1460 protein of unknown function DUF255; hypothetical protein 1192767 6463171 Ppha_1140 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018032.1 1190554 R 324925 CDS YP_002018033.1 194336239 6462427 1192859..1193875 1 NC_011060.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1193875 6462427 Ppha_1141 Pelodictyon phaeoclathratiforme BU-1 bifunctional methionine sulfoxide reductase B/A protein YP_002018033.1 1192859 D 324925 CDS YP_002018034.1 194336240 6463611 complement(1194039..1194716) 1 NC_011060.1 alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols; peroxiredoxin 1194716 6463611 Ppha_1142 Pelodictyon phaeoclathratiforme BU-1 peroxiredoxin YP_002018034.1 1194039 R 324925 CDS YP_002018035.1 194336241 6463172 complement(1194985..1195530) 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: pvi:Cvib_0743 conserved hypothetical protein 730; hypothetical protein 1195530 6463172 Ppha_1143 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018035.1 1194985 R 324925 CDS YP_002018036.1 194336242 6463237 complement(1195538..1196167) 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cch:Cag_1106 glycosyl transferase; family 2 glycosyl transferase 1196167 6463237 Ppha_1144 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002018036.1 1195538 R 324925 CDS YP_002018037.1 194336243 6463219 complement(1196164..1197165) 1 NC_011060.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1449 bacteriochlorophyll/chlorophyll a synthase; bacteriochlorophyll/chlorophyll a synthase 1197165 6463219 Ppha_1145 Pelodictyon phaeoclathratiforme BU-1 bacteriochlorophyll/chlorophyll a synthase YP_002018037.1 1196164 R 324925 CDS YP_002018038.1 194336244 6462305 1197392..1197856 1 NC_011060.1 KEGG: cph:Cpha266_1423 hypothetical protein; hypothetical protein 1197856 6462305 Ppha_1146 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018038.1 1197392 D 324925 CDS YP_002018039.1 194336245 6463116 1197901..1198527 1 NC_011060.1 PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cte:CT1267 amino acid efflux protein; lysine exporter protein LysE/YggA 1198527 6463116 Ppha_1147 Pelodictyon phaeoclathratiforme BU-1 lysine exporter protein LysE/YggA YP_002018039.1 1197901 D 324925 CDS YP_002018040.1 194336246 6463093 1198638..1199810 1 NC_011060.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cch:Cag_1081 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1199810 6463093 Ppha_1148 Pelodictyon phaeoclathratiforme BU-1 serine-type D-Ala-D-Ala carboxypeptidase YP_002018040.1 1198638 D 324925 CDS YP_002018041.1 194336247 6463132 1199817..1200152 1 NC_011060.1 PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: cte:CT1263 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 1200152 6463132 Ppha_1149 Pelodictyon phaeoclathratiforme BU-1 stress responsive alpha-beta barrel domain-containing protein YP_002018041.1 1199817 D 324925 CDS YP_002018042.1 194336248 6463030 complement(1200237..1200425) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1216 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin 1200425 6463030 Ppha_1150 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002018042.1 1200237 R 324925 CDS YP_002018043.1 194336249 6463064 complement(1200559..1200750) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1215 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin 1200750 6463064 Ppha_1151 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002018043.1 1200559 R 324925 CDS YP_002018044.1 194336250 6463058 complement(1200881..1201846) 1 NC_011060.1 PFAM: PhoH family protein; KEGG: cch:Cag_1083 PhoH family protein; PhoH family protein 1201846 6463058 Ppha_1152 Pelodictyon phaeoclathratiforme BU-1 PhoH family protein YP_002018044.1 1200881 R 324925 CDS YP_002018045.1 194336251 6462257 complement(1201859..1202860) 1 NC_011060.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cch:Cag_1084 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 1202860 6462257 Ppha_1153 Pelodictyon phaeoclathratiforme BU-1 ADP-L-glycero-D-manno-heptose-6-epimerase YP_002018045.1 1201859 R 324925 CDS YP_002018046.1 194336252 6463534 complement(1202944..1205721) 1 NC_011060.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1205721 6463534 Ppha_1154 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor hybrid histidine kinase YP_002018046.1 1202944 R 324925 CDS YP_002018047.1 194336253 6462986 complement(1206089..1206541) 1 NC_011060.1 KEGG: plt:Plut_1207 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 subunit 1206541 6462986 Ppha_1155 Pelodictyon phaeoclathratiforme BU-1 ECF subfamily RNA polymerase sigma-24 subunit YP_002018047.1 1206089 R 324925 CDS YP_002018048.1 194336254 6462970 1206717..1207784 1 NC_011060.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: pvi:Cvib_0754 histidinol phosphate aminotransferase; histidinol-phosphate aminotransferase 1207784 6462970 Ppha_1156 Pelodictyon phaeoclathratiforme BU-1 histidinol-phosphate aminotransferase YP_002018048.1 1206717 D 324925 CDS YP_002018049.1 194336255 6463018 1207787..1208329 1 NC_011060.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cph:Cpha266_1411 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1208329 6463018 Ppha_1157 Pelodictyon phaeoclathratiforme BU-1 tRNA/rRNA methyltransferase SpoU YP_002018049.1 1207787 D 324925 CDS YP_002018050.1 194336256 6462995 1208393..1209223 1 NC_011060.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_1410 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1209223 6462995 Ppha_1158 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002018050.1 1208393 D 324925 CDS YP_002018051.1 194336257 6463564 complement(1209220..1209792) 1 NC_011060.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1209792 6463564 Ppha_1159 Pelodictyon phaeoclathratiforme BU-1 peptidyl-tRNA hydrolase YP_002018051.1 1209220 R 324925 CDS YP_002018052.1 194336258 6463555 1210099..1212579 1 NC_011060.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1212579 hppA 6463555 hppA Pelodictyon phaeoclathratiforme BU-1 membrane-bound proton-translocating pyrophosphatase YP_002018052.1 1210099 D 324925 CDS YP_002018053.1 194336259 6463604 complement(1212660..1213202) 1 NC_011060.1 PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1984 pentapeptide repeat protein; pentapeptide repeat-containing protein 1213202 6463604 Ppha_1161 Pelodictyon phaeoclathratiforme BU-1 pentapeptide repeat-containing protein YP_002018053.1 1212660 R 324925 CDS YP_002018054.1 194336260 6462902 1213561..1214766 1 NC_011060.1 KEGG: cre:CHLREDRAFT_190319 hypothetical protein Pfam: Dioxygenase_C PROSITE: ALA_RICH; hypothetical protein 1214766 6462902 Ppha_1162 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018054.1 1213561 D 324925 CDS YP_002018055.1 194336261 6462553 1214960..1215982 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_1059 hypothetical protein; NmrA family protein 1215982 6462553 Ppha_1163 Pelodictyon phaeoclathratiforme BU-1 NmrA family protein YP_002018055.1 1214960 D 324925 CDS YP_002018056.1 194336262 6462903 1216120..1216911 1 NC_011060.1 PFAM: band 7 protein; KEGG: cch:Cag_1233 band 7 protein; hypothetical protein 1216911 6462903 Ppha_1164 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018056.1 1216120 D 324925 CDS YP_002018057.1 194336263 6462923 1216924..1217382 1 NC_011060.1 PFAM: UspA domain protein; KEGG: pvi:Cvib_1041 UspA domain protein; UspA domain-containing protein 1217382 6462923 Ppha_1165 Pelodictyon phaeoclathratiforme BU-1 UspA domain-containing protein YP_002018057.1 1216924 D 324925 CDS YP_002018058.1 194336264 6463015 complement(1217366..1218379) 1 NC_011060.1 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 1218379 6463015 Ppha_1166 Pelodictyon phaeoclathratiforme BU-1 arginine/ornithine transport system ATPase YP_002018058.1 1217366 R 324925 CDS YP_002018059.1 194336265 6463525 complement(1218543..1220681) 1 NC_011060.1 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1220681 6463525 Ppha_1167 Pelodictyon phaeoclathratiforme BU-1 methylmalonyl-CoA mutase YP_002018059.1 1218543 R 324925 CDS YP_002018060.1 194336266 6463477 complement(1220678..1222453) 1 NC_011060.1 PFAM: methylmalonyl-CoA mutase; KEGG: cph:Cpha266_1165 methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 1222453 6463477 Ppha_1168 Pelodictyon phaeoclathratiforme BU-1 methylmalonyl-CoA mutase YP_002018060.1 1220678 R 324925 CDS YP_002018061.1 194336267 6462852 complement(1222450..1224252) 1 NC_011060.1 KEGG: cph:Cpha266_1166 acetyl-CoA carboxylase alpha subunit-like; acetyl-CoA carboxylase subunit alpha-like protein 1224252 6462852 Ppha_1169 Pelodictyon phaeoclathratiforme BU-1 acetyl-CoA carboxylase subunit alpha-like protein YP_002018061.1 1222450 R 324925 CDS YP_002018062.1 194336268 6462823 complement(1224281..1224688) 1 NC_011060.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_1167 methylmalonyl-CoA epimerase; methylmalonyl-CoA epimerase 1224688 6462823 Ppha_1170 Pelodictyon phaeoclathratiforme BU-1 methylmalonyl-CoA epimerase YP_002018062.1 1224281 R 324925 CDS YP_002018063.1 194336269 6462853 complement(1224685..1226607) 1 NC_011060.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cch:Cag_1125 propionate--CoA ligase; AMP-dependent synthetase and ligase 1226607 6462853 Ppha_1171 Pelodictyon phaeoclathratiforme BU-1 AMP-dependent synthetase and ligase YP_002018063.1 1224685 R 324925 CDS YP_002018064.1 194336270 6463631 complement(1226778..1227566) 1 NC_011060.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1227566 ksgA 6463631 ksgA Pelodictyon phaeoclathratiforme BU-1 dimethyladenosine transferase YP_002018064.1 1226778 R 324925 CDS YP_002018065.1 194336271 6462470 1227638..1228621 1 NC_011060.1 PFAM: transketolase; transketolase; KEGG: cch:Cag_1192 transketolase-like; transketolase 1228621 6462470 Ppha_1173 Pelodictyon phaeoclathratiforme BU-1 transketolase YP_002018065.1 1227638 D 324925 CDS YP_002018066.1 194336272 6462391 1228661..1228996 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1171 conserved hypothetical protein 103; hypothetical protein 1228996 6462391 Ppha_1174 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018066.1 1228661 D 324925 CDS YP_002018067.1 194336273 6463485 1229003..1229617 1 NC_011060.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1229617 recR 6463485 recR Pelodictyon phaeoclathratiforme BU-1 recombination protein RecR YP_002018067.1 1229003 D 324925 CDS YP_002018068.1 194336274 6463563 1229649..1231037 1 NC_011060.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase; Carotene 7,8-desaturase 1231037 6463563 Ppha_1176 Pelodictyon phaeoclathratiforme BU-1 Carotene 7,8-desaturase YP_002018068.1 1229649 D 324925 CDS YP_002018069.1 194336275 6460889 complement(1231177..1233018) 1 NC_011060.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: GAF domain protein; KEGG: plt:Plut_1394 GAF sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase 1233018 6460889 Ppha_1177 Pelodictyon phaeoclathratiforme BU-1 GAF sensor signal transduction histidine kinase YP_002018069.1 1231177 R 324925 CDS YP_002018070.1 194336276 6462728 1233379..1234050 1 NC_011060.1 PFAM: NADPH-dependent FMN reductase; KEGG: cph:Cpha266_1959 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1234050 6462728 Ppha_1178 Pelodictyon phaeoclathratiforme BU-1 NADPH-dependent FMN reductase YP_002018070.1 1233379 D 324925 CDS YP_002018071.1 194336277 6462496 1234634..1234894 1 NC_011060.1 KEGG: ppd:Ppro_1116 transcriptional regulator, CopG family; CopG family transcriptional regulator 1234894 6462496 Ppha_1179 Pelodictyon phaeoclathratiforme BU-1 CopG family transcriptional regulator YP_002018071.1 1234634 D 324925 CDS YP_002018072.1 194336278 6462424 1234875..1235150 1 NC_011060.1 PFAM: plasmid stabilization system; KEGG: ppd:Ppro_1115 addiction module toxin, RelE/StbE family; plasmid stabilization system 1235150 6462424 Ppha_1180 Pelodictyon phaeoclathratiforme BU-1 plasmid stabilization system YP_002018072.1 1234875 D 324925 CDS YP_002018073.1 194336279 6462810 complement(1235551..1236813) 1 NC_011060.1 KEGG: fjo:Fjoh_3045 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 1236813 6462810 Ppha_1183 Pelodictyon phaeoclathratiforme BU-1 natural resistance-associated macrophage protein YP_002018073.1 1235551 R 324925 CDS YP_002018074.1 194336280 6462564 1236964..1237263 1 NC_011060.1 KEGG: sat:SYN_02218 cation transport ATPase; hypothetical protein 1237263 6462564 Ppha_1184 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018074.1 1236964 D 324925 CDS YP_002018075.1 194336281 6462543 1237595..1238521 1 NC_011060.1 PFAM: Mg2 transporter protein CorA family protein; KEGG: fjo:Fjoh_0242 Mg2+ transporter protein, CorA family protein; Mg2 transporter protein CorA family protein 1238521 6462543 Ppha_1185 Pelodictyon phaeoclathratiforme BU-1 Mg2 transporter protein CorA family protein YP_002018075.1 1237595 D 324925 CDS YP_002018076.1 194336282 6463571 complement(1238518..1239546) 1 NC_011060.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cph:Cpha266_1021 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1239546 6463571 Ppha_1186 Pelodictyon phaeoclathratiforme BU-1 endonuclease/exonuclease/phosphatase YP_002018076.1 1238518 R 324925 CDS YP_002018077.1 194336283 6462370 1239654..1240055 1 NC_011060.1 KEGG: cph:Cpha266_1020 hypothetical protein; hypothetical protein 1240055 6462370 Ppha_1187 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018077.1 1239654 D 324925 CDS YP_002018078.1 194336284 6462567 1240131..1240841 1 NC_011060.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1240841 6462567 Ppha_1188 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_002018078.1 1240131 D 324925 CDS YP_002018079.1 194336285 6462558 1240871..1241515 1 NC_011060.1 PFAM: hypothetical protein; KEGG: cph:Cpha266_1018 DedA family protein; hypothetical protein 1241515 6462558 Ppha_1189 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018079.1 1240871 D 324925 CDS YP_002018080.1 194336286 6463682 1241593..1242504 1 NC_011060.1 PFAM: transketolase; KEGG: cph:Cpha266_1017 transketolase subunit A; transketolase 1242504 6463682 Ppha_1190 Pelodictyon phaeoclathratiforme BU-1 transketolase YP_002018080.1 1241593 D 324925 CDS YP_002018081.1 194336287 6463063 1242519..1243055 1 NC_011060.1 PFAM: Protein of unknown function methylase KEGG: cph:Cpha266_1016 conserved hypothetical protein 95; hypothetical protein 1243055 6463063 Ppha_1191 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018081.1 1242519 D 324925 CDS YP_002018082.1 194336288 6463062 1243069..1243560 1 NC_011060.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1243560 coaD 6463062 coaD Pelodictyon phaeoclathratiforme BU-1 phosphopantetheine adenylyltransferase YP_002018082.1 1243069 D 324925 CDS YP_002018083.1 194336289 6462983 1243586..1244794 1 NC_011060.1 PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: cph:Cpha266_1014 aminotransferase; class I and II aminotransferase 1244794 6462983 Ppha_1193 Pelodictyon phaeoclathratiforme BU-1 class I and II aminotransferase YP_002018083.1 1243586 D 324925 CDS YP_002018084.1 194336290 6462531 1244802..1245575 1 NC_011060.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cph:Cpha266_1013 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1245575 6462531 Ppha_1194 Pelodictyon phaeoclathratiforme BU-1 phospholipid/glycerol acyltransferase YP_002018084.1 1244802 D 324925 CDS YP_002018085.1 194336291 6462539 1245765..1246742 1 NC_011060.1 PFAM: PSP1 domain protein; KEGG: cph:Cpha266_1012 PSP1 domain protein; PSP1 domain-containing protein 1246742 6462539 Ppha_1195 Pelodictyon phaeoclathratiforme BU-1 PSP1 domain-containing protein YP_002018085.1 1245765 D 324925 CDS YP_002018086.1 194336292 6463090 1247316..1249418 1 NC_011060.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1249418 metG 6463090 metG Pelodictyon phaeoclathratiforme BU-1 methionyl-tRNA synthetase YP_002018086.1 1247316 D 324925 CDS YP_002018087.1 194336293 6463568 1249597..1250850 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cch:Cag_1396 hypothetical protein; hypothetical protein 1250850 6463568 Ppha_1198 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018087.1 1249597 D 324925 CDS YP_002018088.1 194336294 6462490 complement(1250857..1251975) 1 NC_011060.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase 1251975 6462490 Ppha_1199 Pelodictyon phaeoclathratiforme BU-1 cyclopropane-fatty-acyl-phospholipid synthase YP_002018088.1 1250857 R 324925 CDS YP_002018089.1 194336295 6463584 complement(1252377..1253015) 1 NC_011060.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor; anti-sigma-factor antagonist 1253015 6463584 Ppha_1200 Pelodictyon phaeoclathratiforme BU-1 anti-sigma-factor antagonist YP_002018089.1 1252377 R 324925 CDS YP_002018090.1 194336296 6463632 complement(1253230..1254186) 1 NC_011060.1 KEGG: cte:CT0973 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1254186 6463632 Ppha_1201 Pelodictyon phaeoclathratiforme BU-1 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002018090.1 1253230 R 324925 CDS YP_002018091.1 194336297 6463577 1254857..1258237 1 NC_011060.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1258237 6463577 Ppha_1202 Pelodictyon phaeoclathratiforme BU-1 multi-sensor hybrid histidine kinase YP_002018091.1 1254857 D 324925 CDS YP_002018092.1 194336298 6462740 complement(1258261..1258599) 1 NC_011060.1 PFAM: membrane protein of unknown function; KEGG: cph:Cpha266_0995 membrane protein of unknown function; hypothetical protein 1258599 6462740 Ppha_1203 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018092.1 1258261 R 324925 CDS YP_002018093.1 194336299 6462968 complement(1258698..1260071) 1 NC_011060.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1260071 6462968 Ppha_1204 Pelodictyon phaeoclathratiforme BU-1 DNA repair protein RadA YP_002018093.1 1258698 R 324925 CDS YP_002018094.1 194336300 6463260 complement(1260078..1260965) 1 NC_011060.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1260965 6463260 Ppha_1205 Pelodictyon phaeoclathratiforme BU-1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002018094.1 1260078 R 324925 CDS YP_002018095.1 194336301 6462674 1261164..1261742 1 NC_011060.1 KEGG: cph:Cpha266_1548 hypothetical protein; hypothetical protein 1261742 6462674 Ppha_1206 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018095.1 1261164 D 324925 CDS YP_002018096.1 194336302 6463367 1261735..1263183 1 NC_011060.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cch:Cag_0781 sigma-54 factor; RNA polymerase sigma 54 subunit RpoN 1263183 6463367 Ppha_1207 Pelodictyon phaeoclathratiforme BU-1 RNA polymerase sigma 54 subunit RpoN YP_002018096.1 1261735 D 324925 CDS YP_002018097.1 194336303 6463545 1263187..1263735 1 NC_011060.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1263735 6463545 Ppha_1208 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent protease peptidase subunit YP_002018097.1 1263187 D 324925 CDS YP_002018098.1 194336304 6463531 1263795..1265285 1 NC_011060.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1265285 hslU 6463531 hslU Pelodictyon phaeoclathratiforme BU-1 ATP-dependent protease ATP-binding subunit HslU YP_002018098.1 1263795 D 324925 CDS YP_002018099.1 194336305 6463593 1265343..1265798 1 NC_011060.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1265798 6463593 Ppha_1210 Pelodictyon phaeoclathratiforme BU-1 3-dehydroquinate dehydratase YP_002018099.1 1265343 D 324925 CDS YP_002018100.1 194336306 6462879 complement(1265781..1266254) 1 NC_011060.1 PFAM: DoxX family protein; KEGG: cph:Cpha266_1543 DoxX family protein; DoxX family protein 1266254 6462879 Ppha_1211 Pelodictyon phaeoclathratiforme BU-1 DoxX family protein YP_002018100.1 1265781 R 324925 CDS YP_002018101.1 194336307 6463352 complement(1266266..1267570) 1 NC_011060.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1267570 6463352 Ppha_1212 Pelodictyon phaeoclathratiforme BU-1 adenylosuccinate lyase YP_002018101.1 1266266 R 324925 CDS YP_002018102.1 194336308 6463092 complement(1267659..1269098) 1 NC_011060.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cch:Cag_0722 HDIG; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 1269098 6463092 Ppha_1213 Pelodictyon phaeoclathratiforme BU-1 polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_002018102.1 1267659 R 324925 CDS YP_002018103.1 194336309 6463114 complement(1269124..1270158) 1 NC_011060.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cch:Cag_0723 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein 1270158 6463114 Ppha_1214 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase domain-containing protein YP_002018103.1 1269124 R 324925 CDS YP_002018104.1 194336310 6463496 complement(1270201..1271472) 1 NC_011060.1 PFAM: major facilitator superfamily MFS_1; KEGG: plt:Plut_1149 drug resistance protein; major facilitator superfamily protein 1271472 6463496 Ppha_1215 Pelodictyon phaeoclathratiforme BU-1 major facilitator superfamily protein YP_002018104.1 1270201 R 324925 CDS YP_002018105.1 194336311 6463517 complement(1271552..1272490) 1 NC_011060.1 PFAM: periplasmic binding protein; KEGG: plt:Plut_1148 ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein 1272490 6463517 Ppha_1216 Pelodictyon phaeoclathratiforme BU-1 periplasmic binding protein YP_002018105.1 1271552 R 324925 CDS YP_002018106.1 194336312 6463510 1272691..1275819 1 NC_011060.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_3523 protein of unknown function DUF450; hypothetical protein 1275819 6463510 Ppha_1217 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018106.1 1272691 D 324925 CDS YP_002018107.1 194336313 6462154 1275813..1277447 1 NC_011060.1 PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase; N-6 DNA methylase 1277447 6462154 Ppha_1218 Pelodictyon phaeoclathratiforme BU-1 N-6 DNA methylase YP_002018107.1 1275813 D 324925 CDS YP_002018108.1 194336314 6463540 1277440..1278678 1 NC_011060.1 KEGG: spc:Sputcn32_3525 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain 1278678 6463540 Ppha_1219 Pelodictyon phaeoclathratiforme BU-1 restriction modification system DNA specificity domain YP_002018108.1 1277440 D 324925 CDS YP_002018109.1 194336315 6463301 1278990..1280315 1 NC_011060.1 PFAM: pentapeptide repeat protein; SMART: TIR protein; KEGG: cte:CT1045 pentapeptide repeat family protein; pentapeptide repeat-containing protein 1280315 6463301 Ppha_1220 Pelodictyon phaeoclathratiforme BU-1 pentapeptide repeat-containing protein YP_002018109.1 1278990 D 324925 CDS YP_002018110.1 194336316 6461977 1280717..1281466 1 NC_011060.1 hypothetical protein 1281466 6461977 Ppha_1221 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018110.1 1280717 D 324925 CDS YP_002018111.1 194336317 6463375 1281532..1282527 1 NC_011060.1 PFAM: pentapeptide repeat protein; SMART: TIR protein; KEGG: cte:CT1045 pentapeptide repeat family protein; pentapeptide repeat-containing protein 1282527 6463375 Ppha_1222 Pelodictyon phaeoclathratiforme BU-1 pentapeptide repeat-containing protein YP_002018111.1 1281532 D 324925 CDS YP_002018112.1 194336318 6462880 complement(1282536..1282994) 1 NC_011060.1 KEGG: fjo:Fjoh_3614 hypothetical protein; hypothetical protein 1282994 6462880 Ppha_1223 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018112.1 1282536 R 324925 CDS YP_002018113.1 194336319 6463469 complement(1282991..1283542) 1 NC_011060.1 KEGG: fjo:Fjoh_3615 hypothetical protein; hypothetical protein 1283542 6463469 Ppha_1224 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018113.1 1282991 R 324925 CDS YP_002018114.1 194336320 6463464 1283864..1284100 1 NC_011060.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: cch:Cag_1311 hypothetical protein; DNA-binding domain-containing protein 1284100 6463464 Ppha_1225 Pelodictyon phaeoclathratiforme BU-1 DNA-binding domain-containing protein YP_002018114.1 1283864 D 324925 CDS YP_002018115.1 194336321 6462120 1284148..1284846 1 NC_011060.1 PFAM: protein of unknown function DUF1016; KEGG: ava:Ava_4169 protein of unknown function DUF1016; hypothetical protein 1284846 6462120 Ppha_1226 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018115.1 1284148 D 324925 CDS YP_002018116.1 194336322 6463471 complement(1284843..1285400) 1 NC_011060.1 PFAM: NUDIX hydrolase; KEGG: cch:Cag_0727 NUDIX/MutT family protein; NUDIX hydrolase 1285400 6463471 Ppha_1227 Pelodictyon phaeoclathratiforme BU-1 NUDIX hydrolase YP_002018116.1 1284843 R 324925 CDS YP_002018117.1 194336323 6462048 complement(1285429..1286322) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 hypothetical protein; hypothetical protein 1286322 6462048 Ppha_1228 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018117.1 1285429 R 324925 CDS YP_002018118.1 194336324 6463372 1286524..1286988 1 NC_011060.1 PFAM: cyclase/dehydrase; KEGG: cte:CT0933 hypothetical protein; cyclase/dehydrase 1286988 6463372 Ppha_1229 Pelodictyon phaeoclathratiforme BU-1 cyclase/dehydrase YP_002018118.1 1286524 D 324925 CDS YP_002018119.1 194336325 6463397 1287015..1288709 1 NC_011060.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: pvi:Cvib_0805 Na+/Pi-cotransporter; Na/Pi-cotransporter II-like protein 1288709 6463397 Ppha_1230 Pelodictyon phaeoclathratiforme BU-1 Na/Pi-cotransporter II-like protein YP_002018119.1 1287015 D 324925 CDS YP_002018120.1 194336326 6463396 1288862..1290217 1 NC_011060.1 KEGG: cph:Cpha266_2262 hypothetical protein; hypothetical protein 1290217 6463396 Ppha_1231 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018120.1 1288862 D 324925 CDS YP_002018121.1 194336327 6463460 1290240..1291859 1 NC_011060.1 KEGG: cph:Cpha266_2261 DnaK like protein; DnaK-like protein 1291859 6463460 Ppha_1232 Pelodictyon phaeoclathratiforme BU-1 DnaK-like protein YP_002018121.1 1290240 D 324925 CDS YP_002018122.1 194336328 6463411 1291887..1293419 1 NC_011060.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2260 AAA ATPase, central domain protein; ATPase AAA 1293419 6463411 Ppha_1233 Pelodictyon phaeoclathratiforme BU-1 ATPase AAA YP_002018122.1 1291887 D 324925 CDS YP_002018123.1 194336329 6463493 1293442..1294239 1 NC_011060.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_2259 protein of unknown function DUF323; hypothetical protein 1294239 6463493 Ppha_1234 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018123.1 1293442 D 324925 CDS YP_002018124.1 194336330 6463309 1294693..1295271 1 NC_011060.1 hypothetical protein 1295271 6463309 Ppha_1236 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018124.1 1294693 D 324925 CDS YP_002018125.1 194336331 6463302 1295410..1295520 1 NC_011060.1 hypothetical protein 1295520 6463302 Ppha_1237 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018125.1 1295410 D 324925 CDS YP_002018126.1 194336332 6462321 1295810..1296397 1 NC_011060.1 hypothetical protein 1296397 6462321 Ppha_1238 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018126.1 1295810 D 324925 CDS YP_002018127.1 194336333 6463307 1296591..1297415 1 NC_011060.1 hypothetical protein 1297415 6463307 Ppha_1239 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018127.1 1296591 D 324925 CDS YP_002018128.1 194336334 6463247 1297437..1297697 1 NC_011060.1 hypothetical protein 1297697 6463247 Ppha_1240 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018128.1 1297437 D 324925 CDS YP_002018129.1 194336335 6463789 1298014..1302114 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3004 hypothetical protein protein; hypothetical protein 1302114 6463789 Ppha_1241 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018129.1 1298014 D 324925 CDS YP_002018130.1 194336336 6463785 1302220..1302474 1 NC_011060.1 KEGG: cph:Cpha266_2190 hypothetical protein; hypothetical protein 1302474 6463785 Ppha_1242 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018130.1 1302220 D 324925 CDS YP_002018131.1 194336337 6463784 1302471..1303532 1 NC_011060.1 KEGG: cph:Cpha266_2189 hypothetical protein; hypothetical protein 1303532 6463784 Ppha_1243 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018131.1 1302471 D 324925 CDS YP_002018132.1 194336338 6463782 1303762..1304847 1 NC_011060.1 PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pvi:Cvib_0620 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1304847 6463782 Ppha_1244 Pelodictyon phaeoclathratiforme BU-1 transposase IS204/IS1001/IS1096/IS1165 family protein YP_002018132.1 1303762 D 324925 CDS YP_002018133.1 194336339 6463781 1305353..1306594 1 NC_011060.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1306594 6463781 Ppha_1245 Pelodictyon phaeoclathratiforme BU-1 RNA-directed DNA polymerase YP_002018133.1 1305353 D 324925 CDS YP_002018134.1 194336340 6463773 1307021..1307902 1 NC_011060.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: hsm:HSM_1618 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 1307902 6463773 Ppha_1247 Pelodictyon phaeoclathratiforme BU-1 filamentation induced by cAMP protein fic YP_002018134.1 1307021 D 324925 CDS YP_002018135.1 194336341 6463772 complement(1308125..1309135) 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 1309135 6463772 Ppha_1248 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018135.1 1308125 R 324925 CDS YP_002018136.1 194336342 6463766 1311548..1312534 1 NC_011060.1 KEGG: hwa:HQ1527A methylglyoxal synthase; Methylglyoxal synthase-like protein 1312534 6463766 Ppha_1252 Pelodictyon phaeoclathratiforme BU-1 Methylglyoxal synthase-like protein YP_002018136.1 1311548 D 324925 CDS YP_002018137.1 194336343 6463764 1312949..1315831 1 NC_011060.1 PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat; WD-40 repeat-containing protein 1315831 6463764 Ppha_1253 Pelodictyon phaeoclathratiforme BU-1 WD-40 repeat-containing protein YP_002018137.1 1312949 D 324925 CDS YP_002018138.1 194336344 6463760 1316711..1316932 1 NC_011060.1 KEGG: cph:Cpha266_2190 hypothetical protein; hypothetical protein 1316932 6463760 Ppha_1255 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018138.1 1316711 D 324925 CDS YP_002018139.1 194336345 6463756 complement(1317695..1318669) 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 1318669 6463756 Ppha_1257 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018139.1 1317695 R 324925 CDS YP_002018140.1 194336346 6463755 1319085..1319732 1 NC_011060.1 PFAM: protein of unknown function DUF477; KEGG: tde:TDE2528 hypothetical protein; hypothetical protein 1319732 6463755 Ppha_1258 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018140.1 1319085 D 324925 CDS YP_002018141.1 194336347 6463754 1319729..1320676 1 NC_011060.1 PFAM: protein of unknown function DUF477; KEGG: rpa:RPA1574 DUF477; hypothetical protein 1320676 6463754 Ppha_1259 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018141.1 1319729 D 324925 CDS YP_002018142.1 194336348 6463753 complement(1320753..1321556) 1 NC_011060.1 KEGG: cte:CT1305 hypothetical protein; hypothetical protein 1321556 6463753 Ppha_1260 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018142.1 1320753 R 324925 CDS YP_002018143.1 194336349 6463752 complement(1321751..1322365) 1 NC_011060.1 PFAM: methyltransferase; KEGG: cph:Cpha266_1584 methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 1322365 6463752 Ppha_1261 Pelodictyon phaeoclathratiforme BU-1 tRNA (guanine-N(7)-)-methyltransferase YP_002018143.1 1321751 R 324925 CDS YP_002018144.1 194336350 6463749 1323163..1325118 1 NC_011060.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cch:Cag_1014 TonB-dependent receptor-related protein; TonB-dependent receptor 1325118 6463749 Ppha_1262 Pelodictyon phaeoclathratiforme BU-1 TonB-dependent receptor YP_002018144.1 1323163 D 324925 CDS YP_002018145.1 194336351 6463746 1325206..1325865 1 NC_011060.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: cph:Cpha266_1116 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase 1325865 6463746 Ppha_1263 Pelodictyon phaeoclathratiforme BU-1 cob(II)yrinic acid a,c-diamide reductase YP_002018145.1 1325206 D 324925 CDS YP_002018146.1 194336352 6463743 1325859..1327370 1 NC_011060.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1327370 6463743 Ppha_1264 Pelodictyon phaeoclathratiforme BU-1 cobyric acid synthase YP_002018146.1 1325859 D 324925 CDS YP_002018147.1 194336353 6463748 1327367..1328449 1 NC_011060.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: cch:Cag_1011 L-threonine-O-3-phosphate decarboxylase; L-threonine-O-3-phosphate decarboxylase 1328449 6463748 Ppha_1265 Pelodictyon phaeoclathratiforme BU-1 L-threonine-O-3-phosphate decarboxylase YP_002018147.1 1327367 D 324925 CDS YP_002018148.1 194336354 6463741 1328457..1329416 1 NC_011060.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1329416 cobD 6463741 cobD Pelodictyon phaeoclathratiforme BU-1 cobalamin biosynthesis protein YP_002018148.1 1328457 D 324925 CDS YP_002018149.1 194336355 6463737 1329438..1329968 1 NC_011060.1 TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cph:Cpha266_1120 cob(I)yrinic acid a,c-diamide adenosyltransferase; cob(I)alamin adenosyltransferase 1329968 6463737 Ppha_1267 Pelodictyon phaeoclathratiforme BU-1 cob(I)alamin adenosyltransferase YP_002018149.1 1329438 D 324925 CDS YP_002018150.1 194336356 6463735 1329968..1331005 1 NC_011060.1 PFAM: transport system permease; KEGG: cch:Cag_0754 FecCD transport family protein; transport system permease 1331005 6463735 Ppha_1268 Pelodictyon phaeoclathratiforme BU-1 transport system permease YP_002018150.1 1329968 D 324925 CDS YP_002018151.1 194336357 6463732 1331007..1332272 1 NC_011060.1 PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1079 ATPase; ABC transporter-like protein 1332272 6463732 Ppha_1269 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018151.1 1331007 D 324925 CDS YP_002018152.1 194336358 6463728 1332278..1333084 1 NC_011060.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cch:Cag_1076 hypothetical protein; xylose isomerase domain-containing protein 1333084 6463728 Ppha_1270 Pelodictyon phaeoclathratiforme BU-1 xylose isomerase domain-containing protein YP_002018152.1 1332278 D 324925 CDS YP_002018153.1 194336359 6463726 1333151..1333369 1 NC_011060.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: rms:RMA_0924 antitoxin of toxin-antitoxin; DNA-binding domain-containing protein 1333369 6463726 Ppha_1271 Pelodictyon phaeoclathratiforme BU-1 DNA-binding domain-containing protein YP_002018153.1 1333151 D 324925 CDS YP_002018154.1 194336360 6463724 1333359..1333619 1 NC_011060.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1376 addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin 1333619 6463724 Ppha_1272 Pelodictyon phaeoclathratiforme BU-1 RelE/StbE family addiction module toxin YP_002018154.1 1333359 D 324925 CDS YP_002018155.1 194336361 6463721 1333633..1334826 1 NC_011060.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cch:Cag_0888 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1334826 6463721 Ppha_1273 Pelodictyon phaeoclathratiforme BU-1 iron-containing alcohol dehydrogenase YP_002018155.1 1333633 D 324925 CDS YP_002018156.1 194336362 6463718 complement(1334836..1335291) 1 NC_011060.1 SMART: nuclear protein SET; KEGG: plt:Plut_1126 nuclear protein SET; nuclear protein SET 1335291 6463718 Ppha_1274 Pelodictyon phaeoclathratiforme BU-1 nuclear protein SET YP_002018156.1 1334836 R 324925 CDS YP_002018157.1 194336363 6463717 1335516..1335854 1 NC_011060.1 KEGG: cch:Cag_0867 hypothetical protein; hypothetical protein 1335854 6463717 Ppha_1275 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018157.1 1335516 D 324925 CDS YP_002018158.1 194336364 6463714 1335981..1336229 1 NC_011060.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1078 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 1336229 6463714 Ppha_1276 Pelodictyon phaeoclathratiforme BU-1 AbrB family transcriptional regulator YP_002018158.1 1335981 D 324925 CDS YP_002018159.1 194336365 6463712 1336226..1336627 1 NC_011060.1 KEGG: cch:Cag_1077 hypothetical protein; hypothetical protein 1336627 6463712 Ppha_1277 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018159.1 1336226 D 324925 CDS YP_002018160.1 194336366 6463710 1336790..1337185 1 NC_011060.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: wsu:WS0422 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 1337185 6463710 Ppha_1278 Pelodictyon phaeoclathratiforme BU-1 Glyoxalase/bleomycin resistance protein/dioxygenase YP_002018160.1 1336790 D 324925 CDS YP_002018161.1 194336367 6463709 1337283..1338044 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1509 ABC transporter related; ABC transporter-like protein 1338044 6463709 Ppha_1279 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018161.1 1337283 D 324925 CDS YP_002018162.1 194336368 6463707 1338054..1340417 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1508 protein of unknown function DUF214; hypothetical protein 1340417 6463707 Ppha_1280 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018162.1 1338054 D 324925 CDS YP_002018163.1 194336369 6463704 1340421..1341584 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_1507 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1341584 6463704 Ppha_1281 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002018163.1 1340421 D 324925 CDS YP_002018164.1 194336370 6463703 1341636..1343009 1 NC_011060.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: plt:Plut_1122 hypothetical protein; hypothetical protein 1343009 6463703 Ppha_1282 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018164.1 1341636 D 324925 CDS YP_002018165.1 194336371 6463701 complement(1343058..1343993) 1 NC_011060.1 KEGG: cph:Cpha266_1560 hypothetical protein; hypothetical protein 1343993 6463701 Ppha_1283 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018165.1 1343058 R 324925 CDS YP_002018166.1 194336372 6463700 complement(1344310..1344825) 1 NC_011060.1 KEGG: cph:Cpha266_1758 hypothetical protein; hypothetical protein 1344825 6463700 Ppha_1284 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018166.1 1344310 R 324925 CDS YP_002018167.1 194336373 6463698 complement(1344997..1347801) 1 NC_011060.1 KEGG: cph:Cpha266_1757 hypothetical protein; hypothetical protein 1347801 6463698 Ppha_1285 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018167.1 1344997 R 324925 CDS YP_002018168.1 194336374 6463697 complement(1347985..1348491) 1 NC_011060.1 KEGG: cph:Cpha266_1753 YapH protein; YapH protein 1348491 6463697 Ppha_1286 Pelodictyon phaeoclathratiforme BU-1 YapH protein YP_002018168.1 1347985 R 324925 CDS YP_002018169.1 194336375 6463696 complement(1348980..1349855) 1 NC_011060.1 KEGG: cph:Cpha266_1756 hypothetical protein; hypothetical protein 1349855 6463696 Ppha_1287 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018169.1 1348980 R 324925 CDS YP_002018170.1 194336376 6463695 complement(1350106..1350633) 1 NC_011060.1 KEGG: cph:Cpha266_1753 YapH protein; YapH protein 1350633 6463695 Ppha_1288 Pelodictyon phaeoclathratiforme BU-1 YapH protein YP_002018170.1 1350106 R 324925 CDS YP_002018171.1 194336377 6463693 1350864..1351100 1 NC_011060.1 KEGG: cph:Cpha266_2339 transposase, IS4 family protein; transposase, IS4 family protein 1351100 6463693 Ppha_1289 Pelodictyon phaeoclathratiforme BU-1 transposase, IS4 family protein YP_002018171.1 1350864 D 324925 CDS YP_002018172.1 194336378 6463692 1351078..1351332 1 NC_011060.1 KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase, IS4 family protein 1351332 6463692 Ppha_1290 Pelodictyon phaeoclathratiforme BU-1 transposase, IS4 family protein YP_002018172.1 1351078 D 324925 CDS YP_002018173.1 194336379 6463688 1351391..1351834 1 NC_011060.1 PFAM: transposase IS200-family protein; KEGG: amr:AM1_C0253 transposase, IS200-family; transposase IS200-family protein 1351834 6463688 Ppha_1291 Pelodictyon phaeoclathratiforme BU-1 transposase IS200-family protein YP_002018173.1 1351391 D 324925 CDS YP_002018174.1 194336380 6463687 complement(1352006..1352506) 1 NC_011060.1 KEGG: sal:Sala_2858 hypothetical protein; hypothetical protein 1352506 6463687 Ppha_1292 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018174.1 1352006 R 324925 CDS YP_002018175.1 194336381 6463686 1353054..1353590 1 NC_011060.1 PFAM: cobalbumin biosynthesis protein; KEGG: cch:Cag_0846 cobalamin biosynthesis protein CobP; adenosylcobinamide-phosphate guanylyltransferase 1353590 6463686 Ppha_1293 Pelodictyon phaeoclathratiforme BU-1 adenosylcobinamide-phosphate guanylyltransferase YP_002018175.1 1353054 D 324925 CDS YP_002018176.1 194336382 6463680 1353642..1354706 1 NC_011060.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1354706 cobT 6463680 cobT Pelodictyon phaeoclathratiforme BU-1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_002018176.1 1353642 D 324925 CDS YP_002018177.1 194336383 6463685 1354710..1355474 1 NC_011060.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cch:Cag_1057 cobalamin-5-phosphate synthase CobS; cobalamin 5'-phosphate synthase 1355474 6463685 Ppha_1295 Pelodictyon phaeoclathratiforme BU-1 cobalamin 5'-phosphate synthase YP_002018177.1 1354710 D 324925 CDS YP_002018178.1 194336384 6461771 complement(1355504..1356196) 1 NC_011060.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2593 metallophosphoesterase; metallophosphoesterase 1356196 6461771 Ppha_1296 Pelodictyon phaeoclathratiforme BU-1 metallophosphoesterase YP_002018178.1 1355504 R 324925 CDS YP_002018179.1 194336385 6462492 complement(1356311..1356817) 1 NC_011060.1 KEGG: cch:Cag_1042 hypothetical protein; hypothetical protein 1356817 6462492 Ppha_1297 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018179.1 1356311 R 324925 CDS YP_002018180.1 194336386 6461870 1357091..1358419 1 NC_011060.1 KEGG: dol:Dole_3264 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1358419 6461870 Ppha_1298 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor signal transduction histidine kinase YP_002018180.1 1357091 D 324925 CDS YP_002018181.1 194336387 6461890 complement(1358459..1358824) 1 NC_011060.1 KEGG: cph:Cpha266_0521 hypothetical protein; hypothetical protein 1358824 6461890 Ppha_1299 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018181.1 1358459 R 324925 CDS YP_002018182.1 194336388 6462343 complement(1358879..1361194) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like; hypothetical protein 1361194 6462343 Ppha_1300 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018182.1 1358879 R 324925 CDS YP_002018183.1 194336389 6461225 1361416..1363017 1 NC_011060.1 KEGG: cch:Cag_1430 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1363017 6461225 Ppha_1301 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002018183.1 1361416 D 324925 CDS YP_002018184.1 194336390 6462408 complement(1363036..1363851) 1 NC_011060.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cph:Cpha266_1256 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1363851 6462408 Ppha_1302 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002018184.1 1363036 R 324925 CDS YP_002018185.1 194336391 6461869 complement(1363899..1364912) 1 NC_011060.1 KEGG: cch:Cag_1032 hydrogenase/sulfur reductase, beta subunit; hydrogenase/sulfur reductase subunit beta 1364912 6461869 Ppha_1303 Pelodictyon phaeoclathratiforme BU-1 hydrogenase/sulfur reductase subunit beta YP_002018185.1 1363899 R 324925 CDS YP_002018186.1 194336392 6462415 complement(1364926..1365756) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_1258 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1365756 6462415 Ppha_1304 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002018186.1 1364926 R 324925 CDS YP_002018187.1 194336393 6461093 complement(1365769..1366218) 1 NC_011060.1 PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: cph:Cpha266_1259 methyl-viologen-reducing hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase subunit delta 1366218 6461093 Ppha_1305 Pelodictyon phaeoclathratiforme BU-1 methyl-viologen-reducing hydrogenase subunit delta YP_002018187.1 1365769 R 324925 CDS YP_002018188.1 194336394 6462509 complement(1366271..1368241) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_1260 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1368241 6462509 Ppha_1306 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002018188.1 1366271 R 324925 CDS YP_002018189.1 194336395 6462350 complement(1368344..1369837) 1 NC_011060.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cch:Cag_1028 heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; CoB--CoM heterodisulfide reductase 1369837 6462350 Ppha_1307 Pelodictyon phaeoclathratiforme BU-1 CoB--CoM heterodisulfide reductase YP_002018189.1 1368344 R 324925 CDS YP_002018190.1 194336396 6460997 1370181..1371383 1 NC_011060.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1371383 6460997 Ppha_1308 Pelodictyon phaeoclathratiforme BU-1 aspartate aminotransferase YP_002018190.1 1370181 D 324925 CDS YP_002018191.1 194336397 6461832 complement(1371465..1373051) 1 NC_011060.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: cch:Cag_1020 YjeF-related protein-like; carbohydrate kinase 1373051 6461832 Ppha_1309 Pelodictyon phaeoclathratiforme BU-1 carbohydrate kinase YP_002018191.1 1371465 R 324925 CDS YP_002018192.1 194336398 6462044 complement(1373084..1375366) 1 NC_011060.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 1375366 6462044 Ppha_1310 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylformylglycinamidine synthase II YP_002018192.1 1373084 R 324925 CDS YP_002018193.1 194336399 6461979 complement(1375394..1378468) 1 NC_011060.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1378468 secA 6461979 secA Pelodictyon phaeoclathratiforme BU-1 preprotein translocase subunit SecA YP_002018193.1 1375394 R 324925 CDS YP_002018194.1 194336400 6462167 complement(1378678..1379565) 1 NC_011060.1 PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cph:Cpha266_1679 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein 1379565 6462167 Ppha_1312 Pelodictyon phaeoclathratiforme BU-1 NmrA family protein YP_002018194.1 1378678 R 324925 CDS YP_002018195.1 194336401 6461359 complement(1379630..1380568) 1 NC_011060.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cph:Cpha266_1267 HhH-GPD family protein; 8-oxoguanine DNA glycosylase 1380568 6461359 Ppha_1313 Pelodictyon phaeoclathratiforme BU-1 8-oxoguanine DNA glycosylase YP_002018195.1 1379630 R 324925 CDS YP_002018196.1 194336402 6462551 complement(1381058..1381768) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: cph:Cpha266_1275 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1381768 6462551 Ppha_1314 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002018196.1 1381058 R 324925 CDS YP_002018197.1 194336403 6462545 complement(1381891..1382451) 1 NC_011060.1 KEGG: cch:Cag_1069 hypothetical protein; hypothetical protein 1382451 6462545 Ppha_1315 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018197.1 1381891 R 324925 CDS YP_002018198.1 194336404 6461192 complement(1382484..1383368) 1 NC_011060.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1383368 6461192 Ppha_1316 Pelodictyon phaeoclathratiforme BU-1 lipoyl synthase YP_002018198.1 1382484 R 324925 CDS YP_002018199.1 194336405 6461861 complement(1383566..1383841) 1 NC_011060.1 PFAM: histone family protein DNA-binding protein; KEGG: cch:Cag_0362 histone-like DNA-binding protein; histone family protein DNA-binding protein 1383841 6461861 Ppha_1317 Pelodictyon phaeoclathratiforme BU-1 histone family protein DNA-binding protein YP_002018199.1 1383566 R 324925 CDS YP_002018200.1 194336406 6462448 1384254..1386296 1 NC_011060.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: plt:Plut_0343 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 1386296 6462448 Ppha_1318 Pelodictyon phaeoclathratiforme BU-1 multi-sensor signal transduction histidine kinase YP_002018200.1 1384254 D 324925 CDS YP_002018201.1 194336407 6461976 1386331..1387689 1 NC_011060.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: plt:Plut_0344 two component transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 1387689 6461976 Ppha_1319 Pelodictyon phaeoclathratiforme BU-1 Fis family two component sigma-54 specific transcriptional regulator YP_002018201.1 1386331 D 324925 CDS YP_002018202.1 194336408 6461667 1387945..1388274 1 NC_011060.1 KEGG: pvi:Cvib_0916 hypothetical protein; hypothetical protein 1388274 6461667 Ppha_1320 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018202.1 1387945 D 324925 CDS YP_002018203.1 194336409 6462464 1388356..1388718 1 NC_011060.1 KEGG: plt:Plut_0346 hypothetical protein; hypothetical protein 1388718 6462464 Ppha_1321 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018203.1 1388356 D 324925 CDS YP_002018204.1 194336410 6462572 1388763..1389173 1 NC_011060.1 KEGG: cch:Cag_0916 C-type cytochrome; hypothetical protein 1389173 6462572 Ppha_1322 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018204.1 1388763 D 324925 CDS YP_002018205.1 194336411 6462476 1389246..1390079 1 NC_011060.1 KEGG: cph:Cpha266_1270 hypothetical protein; hypothetical protein 1390079 6462476 Ppha_1323 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018205.1 1389246 D 324925 CDS YP_002018206.1 194336412 6461745 complement(1390225..1390593) 1 NC_011060.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cph:Cpha266_1457 dinitrogenase iron-molybdenum cofactor biosynthesis; dinitrogenase iron-molybdenum cofactor biosynthesis protein 1390593 6461745 Ppha_1324 Pelodictyon phaeoclathratiforme BU-1 dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_002018206.1 1390225 R 324925 CDS YP_002018207.1 194336413 6461942 1390948..1391559 1 NC_011060.1 PFAM: regulatory protein TetR; KEGG: cph:Cpha266_1240 transcriptional regulator, TetR family; TetR family transcriptional regulator 1391559 6461942 Ppha_1325 Pelodictyon phaeoclathratiforme BU-1 TetR family transcriptional regulator YP_002018207.1 1390948 D 324925 CDS YP_002018208.1 194336414 6462601 1391556..1392752 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1241 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1392752 6462601 Ppha_1326 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002018208.1 1391556 D 324925 CDS YP_002018209.1 194336415 6461698 1392749..1393951 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1242 protein of unknown function DUF214; hypothetical protein 1393951 6461698 Ppha_1327 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018209.1 1392749 D 324925 CDS YP_002018210.1 194336416 6462428 1393953..1394687 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1243 ABC transporter related; ABC transporter-like protein 1394687 6462428 Ppha_1328 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018210.1 1393953 D 324925 CDS YP_002018211.1 194336417 6460950 1394982..1395923 1 NC_011060.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA 1395923 moaC 6460950 moaC Pelodictyon phaeoclathratiforme BU-1 bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA YP_002018211.1 1394982 D 324925 CDS YP_002018212.1 194336418 6461898 1395920..1397143 1 NC_011060.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cch:Cag_1064 molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1397143 6461898 Ppha_1330 Pelodictyon phaeoclathratiforme BU-1 molybdenum cofactor synthesis domain-containing protein YP_002018212.1 1395920 D 324925 CDS YP_002018213.1 194336419 6461291 1397148..1398242 1 NC_011060.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA 1398242 6461291 Ppha_1331 Pelodictyon phaeoclathratiforme BU-1 bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA YP_002018213.1 1397148 D 324925 CDS YP_002018214.1 194336420 6461129 complement(1398323..1398727) 1 NC_011060.1 KEGG: cph:Cpha266_2508 hypothetical protein; hypothetical protein 1398727 6461129 Ppha_1332 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018214.1 1398323 R 324925 CDS YP_002018215.1 194336421 6460975 complement(1399147..1399629) 1 NC_011060.1 KEGG: cph:Cpha266_0683 hypothetical protein; hypothetical protein 1399629 6460975 Ppha_1334 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018215.1 1399147 R 324925 CDS YP_002018216.1 194336422 6461139 1400201..1402987 1 NC_011060.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cte:CT0496 polysulfide reductase, subunit A; molybdopterin oxidoreductase 1402987 6461139 Ppha_1335 Pelodictyon phaeoclathratiforme BU-1 molybdopterin oxidoreductase YP_002018216.1 1400201 D 324925 CDS YP_002018217.1 194336423 6461441 1403013..1403612 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0495 polysulfide reductase, subunit B; 4Fe-4S ferredoxin 1403612 6461441 Ppha_1336 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002018217.1 1403013 D 324925 CDS YP_002018218.1 194336424 6462579 1403630..1404544 1 NC_011060.1 PFAM: Polysulphide reductase NrfD; KEGG: pvi:Cvib_1687 polysulphide reductase, NrfD; polysulfide reductase NrfD 1404544 6462579 Ppha_1337 Pelodictyon phaeoclathratiforme BU-1 polysulfide reductase NrfD YP_002018218.1 1403630 D 324925 CDS YP_002018219.1 194336425 6461974 1404590..1405171 1 NC_011060.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: cte:CT0493 hypothetical protein; cytoplasmic chaperone TorD family protein 1405171 6461974 Ppha_1338 Pelodictyon phaeoclathratiforme BU-1 cytoplasmic chaperone TorD family protein YP_002018219.1 1404590 D 324925 CDS YP_002018220.1 194336426 6461947 1405421..1406401 1 NC_011060.1 KEGG: cph:Cpha266_0734 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1406401 6461947 Ppha_1339 Pelodictyon phaeoclathratiforme BU-1 molybdenum cofactor biosynthesis protein A YP_002018220.1 1405421 D 324925 CDS YP_002018221.1 194336427 6461443 complement(1406420..1406860) 1 NC_011060.1 PFAM: MOSC domain containing protein; KEGG: cph:Cpha266_0733 MOSC domain containing protein; MOSC domain-containing protein 1406860 6461443 Ppha_1340 Pelodictyon phaeoclathratiforme BU-1 MOSC domain-containing protein YP_002018221.1 1406420 R 324925 CDS YP_002018222.1 194336428 6462314 1407242..1407643 1 NC_011060.1 PFAM: OsmC family protein; KEGG: cph:Cpha266_1001 OsmC family protein; OsmC family protein 1407643 6462314 Ppha_1341 Pelodictyon phaeoclathratiforme BU-1 OsmC family protein YP_002018222.1 1407242 D 324925 CDS YP_002018223.1 194336429 6461354 1407754..1407927 1 NC_011060.1 KEGG: cte:CT1087 sulfide-quinone reductase; sulfide-quinone reductase 1407927 6461354 Ppha_1342 Pelodictyon phaeoclathratiforme BU-1 sulfide-quinone reductase YP_002018223.1 1407754 D 324925 CDS YP_002018224.1 194336430 6462301 1407924..1408397 1 NC_011060.1 PFAM: protein of unknown function DUF134; KEGG: cch:Cag_0886 hypothetical protein; hypothetical protein 1408397 6462301 Ppha_1343 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018224.1 1407924 D 324925 CDS YP_002018225.1 194336431 6461658 1408447..1409103 1 NC_011060.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1238 methyltransferase type 11; type 11 methyltransferase 1409103 6461658 Ppha_1344 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002018225.1 1408447 D 324925 CDS YP_002018226.1 194336432 6461161 1409176..1409850 1 NC_011060.1 KEGG: cph:Cpha266_2565 hypothetical protein; hypothetical protein 1409850 6461161 Ppha_1345 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018226.1 1409176 D 324925 CDS YP_002018227.1 194336433 6461317 1409942..1410205 1 NC_011060.1 KEGG: cte:CT0982 hypothetical protein; hypothetical protein 1410205 6461317 Ppha_1346 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018227.1 1409942 D 324925 CDS YP_002018228.1 194336434 6461740 1410324..1411778 1 NC_011060.1 KEGG: cch:Cag_0882 sulfide-quinone reductase; sulfide-quinone reductase 1411778 6461740 Ppha_1347 Pelodictyon phaeoclathratiforme BU-1 sulfide-quinone reductase YP_002018228.1 1410324 D 324925 CDS YP_002018229.1 194336435 6461756 1411818..1411976 1 NC_011060.1 KEGG: cch:Cag_0881 hypothetical protein; hypothetical protein 1411976 6461756 Ppha_1348 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018229.1 1411818 D 324925 CDS YP_002018230.1 194336436 6461397 complement(1411981..1412571) 1 NC_011060.1 PFAM: protein of unknown function DUF218; KEGG: cte:CT1146 hypothetical protein; hypothetical protein 1412571 6461397 Ppha_1349 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018230.1 1411981 R 324925 CDS YP_002018231.1 194336437 6462506 1412952..1415051 1 NC_011060.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: GAF domain protein; multi-sensor hybrid histidine kinase 1415051 6462506 Ppha_1350 Pelodictyon phaeoclathratiforme BU-1 multi-sensor hybrid histidine kinase YP_002018231.1 1412952 D 324925 CDS YP_002018232.1 194336438 6461385 1415114..1415962 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_0383 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1415962 6461385 Ppha_1351 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002018232.1 1415114 D 324925 CDS YP_002018233.1 194336439 6461448 1416126..1417169 1 NC_011060.1 PFAM: basic membrane lipoprotein; KEGG: cph:Cpha266_1340 basic membrane lipoprotein; basic membrane lipoprotein 1417169 6461448 Ppha_1352 Pelodictyon phaeoclathratiforme BU-1 basic membrane lipoprotein YP_002018233.1 1416126 D 324925 CDS YP_002018234.1 194336440 6461298 1417259..1418254 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_0793 3-beta hydroxysteroid dehydrogenase/isomerase family protein; NAD-dependent epimerase/dehydratase 1418254 6461298 Ppha_1353 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002018234.1 1417259 D 324925 CDS YP_002018235.1 194336441 6462595 complement(1418297..1419085) 1 NC_011060.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1338 methyltransferase type 11; type 11 methyltransferase 1419085 6462595 Ppha_1354 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002018235.1 1418297 R 324925 CDS YP_002018236.1 194336442 6462197 complement(1419158..1419352) 1 NC_011060.1 KEGG: cch:Cag_0897 hypothetical protein; hypothetical protein 1419352 6462197 Ppha_1355 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018236.1 1419158 R 324925 CDS YP_002018237.1 194336443 6461707 complement(1419467..1420795) 1 NC_011060.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1420795 pyrC 6461707 pyrC Pelodictyon phaeoclathratiforme BU-1 dihydroorotase YP_002018237.1 1419467 R 324925 CDS YP_002018238.1 194336444 6461496 1421086..1421682 1 NC_011060.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cch:Cag_0899 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 1421682 6461496 Ppha_1357 Pelodictyon phaeoclathratiforme BU-1 5-formyltetrahydrofolate cyclo-ligase YP_002018238.1 1421086 D 324925 CDS YP_002018239.1 194336445 6461294 1421686..1423812 1 NC_011060.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1423812 6461294 Ppha_1358 Pelodictyon phaeoclathratiforme BU-1 polyphosphate kinase YP_002018239.1 1421686 D 324925 CDS YP_002018240.1 194336446 6461627 1423831..1424265 1 NC_011060.1 KEGG: cch:Cag_0901 ribose/galactose isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 1424265 6461627 Ppha_1359 Pelodictyon phaeoclathratiforme BU-1 RpiB/LacA/LacB family sugar-phosphate isomerase YP_002018240.1 1423831 D 324925 CDS YP_002018241.1 194336447 6462220 1424256..1424945 1 NC_011060.1 PFAM: CBS domain containing protein; KEGG: cph:Cpha266_1331 CBS domain containing protein; signal transduction protein with CBS domains 1424945 6462220 Ppha_1360 Pelodictyon phaeoclathratiforme BU-1 signal transduction protein with CBS domains YP_002018241.1 1424256 D 324925 CDS YP_002018242.1 194336448 6462445 1425072..1426289 1 NC_011060.1 KEGG: cph:Cpha266_1330 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1426289 6462445 Ppha_1361 Pelodictyon phaeoclathratiforme BU-1 amidohydrolase YP_002018242.1 1425072 D 324925 CDS YP_002018243.1 194336449 6461816 complement(1426374..1427348) 1 NC_011060.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1427348 6461816 Ppha_1362 Pelodictyon phaeoclathratiforme BU-1 fructose-bisphosphate aldolase YP_002018243.1 1426374 R 324925 CDS YP_002018244.1 194336450 6462066 1427510..1429576 1 NC_011060.1 KEGG: cph:Cpha266_1304 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1429576 6462066 Ppha_1363 Pelodictyon phaeoclathratiforme BU-1 carboxyl-terminal protease YP_002018244.1 1427510 D 324925 CDS YP_002018245.1 194336451 6463677 1429737..1430276 1 NC_011060.1 KEGG: xau:Xaut_0355 phospholipid N-methyltransferase; phospholipid N-methyltransferase 1430276 6463677 Ppha_1365 Pelodictyon phaeoclathratiforme BU-1 phospholipid N-methyltransferase YP_002018245.1 1429737 D 324925 CDS YP_002018246.1 194336452 6463669 1430297..1432360 1 NC_011060.1 KEGG: cph:Cpha266_1304 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1432360 6463669 Ppha_1366 Pelodictyon phaeoclathratiforme BU-1 carboxyl-terminal protease YP_002018246.1 1430297 D 324925 CDS YP_002018247.1 194336453 6463668 complement(1432357..1433739) 1 NC_011060.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 1433739 6463668 Ppha_1367 Pelodictyon phaeoclathratiforme BU-1 argininosuccinate lyase YP_002018247.1 1432357 R 324925 CDS YP_002018248.1 194336454 6463666 1433910..1434362 1 NC_011060.1 PFAM: peptidase S24 and S26 domain protein; KEGG: pvi:Cvib_0128 prophage repressor; peptidase S24 and S26 domain-containing protein 1434362 6463666 Ppha_1368 Pelodictyon phaeoclathratiforme BU-1 peptidase S24 and S26 domain-containing protein YP_002018248.1 1433910 D 324925 CDS YP_002018249.1 194336455 6463665 1434378..1435658 1 NC_011060.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: cph:Cpha266_1031 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1435658 6463665 Ppha_1369 Pelodictyon phaeoclathratiforme BU-1 DNA-directed DNA polymerase YP_002018249.1 1434378 D 324925 CDS YP_002018250.1 194336456 6463663 complement(1435773..1436168) 1 NC_011060.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: cph:Cpha266_2176 death-on-curing family protein; death-on-curing family protein 1436168 6463663 Ppha_1370 Pelodictyon phaeoclathratiforme BU-1 death-on-curing family protein YP_002018250.1 1435773 R 324925 CDS YP_002018251.1 194336457 6463660 complement(1436165..1436386) 1 NC_011060.1 TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2175 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE 1436386 6463660 Ppha_1371 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator/antitoxin MazE YP_002018251.1 1436165 R 324925 CDS YP_002018252.1 194336458 6463659 complement(1436584..1438707) 1 NC_011060.1 KEGG: pvi:Cvib_0831 hypothetical protein; hypothetical protein 1438707 6463659 Ppha_1372 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018252.1 1436584 R 324925 CDS YP_002018253.1 194336459 6463657 complement(1438728..1439075) 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1552 uncharacterised conserved protein UCP025560; hypothetical protein 1439075 6463657 Ppha_1373 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018253.1 1438728 R 324925 CDS YP_002018254.1 194336460 6463656 complement(1439093..1439296) 1 NC_011060.1 KEGG: cph:Cpha266_1551 hypothetical protein; hypothetical protein 1439296 6463656 Ppha_1374 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018254.1 1439093 R 324925 CDS YP_002018255.1 194336461 6463655 1439539..1441083 1 NC_011060.1 PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1326 pentapeptide repeat protein; pentapeptide repeat-containing protein 1441083 6463655 Ppha_1375 Pelodictyon phaeoclathratiforme BU-1 pentapeptide repeat-containing protein YP_002018255.1 1439539 D 324925 CDS YP_002018256.1 194336462 6463654 1441298..1441579 1 NC_011060.1 PFAM: plasmid maintenance system killer; KEGG: chu:CHU_0643 hypothetical protein; plasmid maintenance system killer protein 1441579 6463654 Ppha_1376 Pelodictyon phaeoclathratiforme BU-1 plasmid maintenance system killer protein YP_002018256.1 1441298 D 324925 CDS YP_002018257.1 194336463 6463653 1441581..1441880 1 NC_011060.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: chu:CHU_0642 hypothetical protein; XRE family plasmid maintenance system antidote protein 1441880 6463653 Ppha_1377 Pelodictyon phaeoclathratiforme BU-1 XRE family plasmid maintenance system antidote protein YP_002018257.1 1441581 D 324925 CDS YP_002018258.1 194336464 6463650 complement(1441966..1443168) 1 NC_011060.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1443168 6463650 Ppha_1378 Pelodictyon phaeoclathratiforme BU-1 argininosuccinate synthase YP_002018258.1 1441966 R 324925 CDS YP_002018259.1 194336465 6463645 complement(1443185..1443631) 1 NC_011060.1 PFAM: arginine repressor; KEGG: cch:Cag_0776 arginine repressor; arginine repressor ArgR 1443631 6463645 Ppha_1379 Pelodictyon phaeoclathratiforme BU-1 arginine repressor ArgR YP_002018259.1 1443185 R 324925 CDS YP_002018260.1 194336466 6461288 complement(1443646..1444662) 1 NC_011060.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1444662 6461288 Ppha_1380 Pelodictyon phaeoclathratiforme BU-1 ornithine carbamoyltransferase YP_002018260.1 1443646 R 324925 CDS YP_002018261.1 194336467 6463641 complement(1444667..1445581) 1 NC_011060.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1445581 6463641 Ppha_1381 Pelodictyon phaeoclathratiforme BU-1 acetylglutamate kinase YP_002018261.1 1444667 R 324925 CDS YP_002018262.1 194336468 6463638 complement(1445621..1446904) 1 NC_011060.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1446904 argJ 6463638 argJ Pelodictyon phaeoclathratiforme BU-1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_002018262.1 1445621 R 324925 CDS YP_002018263.1 194336469 6463636 complement(1446935..1447939) 1 NC_011060.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1447939 argC 6463636 argC Pelodictyon phaeoclathratiforme BU-1 N-acetyl-gamma-glutamyl-phosphate reductase YP_002018263.1 1446935 R 324925 CDS YP_002018264.1 194336470 6463634 1448076..1448210 1 NC_011060.1 hypothetical protein 1448210 6463634 Ppha_1384 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018264.1 1448076 D 324925 CDS YP_002018265.1 194336471 6463633 1448207..1449109 1 NC_011060.1 KEGG: cph:Cpha266_1319 phosphate-binding protein; phosphate-binding protein 1449109 6463633 Ppha_1385 Pelodictyon phaeoclathratiforme BU-1 phosphate-binding protein YP_002018265.1 1448207 D 324925 CDS YP_002018266.1 194336472 6463630 1449115..1450416 1 NC_011060.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pvi:Cvib_0875 diguanylate cyclase; diguanylate cyclase 1450416 6463630 Ppha_1386 Pelodictyon phaeoclathratiforme BU-1 diguanylate cyclase YP_002018266.1 1449115 D 324925 CDS YP_002018267.1 194336473 6463629 1450406..1451677 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: plt:Plut_1052 hypothetical protein; hypothetical protein 1451677 6463629 Ppha_1387 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018267.1 1450406 D 324925 CDS YP_002018268.1 194336474 6463628 1451700..1452950 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1316 protein of unknown function DUF214; hypothetical protein 1452950 6463628 Ppha_1388 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018268.1 1451700 D 324925 CDS YP_002018269.1 194336475 6463627 complement(1452971..1453609) 1 NC_011060.1 PFAM: GCN5-related N-acetyltransferase; Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1314 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1453609 6463627 Ppha_1389 Pelodictyon phaeoclathratiforme BU-1 N-acetyltransferase GCN5 YP_002018269.1 1452971 R 324925 CDS YP_002018270.1 194336476 6463626 1453860..1454510 1 NC_011060.1 PFAM: protein of unknown function UPF0016; KEGG: cph:Cpha266_1312 protein of unknown function UPF0016; hypothetical protein 1454510 6463626 Ppha_1390 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018270.1 1453860 D 324925 CDS YP_002018271.1 194336477 6463625 complement(1454609..1455463) 1 NC_011060.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1455463 6463625 Ppha_1391 Pelodictyon phaeoclathratiforme BU-1 prolipoprotein diacylglyceryl transferase YP_002018271.1 1454609 R 324925 CDS YP_002018272.1 194336478 6463624 1455572..1456768 1 NC_011060.1 PFAM: ATP-grasp domain protein; KEGG: cph:Cpha266_1307 ATP citrate lyase subunit 1; ATP-grasp domain-containing protein 1456768 6463624 Ppha_1392 Pelodictyon phaeoclathratiforme BU-1 ATP-grasp domain-containing protein YP_002018272.1 1455572 D 324925 CDS YP_002018273.1 194336479 6463622 1456829..1458661 1 NC_011060.1 PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cph:Cpha266_1306 ATP citrate lyase subunit 2; ATP-citrate lyase/succinyl-CoA ligase 1458661 6463622 Ppha_1393 Pelodictyon phaeoclathratiforme BU-1 ATP-citrate lyase/succinyl-CoA ligase YP_002018273.1 1456829 D 324925 CDS YP_002018274.1 194336480 6463621 1459032..1459319 1 NC_011060.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cph:Cpha266_1273 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 1459319 6463621 Ppha_1394 Pelodictyon phaeoclathratiforme BU-1 RNP-1 like RNA-binding protein YP_002018274.1 1459032 D 324925 CDS YP_002018275.1 194336481 6463623 1459514..1459702 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_0104 hypothetical protein; 4Fe-4S ferredoxin 1459702 6463623 Ppha_1395 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002018275.1 1459514 D 324925 CDS YP_002018276.1 194336482 6463620 complement(1460577..1461011) 1 NC_011060.1 PFAM: protein of unknown function DUF86; KEGG: ppd:Ppro_2947 protein of unknown function DUF86; hypothetical protein 1461011 6463620 Ppha_1396 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018276.1 1460577 R 324925 CDS YP_002018277.1 194336483 6463619 complement(1461008..1461412) 1 NC_011060.1 PFAM: DNA polymerase beta domain protein region; KEGG: bcz:pE33L466_0269 possible nucleotidyltransferase; DNA polymerase beta domain-containing protein 1461412 6463619 Ppha_1397 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase beta domain-containing protein YP_002018277.1 1461008 R 324925 CDS YP_002018278.1 194336484 6463618 1461549..1462259 1 NC_011060.1 KEGG: cph:Cpha266_1287 hypothetical protein; hypothetical protein 1462259 6463618 Ppha_1398 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018278.1 1461549 D 324925 CDS YP_002018279.1 194336485 6463617 1462500..1463135 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 1463135 6463617 Ppha_1399 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018279.1 1462500 D 324925 CDS YP_002018280.1 194336486 6463616 complement(1463250..1463501) 1 NC_011060.1 KEGG: cph:Cpha266_1286 hypothetical protein; hypothetical protein 1463501 6463616 Ppha_1400 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018280.1 1463250 R 324925 CDS YP_002018281.1 194336487 6463615 complement(1463520..1463876) 1 NC_011060.1 KEGG: pdi:BDI_2151 hypothetical protein; hypothetical protein 1463876 6463615 Ppha_1401 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018281.1 1463520 R 324925 CDS YP_002018282.1 194336488 6463614 1464079..1464309 1 NC_011060.1 KEGG: cph:Cpha266_1284 hypothetical protein; hypothetical protein 1464309 6463614 Ppha_1402 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018282.1 1464079 D 324925 CDS YP_002018283.1 194336489 6463613 1464329..1464628 1 NC_011060.1 KEGG: cph:Cpha266_1285 hypothetical protein; hypothetical protein 1464628 6463613 Ppha_1403 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018283.1 1464329 D 324925 CDS YP_002018284.1 194336490 6463612 1464776..1465168 1 NC_011060.1 KEGG: cph:Cpha266_1289 hypothetical protein; hypothetical protein 1465168 6463612 Ppha_1404 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018284.1 1464776 D 324925 CDS YP_002018285.1 194336491 6463610 complement(1465140..1465532) 1 NC_011060.1 KEGG: cph:Cpha266_1290 hypothetical protein; hypothetical protein 1465532 6463610 Ppha_1405 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018285.1 1465140 R 324925 CDS YP_002018286.1 194336492 6463609 complement(1465529..1466680) 1 NC_011060.1 KEGG: cph:Cpha266_1292 hypothetical protein; hypothetical protein 1466680 6463609 Ppha_1406 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018286.1 1465529 R 324925 CDS YP_002018287.1 194336493 6463607 complement(1467714..1468097) 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: ava:Ava_0767 PilT protein-like; PilT protein domain-containing protein 1468097 6463607 Ppha_1408 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002018287.1 1467714 R 324925 CDS YP_002018288.1 194336494 6463606 complement(1468094..1468315) 1 NC_011060.1 KEGG: ava:Ava_4033 hypothetical protein; hypothetical protein 1468315 6463606 Ppha_1409 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018288.1 1468094 R 324925 CDS YP_002018289.1 194336495 6463605 1468583..1469290 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 1469290 6463605 Ppha_1410 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018289.1 1468583 D 324925 CDS YP_002018290.1 194336496 6463602 complement(1469415..1470368) 1 NC_011060.1 KEGG: xau:Xaut_0217 hypothetical protein; hypothetical protein 1470368 6463602 Ppha_1411 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018290.1 1469415 R 324925 CDS YP_002018291.1 194336497 6463600 join(1470657..1471127,1471127..1472137) 1 NC_011060.1 hypothetical protein 1472137 6463600 Ppha_1413 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018291.1 1470657 D 324925 CDS YP_002018292.1 194336498 6463599 complement(1472340..1472609) 1 NC_011060.1 KEGG: pdi:BDI_2151 hypothetical protein; hypothetical protein 1472609 6463599 Ppha_1414 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018292.1 1472340 R 324925 CDS YP_002018293.1 194336499 6463596 complement(1473568..1474011) 1 NC_011060.1 PFAM: transposase IS200-family protein; KEGG: amr:AM1_C0253 transposase, IS200-family; transposase IS200-family protein 1474011 6463596 Ppha_1416 Pelodictyon phaeoclathratiforme BU-1 transposase IS200-family protein YP_002018293.1 1473568 R 324925 CDS YP_002018294.1 194336500 6463595 complement(1474926..1475639) 1 NC_011060.1 KEGG: son:SO_4263 hypothetical protein; hypothetical protein 1475639 6463595 Ppha_1417 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018294.1 1474926 R 324925 CDS YP_002018295.1 194336501 6463591 complement(1476331..1478094) 1 NC_011060.1 hypothetical protein 1478094 6463591 Ppha_1419 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018295.1 1476331 R 324925 CDS YP_002018296.1 194336502 6463590 complement(1478210..1480639) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1708 hypothetical protein; hypothetical protein 1480639 6463590 Ppha_1420 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018296.1 1478210 R 324925 CDS YP_002018297.1 194336503 6463589 complement(1480845..1484912) 1 NC_011060.1 KEGG: dge:Dgeo_1545 type II DNA modification enzyme; type II DNA modification enzyme 1484912 6463589 Ppha_1421 Pelodictyon phaeoclathratiforme BU-1 type II DNA modification enzyme YP_002018297.1 1480845 R 324925 CDS YP_002018298.1 194336504 6463588 complement(1484909..1487785) 1 NC_011060.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1301 helicase domain protein; helicase domain-containing protein 1487785 6463588 Ppha_1422 Pelodictyon phaeoclathratiforme BU-1 helicase domain-containing protein YP_002018298.1 1484909 R 324925 CDS YP_002018299.1 194336505 6463587 complement(1487782..1492953) 1 NC_011060.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1302 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1492953 6463587 Ppha_1423 Pelodictyon phaeoclathratiforme BU-1 DEAD/DEAH box helicase YP_002018299.1 1487782 R 324925 CDS YP_002018300.1 194336506 6463586 complement(1493382..1495595) 1 NC_011060.1 KEGG: ppd:Ppro_1864 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; helicase, RecD/TraA family 1495595 6463586 Ppha_1425 Pelodictyon phaeoclathratiforme BU-1 helicase, RecD/TraA family YP_002018300.1 1493382 R 324925 CDS YP_002018301.1 194336507 6461578 complement(1495585..1495893) 1 NC_011060.1 PFAM: histone family protein DNA-binding protein; KEGG: cph:Cpha266_0424 histone family protein DNA-binding protein; histone family protein DNA-binding protein 1495893 6461578 Ppha_1426 Pelodictyon phaeoclathratiforme BU-1 histone family protein DNA-binding protein YP_002018301.1 1495585 R 324925 CDS YP_002018302.1 194336508 6462367 complement(1496075..1498579) 1 NC_011060.1 KEGG: plt:Plut_1093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1498579 6462367 Ppha_1427 Pelodictyon phaeoclathratiforme BU-1 multi-sensor signal transduction histidine kinase YP_002018302.1 1496075 R 324925 CDS YP_002018303.1 194336509 6462471 complement(1498696..1500558) 1 NC_011060.1 PFAM: AAA-4 family protein; KEGG: lpn:lpg2559 ATP-dependent DNA helicase; transcriptional regulator 1500558 6462471 Ppha_1428 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002018303.1 1498696 R 324925 CDS YP_002018304.1 194336510 6463583 1501819..1502139 1 NC_011060.1 KEGG: cho:Chro.40191 hypothetical protein; hypothetical protein 1502139 6463583 Ppha_1430 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018304.1 1501819 D 324925 CDS YP_002018305.1 194336511 6463582 complement(1502248..1502685) 1 NC_011060.1 KEGG: cph:Cpha266_1359 hypothetical protein; hypothetical protein 1502685 6463582 Ppha_1431 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018305.1 1502248 R 324925 CDS YP_002018306.1 194336512 6463581 complement(1502841..1504571) 1 NC_011060.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: cch:Cag_0770 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 1504571 6463581 Ppha_1432 Pelodictyon phaeoclathratiforme BU-1 exodeoxyribonuclease V subunit alpha YP_002018306.1 1502841 R 324925 CDS YP_002018307.1 194336513 6463580 complement(1504575..1508174) 1 NC_011060.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: cch:Cag_0769 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta 1508174 6463580 Ppha_1433 Pelodictyon phaeoclathratiforme BU-1 exodeoxyribonuclease V subunit beta YP_002018307.1 1504575 R 324925 CDS YP_002018308.1 194336514 6461371 complement(1508171..1511377) 1 NC_011060.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: cch:Cag_0763 exodeoxyribonuclease V, RecC subunit; exodeoxyribonuclease V subunit gamma 1511377 6461371 Ppha_1434 Pelodictyon phaeoclathratiforme BU-1 exodeoxyribonuclease V subunit gamma YP_002018308.1 1508171 R 324925 CDS YP_002018309.1 194336515 6463579 complement(1511367..1512686) 1 NC_011060.1 KEGG: cph:Cpha266_1127 hypothetical protein; hypothetical protein 1512686 6463579 Ppha_1435 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018309.1 1511367 R 324925 CDS YP_002018310.1 194336516 6463578 complement(1512689..1514764) 1 NC_011060.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1126 ATP-dependent DNA helicase RecQ; DEAD/DEAH box helicase 1514764 6463578 Ppha_1436 Pelodictyon phaeoclathratiforme BU-1 DEAD/DEAH box helicase YP_002018310.1 1512689 R 324925 CDS YP_002018311.1 194336517 6463576 complement(1515046..1515687) 1 NC_011060.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1144 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase 1515687 6463576 Ppha_1437 Pelodictyon phaeoclathratiforme BU-1 HAD-superfamily hydrolase YP_002018311.1 1515046 R 324925 CDS YP_002018312.1 194336518 6463574 complement(1516053..1516493) 1 NC_011060.1 PFAM: protein of unknown function DUF307; KEGG: mag:amb4030 predicted membrane protein; hypothetical protein 1516493 6463574 Ppha_1439 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018312.1 1516053 R 324925 CDS YP_002018313.1 194336519 6463573 complement(1516575..1517051) 1 NC_011060.1 KEGG: rba:RB11160 hypothetical protein; hypothetical protein 1517051 6463573 Ppha_1440 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018313.1 1516575 R 324925 CDS YP_002018314.1 194336520 6463572 1517294..1517503 1 NC_011060.1 PFAM: protein of unknown function UPF0150; KEGG: mar:MAE_44020 hypothetical protein; hypothetical protein 1517503 6463572 Ppha_1441 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018314.1 1517294 D 324925 CDS YP_002018315.1 194336521 6463570 complement(1517515..1518054) 1 NC_011060.1 KEGG: cph:Cpha266_1151 transcriptional regulator; transcriptional regulator 1518054 6463570 Ppha_1442 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002018315.1 1517515 R 324925 CDS YP_002018316.1 194336522 6463569 complement(1518152..1518430) 1 NC_011060.1 TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: fjo:Fjoh_0231 addiction module toxin, Txe/YoeB family; Txe/YoeB family addiction module toxin 1518430 6463569 Ppha_1443 Pelodictyon phaeoclathratiforme BU-1 Txe/YoeB family addiction module toxin YP_002018316.1 1518152 R 324925 CDS YP_002018317.1 194336523 6463567 complement(1518430..1518690) 1 NC_011060.1 KEGG: cch:Cag_1210 hypothetical protein; hypothetical protein 1518690 6463567 Ppha_1444 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018317.1 1518430 R 324925 CDS YP_002018318.1 194336524 6463561 complement(1519430..1520287) 1 NC_011060.1 KEGG: cph:Cpha266_1152 prophage antirepressor; prophage antirepressor 1520287 6463561 Ppha_1447 Pelodictyon phaeoclathratiforme BU-1 prophage antirepressor YP_002018318.1 1519430 R 324925 CDS YP_002018319.1 194336525 6463560 complement(1520529..1522028) 1 NC_011060.1 PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0507 divergent AAA ATPase; transcriptional regulator 1522028 6463560 Ppha_1448 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002018319.1 1520529 R 324925 CDS YP_002018320.1 194336526 6463559 complement(1522099..1522371) 1 NC_011060.1 KEGG: cph:Cpha266_1142 hypothetical protein; hypothetical protein 1522371 6463559 Ppha_1449 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018320.1 1522099 R 324925 CDS YP_002018321.1 194336527 6463558 complement(1522472..1523560) 1 NC_011060.1 KEGG: tcx:Tcr_0366 TIR; hypothetical protein 1523560 6463558 Ppha_1450 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018321.1 1522472 R 324925 CDS YP_002018322.1 194336528 6463557 complement(1523557..1523718) 1 NC_011060.1 hypothetical protein 1523718 6463557 Ppha_1451 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018322.1 1523557 R 324925 CDS YP_002018323.1 194336529 6463556 complement(1523718..1524896) 1 NC_011060.1 PFAM: restriction modification system DNA specificity domain; KEGG: cch:Cag_1526 restriction endonuclease S subunits-like; restriction modification system DNA specificity domain 1524896 6463556 Ppha_1452 Pelodictyon phaeoclathratiforme BU-1 restriction modification system DNA specificity domain YP_002018323.1 1523718 R 324925 CDS YP_002018324.1 194336530 6463554 complement(1524893..1525084) 1 NC_011060.1 hypothetical protein 1525084 6463554 Ppha_1453 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018324.1 1524893 R 324925 CDS YP_002018325.1 194336531 6463553 complement(1525081..1526742) 1 NC_011060.1 PFAM: RNA methylase; N-6 DNA methylase; KEGG: cph:Cpha266_1130 N-6 DNA methylase; N-6 DNA methylase 1526742 6463553 Ppha_1454 Pelodictyon phaeoclathratiforme BU-1 N-6 DNA methylase YP_002018325.1 1525081 R 324925 CDS YP_002018326.1 194336532 6463551 complement(1526746..1528134) 1 NC_011060.1 PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1129 transcriptional regulator; transcriptional regulator 1528134 6463551 Ppha_1455 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002018326.1 1526746 R 324925 CDS YP_002018327.1 194336533 6463550 complement(1528136..1530934) 1 NC_011060.1 PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1128 type III restriction enzyme, res subunit; type III restriction protein res subunit 1530934 6463550 Ppha_1456 Pelodictyon phaeoclathratiforme BU-1 type III restriction protein res subunit YP_002018327.1 1528136 R 324925 CDS YP_002018328.1 194336534 6463549 complement(1531323..1531877) 1 NC_011060.1 PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL; PEBP family protein 1531877 6463549 Ppha_1458 Pelodictyon phaeoclathratiforme BU-1 PEBP family protein YP_002018328.1 1531323 R 324925 CDS YP_002018329.1 194336535 6463548 complement(1532024..1535539) 1 NC_011060.1 PFAM: SMC domain protein; KEGG: cch:Cag_1092 hypothetical protein; SMC domain-containing protein 1535539 6463548 Ppha_1459 Pelodictyon phaeoclathratiforme BU-1 SMC domain-containing protein YP_002018329.1 1532024 R 324925 CDS YP_002018330.1 194336536 6463547 complement(1535529..1536788) 1 NC_011060.1 PFAM: metallophosphoesterase; KEGG: cch:Cag_1093 exonuclease; metallophosphoesterase 1536788 6463547 Ppha_1460 Pelodictyon phaeoclathratiforme BU-1 metallophosphoesterase YP_002018330.1 1535529 R 324925 CDS YP_002018331.1 194336537 6463546 complement(1536862..1537836) 1 NC_011060.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 1537836 6463546 Ppha_1461 Pelodictyon phaeoclathratiforme BU-1 6-phosphofructokinase YP_002018331.1 1536862 R 324925 CDS YP_002018332.1 194336538 6463544 1538375..1541128 1 NC_011060.1 KEGG: mth:MTH632 hypothetical protein; hypothetical protein 1541128 6463544 Ppha_1462 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018332.1 1538375 D 324925 CDS YP_002018333.1 194336539 6463543 1541377..1543284 1 NC_011060.1 KEGG: pin:Ping_0257 hypothetical protein; hypothetical protein 1543284 6463543 Ppha_1463 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018333.1 1541377 D 324925 CDS YP_002018334.1 194336540 6463542 1543372..1545027 1 NC_011060.1 KEGG: bxe:Bxe_C1257 hypothetical protein; hypothetical protein 1545027 6463542 Ppha_1464 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018334.1 1543372 D 324925 CDS YP_002018335.1 194336541 6463539 complement(1545622..1546245) 1 NC_011060.1 KEGG: mma:MM_3344 transposase; transposase 1546245 6463539 Ppha_1466 Pelodictyon phaeoclathratiforme BU-1 transposase YP_002018335.1 1545622 R 324925 CDS YP_002018336.1 194336542 6463538 complement(1546281..1546754) 1 NC_011060.1 KEGG: cph:Cpha266_1478 transposase; transposase 1546754 6463538 Ppha_1467 Pelodictyon phaeoclathratiforme BU-1 transposase YP_002018336.1 1546281 R 324925 CDS YP_002018337.1 194336543 6463537 complement(1546997..1548250) 1 NC_011060.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rso:RSc0827 hypothetical protein; hypothetical protein 1548250 6463537 Ppha_1468 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018337.1 1546997 R 324925 CDS YP_002018338.1 194336544 6463535 complement(1548271..1548981) 1 NC_011060.1 KEGG: pmn:PMN2A_0955 hypothetical protein; hypothetical protein 1548981 6463535 Ppha_1469 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018338.1 1548271 R 324925 CDS YP_002018339.1 194336545 6463533 complement(1548987..1551248) 1 NC_011060.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: fre:Franean1_5335 peptidase C14 caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 1551248 6463533 Ppha_1470 Pelodictyon phaeoclathratiforme BU-1 peptidase C14 caspase catalytic subunit p20 YP_002018339.1 1548987 R 324925 CDS YP_002018340.1 194336546 6463532 complement(1551720..1555571) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A3708 hypothetical protein; hypothetical protein 1555571 6463532 Ppha_1471 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018340.1 1551720 R 324925 CDS YP_002018341.1 194336547 6463528 complement(1556189..1556617) 1 NC_011060.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cch:Cag_0397 protein tyrosine phosphatase; protein tyrosine phosphatase 1556617 6463528 Ppha_1473 Pelodictyon phaeoclathratiforme BU-1 protein tyrosine phosphatase YP_002018341.1 1556189 R 324925 CDS YP_002018342.1 194336548 6463527 complement(1556738..1557799) 1 NC_011060.1 PFAM: permease; KEGG: cph:Cpha266_0464 permease; permease 1557799 6463527 Ppha_1474 Pelodictyon phaeoclathratiforme BU-1 permease YP_002018342.1 1556738 R 324925 CDS YP_002018343.1 194336549 6463526 complement(1557860..1558159) 1 NC_011060.1 TIGRFAM: redox-active disulfide protein 2; KEGG: cch:Cag_0399 redox-active disulfide protein 2; redox-active disulfide protein 2 1558159 6463526 Ppha_1475 Pelodictyon phaeoclathratiforme BU-1 redox-active disulfide protein 2 YP_002018343.1 1557860 R 324925 CDS YP_002018344.1 194336550 6463523 complement(1558212..1558547) 1 NC_011060.1 PFAM: regulatory protein ArsR; KEGG: cch:Cag_0425 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1558547 6463523 Ppha_1476 Pelodictyon phaeoclathratiforme BU-1 ArsR family transcriptional regulator YP_002018344.1 1558212 R 324925 CDS YP_002018345.1 194336551 6463522 complement(1558744..1559163) 1 NC_011060.1 KEGG: cch:Cag_0916 C-type cytochrome; C-type cytochrome 1559163 6463522 Ppha_1477 Pelodictyon phaeoclathratiforme BU-1 C-type cytochrome YP_002018345.1 1558744 R 324925 CDS YP_002018346.1 194336552 6463521 1559451..1559678 1 NC_011060.1 KEGG: cph:Cpha266_2705 hypothetical protein; hypothetical protein 1559678 6463521 Ppha_1478 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018346.1 1559451 D 324925 CDS YP_002018347.1 194336553 6463519 1560181..1560489 1 NC_011060.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1407 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 1560489 6463519 Ppha_1480 Pelodictyon phaeoclathratiforme BU-1 XRE family plasmid maintenance system antidote protein YP_002018347.1 1560181 D 324925 CDS YP_002018348.1 194336554 6463518 complement(1560497..1561804) 1 NC_011060.1 PFAM: protein of unknown function DUF195; KEGG: cph:Cpha266_1053 protein of unknown function DUF195; hypothetical protein 1561804 6463518 Ppha_1481 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018348.1 1560497 R 324925 CDS YP_002018349.1 194336555 6463515 complement(1562065..1563222) 1 NC_011060.1 PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cch:Cag_1114 DegT/DnrJ/EryC1/StrS family protein; DegT/DnrJ/EryC1/StrS aminotransferase 1563222 6463515 Ppha_1482 Pelodictyon phaeoclathratiforme BU-1 DegT/DnrJ/EryC1/StrS aminotransferase YP_002018349.1 1562065 R 324925 CDS YP_002018350.1 194336556 6463514 complement(1563246..1564376) 1 NC_011060.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cch:Cag_1128 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1564376 6463514 Ppha_1483 Pelodictyon phaeoclathratiforme BU-1 iron-containing alcohol dehydrogenase YP_002018350.1 1563246 R 324925 CDS YP_002018351.1 194336557 6463512 complement(1564390..1565103) 1 NC_011060.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cph:Cpha266_1514 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 1565103 6463512 Ppha_1484 Pelodictyon phaeoclathratiforme BU-1 acylneuraminate cytidylyltransferase YP_002018351.1 1564390 R 324925 CDS YP_002018352.1 194336558 6463513 complement(1565125..1566081) 1 NC_011060.1 KEGG: cph:Cpha266_1515 hypothetical protein; hypothetical protein 1566081 6463513 Ppha_1485 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018352.1 1565125 R 324925 CDS YP_002018353.1 194336559 6463511 complement(1566078..1567133) 1 NC_011060.1 KEGG: cph:Cpha266_1516 hypothetical protein; hypothetical protein 1567133 6463511 Ppha_1486 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018353.1 1566078 R 324925 CDS YP_002018354.1 194336560 6463508 1567349..1569181 1 NC_011060.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_1519 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1569181 6463508 Ppha_1487 Pelodictyon phaeoclathratiforme BU-1 AMP-dependent synthetase and ligase YP_002018354.1 1567349 D 324925 CDS YP_002018355.1 194336561 6463507 complement(1569307..1570143) 1 NC_011060.1 PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: cph:Cpha266_1520 HhH-GPD family protein; HhH-GPD family protein 1570143 6463507 Ppha_1488 Pelodictyon phaeoclathratiforme BU-1 HhH-GPD family protein YP_002018355.1 1569307 R 324925 CDS YP_002018356.1 194336562 6463506 complement(1570331..1570693) 1 NC_011060.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1570693 rplS 6463506 rplS Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L19 YP_002018356.1 1570331 R 324925 CDS YP_002018357.1 194336563 6463505 complement(1570706..1571452) 1 NC_011060.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1571452 trmD 6463505 trmD Pelodictyon phaeoclathratiforme BU-1 tRNA (guanine-N(1)-)-methyltransferase YP_002018357.1 1570706 R 324925 CDS YP_002018358.1 194336564 6463504 complement(1571453..1571974) 1 NC_011060.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cph:Cpha266_1523 16S rRNA processing protein RimM; 16S rRNA processing protein RimM 1571974 6463504 Ppha_1491 Pelodictyon phaeoclathratiforme BU-1 16S rRNA processing protein RimM YP_002018358.1 1571453 R 324925 CDS YP_002018359.1 194336565 6463503 complement(1571981..1572391) 1 NC_011060.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1572391 rpsP 6463503 rpsP Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S16 YP_002018359.1 1571981 R 324925 CDS YP_002018360.1 194336566 6463502 complement(1572440..1573789) 1 NC_011060.1 KEGG: cch:Cag_0805 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1573789 6463502 Ppha_1493 Pelodictyon phaeoclathratiforme BU-1 signal recognition particle protein YP_002018360.1 1572440 R 324925 CDS YP_002018361.1 194336567 6463500 1573952..1574938 1 NC_011060.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pvi:Cvib_0937 RfaE bifunctional protein; rfaE bifunctional protein 1574938 6463500 Ppha_1494 Pelodictyon phaeoclathratiforme BU-1 rfaE bifunctional protein YP_002018361.1 1573952 D 324925 CDS YP_002018362.1 194336568 6463498 complement(1574907..1575545) 1 NC_011060.1 KEGG: cph:Cpha266_1527 hypothetical protein; hypothetical protein 1575545 6463498 Ppha_1495 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018362.1 1574907 R 324925 CDS YP_002018363.1 194336569 6463497 complement(1575596..1576252) 1 NC_011060.1 PFAM: cyclase/dehydrase; KEGG: cph:Cpha266_1528 cyclase/dehydrase; cyclase/dehydrase 1576252 6463497 Ppha_1496 Pelodictyon phaeoclathratiforme BU-1 cyclase/dehydrase YP_002018363.1 1575596 R 324925 CDS YP_002018364.1 194336570 6463495 complement(1576299..1577969) 1 NC_011060.1 KEGG: cch:Cag_0813 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1577969 6463495 Ppha_1497 Pelodictyon phaeoclathratiforme BU-1 carboxyl-terminal protease YP_002018364.1 1576299 R 324925 CDS YP_002018365.1 194336571 6463494 complement(1578743..1579225) 1 NC_011060.1 PFAM: Endoribonuclease L-PSP; KEGG: cph:Cpha266_1530 endoribonuclease L-PSP; endoribonuclease L-PSP 1579225 6463494 Ppha_1498 Pelodictyon phaeoclathratiforme BU-1 endoribonuclease L-PSP YP_002018365.1 1578743 R 324925 CDS YP_002018366.1 194336572 6463492 1579407..1580054 1 NC_011060.1 PFAM: thiamine monophosphate synthase; KEGG: cph:Cpha266_1531 thiamine monophosphate synthase; thiamine monophosphate synthase 1580054 6463492 Ppha_1499 Pelodictyon phaeoclathratiforme BU-1 thiamine monophosphate synthase YP_002018366.1 1579407 D 324925 CDS YP_002018367.1 194336573 6463490 1580051..1580674 1 NC_011060.1 KEGG: pvi:Cvib_0943 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 1580674 6463490 Ppha_1500 Pelodictyon phaeoclathratiforme BU-1 thiamine-phosphate pyrophosphorylase YP_002018367.1 1580051 D 324925 CDS YP_002018368.1 194336574 6463489 1580671..1581486 1 NC_011060.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cch:Cag_0817 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1581486 6463489 Ppha_1501 Pelodictyon phaeoclathratiforme BU-1 phosphomethylpyrimidine kinase YP_002018368.1 1580671 D 324925 CDS YP_002018369.1 194336575 6463488 complement(1581488..1582825) 1 NC_011060.1 KEGG: plt:Plut_0956 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1582825 6463488 Ppha_1502 Pelodictyon phaeoclathratiforme BU-1 nucleotide sugar dehydrogenase YP_002018369.1 1581488 R 324925 CDS YP_002018370.1 194336576 6462237 complement(1582865..1583716) 1 NC_011060.1 KEGG: cph:Cpha266_1535 hypothetical protein; hypothetical protein 1583716 6462237 Ppha_1503 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018370.1 1582865 R 324925 CDS YP_002018371.1 194336577 6461924 complement(1583698..1584402) 1 NC_011060.1 KEGG: cph:Cpha266_1536 hypothetical protein; hypothetical protein 1584402 6461924 Ppha_1504 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018371.1 1583698 R 324925 CDS YP_002018372.1 194336578 6463487 complement(1584457..1585968) 1 NC_011060.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1585968 6463487 Ppha_1505 Pelodictyon phaeoclathratiforme BU-1 leucyl aminopeptidase YP_002018372.1 1584457 R 324925 CDS YP_002018373.1 194336579 6463486 complement(1586001..1587059) 1 NC_011060.1 PFAM: phosphoesterase RecJ domain protein; KEGG: plt:Plut_0953 Dhh family protein; phosphoesterase RecJ domain-containing protein 1587059 6463486 Ppha_1506 Pelodictyon phaeoclathratiforme BU-1 phosphoesterase RecJ domain-containing protein YP_002018373.1 1586001 R 324925 CDS YP_002018374.1 194336580 6463484 complement(1587075..1587218) 1 NC_011060.1 hypothetical protein 1587218 6463484 Ppha_1507 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018374.1 1587075 R 324925 CDS YP_002018375.1 194336581 6463483 1587592..1588671 1 NC_011060.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM protein; KEGG: pvi:Cvib_0950 radical SAM enzyme, Cfr family; radical SAM enzyme, Cfr family 1588671 6463483 Ppha_1508 Pelodictyon phaeoclathratiforme BU-1 radical SAM enzyme, Cfr family YP_002018375.1 1587592 D 324925 CDS YP_002018376.1 194336582 6463482 1588693..1589478 1 NC_011060.1 KEGG: cph:Cpha266_1540 hypothetical protein; hypothetical protein 1589478 6463482 Ppha_1509 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018376.1 1588693 D 324925 CDS YP_002018377.1 194336583 6463481 1589490..1590146 1 NC_011060.1 PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: cph:Cpha266_1541 adenylate kinase; Nucleoside-triphosphate--adenylate kinase 1590146 6463481 Ppha_1510 Pelodictyon phaeoclathratiforme BU-1 Nucleoside-triphosphate--adenylate kinase YP_002018377.1 1589490 D 324925 CDS YP_002018378.1 194336584 6463479 1590221..1592659 1 NC_011060.1 KEGG: cch:Cag_0828 primosomal protein N; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 1592659 6463479 Ppha_1511 Pelodictyon phaeoclathratiforme BU-1 primosomal protein N' YP_002018378.1 1590221 D 324925 CDS YP_002018379.1 194336585 6463478 complement(1592755..1593141) 1 NC_011060.1 KEGG: cte:CT0487 hypothetical protein; hypothetical protein 1593141 6463478 Ppha_1512 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018379.1 1592755 R 324925 CDS YP_002018380.1 194336586 6463475 complement(1593425..1595308) 1 NC_011060.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: cph:Cpha266_1246 Cl-channel, voltage-gated family protein; chloride channel core protein 1595308 6463475 Ppha_1514 Pelodictyon phaeoclathratiforme BU-1 chloride channel core protein YP_002018380.1 1593425 R 324925 CDS YP_002018381.1 194336587 6463474 complement(1595450..1597138) 1 NC_011060.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1597138 pgi 6463474 pgi Pelodictyon phaeoclathratiforme BU-1 glucose-6-phosphate isomerase YP_002018381.1 1595450 R 324925 CDS YP_002018382.1 194336588 6463473 complement(1597171..1597566) 1 NC_011060.1 KEGG: plt:Plut_1162 anti-sigma regulatory factor (serine/threonine protein kinase); anti-sigma regulatory factor, serine/threonine protein kinase 1597566 6463473 Ppha_1516 Pelodictyon phaeoclathratiforme BU-1 anti-sigma regulatory factor, serine/threonine protein kinase YP_002018382.1 1597171 R 324925 CDS YP_002018383.1 194336589 6463470 1597859..1598521 1 NC_011060.1 KEGG: cph:Cpha266_1093 hypothetical protein; hypothetical protein 1598521 6463470 Ppha_1517 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018383.1 1597859 D 324925 CDS YP_002018384.1 194336590 6463468 complement(1598591..1599724) 1 NC_011060.1 KEGG: cch:Cag_1375 hypothetical protein; hypothetical protein 1599724 6463468 Ppha_1518 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018384.1 1598591 R 324925 CDS YP_002018385.1 194336591 6463466 complement(1599779..1600831) 1 NC_011060.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1600831 6463466 Ppha_1519 Pelodictyon phaeoclathratiforme BU-1 phospho-2-dehydro-3-deoxyheptonate aldolase YP_002018385.1 1599779 R 324925 CDS YP_002018386.1 194336592 6463465 1601127..1602707 1 NC_011060.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1602707 6463465 Ppha_1520 Pelodictyon phaeoclathratiforme BU-1 D-3-phosphoglycerate dehydrogenase YP_002018386.1 1601127 D 324925 CDS YP_002018387.1 194336593 6463461 complement(1602800..1603987) 1 NC_011060.1 KEGG: cch:Cag_1378 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 1603987 6463461 Ppha_1521 Pelodictyon phaeoclathratiforme BU-1 arsenite-activated ATPase ArsA YP_002018387.1 1602800 R 324925 CDS YP_002018388.1 194336594 6463459 complement(1604260..1605945) 1 NC_011060.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: cph:Cpha266_1087 lytic transglycosylase, catalytic; Lytic transglycosylase 1605945 6463459 Ppha_1522 Pelodictyon phaeoclathratiforme BU-1 Lytic transglycosylase YP_002018388.1 1604260 R 324925 CDS YP_002018389.1 194336595 6463457 complement(1606058..1606789) 1 NC_011060.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1606789 truA 6463457 truA Pelodictyon phaeoclathratiforme BU-1 tRNA pseudouridine synthase A YP_002018389.1 1606058 R 324925 CDS YP_002018390.1 194336596 6463454 1606873..1608783 1 NC_011060.1 KEGG: cch:Cag_1381 alpha-amylase family protein; alpha-amylase family protein 1608783 6463454 Ppha_1524 Pelodictyon phaeoclathratiforme BU-1 alpha-amylase family protein YP_002018390.1 1606873 D 324925 CDS YP_002018391.1 194336597 6463458 1608844..1609755 1 NC_011060.1 PFAM: PfkB domain protein; KEGG: pvi:Cvib_0779 PfkB domain protein; PfkB domain-containing protein 1609755 6463458 Ppha_1525 Pelodictyon phaeoclathratiforme BU-1 PfkB domain-containing protein YP_002018391.1 1608844 D 324925 CDS YP_002018392.1 194336598 6463453 1609795..1611555 1 NC_011060.1 PFAM: Na+/solute symporter; KEGG: cch:Cag_1384 sodium:solute symporter family protein; Na+/solute symporter 1611555 6463453 Ppha_1526 Pelodictyon phaeoclathratiforme BU-1 Na+/solute symporter YP_002018392.1 1609795 D 324925 CDS YP_002018393.1 194336599 6463450 1611567..1612145 1 NC_011060.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cch:Cag_1393 Maf-like protein; maf protein 1612145 6463450 Ppha_1527 Pelodictyon phaeoclathratiforme BU-1 maf protein YP_002018393.1 1611567 D 324925 CDS YP_002018394.1 194336600 6463449 1612329..1613291 1 NC_011060.1 PFAM: Alcohol dehydrogenase GroES domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: plt:Plut_0923 chlorobiumquinone synthase BchC related protein; Alcohol dehydrogenase GroES domain-containing protein 1613291 6463449 Ppha_1528 Pelodictyon phaeoclathratiforme BU-1 Alcohol dehydrogenase GroES domain-containing protein YP_002018394.1 1612329 D 324925 CDS YP_002018395.1 194336601 6463445 1613312..1614853 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase; ABC transporter-like protein 1614853 6463445 Ppha_1529 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018395.1 1613312 D 324925 CDS YP_002018396.1 194336602 6463443 1614869..1615906 1 NC_011060.1 PFAM: inner-membrane translocator; KEGG: cch:Cag_1499 membrane protein; inner-membrane translocator 1615906 6463443 Ppha_1530 Pelodictyon phaeoclathratiforme BU-1 inner-membrane translocator YP_002018396.1 1614869 D 324925 CDS YP_002018397.1 194336603 6463440 1615999..1616199 1 NC_011060.1 KEGG: cph:Cpha266_0991 hypothetical protein; hypothetical protein 1616199 6463440 Ppha_1531 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018397.1 1615999 D 324925 CDS YP_002018398.1 194336604 6463437 1616263..1616436 1 NC_011060.1 KEGG: cch:Cag_1501 hypothetical protein; hypothetical protein 1616436 6463437 Ppha_1532 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018398.1 1616263 D 324925 CDS YP_002018399.1 194336605 6463435 complement(1616443..1617177) 1 NC_011060.1 PFAM: PASTA domain containing protein; KEGG: cph:Cpha266_0989 PASTA domain containing protein; PASTA domain-containing protein 1617177 6463435 Ppha_1533 Pelodictyon phaeoclathratiforme BU-1 PASTA domain-containing protein YP_002018399.1 1616443 R 324925 CDS YP_002018400.1 194336606 6463434 complement(1617249..1618223) 1 NC_011060.1 PFAM: Polyprenyl synthetase; KEGG: cch:Cag_0963 polyprenyl synthetase; polyprenyl synthetase 1618223 6463434 Ppha_1534 Pelodictyon phaeoclathratiforme BU-1 polyprenyl synthetase YP_002018400.1 1617249 R 324925 CDS YP_002018401.1 194336607 6463427 1618507..1619349 1 NC_011060.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pvi:Cvib_0974 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 1619349 6463427 Ppha_1535 Pelodictyon phaeoclathratiforme BU-1 Sec-independent protein translocase subunit TatC YP_002018401.1 1618507 D 324925 CDS YP_002018402.1 194336608 6463425 1619346..1620371 1 NC_011060.1 PFAM: esterase; KEGG: pvi:Cvib_0975 esterase; esterase 1620371 6463425 Ppha_1536 Pelodictyon phaeoclathratiforme BU-1 esterase YP_002018402.1 1619346 D 324925 CDS YP_002018403.1 194336609 6463424 complement(1620351..1620998) 1 NC_011060.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1620998 coaE 6463424 coaE Pelodictyon phaeoclathratiforme BU-1 dephospho-CoA kinase YP_002018403.1 1620351 R 324925 CDS YP_002018404.1 194336610 6463416 complement(1620995..1621342) 1 NC_011060.1 KEGG: plt:Plut_1223 hypothetical protein; hypothetical protein 1621342 6463416 Ppha_1538 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018404.1 1620995 R 324925 CDS YP_002018405.1 194336611 6463414 1621498..1622100 1 NC_011060.1 PFAM: manganese and iron superoxide dismutase; KEGG: pvi:Cvib_0978 superoxide dismutase; superoxide dismutase 1622100 6463414 Ppha_1539 Pelodictyon phaeoclathratiforme BU-1 superoxide dismutase YP_002018405.1 1621498 D 324925 CDS YP_002018406.1 194336612 6463413 complement(1622191..1623048) 1 NC_011060.1 KEGG: cch:Cag_0800 hypothetical protein; hypothetical protein 1623048 6463413 Ppha_1540 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018406.1 1622191 R 324925 CDS YP_002018407.1 194336613 6463410 1623279..1624460 1 NC_011060.1 PFAM: Protein of unknown function methylase KEGG: cch:Cag_0756 hypothetical protein; hypothetical protein 1624460 6463410 Ppha_1541 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018407.1 1623279 D 324925 CDS YP_002018408.1 194336614 6463409 complement(1624577..1624750) 1 NC_011060.1 KEGG: cte:CT1217 hypothetical protein; hypothetical protein 1624750 6463409 Ppha_1542 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018408.1 1624577 R 324925 CDS YP_002018409.1 194336615 6463407 complement(1624846..1627518) 1 NC_011060.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cph:Cpha266_0173 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase 1627518 6463407 Ppha_1543 Pelodictyon phaeoclathratiforme BU-1 P-type HAD superfamily ATPase YP_002018409.1 1624846 R 324925 CDS YP_002018410.1 194336616 6463401 complement(1628084..1629019) 1 NC_011060.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_1151 thioredoxin reductase; thioredoxin reductase 1629019 6463401 Ppha_1544 Pelodictyon phaeoclathratiforme BU-1 thioredoxin reductase YP_002018410.1 1628084 R 324925 CDS YP_002018411.1 194336617 6463400 complement(1629106..1629438) 1 NC_011060.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pvi:Cvib_1012 thioredoxin; thioredoxin 1629438 6463400 Ppha_1545 Pelodictyon phaeoclathratiforme BU-1 thioredoxin YP_002018411.1 1629106 R 324925 CDS YP_002018412.1 194336618 6463399 complement(1629858..1630202) 1 NC_011060.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: pvi:Cvib_1012 thioredoxin; thioredoxin 1630202 6463399 Ppha_1546 Pelodictyon phaeoclathratiforme BU-1 thioredoxin YP_002018412.1 1629858 R 324925 CDS YP_002018413.1 194336619 6463395 complement(1630294..1633863) 1 NC_011060.1 KEGG: cph:Cpha266_1195 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1633863 6463395 Ppha_1547 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase III subunit alpha YP_002018413.1 1630294 R 324925 CDS YP_002018414.1 194336620 6463394 complement(1634317..1635408) 1 NC_011060.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: cph:Cpha266_1951 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 1635408 6463394 Ppha_1548 Pelodictyon phaeoclathratiforme BU-1 XRE family plasmid maintenance system antidote protein YP_002018414.1 1634317 R 324925 CDS YP_002018415.1 194336621 6463392 complement(1635411..1635752) 1 NC_011060.1 PFAM: plasmid maintenance system killer; KEGG: sfu:Sfum_1442 killer suppression protein HigA; plasmid maintenance system killer protein 1635752 6463392 Ppha_1549 Pelodictyon phaeoclathratiforme BU-1 plasmid maintenance system killer protein YP_002018415.1 1635411 R 324925 CDS YP_002018416.1 194336622 6463391 complement(1635862..1638231) 1 NC_011060.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cph:Cpha266_1194 kojibiose phosphorylase; Kojibiose phosphorylase 1638231 6463391 Ppha_1550 Pelodictyon phaeoclathratiforme BU-1 Kojibiose phosphorylase YP_002018416.1 1635862 R 324925 CDS YP_002018417.1 194336623 6463388 1638528..1639727 1 NC_011060.1 PFAM: leucine-rich repeat protein; KEGG: cph:Cpha266_1193 internalin-related protein; hypothetical protein 1639727 6463388 Ppha_1551 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018417.1 1638528 D 324925 CDS YP_002018418.1 194336624 6463385 complement(1639834..1640433) 1 NC_011060.1 KEGG: cph:Cpha266_0645 hypothetical protein; hypothetical protein 1640433 6463385 Ppha_1552 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018418.1 1639834 R 324925 CDS YP_002018419.1 194336625 6463381 complement(1640685..1643756) 1 NC_011060.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; signal transduction protein with Nacht domain 1643756 6463381 Ppha_1553 Pelodictyon phaeoclathratiforme BU-1 signal transduction protein with Nacht domain YP_002018419.1 1640685 R 324925 CDS YP_002018420.1 194336626 6463379 complement(1643842..1644219) 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: neu:NE2174 hypothetical protein; PilT protein domain-containing protein 1644219 6463379 Ppha_1554 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002018420.1 1643842 R 324925 CDS YP_002018421.1 194336627 6463380 complement(1644206..1644427) 1 NC_011060.1 KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein 1644427 6463380 Ppha_1555 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018421.1 1644206 R 324925 CDS YP_002018422.1 194336628 6462136 complement(1644499..1645290) 1 NC_011060.1 KEGG: cph:Cpha266_0460 protein of unknown function DUF323; hypothetical protein 1645290 6462136 Ppha_1556 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018422.1 1644499 R 324925 CDS YP_002018423.1 194336629 6463376 complement(1645287..1646594) 1 NC_011060.1 PFAM: HipA domain protein; KEGG: bxe:Bxe_B2229 hypothetical protein; HipA domain-containing protein 1646594 6463376 Ppha_1557 Pelodictyon phaeoclathratiforme BU-1 HipA domain-containing protein YP_002018423.1 1645287 R 324925 CDS YP_002018424.1 194336630 6463374 complement(1646591..1646935) 1 NC_011060.1 SMART: helix-turn-helix domain protein; KEGG: bpt:Bpet1353 DNA-binding protein; XRE family transcriptional regulator 1646935 6463374 Ppha_1558 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018424.1 1646591 R 324925 CDS YP_002018425.1 194336631 6463361 complement(1647426..1647650) 1 NC_011060.1 KEGG: mar:MAE_07660 hypothetical protein; hypothetical protein 1647650 6463361 Ppha_1561 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018425.1 1647426 R 324925 CDS YP_002018426.1 194336632 6463360 complement(1648007..1651141) 1 NC_011060.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1299 protein of unknown function DUF323; signal transduction protein with Nacht domain 1651141 6463360 Ppha_1562 Pelodictyon phaeoclathratiforme BU-1 signal transduction protein with Nacht domain YP_002018426.1 1648007 R 324925 CDS YP_002018427.1 194336633 6463357 1651513..1653030 1 NC_011060.1 PFAM: protein of unknown function DUF1703; KEGG: cch:Cag_1721 hypothetical protein; hypothetical protein 1653030 6463357 Ppha_1564 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018427.1 1651513 D 324925 CDS YP_002018428.1 194336634 6463354 complement(1653192..1656317) 1 NC_011060.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; signal transduction protein with Nacht domain 1656317 6463354 Ppha_1565 Pelodictyon phaeoclathratiforme BU-1 signal transduction protein with Nacht domain YP_002018428.1 1653192 R 324925 CDS YP_002018429.1 194336635 6463347 complement(1658015..1659940) 1 NC_011060.1 PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: cch:Cag_0859 oxaloacetate decarboxylase, alpha subunit; Oxaloacetate decarboxylase 1659940 6463347 Ppha_1568 Pelodictyon phaeoclathratiforme BU-1 Oxaloacetate decarboxylase YP_002018429.1 1658015 R 324925 CDS YP_002018430.1 194336636 6463345 complement(1659989..1661521) 1 NC_011060.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: cch:Cag_0860 Fe-S type hydro-lyase tartrate/fumarate alpha and beta region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha 1661521 6463345 Ppha_1569 Pelodictyon phaeoclathratiforme BU-1 Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha YP_002018430.1 1659989 R 324925 CDS YP_002018431.1 194336637 6463343 complement(1661569..1662033) 1 NC_011060.1 PFAM: UspA domain protein; KEGG: plt:Plut_1270 universal stress protein family; UspA domain-containing protein 1662033 6463343 Ppha_1570 Pelodictyon phaeoclathratiforme BU-1 UspA domain-containing protein YP_002018431.1 1661569 R 324925 CDS YP_002018432.1 194336638 6463342 1662223..1663845 1 NC_011060.1 KEGG: cch:Cag_0861 hypothetical protein; hypothetical protein 1663845 6463342 Ppha_1571 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018432.1 1662223 D 324925 CDS YP_002018433.1 194336639 6463341 complement(1663842..1664717) 1 NC_011060.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: cch:Cag_1070 hypothetical protein; hypothetical protein 1664717 6463341 Ppha_1572 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018433.1 1663842 R 324925 CDS YP_002018434.1 194336640 6463340 complement(1664751..1666637) 1 NC_011060.1 molecular chaperone; heat shock protein 90 1666637 6463340 Ppha_1573 Pelodictyon phaeoclathratiforme BU-1 heat shock protein 90 YP_002018434.1 1664751 R 324925 CDS YP_002018435.1 194336641 6463337 complement(1666707..1667576) 1 NC_011060.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: cch:Cag_1072 sialic acid synthase; N-acylneuraminate-9-phosphate synthase 1667576 6463337 Ppha_1574 Pelodictyon phaeoclathratiforme BU-1 N-acylneuraminate-9-phosphate synthase YP_002018435.1 1666707 R 324925 CDS YP_002018436.1 194336642 6463334 complement(1667656..1668174) 1 NC_011060.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: plt:Plut_1275 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1668174 6463334 Ppha_1575 Pelodictyon phaeoclathratiforme BU-1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002018436.1 1667656 R 324925 CDS YP_002018437.1 194336643 6463333 complement(1668190..1668378) 1 NC_011060.1 hypothetical protein 1668378 6463333 Ppha_1576 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018437.1 1668190 R 324925 CDS YP_002018438.1 194336644 6463330 complement(1668409..1668942) 1 NC_011060.1 PFAM: Inorganic pyrophosphatase; KEGG: plt:Plut_1277 inorganic diphosphatase; inorganic diphosphatase 1668942 6463330 Ppha_1577 Pelodictyon phaeoclathratiforme BU-1 inorganic diphosphatase YP_002018438.1 1668409 R 324925 CDS YP_002018439.1 194336645 6463329 complement(1669053..1670378) 1 NC_011060.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: cte:CT0822 sodium:alanine symporter family protein; amino acid carrier protein 1670378 6463329 Ppha_1578 Pelodictyon phaeoclathratiforme BU-1 amino acid carrier protein YP_002018439.1 1669053 R 324925 CDS YP_002018440.1 194336646 6463327 1670659..1672248 1 NC_011060.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cch:Cag_0946 peptide chain release factor 3; peptide chain release factor 3 1672248 6463327 Ppha_1579 Pelodictyon phaeoclathratiforme BU-1 peptide chain release factor 3 YP_002018440.1 1670659 D 324925 CDS YP_002018441.1 194336647 6463323 1672473..1674740 1 NC_011060.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cph:Cpha266_2532 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1674740 6463323 Ppha_1581 Pelodictyon phaeoclathratiforme BU-1 heavy metal translocating P-type ATPase YP_002018441.1 1672473 D 324925 CDS YP_002018442.1 194336648 6463319 complement(1674718..1675632) 1 NC_011060.1 PFAM: Domain of unknown function DUF1848; KEGG: cph:Cpha266_1022 hypothetical protein; hypothetical protein 1675632 6463319 Ppha_1582 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018442.1 1674718 R 324925 CDS YP_002018443.1 194336649 6463318 1675981..1676208 1 NC_011060.1 KEGG: cph:Cpha266_1681 hypothetical protein; hypothetical protein 1676208 6463318 Ppha_1583 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018443.1 1675981 D 324925 CDS YP_002018444.1 194336650 6463317 complement(1676261..1677727) 1 NC_011060.1 KEGG: cph:Cpha266_1680 Pep581 peptidase. Metallo peptidase. MEROPS family M20C; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 1677727 6463317 Ppha_1584 Pelodictyon phaeoclathratiforme BU-1 aminoacyl-histidine dipeptidase YP_002018444.1 1676261 R 324925 CDS YP_002018445.1 194336651 6463313 complement(1677839..1678372) 1 NC_011060.1 KEGG: cph:Cpha266_1686 hypothetical protein; hypothetical protein 1678372 6463313 Ppha_1585 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018445.1 1677839 R 324925 CDS YP_002018446.1 194336652 6463312 complement(1678518..1678883) 1 NC_011060.1 PFAM: Domain of unknown function DUF1801; KEGG: cph:Cpha266_1691 hypothetical protein; hypothetical protein 1678883 6463312 Ppha_1586 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018446.1 1678518 R 324925 CDS YP_002018447.1 194336653 6463311 complement(1679085..1682279) 1 NC_011060.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; hypothetical protein 1682279 6463311 Ppha_1587 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018447.1 1679085 R 324925 CDS YP_002018448.1 194336654 6463306 complement(1682309..1682725) 1 NC_011060.1 PFAM: protein of unknown function DUF86; KEGG: cph:Cpha266_0768 protein of unknown function DUF86; hypothetical protein 1682725 6463306 Ppha_1588 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018448.1 1682309 R 324925 CDS YP_002018449.1 194336655 6463303 complement(1682710..1683108) 1 NC_011060.1 PFAM: DNA polymerase beta domain protein region; KEGG: cph:Cpha266_0766 DNA polymerase, beta domain protein region; DNA polymerase beta domain-containing protein 1683108 6463303 Ppha_1589 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase beta domain-containing protein YP_002018449.1 1682710 R 324925 CDS YP_002018450.1 194336656 6463300 1683525..1684286 1 NC_011060.1 KEGG: cph:Cpha266_1424 nitroreductase; nitroreductase 1684286 6463300 Ppha_1590 Pelodictyon phaeoclathratiforme BU-1 nitroreductase YP_002018450.1 1683525 D 324925 CDS YP_002018451.1 194336657 6463299 complement(1684291..1684752) 1 NC_011060.1 PFAM: protein of unknown function DUF45; KEGG: mma:MM_2291 zinc metalloprotease; hypothetical protein 1684752 6463299 Ppha_1591 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018451.1 1684291 R 324925 CDS YP_002018452.1 194336658 6463295 complement(1685000..1685212) 1 NC_011060.1 PFAM: protein of unknown function UPF0150; KEGG: tbd:Tbd_1973 hypothetical protein; hypothetical protein 1685212 6463295 Ppha_1593 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018452.1 1685000 R 324925 CDS YP_002018453.1 194336659 6463294 complement(1685212..1685466) 1 NC_011060.1 KEGG: mar:MAE_00130 hypothetical protein; hypothetical protein 1685466 6463294 Ppha_1594 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018453.1 1685212 R 324925 CDS YP_002018454.1 194336660 6463293 1685746..1685979 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cph:Cpha266_1697 prevent-host-death family protein; prevent-host-death family protein 1685979 6463293 Ppha_1595 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002018454.1 1685746 D 324925 CDS YP_002018455.1 194336661 6463292 1686120..1686422 1 NC_011060.1 KEGG: cph:Cpha266_1700 hypothetical protein; hypothetical protein 1686422 6463292 Ppha_1596 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018455.1 1686120 D 324925 CDS YP_002018456.1 194336662 6463291 1686439..1686819 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1701 helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1686819 6463291 Ppha_1597 Pelodictyon phaeoclathratiforme BU-1 helix-turn-helix domain-containing protein YP_002018456.1 1686439 D 324925 CDS YP_002018457.1 194336663 6463287 complement(1687211..1688176) 1 NC_011060.1 KEGG: mms:mma_0495 hypothetical protein; hypothetical protein 1688176 6463287 Ppha_1599 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018457.1 1687211 R 324925 CDS YP_002018458.1 194336664 6463286 complement(1688489..1689544) 1 NC_011060.1 KEGG: cak:Caul_4682 hypothetical protein; hypothetical protein 1689544 6463286 Ppha_1600 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018458.1 1688489 R 324925 CDS YP_002018459.1 194336665 6463280 complement(1690805..1691161) 1 NC_011060.1 KEGG: tdn:Tmden_0480 hypothetical protein; hypothetical protein 1691161 6463280 Ppha_1602 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018459.1 1690805 R 324925 CDS YP_002018460.1 194336666 6463279 complement(1691266..1691484) 1 NC_011060.1 KEGG: cch:Cag_1049 hypothetical protein; hypothetical protein 1691484 6463279 Ppha_1603 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018460.1 1691266 R 324925 CDS YP_002018461.1 194336667 6463277 complement(1691529..1692284) 1 NC_011060.1 KEGG: mma:MM_2294 type I restriction-modification system specificity subunit; type I restriction-modification system specificity subunit 1692284 6463277 Ppha_1604 Pelodictyon phaeoclathratiforme BU-1 type I restriction-modification system specificity subunit YP_002018461.1 1691529 R 324925 CDS YP_002018462.1 194336668 6463273 1693263..1694093 1 NC_011060.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: cph:Cpha266_1254 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 1694093 6463273 Ppha_1607 Pelodictyon phaeoclathratiforme BU-1 peptidase C14 caspase catalytic subunit p20 YP_002018462.1 1693263 D 324925 CDS YP_002018463.1 194336669 6463272 1694426..1695118 1 NC_011060.1 PFAM: peptidase membrane zinc metallopeptidase KEGG: pvi:Cvib_1043 peptidase, membrane zinc metallopeptidase; peptidase membrane zinc metallopeptidase 1695118 6463272 Ppha_1608 Pelodictyon phaeoclathratiforme BU-1 peptidase membrane zinc metallopeptidase YP_002018463.1 1694426 D 324925 CDS YP_002018464.1 194336670 6463268 1695177..1696664 1 NC_011060.1 PFAM: amino acid permease-associated region; KEGG: plt:Plut_1308 amino acid permease; amino acid permease-associated protein 1696664 6463268 Ppha_1609 Pelodictyon phaeoclathratiforme BU-1 amino acid permease-associated protein YP_002018464.1 1695177 D 324925 CDS YP_002018465.1 194336671 6463262 1696679..1697377 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_1636 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1697377 6463262 Ppha_1610 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002018465.1 1696679 D 324925 CDS YP_002018466.1 194336672 6463261 1697435..1698088 1 NC_011060.1 PFAM: thymidylate kinase; KEGG: plt:Plut_1310 thymidylate kinase; dTMP kinase 1698088 6463261 Ppha_1611 Pelodictyon phaeoclathratiforme BU-1 dTMP kinase YP_002018466.1 1697435 D 324925 CDS YP_002018467.1 194336673 6463258 1698222..1699484 1 NC_011060.1 KEGG: cph:Cpha266_1639 hypothetical protein; hypothetical protein 1699484 6463258 Ppha_1612 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018467.1 1698222 D 324925 CDS YP_002018468.1 194336674 6463256 1699517..1702675 1 NC_011060.1 TIGRFAM: beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0927 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 1702675 6463256 Ppha_1613 Pelodictyon phaeoclathratiforme BU-1 beta-phosphoglucomutase family hydrolase YP_002018468.1 1699517 D 324925 CDS YP_002018469.1 194336675 6463254 1702779..1703819 1 NC_011060.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: plt:Plut_1313 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1703819 6463254 Ppha_1614 Pelodictyon phaeoclathratiforme BU-1 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase YP_002018469.1 1702779 D 324925 CDS YP_002018470.1 194336676 6463251 1703843..1704574 1 NC_011060.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cch:Cag_0929 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1704574 6463251 Ppha_1615 Pelodictyon phaeoclathratiforme BU-1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_002018470.1 1703843 D 324925 CDS YP_002018471.1 194336677 6463245 1704859..1705311 1 NC_011060.1 PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0930 phenylacetic acid degradation-related protein; thioesterase superfamily protein 1705311 6463245 Ppha_1616 Pelodictyon phaeoclathratiforme BU-1 thioesterase superfamily protein YP_002018471.1 1704859 D 324925 CDS YP_002018472.1 194336678 6463241 1705411..1706820 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1644 radical SAM protein; radical SAM protein 1706820 6463241 Ppha_1617 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002018472.1 1705411 D 324925 CDS YP_002018473.1 194336679 6463233 complement(1706963..1707196) 1 NC_011060.1 KEGG: cph:Cpha266_1649 hypothetical protein; hypothetical protein 1707196 6463233 Ppha_1619 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018473.1 1706963 R 324925 CDS YP_002018474.1 194336680 6463231 complement(1707460..1709265) 1 NC_011060.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1709265 aspS 6463231 aspS Pelodictyon phaeoclathratiforme BU-1 aspartyl-tRNA synthetase YP_002018474.1 1707460 R 324925 CDS YP_002018475.1 194336681 6463229 complement(1709365..1709880) 1 NC_011060.1 KEGG: cch:Cag_0933 DNA polymerase III, gamma/tau subunit; DNA polymerase III subunits gamma and tau 1709880 6463229 Ppha_1621 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase III subunits gamma and tau YP_002018475.1 1709365 R 324925 CDS YP_002018476.1 194336682 6463226 complement(1709940..1711145) 1 NC_011060.1 KEGG: cch:Cag_0934 ATPase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 1711145 6463226 Ppha_1622 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase III subunits gamma and tau YP_002018476.1 1709940 R 324925 CDS YP_002018477.1 194336683 6463225 complement(1711142..1712428) 1 NC_011060.1 PFAM: ribonuclease BN; KEGG: cph:Cpha266_1653 ribonuclease BN; ribonuclease BN 1712428 6463225 Ppha_1623 Pelodictyon phaeoclathratiforme BU-1 ribonuclease BN YP_002018477.1 1711142 R 324925 CDS YP_002018478.1 194336684 6463223 complement(1712494..1713759) 1 NC_011060.1 PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_1654 major facilitator superfamily MFS_1; major facilitator superfamily protein 1713759 6463223 Ppha_1624 Pelodictyon phaeoclathratiforme BU-1 major facilitator superfamily protein YP_002018478.1 1712494 R 324925 CDS YP_002018479.1 194336685 6463222 complement(1713765..1714469) 1 NC_011060.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 1714469 6463222 Ppha_1625 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylformylglycinamidine synthase I YP_002018479.1 1713765 R 324925 CDS YP_002018480.1 194336686 6463221 complement(1714483..1714743) 1 NC_011060.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: cch:Cag_0938 phosphoribosylformylglycinamidine synthetase PurS; phosphoribosylformylglycinamidine synthase PurS 1714743 6463221 Ppha_1626 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylformylglycinamidine synthase PurS YP_002018480.1 1714483 R 324925 CDS YP_002018481.1 194336687 6463217 complement(1714766..1715569) 1 NC_011060.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cch:Cag_0939 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 1715569 6463217 Ppha_1627 Pelodictyon phaeoclathratiforme BU-1 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_002018481.1 1714766 R 324925 CDS YP_002018482.1 194336688 6463215 complement(1716200..1717033) 1 NC_011060.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1717033 panB 6463215 panB Pelodictyon phaeoclathratiforme BU-1 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002018482.1 1716200 R 324925 CDS YP_002018483.1 194336689 6463213 complement(1717046..1717861) 1 NC_011060.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: cch:Cag_0906 lipoate-protein ligase A; biotin/lipoate A/B protein ligase 1717861 6463213 Ppha_1629 Pelodictyon phaeoclathratiforme BU-1 biotin/lipoate A/B protein ligase YP_002018483.1 1717046 R 324925 CDS YP_002018484.1 194336690 6463212 1718021..1718434 1 NC_011060.1 PFAM: CoA-binding domain protein; KEGG: plt:Plut_1330 hypothetical protein; CoA-binding domain-containing protein 1718434 6463212 Ppha_1630 Pelodictyon phaeoclathratiforme BU-1 CoA-binding domain-containing protein YP_002018484.1 1718021 D 324925 CDS YP_002018485.1 194336691 6463210 1718473..1719555 1 NC_011060.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1719555 ddl 6463210 ddl Pelodictyon phaeoclathratiforme BU-1 D-alanyl-alanine synthetase A YP_002018485.1 1718473 D 324925 CDS YP_002018486.1 194336692 6463208 1719552..1720127 1 NC_011060.1 KEGG: cch:Cag_0904 hypothetical protein; hypothetical protein 1720127 6463208 Ppha_1632 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018486.1 1719552 D 324925 CDS YP_002018487.1 194336693 6463206 1720231..1721643 1 NC_011060.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein; outer membrane efflux protein 1721643 6463206 Ppha_1633 Pelodictyon phaeoclathratiforme BU-1 outer membrane efflux protein YP_002018487.1 1720231 D 324925 CDS YP_002018488.1 194336694 6463202 1721640..1722893 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; RND family efflux transporter MFP subunit 1722893 6463202 Ppha_1634 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002018488.1 1721640 D 324925 CDS YP_002018489.1 194336695 6463201 1722901..1723590 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1335 ATPase; ABC transporter-like protein 1723590 6463201 Ppha_1635 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018489.1 1722901 D 324925 CDS YP_002018490.1 194336696 6463199 1723587..1724852 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214; hypothetical protein 1724852 6463199 Ppha_1636 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018490.1 1723587 D 324925 CDS YP_002018491.1 194336697 6463198 1724861..1726096 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214; hypothetical protein 1726096 6463198 Ppha_1637 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018491.1 1724861 D 324925 CDS YP_002018492.1 194336698 6463195 1726267..1726956 1 NC_011060.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: plt:Plut_1338 OmpA family protein; OmpA/MotB domain-containing protein 1726956 6463195 Ppha_1638 Pelodictyon phaeoclathratiforme BU-1 OmpA/MotB domain-containing protein YP_002018492.1 1726267 D 324925 CDS YP_002018493.1 194336699 6463191 1727087..1727533 1 NC_011060.1 KEGG: cph:Cpha266_1672 hypothetical protein; hypothetical protein 1727533 6463191 Ppha_1639 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018493.1 1727087 D 324925 CDS YP_002018494.1 194336700 6463190 1727620..1730283 1 NC_011060.1 PFAM: protein of unknown function DUF547; glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 1730283 6463190 Ppha_1640 Pelodictyon phaeoclathratiforme BU-1 glycoside hydrolase 15-like protein YP_002018494.1 1727620 D 324925 CDS YP_002018495.1 194336701 6463187 complement(1730299..1731351) 1 NC_011060.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: pvi:Cvib_0713 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1731351 6463187 Ppha_1641 Pelodictyon phaeoclathratiforme BU-1 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_002018495.1 1730299 R 324925 CDS YP_002018496.1 194336702 6463186 1731529..1732500 1 NC_011060.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1732500 6463186 Ppha_1642 Pelodictyon phaeoclathratiforme BU-1 ribose-phosphate pyrophosphokinase YP_002018496.1 1731529 D 324925 CDS YP_002018497.1 194336703 6463182 1732532..1733131 1 NC_011060.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1733131 6463182 Ppha_1643 Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L25/general stress protein Ctc YP_002018497.1 1732532 D 324925 CDS YP_002018498.1 194336704 6463181 1733251..1734708 1 NC_011060.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1676 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1734708 6463181 Ppha_1644 Pelodictyon phaeoclathratiforme BU-1 binding-protein-dependent transport system inner membrane protein YP_002018498.1 1733251 D 324925 CDS YP_002018499.1 194336705 6463179 complement(1734767..1735180) 1 NC_011060.1 KEGG: cph:Cpha266_0748 hypothetical protein; hypothetical protein 1735180 6463179 Ppha_1645 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018499.1 1734767 R 324925 CDS YP_002018500.1 194336706 6463176 complement(1735290..1737533) 1 NC_011060.1 PFAM: ComEC/Rec2-related protein; KEGG: cph:Cpha266_1722 ComEC/Rec2-related protein; ComEC/Rec2-like protein 1737533 6463176 Ppha_1646 Pelodictyon phaeoclathratiforme BU-1 ComEC/Rec2-like protein YP_002018500.1 1735290 R 324925 CDS YP_002018501.1 194336707 6463175 1737591..1738460 1 NC_011060.1 KEGG: cch:Cag_1108 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1738460 6463175 Ppha_1647 Pelodictyon phaeoclathratiforme BU-1 5,10-methylenetetrahydrofolate reductase YP_002018501.1 1737591 D 324925 CDS YP_002018502.1 194336708 6463174 complement(1738491..1739744) 1 NC_011060.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cph:Cpha266_1724 diaminopimelate decarboxylase; diaminopimelate decarboxylase 1739744 6463174 Ppha_1648 Pelodictyon phaeoclathratiforme BU-1 diaminopimelate decarboxylase YP_002018502.1 1738491 R 324925 CDS YP_002018503.1 194336709 6463173 1739894..1740076 1 NC_011060.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1740076 rpmG 6463173 rpmG Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L33 YP_002018503.1 1739894 D 324925 CDS YP_002018504.1 194336710 6463163 1740355..1741152 1 NC_011060.1 PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein; hypothetical protein 1741152 6463163 Ppha_1650 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018504.1 1740355 D 324925 CDS YP_002018505.1 194336711 6463159 complement(1741651..1741875) 1 NC_011060.1 KEGG: cph:Cpha266_1731 hypothetical protein; hypothetical protein 1741875 6463159 Ppha_1651 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018505.1 1741651 R 324925 CDS YP_002018506.1 194336712 6463155 complement(1742014..1745646) 1 NC_011060.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: cch:Cag_0799 oxidoreductase, FAD-binding; FAD linked oxidase domain-containing protein 1745646 6463155 Ppha_1652 Pelodictyon phaeoclathratiforme BU-1 FAD linked oxidase domain-containing protein YP_002018506.1 1742014 R 324925 CDS YP_002018507.1 194336713 6463154 1746059..1749040 1 NC_011060.1 KEGG: cph:Cpha266_1788 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; SMART: PAS domain containing protein; MCP methyltransferase/methylesterase 1749040 6463154 Ppha_1653 Pelodictyon phaeoclathratiforme BU-1 MCP methyltransferase/methylesterase YP_002018507.1 1746059 D 324925 CDS YP_002018508.1 194336714 6463151 1749068..1752415 1 NC_011060.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1752415 6463151 Ppha_1654 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor hybrid histidine kinase YP_002018508.1 1749068 D 324925 CDS YP_002018509.1 194336715 6463148 complement(1752464..1753714) 1 NC_011060.1 KEGG: cph:Cpha266_1051 hypothetical protein; hypothetical protein 1753714 6463148 Ppha_1655 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018509.1 1752464 R 324925 CDS YP_002018510.1 194336716 6463145 1754063..1754317 1 NC_011060.1 KEGG: cph:Cpha266_1437 hypothetical protein; hypothetical protein 1754317 6463145 Ppha_1656 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018510.1 1754063 D 324925 CDS YP_002018511.1 194336717 6463143 1754304..1756523 1 NC_011060.1 TIGRFAM: CRISPR-associated helicase Cas3; SMART: DEAD-like helicases; KEGG: dvl:Dvul_2978 metal dependent phosphohydrolase; CRISPR-associated helicase Cas3 1756523 6463143 Ppha_1657 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated helicase Cas3 YP_002018511.1 1754304 D 324925 CDS YP_002018512.1 194336718 6463142 1756542..1757177 1 NC_011060.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: dvl:Dvul_2977 CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5 family 1757177 6463142 Ppha_1658 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein Cas5 family YP_002018512.1 1756542 D 324925 CDS YP_002018513.1 194336719 6463140 1757174..1758835 1 NC_011060.1 TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: drm:Dred_1004 CRISPR-associated protein, Csd1 family; CRISPR-associated protein, Csd1 family 1758835 6463140 Ppha_1659 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein, Csd1 family YP_002018513.1 1757174 D 324925 CDS YP_002018514.1 194336720 6463139 1758864..1759904 1 NC_011060.1 TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: cph:Cpha266_1433 CRISPR-associated protein, Csd2 family; CRISPR-associated protein, Csd2 family 1759904 6463139 Ppha_1660 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein, Csd2 family YP_002018514.1 1758864 D 324925 CDS YP_002018515.1 194336721 6463137 1759908..1760552 1 NC_011060.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cph:Cpha266_1432 CRISPR-associated protein Cas4; CRISPR-associated protein Cas4 1760552 6463137 Ppha_1661 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein Cas4 YP_002018515.1 1759908 D 324925 CDS YP_002018516.1 194336722 6463252 1760549..1761580 1 NC_011060.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cph:Cpha266_1431 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 1761580 6463252 Ppha_1662 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein Cas1 YP_002018516.1 1760549 D 324925 CDS YP_002018517.1 194336723 6463133 1761586..1761876 1 NC_011060.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cph:Cpha266_1430 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 1761876 6463133 Ppha_1663 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein Cas2 YP_002018517.1 1761586 D 324925 CDS YP_002018518.1 194336724 6463129 1768610..1770064 1 NC_011060.1 KEGG: cph:Cpha266_1274 hypothetical protein; hypothetical protein 1770064 6463129 Ppha_1664 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018518.1 1768610 D 324925 CDS YP_002018519.1 194336725 6463126 complement(1770154..1771257) 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein; transposase IS4 family protein 1771257 6463126 Ppha_1665 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002018519.1 1770154 R 324925 CDS YP_002018520.1 194336726 6463123 1771327..1772973 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein 1772973 6463123 Ppha_1666 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002018520.1 1771327 D 324925 CDS YP_002018521.1 194336727 6463117 complement(1773380..1776535) 1 NC_011060.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1776535 6463117 Ppha_1668 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor hybrid histidine kinase YP_002018521.1 1773380 R 324925 CDS YP_002018522.1 194336728 6463115 complement(1776572..1777330) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_1050 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1777330 6463115 Ppha_1669 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002018522.1 1776572 R 324925 CDS YP_002018523.1 194336729 6463111 complement(1777350..1777922) 1 NC_011060.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: gfo:GFO_3028 DNA polymerase III subunit alpha-1; Exonuclease RNase T and DNA polymerase III 1777922 6463111 Ppha_1670 Pelodictyon phaeoclathratiforme BU-1 Exonuclease RNase T and DNA polymerase III YP_002018523.1 1777350 R 324925 CDS YP_002018524.1 194336730 6463109 complement(1777944..1778309) 1 NC_011060.1 KEGG: cch:Cag_0968 hypothetical protein; hypothetical protein 1778309 6463109 Ppha_1671 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018524.1 1777944 R 324925 CDS YP_002018525.1 194336731 6463108 complement(1778373..1779242) 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1049 glycosyl transferase, family 2; family 2 glycosyl transferase 1779242 6463108 Ppha_1672 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002018525.1 1778373 R 324925 CDS YP_002018526.1 194336732 6463107 complement(1779265..1780536) 1 NC_011060.1 KEGG: cph:Cpha266_1047 hypothetical protein; hypothetical protein 1780536 6463107 Ppha_1673 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018526.1 1779265 R 324925 CDS YP_002018527.1 194336733 6463106 complement(1780537..1780935) 1 NC_011060.1 KEGG: cph:Cpha266_1046 hypothetical protein; hypothetical protein 1780935 6463106 Ppha_1674 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018527.1 1780537 R 324925 CDS YP_002018528.1 194336734 6463105 complement(1780985..1784089) 1 NC_011060.1 PFAM: acriflavin resistance protein; KEGG: cch:Cag_0971 NolG efflux transporter; acriflavin resistance protein 1784089 6463105 Ppha_1675 Pelodictyon phaeoclathratiforme BU-1 acriflavin resistance protein YP_002018528.1 1780985 R 324925 CDS YP_002018529.1 194336735 6463103 complement(1784086..1785189) 1 NC_011060.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cch:Cag_0972 secretion protein HlyD; RND family efflux transporter MFP subunit 1785189 6463103 Ppha_1676 Pelodictyon phaeoclathratiforme BU-1 RND family efflux transporter MFP subunit YP_002018529.1 1784086 R 324925 CDS YP_002018530.1 194336736 6463101 complement(1785284..1786015) 1 NC_011060.1 PFAM: PhoU family protein; KEGG: cph:Cpha266_1043 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 1786015 6463101 Ppha_1677 Pelodictyon phaeoclathratiforme BU-1 phosphate uptake regulator PhoU YP_002018530.1 1785284 R 324925 CDS YP_002018531.1 194336737 6463099 complement(1786170..1786829) 1 NC_011060.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cch:Cag_0974 PhoU; phosphate uptake regulator PhoU 1786829 6463099 Ppha_1678 Pelodictyon phaeoclathratiforme BU-1 phosphate uptake regulator PhoU YP_002018531.1 1786170 R 324925 CDS YP_002018532.1 194336738 6463098 complement(1786848..1787708) 1 NC_011060.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 1787708 6463098 Ppha_1679 Pelodictyon phaeoclathratiforme BU-1 phosphate ABC transporter ATP-binding protein YP_002018532.1 1786848 R 324925 CDS YP_002018533.1 194336739 6463095 complement(1787720..1789066) 1 NC_011060.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1040 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 1789066 6463095 Ppha_1680 Pelodictyon phaeoclathratiforme BU-1 phosphate ABC transporter permease YP_002018533.1 1787720 R 324925 CDS YP_002018534.1 194336740 6463094 complement(1789119..1790282) 1 NC_011060.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1039 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease 1790282 6463094 Ppha_1681 Pelodictyon phaeoclathratiforme BU-1 phosphate ABC transporter permease YP_002018534.1 1789119 R 324925 CDS YP_002018535.1 194336741 6463091 complement(1790503..1791333) 1 NC_011060.1 TIGRFAM: phosphate binding protein; KEGG: cph:Cpha266_1038 phosphate binding protein; phosphate binding protein 1791333 6463091 Ppha_1682 Pelodictyon phaeoclathratiforme BU-1 phosphate binding protein YP_002018535.1 1790503 R 324925 CDS YP_002018536.1 194336742 6463089 1791570..1791794 1 NC_011060.1 KEGG: cch:Cag_0975 chlorosome envelope protein B; chlorosome envelope protein B 1791794 6463089 Ppha_1683 Pelodictyon phaeoclathratiforme BU-1 chlorosome envelope protein B YP_002018536.1 1791570 D 324925 CDS YP_002018537.1 194336743 6463086 1791913..1792575 1 NC_011060.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1237 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase 1792575 6463086 Ppha_1684 Pelodictyon phaeoclathratiforme BU-1 HAD-superfamily hydrolase YP_002018537.1 1791913 D 324925 CDS YP_002018538.1 194336744 6463085 complement(1792726..1801284) 1 NC_011060.1 PFAM: Alkaline phosphatase; metallophosphoesterase; metalloenzyme domain protein; 5'-Nucleotidase domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: cph:Cpha266_1750 5'-nucleotidase domain protein; 5'-nucleotidase 1801284 6463085 Ppha_1685 Pelodictyon phaeoclathratiforme BU-1 5'-nucleotidase YP_002018538.1 1792726 R 324925 CDS YP_002018539.1 194336745 6463083 complement(1801515..1801778) 1 NC_011060.1 KEGG: cph:Cpha266_1035 hypothetical protein; hypothetical protein 1801778 6463083 Ppha_1686 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018539.1 1801515 R 324925 CDS YP_002018540.1 194336746 6463081 complement(1801851..1802513) 1 NC_011060.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pvi:Cvib_1001 hypothetical protein; N-acetyltransferase GCN5 1802513 6463081 Ppha_1687 Pelodictyon phaeoclathratiforme BU-1 N-acetyltransferase GCN5 YP_002018540.1 1801851 R 324925 CDS YP_002018541.1 194336747 6463078 complement(1802539..1803252) 1 NC_011060.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: plt:Plut_1250 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1803252 6463078 Ppha_1688 Pelodictyon phaeoclathratiforme BU-1 phospholipid/glycerol acyltransferase YP_002018541.1 1802539 R 324925 CDS YP_002018542.1 194336748 6463082 1803530..1804990 1 NC_011060.1 KEGG: aae:aq_031 transporter (PHO87 family); hypothetical protein 1804990 6463082 Ppha_1689 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018542.1 1803530 D 324925 CDS YP_002018543.1 194336749 6463075 complement(1805107..1806210) 1 NC_011060.1 KEGG: cph:Cpha266_1199 hypothetical protein; hypothetical protein 1806210 6463075 Ppha_1690 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018543.1 1805107 R 324925 CDS YP_002018544.1 194336750 6463073 1806683..1807042 1 NC_011060.1 KEGG: cph:Cpha266_1030 hypothetical protein; hypothetical protein 1807042 6463073 Ppha_1691 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018544.1 1806683 D 324925 CDS YP_002018545.1 194336751 6463070 1807249..1807566 1 NC_011060.1 KEGG: dol:Dole_2934 hypothetical protein; hypothetical protein 1807566 6463070 Ppha_1692 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018545.1 1807249 D 324925 CDS YP_002018546.1 194336752 6463068 1807810..1808391 1 NC_011060.1 KEGG: cph:Cpha266_2366 helix-turn-helix domain protein; hypothetical protein 1808391 6463068 Ppha_1693 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018546.1 1807810 D 324925 CDS YP_002018547.1 194336753 6463065 complement(1808561..1809613) 1 NC_011060.1 KEGG: cte:CT0885 hypothetical protein; hypothetical protein 1809613 6463065 Ppha_1694 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018547.1 1808561 R 324925 CDS YP_002018548.1 194336754 6463057 complement(1809788..1810339) 1 NC_011060.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase 1810339 6463057 Ppha_1695 Pelodictyon phaeoclathratiforme BU-1 pyruvoyl-dependent arginine decarboxylase YP_002018548.1 1809788 R 324925 CDS YP_002018549.1 194336755 6463056 1810730..1811884 1 NC_011060.1 KEGG: cte:CT0885 hypothetical protein; hypothetical protein 1811884 6463056 Ppha_1696 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018549.1 1810730 D 324925 CDS YP_002018550.1 194336756 6463055 complement(1811957..1812109) 1 NC_011060.1 KEGG: cph:Cpha266_0991 hypothetical protein; hypothetical protein 1812109 6463055 Ppha_1697 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018550.1 1811957 R 324925 CDS YP_002018551.1 194336757 6463054 1812420..1813991 1 NC_011060.1 PFAM: CHAD domain containing protein; KEGG: cte:CT0884 hypothetical protein; CHAD domain-containing protein 1813991 6463054 Ppha_1698 Pelodictyon phaeoclathratiforme BU-1 CHAD domain-containing protein YP_002018551.1 1812420 D 324925 CDS YP_002018552.1 194336758 6463053 1813988..1814737 1 NC_011060.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pvi:Cvib_0908 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1814737 6463053 Ppha_1699 Pelodictyon phaeoclathratiforme BU-1 Cobyrinic acid ac-diamide synthase YP_002018552.1 1813988 D 324925 CDS YP_002018553.1 194336759 6463052 1814894..1816366 1 NC_011060.1 PFAM: Alkaline phosphatase; KEGG: cph:Cpha266_2693 alkaline phosphatase; alkaline phosphatase 1816366 6463052 Ppha_1700 Pelodictyon phaeoclathratiforme BU-1 alkaline phosphatase YP_002018553.1 1814894 D 324925 CDS YP_002018554.1 194336760 6463047 1816437..1817147 1 NC_011060.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pvi:Cvib_1147 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 1817147 6463047 Ppha_1701 Pelodictyon phaeoclathratiforme BU-1 winged helix family two component transcriptional regulator YP_002018554.1 1816437 D 324925 CDS YP_002018555.1 194336761 6463046 1817137..1818963 1 NC_011060.1 KEGG: cph:Cpha266_0881 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1818963 6463046 Ppha_1702 Pelodictyon phaeoclathratiforme BU-1 multi-sensor signal transduction histidine kinase YP_002018555.1 1817137 D 324925 CDS YP_002018556.1 194336762 6463045 1819046..1820107 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1813 glycosyl transferase, family 2; family 2 glycosyl transferase 1820107 6463045 Ppha_1703 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002018556.1 1819046 D 324925 CDS YP_002018557.1 194336763 6463041 1820141..1821337 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1811 glycosyl transferase, family 2; family 2 glycosyl transferase 1821337 6463041 Ppha_1704 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002018557.1 1820141 D 324925 CDS YP_002018558.1 194336764 6463038 complement(1821344..1821637) 1 NC_011060.1 PFAM: plasmid stabilization system; KEGG: cch:Cag_1130 hypothetical protein; plasmid stabilization system 1821637 6463038 Ppha_1705 Pelodictyon phaeoclathratiforme BU-1 plasmid stabilization system YP_002018558.1 1821344 R 324925 CDS YP_002018559.1 194336765 6463036 complement(1821634..1821840) 1 NC_011060.1 KEGG: swo:Swol_1551 hypothetical protein; hypothetical protein 1821840 6463036 Ppha_1706 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018559.1 1821634 R 324925 CDS YP_002018560.1 194336766 6463035 1822165..1822671 1 NC_011060.1 KEGG: cph:Cpha266_1183 hypothetical protein; hypothetical protein 1822671 6463035 Ppha_1707 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018560.1 1822165 D 324925 CDS YP_002018561.1 194336767 6463034 1822804..1823028 1 NC_011060.1 PFAM: protein of unknown function DUF433; KEGG: cph:Cpha266_2222 protein of unknown function DUF433; hypothetical protein 1823028 6463034 Ppha_1708 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018561.1 1822804 D 324925 CDS YP_002018562.1 194336768 6463033 1823025..1823369 1 NC_011060.1 KEGG: cph:Cpha266_2196 hypothetical protein; hypothetical protein 1823369 6463033 Ppha_1709 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018562.1 1823025 D 324925 CDS YP_002018563.1 194336769 6463024 1823464..1823631 1 NC_011060.1 KEGG: cph:Cpha266_1183 hypothetical protein; hypothetical protein 1823631 6463024 Ppha_1710 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018563.1 1823464 D 324925 CDS YP_002018564.1 194336770 6463023 1823775..1824407 1 NC_011060.1 KEGG: cph:Cpha266_0769 hypothetical protein; hypothetical protein 1824407 6463023 Ppha_1711 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018564.1 1823775 D 324925 CDS YP_002018565.1 194336771 6463022 1824416..1826869 1 NC_011060.1 PFAM: hypothetical protein-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 hypothetical protein; hypothetical protein 1826869 6463022 Ppha_1712 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018565.1 1824416 D 324925 CDS YP_002018566.1 194336772 6463021 1827045..1827290 1 NC_011060.1 KEGG: cph:Cpha266_2604 hypothetical protein; hypothetical protein 1827290 6463021 Ppha_1713 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018566.1 1827045 D 324925 CDS YP_002018567.1 194336773 6463020 complement(1827457..1827660) 1 NC_011060.1 KEGG: gur:Gura_2218 hypothetical protein; hypothetical protein 1827660 6463020 Ppha_1714 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018567.1 1827457 R 324925 CDS YP_002018568.1 194336774 6463009 complement(1827650..1827931) 1 NC_011060.1 PFAM: protein of unknown function DUF497; KEGG: rrs:RoseRS_0832 protein of unknown function DUF497; hypothetical protein 1827931 6463009 Ppha_1715 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018568.1 1827650 R 324925 CDS YP_002018569.1 194336775 6463001 complement(1828073..1828300) 1 NC_011060.1 KEGG: cph:Cpha266_0070 helix-turn-helix protein, CopG family; helix-turn-helix protein, CopG family 1828300 6463001 Ppha_1716 Pelodictyon phaeoclathratiforme BU-1 helix-turn-helix protein, CopG family YP_002018569.1 1828073 R 324925 CDS YP_002018570.1 194336776 6462999 complement(1828350..1828853) 1 NC_011060.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA4135 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1828853 6462999 Ppha_1717 Pelodictyon phaeoclathratiforme BU-1 N-acetyltransferase GCN5 YP_002018570.1 1828350 R 324925 CDS YP_002018571.1 194336777 6462993 complement(1828860..1829138) 1 NC_011060.1 PFAM: Protein of unknown function DUF1778; KEGG: rpe:RPE_1144 hypothetical protein; hypothetical protein 1829138 6462993 Ppha_1718 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018571.1 1828860 R 324925 CDS YP_002018572.1 194336778 6462982 complement(1830494..1830883) 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_0660 hypothetical protein; PilT protein domain-containing protein 1830883 6462982 Ppha_1720 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002018572.1 1830494 R 324925 CDS YP_002018573.1 194336779 6462981 complement(1830880..1831110) 1 NC_011060.1 KEGG: cch:Cag_0659 hypothetical protein; hypothetical protein 1831110 6462981 Ppha_1721 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018573.1 1830880 R 324925 CDS YP_002018574.1 194336780 6462980 complement(1831362..1831613) 1 NC_011060.1 KEGG: ape:APE_0890a.1 hypothetical protein; hypothetical protein 1831613 6462980 Ppha_1722 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018574.1 1831362 R 324925 CDS YP_002018575.1 194336781 6462977 1832032..1832358 1 NC_011060.1 PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0835 conserved hypothetical protein, phage-related; hypothetical protein 1832358 6462977 Ppha_1723 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018575.1 1832032 D 324925 CDS YP_002018576.1 194336782 6462975 1832351..1832677 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_0834 transcriptional regulator, XRE family; XRE family transcriptional regulator 1832677 6462975 Ppha_1724 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018576.1 1832351 D 324925 CDS YP_002018577.1 194336783 6462974 complement(1832698..1832904) 1 NC_011060.1 KEGG: plt:Plut_1080 ATPase; ATPase 1832904 6462974 Ppha_1725 Pelodictyon phaeoclathratiforme BU-1 ATPase YP_002018577.1 1832698 R 324925 CDS YP_002018578.1 194336784 6461064 complement(1833005..1834078) 1 NC_011060.1 KEGG: cph:Cpha266_1199 hypothetical protein; hypothetical protein 1834078 6461064 Ppha_1726 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018578.1 1833005 R 324925 CDS YP_002018579.1 194336785 6462972 1834372..1835010 1 NC_011060.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cph:Cpha266_1198 tRNA guanosine-2'-O-methyltransferase; tRNA guanosine-2'-O-methyltransferase 1835010 6462972 Ppha_1727 Pelodictyon phaeoclathratiforme BU-1 tRNA guanosine-2'-O-methyltransferase YP_002018579.1 1834372 D 324925 CDS YP_002018580.1 194336786 6461083 complement(1835039..1836088) 1 NC_011060.1 PFAM: ferredoxin; KEGG: cph:Cpha266_1733 ferredoxin; ferredoxin 1836088 6461083 Ppha_1728 Pelodictyon phaeoclathratiforme BU-1 ferredoxin YP_002018580.1 1835039 R 324925 CDS YP_002018581.1 194336787 6462969 complement(1836202..1836744) 1 NC_011060.1 KEGG: cph:Cpha266_1735 hypothetical protein; hypothetical protein 1836744 6462969 Ppha_1729 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018581.1 1836202 R 324925 CDS YP_002018582.1 194336788 6462962 complement(1836756..1837175) 1 NC_011060.1 PFAM: protein of unknown function UPF0054; KEGG: cph:Cpha266_1736 protein of unknown function UPF0054; hypothetical protein 1837175 6462962 Ppha_1730 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018582.1 1836756 R 324925 CDS YP_002018583.1 194336789 6462961 complement(1837159..1838463) 1 NC_011060.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cph:Cpha266_1737 GTP-binding protein, HSR1-related; GTP-binding proten HflX 1838463 6462961 Ppha_1731 Pelodictyon phaeoclathratiforme BU-1 GTP-binding proten HflX YP_002018583.1 1837159 R 324925 CDS YP_002018584.1 194336790 6462960 1838675..1839607 1 NC_011060.1 PFAM: Squalene/phytoene synthase; KEGG: cph:Cpha266_1738 squalene/phytoene synthase; squalene/phytoene synthase 1839607 6462960 Ppha_1732 Pelodictyon phaeoclathratiforme BU-1 squalene/phytoene synthase YP_002018584.1 1838675 D 324925 CDS YP_002018585.1 194336791 6462950 1839735..1841270 1 NC_011060.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1841270 lysS 6462950 lysS Pelodictyon phaeoclathratiforme BU-1 lysyl-tRNA synthetase YP_002018585.1 1839735 D 324925 CDS YP_002018586.1 194336792 6462948 1841275..1841697 1 NC_011060.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: swo:Swol_0220 nucleotidyltransferase substrate-binding protein; nucleotidyltransferase substrate binding protein 1841697 6462948 Ppha_1734 Pelodictyon phaeoclathratiforme BU-1 nucleotidyltransferase substrate binding protein YP_002018586.1 1841275 D 324925 CDS YP_002018587.1 194336793 6462945 1841690..1842010 1 NC_011060.1 PFAM: DNA polymerase beta domain protein region; KEGG: swo:Swol_0221 hypothetical protein; DNA polymerase beta domain-containing protein 1842010 6462945 Ppha_1735 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase beta domain-containing protein YP_002018587.1 1841690 D 324925 CDS YP_002018588.1 194336794 6462944 1842115..1842345 1 NC_011060.1 hypothetical protein 1842345 6462944 Ppha_1736 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018588.1 1842115 D 324925 CDS YP_002018589.1 194336795 6462940 1842342..1842689 1 NC_011060.1 KEGG: mar:MAE_08750 PemK-like protein; transcriptional modulator of MazE/toxin MazF 1842689 6462940 Ppha_1737 Pelodictyon phaeoclathratiforme BU-1 transcriptional modulator of MazE/toxin MazF YP_002018589.1 1842342 D 324925 CDS YP_002018590.1 194336796 6462937 1843398..1843598 1 NC_011060.1 KEGG: mlo:mlr2530 hypothetical protein; hypothetical protein 1843598 6462937 Ppha_1739 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018590.1 1843398 D 324925 CDS YP_002018591.1 194336797 6462936 1843595..1843858 1 NC_011060.1 KEGG: amr:AM1_1925 hypothetical protein; hypothetical protein 1843858 6462936 Ppha_1740 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018591.1 1843595 D 324925 CDS YP_002018592.1 194336798 6462932 1844130..1844585 1 NC_011060.1 KEGG: cyb:CYB_0386 hypothetical protein; hypothetical protein 1844585 6462932 Ppha_1742 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018592.1 1844130 D 324925 CDS YP_002018593.1 194336799 6462931 1844582..1845016 1 NC_011060.1 PFAM: protein of unknown function DUF1130; KEGG: cyb:CYB_0385 hypothetical protein; hypothetical protein 1845016 6462931 Ppha_1743 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018593.1 1844582 D 324925 CDS YP_002018594.1 194336800 6462930 complement(1845111..1845299) 1 NC_011060.1 KEGG: sun:SUN_0701 hypothetical protein; hypothetical protein 1845299 6462930 Ppha_1744 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018594.1 1845111 R 324925 CDS YP_002018595.1 194336801 6462929 1845626..1845862 1 NC_011060.1 KEGG: cch:Cag_0678 hypothetical protein; hypothetical protein 1845862 6462929 Ppha_1745 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018595.1 1845626 D 324925 CDS YP_002018596.1 194336802 6462925 1845838..1846281 1 NC_011060.1 KEGG: cph:Cpha266_2655 protein of unknown function DUF132; hypothetical protein 1846281 6462925 Ppha_1746 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018596.1 1845838 D 324925 CDS YP_002018597.1 194336803 6462920 complement(1846433..1846996) 1 NC_011060.1 PFAM: shikimate kinase; KEGG: csc:Csac_2240 shikimate kinase; shikimate kinase 1846996 6462920 Ppha_1747 Pelodictyon phaeoclathratiforme BU-1 shikimate kinase YP_002018597.1 1846433 R 324925 CDS YP_002018598.1 194336804 6462918 complement(1847028..1848041) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_1182 capsular polysaccharide biosynthesis protein I; NAD-dependent epimerase/dehydratase 1848041 6462918 Ppha_1748 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002018598.1 1847028 R 324925 CDS YP_002018599.1 194336805 6462922 1848343..1849791 1 NC_011060.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cch:Cag_1183 hypothetical protein; hypothetical protein 1849791 6462922 Ppha_1749 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018599.1 1848343 D 324925 CDS YP_002018600.1 194336806 6462916 1849811..1850884 1 NC_011060.1 PFAM: protein of unknown function DUF403; KEGG: cch:Cag_1184 hypothetical protein; hypothetical protein 1850884 6462916 Ppha_1750 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018600.1 1849811 D 324925 CDS YP_002018601.1 194336807 6462915 1850906..1851724 1 NC_011060.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cch:Cag_1185 transglutaminase-like; transglutaminase domain-containing protein 1851724 6462915 Ppha_1751 Pelodictyon phaeoclathratiforme BU-1 transglutaminase domain-containing protein YP_002018601.1 1850906 D 324925 CDS YP_002018602.1 194336808 6462911 1851966..1852988 1 NC_011060.1 KEGG: cph:Cpha266_1005 hypothetical protein; hypothetical protein 1852988 6462911 Ppha_1753 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018602.1 1851966 D 324925 CDS YP_002018603.1 194336809 6462908 complement(1853162..1854229) 1 NC_011060.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: cch:Cag_1187 cytochrome c551 peroxidase; cytochrome-c peroxidase 1854229 6462908 Ppha_1754 Pelodictyon phaeoclathratiforme BU-1 cytochrome-c peroxidase YP_002018603.1 1853162 R 324925 CDS YP_002018604.1 194336810 6462906 complement(1854413..1855573) 1 NC_011060.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: cph:Cpha266_1353 cytochrome-c peroxidase; cytochrome-c peroxidase 1855573 6462906 Ppha_1755 Pelodictyon phaeoclathratiforme BU-1 cytochrome-c peroxidase YP_002018604.1 1854413 R 324925 CDS YP_002018605.1 194336811 6462905 1855874..1857007 1 NC_011060.1 KEGG: cph:Cpha266_1759 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1857007 6462905 Ppha_1756 Pelodictyon phaeoclathratiforme BU-1 queuine tRNA-ribosyltransferase YP_002018605.1 1855874 D 324925 CDS YP_002018606.1 194336812 6462904 1856994..1858289 1 NC_011060.1 KEGG: cph:Cpha266_1760 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; radical SAM protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG 1858289 6462904 Ppha_1757 Pelodictyon phaeoclathratiforme BU-1 MiaB-like tRNA modifying protein YliG YP_002018606.1 1856994 D 324925 CDS YP_002018607.1 194336813 6462900 complement(1858635..1858931) 1 NC_011060.1 KEGG: gsu:GSU0055 hypothetical protein; hypothetical protein 1858931 6462900 Ppha_1758 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018607.1 1858635 R 324925 CDS YP_002018608.1 194336814 6462898 complement(1858931..1859161) 1 NC_011060.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cte:CT1476 hypothetical protein; addiction module protein 1859161 6462898 Ppha_1759 Pelodictyon phaeoclathratiforme BU-1 addiction module protein YP_002018608.1 1858931 R 324925 CDS YP_002018609.1 194336815 6462893 1859413..1860420 1 NC_011060.1 KEGG: cph:Cpha266_0845 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase-like protein 1860420 6462893 Ppha_1760 Pelodictyon phaeoclathratiforme BU-1 alkylhydroperoxidase-like protein YP_002018609.1 1859413 D 324925 CDS YP_002018610.1 194336816 6462892 complement(1860409..1861776) 1 NC_011060.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0312 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); cobyrinic acid a,c-diamide synthase 1861776 6462892 Ppha_1761 Pelodictyon phaeoclathratiforme BU-1 cobyrinic acid a,c-diamide synthase YP_002018610.1 1860409 R 324925 CDS YP_002018611.1 194336817 6462891 complement(1861780..1862532) 1 NC_011060.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 1862532 6462891 Ppha_1762 Pelodictyon phaeoclathratiforme BU-1 glutamine amidotransferase YP_002018611.1 1861780 R 324925 CDS YP_002018612.1 194336818 6462887 1862566..1863360 1 NC_011060.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1863360 aroK 6462887 aroK Pelodictyon phaeoclathratiforme BU-1 shikimate kinase YP_002018612.1 1862566 D 324925 CDS YP_002018613.1 194336819 6462886 1863376..1864473 1 NC_011060.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1864473 aroB 6462886 aroB Pelodictyon phaeoclathratiforme BU-1 3-dehydroquinate synthase YP_002018613.1 1863376 D 324925 CDS YP_002018614.1 194336820 6462885 complement(1864451..1865269) 1 NC_011060.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1865269 6462885 Ppha_1765 Pelodictyon phaeoclathratiforme BU-1 pantothenate kinase YP_002018614.1 1864451 R 324925 CDS YP_002018615.1 194336821 6462883 complement(1865295..1865801) 1 NC_011060.1 KEGG: cph:Cpha266_0834 hypothetical protein; hypothetical protein 1865801 6462883 Ppha_1766 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018615.1 1865295 R 324925 CDS YP_002018616.1 194336822 6462882 complement(1865950..1868118) 1 NC_011060.1 PFAM: glutamine synthetase catalytic region; KEGG: cph:Cpha266_0832 glutamine synthetase, catalytic region; glutamine synthetase 1868118 6462882 Ppha_1767 Pelodictyon phaeoclathratiforme BU-1 glutamine synthetase YP_002018616.1 1865950 R 324925 CDS YP_002018617.1 194336823 6462881 complement(1868163..1868687) 1 NC_011060.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: cph:Cpha266_0831 transcriptional regulator, AsnC family; AsnC family transcriptional regulator 1868687 6462881 Ppha_1768 Pelodictyon phaeoclathratiforme BU-1 AsnC family transcriptional regulator YP_002018617.1 1868163 R 324925 CDS YP_002018618.1 194336824 6462878 1869192..1870553 1 NC_011060.1 PFAM: amine oxidase; KEGG: cph:Cpha266_0830 zeta-carotene desaturase; Carotene 7,8-desaturase 1870553 6462878 Ppha_1769 Pelodictyon phaeoclathratiforme BU-1 Carotene 7,8-desaturase YP_002018618.1 1869192 D 324925 CDS YP_002018619.1 194336825 6462877 1870562..1871170 1 NC_011060.1 KEGG: cch:Cag_1592 hypothetical protein; hypothetical protein 1871170 6462877 Ppha_1770 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018619.1 1870562 D 324925 CDS YP_002018620.1 194336826 6462871 1871152..1871844 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0827 glycosyl transferase, family 2; family 2 glycosyl transferase 1871844 6462871 Ppha_1771 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002018620.1 1871152 D 324925 CDS YP_002018621.1 194336827 6462870 1871969..1872628 1 NC_011060.1 TIGRFAM: chlorosome envelope protein H; KEGG: plt:Plut_1416 chlorosome envelope protein H; chlorosome envelope protein H 1872628 6462870 Ppha_1772 Pelodictyon phaeoclathratiforme BU-1 chlorosome envelope protein H YP_002018621.1 1871969 D 324925 CDS YP_002018622.1 194336828 6462867 complement(1872733..1873179) 1 NC_011060.1 KEGG: cch:Cag_1595 deoxyUTP pyrophosphatase subfamily 1; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 1873179 6462867 Ppha_1773 Pelodictyon phaeoclathratiforme BU-1 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_002018622.1 1872733 R 324925 CDS YP_002018623.1 194336829 6462863 1873248..1873997 1 NC_011060.1 PFAM: LmbE family protein; KEGG: cch:Cag_1596 hypothetical protein; LmbE family protein 1873997 6462863 Ppha_1774 Pelodictyon phaeoclathratiforme BU-1 LmbE family protein YP_002018623.1 1873248 D 324925 CDS YP_002018624.1 194336830 6462861 1874094..1875374 1 NC_011060.1 KEGG: cch:Cag_0405 hypothetical protein; hypothetical protein 1875374 6462861 Ppha_1775 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018624.1 1874094 D 324925 CDS YP_002018625.1 194336831 6462860 1875470..1876342 1 NC_011060.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cph:Cpha266_1037 phosphate binding protein; phosphate binding protein 1876342 6462860 Ppha_1776 Pelodictyon phaeoclathratiforme BU-1 phosphate binding protein YP_002018625.1 1875470 D 324925 CDS YP_002018626.1 194336832 6462856 1876508..1877806 1 NC_011060.1 PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1048 pentapeptide repeat protein; pentapeptide repeat-containing protein 1877806 6462856 Ppha_1777 Pelodictyon phaeoclathratiforme BU-1 pentapeptide repeat-containing protein YP_002018626.1 1876508 D 324925 CDS YP_002018627.1 194336833 6462854 1878240..1879874 1 NC_011060.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1879874 6462854 Ppha_1778 Pelodictyon phaeoclathratiforme BU-1 thiamine biosynthesis protein ThiC YP_002018627.1 1878240 D 324925 CDS YP_002018628.1 194336834 6462247 complement(1879943..1880698) 1 NC_011060.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1880698 tpiA 6462247 tpiA Pelodictyon phaeoclathratiforme BU-1 triosephosphate isomerase YP_002018628.1 1879943 R 324925 CDS YP_002018629.1 194336835 6461880 complement(1880709..1880933) 1 NC_011060.1 KEGG: plt:Plut_1465 hypothetical protein; hypothetical protein 1880933 6461880 Ppha_1780 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018629.1 1880709 R 324925 CDS YP_002018630.1 194336836 6462477 complement(1880967..1881446) 1 NC_011060.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1881446 greA 6462477 greA Pelodictyon phaeoclathratiforme BU-1 transcription elongation factor GreA YP_002018630.1 1880967 R 324925 CDS YP_002018631.1 194336837 6461948 complement(1881611..1883107) 1 NC_011060.1 KEGG: cch:Cag_0494 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1883107 6461948 Ppha_1782 Pelodictyon phaeoclathratiforme BU-1 protease Do YP_002018631.1 1881611 R 324925 CDS YP_002018632.1 194336838 6462546 complement(1883163..1884659) 1 NC_011060.1 KEGG: cph:Cpha266_1856 anthranilate synthase, component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; anthranilate synthase component I 1884659 6462546 Ppha_1783 Pelodictyon phaeoclathratiforme BU-1 anthranilate synthase component I YP_002018632.1 1883163 R 324925 CDS YP_002018633.1 194336839 6462426 1884789..1885217 1 NC_011060.1 KEGG: cph:Cpha266_1857 hypothetical protein; hypothetical protein 1885217 6462426 Ppha_1784 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018633.1 1884789 D 324925 CDS YP_002018634.1 194336840 6461226 complement(1885211..1886041) 1 NC_011060.1 KEGG: cph:Cpha266_1858 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1886041 6461226 Ppha_1785 Pelodictyon phaeoclathratiforme BU-1 signal peptidase I YP_002018634.1 1885211 R 324925 CDS YP_002018635.1 194336841 6461982 complement(1886099..1887916) 1 NC_011060.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1887916 6461982 Ppha_1786 Pelodictyon phaeoclathratiforme BU-1 GTP-binding protein LepA YP_002018635.1 1886099 R 324925 CDS YP_002018636.1 194336842 6461283 complement(1887998..1888957) 1 NC_011060.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cch:Cag_0487 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 1888957 6461283 Ppha_1787 Pelodictyon phaeoclathratiforme BU-1 methionyl-tRNA formyltransferase YP_002018636.1 1887998 R 324925 CDS YP_002018637.1 194336843 6461430 complement(1888954..1889520) 1 NC_011060.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1889520 6461430 Ppha_1788 Pelodictyon phaeoclathratiforme BU-1 peptide deformylase YP_002018637.1 1888954 R 324925 CDS YP_002018638.1 194336844 6462219 complement(1889835..1890263) 1 NC_011060.1 PFAM: response regulator receiver; KEGG: cph:Cpha266_1833 PAS/PAC sensor protein; response regulator receiver protein 1890263 6462219 Ppha_1789 Pelodictyon phaeoclathratiforme BU-1 response regulator receiver protein YP_002018638.1 1889835 R 324925 CDS YP_002018639.1 194336845 6462549 1890920..1892419 1 NC_011060.1 KEGG: cch:Cag_0489 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 1892419 6462549 Ppha_1790 Pelodictyon phaeoclathratiforme BU-1 inosine-5'-monophosphate dehydrogenase YP_002018639.1 1890920 D 324925 CDS YP_002018640.1 194336846 6462326 1892681..1892899 1 NC_011060.1 hypothetical protein 1892899 6462326 Ppha_1791 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018640.1 1892681 D 324925 CDS YP_002018641.1 194336847 6461755 1892899..1893159 1 NC_011060.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: gur:Gura_1444 addiction module toxin, Txe/YoeB family; Txe/YoeB family addiction module toxin 1893159 6461755 Ppha_1792 Pelodictyon phaeoclathratiforme BU-1 Txe/YoeB family addiction module toxin YP_002018641.1 1892899 D 324925 CDS YP_002018642.1 194336848 6462444 1893215..1894024 1 NC_011060.1 KEGG: oan:Oant_1152 hypothetical protein; hypothetical protein 1894024 6462444 Ppha_1793 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018642.1 1893215 D 324925 CDS YP_002018643.1 194336849 6461166 complement(1894181..1898023) 1 NC_011060.1 KEGG: plt:Plut_0787 magnesium-chelatase, subunit H; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase; magnesium chelatase subunit H 1898023 6461166 Ppha_1794 Pelodictyon phaeoclathratiforme BU-1 magnesium chelatase subunit H YP_002018643.1 1894181 R 324925 CDS YP_002018644.1 194336850 6462598 complement(1898224..1900080) 1 NC_011060.1 KEGG: cph:Cpha266_1630 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit D; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor A; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase ATPase subunit D 1900080 6462598 Ppha_1795 Pelodictyon phaeoclathratiforme BU-1 magnesium chelatase ATPase subunit D YP_002018644.1 1898224 R 324925 CDS YP_002018645.1 194336851 6461994 complement(1900080..1901255) 1 NC_011060.1 KEGG: cph:Cpha266_1631 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit I; SMART: AAA ATPase; magnesium chelatase ATPase subunit I 1901255 6461994 Ppha_1796 Pelodictyon phaeoclathratiforme BU-1 magnesium chelatase ATPase subunit I YP_002018645.1 1900080 R 324925 CDS YP_002018646.1 194336852 6462303 complement(1901386..1902810) 1 NC_011060.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_1632 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1902810 6462303 Ppha_1797 Pelodictyon phaeoclathratiforme BU-1 dihydrolipoamide dehydrogenase YP_002018646.1 1901386 R 324925 CDS YP_002018647.1 194336853 6461534 1902881..1903930 1 NC_011060.1 KEGG: plt:Plut_0783 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1903930 6461534 Ppha_1798 Pelodictyon phaeoclathratiforme BU-1 RluA family pseudouridine synthase YP_002018647.1 1902881 D 324925 CDS YP_002018648.1 194336854 6461839 1904175..1907627 1 NC_011060.1 KEGG: plt:Plut_1093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 1907627 6461839 Ppha_1799 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor signal transduction histidine kinase YP_002018648.1 1904175 D 324925 CDS YP_002018649.1 194336855 6461944 1907630..1909024 1 NC_011060.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: drm:Dred_2001 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 1909024 6461944 Ppha_1800 Pelodictyon phaeoclathratiforme BU-1 Fis family two component sigma-54 specific transcriptional regulator YP_002018649.1 1907630 D 324925 CDS YP_002018650.1 194336856 6461767 complement(1909165..1909509) 1 NC_011060.1 PFAM: Gas vesicle K; KEGG: plt:Plut_0706 hypothetical protein; gas vesicle protein K 1909509 6461767 Ppha_1801 Pelodictyon phaeoclathratiforme BU-1 gas vesicle protein K YP_002018650.1 1909165 R 324925 CDS YP_002018651.1 194336857 6461092 complement(1909512..1910261) 1 NC_011060.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0705 hypothetical protein; gas vesicle synthesis GvpLGvpF 1910261 6461092 Ppha_1802 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis GvpLGvpF YP_002018651.1 1909512 R 324925 CDS YP_002018652.1 194336858 6461602 complement(1910286..1910486) 1 NC_011060.1 PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0704 hypothetical protein; gas vesicle protein GvpA 1910486 6461602 Ppha_1803 Pelodictyon phaeoclathratiforme BU-1 gas vesicle protein GvpA YP_002018652.1 1910286 R 324925 CDS YP_002018653.1 194336859 6461677 complement(1910488..1911288) 1 NC_011060.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0703 hypothetical protein; gas vesicle synthesis GvpLGvpF 1911288 6461677 Ppha_1804 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis GvpLGvpF YP_002018653.1 1910488 R 324925 CDS YP_002018654.1 194336860 6462673 complement(1911302..1911574) 1 NC_011060.1 KEGG: plt:Plut_0702 hypothetical protein; hypothetical protein 1911574 6462673 Ppha_1805 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018654.1 1911302 R 324925 CDS YP_002018655.1 194336861 6462421 complement(1911642..1911914) 1 NC_011060.1 PFAM: Gas vesicle G; KEGG: plt:Plut_0701 hypothetical protein; Gas vesicle G 1911914 6462421 Ppha_1806 Pelodictyon phaeoclathratiforme BU-1 Gas vesicle G YP_002018655.1 1911642 R 324925 CDS YP_002018656.1 194336862 6463455 complement(1911880..1912656) 1 NC_011060.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0700 hypothetical protein; gas vesicle synthesis GvpLGvpF 1912656 6463455 Ppha_1807 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis GvpLGvpF YP_002018656.1 1911880 R 324925 CDS YP_002018657.1 194336863 6463452 complement(1912680..1913453) 1 NC_011060.1 PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0699 hypothetical protein; gas vesicle synthesis GvpLGvpF 1913453 6463452 Ppha_1808 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis GvpLGvpF YP_002018657.1 1912680 R 324925 CDS YP_002018658.1 194336864 6463451 complement(1913455..1914474) 1 NC_011060.1 PFAM: heat shock protein DnaJ domain protein; Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0698 hypothetical protein; gas vesicle synthesis GvpLGvpF 1914474 6463451 Ppha_1809 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis GvpLGvpF YP_002018658.1 1913455 R 324925 CDS YP_002018659.1 194336865 6463448 complement(1914481..1916628) 1 NC_011060.1 KEGG: plt:Plut_0697 AAA ATPase, CDC48; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; SMART: AAA ATPase; ATPase AAA 1916628 6463448 Ppha_1810 Pelodictyon phaeoclathratiforme BU-1 ATPase AAA YP_002018659.1 1914481 R 324925 CDS YP_002018660.1 194336866 6463446 complement(1917596..1918108) 1 NC_011060.1 KEGG: plt:Plut_0695 hypothetical protein; hypothetical protein 1918108 6463446 Ppha_1812 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018660.1 1917596 R 324925 CDS YP_002018661.1 194336867 6463444 complement(1918121..1918420) 1 NC_011060.1 PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0694 gas vesicle synthesis protein; gas vesicle protein GvpA 1918420 6463444 Ppha_1813 Pelodictyon phaeoclathratiforme BU-1 gas vesicle protein GvpA YP_002018661.1 1918121 R 324925 CDS YP_002018662.1 194336868 6463442 complement(1918433..1918747) 1 NC_011060.1 KEGG: plt:Plut_0693 hypothetical protein; hypothetical protein 1918747 6463442 Ppha_1814 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018662.1 1918433 R 324925 CDS YP_002018663.1 194336869 6463441 complement(1918777..1919703) 1 NC_011060.1 KEGG: plt:Plut_0692 ATPase; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; gas vesicle protein GvpN 1919703 6463441 Ppha_1815 Pelodictyon phaeoclathratiforme BU-1 gas vesicle protein GvpN YP_002018663.1 1918777 R 324925 CDS YP_002018664.1 194336870 6463439 complement(1919829..1920974) 1 NC_011060.1 KEGG: plt:Plut_0691 hypothetical protein; hypothetical protein 1920974 6463439 Ppha_1816 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018664.1 1919829 R 324925 CDS YP_002018665.1 194336871 6463438 complement(1921003..1921614) 1 NC_011060.1 KEGG: plt:Plut_0690 hypothetical protein; hypothetical protein 1921614 6463438 Ppha_1817 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018665.1 1921003 R 324925 CDS YP_002018666.1 194336872 6463436 complement(1921777..1921983) 1 NC_011060.1 involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA 1921983 6463436 Ppha_1818 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis protein GvpA YP_002018666.1 1921777 R 324925 CDS YP_002018667.1 194336873 6463433 complement(1922036..1922242) 1 NC_011060.1 involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA 1922242 6463433 Ppha_1819 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis protein GvpA YP_002018667.1 1922036 R 324925 CDS YP_002018668.1 194336874 6463432 complement(1922295..1922501) 1 NC_011060.1 involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA 1922501 6463432 Ppha_1820 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis protein GvpA YP_002018668.1 1922295 R 324925 CDS YP_002018669.1 194336875 6463431 complement(1922554..1922760) 1 NC_011060.1 involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA 1922760 6463431 Ppha_1821 Pelodictyon phaeoclathratiforme BU-1 gas vesicle synthesis protein GvpA YP_002018669.1 1922554 R 324925 CDS YP_002018670.1 194336876 6463430 complement(1923149..1923859) 1 NC_011060.1 PFAM: DNA alkylation repair enzyme; KEGG: cph:Cpha266_1009 hypothetical protein; DNA alkylation repair protein 1923859 6463430 Ppha_1822 Pelodictyon phaeoclathratiforme BU-1 DNA alkylation repair protein YP_002018670.1 1923149 R 324925 CDS YP_002018671.1 194336877 6463429 complement(1923919..1925817) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1008 transcriptional regulator, Fis family; ABC transporter-like protein 1925817 6463429 Ppha_1823 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018671.1 1923919 R 324925 CDS YP_002018672.1 194336878 6463428 1926111..1926665 1 NC_011060.1 KEGG: pvi:Cvib_1065 hypothetical protein; hypothetical protein 1926665 6463428 Ppha_1824 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018672.1 1926111 D 324925 CDS YP_002018673.1 194336879 6463426 complement(1926795..1929344) 1 NC_011060.1 KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 1929344 6463426 Ppha_1825 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor signal transduction histidine kinase YP_002018673.1 1926795 R 324925 CDS YP_002018674.1 194336880 6463422 complement(1929521..1930216) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0849 ATPase; ABC transporter-like protein 1930216 6463422 Ppha_1826 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018674.1 1929521 R 324925 CDS YP_002018675.1 194336881 6463421 complement(1930209..1930937) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0850 ATPase; ABC transporter-like protein 1930937 6463421 Ppha_1827 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018675.1 1930209 R 324925 CDS YP_002018676.1 194336882 6463420 complement(1930934..1931929) 1 NC_011060.1 PFAM: inner-membrane translocator; KEGG: cch:Cag_0851 branched-chain amino acid ABC transporter, permease; inner-membrane translocator 1931929 6463420 Ppha_1828 Pelodictyon phaeoclathratiforme BU-1 inner-membrane translocator YP_002018676.1 1930934 R 324925 CDS YP_002018677.1 194336883 6463419 complement(1931929..1932798) 1 NC_011060.1 PFAM: inner-membrane translocator; KEGG: cch:Cag_0852 branched-chain amino acid ABC transporter, permease; inner-membrane translocator 1932798 6463419 Ppha_1829 Pelodictyon phaeoclathratiforme BU-1 inner-membrane translocator YP_002018677.1 1931929 R 324925 CDS YP_002018678.1 194336884 6463418 complement(1932945..1934090) 1 NC_011060.1 PFAM: Extracellular ligand-binding receptor; KEGG: cch:Cag_0853 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor 1934090 6463418 Ppha_1830 Pelodictyon phaeoclathratiforme BU-1 extracellular ligand-binding receptor YP_002018678.1 1932945 R 324925 CDS YP_002018679.1 194336885 6463417 complement(1934296..1934745) 1 NC_011060.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: cph:Cpha266_1350 cupin 2, conserved barrel domain protein; cupin 1934745 6463417 Ppha_1831 Pelodictyon phaeoclathratiforme BU-1 cupin YP_002018679.1 1934296 R 324925 CDS YP_002018680.1 194336886 6463415 1935070..1936503 1 NC_011060.1 KEGG: cph:Cpha266_1230 hypothetical protein; hypothetical protein 1936503 6463415 Ppha_1832 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018680.1 1935070 D 324925 CDS YP_002018681.1 194336887 6463412 1936491..1937534 1 NC_011060.1 KEGG: cph:Cpha266_1229 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 1937534 6463412 Ppha_1833 Pelodictyon phaeoclathratiforme BU-1 succinylglutamate desuccinylase/aspartoacylase YP_002018681.1 1936491 D 324925 CDS YP_002018682.1 194336888 6463408 complement(1937612..1937770) 1 NC_011060.1 KEGG: cch:Cag_0845 transcriptional regulator, XRE family; XRE family transcriptional regulator 1937770 6463408 Ppha_1834 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018682.1 1937612 R 324925 CDS YP_002018683.1 194336889 6463405 complement(1937905..1938795) 1 NC_011060.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_2109 methyltransferase type 11; type 11 methyltransferase 1938795 6463405 Ppha_1836 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002018683.1 1937905 R 324925 CDS YP_002018684.1 194336890 6463404 complement(1938846..1939277) 1 NC_011060.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: cph:Cpha266_2114 thiol-disulphide oxidoreductase DCC; thiol-disulfide oxidoreductase DCC 1939277 6463404 Ppha_1837 Pelodictyon phaeoclathratiforme BU-1 thiol-disulfide oxidoreductase DCC YP_002018684.1 1938846 R 324925 CDS YP_002018685.1 194336891 6463403 complement(1939395..1939538) 1 NC_011060.1 hypothetical protein 1939538 6463403 Ppha_1838 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018685.1 1939395 R 324925 CDS YP_002018686.1 194336892 6463398 complement(1939899..1940294) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0845 transcriptional regulator, XRE family; XRE family transcriptional regulator 1940294 6463398 Ppha_1840 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018686.1 1939899 R 324925 CDS YP_002018687.1 194336893 6463390 complement(1940307..1940615) 1 NC_011060.1 KEGG: pfl:PFL_1053 hypothetical protein; hypothetical protein 1940615 6463390 Ppha_1841 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018687.1 1940307 R 324925 CDS YP_002018688.1 194336894 6463389 complement(1940782..1941312) 1 NC_011060.1 KEGG: plu:plu3890 hypothetical protein; hypothetical protein 1941312 6463389 Ppha_1842 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018688.1 1940782 R 324925 CDS YP_002018689.1 194336895 6463387 complement(1941309..1941587) 1 NC_011060.1 PFAM: Protein of unknown function DUF1778; KEGG: plu:plu3889 hypothetical protein; hypothetical protein 1941587 6463387 Ppha_1843 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018689.1 1941309 R 324925 CDS YP_002018690.1 194336896 6463386 1941786..1942166 1 NC_011060.1 PFAM: protein of unknown function DUF1044; KEGG: plt:Plut_1817 hypothetical protein; hypothetical protein 1942166 6463386 Ppha_1844 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018690.1 1941786 D 324925 CDS YP_002018691.1 194336897 6463384 1942159..1942476 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1818 transcriptional regulator, XRE family; XRE family transcriptional regulator 1942476 6463384 Ppha_1845 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018691.1 1942159 D 324925 CDS YP_002018692.1 194336898 6463382 complement(1942745..1943101) 1 NC_011060.1 KEGG: fps:FP1227 probable transcriptional regulator, XRE family; XRE family transcriptional regulator 1943101 6463382 Ppha_1847 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018692.1 1942745 R 324925 CDS YP_002018693.1 194336899 6463378 complement(1943194..1943646) 1 NC_011060.1 KEGG: scl:sce7684 hypothetical protein; hypothetical protein 1943646 6463378 Ppha_1848 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018693.1 1943194 R 324925 CDS YP_002018694.1 194336900 6463377 complement(1943643..1944911) 1 NC_011060.1 PFAM: SMC domain protein; KEGG: mar:MAE_39710 ATPase; SMC domain-containing protein 1944911 6463377 Ppha_1849 Pelodictyon phaeoclathratiforme BU-1 SMC domain-containing protein YP_002018694.1 1943643 R 324925 CDS YP_002018695.1 194336901 6463371 complement(1945165..1945647) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0938 helix-turn-helix domain protein; XRE family transcriptional regulator 1945647 6463371 Ppha_1851 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018695.1 1945165 R 324925 CDS YP_002018696.1 194336902 6463370 complement(1945652..1946107) 1 NC_011060.1 KEGG: bth:BT_4036 hypothetical protein; hypothetical protein 1946107 6463370 Ppha_1852 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018696.1 1945652 R 324925 CDS YP_002018697.1 194336903 6463366 complement(1946344..1946652) 1 NC_011060.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cph:Cpha266_1719 thioredoxin; thioredoxin 1946652 6463366 Ppha_1854 Pelodictyon phaeoclathratiforme BU-1 thioredoxin YP_002018697.1 1946344 R 324925 CDS YP_002018698.1 194336904 6463364 complement(1946703..1947158) 1 NC_011060.1 PFAM: OsmC family protein; KEGG: cph:Cpha266_1720 OsmC family protein; OsmC family protein 1947158 6463364 Ppha_1855 Pelodictyon phaeoclathratiforme BU-1 OsmC family protein YP_002018698.1 1946703 R 324925 CDS YP_002018699.1 194336905 6463363 1947228..1947374 1 NC_011060.1 hypothetical protein 1947374 6463363 Ppha_1856 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018699.1 1947228 D 324925 CDS YP_002018700.1 194336906 6463362 1947371..1947820 1 NC_011060.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cch:Cag_0373 6-pyruvoyltetrahydropterin synthase; hypothetical protein 1947820 6463362 Ppha_1857 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018700.1 1947371 D 324925 CDS YP_002018701.1 194336907 6463359 1947795..1948451 1 NC_011060.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1948451 folE 6463359 folE Pelodictyon phaeoclathratiforme BU-1 GTP cyclohydrolase I YP_002018701.1 1947795 D 324925 CDS YP_002018702.1 194336908 6463355 complement(1948522..1949106) 1 NC_011060.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: plt:Plut_1449 peptidase M52, hydrogen uptake protein; hydrogenase maturation protease 1949106 6463355 Ppha_1859 Pelodictyon phaeoclathratiforme BU-1 hydrogenase maturation protease YP_002018702.1 1948522 R 324925 CDS YP_002018703.1 194336909 6463353 complement(1949107..1949790) 1 NC_011060.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: cph:Cpha266_0974 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 1949790 6463353 Ppha_1860 Pelodictyon phaeoclathratiforme BU-1 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_002018703.1 1949107 R 324925 CDS YP_002018704.1 194336910 6463351 complement(1949804..1951522) 1 NC_011060.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: plt:Plut_1447 hydrogenase large chain; nickel-dependent hydrogenase large subunit 1951522 6463351 Ppha_1861 Pelodictyon phaeoclathratiforme BU-1 nickel-dependent hydrogenase large subunit YP_002018704.1 1949804 R 324925 CDS YP_002018705.1 194336911 6463350 complement(1951538..1952626) 1 NC_011060.1 KEGG: cph:Cpha266_0972 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA 1952626 6463350 Ppha_1862 Pelodictyon phaeoclathratiforme BU-1 hydrogenase (NiFe) small subunit HydA YP_002018705.1 1951538 R 324925 CDS YP_002018706.1 194336912 6463346 complement(1952831..1954372) 1 NC_011060.1 KEGG: plt:Plut_0753 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 1954372 6463346 Ppha_1863 Pelodictyon phaeoclathratiforme BU-1 proton-translocating NADH-quinone oxidoreductase subunit N YP_002018706.1 1952831 R 324925 CDS YP_002018707.1 194336913 6463344 complement(1954416..1956050) 1 NC_011060.1 KEGG: cph:Cpha266_0970 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1956050 6463344 Ppha_1864 Pelodictyon phaeoclathratiforme BU-1 proton-translocating NADH-quinone oxidoreductase subunit M YP_002018707.1 1954416 R 324925 CDS YP_002018708.1 194336914 6463339 complement(1956092..1958368) 1 NC_011060.1 KEGG: cch:Cag_0642 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1958368 6463339 Ppha_1865 Pelodictyon phaeoclathratiforme BU-1 proton-translocating NADH-quinone oxidoreductase subunit L YP_002018708.1 1956092 R 324925 CDS YP_002018709.1 194336915 6463338 complement(1958424..1958741) 1 NC_011060.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cch:Cag_0641 NADH dehydrogenase I subunit 4L; NADH-ubiquinone oxidoreductase chain 4L 1958741 6463338 Ppha_1866 Pelodictyon phaeoclathratiforme BU-1 NADH-ubiquinone oxidoreductase chain 4L YP_002018709.1 1958424 R 324925 CDS YP_002018710.1 194336916 6463336 complement(1958765..1959277) 1 NC_011060.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: pvi:Cvib_1087 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 1959277 6463336 Ppha_1867 Pelodictyon phaeoclathratiforme BU-1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_002018710.1 1958765 R 324925 CDS YP_002018711.1 194336917 6463335 complement(1959282..1959926) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0639 NADH dehydrogenase I, 23 kDa subunit; 4Fe-4S ferredoxin 1959926 6463335 Ppha_1868 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002018711.1 1959282 R 324925 CDS YP_002018712.1 194336918 6463332 complement(1959972..1961090) 1 NC_011060.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: pvi:Cvib_1089 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 1961090 6463332 Ppha_1869 Pelodictyon phaeoclathratiforme BU-1 NADH dehydrogenase (quinone) YP_002018712.1 1959972 R 324925 CDS YP_002018713.1 194336919 6463328 complement(1961087..1962289) 1 NC_011060.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: plt:Plut_0746 NADH dehydrogenase (ubiquinone); NADH dehydrogenase (quinone) 1962289 6463328 Ppha_1870 Pelodictyon phaeoclathratiforme BU-1 NADH dehydrogenase (quinone) YP_002018713.1 1961087 R 324925 CDS YP_002018714.1 194336920 6463325 complement(1962321..1962839) 1 NC_011060.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: pvi:Cvib_1091 NADH (or F420H2) dehydrogenase, subunit C; NADH (or F420H2) dehydrogenase subunit C 1962839 6463325 Ppha_1871 Pelodictyon phaeoclathratiforme BU-1 NADH (or F420H2) dehydrogenase subunit C YP_002018714.1 1962321 R 324925 CDS YP_002018715.1 194336921 6463324 complement(1962865..1963434) 1 NC_011060.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1963434 6463324 Ppha_1872 Pelodictyon phaeoclathratiforme BU-1 NADH dehydrogenase subunit B YP_002018715.1 1962865 R 324925 CDS YP_002018716.1 194336922 6463322 complement(1963463..1963894) 1 NC_011060.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: plt:Plut_0743 NADH dehydrogenase I, subunit 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1963894 6463322 Ppha_1873 Pelodictyon phaeoclathratiforme BU-1 NADH-ubiquinone/plastoquinone oxidoreductase chain 3 YP_002018716.1 1963463 R 324925 CDS YP_002018717.1 194336923 6463320 complement(1964106..1964357) 1 NC_011060.1 KEGG: cph:Cpha266_0960 hypothetical protein; hypothetical protein 1964357 6463320 Ppha_1874 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018717.1 1964106 R 324925 CDS YP_002018718.1 194336924 6463316 complement(1964364..1964969) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0959 hypothetical protein-containing protein; hypothetical protein 1964969 6463316 Ppha_1875 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018718.1 1964364 R 324925 CDS YP_002018719.1 194336925 6463315 complement(1964982..1966031) 1 NC_011060.1 PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; ferrochelatase 1966031 6463315 Ppha_1876 Pelodictyon phaeoclathratiforme BU-1 ferrochelatase YP_002018719.1 1964982 R 324925 CDS YP_002018720.1 194336926 6463314 complement(1966028..1966621) 1 NC_011060.1 KEGG: cph:Cpha266_0957 hypothetical protein; hypothetical protein 1966621 6463314 Ppha_1877 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018720.1 1966028 R 324925 CDS YP_002018721.1 194336927 6463304 1966956..1967474 1 NC_011060.1 PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0956 histidine triad (HIT) protein; histidine triad (HIT) protein 1967474 6463304 Ppha_1878 Pelodictyon phaeoclathratiforme BU-1 histidine triad (HIT) protein YP_002018721.1 1966956 D 324925 CDS YP_002018722.1 194336928 6463297 1967488..1968432 1 NC_011060.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0955 methyltransferase type 12; type 11 methyltransferase 1968432 6463297 Ppha_1879 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002018722.1 1967488 D 324925 CDS YP_002018723.1 194336929 6463296 complement(1968596..1969522) 1 NC_011060.1 PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 1969522 6463296 Ppha_1880 Pelodictyon phaeoclathratiforme BU-1 integrase catalytic subunit YP_002018723.1 1968596 R 324925 CDS YP_002018724.1 194336930 6463285 complement(1969519..1969812) 1 NC_011060.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1969812 6463285 Ppha_1881 Pelodictyon phaeoclathratiforme BU-1 transposase IS3/IS911 family protein YP_002018724.1 1969519 R 324925 CDS YP_002018725.1 194336931 6463282 complement(1969923..1970426) 1 NC_011060.1 KEGG: sus:Acid_1150 hypothetical protein; hypothetical protein 1970426 6463282 Ppha_1882 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018725.1 1969923 R 324925 CDS YP_002018726.1 194336932 6463281 complement(1970423..1971532) 1 NC_011060.1 KEGG: sus:Acid_1151 hypothetical protein; hypothetical protein 1971532 6463281 Ppha_1883 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018726.1 1970423 R 324925 CDS YP_002018727.1 194336933 6463274 complement(1971661..1973112) 1 NC_011060.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein; outer membrane efflux protein 1973112 6463274 Ppha_1884 Pelodictyon phaeoclathratiforme BU-1 outer membrane efflux protein YP_002018727.1 1971661 R 324925 CDS YP_002018728.1 194336934 6463270 complement(1973128..1974471) 1 NC_011060.1 PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0953 recombination factor protein RarA; recombination factor protein RarA 1974471 6463270 Ppha_1885 Pelodictyon phaeoclathratiforme BU-1 recombination factor protein RarA YP_002018728.1 1973128 R 324925 CDS YP_002018729.1 194336935 6463269 complement(1974472..1975128) 1 NC_011060.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1975128 6463269 Ppha_1886 Pelodictyon phaeoclathratiforme BU-1 riboflavin synthase subunit alpha YP_002018729.1 1974472 R 324925 CDS YP_002018730.1 194336936 6463267 complement(1975204..1977183) 1 NC_011060.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cph:Cpha266_0951 alpha amylase, catalytic region; alpha amylase catalytic protein 1977183 6463267 Ppha_1887 Pelodictyon phaeoclathratiforme BU-1 alpha amylase catalytic protein YP_002018730.1 1975204 R 324925 CDS YP_002018731.1 194336937 6463266 complement(1977207..1977707) 1 NC_011060.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1977707 tpx 6463266 tpx Pelodictyon phaeoclathratiforme BU-1 thiol peroxidase YP_002018731.1 1977207 R 324925 CDS YP_002018732.1 194336938 6463265 complement(1977816..1978268) 1 NC_011060.1 PFAM: DoxX family protein; KEGG: pvi:Cvib_1104 DoxX family protein; DoxX family protein 1978268 6463265 Ppha_1889 Pelodictyon phaeoclathratiforme BU-1 DoxX family protein YP_002018732.1 1977816 R 324925 CDS YP_002018733.1 194336939 6463264 complement(1978309..1979409) 1 NC_011060.1 KEGG: cph:Cpha266_0944 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1979409 6463264 Ppha_1890 Pelodictyon phaeoclathratiforme BU-1 riboflavin biosynthesis protein RibD YP_002018733.1 1978309 R 324925 CDS YP_002018734.1 194336940 6463263 complement(1979412..1979945) 1 NC_011060.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: plt:Plut_0726 deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase 1979945 6463263 Ppha_1891 Pelodictyon phaeoclathratiforme BU-1 zinc-binding CMP/dCMP deaminase YP_002018734.1 1979412 R 324925 CDS YP_002018735.1 194336941 6463259 1980037..1981677 1 NC_011060.1 PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814; hypothetical protein 1981677 6463259 Ppha_1892 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018735.1 1980037 D 324925 CDS YP_002018736.1 194336942 6463257 complement(1981661..1982071) 1 NC_011060.1 PFAM: UspA domain protein; KEGG: cte:CT1011 universal stress protein family; UspA domain-containing protein 1982071 6463257 Ppha_1893 Pelodictyon phaeoclathratiforme BU-1 UspA domain-containing protein YP_002018736.1 1981661 R 324925 CDS YP_002018737.1 194336943 6463255 complement(1982073..1983317) 1 NC_011060.1 PFAM: natural resistance-associated macrophage protein; KEGG: cte:CT1010 natural resistance-associated macrophage protein family protein; natural resistance-associated macrophage protein 1983317 6463255 Ppha_1894 Pelodictyon phaeoclathratiforme BU-1 natural resistance-associated macrophage protein YP_002018737.1 1982073 R 324925 CDS YP_002018738.1 194336944 6463253 complement(1983317..1983868) 1 NC_011060.1 PFAM: NADPH-dependent FMN reductase; KEGG: har:HEAR1499 conserved hypothetical protein, NADPH-dependent FMN reductase IPR005025; NADPH-dependent FMN reductase 1983868 6463253 Ppha_1895 Pelodictyon phaeoclathratiforme BU-1 NADPH-dependent FMN reductase YP_002018738.1 1983317 R 324925 CDS YP_002018739.1 194336945 6463250 complement(1983901..1984845) 1 NC_011060.1 KEGG: cph:Cpha266_0169 hypothetical protein; hypothetical protein 1984845 6463250 Ppha_1896 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018739.1 1983901 R 324925 CDS YP_002018740.1 194336946 6463243 1987602..1987994 1 NC_011060.1 PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0621 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 1987994 6463243 Ppha_1900 Pelodictyon phaeoclathratiforme BU-1 thioesterase superfamily protein YP_002018740.1 1987602 D 324925 CDS YP_002018741.1 194336947 6463242 complement(1988017..1989342) 1 NC_011060.1 PFAM: permease YjgP/YjgQ family protein; KEGG: pvi:Cvib_1109 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 1989342 6463242 Ppha_1901 Pelodictyon phaeoclathratiforme BU-1 YjgP/YjgQ family permease YP_002018741.1 1988017 R 324925 CDS YP_002018742.1 194336948 6463239 complement(1989832..1990425) 1 NC_011060.1 KEGG: cph:Cpha266_1944 Legionella vir region protein; hypothetical protein 1990425 6463239 Ppha_1902 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018742.1 1989832 R 324925 CDS YP_002018743.1 194336949 6463235 1991036..1991476 1 NC_011060.1 KEGG: mex:Mext_1573 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system; hypothetical protein 1991476 6463235 Ppha_1903 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018743.1 1991036 D 324925 CDS YP_002018744.1 194336950 6463232 1991457..1991747 1 NC_011060.1 KEGG: cph:Cpha266_1282 DNA-binding protein; DNA-binding protein 1991747 6463232 Ppha_1904 Pelodictyon phaeoclathratiforme BU-1 DNA-binding protein YP_002018744.1 1991457 D 324925 CDS YP_002018745.1 194336951 6463230 1991922..1992119 1 NC_011060.1 hypothetical protein 1992119 6463230 Ppha_1905 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018745.1 1991922 D 324925 CDS YP_002018746.1 194336952 6463228 1992347..1993063 1 NC_011060.1 PFAM: glutamine amidotransferase class-I; KEGG: pvi:Cvib_0576 glutamine amidotransferase class-I; glutamine amidotransferase 1993063 6463228 Ppha_1906 Pelodictyon phaeoclathratiforme BU-1 glutamine amidotransferase YP_002018746.1 1992347 D 324925 CDS YP_002018747.1 194336953 6463227 1993077..1993391 1 NC_011060.1 KEGG: cch:Cag_0876 DNA photolyase, class 2; DNA photolyase, class 2 1993391 6463227 Ppha_1907 Pelodictyon phaeoclathratiforme BU-1 DNA photolyase, class 2 YP_002018747.1 1993077 D 324925 CDS YP_002018748.1 194336954 6463224 complement(1993458..1995017) 1 NC_011060.1 PFAM: OmpA/MotB domain protein; KEGG: pau:PA14_31620 ABC-type periplasmic phosphate-binding protein; OmpA/MotB domain-containing protein 1995017 6463224 Ppha_1908 Pelodictyon phaeoclathratiforme BU-1 OmpA/MotB domain-containing protein YP_002018748.1 1993458 R 324925 CDS YP_002018749.1 194336955 6463218 complement(1995040..1997898) 1 NC_011060.1 KEGG: pna:Pnap_3261 hypothetical protein; hypothetical protein 1997898 6463218 Ppha_1909 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018749.1 1995040 R 324925 CDS YP_002018750.1 194336956 6463214 complement(2000069..2002381) 1 NC_011060.1 KEGG: cph:Cpha266_1962 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; ribonuclease R 2002381 6463214 Ppha_1911 Pelodictyon phaeoclathratiforme BU-1 ribonuclease R YP_002018750.1 2000069 R 324925 CDS YP_002018751.1 194336957 6463211 2002819..2003304 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1911 uncharacterized protein UPF0114; hypothetical protein 2003304 6463211 Ppha_1912 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018751.1 2002819 D 324925 CDS YP_002018752.1 194336958 6463209 complement(2003323..2004450) 1 NC_011060.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: plt:Plut_1521 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2004450 6463209 Ppha_1913 Pelodictyon phaeoclathratiforme BU-1 magnesium and cobalt transport protein CorA YP_002018752.1 2003323 R 324925 CDS YP_002018753.1 194336959 6463207 complement(2004498..2006885) 1 NC_011060.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: plt:Plut_1522 phosphoketolase; phosphoketolase 2006885 6463207 Ppha_1914 Pelodictyon phaeoclathratiforme BU-1 phosphoketolase YP_002018753.1 2004498 R 324925 CDS YP_002018754.1 194336960 6463205 complement(2006928..2008127) 1 NC_011060.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cte:CT1525 acetate kinase; acetate kinase 2008127 6463205 Ppha_1915 Pelodictyon phaeoclathratiforme BU-1 acetate kinase YP_002018754.1 2006928 R 324925 CDS YP_002018755.1 194336961 6463204 complement(2008964..2009278) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0914 transcriptional regulator, XRE family; XRE family transcriptional regulator 2009278 6463204 Ppha_1916 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018755.1 2008964 R 324925 CDS YP_002018756.1 194336962 6463203 complement(2009275..2009700) 1 NC_011060.1 KEGG: cch:Cag_0913 hypothetical protein; hypothetical protein 2009700 6463203 Ppha_1917 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018756.1 2009275 R 324925 CDS YP_002018757.1 194336963 6463200 complement(2009744..2010586) 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1156 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2010586 6463200 Ppha_1918 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002018757.1 2009744 R 324925 CDS YP_002018758.1 194336964 6463197 2011098..2012225 1 NC_011060.1 TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: cph:Cpha266_1918 homocitrate synthase; homocitrate synthase 2012225 6463197 Ppha_1919 Pelodictyon phaeoclathratiforme BU-1 homocitrate synthase YP_002018758.1 2011098 D 324925 CDS YP_002018759.1 194336965 6463196 2012242..2013873 1 NC_011060.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_1919 DNA-binding protein fis / transcriptional regulator, Fis family; NifA subfamily transcriptional regulator 2013873 6463196 Ppha_1920 Pelodictyon phaeoclathratiforme BU-1 NifA subfamily transcriptional regulator YP_002018759.1 2012242 D 324925 CDS YP_002018760.1 194336966 6463194 complement(2013902..2014924) 1 NC_011060.1 PFAM: cell shape determining protein MreB/Mrl; KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl; rod shape-determining protein MreB 2014924 6463194 Ppha_1921 Pelodictyon phaeoclathratiforme BU-1 rod shape-determining protein MreB YP_002018760.1 2013902 R 324925 CDS YP_002018761.1 194336967 6463193 complement(join(2015223..2016233,2016233..2016703)) 1 NC_011060.1 hypothetical protein 2016703 6463193 Ppha_1922 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018761.1 2015223 R 324925 CDS YP_002018762.1 194336968 6463192 complement(2016897..2017835) 1 NC_011060.1 PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase; aldo/keto reductase 2017835 6463192 Ppha_1923 Pelodictyon phaeoclathratiforme BU-1 aldo/keto reductase YP_002018762.1 2016897 R 324925 CDS YP_002018763.1 194336969 6463188 complement(2018009..2018413) 1 NC_011060.1 KEGG: mar:MAE_05060 type I site-specific deoxyribonuclease; type I site-specific deoxyribonuclease 2018413 6463188 Ppha_1924 Pelodictyon phaeoclathratiforme BU-1 type I site-specific deoxyribonuclease YP_002018763.1 2018009 R 324925 CDS YP_002018764.1 194336970 6463185 complement(2018816..2019136) 1 NC_011060.1 KEGG: maq:Maqu_2675 hypothetical protein; hypothetical protein 2019136 6463185 Ppha_1925 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018764.1 2018816 R 324925 CDS YP_002018765.1 194336971 6463184 complement(2019111..2019410) 1 NC_011060.1 KEGG: syf:Synpcc7942_0410 hypothetical protein; hypothetical protein 2019410 6463184 Ppha_1926 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018765.1 2019111 R 324925 CDS YP_002018766.1 194336972 6463178 complement(2020276..2020611) 1 NC_011060.1 KEGG: mhu:Mhun_2432 hypothetical protein; hypothetical protein 2020611 6463178 Ppha_1928 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018766.1 2020276 R 324925 CDS YP_002018767.1 194336973 6463162 2022043..2022318 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0650 transcriptional regulator, XRE family; XRE family transcriptional regulator 2022318 6463162 Ppha_1932 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018767.1 2022043 D 324925 CDS YP_002018768.1 194336974 6463158 complement(2022344..2022610) 1 NC_011060.1 KEGG: cch:Cag_1502 hypothetical protein; hypothetical protein 2022610 6463158 Ppha_1933 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018768.1 2022344 R 324925 CDS YP_002018769.1 194336975 6463157 2022786..2023025 1 NC_011060.1 KEGG: cau:Caur_3708 hypothetical protein; hypothetical protein 2023025 6463157 Ppha_1934 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018769.1 2022786 D 324925 CDS YP_002018770.1 194336976 6463153 2023006..2023278 1 NC_011060.1 KEGG: cch:Cag_1231 hypothetical protein; hypothetical protein 2023278 6463153 Ppha_1935 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018770.1 2023006 D 324925 CDS YP_002018771.1 194336977 6463150 complement(2023327..2023677) 1 NC_011060.1 KEGG: cph:Cpha266_1921 hypothetical protein; hypothetical protein 2023677 6463150 Ppha_1936 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018771.1 2023327 R 324925 CDS YP_002018772.1 194336978 6463149 complement(2023791..2024042) 1 NC_011060.1 hypothetical protein 2024042 6463149 Ppha_1937 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018772.1 2023791 R 324925 CDS YP_002018773.1 194336979 6463141 complement(2024923..2026623) 1 NC_011060.1 PFAM: glycoside hydrolase family 16; SMART: TIR protein; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; glycoside hydrolase family protein 2026623 6463141 Ppha_1939 Pelodictyon phaeoclathratiforme BU-1 glycoside hydrolase family protein YP_002018773.1 2024923 R 324925 CDS YP_002018774.1 194336980 6463138 complement(2026658..2027266) 1 NC_011060.1 KEGG: cph:Cpha266_0897 hypothetical protein; hypothetical protein 2027266 6463138 Ppha_1940 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018774.1 2026658 R 324925 CDS YP_002018775.1 194336981 6463136 complement(2027361..2028227) 1 NC_011060.1 KEGG: rbo:A1I_02975 hypothetical protein; hypothetical protein 2028227 6463136 Ppha_1941 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018775.1 2027361 R 324925 CDS YP_002018776.1 194336982 6463135 complement(2028547..2030100) 1 NC_011060.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0900 protein of unknown function DUF323; hypothetical protein 2030100 6463135 Ppha_1942 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018776.1 2028547 R 324925 CDS YP_002018777.1 194336983 6463128 complement(2030689..2033178) 1 NC_011060.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0900 protein of unknown function DUF323; hypothetical protein 2033178 6463128 Ppha_1944 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018777.1 2030689 R 324925 CDS YP_002018778.1 194336984 6463127 complement(2033181..2034263) 1 NC_011060.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_0899 ATPase associated with various cellular activities, AAA_5; ATPase 2034263 6463127 Ppha_1945 Pelodictyon phaeoclathratiforme BU-1 ATPase YP_002018778.1 2033181 R 324925 CDS YP_002018779.1 194336985 6463125 complement(2034279..2035199) 1 NC_011060.1 KEGG: cph:Cpha266_0898 hypothetical protein; hypothetical protein 2035199 6463125 Ppha_1946 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018779.1 2034279 R 324925 CDS YP_002018780.1 194336986 6463124 complement(2035221..2036120) 1 NC_011060.1 KEGG: rbo:A1I_02975 hypothetical protein; hypothetical protein 2036120 6463124 Ppha_1947 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018780.1 2035221 R 324925 CDS YP_002018781.1 194336987 6463121 complement(2036534..2036758) 1 NC_011060.1 hypothetical protein 2036758 6463121 Ppha_1948 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018781.1 2036534 R 324925 CDS YP_002018782.1 194336988 6463120 2036852..2037676 1 NC_011060.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; nitrogenase reductase 2037676 nifH 6463120 nifH Pelodictyon phaeoclathratiforme BU-1 nitrogenase reductase YP_002018782.1 2036852 D 324925 CDS YP_002018783.1 194336989 6463119 2037695..2038051 1 NC_011060.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1344 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2038051 6463119 Ppha_1950 Pelodictyon phaeoclathratiforme BU-1 nitrogen regulatory protein P-II YP_002018783.1 2037695 D 324925 CDS YP_002018784.1 194336990 6463112 2038052..2038429 1 NC_011060.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1535 nitrogen regulatory protein, P-II family; nitrogen regulatory protein P-II 2038429 6463112 Ppha_1951 Pelodictyon phaeoclathratiforme BU-1 nitrogen regulatory protein P-II YP_002018784.1 2038052 D 324925 CDS YP_002018785.1 194336991 6463080 2038466..2040100 1 NC_011060.1 KEGG: cph:Cpha266_0741 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha 2040100 6463080 Ppha_1952 Pelodictyon phaeoclathratiforme BU-1 nitrogenase molybdenum-iron protein subunit alpha YP_002018785.1 2038466 D 324925 CDS YP_002018786.1 194336992 6463077 2040127..2041509 1 NC_011060.1 KEGG: cph:Cpha266_0740 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta 2041509 6463077 Ppha_1953 Pelodictyon phaeoclathratiforme BU-1 nitrogenase molybdenum-iron protein subunit beta YP_002018786.1 2040127 D 324925 CDS YP_002018787.1 194336993 6463076 2041617..2042978 1 NC_011060.1 KEGG: cch:Cag_1249 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase MoFe cofactor biosynthesis protein NifE 2042978 6463076 Ppha_1954 Pelodictyon phaeoclathratiforme BU-1 nitrogenase MoFe cofactor biosynthesis protein NifE YP_002018787.1 2041617 D 324925 CDS YP_002018788.1 194336994 6463074 2042975..2044327 1 NC_011060.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_0738 nitrogenase; nitrogenase 2044327 6463074 Ppha_1955 Pelodictyon phaeoclathratiforme BU-1 nitrogenase YP_002018788.1 2042975 D 324925 CDS YP_002018789.1 194336995 6463072 2044340..2045611 1 NC_011060.1 KEGG: cph:Cpha266_0737 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; nitrogenase cofactor biosynthesis protein NifB 2045611 6463072 Ppha_1956 Pelodictyon phaeoclathratiforme BU-1 nitrogenase cofactor biosynthesis protein NifB YP_002018789.1 2044340 D 324925 CDS YP_002018790.1 194336996 6463069 2045701..2046009 1 NC_011060.1 KEGG: cph:Cpha266_0736 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 2046009 6463069 Ppha_1957 Pelodictyon phaeoclathratiforme BU-1 ferredoxin, 2Fe-2S YP_002018790.1 2045701 D 324925 CDS YP_002018791.1 194336997 6463067 complement(2046067..2046234) 1 NC_011060.1 hypothetical protein 2046234 6463067 Ppha_1958 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018791.1 2046067 R 324925 CDS YP_002018792.1 194336998 6463066 2046338..2047504 1 NC_011060.1 KEGG: dol:Dole_0644 hypothetical protein; hypothetical protein 2047504 6463066 Ppha_1959 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018792.1 2046338 D 324925 CDS YP_002018793.1 194336999 6463061 2047695..2048222 1 NC_011060.1 KEGG: cte:CT1002 hypothetical protein; hypothetical protein 2048222 6463061 Ppha_1960 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018793.1 2047695 D 324925 CDS YP_002018794.1 194337000 6463059 2048212..2048628 1 NC_011060.1 KEGG: cph:Cpha266_1572 hypothetical protein; hypothetical protein 2048628 6463059 Ppha_1961 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018794.1 2048212 D 324925 CDS YP_002018795.1 194337001 6463051 complement(2048756..2049631) 1 NC_011060.1 metalloprotease; heat shock protein HtpX 2049631 6463051 Ppha_1962 Pelodictyon phaeoclathratiforme BU-1 heat shock protein HtpX YP_002018795.1 2048756 R 324925 CDS YP_002018796.1 194337002 6463050 2050220..2051827 1 NC_011060.1 KEGG: pvi:Cvib_0760 cytochrome c family protein; cytochrome c family protein 2051827 6463050 Ppha_1963 Pelodictyon phaeoclathratiforme BU-1 cytochrome c family protein YP_002018796.1 2050220 D 324925 CDS YP_002018797.1 194337003 6463043 2051824..2052429 1 NC_011060.1 PFAM: cytochrome B561; KEGG: plt:Plut_1198 hydrogenase, b-type cytochrome subunit; cytochrome B561 2052429 6463043 Ppha_1964 Pelodictyon phaeoclathratiforme BU-1 cytochrome B561 YP_002018797.1 2051824 D 324925 CDS YP_002018798.1 194337004 6463040 2052480..2052740 1 NC_011060.1 KEGG: cph:Cpha266_2106 hypothetical protein; hypothetical protein 2052740 6463040 Ppha_1965 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018798.1 2052480 D 324925 CDS YP_002018799.1 194337005 6463031 2053334..2053750 1 NC_011060.1 KEGG: plt:Plut_0716 hypothetical protein; hypothetical protein 2053750 6463031 Ppha_1968 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018799.1 2053334 D 324925 CDS YP_002018800.1 194337006 6463028 2053740..2054630 1 NC_011060.1 PFAM: Domain of unknown function DUF1814; KEGG: plt:Plut_0717 hypothetical protein; hypothetical protein 2054630 6463028 Ppha_1969 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018800.1 2053740 D 324925 CDS YP_002018801.1 194337007 6463027 complement(2055111..2055509) 1 NC_011060.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: cch:Cag_1938 Sel1-like repeat; Sel1 domain-containing protein repeat-containing protein 2055509 6463027 Ppha_1970 Pelodictyon phaeoclathratiforme BU-1 Sel1 domain-containing protein repeat-containing protein YP_002018801.1 2055111 R 324925 CDS YP_002018802.1 194337008 6463026 complement(2055634..2055984) 1 NC_011060.1 KEGG: cph:Cpha266_1695 hypothetical protein; hypothetical protein 2055984 6463026 Ppha_1971 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018802.1 2055634 R 324925 CDS YP_002018803.1 194337009 6463025 complement(2056106..2057155) 1 NC_011060.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: net:Neut_2415 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2057155 6463025 Ppha_1972 Pelodictyon phaeoclathratiforme BU-1 filamentation induced by cAMP protein fic YP_002018803.1 2056106 R 324925 CDS YP_002018804.1 194337010 6463016 2057866..2058225 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; KEGG: cte:CT1461 kinesin light chain-related protein; hypothetical protein 2058225 6463016 Ppha_1975 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018804.1 2057866 D 324925 CDS YP_002018805.1 194337011 6463014 complement(2058401..2059360) 1 NC_011060.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_1490 protein of unknown function DUF323; hypothetical protein 2059360 6463014 Ppha_1976 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018805.1 2058401 R 324925 CDS YP_002018806.1 194337012 6463013 complement(join(2059386..2059949,2059949..2060380)) 1 NC_011060.1 KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein 2060380 6463013 Ppha_1977 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018806.1 2059386 R 324925 CDS YP_002018807.1 194337013 6463012 complement(2060437..2061729) 1 NC_011060.1 KEGG: cph:Cpha266_1490 protein of unknown function DUF323; hypothetical protein 2061729 6463012 Ppha_1978 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018807.1 2060437 R 324925 CDS YP_002018808.1 194337014 6463011 complement(2061822..2064512) 1 NC_011060.1 PFAM: type III restriction protein res subunit; KEGG: mca:MCA0026 type III restriction-modification system, R subunit; type III restriction protein res subunit 2064512 6463011 Ppha_1979 Pelodictyon phaeoclathratiforme BU-1 type III restriction protein res subunit YP_002018808.1 2061822 R 324925 CDS YP_002018809.1 194337015 6463010 complement(2064594..2066237) 1 NC_011060.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: btr:Btr_1180 methyltransferase; DNA methylase N-4/N-6 domain-containing protein 2066237 6463010 Ppha_1980 Pelodictyon phaeoclathratiforme BU-1 DNA methylase N-4/N-6 domain-containing protein YP_002018809.1 2064594 R 324925 CDS YP_002018810.1 194337016 6463007 complement(2066363..2066572) 1 NC_011060.1 hypothetical protein 2066572 6463007 Ppha_1981 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018810.1 2066363 R 324925 CDS YP_002018811.1 194337017 6463006 complement(2066623..2066973) 1 NC_011060.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1951 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 2066973 6463006 Ppha_1982 Pelodictyon phaeoclathratiforme BU-1 XRE family plasmid maintenance system antidote protein YP_002018811.1 2066623 R 324925 CDS YP_002018812.1 194337018 6463004 complement(2066985..2069885) 1 NC_011060.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1953 helicase domain protein; SNF2-like protein 2069885 6463004 Ppha_1983 Pelodictyon phaeoclathratiforme BU-1 SNF2-like protein YP_002018812.1 2066985 R 324925 CDS YP_002018813.1 194337019 6463003 complement(2069955..2070110) 1 NC_011060.1 hypothetical protein 2070110 6463003 Ppha_1984 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018813.1 2069955 R 324925 CDS YP_002018814.1 194337020 6463002 complement(2070148..2072100) 1 NC_011060.1 KEGG: plt:Plut_1351 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2072100 6463002 Ppha_1985 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor hybrid histidine kinase YP_002018814.1 2070148 R 324925 CDS YP_002018815.1 194337021 6463000 2072357..2073166 1 NC_011060.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: cph:Cpha266_0735 transcriptional regulator, ModE family; ModE family transcriptional regulator 2073166 6463000 Ppha_1986 Pelodictyon phaeoclathratiforme BU-1 ModE family transcriptional regulator YP_002018815.1 2072357 D 324925 CDS YP_002018816.1 194337022 6462998 complement(2073373..2074251) 1 NC_011060.1 TIGRFAM: TonB family protein; KEGG: plt:Plut_1585 TonB-like; TonB family protein 2074251 6462998 Ppha_1987 Pelodictyon phaeoclathratiforme BU-1 TonB family protein YP_002018816.1 2073373 R 324925 CDS YP_002018817.1 194337023 6462996 complement(2074257..2075252) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1755 ABC transporter, ATP-binding protein; ABC transporter-like protein 2075252 6462996 Ppha_1988 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018817.1 2074257 R 324925 CDS YP_002018818.1 194337024 6462994 complement(2075249..2075947) 1 NC_011060.1 PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein; cobalamin synthesis protein P47K 2075947 6462994 Ppha_1989 Pelodictyon phaeoclathratiforme BU-1 cobalamin synthesis protein P47K YP_002018818.1 2075249 R 324925 CDS YP_002018819.1 194337025 6462992 complement(2075960..2077015) 1 NC_011060.1 KEGG: cte:CT1757 hypothetical protein; hypothetical protein 2077015 6462992 Ppha_1990 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018819.1 2075960 R 324925 CDS YP_002018820.1 194337026 6462991 complement(2077048..2078181) 1 NC_011060.1 PFAM: periplasmic binding protein; KEGG: cph:Cpha266_0448 periplasmic binding protein; periplasmic binding protein 2078181 6462991 Ppha_1991 Pelodictyon phaeoclathratiforme BU-1 periplasmic binding protein YP_002018820.1 2077048 R 324925 CDS YP_002018821.1 194337027 6462990 complement(2078270..2080333) 1 NC_011060.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family; TonB-dependent receptor plug 2080333 6462990 Ppha_1992 Pelodictyon phaeoclathratiforme BU-1 TonB-dependent receptor plug YP_002018821.1 2078270 R 324925 CDS YP_002018822.1 194337028 6462989 complement(2080335..2081144) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0446 ABC transporter related; ABC transporter-like protein 2081144 6462989 Ppha_1993 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018822.1 2080335 R 324925 CDS YP_002018823.1 194337029 6462988 complement(2081144..2082139) 1 NC_011060.1 PFAM: transport system permease; KEGG: cph:Cpha266_0445 transport system permease; transport system permease 2082139 6462988 Ppha_1994 Pelodictyon phaeoclathratiforme BU-1 transport system permease YP_002018823.1 2081144 R 324925 CDS YP_002018824.1 194337030 6462987 complement(2082527..2083396) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0438 ABC transporter related; ABC transporter-like protein 2083396 6462987 Ppha_1995 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018824.1 2082527 R 324925 CDS YP_002018825.1 194337031 6462984 complement(2083393..2083824) 1 NC_011060.1 PFAM: TOBE domain protein; KEGG: cph:Cpha266_0439 TOBE domain protein; TOBE domain-containing protein 2083824 6462984 Ppha_1996 Pelodictyon phaeoclathratiforme BU-1 TOBE domain-containing protein YP_002018825.1 2083393 R 324925 CDS YP_002018826.1 194337032 6462979 2084246..2086471 1 NC_011060.1 KEGG: cph:Cpha266_0440 TonB-dependent receptor; TonB-dependent receptor 2086471 6462979 Ppha_1997 Pelodictyon phaeoclathratiforme BU-1 TonB-dependent receptor YP_002018826.1 2084246 D 324925 CDS YP_002018827.1 194337033 6462978 2086575..2087300 1 NC_011060.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: cph:Cpha266_0441 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2087300 6462978 Ppha_1998 Pelodictyon phaeoclathratiforme BU-1 molybdenum ABC transporter periplasmic molybdate-binding protein YP_002018827.1 2086575 D 324925 CDS YP_002018828.1 194337034 6462973 2087300..2087980 1 NC_011060.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_0442 transcriptional regulator, Fis family; binding-protein-dependent transport system inner membrane protein 2087980 6462973 Ppha_1999 Pelodictyon phaeoclathratiforme BU-1 binding-protein-dependent transport system inner membrane protein YP_002018828.1 2087300 D 324925 CDS YP_002018829.1 194337035 6462971 2088323..2089276 1 NC_011060.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: plt:Plut_1551 cysteine synthase K/M/A; cysteine synthase A 2089276 6462971 Ppha_2000 Pelodictyon phaeoclathratiforme BU-1 cysteine synthase A YP_002018829.1 2088323 D 324925 CDS YP_002018830.1 194337036 6462966 2089589..2090725 1 NC_011060.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cph:Cpha266_0732 cystathionine gamma-synthase; cystathionine gamma-synthase 2090725 6462966 Ppha_2001 Pelodictyon phaeoclathratiforme BU-1 cystathionine gamma-synthase YP_002018830.1 2089589 D 324925 CDS YP_002018831.1 194337037 6462965 2090890..2091150 1 NC_011060.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cph:Cpha266_0731 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 2091150 6462965 Ppha_2002 Pelodictyon phaeoclathratiforme BU-1 thiamine biosynthesis protein ThiS YP_002018831.1 2090890 D 324925 CDS YP_002018832.1 194337038 6462963 2091166..2091945 1 NC_011060.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2091945 thiG 6462963 thiG Pelodictyon phaeoclathratiforme BU-1 thiazole synthase YP_002018832.1 2091166 D 324925 CDS YP_002018833.1 194337039 6462958 2091942..2093042 1 NC_011060.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2093042 thiH 6462958 thiH Pelodictyon phaeoclathratiforme BU-1 thiamine biosynthesis protein ThiH YP_002018833.1 2091942 D 324925 CDS YP_002018834.1 194337040 6462957 2093033..2093782 1 NC_011060.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: cph:Cpha266_0728 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 2093782 6462957 Ppha_2005 Pelodictyon phaeoclathratiforme BU-1 UBA/THIF-type NAD/FAD binding protein YP_002018834.1 2093033 D 324925 CDS YP_002018835.1 194337041 6462955 2093813..2094499 1 NC_011060.1 KEGG: gfo:GFO_1511 conserved hypothetical protein, membrane; hypothetical protein 2094499 6462955 Ppha_2006 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018835.1 2093813 D 324925 CDS YP_002018836.1 194337042 6462953 2094639..2096006 1 NC_011060.1 KEGG: cch:Cag_0872 hypothetical protein; hypothetical protein 2096006 6462953 Ppha_2007 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018836.1 2094639 D 324925 CDS YP_002018837.1 194337043 6462952 2096003..2098195 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 hypothetical protein; hypothetical protein 2098195 6462952 Ppha_2008 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018837.1 2096003 D 324925 CDS YP_002018838.1 194337044 6462951 complement(2098242..2098919) 1 NC_011060.1 KEGG: rso:RS01674 probable transmembrane protein; hypothetical protein 2098919 6462951 Ppha_2009 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018838.1 2098242 R 324925 CDS YP_002018839.1 194337045 6462949 2099255..2102083 1 NC_011060.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2102083 sucA 6462949 sucA Pelodictyon phaeoclathratiforme BU-1 2-oxoglutarate dehydrogenase E1 component YP_002018839.1 2099255 D 324925 CDS YP_002018840.1 194337046 6462947 2102093..2103370 1 NC_011060.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: reu:Reut_A2046 dihydrolipoamide acetyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2103370 6462947 Ppha_2011 Pelodictyon phaeoclathratiforme BU-1 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase YP_002018840.1 2102093 D 324925 CDS YP_002018841.1 194337047 6462946 2103386..2104822 1 NC_011060.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc1271 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2104822 6462946 Ppha_2012 Pelodictyon phaeoclathratiforme BU-1 dihydrolipoamide dehydrogenase YP_002018841.1 2103386 D 324925 CDS YP_002018842.1 194337048 6462939 join(2105440..2105871,2105871..2106434) 1 NC_011060.1 KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein 2106434 6462939 Ppha_2014 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018842.1 2105440 D 324925 CDS YP_002018843.1 194337049 6462935 complement(2106539..2107402) 1 NC_011060.1 PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; inner-membrane translocator 2107402 6462935 Ppha_2015 Pelodictyon phaeoclathratiforme BU-1 inner-membrane translocator YP_002018843.1 2106539 R 324925 CDS YP_002018844.1 194337050 6462928 complement(2107402..2108286) 1 NC_011060.1 PFAM: inner-membrane translocator; KEGG: cpy:Cphy_3535 inner-membrane translocator; inner-membrane translocator 2108286 6462928 Ppha_2016 Pelodictyon phaeoclathratiforme BU-1 inner-membrane translocator YP_002018844.1 2107402 R 324925 CDS YP_002018845.1 194337051 6462927 complement(join(2108740..2109303,2109303..2109734)) 1 NC_011060.1 KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein 2109734 6462927 Ppha_2017 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018845.1 2108740 R 324925 CDS YP_002018846.1 194337052 6462926 complement(2109930..2110454) 1 NC_011060.1 KEGG: dsh:Dshi_3149 peptidase M15D VanX D-ala-D-ala dipeptidase; peptidase M15D VanX D-ala-D-ala dipeptidase 2110454 6462926 Ppha_2018 Pelodictyon phaeoclathratiforme BU-1 peptidase M15D VanX D-ala-D-ala dipeptidase YP_002018846.1 2109930 R 324925 CDS YP_002018847.1 194337053 6462924 complement(2110507..2112084) 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM protein; radical SAM protein 2112084 6462924 Ppha_2019 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002018847.1 2110507 R 324925 CDS YP_002018848.1 194337054 6462921 complement(2112068..2112250) 1 NC_011060.1 hypothetical protein 2112250 6462921 Ppha_2020 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018848.1 2112068 R 324925 CDS YP_002018849.1 194337055 6462917 complement(2112285..2114246) 1 NC_011060.1 KEGG: pyo:PY02104 rhoptry protein Pfam: ATP-synt_E_2 Myosin_tail_1 DUF1374 MttA_Hcf106 AIP3 FCH DUF148 RasGAP Phg_2220_C MACPF VAR1 EAP30 Syntaxin-6_N PROSITE: ASN_RICH LYS_RICH PHE_RICH; hypothetical protein 2114246 6462917 Ppha_2021 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018849.1 2112285 R 324925 CDS YP_002018850.1 194337056 6462913 complement(2114243..2115364) 1 NC_011060.1 PFAM: Extracellular ligand-binding receptor; KEGG: cbf:CLI_0539 high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein; extracellular ligand-binding receptor 2115364 6462913 Ppha_2022 Pelodictyon phaeoclathratiforme BU-1 extracellular ligand-binding receptor YP_002018850.1 2114243 R 324925 CDS YP_002018851.1 194337057 6462912 complement(2115375..2116013) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0447 ATP binding protein of ABC transporter for branched-chain amino acids; ABC transporter-like protein 2116013 6462912 Ppha_2023 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018851.1 2115375 R 324925 CDS YP_002018852.1 194337058 6462910 complement(2116036..2116710) 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cjd:JJD26997_0773 high affinity branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 2116710 6462910 Ppha_2024 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002018852.1 2116036 R 324925 CDS YP_002018853.1 194337059 6462909 complement(2117098..2117343) 1 NC_011060.1 hypothetical protein 2117343 6462909 Ppha_2025 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018853.1 2117098 R 324925 CDS YP_002018854.1 194337060 6462901 complement(2117404..2117886) 1 NC_011060.1 hypothetical protein 2117886 6462901 Ppha_2026 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018854.1 2117404 R 324925 CDS YP_002018855.1 194337061 6462895 complement(2118667..2120313) 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein 2120313 6462895 Ppha_2029 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002018855.1 2118667 R 324925 CDS YP_002018856.1 194337062 6462894 2120595..2120888 1 NC_011060.1 PFAM: plasmid maintenance system killer; KEGG: hne:HNE_2665 plasmid maintenance system killer protein; plasmid maintenance system killer protein 2120888 6462894 Ppha_2030 Pelodictyon phaeoclathratiforme BU-1 plasmid maintenance system killer protein YP_002018856.1 2120595 D 324925 CDS YP_002018857.1 194337063 6462889 2120908..2121228 1 NC_011060.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sen:SACE_0851 plasmid maintenance system antidote protein; XRE family plasmid maintenance system antidote protein 2121228 6462889 Ppha_2031 Pelodictyon phaeoclathratiforme BU-1 XRE family plasmid maintenance system antidote protein YP_002018857.1 2120908 D 324925 CDS YP_002018858.1 194337064 6462875 2121595..2121816 1 NC_011060.1 hypothetical protein 2121816 6462875 Ppha_2033 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018858.1 2121595 D 324925 CDS YP_002018859.1 194337065 6462874 2121813..2122217 1 NC_011060.1 KEGG: mar:MAE_40420 hypothetical protein; hypothetical protein 2122217 6462874 Ppha_2034 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018859.1 2121813 D 324925 CDS YP_002018860.1 194337066 6462873 2122302..2123078 1 NC_011060.1 PFAM: Protein of unkown function DUF1819 inner membrane; KEGG: swo:Swol_0988 hypothetical protein; hypothetical protein 2123078 6462873 Ppha_2035 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018860.1 2122302 D 324925 CDS YP_002018861.1 194337067 6462872 2123062..2123655 1 NC_011060.1 KEGG: swo:Swol_0989 hypothetical protein; hypothetical protein 2123655 6462872 Ppha_2036 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018861.1 2123062 D 324925 CDS YP_002018862.1 194337068 6462869 2123667..2127302 1 NC_011060.1 KEGG: swo:Swol_0990 hypothetical protein; hypothetical protein 2127302 6462869 Ppha_2037 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018862.1 2123667 D 324925 CDS YP_002018863.1 194337069 6462866 2127323..2131048 1 NC_011060.1 KEGG: swo:Swol_0997 hypothetical protein; hypothetical protein 2131048 6462866 Ppha_2038 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018863.1 2127323 D 324925 CDS YP_002018864.1 194337070 6462865 2131061..2132263 1 NC_011060.1 PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0874 hypothetical protein; hypothetical protein 2132263 6462865 Ppha_2039 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018864.1 2131061 D 324925 CDS YP_002018865.1 194337071 6462862 2132253..2134475 1 NC_011060.1 PFAM: PglZ domain protein; KEGG: swo:Swol_0998 hypothetical protein; PglZ domain-containing protein 2134475 6462862 Ppha_2040 Pelodictyon phaeoclathratiforme BU-1 PglZ domain-containing protein YP_002018865.1 2132253 D 324925 CDS YP_002018866.1 194337072 6462857 2134506..2136560 1 NC_011060.1 KEGG: swo:Swol_0999 ATP-dependent protease La; ATP-dependent protease La 2136560 6462857 Ppha_2041 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent protease La YP_002018866.1 2134506 D 324925 CDS YP_002018867.1 194337073 6462851 2136671..2136919 1 NC_011060.1 hypothetical protein 2136919 6462851 Ppha_2042 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018867.1 2136671 D 324925 CDS YP_002018868.1 194337074 6462849 2137017..2137376 1 NC_011060.1 KEGG: mgm:Mmc1_0221 hypothetical protein; hypothetical protein 2137376 6462849 Ppha_2043 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018868.1 2137017 D 324925 CDS YP_002018869.1 194337075 6462848 2138183..2138371 1 NC_011060.1 KEGG: mar:MAE_56120 hypothetical protein; hypothetical protein 2138371 6462848 Ppha_2044 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018869.1 2138183 D 324925 CDS YP_002018870.1 194337076 6462845 complement(2138688..2139443) 1 NC_011060.1 PFAM: HipA domain protein; KEGG: cch:Cag_1275 hypothetical protein; HipA domain-containing protein 2139443 6462845 Ppha_2046 Pelodictyon phaeoclathratiforme BU-1 HipA domain-containing protein YP_002018870.1 2138688 R 324925 CDS YP_002018871.1 194337077 6462844 complement(2139456..2139707) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1274 transcriptional regulator, XRE family; XRE family transcriptional regulator 2139707 6462844 Ppha_2047 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018871.1 2139456 R 324925 CDS YP_002018872.1 194337078 6462843 complement(2139863..2140906) 1 NC_011060.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cph:Cpha266_0725 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE 2140906 6462843 Ppha_2048 Pelodictyon phaeoclathratiforme BU-1 hydrogenase expression/formation protein HypE YP_002018872.1 2139863 R 324925 CDS YP_002018873.1 194337079 6462842 complement(2140903..2141997) 1 NC_011060.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: plt:Plut_1455 hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 2141997 6462842 Ppha_2049 Pelodictyon phaeoclathratiforme BU-1 hydrogenase expression/formation protein HypD YP_002018873.1 2140903 R 324925 CDS YP_002018874.1 194337080 6462839 complement(2142009..2142281) 1 NC_011060.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cph:Cpha266_0723 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF 2142281 6462839 Ppha_2050 Pelodictyon phaeoclathratiforme BU-1 hydrogenase assembly chaperone HypC/HupF YP_002018874.1 2142009 R 324925 CDS YP_002018875.1 194337081 6462838 complement(2142372..2144921) 1 NC_011060.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cch:Cag_0533 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF 2144921 6462838 Ppha_2051 Pelodictyon phaeoclathratiforme BU-1 (NiFe) hydrogenase maturation protein HypF YP_002018875.1 2142372 R 324925 CDS YP_002018876.1 194337082 6462837 complement(2144882..2145691) 1 NC_011060.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cph:Cpha266_0721 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB 2145691 6462837 Ppha_2052 Pelodictyon phaeoclathratiforme BU-1 hydrogenase nickel incorporation protein HypB YP_002018876.1 2144882 R 324925 CDS YP_002018877.1 194337083 6462836 complement(2145696..2146049) 1 NC_011060.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: plt:Plut_1459 hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA 2146049 6462836 Ppha_2053 Pelodictyon phaeoclathratiforme BU-1 hydrogenase nickel incorporation protein HypA YP_002018877.1 2145696 R 324925 CDS YP_002018878.1 194337084 6462835 complement(2146171..2146332) 1 NC_011060.1 hypothetical protein 2146332 6462835 Ppha_2054 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018878.1 2146171 R 324925 CDS YP_002018879.1 194337085 6462834 2146414..2147349 1 NC_011060.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2147349 pyrB 6462834 pyrB Pelodictyon phaeoclathratiforme BU-1 aspartate carbamoyltransferase catalytic subunit YP_002018879.1 2146414 D 324925 CDS YP_002018880.1 194337086 6462833 2147366..2148280 1 NC_011060.1 KEGG: cph:Cpha266_0718 hypothetical protein; hypothetical protein 2148280 6462833 Ppha_2056 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018880.1 2147366 D 324925 CDS YP_002018881.1 194337087 6462831 complement(2148378..2148884) 1 NC_011060.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0717 NUDIX hydrolase; NUDIX hydrolase 2148884 6462831 Ppha_2057 Pelodictyon phaeoclathratiforme BU-1 NUDIX hydrolase YP_002018881.1 2148378 R 324925 CDS YP_002018882.1 194337088 6462829 2148944..2149150 1 NC_011060.1 hypothetical protein 2149150 6462829 Ppha_2058 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018882.1 2148944 D 324925 CDS YP_002018883.1 194337089 6462827 2149147..2150250 1 NC_011060.1 KEGG: cph:Cpha266_0714 hypothetical protein; hypothetical protein 2150250 6462827 Ppha_2059 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018883.1 2149147 D 324925 CDS YP_002018884.1 194337090 6462826 2150579..2151016 1 NC_011060.1 PFAM: UspA domain protein; KEGG: cph:Cpha266_0713 UspA domain protein; UspA domain-containing protein 2151016 6462826 Ppha_2060 Pelodictyon phaeoclathratiforme BU-1 UspA domain-containing protein YP_002018884.1 2150579 D 324925 CDS YP_002018885.1 194337091 6462825 2151097..2152677 1 NC_011060.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cch:Cag_1339 sugar transport protein; major facilitator superfamily protein 2152677 6462825 Ppha_2061 Pelodictyon phaeoclathratiforme BU-1 major facilitator superfamily protein YP_002018885.1 2151097 D 324925 CDS YP_002018886.1 194337092 6462824 2152704..2152928 1 NC_011060.1 KEGG: cch:Cag_1340 hypothetical protein; hypothetical protein 2152928 6462824 Ppha_2062 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018886.1 2152704 D 324925 CDS YP_002018887.1 194337093 6462822 2153031..2154914 1 NC_011060.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2154914 uvrC 6462822 uvrC Pelodictyon phaeoclathratiforme BU-1 excinuclease ABC subunit C YP_002018887.1 2153031 D 324925 CDS YP_002018888.1 194337094 6462821 2154933..2155043 1 NC_011060.1 hypothetical protein 2155043 6462821 Ppha_2064 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018888.1 2154933 D 324925 CDS YP_002018889.1 194337095 6462820 2155030..2156427 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0709 hypothetical protein; hypothetical protein 2156427 6462820 Ppha_2065 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018889.1 2155030 D 324925 CDS YP_002018890.1 194337096 6462819 2156424..2157275 1 NC_011060.1 KEGG: cch:Cag_1345 quinate/shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; shikimate 5-dehydrogenase 2157275 6462819 Ppha_2066 Pelodictyon phaeoclathratiforme BU-1 shikimate 5-dehydrogenase YP_002018890.1 2156424 D 324925 CDS YP_002018891.1 194337097 6462818 2157303..2157812 1 NC_011060.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2157812 6462818 Ppha_2067 Pelodictyon phaeoclathratiforme BU-1 lipoprotein signal peptidase YP_002018891.1 2157303 D 324925 CDS YP_002018892.1 194337098 6462816 2157802..2158575 1 NC_011060.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cph:Cpha266_0706 hydrolase, TatD family; TatD family hydrolase 2158575 6462816 Ppha_2068 Pelodictyon phaeoclathratiforme BU-1 TatD family hydrolase YP_002018892.1 2157802 D 324925 CDS YP_002018893.1 194337099 6462815 2158693..2159385 1 NC_011060.1 KEGG: cch:Cag_1348 hypothetical protein; hypothetical protein 2159385 6462815 Ppha_2069 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018893.1 2158693 D 324925 CDS YP_002018894.1 194337100 6462814 2159419..2159910 1 NC_011060.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cph:Cpha266_0704 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2159910 6462814 Ppha_2070 Pelodictyon phaeoclathratiforme BU-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_002018894.1 2159419 D 324925 CDS YP_002018895.1 194337101 6462813 2159925..2160614 1 NC_011060.1 PFAM: alanine racemase domain protein; KEGG: pvi:Cvib_0534 alanine racemase domain protein; alanine racemase domain-containing protein 2160614 6462813 Ppha_2071 Pelodictyon phaeoclathratiforme BU-1 alanine racemase domain-containing protein YP_002018895.1 2159925 D 324925 CDS YP_002018896.1 194337102 6462809 2160682..2161503 1 NC_011060.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2161503 6462809 Ppha_2072 Pelodictyon phaeoclathratiforme BU-1 purine nucleoside phosphorylase YP_002018896.1 2160682 D 324925 CDS YP_002018897.1 194337103 6462808 2161520..2162584 1 NC_011060.1 KEGG: cch:Cag_1355 initiation factor 2B alpha/beta/delta; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 2162584 6462808 Ppha_2073 Pelodictyon phaeoclathratiforme BU-1 translation initiation factor, aIF-2BI family YP_002018897.1 2161520 D 324925 CDS YP_002018898.1 194337104 6462806 2162918..2164309 1 NC_011060.1 PFAM: cytochrome c oxidase subunit I; KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I; cytochrome c oxidase subunit I 2164309 6462806 Ppha_2074 Pelodictyon phaeoclathratiforme BU-1 cytochrome c oxidase subunit I YP_002018898.1 2162918 D 324925 CDS YP_002018899.1 194337105 6462805 2164340..2165011 1 NC_011060.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2165011 6462805 Ppha_2075 Pelodictyon phaeoclathratiforme BU-1 cbb3-type cytochrome c oxidase subunit II YP_002018899.1 2164340 D 324925 CDS YP_002018900.1 194337106 6462802 2165008..2165151 1 NC_011060.1 KEGG: afw:Anae109_1221 hypothetical protein; hypothetical protein 2165151 6462802 Ppha_2076 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018900.1 2165008 D 324925 CDS YP_002018901.1 194337107 6462800 2165195..2165656 1 NC_011060.1 PFAM: cytochrome c class I; KEGG: cch:Cag_1358 probable cb-type cytochrome c oxidase subunit III; cytochrome c class I 2165656 6462800 Ppha_2077 Pelodictyon phaeoclathratiforme BU-1 cytochrome c class I YP_002018901.1 2165195 D 324925 CDS YP_002018902.1 194337108 6462799 2165684..2166787 1 NC_011060.1 KEGG: cch:Cag_1359 polyferredoxin-like; polyferredoxin-like protein 2166787 6462799 Ppha_2078 Pelodictyon phaeoclathratiforme BU-1 polyferredoxin-like protein YP_002018902.1 2165684 D 324925 CDS YP_002018903.1 194337109 6462798 2166784..2167221 1 NC_011060.1 KEGG: cch:Cag_1367 hypothetical protein; hypothetical protein 2167221 6462798 Ppha_2079 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018903.1 2166784 D 324925 CDS YP_002018904.1 194337110 6462797 2167200..2167625 1 NC_011060.1 KEGG: cch:Cag_1368 hypothetical protein; hypothetical protein 2167625 6462797 Ppha_2080 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018904.1 2167200 D 324925 CDS YP_002018905.1 194337111 6462795 2167615..2170041 1 NC_011060.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cch:Cag_1369 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2170041 6462795 Ppha_2081 Pelodictyon phaeoclathratiforme BU-1 heavy metal translocating P-type ATPase YP_002018905.1 2167615 D 324925 CDS YP_002018906.1 194337112 6462794 2170055..2170246 1 NC_011060.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cch:Cag_1370 cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 2170246 6462794 Ppha_2082 Pelodictyon phaeoclathratiforme BU-1 cbb3-type cytochrome oxidase maturation protein YP_002018906.1 2170055 D 324925 CDS YP_002018907.1 194337113 6462793 2170243..2170920 1 NC_011060.1 KEGG: cch:Cag_1371 hypothetical protein; hypothetical protein 2170920 6462793 Ppha_2083 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018907.1 2170243 D 324925 CDS YP_002018908.1 194337114 6462791 2171168..2171347 1 NC_011060.1 KEGG: cch:Cag_0710 hypothetical protein; hypothetical protein 2171347 6462791 Ppha_2084 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018908.1 2171168 D 324925 CDS YP_002018909.1 194337115 6462787 complement(2171777..2172139) 1 NC_011060.1 TIGRFAM: preprotein translocase, SecG subunit; KEGG: cph:Cpha266_0931 preprotein translocase subunit SecG; preprotein translocase subunit SecG 2172139 secG 6462787 secG Pelodictyon phaeoclathratiforme BU-1 preprotein translocase subunit SecG YP_002018909.1 2171777 R 324925 CDS YP_002018910.1 194337116 6462785 2172229..2172468 1 NC_011060.1 KEGG: cch:Cag_1532 hypothetical protein; hypothetical protein 2172468 6462785 Ppha_2086 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018910.1 2172229 D 324925 CDS YP_002018911.1 194337117 6462781 2172479..2173081 1 NC_011060.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 2173081 hisB 6462781 hisB Pelodictyon phaeoclathratiforme BU-1 imidazoleglycerol-phosphate dehydratase YP_002018911.1 2172479 D 324925 CDS YP_002018912.1 194337118 6462776 complement(2173192..2174766) 1 NC_011060.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 2174766 6462776 Ppha_2088 Pelodictyon phaeoclathratiforme BU-1 phosphodiesterase YP_002018912.1 2173192 R 324925 CDS YP_002018913.1 194337119 6462775 complement(2175079..2175342) 1 NC_011060.1 KEGG: cph:Cpha266_0927 hypothetical protein; hypothetical protein 2175342 6462775 Ppha_2089 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018913.1 2175079 R 324925 CDS YP_002018914.1 194337120 6462774 complement(2175347..2175655) 1 NC_011060.1 KEGG: cch:Cag_1543 hypothetical protein; hypothetical protein 2175655 6462774 Ppha_2090 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018914.1 2175347 R 324925 CDS YP_002018915.1 194337121 6462770 complement(2175670..2178081) 1 NC_011060.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2178081 pheT 6462770 pheT Pelodictyon phaeoclathratiforme BU-1 phenylalanyl-tRNA synthetase subunit beta YP_002018915.1 2175670 R 324925 CDS YP_002018916.1 194337122 6462760 complement(2178570..2179040) 1 NC_011060.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0924 NUDIX hydrolase; NUDIX hydrolase 2179040 6462760 Ppha_2092 Pelodictyon phaeoclathratiforme BU-1 NUDIX hydrolase YP_002018916.1 2178570 R 324925 CDS YP_002018917.1 194337123 6462758 2179210..2180187 1 NC_011060.1 PFAM: Nucleotidyl transferase; KEGG: plt:Plut_0673 glucose-1-phosphate thymidylyltransferase; nucleotidyl transferase 2180187 6462758 Ppha_2093 Pelodictyon phaeoclathratiforme BU-1 nucleotidyl transferase YP_002018917.1 2179210 D 324925 CDS YP_002018918.1 194337124 6462757 2180452..2181666 1 NC_011060.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2181666 6462757 Ppha_2094 Pelodictyon phaeoclathratiforme BU-1 S-adenosylmethionine synthetase YP_002018918.1 2180452 D 324925 CDS YP_002018919.1 194337125 6462756 2181700..2183115 1 NC_011060.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 2183115 6462756 Ppha_2095 Pelodictyon phaeoclathratiforme BU-1 S-adenosyl-L-homocysteine hydrolase YP_002018919.1 2181700 D 324925 CDS YP_002018920.1 194337126 6462753 2183494..2184141 1 NC_011060.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cph:Cpha266_0920 phosphoribosylanthranilate isomerase; Phosphoribosylanthranilate isomerase 2184141 6462753 Ppha_2096 Pelodictyon phaeoclathratiforme BU-1 Phosphoribosylanthranilate isomerase YP_002018920.1 2183494 D 324925 CDS YP_002018921.1 194337127 6462752 complement(2184138..2185112) 1 NC_011060.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_0919 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2185112 6462752 Ppha_2097 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002018921.1 2184138 R 324925 CDS YP_002018922.1 194337128 6462751 complement(2185242..2186996) 1 NC_011060.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: plt:Plut_0668 glutathione-regulated potassium-efflux system protein KefC; sodium/hydrogen exchanger 2186996 6462751 Ppha_2098 Pelodictyon phaeoclathratiforme BU-1 sodium/hydrogen exchanger YP_002018922.1 2185242 R 324925 CDS YP_002018923.1 194337129 6462750 2187135..2187275 1 NC_011060.1 hypothetical protein 2187275 6462750 Ppha_2099 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018923.1 2187135 D 324925 CDS YP_002018924.1 194337130 6462749 2187284..2187556 1 NC_011060.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 2187556 6462749 Ppha_2100 Pelodictyon phaeoclathratiforme BU-1 RNP-1 like RNA-binding protein YP_002018924.1 2187284 D 324925 CDS YP_002018925.1 194337131 6462748 2187598..2187930 1 NC_011060.1 KEGG: cch:Cag_1552 hypothetical protein; hypothetical protein 2187930 6462748 Ppha_2101 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018925.1 2187598 D 324925 CDS YP_002018926.1 194337132 6462747 complement(2188067..2188657) 1 NC_011060.1 TIGRFAM: yecA family protein; KEGG: cph:Cpha266_0914 YecA family protein; yecA family protein 2188657 6462747 Ppha_2102 Pelodictyon phaeoclathratiforme BU-1 yecA family protein YP_002018926.1 2188067 R 324925 CDS YP_002018927.1 194337133 6462745 2188789..2190495 1 NC_011060.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cph:Cpha266_0913 sulfate transporter; sulfate transporter 2190495 6462745 Ppha_2103 Pelodictyon phaeoclathratiforme BU-1 sulfate transporter YP_002018927.1 2188789 D 324925 CDS YP_002018928.1 194337134 6462743 complement(2190645..2190899) 1 NC_011060.1 KEGG: cch:Cag_1554 hypothetical protein; hypothetical protein 2190899 6462743 Ppha_2104 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018928.1 2190645 R 324925 CDS YP_002018929.1 194337135 6462739 2191055..2191507 1 NC_011060.1 TIGRFAM: nitrogenase-associated protein; KEGG: cph:Cpha266_0911 nitrogenase-associated protein; nitrogenase-associated protein 2191507 6462739 Ppha_2105 Pelodictyon phaeoclathratiforme BU-1 nitrogenase-associated protein YP_002018929.1 2191055 D 324925 CDS YP_002018930.1 194337136 6462738 2191511..2191819 1 NC_011060.1 KEGG: cph:Cpha266_0910 hypothetical protein; hypothetical protein 2191819 6462738 Ppha_2106 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018930.1 2191511 D 324925 CDS YP_002018931.1 194337137 6462736 2191910..2192353 1 NC_011060.1 PFAM: protein of unknown function DUF296; KEGG: cte:CT0707 hypothetical protein; hypothetical protein 2192353 6462736 Ppha_2107 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018931.1 2191910 D 324925 CDS YP_002018932.1 194337138 6462735 complement(2192424..2193680) 1 NC_011060.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1251 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2193680 6462735 Ppha_2108 Pelodictyon phaeoclathratiforme BU-1 DEAD/DEAH box helicase YP_002018932.1 2192424 R 324925 CDS YP_002018933.1 194337139 6462733 complement(2193965..2194714) 1 NC_011060.1 PFAM: protein of unknown function DUF45; KEGG: plt:Plut_0661 zinc protease; hypothetical protein 2194714 6462733 Ppha_2109 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018933.1 2193965 R 324925 CDS YP_002018934.1 194337140 6462732 complement(2194770..2195906) 1 NC_011060.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: plt:Plut_1548 cystathionine gamma-synthase; cystathionine gamma-synthase 2195906 6462732 Ppha_2110 Pelodictyon phaeoclathratiforme BU-1 cystathionine gamma-synthase YP_002018934.1 2194770 R 324925 CDS YP_002018935.1 194337141 6462730 complement(2196461..2197702) 1 NC_011060.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 2197702 6462730 Ppha_2112 Pelodictyon phaeoclathratiforme BU-1 RNA-directed DNA polymerase YP_002018935.1 2196461 R 324925 CDS YP_002018936.1 194337142 6462727 complement(2197699..2198082) 1 NC_011060.1 KEGG: eba:ebA7204 predicted transposase; hypothetical protein 2198082 6462727 Ppha_2113 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018936.1 2197699 R 324925 CDS YP_002018937.1 194337143 6462726 2199391..2200104 1 NC_011060.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT2121 methyltransferase; type 11 methyltransferase 2200104 6462726 Ppha_2114 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002018937.1 2199391 D 324925 CDS YP_002018938.1 194337144 6462725 2200194..2200400 1 NC_011060.1 PFAM: protein of unknown function UPF0150; KEGG: mar:MAE_62810 hypothetical protein; hypothetical protein 2200400 6462725 Ppha_2115 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018938.1 2200194 D 324925 CDS YP_002018939.1 194337145 6462722 2200401..2200688 1 NC_011060.1 KEGG: mar:MAE_62820 hypothetical protein; hypothetical protein 2200688 6462722 Ppha_2116 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018939.1 2200401 D 324925 CDS YP_002018940.1 194337146 6462721 complement(2200625..2201290) 1 NC_011060.1 PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: jan:Jann_3724 methyltransferase type 11; type 11 methyltransferase 2201290 6462721 Ppha_2117 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002018940.1 2200625 R 324925 CDS YP_002018941.1 194337147 6462720 complement(2201344..2201634) 1 NC_011060.1 hypothetical protein 2201634 6462720 Ppha_2118 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018941.1 2201344 R 324925 CDS YP_002018942.1 194337148 6462719 2201937..2202410 1 NC_011060.1 KEGG: cch:Cag_1343 hypothetical protein; hypothetical protein 2202410 6462719 Ppha_2119 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018942.1 2201937 D 324925 CDS YP_002018943.1 194337149 6462716 2202400..2202633 1 NC_011060.1 hypothetical protein 2202633 6462716 Ppha_2120 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018943.1 2202400 D 324925 CDS YP_002018944.1 194337150 6462713 2202768..2203220 1 NC_011060.1 KEGG: gur:Gura_1011 protein of unknown function DUF1016; hypothetical protein 2203220 6462713 Ppha_2121 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018944.1 2202768 D 324925 CDS YP_002018945.1 194337151 6462708 complement(2203225..2203716) 1 NC_011060.1 KEGG: bxe:Bxe_A0223 HsdS protein; hypothetical protein 2203716 6462708 Ppha_2122 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018945.1 2203225 R 324925 CDS YP_002018946.1 194337152 6462707 complement(2203713..2204186) 1 NC_011060.1 KEGG: gur:Gura_4113 transcriptional regulator; transcriptional regulator 2204186 6462707 Ppha_2123 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002018946.1 2203713 R 324925 CDS YP_002018947.1 194337153 6462705 2205215..2205568 1 NC_011060.1 PFAM: protein of unknown function DUF891; KEGG: cph:Cpha266_0649 protein of unknown function DUF891; hypothetical protein 2205568 6462705 Ppha_2124 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018947.1 2205215 D 324925 CDS YP_002018948.1 194337154 6462702 2205561..2205836 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0381 transcriptional regulator, XRE family; XRE family transcriptional regulator 2205836 6462702 Ppha_2125 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002018948.1 2205561 D 324925 CDS YP_002018949.1 194337155 6462696 2206349..2209084 1 NC_011060.1 KEGG: mca:MCA2686 hypothetical protein; hypothetical protein 2209084 6462696 Ppha_2127 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018949.1 2206349 D 324925 CDS YP_002018950.1 194337156 6462690 2209084..2210076 1 NC_011060.1 KEGG: mca:MCA2685 hypothetical protein; hypothetical protein 2210076 6462690 Ppha_2128 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018950.1 2209084 D 324925 CDS YP_002018951.1 194337157 6462681 2210087..2210836 1 NC_011060.1 KEGG: ent:Ent638_1352 hypothetical protein; hypothetical protein 2210836 6462681 Ppha_2129 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018951.1 2210087 D 324925 CDS YP_002018952.1 194337158 6462669 2210838..2211125 1 NC_011060.1 hypothetical protein 2211125 6462669 Ppha_2130 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018952.1 2210838 D 324925 CDS YP_002018953.1 194337159 6462663 2211115..2211462 1 NC_011060.1 KEGG: mar:MAE_02430 hypothetical protein; transcriptional modulator of MazE/toxin MazF 2211462 6462663 Ppha_2131 Pelodictyon phaeoclathratiforme BU-1 transcriptional modulator of MazE/toxin MazF YP_002018953.1 2211115 D 324925 CDS YP_002018954.1 194337160 6462653 2211462..2214818 1 NC_011060.1 KEGG: vei:Veis_0099 hypothetical protein; hypothetical protein 2214818 6462653 Ppha_2132 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018954.1 2211462 D 324925 CDS YP_002018955.1 194337161 6462641 2214815..2215315 1 NC_011060.1 KEGG: vei:Veis_0100 hypothetical protein; hypothetical protein 2215315 6462641 Ppha_2133 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018955.1 2214815 D 324925 CDS YP_002018956.1 194337162 6462639 2215325..2218108 1 NC_011060.1 PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: mca:MCA2682 prophage LambdaMc01, helicase, SNF2 family; helicase domain-containing protein 2218108 6462639 Ppha_2134 Pelodictyon phaeoclathratiforme BU-1 helicase domain-containing protein YP_002018956.1 2215325 D 324925 CDS YP_002018957.1 194337163 6462621 2218252..2219493 1 NC_011060.1 PFAM: RES domain protein; KEGG: neu:NE0745 hypothetical protein; RES domain-containing protein 2219493 6462621 Ppha_2135 Pelodictyon phaeoclathratiforme BU-1 RES domain-containing protein YP_002018957.1 2218252 D 324925 CDS YP_002018958.1 194337164 6462615 2220309..2220449 1 NC_011060.1 hypothetical protein 2220449 6462615 Ppha_2136 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018958.1 2220309 D 324925 CDS YP_002018959.1 194337165 6462611 2220506..2221099 1 NC_011060.1 KEGG: bcm:Bcenmc03_5097 hypothetical protein; hypothetical protein 2221099 6462611 Ppha_2137 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018959.1 2220506 D 324925 CDS YP_002018960.1 194337166 6462600 complement(2221133..2221432) 1 NC_011060.1 KEGG: cph:Cpha266_1621 hypothetical protein; hypothetical protein 2221432 6462600 Ppha_2138 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018960.1 2221133 R 324925 CDS YP_002018961.1 194337167 6462587 2222260..2222469 1 NC_011060.1 KEGG: cph:Cpha266_2116 hypothetical protein; hypothetical protein 2222469 6462587 Ppha_2141 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018961.1 2222260 D 324925 CDS YP_002018962.1 194337168 6462570 complement(2223180..2223743) 1 NC_011060.1 PFAM: protein of unknown function DUF179; KEGG: cph:Cpha266_0885 protein of unknown function DUF179; hypothetical protein 2223743 6462570 Ppha_2142 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018962.1 2223180 R 324925 CDS YP_002018963.1 194337169 6462552 complement(2223753..2224223) 1 NC_011060.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_1602 bacterioferritin comigratory protein, thiol peroxidase; alkyl hydroperoxide reductase 2224223 6462552 Ppha_2143 Pelodictyon phaeoclathratiforme BU-1 alkyl hydroperoxide reductase YP_002018963.1 2223753 R 324925 CDS YP_002018964.1 194337170 6462532 2224308..2224823 1 NC_011060.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0883 NUDIX hydrolase; NUDIX hydrolase 2224823 6462532 Ppha_2144 Pelodictyon phaeoclathratiforme BU-1 NUDIX hydrolase YP_002018964.1 2224308 D 324925 CDS YP_002018965.1 194337171 6462530 complement(2224825..2228199) 1 NC_011060.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 2228199 6462530 Ppha_2145 Pelodictyon phaeoclathratiforme BU-1 multi-sensor hybrid histidine kinase YP_002018965.1 2224825 R 324925 CDS YP_002018966.1 194337172 6462520 complement(2228231..2229214) 1 NC_011060.1 KEGG: cph:Cpha266_0879 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2229214 6462520 Ppha_2146 Pelodictyon phaeoclathratiforme BU-1 oligopeptide/dipeptide ABC transporter ATPase YP_002018966.1 2228231 R 324925 CDS YP_002018967.1 194337173 6462511 2229298..2232609 1 NC_011060.1 KEGG: cch:Cag_1882 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 2232609 6462511 Ppha_2147 Pelodictyon phaeoclathratiforme BU-1 transcription-repair coupling factor YP_002018967.1 2229298 D 324925 CDS YP_002018968.1 194337174 6462508 2232725..2233342 1 NC_011060.1 PFAM: ferredoxin; KEGG: cph:Cpha266_0877 ferredoxin; ferredoxin 2233342 6462508 Ppha_2148 Pelodictyon phaeoclathratiforme BU-1 ferredoxin YP_002018968.1 2232725 D 324925 CDS YP_002018969.1 194337175 6462504 2233505..2234185 1 NC_011060.1 PFAM: ferredoxin; KEGG: pvi:Cvib_1151 ferredoxin; ferredoxin 2234185 6462504 Ppha_2149 Pelodictyon phaeoclathratiforme BU-1 ferredoxin YP_002018969.1 2233505 D 324925 CDS YP_002018970.1 194337176 6462486 2234237..2235457 1 NC_011060.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: cph:Cpha266_0875 L-alanine dehydrogenase; Alanine dehydrogenase 2235457 6462486 Ppha_2150 Pelodictyon phaeoclathratiforme BU-1 Alanine dehydrogenase YP_002018970.1 2234237 D 324925 CDS YP_002018971.1 194337177 6462479 complement(2235467..2236993) 1 NC_011060.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_1888 carotenoid isomerase; amine oxidase 2236993 6462479 Ppha_2151 Pelodictyon phaeoclathratiforme BU-1 amine oxidase YP_002018971.1 2235467 R 324925 CDS YP_002018972.1 194337178 6462457 2237129..2237758 1 NC_011060.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2237758 6462457 Ppha_2152 Pelodictyon phaeoclathratiforme BU-1 RNA polymerase sigma factor RpoE YP_002018972.1 2237129 D 324925 CDS YP_002018973.1 194337179 6462451 2237786..2238043 1 NC_011060.1 KEGG: plt:Plut_0624 hypothetical protein; hypothetical protein 2238043 6462451 Ppha_2153 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018973.1 2237786 D 324925 CDS YP_002018974.1 194337180 6462450 2238196..2238585 1 NC_011060.1 PFAM: regulatory protein ArsR; KEGG: plt:Plut_0623 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2238585 6462450 Ppha_2154 Pelodictyon phaeoclathratiforme BU-1 ArsR family transcriptional regulator YP_002018974.1 2238196 D 324925 CDS YP_002018975.1 194337181 6462449 2238833..2239231 1 NC_011060.1 PFAM: heat shock protein Hsp20; KEGG: cch:Cag_1892 heat shock protein, HSP20 family; heat shock protein Hsp20 2239231 6462449 Ppha_2155 Pelodictyon phaeoclathratiforme BU-1 heat shock protein Hsp20 YP_002018975.1 2238833 D 324925 CDS YP_002018976.1 194337182 6462436 2239316..2241238 1 NC_011060.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2241238 dnaK 6462436 dnaK Pelodictyon phaeoclathratiforme BU-1 molecular chaperone DnaK YP_002018976.1 2239316 D 324925 CDS YP_002018977.1 194337183 6462434 2241379..2241813 1 NC_011060.1 KEGG: cph:Cpha266_0863 photosystem P840 reaction center protein PscD; photosystem P840 reaction center protein PscD 2241813 6462434 Ppha_2157 Pelodictyon phaeoclathratiforme BU-1 photosystem P840 reaction center protein PscD YP_002018977.1 2241379 D 324925 CDS YP_002018978.1 194337184 6462348 complement(2242074..2242862) 1 NC_011060.1 TIGRFAM: tol-pal system protein YbgF; KEGG: cph:Cpha266_0862 membrane lipoprotein lipid attachment site; tol-pal system protein YbgF 2242862 6462348 Ppha_2158 Pelodictyon phaeoclathratiforme BU-1 tol-pal system protein YbgF YP_002018978.1 2242074 R 324925 CDS YP_002018979.1 194337185 6462310 complement(2242867..2243388) 1 NC_011060.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0616 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein 2243388 6462310 Ppha_2159 Pelodictyon phaeoclathratiforme BU-1 peptidoglycan-associated lipoprotein YP_002018979.1 2242867 R 324925 CDS YP_002018980.1 194337186 6462207 complement(2243473..2243946) 1 NC_011060.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; peptidoglycan-associated lipoprotein 2243946 6462207 Ppha_2160 Pelodictyon phaeoclathratiforme BU-1 peptidoglycan-associated lipoprotein YP_002018980.1 2243473 R 324925 CDS YP_002018981.1 194337187 6462196 complement(2243989..2245311) 1 NC_011060.1 PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller; WD40 domain-containing protein beta Propeller 2245311 6462196 Ppha_2161 Pelodictyon phaeoclathratiforme BU-1 WD40 domain-containing protein beta Propeller YP_002018981.1 2243989 R 324925 CDS YP_002018982.1 194337188 6462180 complement(2245486..2246382) 1 NC_011060.1 KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family; Fis family transcriptional regulator 2246382 6462180 Ppha_2162 Pelodictyon phaeoclathratiforme BU-1 Fis family transcriptional regulator YP_002018982.1 2245486 R 324925 CDS YP_002018983.1 194337189 6462168 complement(2246391..2246786) 1 NC_011060.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein; biopolymer transport protein ExbD/TolR 2246786 6462168 Ppha_2163 Pelodictyon phaeoclathratiforme BU-1 biopolymer transport protein ExbD/TolR YP_002018983.1 2246391 R 324925 CDS YP_002018984.1 194337190 6462131 complement(2246816..2247475) 1 NC_011060.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cph:Cpha266_0856 MotA/TolQ/ExbB proton channel; protein TolQ 2247475 6462131 Ppha_2164 Pelodictyon phaeoclathratiforme BU-1 protein TolQ YP_002018984.1 2246816 R 324925 CDS YP_002018985.1 194337191 6462123 complement(2247500..2249080) 1 NC_011060.1 PFAM: phosphatidate cytidylyltransferase; protein of unknown function DUF92 transmembrane; KEGG: cph:Cpha266_0855 protein of unknown function DUF92, transmembrane; hypothetical protein 2249080 6462123 Ppha_2165 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018985.1 2247500 R 324925 CDS YP_002018986.1 194337192 6462099 complement(2249151..2249375) 1 NC_011060.1 hypothetical protein 2249375 6462099 Ppha_2166 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018986.1 2249151 R 324925 CDS YP_002018987.1 194337193 6462080 2249533..2251230 1 NC_011060.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2251230 6462080 Ppha_2167 Pelodictyon phaeoclathratiforme BU-1 dihydroxy-acid dehydratase YP_002018987.1 2249533 D 324925 CDS YP_002018988.1 194337194 6462024 2251238..2252959 1 NC_011060.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cph:Cpha266_0853 acetolactate synthase, large subunit; acetolactate synthase large subunit 2252959 6462024 Ppha_2168 Pelodictyon phaeoclathratiforme BU-1 acetolactate synthase large subunit YP_002018988.1 2251238 D 324925 CDS YP_002018989.1 194337195 6462021 2253199..2256645 1 NC_011060.1 KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2256645 6462021 Ppha_2169 Pelodictyon phaeoclathratiforme BU-1 PAS/PAC sensor hybrid histidine kinase YP_002018989.1 2253199 D 324925 CDS YP_002018990.1 194337196 6462017 2256690..2256812 1 NC_011060.1 hypothetical protein 2256812 6462017 Ppha_2170 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018990.1 2256690 D 324925 CDS YP_002018991.1 194337197 6462008 2256875..2257351 1 NC_011060.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2257351 ilvH 6462008 ilvH Pelodictyon phaeoclathratiforme BU-1 acetolactate synthase 3 regulatory subunit YP_002018991.1 2256875 D 324925 CDS YP_002018992.1 194337198 6462006 2257394..2258386 1 NC_011060.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2258386 6462006 Ppha_2172 Pelodictyon phaeoclathratiforme BU-1 ketol-acid reductoisomerase YP_002018992.1 2257394 D 324925 CDS YP_002018993.1 194337199 6461934 2258403..2259461 1 NC_011060.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2259461 6461934 Ppha_2173 Pelodictyon phaeoclathratiforme BU-1 3-isopropylmalate dehydrogenase YP_002018993.1 2258403 D 324925 CDS YP_002018994.1 194337200 6461856 2259483..2261054 1 NC_011060.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2261054 6461856 Ppha_2174 Pelodictyon phaeoclathratiforme BU-1 2-isopropylmalate synthase YP_002018994.1 2259483 D 324925 CDS YP_002018995.1 194337201 6461843 2261062..2262357 1 NC_011060.1 KEGG: cch:Cag_1900 3-isopropylmalate dehydratase; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; homoaconitate hydratase family protein 2262357 6461843 Ppha_2175 Pelodictyon phaeoclathratiforme BU-1 homoaconitate hydratase family protein YP_002018995.1 2261062 D 324925 CDS YP_002018996.1 194337202 6461800 2262392..2262958 1 NC_011060.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: cph:Cpha266_0847 3-isopropylmalate dehydratase, small subunit; 3-isopropylmalate dehydratase small subunit 2262958 6461800 Ppha_2176 Pelodictyon phaeoclathratiforme BU-1 3-isopropylmalate dehydratase small subunit YP_002018996.1 2262392 D 324925 CDS YP_002018997.1 194337203 6461665 2262962..2264572 1 NC_011060.1 TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cch:Cag_1898 alpha-isopropylmalate/homocitrate synthase family transferase; alpha-isopropylmalate/homocitrate synthase family transferase 2264572 6461665 Ppha_2177 Pelodictyon phaeoclathratiforme BU-1 alpha-isopropylmalate/homocitrate synthase family transferase YP_002018997.1 2262962 D 324925 CDS YP_002018998.1 194337204 6461659 complement(2264670..2264924) 1 NC_011060.1 KEGG: cch:Cag_1724 hypothetical protein; hypothetical protein 2264924 6461659 Ppha_2178 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018998.1 2264670 R 324925 CDS YP_002018999.1 194337205 6461622 complement(2266290..2266448) 1 NC_011060.1 hypothetical protein 2266448 6461622 Ppha_2181 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002018999.1 2266290 R 324925 CDS YP_002019000.1 194337206 6461600 complement(2266472..2266600) 1 NC_011060.1 KEGG: tbd:Tbd_2422 hypothetical protein; hypothetical protein 2266600 6461600 Ppha_2182 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019000.1 2266472 R 324925 CDS YP_002019001.1 194337207 6461584 complement(2266643..2266858) 1 NC_011060.1 KEGG: tbd:Tbd_2422 hypothetical protein; hypothetical protein 2266858 6461584 Ppha_2183 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019001.1 2266643 R 324925 CDS YP_002019002.1 194337208 6461567 complement(2266855..2267112) 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; KEGG: tbd:Tbd_2423 prevent-host-death protein; prevent-host-death family protein 2267112 6461567 Ppha_2184 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002019002.1 2266855 R 324925 CDS YP_002019003.1 194337209 6461554 complement(2267473..2267997) 1 NC_011060.1 PFAM: Lipocalin family protein; KEGG: cph:Cpha266_0694 lipocalin family protein; lipocalin family protein 2267997 6461554 Ppha_2185 Pelodictyon phaeoclathratiforme BU-1 lipocalin family protein YP_002019003.1 2267473 R 324925 CDS YP_002019004.1 194337210 6461553 complement(2268073..2271096) 1 NC_011060.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; hypothetical protein 2271096 6461553 Ppha_2186 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019004.1 2268073 R 324925 CDS YP_002019005.1 194337211 6461466 complement(2272649..2272876) 1 NC_011060.1 KEGG: dol:Dole_1759 prevent-host-death family protein; prevent-host-death family protein 2272876 6461466 Ppha_2188 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002019005.1 2272649 R 324925 CDS YP_002019006.1 194337212 6461427 complement(2273019..2274050) 1 NC_011060.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: cph:Cpha266_0459 hypothetical protein; RNA-directed DNA polymerase 2274050 6461427 Ppha_2189 Pelodictyon phaeoclathratiforme BU-1 RNA-directed DNA polymerase YP_002019006.1 2273019 R 324925 CDS YP_002019007.1 194337213 6461413 complement(2274446..2274766) 1 NC_011060.1 KEGG: cph:Cpha266_0458 hypothetical protein; hypothetical protein 2274766 6461413 Ppha_2191 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019007.1 2274446 R 324925 CDS YP_002019008.1 194337214 6461398 complement(2274827..2277976) 1 NC_011060.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; hypothetical protein 2277976 6461398 Ppha_2192 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019008.1 2274827 R 324925 CDS YP_002019009.1 194337215 6461392 complement(2277973..2278269) 1 NC_011060.1 PFAM: plasmid stabilization system; KEGG: cch:Cag_0909 hypothetical protein; plasmid stabilization system 2278269 6461392 Ppha_2193 Pelodictyon phaeoclathratiforme BU-1 plasmid stabilization system YP_002019009.1 2277973 R 324925 CDS YP_002019010.1 194337216 6461382 complement(2278266..2278556) 1 NC_011060.1 TIGRFAM: prevent-host-death family protein; KEGG: cch:Cag_0908 prevent-host-death protein; prevent-host-death family protein 2278556 6461382 Ppha_2194 Pelodictyon phaeoclathratiforme BU-1 prevent-host-death family protein YP_002019010.1 2278266 R 324925 CDS YP_002019011.1 194337217 6461334 complement(2279118..2279996) 1 NC_011060.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cph:Cpha266_1518 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 2279996 6461334 Ppha_2196 Pelodictyon phaeoclathratiforme BU-1 DNA methylase N-4/N-6 domain-containing protein YP_002019011.1 2279118 R 324925 CDS YP_002019012.1 194337218 6461333 2280246..2280428 1 NC_011060.1 KEGG: cph:Cpha266_0908 hypothetical protein; hypothetical protein 2280428 6461333 Ppha_2197 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019012.1 2280246 D 324925 CDS YP_002019013.1 194337219 6461319 complement(2280431..2281351) 1 NC_011060.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cph:Cpha266_0693 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 2281351 6461319 Ppha_2198 Pelodictyon phaeoclathratiforme BU-1 cation diffusion facilitator family transporter YP_002019013.1 2280431 R 324925 CDS YP_002019014.1 194337220 6461281 complement(2281397..2282263) 1 NC_011060.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 2282263 purU 6461281 purU Pelodictyon phaeoclathratiforme BU-1 formyltetrahydrofolate deformylase YP_002019014.1 2281397 R 324925 CDS YP_002019015.1 194337221 6461272 2282375..2282632 1 NC_011060.1 KEGG: plt:Plut_1792 hypothetical protein; hypothetical protein 2282632 6461272 Ppha_2200 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019015.1 2282375 D 324925 CDS YP_002019016.1 194337222 6461246 2282632..2283258 1 NC_011060.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_0514 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 2283258 6461246 Ppha_2201 Pelodictyon phaeoclathratiforme BU-1 PA-phosphatase-like phosphoesterase YP_002019016.1 2282632 D 324925 CDS YP_002019017.1 194337223 6461224 2283233..2284780 1 NC_011060.1 PFAM: glycosyl transferase family 39; KEGG: cph:Cpha266_0690 glycosyl transferase, family 39; glycosyl transferase family protein 2284780 6461224 Ppha_2202 Pelodictyon phaeoclathratiforme BU-1 glycosyl transferase family protein YP_002019017.1 2283233 D 324925 CDS YP_002019018.1 194337224 6461218 2284777..2285724 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0689 glycosyl transferase, family 2; family 2 glycosyl transferase 2285724 6461218 Ppha_2203 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002019018.1 2284777 D 324925 CDS YP_002019019.1 194337225 6461190 2285711..2286604 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0688 hypothetical protein; hypothetical protein 2286604 6461190 Ppha_2204 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019019.1 2285711 D 324925 CDS YP_002019020.1 194337226 6461081 2286738..2287376 1 NC_011060.1 KEGG: pvi:Cvib_1533 porin, opacity type; porin, opacity type 2287376 6461081 Ppha_2205 Pelodictyon phaeoclathratiforme BU-1 porin, opacity type YP_002019020.1 2286738 D 324925 CDS YP_002019021.1 194337227 6461080 complement(2287446..2289167) 1 NC_011060.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cph:Cpha266_0687 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 2289167 6461080 Ppha_2206 Pelodictyon phaeoclathratiforme BU-1 single-stranded-DNA-specific exonuclease RecJ YP_002019021.1 2287446 R 324925 CDS YP_002019022.1 194337228 6461068 2289361..2290362 1 NC_011060.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2290362 6461068 Ppha_2207 Pelodictyon phaeoclathratiforme BU-1 fructose-1,6-bisphosphatase YP_002019022.1 2289361 D 324925 CDS YP_002019023.1 194337229 6461033 complement(2290454..2291287) 1 NC_011060.1 PFAM: metallophosphoesterase; KEGG: cch:Cag_1605 hypothetical protein; metallophosphoesterase 2291287 6461033 Ppha_2208 Pelodictyon phaeoclathratiforme BU-1 metallophosphoesterase YP_002019023.1 2290454 R 324925 CDS YP_002019024.1 194337230 6461032 complement(2291393..2292634) 1 NC_011060.1 PFAM: AAA-4 family protein; KEGG: cch:Cag_0166 transcriptional regulator; transcriptional regulator 2292634 6461032 Ppha_2209 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002019024.1 2291393 R 324925 CDS YP_002019025.1 194337231 6460972 2292986..2293612 1 NC_011060.1 KEGG: cph:Cpha266_0681 hypothetical protein; hypothetical protein 2293612 6460972 Ppha_2211 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019025.1 2292986 D 324925 CDS YP_002019026.1 194337232 6460969 2293866..2294540 1 NC_011060.1 hypothetical protein 2294540 6460969 Ppha_2212 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019026.1 2293866 D 324925 CDS YP_002019027.1 194337233 6460967 complement(2294648..2296873) 1 NC_011060.1 KEGG: cph:Cpha266_0680 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase 2296873 6460967 Ppha_2213 Pelodictyon phaeoclathratiforme BU-1 isocitrate dehydrogenase YP_002019027.1 2294648 R 324925 CDS YP_002019028.1 194337234 6460960 complement(2297262..2298128) 1 NC_011060.1 KEGG: cph:Cpha266_0679 enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl-(acyl carrier protein) reductase 2298128 6460960 Ppha_2214 Pelodictyon phaeoclathratiforme BU-1 enoyl-(acyl carrier protein) reductase YP_002019028.1 2297262 R 324925 CDS YP_002019029.1 194337235 6460954 complement(2298268..2299569) 1 NC_011060.1 KEGG: plt:Plut_0457 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2299569 6460954 Ppha_2215 Pelodictyon phaeoclathratiforme BU-1 arsenite-activated ATPase ArsA YP_002019029.1 2298268 R 324925 CDS YP_002019030.1 194337236 6460927 complement(2299664..2300248) 1 NC_011060.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2300248 aat 6460927 aat Pelodictyon phaeoclathratiforme BU-1 leucyl/phenylalanyl-tRNA--protein transferase YP_002019030.1 2299664 R 324925 CDS YP_002019031.1 194337237 6460919 complement(2300275..2300853) 1 NC_011060.1 PFAM: nitroreductase; KEGG: plt:Plut_0455 nitroreductase family protein; nitroreductase 2300853 6460919 Ppha_2217 Pelodictyon phaeoclathratiforme BU-1 nitroreductase YP_002019031.1 2300275 R 324925 CDS YP_002019032.1 194337238 6460906 complement(2300865..2301908) 1 NC_011060.1 KEGG: cph:Cpha266_0675 hypothetical protein; hypothetical protein 2301908 6460906 Ppha_2218 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019032.1 2300865 R 324925 CDS YP_002019033.1 194337239 6460893 complement(2301941..2304160) 1 NC_011060.1 PFAM: UvrD/REP helicase; KEGG: cch:Cag_1415 DNA helicase II; UvrD/REP helicase 2304160 6460893 Ppha_2219 Pelodictyon phaeoclathratiforme BU-1 UvrD/REP helicase YP_002019033.1 2301941 R 324925 CDS YP_002019034.1 194337240 6460891 2304383..2305825 1 NC_011060.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: plt:Plut_0452 alpha amylase, catalytic subdomain; alpha amylase catalytic protein 2305825 6460891 Ppha_2220 Pelodictyon phaeoclathratiforme BU-1 alpha amylase catalytic protein YP_002019034.1 2304383 D 324925 CDS YP_002019035.1 194337241 6460863 2305904..2306329 1 NC_011060.1 PFAM: protein of unknown function UPF0047; KEGG: cch:Cag_1417 hypothetical protein; hypothetical protein 2306329 6460863 Ppha_2221 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019035.1 2305904 D 324925 CDS YP_002019036.1 194337242 6460857 2306378..2308357 1 NC_011060.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2308357 6460857 Ppha_2222 Pelodictyon phaeoclathratiforme BU-1 1-deoxy-D-xylulose-5-phosphate synthase YP_002019036.1 2306378 D 324925 CDS YP_002019037.1 194337243 6460853 complement(2308336..2308812) 1 NC_011060.1 PFAM: phosphatidylglycerophosphatase A; KEGG: cph:Cpha266_0670 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A 2308812 6460853 Ppha_2223 Pelodictyon phaeoclathratiforme BU-1 phosphatidylglycerophosphatase A YP_002019037.1 2308336 R 324925 CDS YP_002019038.1 194337244 6461905 complement(2308820..2309437) 1 NC_011060.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cch:Cag_1419 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 2309437 6461905 Ppha_2224 Pelodictyon phaeoclathratiforme BU-1 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_002019038.1 2308820 R 324925 CDS YP_002019039.1 194337245 6462037 complement(2309576..2311957) 1 NC_011060.1 PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cph:Cpha266_0668 Smr protein/MutS2; Smr protein/MutS2 2311957 6462037 Ppha_2225 Pelodictyon phaeoclathratiforme BU-1 Smr protein/MutS2 YP_002019039.1 2309576 R 324925 CDS YP_002019040.1 194337246 6462339 2312294..2312692 1 NC_011060.1 KEGG: neu:NE0822 hypothetical protein; hypothetical protein 2312692 6462339 Ppha_2226 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019040.1 2312294 D 324925 CDS YP_002019041.1 194337247 6462122 2312706..2313419 1 NC_011060.1 PFAM: RES domain protein; KEGG: neu:NE0821 hypothetical protein; RES domain-containing protein 2313419 6462122 Ppha_2227 Pelodictyon phaeoclathratiforme BU-1 RES domain-containing protein YP_002019041.1 2312706 D 324925 CDS YP_002019042.1 194337248 6461104 2313471..2313800 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_2159 hypothetical protein; XRE family transcriptional regulator 2313800 6461104 Ppha_2228 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002019042.1 2313471 D 324925 CDS YP_002019043.1 194337249 6461795 2313805..2315094 1 NC_011060.1 PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein; HipA domain-containing protein 2315094 6461795 Ppha_2229 Pelodictyon phaeoclathratiforme BU-1 HipA domain-containing protein YP_002019043.1 2313805 D 324925 CDS YP_002019044.1 194337250 6462222 complement(2315353..2315490) 1 NC_011060.1 hypothetical protein 2315490 6462222 Ppha_2230 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019044.1 2315353 R 324925 CDS YP_002019045.1 194337251 6461254 2315545..2317266 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein 2317266 6461254 Ppha_2231 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002019045.1 2315545 D 324925 CDS YP_002019046.1 194337252 6461132 complement(2317309..2317806) 1 NC_011060.1 KEGG: nma:NMA0936 hypothetical protein; hypothetical protein 2317806 6461132 Ppha_2232 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019046.1 2317309 R 324925 CDS YP_002019047.1 194337253 6461989 complement(2317803..2318822) 1 NC_011060.1 KEGG: nmn:NMCC_0685 hypothetical protein; hypothetical protein 2318822 6461989 Ppha_2233 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019047.1 2317803 R 324925 CDS YP_002019048.1 194337254 6462493 2318967..2319170 1 NC_011060.1 hypothetical protein 2319170 6462493 Ppha_2234 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019048.1 2318967 D 324925 CDS YP_002019049.1 194337255 6461477 2320226..2320447 1 NC_011060.1 PFAM: protein of unknown function UPF0150; KEGG: mhu:Mhun_2716 protein of unknown function UPF0150; hypothetical protein 2320447 6461477 Ppha_2236 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019049.1 2320226 D 324925 CDS YP_002019050.1 194337256 6461060 complement(2320578..2321951) 1 NC_011060.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sas:pSAS13 hypothetical protein; type 12 methyltransferase 2321951 6461060 Ppha_2237 Pelodictyon phaeoclathratiforme BU-1 type 12 methyltransferase YP_002019050.1 2320578 R 324925 CDS YP_002019051.1 194337257 6461628 complement(2322147..2322947) 1 NC_011060.1 KEGG: pfa:PFI1280c protein kinase; hypothetical protein 2322947 6461628 Ppha_2238 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019051.1 2322147 R 324925 CDS YP_002019052.1 194337258 6462580 complement(2325694..2327409) 1 NC_011060.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: gur:Gura_4390 site-specific DNA-methyltransferase (adenine-specific); DNA methylase N-4/N-6 domain-containing protein 2327409 6462580 Ppha_2240 Pelodictyon phaeoclathratiforme BU-1 DNA methylase N-4/N-6 domain-containing protein YP_002019052.1 2325694 R 324925 CDS YP_002019053.1 194337259 6461749 complement(2327643..2328968) 1 NC_011060.1 KEGG: mem:Memar_0416 transcriptional regulator; transcriptional regulator 2328968 6461749 Ppha_2241 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002019053.1 2327643 R 324925 CDS YP_002019054.1 194337260 6461648 2329312..2329635 1 NC_011060.1 PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related; hypothetical protein 2329635 6461648 Ppha_2242 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019054.1 2329312 D 324925 CDS YP_002019055.1 194337261 6462130 2329632..2329970 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_0827 transcriptional regulator, XRE family; XRE family transcriptional regulator 2329970 6462130 Ppha_2243 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002019055.1 2329632 D 324925 CDS YP_002019056.1 194337262 6462363 complement(2330032..2330280) 1 NC_011060.1 KEGG: cph:Cpha266_0634 transcriptional regulator; transcriptional regulator 2330280 6462363 Ppha_2244 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002019056.1 2330032 R 324925 CDS YP_002019057.1 194337263 6461757 complement(2330471..2330623) 1 NC_011060.1 KEGG: cch:Cag_0692 hypothetical protein; hypothetical protein 2330623 6461757 Ppha_2245 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019057.1 2330471 R 324925 CDS YP_002019058.1 194337264 6462395 2330702..2331082 1 NC_011060.1 KEGG: gur:Gura_0590 hypothetical protein; hypothetical protein 2331082 6462395 Ppha_2246 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019058.1 2330702 D 324925 CDS YP_002019059.1 194337265 6461453 2331042..2331776 1 NC_011060.1 PFAM: RES domain protein; KEGG: gur:Gura_0589 hypothetical protein; RES domain-containing protein 2331776 6461453 Ppha_2247 Pelodictyon phaeoclathratiforme BU-1 RES domain-containing protein YP_002019059.1 2331042 D 324925 CDS YP_002019060.1 194337266 6460867 2331923..2332633 1 NC_011060.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2332633 6460867 Ppha_2248 Pelodictyon phaeoclathratiforme BU-1 pyridoxine 5'-phosphate synthase YP_002019060.1 2331923 D 324925 CDS YP_002019061.1 194337267 6461187 2332642..2333346 1 NC_011060.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 2333346 6461187 Ppha_2249 Pelodictyon phaeoclathratiforme BU-1 deoxyribonucleotide triphosphate pyrophosphatase YP_002019061.1 2332642 D 324925 CDS YP_002019062.1 194337268 6462056 2333343..2334191 1 NC_011060.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 2334191 6462056 Ppha_2250 Pelodictyon phaeoclathratiforme BU-1 undecaprenyl pyrophosphate phosphatase YP_002019062.1 2333343 D 324925 CDS YP_002019063.1 194337269 6462422 2334301..2335161 1 NC_011060.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cch:Cag_0481 phosphoesterase PHP-like; PHP domain-containing protein 2335161 6462422 Ppha_2251 Pelodictyon phaeoclathratiforme BU-1 PHP domain-containing protein YP_002019063.1 2334301 D 324925 CDS YP_002019064.1 194337270 6461657 2335206..2336000 1 NC_011060.1 PFAM: protein of unknown function DUF140; KEGG: pvi:Cvib_0490 protein of unknown function DUF140; hypothetical protein 2336000 6461657 Ppha_2252 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019064.1 2335206 D 324925 CDS YP_002019065.1 194337271 6462584 2336005..2336739 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0441 ATPase; ABC transporter-like protein 2336739 6462584 Ppha_2253 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002019065.1 2336005 D 324925 CDS YP_002019066.1 194337272 6462036 2336763..2337641 1 NC_011060.1 PFAM: Mammalian cell entry related domain protein; KEGG: cch:Cag_0478 VpsC protein; mammalian cell entry domain-containing protein 2337641 6462036 Ppha_2254 Pelodictyon phaeoclathratiforme BU-1 mammalian cell entry domain-containing protein YP_002019066.1 2336763 D 324925 CDS YP_002019067.1 194337273 6462320 2337657..2338796 1 NC_011060.1 PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease; beta-lactamase 2338796 6462320 Ppha_2255 Pelodictyon phaeoclathratiforme BU-1 beta-lactamase YP_002019067.1 2337657 D 324925 CDS YP_002019068.1 194337274 6461229 complement(2338801..2340732) 1 NC_011060.1 PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cph:Cpha266_0659 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein 2340732 6461229 Ppha_2256 Pelodictyon phaeoclathratiforme BU-1 Rieske (2Fe-2S) domain-containing protein YP_002019068.1 2338801 R 324925 CDS YP_002019069.1 194337275 6462465 2340838..2341812 1 NC_011060.1 PFAM: domain of unknown function DUF1730; KEGG: cch:Cag_0255 iron-sulfur cluster-binding protein; hypothetical protein 2341812 6462465 Ppha_2257 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019069.1 2340838 D 324925 CDS YP_002019070.1 194337276 6460957 complement(2342015..2343097) 1 NC_011060.1 KEGG: dde:Dde_3749 ATPase domain protein; ATPase domain-containing protein 2343097 6460957 Ppha_2258 Pelodictyon phaeoclathratiforme BU-1 ATPase domain-containing protein YP_002019070.1 2342015 R 324925 CDS YP_002019071.1 194337277 6462198 complement(2343121..2344698) 1 NC_011060.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2344698 purH 6462198 purH Pelodictyon phaeoclathratiforme BU-1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_002019071.1 2343121 R 324925 CDS YP_002019072.1 194337278 6462472 complement(2345036..2345644) 1 NC_011060.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: gka:GKP41 hypothetical protein; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 2345644 6462472 Ppha_2260 Pelodictyon phaeoclathratiforme BU-1 peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_002019072.1 2345036 R 324925 CDS YP_002019073.1 194337279 6461309 complement(2345782..2347725) 1 NC_011060.1 SMART: LamG domain protein jellyroll fold domain protein; KEGG: afm:AFUA_8G07170 hypothetical protein; LamG domain-containing protein jellyroll fold domain-containing protein 2347725 6461309 Ppha_2261 Pelodictyon phaeoclathratiforme BU-1 LamG domain-containing protein jellyroll fold domain-containing protein YP_002019073.1 2345782 R 324925 CDS YP_002019074.1 194337280 6461850 complement(2347796..2348269) 1 NC_011060.1 hypothetical protein 2348269 6461850 Ppha_2262 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019074.1 2347796 R 324925 CDS YP_002019075.1 194337281 6462671 complement(2348433..2348729) 1 NC_011060.1 hypothetical protein 2348729 6462671 Ppha_2263 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019075.1 2348433 R 324925 CDS YP_002019076.1 194337282 6462668 complement(2348704..2349327) 1 NC_011060.1 PFAM: protein of unknown function DUF1105; KEGG: lil:LB146 hypothetical protein; hypothetical protein 2349327 6462668 Ppha_2264 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019076.1 2348704 R 324925 CDS YP_002019077.1 194337283 6462606 complement(2349687..2350451) 1 NC_011060.1 PFAM: N-acetyltransferase; KEGG: cph:Cpha266_1973 N-acetyltransferase; N-acetyltransferase 2350451 6462606 Ppha_2265 Pelodictyon phaeoclathratiforme BU-1 N-acetyltransferase YP_002019077.1 2349687 R 324925 CDS YP_002019078.1 194337284 6462577 2350683..2351333 1 NC_011060.1 KEGG: cph:Cpha266_1559 hypothetical protein; hypothetical protein 2351333 6462577 Ppha_2266 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019078.1 2350683 D 324925 CDS YP_002019079.1 194337285 6462487 complement(2351359..2351505) 1 NC_011060.1 hypothetical protein 2351505 6462487 Ppha_2267 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019079.1 2351359 R 324925 CDS YP_002019080.1 194337286 6462405 complement(2351502..2351813) 1 NC_011060.1 KEGG: cau:Caur_0439 hypothetical protein; hypothetical protein 2351813 6462405 Ppha_2268 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019080.1 2351502 R 324925 CDS YP_002019081.1 194337287 6462227 complement(2352146..2353342) 1 NC_011060.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cte:CT1232 geranylgeranyl hydrogenase BchP; geranylgeranyl reductase 2353342 6462227 Ppha_2269 Pelodictyon phaeoclathratiforme BU-1 geranylgeranyl reductase YP_002019081.1 2352146 R 324925 CDS YP_002019082.1 194337288 6462144 complement(2353451..2353705) 1 NC_011060.1 hypothetical protein 2353705 6462144 Ppha_2270 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019082.1 2353451 R 324925 CDS YP_002019083.1 194337289 6462128 complement(2353800..2354018) 1 NC_011060.1 KEGG: dol:Dole_0659 hypothetical protein; hypothetical protein 2354018 6462128 Ppha_2271 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019083.1 2353800 R 324925 CDS YP_002019084.1 194337290 6462051 complement(2354018..2354302) 1 NC_011060.1 PFAM: protein of unknown function DUF497; KEGG: syn:ssr0757 hypothetical protein; hypothetical protein 2354302 6462051 Ppha_2272 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019084.1 2354018 R 324925 CDS YP_002019085.1 194337291 6461912 complement(2354648..2354962) 1 NC_011060.1 TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family; transcriptional regulator 2354962 6461912 Ppha_2273 Pelodictyon phaeoclathratiforme BU-1 transcriptional regulator YP_002019085.1 2354648 R 324925 CDS YP_002019086.1 194337292 6461897 complement(2355229..2355768) 1 NC_011060.1 hypothetical protein 2355768 6461897 Ppha_2274 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019086.1 2355229 R 324925 CDS YP_002019087.1 194337293 6461837 complement(2356100..2356330) 1 NC_011060.1 KEGG: mhu:Mhun_0713 hypothetical protein; hypothetical protein 2356330 6461837 Ppha_2275 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019087.1 2356100 R 324925 CDS YP_002019088.1 194337294 6461634 2356435..2356596 1 NC_011060.1 hypothetical protein 2356596 6461634 Ppha_2276 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019088.1 2356435 D 324925 CDS YP_002019089.1 194337295 6462271 2356577..2356762 1 NC_011060.1 KEGG: net:Neut_0161 ATP-binding region, ATPase-like; ATP-binding region, ATPase-like protein 2356762 6462271 Ppha_2277 Pelodictyon phaeoclathratiforme BU-1 ATP-binding region, ATPase-like protein YP_002019089.1 2356577 D 324925 CDS YP_002019090.1 194337296 6461266 2356796..2357206 1 NC_011060.1 KEGG: noc:Noc_0061 hypothetical protein; hypothetical protein 2357206 6461266 Ppha_2278 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019090.1 2356796 D 324925 CDS YP_002019091.1 194337297 6461134 2357219..2357821 1 NC_011060.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cch:Cag_0504 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 2357821 6461134 Ppha_2279 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylglycinamide formyltransferase YP_002019091.1 2357219 D 324925 CDS YP_002019092.1 194337298 6460873 2357818..2358489 1 NC_011060.1 PFAM: radical SAM protein; KEGG: cph:Cpha266_1979 radical SAM protein; radical SAM protein 2358489 6460873 Ppha_2280 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002019092.1 2357818 D 324925 CDS YP_002019093.1 194337299 6461537 2358689..2359702 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1980 glycosyl transferase, family 2; family 2 glycosyl transferase 2359702 6461537 Ppha_2281 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002019093.1 2358689 D 324925 CDS YP_002019094.1 194337300 6460933 2359731..2360573 1 NC_011060.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2360573 6460933 Ppha_2282 Pelodictyon phaeoclathratiforme BU-1 endonuclease IV YP_002019094.1 2359731 D 324925 CDS YP_002019095.1 194337301 6461040 complement(2360582..2361463) 1 NC_011060.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1982 cell division protein FtsX; hypothetical protein 2361463 6461040 Ppha_2283 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019095.1 2360582 R 324925 CDS YP_002019096.1 194337302 6461376 complement(2361703..2362227) 1 NC_011060.1 KEGG: cph:Cpha266_1983 hypothetical protein; hypothetical protein 2362227 6461376 Ppha_2284 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019096.1 2361703 R 324925 CDS YP_002019097.1 194337303 6461833 2362523..2364016 1 NC_011060.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; KEGG: cph:Cpha266_1989 amidophosphoribosyltransferase; amidophosphoribosyltransferase 2364016 6461833 Ppha_2285 Pelodictyon phaeoclathratiforme BU-1 amidophosphoribosyltransferase YP_002019097.1 2362523 D 324925 CDS YP_002019098.1 194337304 6461998 complement(2364020..2364454) 1 NC_011060.1 KEGG: plt:Plut_0424 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 2364454 6461998 Ppha_2286 Pelodictyon phaeoclathratiforme BU-1 TraR/DksA family transcriptional regulator YP_002019098.1 2364020 R 324925 CDS YP_002019099.1 194337305 6462074 complement(2364529..2367786) 1 NC_011060.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 2367786 ileS 6462074 ileS Pelodictyon phaeoclathratiforme BU-1 isoleucyl-tRNA synthetase YP_002019099.1 2364529 R 324925 CDS YP_002019100.1 194337306 6462209 complement(2367960..2368166) 1 NC_011060.1 KEGG: cch:Cag_0522 hypothetical protein; hypothetical protein 2368166 6462209 Ppha_2288 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019100.1 2367960 R 324925 CDS YP_002019101.1 194337307 6462291 complement(2368312..2369727) 1 NC_011060.1 KEGG: cch:Cag_0518 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2369727 6462291 Ppha_2289 Pelodictyon phaeoclathratiforme BU-1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_002019101.1 2368312 R 324925 CDS YP_002019102.1 194337308 6462485 complement(2369750..2370727) 1 NC_011060.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: plt:Plut_0420 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 2370727 6462485 Ppha_2290 Pelodictyon phaeoclathratiforme BU-1 UDP-glucose 4-epimerase YP_002019102.1 2369750 R 324925 CDS YP_002019103.1 194337309 6462547 complement(2370770..2371819) 1 NC_011060.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0516 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 2371819 6462547 Ppha_2291 Pelodictyon phaeoclathratiforme BU-1 dTDP-glucose 4,6-dehydratase YP_002019103.1 2370770 R 324925 CDS YP_002019104.1 194337310 6462582 complement(2371857..2372735) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0515 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 2372735 6462582 Ppha_2292 Pelodictyon phaeoclathratiforme BU-1 dTDP-4-dehydrorhamnose reductase YP_002019104.1 2371857 R 324925 CDS YP_002019105.1 194337311 6462625 2373418..2374053 1 NC_011060.1 hypothetical protein 2374053 6462625 Ppha_2293 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019105.1 2373418 D 324925 CDS YP_002019106.1 194337312 6462646 complement(2374131..2374961) 1 NC_011060.1 KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 2374961 6462646 Ppha_2294 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019106.1 2374131 R 324925 CDS YP_002019107.1 194337313 6462105 2375398..2376867 1 NC_011060.1 KEGG: hbu:Hbut_1342 hypothetical protein; hypothetical protein 2376867 6462105 Ppha_2295 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019107.1 2375398 D 324925 CDS YP_002019108.1 194337314 6462686 complement(2376944..2377495) 1 NC_011060.1 KEGG: cph:Cpha266_0295 hypothetical protein; hypothetical protein 2377495 6462686 Ppha_2296 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019108.1 2376944 R 324925 CDS YP_002019109.1 194337315 6462704 join(2377715..2378185,2378185..2379195) 1 NC_011060.1 hypothetical protein 2379195 6462704 Ppha_2297 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019109.1 2377715 D 324925 CDS YP_002019110.1 194337316 6462062 complement(2379611..2379862) 1 NC_011060.1 KEGG: cte:CT1122 hypothetical protein; hypothetical protein 2379862 6462062 Ppha_2298 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019110.1 2379611 R 324925 CDS YP_002019111.1 194337317 6461899 complement(2380035..2380655) 1 NC_011060.1 KEGG: cch:Cag_0514 dTDP-4-dehydrorhamnose 3,5-epimerase related; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 2380655 6461899 Ppha_2299 Pelodictyon phaeoclathratiforme BU-1 dTDP-4-dehydrorhamnose 3,5-epimerase YP_002019111.1 2380035 R 324925 CDS YP_002019112.1 194337318 6461556 complement(2380749..2381630) 1 NC_011060.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pvi:Cvib_0468 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 2381630 6461556 Ppha_2300 Pelodictyon phaeoclathratiforme BU-1 glucose-1-phosphate thymidylyltransferase YP_002019112.1 2380749 R 324925 CDS YP_002019113.1 194337319 6461879 complement(2381748..2381924) 1 NC_011060.1 hypothetical protein 2381924 6461879 Ppha_2301 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019113.1 2381748 R 324925 CDS YP_002019114.1 194337320 6461378 complement(2381905..2382171) 1 NC_011060.1 hypothetical protein 2382171 6461378 Ppha_2302 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019114.1 2381905 R 324925 CDS YP_002019115.1 194337321 6461170 complement(2382185..2383189) 1 NC_011060.1 PFAM: Bile acid:sodium symporter; KEGG: cch:Cag_0408 sodium/bile acid symporter family protein; bile acid:sodium symporter 2383189 6461170 Ppha_2303 Pelodictyon phaeoclathratiforme BU-1 bile acid:sodium symporter YP_002019115.1 2382185 R 324925 CDS YP_002019116.1 194337322 6461115 complement(2383576..2385087) 1 NC_011060.1 KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase 2385087 6461115 Ppha_2304 Pelodictyon phaeoclathratiforme BU-1 succinate CoA transferase YP_002019116.1 2383576 R 324925 CDS YP_002019117.1 194337323 6461067 complement(2385458..2386324) 1 NC_011060.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2386324 6461067 Ppha_2305 Pelodictyon phaeoclathratiforme BU-1 prolipoprotein diacylglyceryl transferase YP_002019117.1 2385458 R 324925 CDS YP_002019118.1 194337324 6461645 complement(2386398..2387453) 1 NC_011060.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cph:Cpha266_0142 uroporphyrinogen-III C-methyltransferase; uroporphyrin-III C-methyltransferase 2387453 6461645 Ppha_2306 Pelodictyon phaeoclathratiforme BU-1 uroporphyrin-III C-methyltransferase YP_002019118.1 2386398 R 324925 CDS YP_002019119.1 194337325 6462536 complement(2387484..2387933) 1 NC_011060.1 KEGG: cph:Cpha266_0141 porphyrin biosynthesis protein; porphyrin biosynthesis protein 2387933 6462536 Ppha_2307 Pelodictyon phaeoclathratiforme BU-1 porphyrin biosynthesis protein YP_002019119.1 2387484 R 324925 CDS YP_002019120.1 194337326 6462544 complement(2387983..2388114) 1 NC_011060.1 hypothetical protein 2388114 6462544 Ppha_2308 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019120.1 2387983 R 324925 CDS YP_002019121.1 194337327 6462411 complement(2388104..2389180) 1 NC_011060.1 PFAM: Polysulphide reductase NrfD; KEGG: cph:Cpha266_0140 polysulphide reductase, NrfD; polysulfide reductase NrfD 2389180 6462411 Ppha_2309 Pelodictyon phaeoclathratiforme BU-1 polysulfide reductase NrfD YP_002019121.1 2388104 R 324925 CDS YP_002019122.1 194337328 6462171 complement(2389190..2389966) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0139 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2389966 6462171 Ppha_2310 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002019122.1 2389190 R 324925 CDS YP_002019123.1 194337329 6461596 complement(2389966..2390346) 1 NC_011060.1 KEGG: cch:Cag_1946 hypothetical protein; hypothetical protein 2390346 6461596 Ppha_2311 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019123.1 2389966 R 324925 CDS YP_002019124.1 194337330 6461116 complement(2390339..2391991) 1 NC_011060.1 KEGG: cch:Cag_1947 DsrK protein; DsrK protein 2391991 6461116 Ppha_2312 Pelodictyon phaeoclathratiforme BU-1 DsrK protein YP_002019124.1 2390339 R 324925 CDS YP_002019125.1 194337331 6461801 complement(2391994..2392989) 1 NC_011060.1 PFAM: Nitrate reductase gamma subunit; KEGG: cph:Cpha266_0136 nitrate reductase, gamma subunit; Nitrate reductase gamma subunit 2392989 6461801 Ppha_2313 Pelodictyon phaeoclathratiforme BU-1 Nitrate reductase gamma subunit YP_002019125.1 2391994 R 324925 CDS YP_002019126.1 194337332 6462233 complement(2392986..2393456) 1 NC_011060.1 KEGG: cch:Cag_1949 hypothetical protein; hypothetical protein 2393456 6462233 Ppha_2314 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019126.1 2392986 R 324925 CDS YP_002019127.1 194337333 6462061 complement(2393501..2393794) 1 NC_011060.1 TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cph:Cpha266_0134 DsrH family protein; sulfur relay protein TusB/DsrH 2393794 6462061 Ppha_2315 Pelodictyon phaeoclathratiforme BU-1 sulfur relay protein TusB/DsrH YP_002019127.1 2393501 R 324925 CDS YP_002019128.1 194337334 6462352 complement(2393830..2394219) 1 NC_011060.1 TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cph:Cpha266_0133 DsrE family protein; sulfur relay protein TusC/DsrF 2394219 6462352 Ppha_2316 Pelodictyon phaeoclathratiforme BU-1 sulfur relay protein TusC/DsrF YP_002019128.1 2393830 R 324925 CDS YP_002019129.1 194337335 6462529 complement(2394224..2394583) 1 NC_011060.1 TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cph:Cpha266_0132 DsrE family protein; sulfur relay protein TusD/DsrE 2394583 6462529 Ppha_2317 Pelodictyon phaeoclathratiforme BU-1 sulfur relay protein TusD/DsrE YP_002019129.1 2394224 R 324925 CDS YP_002019130.1 194337336 6462528 complement(2394631..2395008) 1 NC_011060.1 KEGG: cph:Cpha266_0131 hypothetical protein; hypothetical protein 2395008 6462528 Ppha_2318 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019130.1 2394631 R 324925 CDS YP_002019131.1 194337337 6461450 complement(2395056..2396792) 1 NC_011060.1 unknown function; glutamate synthase (NADPH) small subunit 2396792 6461450 Ppha_2319 Pelodictyon phaeoclathratiforme BU-1 glutamate synthase (NADPH) small subunit YP_002019131.1 2395056 R 324925 CDS YP_002019132.1 194337338 6462503 complement(2396808..2397887) 1 NC_011060.1 KEGG: cph:Cpha266_0129 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type beta subunit 2397887 6462503 Ppha_2320 Pelodictyon phaeoclathratiforme BU-1 sulfite reductase, dissimilatory-type beta subunit YP_002019132.1 2396808 R 324925 CDS YP_002019133.1 194337339 6462510 complement(2397976..2399229) 1 NC_011060.1 KEGG: cph:Cpha266_0128 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit 2399229 6462510 Ppha_2321 Pelodictyon phaeoclathratiforme BU-1 sulfite reductase, dissimilatory-type alpha subunit YP_002019133.1 2397976 R 324925 CDS YP_002019134.1 194337340 6462630 complement(2399285..2399620) 1 NC_011060.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: cch:Cag_1957 sulfite reductase, dissimilatory-type, gamma subunit; TusE/DsrC/DsvC family sulfur relay protein 2399620 6462630 Ppha_2322 Pelodictyon phaeoclathratiforme BU-1 TusE/DsrC/DsvC family sulfur relay protein YP_002019134.1 2399285 R 324925 CDS YP_002019135.1 194337341 6462675 complement(2399852..2401219) 1 NC_011060.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0126 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2401219 6462675 Ppha_2323 Pelodictyon phaeoclathratiforme BU-1 cobyrinic acid a,c-diamide synthase YP_002019135.1 2399852 R 324925 CDS YP_002019136.1 194337342 6462689 complement(2401353..2401586) 1 NC_011060.1 PFAM: SirA family protein; KEGG: cph:Cpha266_0125 SirA family protein; SirA family protein 2401586 6462689 Ppha_2324 Pelodictyon phaeoclathratiforme BU-1 SirA family protein YP_002019136.1 2401353 R 324925 CDS YP_002019137.1 194337343 6462712 complement(2401645..2402112) 1 NC_011060.1 PFAM: Rhodanese domain protein; KEGG: cch:Cag_1960 rhodanese-like; rhodanese domain-containing protein 2402112 6462712 Ppha_2325 Pelodictyon phaeoclathratiforme BU-1 rhodanese domain-containing protein YP_002019137.1 2401645 R 324925 CDS YP_002019138.1 194337344 6463828 complement(2402208..2402717) 1 NC_011060.1 KEGG: cph:Cpha266_0123 hypothetical protein; hypothetical protein 2402717 6463828 Ppha_2326 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019138.1 2402208 R 324925 CDS YP_002019139.1 194337345 6463831 complement(2402876..2403289) 1 NC_011060.1 KEGG: cch:Cag_1962 hypothetical protein; hypothetical protein 2403289 6463831 Ppha_2327 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019139.1 2402876 R 324925 CDS YP_002019140.1 194337346 6461940 complement(2403308..2404264) 1 NC_011060.1 PFAM: protein of unknown function DUF81; KEGG: cch:Cag_1963 hypothetical protein; hypothetical protein 2404264 6461940 Ppha_2328 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019140.1 2403308 R 324925 CDS YP_002019141.1 194337347 6463829 complement(2404519..2405112) 1 NC_011060.1 SMART: Rhodanese domain protein; KEGG: cch:Cag_0955 rhodanese-like; rhodanese domain-containing protein 2405112 6463829 Ppha_2329 Pelodictyon phaeoclathratiforme BU-1 rhodanese domain-containing protein YP_002019141.1 2404519 R 324925 CDS YP_002019142.1 194337348 6462263 complement(2405211..2406638) 1 NC_011060.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cph:Cpha266_0843 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 2406638 6462263 Ppha_2330 Pelodictyon phaeoclathratiforme BU-1 aromatic hydrocarbon degradation membrane protein YP_002019142.1 2405211 R 324925 CDS YP_002019143.1 194337349 6462429 complement(2406935..2407363) 1 NC_011060.1 KEGG: plt:Plut_0415 hypothetical protein; hypothetical protein 2407363 6462429 Ppha_2331 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019143.1 2406935 R 324925 CDS YP_002019144.1 194337350 6462554 complement(2407430..2407939) 1 NC_011060.1 KEGG: cph:Cpha266_1999 hypothetical protein; hypothetical protein 2407939 6462554 Ppha_2332 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019144.1 2407430 R 324925 CDS YP_002019145.1 194337351 6462309 complement(2407954..2408778) 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_2000 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2408778 6462309 Ppha_2333 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002019145.1 2407954 R 324925 CDS YP_002019146.1 194337352 6461708 complement(2408806..2410107) 1 NC_011060.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; RuBisCo-like protein 2410107 6461708 Ppha_2334 Pelodictyon phaeoclathratiforme BU-1 RuBisCo-like protein YP_002019146.1 2408806 R 324925 CDS YP_002019147.1 194337353 6461961 complement(2410247..2411128) 1 NC_011060.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 aldolase; aldolase 2411128 6461961 Ppha_2335 Pelodictyon phaeoclathratiforme BU-1 aldolase YP_002019147.1 2410247 R 324925 CDS YP_002019148.1 194337354 6462399 complement(2411182..2413302) 1 NC_011060.1 PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_1642 short chain dehydrogenase; short chain dehydrogenase 2413302 6462399 Ppha_2336 Pelodictyon phaeoclathratiforme BU-1 short chain dehydrogenase YP_002019148.1 2411182 R 324925 CDS YP_002019149.1 194337355 6462272 complement(2413384..2413602) 1 NC_011060.1 KEGG: plt:Plut_0409 hypothetical protein; hypothetical protein 2413602 6462272 Ppha_2337 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019149.1 2413384 R 324925 CDS YP_002019150.1 194337356 6461603 complement(2413644..2414117) 1 NC_011060.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 2414117 6461603 Ppha_2338 Pelodictyon phaeoclathratiforme BU-1 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD YP_002019150.1 2413644 R 324925 CDS YP_002019151.1 194337357 6462425 complement(2414473..2416800) 1 NC_011060.1 PFAM: metallophosphoesterase; protein of unknown function DUF323; SEFIR domain protein; KEGG: cph:Cpha266_0068 protein of unknown function DUF323; hypothetical protein 2416800 6462425 Ppha_2339 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019151.1 2414473 R 324925 CDS YP_002019152.1 194337358 6462025 complement(2416977..2417201) 1 NC_011060.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cte:CT1521 hypothetical protein; addiction module protein 2417201 6462025 Ppha_2340 Pelodictyon phaeoclathratiforme BU-1 addiction module protein YP_002019152.1 2416977 R 324925 CDS YP_002019153.1 194337359 6460971 complement(2417486..2418520) 1 NC_011060.1 KEGG: cch:Cag_1695 reverse transcriptase family protein; reverse transcriptase family protein 2418520 6460971 Ppha_2342 Pelodictyon phaeoclathratiforme BU-1 reverse transcriptase family protein YP_002019153.1 2417486 R 324925 CDS YP_002019154.1 194337360 6462139 complement(2418495..2418956) 1 NC_011060.1 PFAM: HRDC domain protein; KEGG: cch:Cag_1694 HRDC; HRDC domain-containing protein 2418956 6462139 Ppha_2343 Pelodictyon phaeoclathratiforme BU-1 HRDC domain-containing protein YP_002019154.1 2418495 R 324925 CDS YP_002019155.1 194337361 6461626 complement(2419160..2422732) 1 NC_011060.1 PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; hypothetical protein 2422732 6461626 Ppha_2344 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019155.1 2419160 R 324925 CDS YP_002019156.1 194337362 6461172 2422915..2423535 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 2423535 6461172 Ppha_2345 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019156.1 2422915 D 324925 CDS YP_002019157.1 194337363 6462330 complement(join(2424302..2425312,2425312..2425782)) 1 NC_011060.1 hypothetical protein 2425782 6462330 Ppha_2347 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019157.1 2424302 R 324925 CDS YP_002019158.1 194337364 6461480 2429541..2430146 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 2430146 6461480 Ppha_2348 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019158.1 2429541 D 324925 CDS YP_002019159.1 194337365 6462345 complement(2430394..2433954) 1 NC_011060.1 PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; hypothetical protein 2433954 6462345 Ppha_2349 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019159.1 2430394 R 324925 CDS YP_002019160.1 194337366 6461422 2434184..2434666 1 NC_011060.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2434666 recX 6461422 recX Pelodictyon phaeoclathratiforme BU-1 recombination regulator RecX YP_002019160.1 2434184 D 324925 CDS YP_002019161.1 194337367 6461484 complement(2434688..2435398) 1 NC_011060.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2435398 pyrH 6461484 pyrH Pelodictyon phaeoclathratiforme BU-1 uridylate kinase YP_002019161.1 2434688 R 324925 CDS YP_002019162.1 194337368 6462447 complement(2435487..2436353) 1 NC_011060.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2436353 tsf 6462447 tsf Pelodictyon phaeoclathratiforme BU-1 elongation factor Ts YP_002019162.1 2435487 R 324925 CDS YP_002019163.1 194337369 6462084 complement(2436387..2437154) 1 NC_011060.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2437154 rpsB 6462084 rpsB Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S2 YP_002019163.1 2436387 R 324925 CDS YP_002019164.1 194337370 6462229 complement(2437314..2437703) 1 NC_011060.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 2437703 rpsI 6462229 rpsI Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S9 YP_002019164.1 2437314 R 324925 CDS YP_002019165.1 194337371 6461273 complement(2437721..2438170) 1 NC_011060.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 2438170 rplM 6461273 rplM Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L13 YP_002019165.1 2437721 R 324925 CDS YP_002019166.1 194337372 6461128 2438324..2439637 1 NC_011060.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2439637 engA 6461128 engA Pelodictyon phaeoclathratiforme BU-1 GTP-binding protein EngA YP_002019166.1 2438324 D 324925 CDS YP_002019167.1 194337373 6461804 2439702..2440598 1 NC_011060.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cph:Cpha266_2014 protein of unknown function DUF59; Cobyrinic acid ac-diamide synthase 2440598 6461804 Ppha_2357 Pelodictyon phaeoclathratiforme BU-1 Cobyrinic acid ac-diamide synthase YP_002019167.1 2439702 D 324925 CDS YP_002019168.1 194337374 6462439 2440694..2440954 1 NC_011060.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: plt:Plut_0398 NifU protein; nitrogen-fixing NifU domain-containing protein 2440954 6462439 Ppha_2358 Pelodictyon phaeoclathratiforme BU-1 nitrogen-fixing NifU domain-containing protein YP_002019168.1 2440694 D 324925 CDS YP_002019169.1 194337375 6462393 complement(2440963..2443440) 1 NC_011060.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cph:Cpha266_2016 cell divisionFtsK/SpoIIIE; cell division protein FtsK 2443440 6462393 Ppha_2359 Pelodictyon phaeoclathratiforme BU-1 cell division protein FtsK YP_002019169.1 2440963 R 324925 CDS YP_002019170.1 194337376 6461768 complement(2443484..2444581) 1 NC_011060.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 2444581 gcvT 6461768 gcvT Pelodictyon phaeoclathratiforme BU-1 glycine cleavage system aminomethyltransferase T YP_002019170.1 2443484 R 324925 CDS YP_002019171.1 194337377 6461419 complement(2444822..2445148) 1 NC_011060.1 KEGG: noc:Noc_0351 hypothetical protein; hypothetical protein 2445148 6461419 Ppha_2361 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019171.1 2444822 R 324925 CDS YP_002019172.1 194337378 6461312 complement(2445217..2445861) 1 NC_011060.1 PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1771 hypothetical protein; hypothetical protein 2445861 6461312 Ppha_2362 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019172.1 2445217 R 324925 CDS YP_002019173.1 194337379 6462040 complement(2445888..2446628) 1 NC_011060.1 PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1773 hypothetical protein; hypothetical protein 2446628 6462040 Ppha_2363 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019173.1 2445888 R 324925 CDS YP_002019174.1 194337380 6461220 complement(2447418..2449616) 1 NC_011060.1 KEGG: cph:Cpha266_2023 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 2449616 6461220 Ppha_2365 Pelodictyon phaeoclathratiforme BU-1 (p)ppGpp synthetase I SpoT/RelA YP_002019174.1 2447418 R 324925 CDS YP_002019175.1 194337381 6462126 complement(2449729..2451825) 1 NC_011060.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2451825 6462126 Ppha_2366 Pelodictyon phaeoclathratiforme BU-1 excinuclease ABC subunit B YP_002019175.1 2449729 R 324925 CDS YP_002019176.1 194337382 6462213 2451896..2452033 1 NC_011060.1 hypothetical protein 2452033 6462213 Ppha_2367 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019176.1 2451896 D 324925 CDS YP_002019177.1 194337383 6462522 2452058..2455003 1 NC_011060.1 PFAM: peptidase M16 domain protein; KEGG: cph:Cpha266_2025 peptidase M16 domain protein; peptidase M16 domain-containing protein 2455003 6462522 Ppha_2368 Pelodictyon phaeoclathratiforme BU-1 peptidase M16 domain-containing protein YP_002019177.1 2452058 D 324925 CDS YP_002019178.1 194337384 6461041 2455040..2456119 1 NC_011060.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cch:Cag_0302 hypothetical protein; YjgP/YjgQ family permease 2456119 6461041 Ppha_2369 Pelodictyon phaeoclathratiforme BU-1 YjgP/YjgQ family permease YP_002019178.1 2455040 D 324925 CDS YP_002019179.1 194337385 6462573 2456125..2456949 1 NC_011060.1 PFAM: protein of unknown function DUF62; KEGG: cch:Cag_0301 hypothetical protein; hypothetical protein 2456949 6462573 Ppha_2370 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019179.1 2456125 D 324925 CDS YP_002019180.1 194337386 6460977 2457031..2457789 1 NC_011060.1 KEGG: gur:Gura_1460 hypothetical protein; hypothetical protein 2457789 6460977 Ppha_2371 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019180.1 2457031 D 324925 CDS YP_002019181.1 194337387 6461970 2458646..2458879 1 NC_011060.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein; addiction module protein 2458879 6461970 Ppha_2372 Pelodictyon phaeoclathratiforme BU-1 addiction module protein YP_002019181.1 2458646 D 324925 CDS YP_002019182.1 194337388 6460855 complement(2459336..2459584) 1 NC_011060.1 hypothetical protein 2459584 6460855 Ppha_2374 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019182.1 2459336 R 324925 CDS YP_002019183.1 194337389 6460858 2459922..2460188 1 NC_011060.1 KEGG: amt:Amet_0300 hypothetical protein; hypothetical protein 2460188 6460858 Ppha_2375 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019183.1 2459922 D 324925 CDS YP_002019184.1 194337390 6462452 2460199..2460441 1 NC_011060.1 KEGG: amt:Amet_0301 hypothetical protein; hypothetical protein 2460441 6462452 Ppha_2376 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019184.1 2460199 D 324925 CDS YP_002019185.1 194337391 6461001 2460497..2461237 1 NC_011060.1 KEGG: cph:Cpha266_1718 hypothetical protein; hypothetical protein 2461237 6461001 Ppha_2377 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019185.1 2460497 D 324925 CDS YP_002019186.1 194337392 6462002 complement(2461402..2462703) 1 NC_011060.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; hypothetical protein 2462703 6462002 Ppha_2378 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019186.1 2461402 R 324925 CDS YP_002019187.1 194337393 6461666 2463026..2463988 1 NC_011060.1 KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 2463988 6461666 Ppha_2379 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019187.1 2463026 D 324925 CDS YP_002019188.1 194337394 6462378 complement(2464110..2465009) 1 NC_011060.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pvi:Cvib_0443 RNA polymerase, sigma 32 subunit, RpoH; RNA polymerase sigma-32 subunit RpoH 2465009 6462378 Ppha_2380 Pelodictyon phaeoclathratiforme BU-1 RNA polymerase sigma-32 subunit RpoH YP_002019188.1 2464110 R 324925 CDS YP_002019189.1 194337395 6460885 complement(2465181..2467892) 1 NC_011060.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2467892 valS 6460885 valS Pelodictyon phaeoclathratiforme BU-1 valyl-tRNA synthetase YP_002019189.1 2465181 R 324925 CDS YP_002019190.1 194337396 6460884 complement(2467910..2468587) 1 NC_011060.1 KEGG: plt:Plut_0385 peptidase S14, ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP 2468587 6460884 Ppha_2382 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent Clp protease, proteolytic subunit ClpP YP_002019190.1 2467910 R 324925 CDS YP_002019191.1 194337397 6460875 2468858..2469508 1 NC_011060.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 2469508 thyX 6460875 thyX Pelodictyon phaeoclathratiforme BU-1 FAD-dependent thymidylate synthase YP_002019191.1 2468858 D 324925 CDS YP_002019192.1 194337398 6460901 complement(2469505..2470344) 1 NC_011060.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cph:Cpha266_2032 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit beta 2470344 6460901 Ppha_2384 Pelodictyon phaeoclathratiforme BU-1 acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_002019192.1 2469505 R 324925 CDS YP_002019193.1 194337399 6460925 2470530..2473214 1 NC_011060.1 PFAM: surface antigen (D15); Patatin; KEGG: pvi:Cvib_0421 surface antigen (D15); patatin 2473214 6460925 Ppha_2385 Pelodictyon phaeoclathratiforme BU-1 patatin YP_002019193.1 2470530 D 324925 CDS YP_002019194.1 194337400 6460872 2473284..2474081 1 NC_011060.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2474081 6460872 Ppha_2386 Pelodictyon phaeoclathratiforme BU-1 stationary phase survival protein SurE YP_002019194.1 2473284 D 324925 CDS YP_002019195.1 194337401 6460860 2474086..2475777 1 NC_011060.1 KEGG: cch:Cag_0292 hypothetical protein; hypothetical protein 2475777 6460860 Ppha_2387 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019195.1 2474086 D 324925 CDS YP_002019196.1 194337402 6463088 complement(2475790..2476110) 1 NC_011060.1 KEGG: cph:Cpha266_2036 transcriptional regulator, Fis family; XRE family transcriptional regulator 2476110 6463088 Ppha_2388 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002019196.1 2475790 R 324925 CDS YP_002019197.1 194337403 6460869 2476164..2476562 1 NC_011060.1 KEGG: plt:Plut_0358 hypothetical protein; hypothetical protein 2476562 6460869 Ppha_2389 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019197.1 2476164 D 324925 CDS YP_002019198.1 194337404 6463113 complement(2476587..2477324) 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: pvi:Cvib_0416 conserved hypothetical protein 730; hypothetical protein 2477324 6463113 Ppha_2390 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019198.1 2476587 R 324925 CDS YP_002019199.1 194337405 6463102 complement(2477350..2477913) 1 NC_011060.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 2477913 6463102 Ppha_2391 Pelodictyon phaeoclathratiforme BU-1 anthranilate synthase component II YP_002019199.1 2477350 R 324925 CDS YP_002019200.1 194337406 6463097 complement(2477934..2479184) 1 NC_011060.1 KEGG: cch:Cag_0299 hypothetical protein; hypothetical protein 2479184 6463097 Ppha_2392 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019200.1 2477934 R 324925 CDS YP_002019201.1 194337407 6460909 complement(2479592..2479855) 1 NC_011060.1 KEGG: xom:XOO_3260 hypothetical protein; hypothetical protein 2479855 6460909 Ppha_2394 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019201.1 2479592 R 324925 CDS YP_002019202.1 194337408 6461337 complement(2479848..2480954) 1 NC_011060.1 PFAM: protein of unknown function DUF1016; KEGG: dol:Dole_2094 protein of unknown function DUF1016; hypothetical protein 2480954 6461337 Ppha_2395 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019202.1 2479848 R 324925 CDS YP_002019203.1 194337409 6460910 complement(2481659..2482591) 1 NC_011060.1 PFAM: diacylglycerol kinase catalytic region; KEGG: cph:Cpha266_2039 diacylglycerol kinase, catalytic region; diacylglycerol kinase catalytic subunit 2482591 6460910 Ppha_2397 Pelodictyon phaeoclathratiforme BU-1 diacylglycerol kinase catalytic subunit YP_002019203.1 2481659 R 324925 CDS YP_002019204.1 194337410 6460926 2483088..2483591 1 NC_011060.1 KEGG: cph:Cpha266_2043 hypothetical protein; hypothetical protein 2483591 6460926 Ppha_2398 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019204.1 2483088 D 324925 CDS YP_002019205.1 194337411 6460890 complement(2483673..2485055) 1 NC_011060.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2070 aldehyde dehydrogenase; Aldehyde Dehydrogenase 2485055 6460890 Ppha_2399 Pelodictyon phaeoclathratiforme BU-1 Aldehyde Dehydrogenase YP_002019205.1 2483673 R 324925 CDS YP_002019206.1 194337412 6460990 complement(2485117..2486076) 1 NC_011060.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pvi:Cvib_0411 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A 2486076 6460990 Ppha_2400 Pelodictyon phaeoclathratiforme BU-1 ribosome small subunit-dependent GTPase A YP_002019206.1 2485117 R 324925 CDS YP_002019207.1 194337413 6460948 complement(2486113..2488233) 1 NC_011060.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2488233 6460948 Ppha_2401 Pelodictyon phaeoclathratiforme BU-1 ATP-dependent DNA helicase RecG YP_002019207.1 2486113 R 324925 CDS YP_002019208.1 194337414 6460939 2488333..2488560 1 NC_011060.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2488560 rpmE 6460939 rpmE Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L31 YP_002019208.1 2488333 D 324925 CDS YP_002019209.1 194337415 6460931 2488609..2489169 1 NC_011060.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2489169 frr 6460931 frr Pelodictyon phaeoclathratiforme BU-1 ribosome recycling factor YP_002019209.1 2488609 D 324925 CDS YP_002019210.1 194337416 6460930 2489228..2489605 1 NC_011060.1 KEGG: nha:Nham_0574 antirestriction protein; antirestriction protein 2489605 6460930 Ppha_2404 Pelodictyon phaeoclathratiforme BU-1 antirestriction protein YP_002019210.1 2489228 D 324925 CDS YP_002019211.1 194337417 6460952 complement(2489660..2490103) 1 NC_011060.1 PFAM: transposase IS200-family protein; KEGG: amr:AM1_C0253 transposase, IS200-family; transposase IS200-family protein 2490103 6460952 Ppha_2405 Pelodictyon phaeoclathratiforme BU-1 transposase IS200-family protein YP_002019211.1 2489660 R 324925 CDS YP_002019212.1 194337418 6460918 complement(2490555..2491511) 1 NC_011060.1 KEGG: fps:FP1992 DNA recombination protein RmuC; hypothetical protein 2491511 6460918 Ppha_2406 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019212.1 2490555 R 324925 CDS YP_002019213.1 194337419 6461006 complement(2492544..2492714) 1 NC_011060.1 hypothetical protein 2492714 6461006 Ppha_2407 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019213.1 2492544 R 324925 CDS YP_002019214.1 194337420 6460999 2493543..2493836 1 NC_011060.1 PFAM: protein of unknown function DUF497; KEGG: rpe:RPE_1776 protein of unknown function DUF497; hypothetical protein 2493836 6460999 Ppha_2409 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019214.1 2493543 D 324925 CDS YP_002019215.1 194337421 6460982 2493817..2494113 1 NC_011060.1 KEGG: rpe:RPE_1775 hypothetical protein; hypothetical protein 2494113 6460982 Ppha_2410 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019215.1 2493817 D 324925 CDS YP_002019216.1 194337422 6460970 complement(2494171..2495406) 1 NC_011060.1 TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_2075 chlorophyllide reductase subunit Y; chlorophyllide reductase subunit Y 2495406 6460970 Ppha_2411 Pelodictyon phaeoclathratiforme BU-1 chlorophyllide reductase subunit Y YP_002019216.1 2494171 R 324925 CDS YP_002019217.1 194337423 6460951 complement(2495387..2496454) 1 NC_011060.1 PFAM: Sporulation domain protein; KEGG: cph:Cpha266_2076 sporulation domain protein; sporulation domain-containing protein 2496454 6460951 Ppha_2412 Pelodictyon phaeoclathratiforme BU-1 sporulation domain-containing protein YP_002019217.1 2495387 R 324925 CDS YP_002019218.1 194337424 6461039 2496658..2497866 1 NC_011060.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2497866 xseA 6461039 xseA Pelodictyon phaeoclathratiforme BU-1 exodeoxyribonuclease VII large subunit YP_002019218.1 2496658 D 324925 CDS YP_002019219.1 194337425 6460949 complement(2497844..2498587) 1 NC_011060.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 2498587 6460949 Ppha_2414 Pelodictyon phaeoclathratiforme BU-1 3-deoxy-manno-octulosonate cytidylyltransferase YP_002019219.1 2497844 R 324925 CDS YP_002019220.1 194337426 6461050 complement(2498604..2498897) 1 NC_011060.1 PFAM: protein of unknown function DUF167; KEGG: cph:Cpha266_2081 protein of unknown function DUF167; hypothetical protein 2498897 6461050 Ppha_2415 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019220.1 2498604 R 324925 CDS YP_002019221.1 194337427 6461047 complement(2498899..2499186) 1 NC_011060.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 2499186 gatC 6461047 gatC Pelodictyon phaeoclathratiforme BU-1 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_002019221.1 2498899 R 324925 CDS YP_002019222.1 194337428 6461051 complement(2499261..2500604) 1 NC_011060.1 KEGG: cph:Cpha266_2083 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 2500604 6461051 Ppha_2417 Pelodictyon phaeoclathratiforme BU-1 citrate synthase I YP_002019222.1 2499261 R 324925 CDS YP_002019223.1 194337429 6461071 complement(2500906..2501919) 1 NC_011060.1 PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_2084 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2501919 6461071 Ppha_2418 Pelodictyon phaeoclathratiforme BU-1 OmpA/MotB domain-containing protein YP_002019223.1 2500906 R 324925 CDS YP_002019224.1 194337430 6461094 complement(2501949..2502692) 1 NC_011060.1 KEGG: cch:Cag_0316 hypothetical protein; hypothetical protein 2502692 6461094 Ppha_2419 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019224.1 2501949 R 324925 CDS YP_002019225.1 194337431 6461010 complement(2502737..2502943) 1 NC_011060.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cph:Cpha266_2086 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2502943 6461010 Ppha_2420 Pelodictyon phaeoclathratiforme BU-1 heavy metal transport/detoxification protein YP_002019225.1 2502737 R 324925 CDS YP_002019226.1 194337432 6461101 2503111..2503710 1 NC_011060.1 PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_0399 hypothetical protein; hypothetical protein 2503710 6461101 Ppha_2421 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019226.1 2503111 D 324925 CDS YP_002019227.1 194337433 6461095 2503707..2505113 1 NC_011060.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: pvi:Cvib_0398 isochorismate synthase; isochorismate synthase 2505113 6461095 Ppha_2422 Pelodictyon phaeoclathratiforme BU-1 isochorismate synthase YP_002019227.1 2503707 D 324925 CDS YP_002019228.1 194337434 6462454 2505110..2506891 1 NC_011060.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: cch:Cag_1700 menaquinone biosynthesis protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 2506891 6462454 Ppha_2423 Pelodictyon phaeoclathratiforme BU-1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase YP_002019228.1 2505110 D 324925 CDS YP_002019229.1 194337435 6461156 2507078..2507800 1 NC_011060.1 KEGG: mem:Memar_0122 hypothetical protein; hypothetical protein 2507800 6461156 Ppha_2424 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019229.1 2507078 D 324925 CDS YP_002019230.1 194337436 6461203 2507818..2508885 1 NC_011060.1 KEGG: mbn:Mboo_1423 PKD domain containing protein; hypothetical protein 2508885 6461203 Ppha_2425 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019230.1 2507818 D 324925 CDS YP_002019231.1 194337437 6461056 complement(2509079..2509828) 1 NC_011060.1 KEGG: rrs:RoseRS_0300 hypothetical protein; hypothetical protein 2509828 6461056 Ppha_2426 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019231.1 2509079 R 324925 CDS YP_002019232.1 194337438 6461202 complement(2510027..2513161) 1 NC_011060.1 PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0460 protein of unknown function DUF323; signal transduction protein with Nacht domain 2513161 6461202 Ppha_2427 Pelodictyon phaeoclathratiforme BU-1 signal transduction protein with Nacht domain YP_002019232.1 2510027 R 324925 CDS YP_002019233.1 194337439 6461177 2513413..2513673 1 NC_011060.1 KEGG: rfe:RF_0889 hypothetical protein; hypothetical protein 2513673 6461177 Ppha_2428 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019233.1 2513413 D 324925 CDS YP_002019234.1 194337440 6461198 2513684..2514016 1 NC_011060.1 KEGG: cph:Cpha266_2540 hypothetical protein; hypothetical protein 2514016 6461198 Ppha_2429 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019234.1 2513684 D 324925 CDS YP_002019235.1 194337441 6461143 complement(2514032..2516767) 1 NC_011060.1 PFAM: restriction endonuclease; SMART: AAA ATPase; KEGG: cph:Cpha266_0840 ribosome assembly protein 4 (RSA4); signal transduction protein with Nacht domain 2516767 6461143 Ppha_2430 Pelodictyon phaeoclathratiforme BU-1 signal transduction protein with Nacht domain YP_002019235.1 2514032 R 324925 CDS YP_002019236.1 194337442 6461223 complement(2516764..2517420) 1 NC_011060.1 KEGG: lwe:lwe0236 transcriptional regulator, MarR family; hypothetical protein 2517420 6461223 Ppha_2431 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019236.1 2516764 R 324925 CDS YP_002019237.1 194337443 6461106 2518002..2518835 1 NC_011060.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1845 thioesterase, menaquinone synthesis protein; alpha/beta hydrolase fold protein 2518835 6461106 Ppha_2432 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002019237.1 2518002 D 324925 CDS YP_002019238.1 194337444 6461321 2518837..2519658 1 NC_011060.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2519658 6461321 Ppha_2433 Pelodictyon phaeoclathratiforme BU-1 naphthoate synthase YP_002019238.1 2518837 D 324925 CDS YP_002019239.1 194337445 6461233 2519655..2520728 1 NC_011060.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cph:Cpha266_2092 O-succinylbenzoate-CoA synthase; mandelate racemase/muconate lactonizing protein 2520728 6461233 Ppha_2434 Pelodictyon phaeoclathratiforme BU-1 mandelate racemase/muconate lactonizing protein YP_002019239.1 2519655 D 324925 CDS YP_002019240.1 194337446 6461251 2520716..2522158 1 NC_011060.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cch:Cag_1672 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase 2522158 6461251 Ppha_2435 Pelodictyon phaeoclathratiforme BU-1 o-succinylbenzoate--CoA ligase YP_002019240.1 2520716 D 324925 CDS YP_002019241.1 194337447 6461222 complement(2522126..2522671) 1 NC_011060.1 KEGG: plt:Plut_0325 hypothetical protein; hypothetical protein 2522671 6461222 Ppha_2436 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019241.1 2522126 R 324925 CDS YP_002019242.1 194337448 6461248 complement(2522678..2523424) 1 NC_011060.1 PFAM: dihydrodipicolinate reductase; KEGG: plt:Plut_0324 dihydrodipicolinate reductase; Dihydrodipicolinate reductase 2523424 6461248 Ppha_2437 Pelodictyon phaeoclathratiforme BU-1 Dihydrodipicolinate reductase YP_002019242.1 2522678 R 324925 CDS YP_002019243.1 194337449 6461213 complement(2523487..2524383) 1 NC_011060.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cph:Cpha266_2096 chromosome segregation DNA-binding protein; parB-like partition protein 2524383 6461213 Ppha_2438 Pelodictyon phaeoclathratiforme BU-1 parB-like partition protein YP_002019243.1 2523487 R 324925 CDS YP_002019244.1 194337450 6461020 complement(2524399..2525196) 1 NC_011060.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cch:Cag_1803 ATPase, ParA family; Cobyrinic acid ac-diamide synthase 2525196 6461020 Ppha_2439 Pelodictyon phaeoclathratiforme BU-1 Cobyrinic acid ac-diamide synthase YP_002019244.1 2524399 R 324925 CDS YP_002019245.1 194337451 6462312 2525632..2527014 1 NC_011060.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cph:Cpha266_2099 magnesium transporter; magnesium transporter 2527014 6462312 Ppha_2441 Pelodictyon phaeoclathratiforme BU-1 magnesium transporter YP_002019245.1 2525632 D 324925 CDS YP_002019246.1 194337452 6461207 2527030..2528703 1 NC_011060.1 PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cch:Cag_1800 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2528703 6461207 Ppha_2442 Pelodictyon phaeoclathratiforme BU-1 electron-transferring-flavoprotein dehydrogenase YP_002019246.1 2527030 D 324925 CDS YP_002019247.1 194337453 6461299 complement(2529064..2529963) 1 NC_011060.1 KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 2529963 6461299 Ppha_2444 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019247.1 2529064 R 324925 CDS YP_002019248.1 194337454 6461271 complement(2530108..2530986) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_0384 hypothetical protein; NmrA family protein 2530986 6461271 Ppha_2445 Pelodictyon phaeoclathratiforme BU-1 NmrA family protein YP_002019248.1 2530108 R 324925 CDS YP_002019249.1 194337455 6461241 2531302..2531688 1 NC_011060.1 TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: xom:XOO_4210 virulence associated protein; XRE family plasmid maintenance system antidote protein 2531688 6461241 Ppha_2447 Pelodictyon phaeoclathratiforme BU-1 XRE family plasmid maintenance system antidote protein YP_002019249.1 2531302 D 324925 CDS YP_002019250.1 194337456 6461342 complement(2531693..2532487) 1 NC_011060.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: cph:Cpha266_2044 CRISPR-associated protein Cas6; CRISPR-associated protein Cas6 2532487 6461342 Ppha_2448 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein Cas6 YP_002019250.1 2531693 R 324925 CDS YP_002019251.1 194337457 6461373 complement(2532500..2534005) 1 NC_011060.1 KEGG: cph:Cpha266_2045 hypothetical protein; hypothetical protein 2534005 6461373 Ppha_2449 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019251.1 2532500 R 324925 CDS YP_002019252.1 194337458 6461395 complement(2533978..2535276) 1 NC_011060.1 KEGG: cph:Cpha266_2046 CRISPR-associated RAMP protein, Csm5 family; hypothetical protein 2535276 6461395 Ppha_2450 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019252.1 2533978 R 324925 CDS YP_002019253.1 194337459 6461345 complement(2535282..2536346) 1 NC_011060.1 TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: cph:Cpha266_2047 CRISPR-associated RAMP protein, Csm4 family; Csm4 family CRISPR-associated RAMP protein 2536346 6461345 Ppha_2451 Pelodictyon phaeoclathratiforme BU-1 Csm4 family CRISPR-associated RAMP protein YP_002019253.1 2535282 R 324925 CDS YP_002019254.1 194337460 6461341 complement(2536343..2537200) 1 NC_011060.1 TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: tpt:Tpet_1095 CRISPR-associated RAMP protein, Csm3 family; Csm3 family CRISPR-associated RAMP protein 2537200 6461341 Ppha_2452 Pelodictyon phaeoclathratiforme BU-1 Csm3 family CRISPR-associated RAMP protein YP_002019254.1 2536343 R 324925 CDS YP_002019255.1 194337461 6462413 complement(2537216..2537635) 1 NC_011060.1 TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: mth:MTH1081 hypothetical protein; CRISPR-associated protein, Csm2 family 2537635 6462413 Ppha_2453 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein, Csm2 family YP_002019255.1 2537216 R 324925 CDS YP_002019256.1 194337462 6461195 complement(2537649..2539934) 1 NC_011060.1 TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: cph:Cpha266_2050 CRISPR-associated protein, Csm1 family; Csm1 family CRISPR-associated protein 2539934 6461195 Ppha_2454 Pelodictyon phaeoclathratiforme BU-1 Csm1 family CRISPR-associated protein YP_002019256.1 2537649 R 324925 CDS YP_002019257.1 194337463 6461307 complement(2540375..2540770) 1 NC_011060.1 KEGG: mmw:Mmwyl1_2687 hypothetical protein; hypothetical protein 2540770 6461307 Ppha_2456 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019257.1 2540375 R 324925 CDS YP_002019258.1 194337464 6461361 complement(2540778..2541350) 1 NC_011060.1 KEGG: cph:Cpha266_2052 hypothetical protein; hypothetical protein 2541350 6461361 Ppha_2457 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019258.1 2540778 R 324925 CDS YP_002019259.1 194337465 6461702 complement(2541387..2541671) 1 NC_011060.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cph:Cpha266_2055 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 2541671 6461702 Ppha_2458 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein Cas2 YP_002019259.1 2541387 R 324925 CDS YP_002019260.1 194337466 6461403 2541825..2544008 1 NC_011060.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); protein of unknown function DUF48; KEGG: cph:Cpha266_2054 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 2544008 6461403 Ppha_2459 Pelodictyon phaeoclathratiforme BU-1 CRISPR-associated protein Cas1 YP_002019260.1 2541825 D 324925 CDS YP_002019261.1 194337467 6461653 complement(2547361..2548551) 1 NC_011060.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: plt:Plut_1908 hypothetical protein; filamentation induced by cAMP protein fic 2548551 6461653 Ppha_2460 Pelodictyon phaeoclathratiforme BU-1 filamentation induced by cAMP protein fic YP_002019261.1 2547361 R 324925 CDS YP_002019262.1 194337468 6462430 2549170..2550255 1 NC_011060.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2550255 mnmA 6462430 mnmA Pelodictyon phaeoclathratiforme BU-1 tRNA-specific 2-thiouridylase MnmA YP_002019262.1 2549170 D 324925 CDS YP_002019263.1 194337469 6461844 2550271..2550948 1 NC_011060.1 PFAM: phospholipase/Carboxylesterase; KEGG: plt:Plut_0317 serine esterase; phospholipase/Carboxylesterase 2550948 6461844 Ppha_2462 Pelodictyon phaeoclathratiforme BU-1 phospholipase/Carboxylesterase YP_002019263.1 2550271 D 324925 CDS YP_002019264.1 194337470 6461048 2551027..2554749 1 NC_011060.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2554749 metH 6461048 metH Pelodictyon phaeoclathratiforme BU-1 B12-dependent methionine synthase YP_002019264.1 2551027 D 324925 CDS YP_002019265.1 194337471 6462356 complement(2554892..2555434) 1 NC_011060.1 KEGG: cph:Cpha266_1809 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2555434 6462356 Ppha_2464 Pelodictyon phaeoclathratiforme BU-1 metal dependent phosphohydrolase YP_002019265.1 2554892 R 324925 CDS YP_002019266.1 194337472 6461206 complement(2555680..2556252) 1 NC_011060.1 hypothetical protein 2556252 6461206 Ppha_2465 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019266.1 2555680 R 324925 CDS YP_002019267.1 194337473 6461785 complement(2556427..2557206) 1 NC_011060.1 KEGG: cph:Cpha266_0052 hypothetical protein; hypothetical protein 2557206 6461785 Ppha_2466 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019267.1 2556427 R 324925 CDS YP_002019268.1 194337474 6462656 complement(2557291..2557842) 1 NC_011060.1 hypothetical protein 2557842 6462656 Ppha_2467 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019268.1 2557291 R 324925 CDS YP_002019269.1 194337475 6462678 2558248..2558475 1 NC_011060.1 KEGG: cph:Cpha266_0202 chlorosome envelope protein B; chlorosome envelope protein B 2558475 6462678 Ppha_2468 Pelodictyon phaeoclathratiforme BU-1 chlorosome envelope protein B YP_002019269.1 2558248 D 324925 CDS YP_002019270.1 194337476 6462394 complement(2558553..2559026) 1 NC_011060.1 KEGG: cph:Cpha266_2141 hypothetical protein; hypothetical protein 2559026 6462394 Ppha_2469 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019270.1 2558553 R 324925 CDS YP_002019271.1 194337477 6462223 complement(2559031..2560680) 1 NC_011060.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cph:Cpha266_2142 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain 1 protein 2560680 6462223 Ppha_2470 Pelodictyon phaeoclathratiforme BU-1 peptidoglycan-binding domain 1 protein YP_002019271.1 2559031 R 324925 CDS YP_002019272.1 194337478 6461563 complement(2560697..2561422) 1 NC_011060.1 KEGG: cph:Cpha266_2143 hypothetical protein; hypothetical protein 2561422 6461563 Ppha_2471 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019272.1 2560697 R 324925 CDS YP_002019273.1 194337479 6461583 complement(2561623..2562240) 1 NC_011060.1 KEGG: pvi:Cvib_0378 hypothetical protein; hypothetical protein 2562240 6461583 Ppha_2472 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019273.1 2561623 R 324925 CDS YP_002019274.1 194337480 6461026 complement(2562264..2562992) 1 NC_011060.1 PFAM: protein of unknown function DUF541; KEGG: cph:Cpha266_2145 protein of unknown function DUF541; hypothetical protein 2562992 6461026 Ppha_2473 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019274.1 2562264 R 324925 CDS YP_002019275.1 194337481 6461873 complement(2563123..2563617) 1 NC_011060.1 KEGG: sal:Sala_1348 hypothetical protein; hypothetical protein 2563617 6461873 Ppha_2474 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019275.1 2563123 R 324925 CDS YP_002019276.1 194337482 6461396 complement(2563962..2564606) 1 NC_011060.1 PFAM: NLP/P60 protein; KEGG: cph:Cpha266_1344 NLP/P60 protein; NLP/P60 protein 2564606 6461396 Ppha_2476 Pelodictyon phaeoclathratiforme BU-1 NLP/P60 protein YP_002019276.1 2563962 R 324925 CDS YP_002019277.1 194337483 6463678 complement(2564835..2566001) 1 NC_011060.1 KEGG: mxa:MXAN_0010 CapA family protein; CapA family protein 2566001 6463678 Ppha_2477 Pelodictyon phaeoclathratiforme BU-1 CapA family protein YP_002019277.1 2564835 R 324925 CDS YP_002019278.1 194337484 6463675 complement(2566001..2567386) 1 NC_011060.1 KEGG: fps:FP1905 hypothetical protein; hypothetical protein 2567386 6463675 Ppha_2478 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019278.1 2566001 R 324925 CDS YP_002019279.1 194337485 6461022 complement(2567452..2568936) 1 NC_011060.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: fps:FP1906 probable sugar O-acetyltransferase precursor; membrane bound O-acyl transferase MBOAT family protein 2568936 6461022 Ppha_2479 Pelodictyon phaeoclathratiforme BU-1 membrane bound O-acyl transferase MBOAT family protein YP_002019279.1 2567452 R 324925 CDS YP_002019280.1 194337486 6463676 complement(2568917..2570329) 1 NC_011060.1 KEGG: fps:FP1907 hypothetical protein; hypothetical protein 2570329 6463676 Ppha_2480 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019280.1 2568917 R 324925 CDS YP_002019281.1 194337487 6461928 complement(2570436..2571131) 1 NC_011060.1 KEGG: cph:Cpha266_2147 hypothetical protein; hypothetical protein 2571131 6461928 Ppha_2481 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019281.1 2570436 R 324925 CDS YP_002019282.1 194337488 6463674 2571226..2572137 1 NC_011060.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: cph:Cpha266_2149 6-phosphogluconolactonase; 6-phosphogluconolactonase 2572137 6463674 Ppha_2482 Pelodictyon phaeoclathratiforme BU-1 6-phosphogluconolactonase YP_002019282.1 2571226 D 324925 CDS YP_002019283.1 194337489 6463673 complement(2572128..2573564) 1 NC_011060.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2573564 6463673 Ppha_2483 Pelodictyon phaeoclathratiforme BU-1 glucose-6-phosphate 1-dehydrogenase YP_002019283.1 2572128 R 324925 CDS YP_002019284.1 194337490 6463672 complement(2573577..2574476) 1 NC_011060.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 2574476 6463672 Ppha_2484 Pelodictyon phaeoclathratiforme BU-1 6-phosphogluconate dehydrogenase YP_002019284.1 2573577 R 324925 CDS YP_002019285.1 194337491 6463671 complement(2574517..2575680) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2155 glycosyl transferase, group 1; group 1 glycosyl transferase 2575680 6463671 Ppha_2485 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002019285.1 2574517 R 324925 CDS YP_002019286.1 194337492 6463670 complement(2575811..2576281) 1 NC_011060.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pvi:Cvib_0364 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2576281 6463670 Ppha_2486 Pelodictyon phaeoclathratiforme BU-1 YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_002019286.1 2575811 R 324925 CDS YP_002019287.1 194337493 6463664 complement(2576339..2576899) 1 NC_011060.1 KEGG: plt:Plut_0302 outer surface protein; outer surface protein 2576899 6463664 Ppha_2487 Pelodictyon phaeoclathratiforme BU-1 outer surface protein YP_002019287.1 2576339 R 324925 CDS YP_002019288.1 194337494 6463661 complement(2576972..2577760) 1 NC_011060.1 PFAM: Patatin; KEGG: cph:Cpha266_2157 patatin; patatin 2577760 6463661 Ppha_2488 Pelodictyon phaeoclathratiforme BU-1 patatin YP_002019288.1 2576972 R 324925 CDS YP_002019289.1 194337495 6463667 complement(2577757..2579148) 1 NC_011060.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2158 aldehyde dehydrogenase; Aldehyde Dehydrogenase 2579148 6463667 Ppha_2489 Pelodictyon phaeoclathratiforme BU-1 Aldehyde Dehydrogenase YP_002019289.1 2577757 R 324925 CDS YP_002019290.1 194337496 6463662 2579326..2580081 1 NC_011060.1 PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_2160 integral membrane protein TerC; integral membrane protein TerC 2580081 6463662 Ppha_2490 Pelodictyon phaeoclathratiforme BU-1 integral membrane protein TerC YP_002019290.1 2579326 D 324925 CDS YP_002019291.1 194337497 6463658 2580078..2580899 1 NC_011060.1 PFAM: UspA domain protein; KEGG: cph:Cpha266_2161 UspA domain protein; UspA domain-containing protein 2580899 6463658 Ppha_2491 Pelodictyon phaeoclathratiforme BU-1 UspA domain-containing protein YP_002019291.1 2580078 D 324925 CDS YP_002019292.1 194337498 6463652 complement(2580983..2581792) 1 NC_011060.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cph:Cpha266_2163 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 2581792 6463652 Ppha_2492 Pelodictyon phaeoclathratiforme BU-1 tRNA/rRNA methyltransferase SpoU YP_002019292.1 2580983 R 324925 CDS YP_002019293.1 194337499 6463651 complement(2581789..2582598) 1 NC_011060.1 KEGG: cph:Cpha266_2164 hypothetical protein; hypothetical protein 2582598 6463651 Ppha_2493 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019293.1 2581789 R 324925 CDS YP_002019294.1 194337500 6463649 complement(2582768..2583433) 1 NC_011060.1 KEGG: syw:SYNW2410 hypothetical protein; hypothetical protein 2583433 6463649 Ppha_2494 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019294.1 2582768 R 324925 CDS YP_002019295.1 194337501 6463646 2584009..2585250 1 NC_011060.1 PFAM: peptidase U32; KEGG: cph:Cpha266_2165 peptidase U32; peptidase U32 2585250 6463646 Ppha_2495 Pelodictyon phaeoclathratiforme BU-1 peptidase U32 YP_002019295.1 2584009 D 324925 CDS YP_002019296.1 194337502 6463648 2585322..2586401 1 NC_011060.1 KEGG: cph:Cpha266_2166 hydrogenase/sulfur reductase, beta subunit; hydrogenase/sulfur reductase subunit beta 2586401 6463648 Ppha_2496 Pelodictyon phaeoclathratiforme BU-1 hydrogenase/sulfur reductase subunit beta YP_002019296.1 2585322 D 324925 CDS YP_002019297.1 194337503 6463647 2586362..2587279 1 NC_011060.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cch:Cag_1567 hydrogenase/sulfur reductase, gamma subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2587279 6463647 Ppha_2497 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002019297.1 2586362 D 324925 CDS YP_002019298.1 194337504 6463643 2587281..2588057 1 NC_011060.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cph:Cpha266_2168 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2588057 6463643 Ppha_2498 Pelodictyon phaeoclathratiforme BU-1 NADH ubiquinone oxidoreductase 20 kDa subunit YP_002019298.1 2587281 D 324925 CDS YP_002019299.1 194337505 6463642 2588047..2589321 1 NC_011060.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cph:Cpha266_2169 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 2589321 6463642 Ppha_2499 Pelodictyon phaeoclathratiforme BU-1 nickel-dependent hydrogenase large subunit YP_002019299.1 2588047 D 324925 CDS YP_002019300.1 194337506 6463639 2589662..2590168 1 NC_011060.1 KEGG: cph:Cpha266_0524 hypothetical protein; hypothetical protein 2590168 6463639 Ppha_2501 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019300.1 2589662 D 324925 CDS YP_002019301.1 194337507 6463637 2590409..2590672 1 NC_011060.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: psp:PSPPH_B0056 DNA-damage-inducible protein; RelB/DinJ family addiction module antitoxin 2590672 6463637 Ppha_2503 Pelodictyon phaeoclathratiforme BU-1 RelB/DinJ family addiction module antitoxin YP_002019301.1 2590409 D 324925 CDS YP_002019302.1 194337508 6463820 2590659..2590940 1 NC_011060.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: nmu:Nmul_A2035 hypothetical protein; RelE/StbE family addiction module toxin 2590940 6463820 Ppha_2504 Pelodictyon phaeoclathratiforme BU-1 RelE/StbE family addiction module toxin YP_002019302.1 2590659 D 324925 CDS YP_002019303.1 194337509 6461955 complement(2591345..2591737) 1 NC_011060.1 KEGG: cbe:Cbei_2837 plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein 2591737 6461955 Ppha_2506 Pelodictyon phaeoclathratiforme BU-1 plasmid pRiA4b ORF-3 family protein YP_002019303.1 2591345 R 324925 CDS YP_002019304.1 194337510 6463805 2593425..2594561 1 NC_011060.1 KEGG: mgm:Mmc1_1577 hypothetical protein; hypothetical protein 2594561 6463805 Ppha_2512 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019304.1 2593425 D 324925 CDS YP_002019305.1 194337511 6463804 2594554..2595228 1 NC_011060.1 KEGG: dps:DPPB62 hypothetical protein; hypothetical protein 2595228 6463804 Ppha_2513 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019305.1 2594554 D 324925 CDS YP_002019306.1 194337512 6463801 complement(2595953..2596252) 1 NC_011060.1 KEGG: cph:Cpha266_0290 hypothetical protein; hypothetical protein 2596252 6463801 Ppha_2515 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019306.1 2595953 R 324925 CDS YP_002019307.1 194337513 6463787 complement(2598646..2598945) 1 NC_011060.1 KEGG: gur:Gura_1489 hypothetical protein; hypothetical protein 2598945 6463787 Ppha_2520 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019307.1 2598646 R 324925 CDS YP_002019308.1 194337514 6463786 complement(2599004..2599198) 1 NC_011060.1 KEGG: bbr:BB1689 hypothetical protein; hypothetical protein 2599198 6463786 Ppha_2521 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019308.1 2599004 R 324925 CDS YP_002019309.1 194337515 6463783 complement(2599331..2599738) 1 NC_011060.1 hypothetical protein 2599738 6463783 Ppha_2522 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019309.1 2599331 R 324925 CDS YP_002019310.1 194337516 6463779 complement(2599717..2600133) 1 NC_011060.1 KEGG: rpe:RPE_2175 hypothetical protein; hypothetical protein 2600133 6463779 Ppha_2523 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019310.1 2599717 R 324925 CDS YP_002019311.1 194337517 6463776 complement(2600866..2601072) 1 NC_011060.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1405 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 2601072 6463776 Ppha_2526 Pelodictyon phaeoclathratiforme BU-1 AbrB family transcriptional regulator YP_002019311.1 2600866 R 324925 CDS YP_002019312.1 194337518 6463769 complement(2601709..2601990) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: amt:Amet_3370 transcriptional regulator, XRE family; XRE family transcriptional regulator 2601990 6463769 Ppha_2529 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002019312.1 2601709 R 324925 CDS YP_002019313.1 194337519 6463761 2602498..2602971 1 NC_011060.1 KEGG: plt:Plut_0847 conserved hypothetical protein; conserved domain; hypothetical protein 2602971 6463761 Ppha_2532 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019313.1 2602498 D 324925 CDS YP_002019314.1 194337520 6463759 complement(2603482..2604801) 1 NC_011060.1 KEGG: cph:Cpha266_2628 hypothetical protein; hypothetical protein 2604801 6463759 Ppha_2533 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019314.1 2603482 R 324925 CDS YP_002019315.1 194337521 6463747 complement(2605800..2606564) 1 NC_011060.1 PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: cph:Cpha266_1210 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA zn finger domain-containing protein 2606564 6463747 Ppha_2536 Pelodictyon phaeoclathratiforme BU-1 DNA topoisomerase type IA zn finger domain-containing protein YP_002019315.1 2605800 R 324925 CDS YP_002019316.1 194337522 6463744 complement(2606731..2606955) 1 NC_011060.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ccr:CC_2903 cold-shock domain family protein; cold-shock DNA-binding domain-containing protein 2606955 6463744 Ppha_2537 Pelodictyon phaeoclathratiforme BU-1 cold-shock DNA-binding domain-containing protein YP_002019316.1 2606731 R 324925 CDS YP_002019317.1 194337523 6463742 complement(2607769..2608197) 1 NC_011060.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pvi:Cvib_0358 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2608197 6463742 Ppha_2538 Pelodictyon phaeoclathratiforme BU-1 FKBP-type peptidylprolyl isomerase YP_002019317.1 2607769 R 324925 CDS YP_002019318.1 194337524 6463740 complement(2608335..2609417) 1 NC_011060.1 PFAM: MscS Mechanosensitive ion channel; KEGG: plt:Plut_0292 hypothetical protein; mechanosensitive ion channel MscS 2609417 6463740 Ppha_2539 Pelodictyon phaeoclathratiforme BU-1 mechanosensitive ion channel MscS YP_002019318.1 2608335 R 324925 CDS YP_002019319.1 194337525 6463738 complement(2609469..2610662) 1 NC_011060.1 PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase; FAD dependent oxidoreductase 2610662 6463738 Ppha_2540 Pelodictyon phaeoclathratiforme BU-1 FAD dependent oxidoreductase YP_002019319.1 2609469 R 324925 CDS YP_002019320.1 194337526 6463739 complement(2610823..2611338) 1 NC_011060.1 KEGG: cph:Cpha266_2271 acetyltransferase, CysE/LacA/LpxA/NodL family; CysE/LacA/LpxA/NodL family acetyltransferase 2611338 6463739 Ppha_2541 Pelodictyon phaeoclathratiforme BU-1 CysE/LacA/LpxA/NodL family acetyltransferase YP_002019320.1 2610823 R 324925 CDS YP_002019321.1 194337527 6463736 2611577..2611834 1 NC_011060.1 PFAM: bacteriochlorophyll C binding protein; KEGG: plt:Plut_2013 chlorosome envelope protein E; bacteriochlorophyll C binding protein 2611834 6463736 Ppha_2542 Pelodictyon phaeoclathratiforme BU-1 bacteriochlorophyll C binding protein YP_002019321.1 2611577 D 324925 CDS YP_002019322.1 194337528 6463734 2612177..2612707 1 NC_011060.1 KEGG: cph:Cpha266_1383 hypothetical protein; hypothetical protein 2612707 6463734 Ppha_2543 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019322.1 2612177 D 324925 CDS YP_002019323.1 194337529 6463733 2612725..2613231 1 NC_011060.1 KEGG: cph:Cpha266_1384 transposase family protein; transposase family protein 2613231 6463733 Ppha_2544 Pelodictyon phaeoclathratiforme BU-1 transposase family protein YP_002019323.1 2612725 D 324925 CDS YP_002019324.1 194337530 6463731 2613346..2614290 1 NC_011060.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cch:Cag_0411 AraC family transcripiotnal regulator; AraC family transcripiotnal regulator 2614290 6463731 Ppha_2545 Pelodictyon phaeoclathratiforme BU-1 AraC family transcripiotnal regulator YP_002019324.1 2613346 D 324925 CDS YP_002019325.1 194337531 6463730 2614371..2615105 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0353 ABC transporter related; ABC transporter-like protein 2615105 6463730 Ppha_2546 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002019325.1 2614371 D 324925 CDS YP_002019326.1 194337532 6463727 2615142..2616569 1 NC_011060.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: cph:Cpha266_2274 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2616569 6463727 Ppha_2547 Pelodictyon phaeoclathratiforme BU-1 metal dependent phosphohydrolase YP_002019326.1 2615142 D 324925 CDS YP_002019327.1 194337533 6463725 2616679..2617002 1 NC_011060.1 KEGG: pvi:Cvib_0351 hypothetical protein; hypothetical protein 2617002 6463725 Ppha_2548 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019327.1 2616679 D 324925 CDS YP_002019328.1 194337534 6463723 2617006..2617797 1 NC_011060.1 PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1627 3-oxoadipate enol-lactonase; alpha/beta hydrolase fold protein 2617797 6463723 Ppha_2549 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002019328.1 2617006 D 324925 CDS YP_002019329.1 194337535 6463722 complement(2617819..2619120) 1 NC_011060.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2619120 6463722 Ppha_2550 Pelodictyon phaeoclathratiforme BU-1 3-phosphoshikimate 1-carboxyvinyltransferase YP_002019329.1 2617819 R 324925 CDS YP_002019330.1 194337536 6463719 complement(2619202..2619399) 1 NC_011060.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 2619399 rpsU 6463719 rpsU Pelodictyon phaeoclathratiforme BU-1 30S ribosomal protein S21 YP_002019330.1 2619202 R 324925 CDS YP_002019331.1 194337537 6463720 complement(2619425..2619985) 1 NC_011060.1 KEGG: plt:Plut_0282 hypothetical protein; hypothetical protein 2619985 6463720 Ppha_2552 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019331.1 2619425 R 324925 CDS YP_002019332.1 194337538 6463716 complement(2620168..2621541) 1 NC_011060.1 PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: plt:Plut_0281 CBS; cysteine synthase 2621541 6463716 Ppha_2553 Pelodictyon phaeoclathratiforme BU-1 cysteine synthase YP_002019332.1 2620168 R 324925 CDS YP_002019333.1 194337539 6463713 2621798..2622895 1 NC_011060.1 KEGG: cch:Cag_1635 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 2622895 6463713 Ppha_2554 Pelodictyon phaeoclathratiforme BU-1 alanine racemase YP_002019333.1 2621798 D 324925 CDS YP_002019334.1 194337540 6463715 2622892..2623410 1 NC_011060.1 SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cch:Cag_1625 helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix DNA-binding class 1 2623410 6463715 Ppha_2555 Pelodictyon phaeoclathratiforme BU-1 helix-hairpin-helix DNA-binding class 1 YP_002019334.1 2622892 D 324925 CDS YP_002019335.1 194337541 6463711 2623410..2624294 1 NC_011060.1 KEGG: cph:Cpha266_2286 hypothetical protein; hypothetical protein 2624294 6463711 Ppha_2556 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019335.1 2623410 D 324925 CDS YP_002019336.1 194337542 6463706 2624510..2625967 1 NC_011060.1 PFAM: ATPase; KEGG: rms:RMA_0723 archaeal ATPase family protein; ATPase 2625967 6463706 Ppha_2557 Pelodictyon phaeoclathratiforme BU-1 ATPase YP_002019336.1 2624510 D 324925 CDS YP_002019337.1 194337543 6462533 complement(2626013..2626219) 1 NC_011060.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1405 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 2626219 6462533 Ppha_2558 Pelodictyon phaeoclathratiforme BU-1 AbrB family transcriptional regulator YP_002019337.1 2626013 R 324925 CDS YP_002019338.1 194337544 6462537 complement(2626414..2627439) 1 NC_011060.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: cph:Cpha266_2287 aspartate semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 2627439 6462537 Ppha_2559 Pelodictyon phaeoclathratiforme BU-1 aspartate-semialdehyde dehydrogenase YP_002019338.1 2626414 R 324925 CDS YP_002019339.1 194337545 6461366 complement(2627446..2628504) 1 NC_011060.1 TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: plt:Plut_0276 dihydrouridine synthase TIM-barrel protein nifR3; hypothetical protein 2628504 6461366 Ppha_2560 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019339.1 2627446 R 324925 CDS YP_002019340.1 194337546 6462500 complement(2628507..2629553) 1 NC_011060.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 2629553 recA 6462500 recA Pelodictyon phaeoclathratiforme BU-1 recombinase A YP_002019340.1 2628507 R 324925 CDS YP_002019341.1 194337547 6462279 complement(2629599..2630777) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; KEGG: cph:Cpha266_2290 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2630777 6462279 Ppha_2562 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002019341.1 2629599 R 324925 CDS YP_002019342.1 194337548 6461700 2631008..2632294 1 NC_011060.1 PFAM: peptidase M16 domain protein; KEGG: cch:Cag_0239 peptidase, M16 family; peptidase M16 domain-containing protein 2632294 6461700 Ppha_2563 Pelodictyon phaeoclathratiforme BU-1 peptidase M16 domain-containing protein YP_002019342.1 2631008 D 324925 CDS YP_002019343.1 194337549 6462176 2632391..2633671 1 NC_011060.1 PFAM: trigger factor domain protein; trigger factor domain; KEGG: pvi:Cvib_0337 trigger factor; trigger factor domain-containing protein 2633671 6462176 Ppha_2564 Pelodictyon phaeoclathratiforme BU-1 trigger factor domain-containing protein YP_002019343.1 2632391 D 324925 CDS YP_002019344.1 194337550 6462259 complement(2633750..2634112) 1 NC_011060.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 2634112 acpS 6462259 acpS Pelodictyon phaeoclathratiforme BU-1 4'-phosphopantetheinyl transferase YP_002019344.1 2633750 R 324925 CDS YP_002019345.1 194337551 6461444 complement(2634126..2635025) 1 NC_011060.1 KEGG: cph:Cpha266_2293 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 2635025 6461444 Ppha_2566 Pelodictyon phaeoclathratiforme BU-1 nicotinate-nucleotide pyrophosphorylase YP_002019345.1 2634126 R 324925 CDS YP_002019346.1 194337552 6462497 2635326..2635661 1 NC_011060.1 KEGG: cjr:CJE1434 hypothetical protein; hypothetical protein 2635661 6462497 Ppha_2567 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019346.1 2635326 D 324925 CDS YP_002019347.1 194337553 6462512 2635727..2636104 1 NC_011060.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pvi:Cvib_0334 dihydroneopterin aldolase; dihydroneopterin aldolase 2636104 6462512 Ppha_2568 Pelodictyon phaeoclathratiforme BU-1 dihydroneopterin aldolase YP_002019347.1 2635727 D 324925 CDS YP_002019348.1 194337554 6462186 2636109..2636636 1 NC_011060.1 KEGG: plt:Plut_0268 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2636636 6462186 Ppha_2569 Pelodictyon phaeoclathratiforme BU-1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_002019348.1 2636109 D 324925 CDS YP_002019349.1 194337555 6461779 complement(2636691..2637845) 1 NC_011060.1 PFAM: Anion-transporting ATPase; KEGG: cch:Cag_0217 anion-transporting ATPase; arsenite-transporting ATPase 2637845 6461779 Ppha_2570 Pelodictyon phaeoclathratiforme BU-1 arsenite-transporting ATPase YP_002019349.1 2636691 R 324925 CDS YP_002019350.1 194337556 6462604 complement(2637893..2639419) 1 NC_011060.1 KEGG: cch:Cag_0218 hypothetical protein; hypothetical protein 2639419 6462604 Ppha_2571 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019350.1 2637893 R 324925 CDS YP_002019351.1 194337557 6462608 complement(2639599..2639841) 1 NC_011060.1 PFAM: bacteriochlorophyll C binding protein; KEGG: plt:Plut_0265 chlorosome envelope protein A; bacteriochlorophyll C binding protein 2639841 6462608 Ppha_2572 Pelodictyon phaeoclathratiforme BU-1 bacteriochlorophyll C binding protein YP_002019351.1 2639599 R 324925 CDS YP_002019352.1 194337558 6462607 complement(2639990..2640409) 1 NC_011060.1 KEGG: cch:Cag_0220 chlorosome envelope protein C; chlorosome envelope protein C 2640409 6462607 Ppha_2573 Pelodictyon phaeoclathratiforme BU-1 chlorosome envelope protein C YP_002019352.1 2639990 R 324925 CDS YP_002019353.1 194337559 6461680 complement(2640537..2641763) 1 NC_011060.1 KEGG: cph:Cpha266_2301 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2641763 6461680 Ppha_2574 Pelodictyon phaeoclathratiforme BU-1 arsenite-activated ATPase ArsA YP_002019353.1 2640537 R 324925 CDS YP_002019354.1 194337560 6462469 2641992..2642786 1 NC_011060.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cph:Cpha266_2302 dihydroorotate oxidase B, electron transfer subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2642786 6462469 Ppha_2575 Pelodictyon phaeoclathratiforme BU-1 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_002019354.1 2641992 D 324925 CDS YP_002019355.1 194337561 6462575 2642862..2643338 1 NC_011060.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cch:Cag_0223 single-strand binding protein; single-strand binding protein 2643338 6462575 Ppha_2576 Pelodictyon phaeoclathratiforme BU-1 single-strand binding protein YP_002019355.1 2642862 D 324925 CDS YP_002019356.1 194337562 6463708 2643489..2644529 1 NC_011060.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: pvi:Cvib_0325 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2644529 6463708 Ppha_2577 Pelodictyon phaeoclathratiforme BU-1 DNA polymerase III subunit delta YP_002019356.1 2643489 D 324925 CDS YP_002019357.1 194337563 6463705 complement(2644544..2645545) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_0225 NAD-dependent epimerase/dehydratase family protein/3-beta hydroxysteroid dehydrogenase/isomerase family protein; NAD-dependent epimerase/dehydratase 2645545 6463705 Ppha_2578 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002019357.1 2644544 R 324925 CDS YP_002019358.1 194337564 6463702 2645774..2646976 1 NC_011060.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: cch:Cag_0226 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 2646976 6463702 Ppha_2579 Pelodictyon phaeoclathratiforme BU-1 8-amino-7-oxononanoate synthase YP_002019358.1 2645774 D 324925 CDS YP_002019359.1 194337565 6463699 2647299..2649809 1 NC_011060.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor; TonB-dependent receptor 2649809 6463699 Ppha_2580 Pelodictyon phaeoclathratiforme BU-1 TonB-dependent receptor YP_002019359.1 2647299 D 324925 CDS YP_002019360.1 194337566 6461138 2649962..2653765 1 NC_011060.1 KEGG: cph:Cpha266_2311 hydrogenobyrinic acid a,c-diamide cobaltochelatase; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase; magnesium chelatase subunit H 2653765 6461138 Ppha_2581 Pelodictyon phaeoclathratiforme BU-1 magnesium chelatase subunit H YP_002019360.1 2649962 D 324925 CDS YP_002019361.1 194337567 6462559 2653961..2654368 1 NC_011060.1 KEGG: cph:Cpha266_2312 hypothetical protein; hypothetical protein 2654368 6462559 Ppha_2582 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019361.1 2653961 D 324925 CDS YP_002019362.1 194337568 6463694 2654503..2658333 1 NC_011060.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis; magnesium chelatase subunit H 2658333 6463694 Ppha_2583 Pelodictyon phaeoclathratiforme BU-1 magnesium chelatase subunit H YP_002019362.1 2654503 D 324925 CDS YP_002019363.1 194337569 6463690 2658394..2659092 1 NC_011060.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 2659092 6463690 Ppha_2584 Pelodictyon phaeoclathratiforme BU-1 Mg-protoporphyrin IX methyl transferase YP_002019363.1 2658394 D 324925 CDS YP_002019364.1 194337570 6463691 2659239..2660879 1 NC_011060.1 KEGG: pvi:Cvib_0316 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2660879 6463691 Ppha_2585 Pelodictyon phaeoclathratiforme BU-1 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase YP_002019364.1 2659239 D 324925 CDS YP_002019365.1 194337571 6463681 complement(2660982..2661263) 1 NC_011060.1 TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: plt:Plut_1930 addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin 2661263 6463681 Ppha_2586 Pelodictyon phaeoclathratiforme BU-1 Txe/YoeB family addiction module toxin YP_002019365.1 2660982 R 324925 CDS YP_002019366.1 194337572 6463683 complement(2661245..2661502) 1 NC_011060.1 KEGG: cch:Cag_0601 hypothetical protein; hypothetical protein 2661502 6463683 Ppha_2587 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019366.1 2661245 R 324925 CDS YP_002019367.1 194337573 6461437 complement(2661499..2661639) 1 NC_011060.1 hypothetical protein 2661639 6461437 Ppha_2588 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019367.1 2661499 R 324925 CDS YP_002019368.1 194337574 6461399 complement(2661668..2663308) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: pme:NATL1_21041 hypothetical protein; group 1 glycosyl transferase 2663308 6461399 Ppha_2589 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002019368.1 2661668 R 324925 CDS YP_002019369.1 194337575 6461384 complement(2663371..2664453) 1 NC_011060.1 PFAM: acyltransferase 3; KEGG: sde:Sde_0174 acyltransferase-like; acyltransferase 3 2664453 6461384 Ppha_2590 Pelodictyon phaeoclathratiforme BU-1 acyltransferase 3 YP_002019369.1 2663371 R 324925 CDS YP_002019370.1 194337576 6461353 complement(2664593..2665825) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_0447 hypothetical protein; group 1 glycosyl transferase 2665825 6461353 Ppha_2591 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002019370.1 2664593 R 324925 CDS YP_002019371.1 194337577 6461415 complement(2665932..2666537) 1 NC_011060.1 PFAM: Methyltransferase type 11; KEGG: cch:Cag_1750 hypothetical protein; type 11 methyltransferase 2666537 6461415 Ppha_2592 Pelodictyon phaeoclathratiforme BU-1 type 11 methyltransferase YP_002019371.1 2665932 R 324925 CDS YP_002019372.1 194337578 6461460 2666929..2668650 1 NC_011060.1 PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein 2668650 6461460 Ppha_2593 Pelodictyon phaeoclathratiforme BU-1 transposase IS4 family protein YP_002019372.1 2666929 D 324925 CDS YP_002019373.1 194337579 6461442 complement(2668712..2672011) 1 NC_011060.1 PFAM: Hemolysin-type calcium-binding region; KEGG: ava:Ava_4160 VCBS; hemolysin-type calcium-binding protein 2672011 6461442 Ppha_2594 Pelodictyon phaeoclathratiforme BU-1 hemolysin-type calcium-binding protein YP_002019373.1 2668712 R 324925 CDS YP_002019374.1 194337580 6461435 complement(2672609..2678524) 1 NC_011060.1 PFAM: Hemolysin-type calcium-binding region; KEGG: ret:RHE_CH00724 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein; hemolysin-type calcium-binding protein 2678524 6461435 Ppha_2596 Pelodictyon phaeoclathratiforme BU-1 hemolysin-type calcium-binding protein YP_002019374.1 2672609 R 324925 CDS YP_002019375.1 194337581 6461433 complement(2678957..2679886) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dvl:Dvul_2392 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2679886 6461433 Ppha_2597 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002019375.1 2678957 R 324925 CDS YP_002019376.1 194337582 6461489 complement(2679877..2681133) 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: hau:Haur_1032 glycosyl transferase group 1; group 1 glycosyl transferase 2681133 6461489 Ppha_2598 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002019376.1 2679877 R 324925 CDS YP_002019377.1 194337583 6461429 2681423..2684293 1 NC_011060.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1481 glycosyltransferase-like; group 1 glycosyl transferase 2684293 6461429 Ppha_2599 Pelodictyon phaeoclathratiforme BU-1 group 1 glycosyl transferase YP_002019377.1 2681423 D 324925 CDS YP_002019378.1 194337584 6461411 2684290..2685225 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cch:Cag_1479 glycosyltransferase involved in cell wall biogenesis-like; family 2 glycosyl transferase 2685225 6461411 Ppha_2600 Pelodictyon phaeoclathratiforme BU-1 family 2 glycosyl transferase YP_002019378.1 2684290 D 324925 CDS YP_002019379.1 194337585 6461346 complement(2685330..2686235) 1 NC_011060.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pvi:Cvib_0671 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 2686235 6461346 Ppha_2601 Pelodictyon phaeoclathratiforme BU-1 lipid A biosynthesis acyltransferase YP_002019379.1 2685330 R 324925 CDS YP_002019380.1 194337586 6462540 2686356..2686868 1 NC_011060.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: cph:Cpha266_0346 RfaE bifunctional protein; rfaE bifunctional protein 2686868 6462540 Ppha_2602 Pelodictyon phaeoclathratiforme BU-1 rfaE bifunctional protein YP_002019380.1 2686356 D 324925 CDS YP_002019381.1 194337587 6461406 2686855..2691390 1 NC_011060.1 KEGG: cph:Cpha266_0345 hypothetical protein; hypothetical protein 2691390 6461406 Ppha_2603 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019381.1 2686855 D 324925 CDS YP_002019382.1 194337588 6461516 2691412..2692689 1 NC_011060.1 KEGG: pvi:Cvib_1568 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2692689 6461516 Ppha_2604 Pelodictyon phaeoclathratiforme BU-1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_002019382.1 2691412 D 324925 CDS YP_002019383.1 194337589 6461527 2692704..2693315 1 NC_011060.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cph:Cpha266_0343 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 2693315 6461527 Ppha_2605 Pelodictyon phaeoclathratiforme BU-1 phage SPO1 DNA polymerase-like protein YP_002019383.1 2692704 D 324925 CDS YP_002019384.1 194337590 6461523 2693331..2694854 1 NC_011060.1 KEGG: cch:Cag_1608 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase 2694854 6461523 Ppha_2606 Pelodictyon phaeoclathratiforme BU-1 replicative DNA helicase YP_002019384.1 2693331 D 324925 CDS YP_002019385.1 194337591 6461522 2694864..2696648 1 NC_011060.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cch:Cag_1607 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2696648 6461522 Ppha_2607 Pelodictyon phaeoclathratiforme BU-1 phosphoenolpyruvate-protein phosphotransferase YP_002019385.1 2694864 D 324925 CDS YP_002019386.1 194337592 6461514 complement(2696645..2698762) 1 NC_011060.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_0340 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2698762 6461514 Ppha_2608 Pelodictyon phaeoclathratiforme BU-1 PpiC-type peptidyl-prolyl cis-trans isomerase YP_002019386.1 2696645 R 324925 CDS YP_002019387.1 194337593 6461558 complement(2698788..2699450) 1 NC_011060.1 KEGG: cph:Cpha266_0339 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 2699450 6461558 Ppha_2609 Pelodictyon phaeoclathratiforme BU-1 protein-L-isoaspartate O-methyltransferase YP_002019387.1 2698788 R 324925 CDS YP_002019388.1 194337594 6461483 2699542..2700120 1 NC_011060.1 KEGG: cch:Cag_1211 hypothetical protein; hypothetical protein 2700120 6461483 Ppha_2610 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019388.1 2699542 D 324925 CDS YP_002019389.1 194337595 6461581 complement(2700168..2701121) 1 NC_011060.1 KEGG: cch:Cag_1212 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 2701121 6461581 Ppha_2611 Pelodictyon phaeoclathratiforme BU-1 signal recognition particle-docking protein FtsY YP_002019389.1 2700168 R 324925 CDS YP_002019390.1 194337596 6461472 2701208..2702299 1 NC_011060.1 TIGRFAM: thiamine-monophosphate kinase; KEGG: cph:Cpha266_0336 thiamine-monophosphate kinase; thiamine-monophosphate kinase 2702299 6461472 Ppha_2612 Pelodictyon phaeoclathratiforme BU-1 thiamine-monophosphate kinase YP_002019390.1 2701208 D 324925 CDS YP_002019391.1 194337597 6461594 2702570..2703679 1 NC_011060.1 PFAM: SMC domain protein; KEGG: rca:Rcas_4237 hypothetical protein; SMC domain-containing protein 2703679 6461594 Ppha_2613 Pelodictyon phaeoclathratiforme BU-1 SMC domain-containing protein YP_002019391.1 2702570 D 324925 CDS YP_002019392.1 194337598 6461579 2703679..2704365 1 NC_011060.1 KEGG: maq:Maqu_0563 hypothetical protein; hypothetical protein 2704365 6461579 Ppha_2614 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019392.1 2703679 D 324925 CDS YP_002019393.1 194337599 6461650 2704395..2705768 1 NC_011060.1 catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 2705768 6461650 Ppha_2615 Pelodictyon phaeoclathratiforme BU-1 tryptophan synthase subunit beta YP_002019393.1 2704395 D 324925 CDS YP_002019394.1 194337600 6461664 complement(2705826..2706611) 1 NC_011060.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: cch:Cag_0452 fic family protein; death-on-curing family protein 2706611 6461664 Ppha_2616 Pelodictyon phaeoclathratiforme BU-1 death-on-curing family protein YP_002019394.1 2705826 R 324925 CDS YP_002019395.1 194337601 6461536 complement(2706812..2709352) 1 NC_011060.1 PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0334 ATPase AAA-2 domain protein; ATPase AAA-2 domain-containing protein 2709352 6461536 Ppha_2617 Pelodictyon phaeoclathratiforme BU-1 ATPase AAA-2 domain-containing protein YP_002019395.1 2706812 R 324925 CDS YP_002019396.1 194337602 6461672 2709530..2709994 1 NC_011060.1 KEGG: cph:Cpha266_0333 hypothetical protein; hypothetical protein 2709994 6461672 Ppha_2618 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019396.1 2709530 D 324925 CDS YP_002019397.1 194337603 6461670 complement(2710209..2711210) 1 NC_011060.1 KEGG: cph:Cpha266_0316 hypothetical protein; hypothetical protein 2711210 6461670 Ppha_2619 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019397.1 2710209 R 324925 CDS YP_002019398.1 194337604 6461668 complement(2711388..2711882) 1 NC_011060.1 PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0314 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 2711882 6461668 Ppha_2620 Pelodictyon phaeoclathratiforme BU-1 Fur family ferric uptake regulator YP_002019398.1 2711388 R 324925 CDS YP_002019399.1 194337605 6461660 complement(2712064..2712801) 1 NC_011060.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM protein; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 2712801 6461660 Ppha_2621 Pelodictyon phaeoclathratiforme BU-1 anaerobic ribonucleoside-triphosphate reductase activating protein YP_002019399.1 2712064 R 324925 CDS YP_002019400.1 194337606 6461721 complement(2712801..2714960) 1 NC_011060.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2714960 6461721 Ppha_2622 Pelodictyon phaeoclathratiforme BU-1 anaerobic ribonucleoside triphosphate reductase YP_002019400.1 2712801 R 324925 CDS YP_002019401.1 194337607 6461689 complement(2715002..2715139) 1 NC_011060.1 hypothetical protein 2715139 6461689 Ppha_2623 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019401.1 2715002 R 324925 CDS YP_002019402.1 194337608 6461701 complement(2715766..2716590) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: cph:Cpha266_0311 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2716590 6461701 Ppha_2625 Pelodictyon phaeoclathratiforme BU-1 NAD-dependent epimerase/dehydratase YP_002019402.1 2715766 R 324925 CDS YP_002019403.1 194337609 6461693 complement(2716689..2716916) 1 NC_011060.1 KEGG: cte:CT0186 hypothetical protein; hypothetical protein 2716916 6461693 Ppha_2626 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019403.1 2716689 R 324925 CDS YP_002019404.1 194337610 6461676 complement(2716938..2718389) 1 NC_011060.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cph:Cpha266_2590 glycerol kinase; glycerol kinase 2718389 6461676 Ppha_2627 Pelodictyon phaeoclathratiforme BU-1 glycerol kinase YP_002019404.1 2716938 R 324925 CDS YP_002019405.1 194337611 6461737 complement(2718676..2719395) 1 NC_011060.1 KEGG: mul:MUL_3181 hypothetical protein; hypothetical protein 2719395 6461737 Ppha_2628 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019405.1 2718676 R 324925 CDS YP_002019406.1 194337612 6461675 2719844..2720923 1 NC_011060.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: pen:PSEEN4650 hypothetical protein; helix-turn-helix domain-containing protein 2720923 6461675 Ppha_2629 Pelodictyon phaeoclathratiforme BU-1 helix-turn-helix domain-containing protein YP_002019406.1 2719844 D 324925 CDS YP_002019407.1 194337613 6461743 2720907..2721389 1 NC_011060.1 KEGG: sfr:Sfri_1952 hypothetical protein; hypothetical protein 2721389 6461743 Ppha_2630 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019407.1 2720907 D 324925 CDS YP_002019408.1 194337614 6461739 2721502..2722296 1 NC_011060.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_1074 ABC transporter related; ABC transporter-like protein 2722296 6461739 Ppha_2631 Pelodictyon phaeoclathratiforme BU-1 ABC transporter-like protein YP_002019408.1 2721502 D 324925 CDS YP_002019409.1 194337615 6461741 2722293..2723078 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: ppd:Ppro_1073 conserved hypothetical protein 245; hypothetical protein 2723078 6461741 Ppha_2632 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019409.1 2722293 D 324925 CDS YP_002019410.1 194337616 6461803 2723576..2723794 1 NC_011060.1 KEGG: cch:Cag_1994 hypothetical protein; hypothetical protein 2723794 6461803 Ppha_2633 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019410.1 2723576 D 324925 CDS YP_002019411.1 194337617 6461704 2723791..2724090 1 NC_011060.1 KEGG: cch:Cag_1995 hypothetical protein; hypothetical protein 2724090 6461704 Ppha_2634 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019411.1 2723791 D 324925 CDS YP_002019412.1 194337618 6461773 complement(2724204..2724428) 1 NC_011060.1 TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cph:Cpha266_0253 addiction module component, TIGR02574 family; addiction module protein 2724428 6461773 Ppha_2635 Pelodictyon phaeoclathratiforme BU-1 addiction module protein YP_002019412.1 2724204 R 324925 CDS YP_002019413.1 194337619 6461778 complement(2724793..2725299) 1 NC_011060.1 KEGG: pna:Pnap_1139 hypothetical protein; hypothetical protein 2725299 6461778 Ppha_2636 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019413.1 2724793 R 324925 CDS YP_002019414.1 194337620 6461758 complement(2725302..2726363) 1 NC_011060.1 KEGG: pna:Pnap_1140 ATP-binding protein; ATP-binding protein 2726363 6461758 Ppha_2637 Pelodictyon phaeoclathratiforme BU-1 ATP-binding protein YP_002019414.1 2725302 R 324925 CDS YP_002019415.1 194337621 6461402 complement(2726461..2727198) 1 NC_011060.1 KEGG: cch:Cag_1574 hypothetical protein; hypothetical protein 2727198 6461402 Ppha_2638 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019415.1 2726461 R 324925 CDS YP_002019416.1 194337622 6461811 complement(2727203..2728456) 1 NC_011060.1 KEGG: cph:Cpha266_0306 hypothetical protein; hypothetical protein 2728456 6461811 Ppha_2639 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019416.1 2727203 R 324925 CDS YP_002019417.1 194337623 6462191 complement(2728542..2730029) 1 NC_011060.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_0305 amine oxidase; amine oxidase 2730029 6462191 Ppha_2640 Pelodictyon phaeoclathratiforme BU-1 amine oxidase YP_002019417.1 2728542 R 324925 CDS YP_002019418.1 194337624 6461819 complement(2730605..2731285) 1 NC_011060.1 PFAM: hypothetical protein; KEGG: cph:Cpha266_0303 DedA protein; hypothetical protein 2731285 6461819 Ppha_2641 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019418.1 2730605 R 324925 CDS YP_002019419.1 194337625 6461808 2731456..2732346 1 NC_011060.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_0302 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2732346 6461808 Ppha_2642 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002019419.1 2731456 D 324925 CDS YP_002019420.1 194337626 6461866 2732438..2734705 1 NC_011060.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cch:Cag_0590 penicillin-binding protein 1A; penicillin-binding protein 2734705 6461866 Ppha_2643 Pelodictyon phaeoclathratiforme BU-1 penicillin-binding protein YP_002019420.1 2732438 D 324925 CDS YP_002019421.1 194337627 6461906 2734740..2736281 1 NC_011060.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2736281 guaA 6461906 guaA Pelodictyon phaeoclathratiforme BU-1 GMP synthase YP_002019421.1 2734740 D 324925 CDS YP_002019422.1 194337628 6461783 2736336..2736779 1 NC_011060.1 PFAM: Rhodanese domain protein; KEGG: gsu:GSU0505 rhodanese-like domain protein; rhodanese domain-containing protein 2736779 6461783 Ppha_2645 Pelodictyon phaeoclathratiforme BU-1 rhodanese domain-containing protein YP_002019422.1 2736336 D 324925 CDS YP_002019423.1 194337629 6461917 join(2737208..2737678,2737678..2738688) 1 NC_011060.1 hypothetical protein 2738688 6461917 Ppha_2646 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019423.1 2737208 D 324925 CDS YP_002019424.1 194337630 6461835 complement(2738985..2739404) 1 NC_011060.1 KEGG: mba:Mbar_A1347 hypothetical protein; hypothetical protein 2739404 6461835 Ppha_2647 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019424.1 2738985 R 324925 CDS YP_002019425.1 194337631 6461852 complement(2739502..2739687) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: amt:Amet_3370 transcriptional regulator, XRE family; XRE family transcriptional regulator 2739687 6461852 Ppha_2648 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002019425.1 2739502 R 324925 CDS YP_002019426.1 194337632 6461875 2739828..2740058 1 NC_011060.1 KEGG: cch:Cag_1568 hypothetical protein; hypothetical protein 2740058 6461875 Ppha_2649 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019426.1 2739828 D 324925 CDS YP_002019427.1 194337633 6462226 2740055..2740477 1 NC_011060.1 KEGG: syn:sll1715 hypothetical protein; hypothetical protein 2740477 6462226 Ppha_2650 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019427.1 2740055 D 324925 CDS YP_002019428.1 194337634 6461825 2741367..2741843 1 NC_011060.1 KEGG: cph:Cpha266_1944 Legionella vir region protein; vir region protein-like protein 2741843 6461825 Ppha_2652 Pelodictyon phaeoclathratiforme BU-1 vir region protein-like protein YP_002019428.1 2741367 D 324925 CDS YP_002019429.1 194337635 6461926 2741922..2742899 1 NC_011060.1 KEGG: cph:Cpha266_0294 hypothetical protein; hypothetical protein 2742899 6461926 Ppha_2653 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019429.1 2741922 D 324925 CDS YP_002019430.1 194337636 6461922 complement(2743067..2743324) 1 NC_011060.1 KEGG: dac:Daci_4115 hypothetical protein; hypothetical protein 2743324 6461922 Ppha_2654 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019430.1 2743067 R 324925 CDS YP_002019431.1 194337637 6461918 complement(2744036..2744263) 1 NC_011060.1 hypothetical protein 2744263 6461918 Ppha_2655 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019431.1 2744036 R 324925 CDS YP_002019432.1 194337638 6461865 complement(2744326..2744775) 1 NC_011060.1 KEGG: rpb:RPB_0073 hypothetical protein; hypothetical protein 2744775 6461865 Ppha_2656 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019432.1 2744326 R 324925 CDS YP_002019433.1 194337639 6461964 complement(2744768..2745235) 1 NC_011060.1 KEGG: rpb:RPB_0074 hypothetical protein; hypothetical protein 2745235 6461964 Ppha_2657 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019433.1 2744768 R 324925 CDS YP_002019434.1 194337640 6461853 complement(2745519..2745764) 1 NC_011060.1 KEGG: cph:Cpha266_0265 hypothetical protein; hypothetical protein 2745764 6461853 Ppha_2658 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019434.1 2745519 R 324925 CDS YP_002019435.1 194337641 6461963 complement(2745761..2746018) 1 NC_011060.1 KEGG: cph:Cpha266_0264 hypothetical protein; hypothetical protein 2746018 6461963 Ppha_2659 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019435.1 2745761 R 324925 CDS YP_002019436.1 194337642 6461939 complement(2746155..2746589) 1 NC_011060.1 PFAM: phosphatase regulatory subunit; KEGG: cac:CA_P0129 glycogen-binding regulatory subunit of S/T protein phosphatase I; phosphatase regulatory subunit 2746589 6461939 Ppha_2660 Pelodictyon phaeoclathratiforme BU-1 phosphatase regulatory subunit YP_002019436.1 2746155 R 324925 CDS YP_002019437.1 194337643 6461935 complement(2746925..2747617) 1 NC_011060.1 hypothetical protein 2747617 6461935 Ppha_2661 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019437.1 2746925 R 324925 CDS YP_002019438.1 194337644 6462028 complement(2747834..2748310) 1 NC_011060.1 KEGG: slo:Shew_2745 hypothetical protein; hypothetical protein 2748310 6462028 Ppha_2662 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019438.1 2747834 R 324925 CDS YP_002019439.1 194337645 6461988 complement(2748437..2748700) 1 NC_011060.1 KEGG: cph:Cpha266_0270 hypothetical protein; hypothetical protein 2748700 6461988 Ppha_2663 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019439.1 2748437 R 324925 CDS YP_002019440.1 194337646 6461936 2748767..2749984 1 NC_011060.1 KEGG: cph:Cpha266_0250 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 2749984 6461936 Ppha_2664 Pelodictyon phaeoclathratiforme BU-1 phosphoserine phosphatase SerB YP_002019440.1 2748767 D 324925 CDS YP_002019441.1 194337647 6462334 complement(2750083..2750385) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0246 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2750385 6462334 Ppha_2665 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002019441.1 2750083 R 324925 CDS YP_002019442.1 194337648 6461995 complement(2750437..2750931) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0245 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2750931 6461995 Ppha_2666 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002019442.1 2750437 R 324925 CDS YP_002019443.1 194337649 6461980 complement(2751044..2752402) 1 NC_011060.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_0244 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2752402 6461980 Ppha_2667 Pelodictyon phaeoclathratiforme BU-1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_002019443.1 2751044 R 324925 CDS YP_002019444.1 194337650 6461972 complement(2752427..2755093) 1 NC_011060.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2755093 alaS 6461972 alaS Pelodictyon phaeoclathratiforme BU-1 alanyl-tRNA synthetase YP_002019444.1 2752427 R 324925 CDS YP_002019445.1 194337651 6462097 2755362..2755619 1 NC_011060.1 KEGG: pvi:Cvib_1596 hypothetical protein; hypothetical protein 2755619 6462097 Ppha_2669 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019445.1 2755362 D 324925 CDS YP_002019446.1 194337652 6462090 2755827..2757713 1 NC_011060.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0241 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2757713 6462090 Ppha_2670 Pelodictyon phaeoclathratiforme BU-1 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_002019446.1 2755827 D 324925 CDS YP_002019447.1 194337653 6462086 2757710..2758741 1 NC_011060.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2758741 6462086 Ppha_2671 Pelodictyon phaeoclathratiforme BU-1 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_002019447.1 2757710 D 324925 CDS YP_002019448.1 194337654 6462075 complement(2758798..2759805) 1 NC_011060.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2759805 6462075 Ppha_2672 Pelodictyon phaeoclathratiforme BU-1 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002019448.1 2758798 R 324925 CDS YP_002019449.1 194337655 6462004 complement(2759895..2760170) 1 NC_011060.1 PFAM: histone family protein DNA-binding protein; KEGG: plt:Plut_1957 histone-like DNA-binding protein; histone family protein DNA-binding protein 2760170 6462004 Ppha_2673 Pelodictyon phaeoclathratiforme BU-1 histone family protein DNA-binding protein YP_002019449.1 2759895 R 324925 CDS YP_002019450.1 194337656 6462015 2760259..2760408 1 NC_011060.1 hypothetical protein 2760408 6462015 Ppha_2674 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019450.1 2760259 D 324925 CDS YP_002019451.1 194337657 6462189 2760392..2760958 1 NC_011060.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2760958 6462189 Ppha_2675 Pelodictyon phaeoclathratiforme BU-1 elongation factor P YP_002019451.1 2760392 D 324925 CDS YP_002019452.1 194337658 6462185 2761011..2761466 1 NC_011060.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cch:Cag_0360 acetyl-CoA biotin carboxyl carrier; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2761466 6462185 Ppha_2676 Pelodictyon phaeoclathratiforme BU-1 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_002019452.1 2761011 D 324925 CDS YP_002019453.1 194337659 6462165 2761487..2762830 1 NC_011060.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pvi:Cvib_1603 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 2762830 6462165 Ppha_2677 Pelodictyon phaeoclathratiforme BU-1 acetyl-CoA carboxylase, biotin carboxylase YP_002019453.1 2761487 D 324925 CDS YP_002019454.1 194337660 6462238 complement(2762894..2767387) 1 NC_011060.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 2767387 6462238 Ppha_2678 Pelodictyon phaeoclathratiforme BU-1 DNA-directed RNA polymerase subunit beta' YP_002019454.1 2762894 R 324925 CDS YP_002019455.1 194337661 6462119 complement(2767457..2771368) 1 NC_011060.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 2771368 rpoB 6462119 rpoB Pelodictyon phaeoclathratiforme BU-1 DNA-directed RNA polymerase subunit beta YP_002019455.1 2767457 R 324925 CDS YP_002019456.1 194337662 6462112 complement(2771581..2771955) 1 NC_011060.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 2771955 rplL 6462112 rplL Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L7/L12 YP_002019456.1 2771581 R 324925 CDS YP_002019457.1 194337663 6461077 complement(2772023..2772541) 1 NC_011060.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 2772541 rplJ 6461077 rplJ Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L10 YP_002019457.1 2772023 R 324925 CDS YP_002019458.1 194337664 6462258 complement(2772559..2773248) 1 NC_011060.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 2773248 rplA 6462258 rplA Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L1 YP_002019458.1 2772559 R 324925 CDS YP_002019459.1 194337665 6462254 complement(2773325..2773750) 1 NC_011060.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 2773750 rplK 6462254 rplK Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L11 YP_002019459.1 2773325 R 324925 CDS YP_002019460.1 194337666 6462251 complement(2773792..2774367) 1 NC_011060.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cph:Cpha266_0228 transcription antitermination protein NusG; NusG antitermination factor 2774367 6462251 Ppha_2684 Pelodictyon phaeoclathratiforme BU-1 NusG antitermination factor YP_002019460.1 2773792 R 324925 CDS YP_002019461.1 194337667 6462244 complement(2774391..2774582) 1 NC_011060.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 2774582 secE 6462244 secE Pelodictyon phaeoclathratiforme BU-1 preprotein translocase subunit SecE YP_002019461.1 2774391 R 324925 CDS YP_002019462.1 194337668 6462442 complement(2775057..2775833) 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_0226 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2775833 6462442 Ppha_2686 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002019462.1 2775057 R 324925 CDS YP_002019463.1 194337669 6462462 complement(2775818..2777884) 1 NC_011060.1 KEGG: cch:Cag_0349 IspG protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2777884 6462462 Ppha_2687 Pelodictyon phaeoclathratiforme BU-1 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_002019463.1 2775818 R 324925 CDS YP_002019464.1 194337670 6462435 complement(2777913..2778251) 1 NC_011060.1 PFAM: Septum formation initiator; KEGG: plt:Plut_1971 hypothetical protein; septum formation initiator 2778251 6462435 Ppha_2688 Pelodictyon phaeoclathratiforme BU-1 septum formation initiator YP_002019464.1 2777913 R 324925 CDS YP_002019465.1 194337671 6462513 complement(2778324..2779637) 1 NC_011060.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 2779637 eno 6462513 eno Pelodictyon phaeoclathratiforme BU-1 phosphopyruvate hydratase YP_002019465.1 2778324 R 324925 CDS YP_002019466.1 194337672 6462507 2779863..2781938 1 NC_011060.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2781938 6462507 Ppha_2690 Pelodictyon phaeoclathratiforme BU-1 elongation factor G YP_002019466.1 2779863 D 324925 CDS YP_002019467.1 194337673 6462501 complement(2782032..2782820) 1 NC_011060.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0221 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase 2782820 6462501 Ppha_2691 Pelodictyon phaeoclathratiforme BU-1 dolichyl-phosphate beta-D-mannosyltransferase YP_002019467.1 2782032 R 324925 CDS YP_002019468.1 194337674 6461656 complement(2782903..2783592) 1 NC_011060.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0344 photosystem P840 reaction center iron-sulfur protein; 4Fe-4S ferredoxin 2783592 6461656 Ppha_2692 Pelodictyon phaeoclathratiforme BU-1 4Fe-4S ferredoxin YP_002019468.1 2782903 R 324925 CDS YP_002019469.1 194337675 6462150 complement(2783686..2785881) 1 NC_011060.1 KEGG: cch:Cag_0343 photosystem P840 reaction center, large subunit; photosystem P840 reaction center, large subunit 2785881 6462150 Ppha_2693 Pelodictyon phaeoclathratiforme BU-1 photosystem P840 reaction center, large subunit YP_002019469.1 2783686 R 324925 CDS YP_002019470.1 194337676 6462478 2786297..2787103 1 NC_011060.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2787103 dapF 6462478 dapF Pelodictyon phaeoclathratiforme BU-1 diaminopimelate epimerase YP_002019470.1 2786297 D 324925 CDS YP_002019471.1 194337677 6462560 2787658..2788374 1 NC_011060.1 KEGG: mem:Memar_0122 hypothetical protein; hypothetical protein 2788374 6462560 Ppha_2696 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019471.1 2787658 D 324925 CDS YP_002019472.1 194337678 6462542 2788398..2789375 1 NC_011060.1 KEGG: mba:Mbar_A2064 hypothetical protein; hypothetical protein 2789375 6462542 Ppha_2697 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019472.1 2788398 D 324925 CDS YP_002019473.1 194337679 6462535 complement(2789503..2789805) 1 NC_011060.1 KEGG: cch:Cag_0608 hypothetical protein; hypothetical protein 2789805 6462535 Ppha_2698 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019473.1 2789503 R 324925 CDS YP_002019474.1 194337680 6462072 2789960..2790118 1 NC_011060.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pvi:Cvib_1621 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2790118 6462072 Ppha_2699 Pelodictyon phaeoclathratiforme BU-1 rubredoxin-type Fe(Cys)4 protein YP_002019474.1 2789960 D 324925 CDS YP_002019475.1 194337681 6462566 complement(2790167..2791072) 1 NC_011060.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: cch:Cag_0146 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 2791072 6462566 Ppha_2700 Pelodictyon phaeoclathratiforme BU-1 monofunctional biosynthetic peptidoglycan transglycosylase YP_002019475.1 2790167 R 324925 CDS YP_002019476.1 194337682 6462617 complement(2791270..2793150) 1 NC_011060.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cch:Cag_0145 DNA mismatch repair protein; DNA mismatch repair protein MutL 2793150 6462617 Ppha_2701 Pelodictyon phaeoclathratiforme BU-1 DNA mismatch repair protein MutL YP_002019476.1 2791270 R 324925 CDS YP_002019477.1 194337683 6462703 complement(2793295..2794551) 1 NC_011060.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cph:Cpha266_2541 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA 2794551 6462703 Ppha_2702 Pelodictyon phaeoclathratiforme BU-1 competence/damage-inducible protein CinA YP_002019477.1 2793295 R 324925 CDS YP_002019478.1 194337684 6462562 complement(2794564..2797035) 1 NC_011060.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 2797035 thrA 6462562 thrA Pelodictyon phaeoclathratiforme BU-1 bifunctional aspartokinase I/homoserine dehydrogenase I YP_002019478.1 2794564 R 324925 CDS YP_002019479.1 194337685 6462590 complement(2797201..2798076) 1 NC_011060.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 2798076 6462590 Ppha_2704 Pelodictyon phaeoclathratiforme BU-1 F0F1 ATP synthase subunit gamma YP_002019479.1 2797201 R 324925 CDS YP_002019480.1 194337686 6462597 complement(2798125..2799705) 1 NC_011060.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2799705 6462597 Ppha_2705 Pelodictyon phaeoclathratiforme BU-1 F0F1 ATP synthase subunit alpha YP_002019480.1 2798125 R 324925 CDS YP_002019481.1 194337687 6462151 2799927..2800889 1 NC_011060.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2800889 6462151 Ppha_2706 Pelodictyon phaeoclathratiforme BU-1 homoserine kinase YP_002019481.1 2799927 D 324925 CDS YP_002019482.1 194337688 6462620 2800917..2802233 1 NC_011060.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2802233 6462620 Ppha_2707 Pelodictyon phaeoclathratiforme BU-1 threonine synthase YP_002019482.1 2800917 D 324925 CDS YP_002019483.1 194337689 6462619 2802252..2802962 1 NC_011060.1 KEGG: cph:Cpha266_2547 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2802962 6462619 Ppha_2708 Pelodictyon phaeoclathratiforme BU-1 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_002019483.1 2802252 D 324925 CDS YP_002019484.1 194337690 6462618 complement(2802959..2803426) 1 NC_011060.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2803426 ribH 6462618 ribH Pelodictyon phaeoclathratiforme BU-1 6,7-dimethyl-8-ribityllumazine synthase YP_002019484.1 2802959 R 324925 CDS YP_002019485.1 194337691 6462616 complement(2803451..2804086) 1 NC_011060.1 TIGRFAM: phosphoheptose isomerase; KEGG: cph:Cpha266_2549 phosphoheptose isomerase; phosphoheptose isomerase 2804086 6462616 Ppha_2710 Pelodictyon phaeoclathratiforme BU-1 phosphoheptose isomerase YP_002019485.1 2803451 R 324925 CDS YP_002019486.1 194337692 6462629 complement(2804209..2804637) 1 NC_011060.1 KEGG: cch:Cag_1797 hypothetical protein; hypothetical protein 2804637 6462629 Ppha_2711 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019486.1 2804209 R 324925 CDS YP_002019487.1 194337693 6462602 complement(2804643..2805047) 1 NC_011060.1 PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1798 transcriptional regulator, XRE family; XRE family transcriptional regulator 2805047 6462602 Ppha_2712 Pelodictyon phaeoclathratiforme BU-1 XRE family transcriptional regulator YP_002019487.1 2804643 R 324925 CDS YP_002019488.1 194337694 6462155 complement(2805062..2805541) 1 NC_011060.1 KEGG: cch:Cag_1799 hypothetical protein; hypothetical protein 2805541 6462155 Ppha_2713 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019488.1 2805062 R 324925 CDS YP_002019489.1 194337695 6462633 complement(2805783..2806838) 1 NC_011060.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 2806838 hemE 6462633 hemE Pelodictyon phaeoclathratiforme BU-1 uroporphyrinogen decarboxylase YP_002019489.1 2805783 R 324925 CDS YP_002019490.1 194337696 6462631 complement(2806982..2807830) 1 NC_011060.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cch:Cag_0129 succinate/fumarate oxidoreductase; CoB--CoM heterodisulfide reductase 2807830 6462631 Ppha_2715 Pelodictyon phaeoclathratiforme BU-1 CoB--CoM heterodisulfide reductase YP_002019490.1 2806982 R 324925 CDS YP_002019491.1 194337697 6462627 complement(2807848..2808882) 1 NC_011060.1 KEGG: cch:Cag_0128 succinate dehydrogenase/fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein 2808882 6462627 Ppha_2716 Pelodictyon phaeoclathratiforme BU-1 succinate dehydrogenase and fumarate reductase iron-sulfur protein YP_002019491.1 2807848 R 324925 CDS YP_002019492.1 194337698 6462624 complement(2808894..2810597) 1 NC_011060.1 KEGG: cch:Cag_0127 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 2810597 6462624 Ppha_2717 Pelodictyon phaeoclathratiforme BU-1 succinate dehydrogenase or fumarate reductase, flavoprotein subunit YP_002019492.1 2808894 R 324925 CDS YP_002019493.1 194337699 6462636 complement(2810735..2811187) 1 NC_011060.1 PFAM: CBS domain containing protein; KEGG: cch:Cag_0126 CBS; signal-transduction protein with CBS domains 2811187 6462636 Ppha_2718 Pelodictyon phaeoclathratiforme BU-1 signal-transduction protein with CBS domains YP_002019493.1 2810735 R 324925 CDS YP_002019494.1 194337700 6462623 complement(2811202..2811351) 1 NC_011060.1 hypothetical protein 2811351 6462623 Ppha_2719 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019494.1 2811202 R 324925 CDS YP_002019495.1 194337701 6462640 complement(2811384..2812025) 1 NC_011060.1 PFAM: beta-lactamase domain protein; KEGG: cph:Cpha266_0179 beta-lactamase domain protein; beta-lactamase domain-containing protein 2812025 6462640 Ppha_2720 Pelodictyon phaeoclathratiforme BU-1 beta-lactamase domain-containing protein YP_002019495.1 2811384 R 324925 CDS YP_002019496.1 194337702 6462638 complement(2812040..2812348) 1 NC_011060.1 KEGG: cph:Cpha266_0180 hypothetical protein; hypothetical protein 2812348 6462638 Ppha_2721 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019496.1 2812040 R 324925 CDS YP_002019497.1 194337703 6462647 complement(2812362..2815574) 1 NC_011060.1 PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0181 acriflavin resistance protein; acriflavin resistance protein 2815574 6462647 Ppha_2722 Pelodictyon phaeoclathratiforme BU-1 acriflavin resistance protein YP_002019497.1 2812362 R 324925 CDS YP_002019498.1 194337704 6462637 complement(2815567..2815977) 1 NC_011060.1 KEGG: plt:Plut_2000 hypothetical protein; hypothetical protein 2815977 6462637 Ppha_2723 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019498.1 2815567 R 324925 CDS YP_002019499.1 194337705 6462634 complement(2816009..2817331) 1 NC_011060.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein; outer membrane efflux protein 2817331 6462634 Ppha_2724 Pelodictyon phaeoclathratiforme BU-1 outer membrane efflux protein YP_002019499.1 2816009 R 324925 CDS YP_002019500.1 194337706 6462651 complement(2817338..2817568) 1 NC_011060.1 PFAM: protein of unknown function DUF156; KEGG: pvi:Cvib_1645 hypothetical protein; hypothetical protein 2817568 6462651 Ppha_2725 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019500.1 2817338 R 324925 CDS YP_002019501.1 194337707 6462652 complement(2817704..2818327) 1 NC_011060.1 KEGG: cch:Cag_0120 hypothetical protein; hypothetical protein 2818327 6462652 Ppha_2726 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019501.1 2817704 R 324925 CDS YP_002019502.1 194337708 6462645 complement(2818417..2818653) 1 NC_011060.1 KEGG: cph:Cpha266_0190 hypothetical protein; hypothetical protein 2818653 6462645 Ppha_2727 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019502.1 2818417 R 324925 CDS YP_002019503.1 194337709 6462236 complement(2818733..2819092) 1 NC_011060.1 KEGG: cph:Cpha266_0191 hypothetical protein; hypothetical protein 2819092 6462236 Ppha_2728 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019503.1 2818733 R 324925 CDS YP_002019504.1 194337710 6462483 2819377..2819670 1 NC_011060.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2819670 6462483 Ppha_2729 Pelodictyon phaeoclathratiforme BU-1 transposase IS3/IS911 family protein YP_002019504.1 2819377 D 324925 CDS YP_002019505.1 194337711 6461201 2819667..2820593 1 NC_011060.1 PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 2820593 6461201 Ppha_2730 Pelodictyon phaeoclathratiforme BU-1 integrase catalytic subunit YP_002019505.1 2819667 D 324925 CDS YP_002019506.1 194337712 6462642 2820964..2822361 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0200 radical SAM protein; radical SAM protein 2822361 6462642 Ppha_2731 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002019506.1 2820964 D 324925 CDS YP_002019507.1 194337713 6462657 complement(2825336..2825713) 1 NC_011060.1 KEGG: cph:Cpha266_0185 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2825713 6462657 Ppha_2736 Pelodictyon phaeoclathratiforme BU-1 alpha/beta hydrolase fold protein YP_002019507.1 2825336 R 324925 CDS YP_002019508.1 194337714 6462672 complement(2825710..2826366) 1 NC_011060.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: cph:Cpha266_0186 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 2826366 6462672 Ppha_2737 Pelodictyon phaeoclathratiforme BU-1 isoprenylcysteine carboxyl methyltransferase YP_002019508.1 2825710 R 324925 CDS YP_002019509.1 194337715 6462715 2826690..2827313 1 NC_011060.1 KEGG: cph:Cpha266_0187 hypothetical protein; hypothetical protein 2827313 6462715 Ppha_2738 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019509.1 2826690 D 324925 CDS YP_002019510.1 194337716 6462586 2827565..2828740 1 NC_011060.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: cph:Cpha266_0188 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein 2828740 6462586 Ppha_2739 Pelodictyon phaeoclathratiforme BU-1 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein YP_002019510.1 2827565 D 324925 CDS YP_002019511.1 194337717 6463598 2828761..2829534 1 NC_011060.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_0189 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2829534 6463598 Ppha_2740 Pelodictyon phaeoclathratiforme BU-1 short-chain dehydrogenase/reductase SDR YP_002019511.1 2828761 D 324925 CDS YP_002019512.1 194337718 6462666 complement(2829708..2829932) 1 NC_011060.1 KEGG: cph:Cpha266_0190 hypothetical protein; hypothetical protein 2829932 6462666 Ppha_2741 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019512.1 2829708 R 324925 CDS YP_002019513.1 194337719 6462660 complement(2829971..2830336) 1 NC_011060.1 KEGG: cph:Cpha266_0191 hypothetical protein; hypothetical protein 2830336 6462660 Ppha_2742 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019513.1 2829971 R 324925 CDS YP_002019514.1 194337720 6462662 complement(2830367..2831908) 1 NC_011060.1 KEGG: cph:Cpha266_0192 hypothetical protein; hypothetical protein 2831908 6462662 Ppha_2743 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019514.1 2830367 R 324925 CDS YP_002019515.1 194337721 6462648 2832098..2832319 1 NC_011060.1 KEGG: cph:Cpha266_0193 hypothetical protein; hypothetical protein 2832319 6462648 Ppha_2744 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019515.1 2832098 D 324925 CDS YP_002019516.1 194337722 6462635 complement(2832347..2833228) 1 NC_011060.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cph:Cpha266_0194 aldolase; aldolase 2833228 6462635 Ppha_2745 Pelodictyon phaeoclathratiforme BU-1 aldolase YP_002019516.1 2832347 R 324925 CDS YP_002019517.1 194337723 6462632 complement(2833293..2835410) 1 NC_011060.1 PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_0195 short chain dehydrogenase; short chain dehydrogenase 2835410 6462632 Ppha_2746 Pelodictyon phaeoclathratiforme BU-1 short chain dehydrogenase YP_002019517.1 2833293 R 324925 CDS YP_002019518.1 194337724 6462626 complement(2835539..2836744) 1 NC_011060.1 KEGG: cph:Cpha266_0196 hypothetical protein; hypothetical protein 2836744 6462626 Ppha_2747 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019518.1 2835539 R 324925 CDS YP_002019519.1 194337725 6462541 complement(2836996..2837229) 1 NC_011060.1 KEGG: pvi:Cvib_0371 hypothetical protein; hypothetical protein 2837229 6462541 Ppha_2748 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019519.1 2836996 R 324925 CDS YP_002019520.1 194337726 6462094 complement(2837346..2837816) 1 NC_011060.1 TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cph:Cpha266_0198 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD 2837816 6462094 Ppha_2749 Pelodictyon phaeoclathratiforme BU-1 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD YP_002019520.1 2837346 R 324925 CDS YP_002019521.1 194337727 6462467 2839117..2840136 1 NC_011060.1 TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cch:Cag_0115 CrtF-related protein; C-20 methyltransferase BchU 2840136 6462467 Ppha_2752 Pelodictyon phaeoclathratiforme BU-1 C-20 methyltransferase BchU YP_002019521.1 2839117 D 324925 CDS YP_002019522.1 194337728 6462458 2840288..2840503 1 NC_011060.1 KEGG: cph:Cpha266_0202 chlorosome envelope protein B; chlorosome envelope protein B 2840503 6462458 Ppha_2753 Pelodictyon phaeoclathratiforme BU-1 chlorosome envelope protein B YP_002019522.1 2840288 D 324925 CDS YP_002019523.1 194337729 6462404 complement(2840736..2841362) 1 NC_011060.1 PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: cch:Cag_0119 hypothetical protein; proto-chlorophyllide reductase 57 kD subunit 2841362 6462404 Ppha_2754 Pelodictyon phaeoclathratiforme BU-1 proto-chlorophyllide reductase 57 kD subunit YP_002019523.1 2840736 R 324925 CDS YP_002019524.1 194337730 6462376 complement(2841783..2841995) 1 NC_011060.1 KEGG: plt:Plut_0810 hypothetical protein; hypothetical protein 2841995 6462376 Ppha_2755 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019524.1 2841783 R 324925 CDS YP_002019525.1 194337731 6462141 2842487..2843710 1 NC_011060.1 KEGG: cph:Cpha266_2301 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2843710 6462141 Ppha_2756 Pelodictyon phaeoclathratiforme BU-1 arsenite-activated ATPase ArsA YP_002019525.1 2842487 D 324925 CDS YP_002019526.1 194337732 6462109 2843768..2845156 1 NC_011060.1 PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB; radical SAM protein 2845156 6462109 Ppha_2757 Pelodictyon phaeoclathratiforme BU-1 radical SAM protein YP_002019526.1 2843768 D 324925 CDS YP_002019527.1 194337733 6461913 2845360..2846379 1 NC_011060.1 TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cch:Cag_0115 CrtF-related protein; C-20 methyltransferase BchU 2846379 6461913 Ppha_2758 Pelodictyon phaeoclathratiforme BU-1 C-20 methyltransferase BchU YP_002019527.1 2845360 D 324925 CDS YP_002019528.1 194337734 6461726 2846630..2846857 1 NC_011060.1 KEGG: plt:Plut_2005 chlorosome envelope protein B; chlorosome envelope protein B 2846857 6461726 Ppha_2759 Pelodictyon phaeoclathratiforme BU-1 chlorosome envelope protein B YP_002019528.1 2846630 D 324925 CDS YP_002019529.1 194337735 6461552 2846943..2847947 1 NC_011060.1 PFAM: aminoglycoside phosphotransferase; KEGG: cph:Cpha266_0203 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2847947 6461552 Ppha_2760 Pelodictyon phaeoclathratiforme BU-1 aminoglycoside phosphotransferase YP_002019529.1 2846943 D 324925 CDS YP_002019530.1 194337736 6461428 2847944..2848906 1 NC_011060.1 PFAM: Nucleotidyl transferase; KEGG: cch:Cag_0193 mannose-1-phosphate guanylyltransferase; nucleotidyl transferase 2848906 6461428 Ppha_2761 Pelodictyon phaeoclathratiforme BU-1 nucleotidyl transferase YP_002019530.1 2847944 D 324925 CDS YP_002019531.1 194337737 6461414 2848900..2850066 1 NC_011060.1 PFAM: conserved hypothetical protein; KEGG: cch:Cag_0194 hypothetical protein; hypothetical protein 2850066 6461414 Ppha_2762 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019531.1 2848900 D 324925 CDS YP_002019532.1 194337738 6461287 2850136..2851554 1 NC_011060.1 PFAM: Na+/solute symporter; KEGG: cph:Cpha266_0206 Na+/solute symporter; Na+/solute symporter 2851554 6461287 Ppha_2763 Pelodictyon phaeoclathratiforme BU-1 Na+/solute symporter YP_002019532.1 2850136 D 324925 CDS YP_002019533.1 194337739 6461079 2851840..2855667 1 NC_011060.1 KEGG: plt:Plut_2011 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 2855667 6461079 Ppha_2764 Pelodictyon phaeoclathratiforme BU-1 multi-sensor hybrid histidine kinase YP_002019533.1 2851840 D 324925 CDS YP_002019534.1 194337740 6461066 2855679..2856038 1 NC_011060.1 PFAM: response regulator receiver; KEGG: cph:Cpha266_1786 response regulator receiver protein; response regulator receiver protein 2856038 6461066 Ppha_2765 Pelodictyon phaeoclathratiforme BU-1 response regulator receiver protein YP_002019534.1 2855679 D 324925 CDS YP_002019535.1 194337741 6461035 complement(2856076..2856777) 1 NC_011060.1 PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cch:Cag_1729 hypothetical protein; NmrA family protein 2856777 6461035 Ppha_2766 Pelodictyon phaeoclathratiforme BU-1 NmrA family protein YP_002019535.1 2856076 R 324925 CDS YP_002019536.1 194337742 6460913 2856937..2858163 1 NC_011060.1 PFAM: pentapeptide repeat protein; KEGG: plt:Plut_2015 pentapeptide repeat family protein; pentapeptide repeat-containing protein 2858163 6460913 Ppha_2767 Pelodictyon phaeoclathratiforme BU-1 pentapeptide repeat-containing protein YP_002019536.1 2856937 D 324925 CDS YP_002019537.1 194337743 6460908 complement(2858228..2858506) 1 NC_011060.1 KEGG: cph:Cpha266_0211 hypothetical protein; hypothetical protein 2858506 6460908 Ppha_2768 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019537.1 2858228 R 324925 CDS YP_002019538.1 194337744 6461528 complement(2858666..2859316) 1 NC_011060.1 KEGG: plt:Plut_2017 hypothetical protein; hypothetical protein 2859316 6461528 Ppha_2769 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019538.1 2858666 R 324925 CDS YP_002019539.1 194337745 6462336 complement(2859483..2860250) 1 NC_011060.1 PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_1776 integral membrane protein TerC; integral membrane protein TerC 2860250 6462336 Ppha_2770 Pelodictyon phaeoclathratiforme BU-1 integral membrane protein TerC YP_002019539.1 2859483 R 324925 CDS YP_002019540.1 194337746 6461992 complement(2860316..2862229) 1 NC_011060.1 PFAM: K potassium transporter; KEGG: cph:Cpha266_1777 K+ potassium transporter; K potassium transporter 2862229 6461992 Ppha_2771 Pelodictyon phaeoclathratiforme BU-1 K potassium transporter YP_002019540.1 2860316 R 324925 CDS YP_002019541.1 194337747 6461211 2862718..2863233 1 NC_011060.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cph:Cpha266_0215 rare lipoprotein A; rare lipoprotein A 2863233 6461211 Ppha_2772 Pelodictyon phaeoclathratiforme BU-1 rare lipoprotein A YP_002019541.1 2862718 D 324925 CDS YP_002019542.1 194337748 6462691 complement(2863457..2865355) 1 NC_011060.1 PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: cte:CT1075 thiol:disulfide interchange protein DsbD; Protein-disulfide reductase 2865355 6462691 Ppha_2773 Pelodictyon phaeoclathratiforme BU-1 Protein-disulfide reductase YP_002019542.1 2863457 R 324925 CDS YP_002019543.1 194337749 6463830 2866936..2868174 1 NC_011060.1 KEGG: cph:Cpha266_1807 hypothetical protein; hypothetical protein 2868174 6463830 Ppha_2775 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019543.1 2866936 D 324925 CDS YP_002019544.1 194337750 6462392 2868171..2868968 1 NC_011060.1 PFAM: cytochrome c assembly protein; KEGG: cch:Cag_1681 cytochrome c biogenesis protein; cytochrome c assembly protein 2868968 6462392 Ppha_2776 Pelodictyon phaeoclathratiforme BU-1 cytochrome c assembly protein YP_002019544.1 2868171 D 324925 CDS YP_002019545.1 194337751 6462581 complement(2869090..2869494) 1 NC_011060.1 PFAM: PilT protein domain protein; KEGG: cch:Cag_1325 nucleic acid-binding protein,contains PIN domain; PilT protein domain-containing protein 2869494 6462581 Ppha_2777 Pelodictyon phaeoclathratiforme BU-1 PilT protein domain-containing protein YP_002019545.1 2869090 R 324925 CDS YP_002019546.1 194337752 6461517 complement(2869494..2869727) 1 NC_011060.1 PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1324 hypothetical protein; SpoVT/AbrB domain-containing protein 2869727 6461517 Ppha_2778 Pelodictyon phaeoclathratiforme BU-1 SpoVT/AbrB domain-containing protein YP_002019546.1 2869494 R 324925 CDS YP_002019547.1 194337753 6462323 complement(2869802..2871223) 1 NC_011060.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 2871223 trmE 6462323 trmE Pelodictyon phaeoclathratiforme BU-1 tRNA modification GTPase TrmE YP_002019547.1 2869802 R 324925 CDS YP_002019548.1 194337754 6462521 2871360..2872169 1 NC_011060.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 2872169 mazG 6462521 mazG Pelodictyon phaeoclathratiforme BU-1 nucleoside triphosphate pyrophosphohydrolase YP_002019548.1 2871360 D 324925 CDS YP_002019549.1 194337755 6461848 complement(2872173..2872838) 1 NC_011060.1 KEGG: cph:Cpha266_2535 phospholipase/carboxylesterase; phospholipase/carboxylesterase 2872838 6461848 Ppha_2781 Pelodictyon phaeoclathratiforme BU-1 phospholipase/carboxylesterase YP_002019549.1 2872173 R 324925 CDS YP_002019550.1 194337756 6462058 complement(2872902..2876198) 1 NC_011060.1 KEGG: pvi:Cvib_1672 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase 2876198 6462058 Ppha_2782 Pelodictyon phaeoclathratiforme BU-1 trehalose synthase YP_002019550.1 2872902 R 324925 CDS YP_002019551.1 194337757 6461903 complement(2876249..2878261) 1 NC_011060.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cch:Cag_1984 alpha amylase, catalytic subdomain; alpha amylase catalytic protein 2878261 6461903 Ppha_2783 Pelodictyon phaeoclathratiforme BU-1 alpha amylase catalytic protein YP_002019551.1 2876249 R 324925 CDS YP_002019552.1 194337758 6461885 2878474..2879565 1 NC_011060.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: plt:Plut_2031 peptide chain release factor 2; peptide chain release factor 2 2879565 6461885 Ppha_2784 Pelodictyon phaeoclathratiforme BU-1 peptide chain release factor 2 YP_002019552.1 2878474 D 324925 CDS YP_002019553.1 194337759 6461017 2879565..2880410 1 NC_011060.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2539 hypothetical protein; metallophosphoesterase 2880410 6461017 Ppha_2785 Pelodictyon phaeoclathratiforme BU-1 metallophosphoesterase YP_002019553.1 2879565 D 324925 CDS YP_002019554.1 194337760 6462446 complement(2880427..2880702) 1 NC_011060.1 KEGG: ppd:Ppro_0176 hypothetical protein; hypothetical protein 2880702 6462446 Ppha_2786 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019554.1 2880427 R 324925 CDS YP_002019555.1 194337761 6462622 complement(2880761..2881579) 1 NC_011060.1 PFAM: DNA/RNA non-specific endonuclease; KEGG: bvi:Bcep1808_6848 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease 2881579 6462622 Ppha_2787 Pelodictyon phaeoclathratiforme BU-1 DNA/RNA non-specific endonuclease YP_002019555.1 2880761 R 324925 CDS YP_002019556.1 194337762 6461896 complement(2881783..2882238) 1 NC_011060.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 2882238 mscL 6461896 mscL Pelodictyon phaeoclathratiforme BU-1 large-conductance mechanosensitive channel YP_002019556.1 2881783 R 324925 CDS YP_002019557.1 194337763 6461541 complement(2882353..2883639) 1 NC_011060.1 PFAM: Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; aminotransferase class-III; KEGG: csc:Csac_1225 glycine C-acetyltransferase; Glycine C-acetyltransferase 2883639 6461541 Ppha_2789 Pelodictyon phaeoclathratiforme BU-1 Glycine C-acetyltransferase YP_002019557.1 2882353 R 324925 CDS YP_002019558.1 194337764 6462117 complement(2883853..2884275) 1 NC_011060.1 KEGG: cch:Cag_0810 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase 2884275 6462117 Ppha_2790 Pelodictyon phaeoclathratiforme BU-1 DEAD/DEAH box helicase YP_002019558.1 2883853 R 324925 CDS YP_002019559.1 194337765 6461599 complement(2884317..2884799) 1 NC_011060.1 KEGG: bpd:BURPS668_3905 hypothetical protein; hypothetical protein 2884799 6461599 Ppha_2791 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019559.1 2884317 R 324925 CDS YP_002019560.1 194337766 6462548 complement(2884786..2885934) 1 NC_011060.1 PFAM: protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: bpd:BURPS668_3906 hypothetical protein; hypothetical protein 2885934 6462548 Ppha_2792 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019560.1 2884786 R 324925 CDS YP_002019561.1 194337767 6461137 complement(2886418..2886615) 1 NC_011060.1 KEGG: cph:Cpha266_1948 hypothetical protein; hypothetical protein 2886615 6461137 Ppha_2794 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019561.1 2886418 R 324925 CDS YP_002019562.1 194337768 6461391 complement(2886981..2888090) 1 NC_011060.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cph:Cpha266_2553 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2888090 6461391 Ppha_2796 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylglucosamine 2-epimerase YP_002019562.1 2886981 R 324925 CDS YP_002019563.1 194337769 6461467 2888147..2889097 1 NC_011060.1 KEGG: cph:Cpha266_2554 hypothetical protein; hypothetical protein 2889097 6461467 Ppha_2797 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019563.1 2888147 D 324925 CDS YP_002019564.1 194337770 6461420 complement(2889143..2889409) 1 NC_011060.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: cch:Cag_1970 hypothetical protein; FmdB family regulatory protein 2889409 6461420 Ppha_2798 Pelodictyon phaeoclathratiforme BU-1 FmdB family regulatory protein YP_002019564.1 2889143 R 324925 CDS YP_002019565.1 194337771 6462440 2889550..2890335 1 NC_011060.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: cch:Cag_1969 recombination protein O, RecO; DNA repair protein RecO 2890335 6462440 Ppha_2799 Pelodictyon phaeoclathratiforme BU-1 DNA repair protein RecO YP_002019565.1 2889550 D 324925 CDS YP_002019566.1 194337772 6461159 2890447..2891742 1 NC_011060.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2891742 6461159 Ppha_2800 Pelodictyon phaeoclathratiforme BU-1 glutamate-1-semialdehyde aminotransferase YP_002019566.1 2890447 D 324925 CDS YP_002019567.1 194337773 6461052 complement(2891797..2892132) 1 NC_011060.1 PFAM: protein of unknown function DUF190; KEGG: plt:Plut_2039 hypothetical protein; hypothetical protein 2892132 6461052 Ppha_2801 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019567.1 2891797 R 324925 CDS YP_002019568.1 194337774 6462433 complement(2892145..2892528) 1 NC_011060.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2892528 6462433 Ppha_2802 Pelodictyon phaeoclathratiforme BU-1 camphor resistance protein CrcB YP_002019568.1 2892145 R 324925 CDS YP_002019569.1 194337775 6462459 complement(2892573..2892803) 1 NC_011060.1 KEGG: cch:Cag_0013 hypothetical protein; hypothetical protein 2892803 6462459 Ppha_2803 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019569.1 2892573 R 324925 CDS YP_002019570.1 194337776 6462340 complement(2892902..2893522) 1 NC_011060.1 PFAM: SOUL heme-binding protein; KEGG: cph:Cpha266_2566 SOUL heme-binding protein; SOUL heme-binding protein 2893522 6462340 Ppha_2804 Pelodictyon phaeoclathratiforme BU-1 SOUL heme-binding protein YP_002019570.1 2892902 R 324925 CDS YP_002019571.1 194337777 6462441 2893778..2894215 1 NC_011060.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cch:Cag_0014 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 2894215 6462441 Ppha_2805 Pelodictyon phaeoclathratiforme BU-1 Holliday junction resolvase YqgF YP_002019571.1 2893778 D 324925 CDS YP_002019572.1 194337778 6461644 2894326..2894892 1 NC_011060.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2894892 pyrE 6461644 pyrE Pelodictyon phaeoclathratiforme BU-1 orotate phosphoribosyltransferase YP_002019572.1 2894326 D 324925 CDS YP_002019573.1 194337779 6461508 2894897..2895766 1 NC_011060.1 PFAM: Prephenate dehydrogenase; KEGG: cph:Cpha266_2572 prephenate dehydrogenase; prephenate dehydrogenase 2895766 6461508 Ppha_2807 Pelodictyon phaeoclathratiforme BU-1 prephenate dehydrogenase YP_002019573.1 2894897 D 324925 CDS YP_002019574.1 194337780 6461727 2895763..2896629 1 NC_011060.1 PFAM: ATP-NAD/AcoX kinase; KEGG: plt:Plut_2050 NAD(+) kinase; ATP-NAD/AcoX kinase 2896629 6461727 Ppha_2808 Pelodictyon phaeoclathratiforme BU-1 ATP-NAD/AcoX kinase YP_002019574.1 2895763 D 324925 CDS YP_002019575.1 194337781 6461923 2896690..2898168 1 NC_011060.1 KEGG: cph:Cpha266_2574 hypothetical protein; hypothetical protein 2898168 6461923 Ppha_2809 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019575.1 2896690 D 324925 CDS YP_002019576.1 194337782 6462491 complement(2898173..2898724) 1 NC_011060.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cch:Cag_1975 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2898724 6462491 Ppha_2810 Pelodictyon phaeoclathratiforme BU-1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_002019576.1 2898173 R 324925 CDS YP_002019577.1 194337783 6463819 complement(2898763..2899593) 1 NC_011060.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 2899593 6463819 Ppha_2811 Pelodictyon phaeoclathratiforme BU-1 2-dehydro-3-deoxyphosphooctonate aldolase YP_002019577.1 2898763 R 324925 CDS YP_002019578.1 194337784 6460859 2899715..2901037 1 NC_011060.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2577 ATPase AAA-2 domain protein; ATPase AAA-2 domain-containing protein 2901037 6460859 Ppha_2812 Pelodictyon phaeoclathratiforme BU-1 ATPase AAA-2 domain-containing protein YP_002019578.1 2899715 D 324925 CDS YP_002019579.1 194337785 6460870 2901106..2902233 1 NC_011060.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2578 glycoside hydrolase, family 3 domain protein; beta-N-acetylhexosaminidase 2902233 6460870 Ppha_2813 Pelodictyon phaeoclathratiforme BU-1 beta-N-acetylhexosaminidase YP_002019579.1 2901106 D 324925 CDS YP_002019580.1 194337786 6460878 2902230..2902724 1 NC_011060.1 PFAM: Phosphoglycerate mutase; KEGG: cph:Cpha266_2579 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA 2902724 6460878 Ppha_2814 Pelodictyon phaeoclathratiforme BU-1 phosphohistidine phosphatase SixA YP_002019580.1 2902230 D 324925 CDS YP_002019581.1 194337787 6460874 complement(2902729..2903730) 1 NC_011060.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2903730 gpsA 6460874 gpsA Pelodictyon phaeoclathratiforme BU-1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002019581.1 2902729 R 324925 CDS YP_002019582.1 194337788 6460887 complement(2903747..2904454) 1 NC_011060.1 PFAM: protein of unknown function DUF205; KEGG: pvi:Cvib_1700 acyl-phosphate glycerol-3-phosphate acyltransferase; membrane protein 2904454 6460887 Ppha_2816 Pelodictyon phaeoclathratiforme BU-1 membrane protein YP_002019582.1 2903747 R 324925 CDS YP_002019583.1 194337789 6463084 complement(2904475..2905467) 1 NC_011060.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 2905467 6463084 Ppha_2817 Pelodictyon phaeoclathratiforme BU-1 phosphoribosylaminoimidazole synthetase YP_002019583.1 2904475 R 324925 CDS YP_002019584.1 194337790 6463096 complement(2905537..2906952) 1 NC_011060.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III 2906952 6463096 Ppha_2818 Pelodictyon phaeoclathratiforme BU-1 aspartate kinase III YP_002019584.1 2905537 R 324925 CDS YP_002019585.1 194337791 6463110 2907211..2907690 1 NC_011060.1 PFAM: NLP/P60 protein; KEGG: cph:Cpha266_2584 NLP/P60 protein; NLP/P60 protein 2907690 6463110 Ppha_2819 Pelodictyon phaeoclathratiforme BU-1 NLP/P60 protein YP_002019585.1 2907211 D 324925 CDS YP_002019586.1 194337792 6460892 2907795..2908661 1 NC_011060.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 2908661 prmA 6460892 prmA Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L11 methyltransferase YP_002019586.1 2907795 D 324925 CDS YP_002019587.1 194337793 6460911 2908658..2909596 1 NC_011060.1 PFAM: Ppx/GppA phosphatase; KEGG: cch:Cag_2019 exopolyphosphatase; Ppx/GppA phosphatase 2909596 6460911 Ppha_2821 Pelodictyon phaeoclathratiforme BU-1 Ppx/GppA phosphatase YP_002019587.1 2908658 D 324925 CDS YP_002019588.1 194337794 6460898 complement(2909529..2910791) 1 NC_011060.1 KEGG: cph:Cpha266_2587 hypothetical protein; hypothetical protein 2910791 6460898 Ppha_2822 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019588.1 2909529 R 324925 CDS YP_002019589.1 194337795 6460921 complement(2910860..2911753) 1 NC_011060.1 KEGG: vha:VIBHAR_p08196 hypothetical protein; hypothetical protein 2911753 6460921 Ppha_2823 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019589.1 2910860 R 324925 CDS YP_002019590.1 194337796 6460922 complement(2911908..2912387) 1 NC_011060.1 KEGG: mar:MAE_61600 predicted nucleic acid-binding protein; nucleic acid-binding protein 2912387 6460922 Ppha_2824 Pelodictyon phaeoclathratiforme BU-1 nucleic acid-binding protein YP_002019590.1 2911908 R 324925 CDS YP_002019591.1 194337797 6460928 complement(2912384..2912662) 1 NC_011060.1 KEGG: mar:MAE_46960 hypothetical protein; hypothetical protein 2912662 6460928 Ppha_2825 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019591.1 2912384 R 324925 CDS YP_002019592.1 194337798 6460943 2912960..2913241 1 NC_011060.1 KEGG: cph:Cpha266_1379 transcriptional regulator, CopG family; CopG family transcriptional regulator 2913241 6460943 Ppha_2826 Pelodictyon phaeoclathratiforme BU-1 CopG family transcriptional regulator YP_002019592.1 2912960 D 324925 CDS YP_002019593.1 194337799 6460958 complement(2913711..2915168) 1 NC_011060.1 KEGG: tex:Teth514_0739 ATPase (AAA+ superfamily)-like protein; ATPase -like protein 2915168 6460958 Ppha_2828 Pelodictyon phaeoclathratiforme BU-1 ATPase -like protein YP_002019593.1 2913711 R 324925 CDS YP_002019594.1 194337800 6460976 2915698..2915937 1 NC_011060.1 KEGG: cph:Cpha266_0070 helix-turn-helix protein, CopG family; helix-turn-helix protein, CopG family 2915937 6460976 Ppha_2830 Pelodictyon phaeoclathratiforme BU-1 helix-turn-helix protein, CopG family YP_002019594.1 2915698 D 324925 CDS YP_002019595.1 194337801 6461014 2916265..2918007 1 NC_011060.1 PFAM: SMC domain protein; KEGG: vei:Veis_4173 SMC domain protein; SMC domain-containing protein 2918007 6461014 Ppha_2832 Pelodictyon phaeoclathratiforme BU-1 SMC domain-containing protein YP_002019595.1 2916265 D 324925 CDS YP_002019596.1 194337802 6461008 complement(2918080..2919786) 1 NC_011060.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_2588 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2919786 6461008 Ppha_2833 Pelodictyon phaeoclathratiforme BU-1 AMP-dependent synthetase and ligase YP_002019596.1 2918080 R 324925 CDS YP_002019597.1 194337803 6461024 complement(2919853..2921145) 1 NC_011060.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cch:Cag_0083 adenosylmethionine--8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2921145 6461024 Ppha_2834 Pelodictyon phaeoclathratiforme BU-1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002019597.1 2919853 R 324925 CDS YP_002019598.1 194337804 6461059 complement(2921173..2921850) 1 NC_011060.1 TIGRFAM: dethiobiotin synthase; KEGG: cch:Cag_0082 dithiobiotin synthetase; dethiobiotin synthase 2921850 6461059 Ppha_2835 Pelodictyon phaeoclathratiforme BU-1 dethiobiotin synthase YP_002019598.1 2921173 R 324925 CDS YP_002019599.1 194337805 6461058 complement(2921847..2922629) 1 NC_011060.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_2067 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC 2922629 6461058 Ppha_2836 Pelodictyon phaeoclathratiforme BU-1 biotin biosynthesis protein BioC YP_002019599.1 2921847 R 324925 CDS YP_002019600.1 194337806 6461089 complement(2922617..2923306) 1 NC_011060.1 PFAM: protein of unknown function DUF452; KEGG: plt:Plut_2068 hypothetical protein; hypothetical protein 2923306 6461089 Ppha_2837 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019600.1 2922617 R 324925 CDS YP_002019601.1 194337807 6461097 complement(2923303..2924472) 1 NC_011060.1 PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: plt:Plut_2069 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 2924472 6461097 Ppha_2838 Pelodictyon phaeoclathratiforme BU-1 8-amino-7-oxononanoate synthase YP_002019601.1 2923303 R 324925 CDS YP_002019602.1 194337808 6461119 complement(2924487..2925500) 1 NC_011060.1 KEGG: pvi:Cvib_1711 biotin synthase; PFAM: radical SAM protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2925500 6461119 Ppha_2839 Pelodictyon phaeoclathratiforme BU-1 biotin synthase YP_002019602.1 2924487 R 324925 CDS YP_002019603.1 194337809 6461130 complement(2925517..2926503) 1 NC_011060.1 KEGG: cph:Cpha266_0111 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin--acetyl-CoA-carboxylase ligase 2926503 6461130 Ppha_2840 Pelodictyon phaeoclathratiforme BU-1 biotin--acetyl-CoA-carboxylase ligase YP_002019603.1 2925517 R 324925 CDS YP_002019604.1 194337810 6461162 complement(2926629..2928356) 1 NC_011060.1 PFAM: cell wall hydrolase/autolysin; KEGG: plt:Plut_2072 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 2928356 6461162 Ppha_2841 Pelodictyon phaeoclathratiforme BU-1 N-acetylmuramoyl-L-alanine amidase YP_002019604.1 2926629 R 324925 CDS YP_002019605.1 194337811 6461173 2928588..2930984 1 NC_011060.1 KEGG: cph:Cpha266_0109 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 2930984 6461173 Ppha_2842 Pelodictyon phaeoclathratiforme BU-1 DNA topoisomerase I YP_002019605.1 2928588 D 324925 CDS YP_002019606.1 194337812 6461197 complement(2930974..2933112) 1 NC_011060.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cph:Cpha266_0108 ferrous iron transport protein B; ferrous iron transport protein B 2933112 6461197 Ppha_2843 Pelodictyon phaeoclathratiforme BU-1 ferrous iron transport protein B YP_002019606.1 2930974 R 324925 CDS YP_002019607.1 194337813 6461208 complement(2933109..2933375) 1 NC_011060.1 PFAM: FeoA family protein; KEGG: plt:Plut_2075 ferrous iron transport protein A; FeoA family protein 2933375 6461208 Ppha_2844 Pelodictyon phaeoclathratiforme BU-1 FeoA family protein YP_002019607.1 2933109 R 324925 CDS YP_002019608.1 194337814 6461214 complement(2933478..2933858) 1 NC_011060.1 PFAM: histidine triad (HIT) protein; KEGG: pvi:Cvib_1717 histidine triad (HIT) protein; histidine triad (HIT) protein 2933858 6461214 Ppha_2845 Pelodictyon phaeoclathratiforme BU-1 histidine triad (HIT) protein YP_002019608.1 2933478 R 324925 CDS YP_002019609.1 194337815 6461240 complement(2934000..2935331) 1 NC_011060.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cph:Cpha266_0098 protein of unknown function DUF21; hypothetical protein 2935331 6461240 Ppha_2846 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019609.1 2934000 R 324925 CDS YP_002019610.1 194337816 6461235 complement(2935672..2936208) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 hypothetical protein; hypothetical protein 2936208 6461235 Ppha_2847 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019610.1 2935672 R 324925 CDS YP_002019611.1 194337817 6461249 complement(2936334..2938523) 1 NC_011060.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mag:amb0540 outer membrane receptor protein; TonB-dependent receptor 2938523 6461249 Ppha_2848 Pelodictyon phaeoclathratiforme BU-1 TonB-dependent receptor YP_002019611.1 2936334 R 324925 CDS YP_002019612.1 194337818 6461247 complement(2938714..2939100) 1 NC_011060.1 hypothetical protein 2939100 6461247 Ppha_2849 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019612.1 2938714 R 324925 CDS YP_002019613.1 194337819 6461263 complement(2939346..2939750) 1 NC_011060.1 KEGG: cch:Cag_1113 hypothetical protein; hypothetical protein 2939750 6461263 Ppha_2850 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019613.1 2939346 R 324925 CDS YP_002019614.1 194337820 6461268 complement(2940137..2940910) 1 NC_011060.1 PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_2080 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; succinate dehydrogenase/fumarate reductase iron-sulfur subunit 2940910 6461268 Ppha_2851 Pelodictyon phaeoclathratiforme BU-1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit YP_002019614.1 2940137 R 324925 CDS YP_002019615.1 194337821 6461280 complement(2940920..2942860) 1 NC_011060.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2942860 sdhA 6461280 sdhA Pelodictyon phaeoclathratiforme BU-1 succinate dehydrogenase flavoprotein subunit YP_002019615.1 2940920 R 324925 CDS YP_002019616.1 194337822 6461304 complement(2942919..2943581) 1 NC_011060.1 TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: cph:Cpha266_0102 succinate dehydrogenase subunit C; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 2943581 6461304 Ppha_2853 Pelodictyon phaeoclathratiforme BU-1 succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family YP_002019616.1 2942919 R 324925 CDS YP_002019617.1 194337823 6461303 complement(2943685..2944326) 1 NC_011060.1 PFAM: cyclase family protein; KEGG: cch:Cag_1936 hypothetical protein; cyclase family protein 2944326 6461303 Ppha_2854 Pelodictyon phaeoclathratiforme BU-1 cyclase family protein YP_002019617.1 2943685 R 324925 CDS YP_002019618.1 194337824 6461314 complement(2944326..2945246) 1 NC_011060.1 KEGG: plt:Plut_2086 lysophospholipase L2; Esterase/lipase-like protein 2945246 6461314 Ppha_2855 Pelodictyon phaeoclathratiforme BU-1 Esterase/lipase-like protein YP_002019618.1 2944326 R 324925 CDS YP_002019619.1 194337825 6461328 2945269..2945733 1 NC_011060.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pvi:Cvib_1727 rare lipoprotein A; rare lipoprotein A 2945733 6461328 Ppha_2856 Pelodictyon phaeoclathratiforme BU-1 rare lipoprotein A YP_002019619.1 2945269 D 324925 CDS YP_002019620.1 194337826 6461349 complement(2945738..2946631) 1 NC_011060.1 PFAM: protein of unknown function DUF89; KEGG: cph:Cpha266_1577 protein of unknown function DUF89; hypothetical protein 2946631 6461349 Ppha_2857 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019620.1 2945738 R 324925 CDS YP_002019621.1 194337827 6462518 complement(2946732..2947745) 1 NC_011060.1 PFAM: beta-lactamase domain protein; KEGG: pde:Pden_4160 SoxH protein-like; beta-lactamase domain-containing protein 2947745 6462518 Ppha_2858 Pelodictyon phaeoclathratiforme BU-1 beta-lactamase domain-containing protein YP_002019621.1 2946732 R 324925 CDS YP_002019622.1 194337828 6461360 complement(2947810..2948868) 1 NC_011060.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cph:Cpha266_0466 arsenical-resistance protein; arsenical-resistance protein 2948868 6461360 Ppha_2859 Pelodictyon phaeoclathratiforme BU-1 arsenical-resistance protein YP_002019622.1 2947810 R 324925 CDS YP_002019623.1 194337829 6462481 complement(2948873..2949262) 1 NC_011060.1 SMART: Rhodanese domain protein; KEGG: cph:Cpha266_0463 rhodanese domain protein; rhodanese domain-containing protein 2949262 6462481 Ppha_2860 Pelodictyon phaeoclathratiforme BU-1 rhodanese domain-containing protein YP_002019623.1 2948873 R 324925 CDS YP_002019624.1 194337830 6461370 complement(2949281..2949418) 1 NC_011060.1 hypothetical protein 2949418 6461370 Ppha_2861 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019624.1 2949281 R 324925 CDS YP_002019625.1 194337831 6461388 complement(2949431..2949604) 1 NC_011060.1 hypothetical protein 2949604 6461388 Ppha_2862 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019625.1 2949431 R 324925 CDS YP_002019626.1 194337832 6461408 complement(2949644..2950099) 1 NC_011060.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cph:Cpha266_0918 protein tyrosine phosphatase; protein tyrosine phosphatase 2950099 6461408 Ppha_2863 Pelodictyon phaeoclathratiforme BU-1 protein tyrosine phosphatase YP_002019626.1 2949644 R 324925 CDS YP_002019627.1 194337833 6461400 complement(2950134..2950820) 1 NC_011060.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cte:CT0900 phosphate transport system regulatory protein; phosphate uptake regulator PhoU 2950820 6461400 Ppha_2864 Pelodictyon phaeoclathratiforme BU-1 phosphate uptake regulator PhoU YP_002019627.1 2950134 R 324925 CDS YP_002019628.1 194337834 6461417 complement(2951277..2951480) 1 NC_011060.1 KEGG: swo:Swol_2490 hypothetical protein; hypothetical protein 2951480 6461417 Ppha_2865 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019628.1 2951277 R 324925 CDS YP_002019629.1 194337835 6461438 complement(2951480..2951923) 1 NC_011060.1 KEGG: ajs:Ajs_3020 hypothetical protein; hypothetical protein 2951923 6461438 Ppha_2866 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019629.1 2951480 R 324925 CDS YP_002019630.1 194337836 6461434 complement(2952250..2952429) 1 NC_011060.1 hypothetical protein 2952429 6461434 Ppha_2867 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019630.1 2952250 R 324925 CDS YP_002019631.1 194337837 6461458 complement(2952761..2953672) 1 NC_011060.1 PFAM: Abortive infection protein; KEGG: mth:MTH623 hypothetical protein; abortive infection protein 2953672 6461458 Ppha_2868 Pelodictyon phaeoclathratiforme BU-1 abortive infection protein YP_002019631.1 2952761 R 324925 CDS YP_002019632.1 194337838 6461479 complement(2953674..2954903) 1 NC_011060.1 KEGG: ngo:NGO1209 DNA cytosine methyltransferase M.NgoMIII; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 2954903 6461479 Ppha_2869 Pelodictyon phaeoclathratiforme BU-1 DNA-cytosine methyltransferase YP_002019632.1 2953674 R 324925 CDS YP_002019633.1 194337839 6461492 complement(2954900..2955547) 1 NC_011060.1 KEGG: ngo:NGO1208 NgoMIIIM; hypothetical protein 2955547 6461492 Ppha_2870 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019633.1 2954900 R 324925 CDS YP_002019634.1 194337840 6461550 complement(2956808..2959300) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SEFIR domain protein; SMART: Tetratricopeptide domain protein; KEGG: rru:Rru_A1817 hypothetical protein; SEFIR domain-containing protein 2959300 6461550 Ppha_2873 Pelodictyon phaeoclathratiforme BU-1 SEFIR domain-containing protein YP_002019634.1 2956808 R 324925 CDS YP_002019635.1 194337841 6461576 complement(2959873..2960541) 1 NC_011060.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase 2960541 6461576 Ppha_2875 Pelodictyon phaeoclathratiforme BU-1 translaldolase YP_002019635.1 2959873 R 324925 CDS YP_002019636.1 194337842 6461611 complement(2960551..2961600) 1 NC_011060.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; deoxyhypusine synthase-like protein 2961600 6461611 Ppha_2876 Pelodictyon phaeoclathratiforme BU-1 deoxyhypusine synthase-like protein YP_002019636.1 2960551 R 324925 CDS YP_002019637.1 194337843 6461669 2961956..2963002 1 NC_011060.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2963002 6461669 Ppha_2877 Pelodictyon phaeoclathratiforme BU-1 tryptophanyl-tRNA synthetase YP_002019637.1 2961956 D 324925 CDS YP_002019638.1 194337844 6461646 2963009..2963710 1 NC_011060.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0071 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 2963710 6461646 Ppha_2878 Pelodictyon phaeoclathratiforme BU-1 beta-phosphoglucomutase family hydrolase YP_002019638.1 2963009 D 324925 CDS YP_002019639.1 194337845 6461682 2963720..2965378 1 NC_011060.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2965378 argS 6461682 argS Pelodictyon phaeoclathratiforme BU-1 arginyl-tRNA synthetase YP_002019639.1 2963720 D 324925 CDS YP_002019640.1 194337846 6461673 complement(2965341..2965985) 1 NC_011060.1 TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: pvi:Cvib_1733 nicotinate (nicotinamide) nucleotide adenylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 2965985 6461673 Ppha_2880 Pelodictyon phaeoclathratiforme BU-1 nicotinate (nicotinamide) nucleotide adenylyltransferase YP_002019640.1 2965341 R 324925 CDS YP_002019641.1 194337847 6461694 complement(2966001..2966897) 1 NC_011060.1 KEGG: cph:Cpha266_2704 lipoprotein; lipoprotein 2966897 6461694 Ppha_2881 Pelodictyon phaeoclathratiforme BU-1 lipoprotein YP_002019641.1 2966001 R 324925 CDS YP_002019642.1 194337848 6461712 complement(2967290..2967826) 1 NC_011060.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 2967826 6461712 Ppha_2882 Pelodictyon phaeoclathratiforme BU-1 F0F1 ATP synthase subunit delta YP_002019642.1 2967290 R 324925 CDS YP_002019643.1 194337849 6461725 complement(2967843..2968370) 1 NC_011060.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 2968370 6461725 Ppha_2883 Pelodictyon phaeoclathratiforme BU-1 F0F1 ATP synthase subunit B YP_002019643.1 2967843 R 324925 CDS YP_002019644.1 194337850 6462534 complement(2968473..2968694) 1 NC_011060.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: cch:Cag_0065 ATP synthase F0, C subunit; ATP synthase F0 subunit C 2968694 6462534 Ppha_2884 Pelodictyon phaeoclathratiforme BU-1 ATP synthase F0 subunit C YP_002019644.1 2968473 R 324925 CDS YP_002019645.1 194337851 6461744 complement(2968814..2969836) 1 NC_011060.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 2969836 6461744 Ppha_2885 Pelodictyon phaeoclathratiforme BU-1 F0F1 ATP synthase subunit A YP_002019645.1 2968814 R 324925 CDS YP_002019646.1 194337852 6461792 complement(2969833..2970219) 1 NC_011060.1 KEGG: plt:Plut_2099 hypothetical protein; hypothetical protein 2970219 6461792 Ppha_2886 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019646.1 2969833 R 324925 CDS YP_002019647.1 194337853 6461772 complement(2970266..2970511) 1 NC_011060.1 KEGG: cph:Cpha266_2711 hypothetical protein; hypothetical protein 2970511 6461772 Ppha_2887 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019647.1 2970266 R 324925 CDS YP_002019648.1 194337854 6461782 2970762..2971580 1 NC_011060.1 PFAM: protein of unknown function DUF152; KEGG: cch:Cag_0061 protein of unknown function DUF152; hypothetical protein 2971580 6461782 Ppha_2888 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019648.1 2970762 D 324925 CDS YP_002019649.1 194337855 6461817 complement(2971626..2972918) 1 NC_011060.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: plt:Plut_2104 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase 2972918 6461817 Ppha_2889 Pelodictyon phaeoclathratiforme BU-1 acetyl-CoA hydrolase/transferase YP_002019649.1 2971626 R 324925 CDS YP_002019650.1 194337856 6461814 complement(2972952..2974244) 1 NC_011060.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 2974244 6461814 Ppha_2890 Pelodictyon phaeoclathratiforme BU-1 cell division protein FtsZ YP_002019650.1 2972952 R 324925 CDS YP_002019651.1 194337857 6461838 complement(2974287..2975588) 1 NC_011060.1 PFAM: cell division protein FtsA; KEGG: cch:Cag_0058 cell division protein FtsA; cell division protein FtsA 2975588 6461838 Ppha_2891 Pelodictyon phaeoclathratiforme BU-1 cell division protein FtsA YP_002019651.1 2974287 R 324925 CDS YP_002019652.1 194337858 6462438 complement(2975610..2976413) 1 NC_011060.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cph:Cpha266_2718 polypeptide-transport-associated domain protein, FtsQ-type; Polypeptide-transport-associated domain-containing protein FtsQ-type 2976413 6462438 Ppha_2892 Pelodictyon phaeoclathratiforme BU-1 Polypeptide-transport-associated domain-containing protein FtsQ-type YP_002019652.1 2975610 R 324925 CDS YP_002019653.1 194337859 6461857 complement(2976410..2977849) 1 NC_011060.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2977849 murC 6461857 murC Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylmuramate--L-alanine ligase YP_002019653.1 2976410 R 324925 CDS YP_002019654.1 194337860 6461887 complement(2977864..2978961) 1 NC_011060.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2978961 murG 6461887 murG Pelodictyon phaeoclathratiforme BU-1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002019654.1 2977864 R 324925 CDS YP_002019655.1 194337861 6461878 complement(2978958..2980187) 1 NC_011060.1 PFAM: cell cycle protein; KEGG: cph:Cpha266_2722 cell cycle protein; cell cycle protein 2980187 6461878 Ppha_2895 Pelodictyon phaeoclathratiforme BU-1 cell cycle protein YP_002019655.1 2978958 R 324925 CDS YP_002019656.1 194337862 6461901 complement(2980160..2981554) 1 NC_011060.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cch:Cag_0053 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase 2981554 6461901 Ppha_2896 Pelodictyon phaeoclathratiforme BU-1 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002019656.1 2980160 R 324925 CDS YP_002019657.1 194337863 6461909 complement(2981560..2982666) 1 NC_011060.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2982666 mraY 6461909 mraY Pelodictyon phaeoclathratiforme BU-1 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002019657.1 2981560 R 324925 CDS YP_002019658.1 194337864 6461921 complement(2982670..2985687) 1 NC_011060.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_2726 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase 2985687 6461921 Ppha_2898 Pelodictyon phaeoclathratiforme BU-1 bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase YP_002019658.1 2982670 R 324925 CDS YP_002019659.1 194337865 6461938 complement(2985684..2987726) 1 NC_011060.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cph:Cpha266_2727 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 2987726 6461938 Ppha_2899 Pelodictyon phaeoclathratiforme BU-1 peptidoglycan glycosyltransferase YP_002019659.1 2985684 R 324925 CDS YP_002019660.1 194337866 6461927 complement(2987758..2988189) 1 NC_011060.1 KEGG: cph:Cpha266_2728 hypothetical protein; hypothetical protein 2988189 6461927 Ppha_2900 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019660.1 2987758 R 324925 CDS YP_002019661.1 194337867 6461945 complement(2988176..2989174) 1 NC_011060.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cph:Cpha266_2729 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW 2989174 6461945 Ppha_2901 Pelodictyon phaeoclathratiforme BU-1 S-adenosyl-methyltransferase MraW YP_002019661.1 2988176 R 324925 CDS YP_002019662.1 194337868 6461966 complement(2989174..2989632) 1 NC_011060.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 2989632 6461966 Ppha_2902 Pelodictyon phaeoclathratiforme BU-1 cell division protein MraZ YP_002019662.1 2989174 R 324925 CDS YP_002019663.1 194337869 6461984 2989859..2990389 1 NC_011060.1 KEGG: pvi:Cvib_1763 hypothetical protein; hypothetical protein 2990389 6461984 Ppha_2903 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019663.1 2989859 D 324925 CDS YP_002019664.1 194337870 6462104 2990457..2990786 1 NC_011060.1 PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase; Chorismate mutase 2990786 6462104 Ppha_2904 Pelodictyon phaeoclathratiforme BU-1 Chorismate mutase YP_002019664.1 2990457 D 324925 CDS YP_002019665.1 194337871 6462027 2990801..2991814 1 NC_011060.1 PFAM: aminodeoxychorismate lyase; KEGG: cph:Cpha266_2733 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2991814 6462027 Ppha_2905 Pelodictyon phaeoclathratiforme BU-1 aminodeoxychorismate lyase YP_002019665.1 2990801 D 324925 CDS YP_002019666.1 194337872 6462157 2991919..2993112 1 NC_011060.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2993112 pgk 6462157 pgk Pelodictyon phaeoclathratiforme BU-1 phosphoglycerate kinase YP_002019666.1 2991919 D 324925 CDS YP_002019667.1 194337873 6462047 2993175..2993996 1 NC_011060.1 PFAM: Rhomboid family protein; KEGG: cph:Cpha266_2735 rhomboid family protein; rhomboid family protein 2993996 6462047 Ppha_2907 Pelodictyon phaeoclathratiforme BU-1 rhomboid family protein YP_002019667.1 2993175 D 324925 CDS YP_002019668.1 194337874 6462194 2993993..2994451 1 NC_011060.1 PFAM: protein of unknown function DUF1232; KEGG: plt:Plut_2125 hypothetical protein; hypothetical protein 2994451 6462194 Ppha_2908 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019668.1 2993993 D 324925 CDS YP_002019669.1 194337875 6462085 complement(2994429..2995895) 1 NC_011060.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: plt:Plut_2126 23S rRNA methyltransferase; TrmA family RNA methyltransferase 2995895 6462085 Ppha_2909 Pelodictyon phaeoclathratiforme BU-1 TrmA family RNA methyltransferase YP_002019669.1 2994429 R 324925 CDS YP_002019670.1 194337876 6462138 2996724..3000062 1 NC_011060.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: psa:PST_3195 ATP-dependent helicase HEPA; helicase domain-containing protein 3000062 6462138 Ppha_2911 Pelodictyon phaeoclathratiforme BU-1 helicase domain-containing protein YP_002019670.1 2996724 D 324925 CDS YP_002019671.1 194337877 6462161 3000067..3004083 1 NC_011060.1 KEGG: rrs:RoseRS_0299 hypothetical protein; hypothetical protein 3004083 6462161 Ppha_2912 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019671.1 3000067 D 324925 CDS YP_002019672.1 194337878 6462175 3004080..3005633 1 NC_011060.1 KEGG: cth:Cthe_1161 hypothetical protein; hypothetical protein 3005633 6462175 Ppha_2913 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019672.1 3004080 D 324925 CDS YP_002019673.1 194337879 6462096 3005959..3006675 1 NC_011060.1 KEGG: cph:Cpha266_1605 hypothetical protein; hypothetical protein 3006675 6462096 Ppha_2914 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019673.1 3005959 D 324925 CDS YP_002019674.1 194337880 6462108 3006672..3007124 1 NC_011060.1 KEGG: cph:Cpha266_1606 hypothetical protein; hypothetical protein 3007124 6462108 Ppha_2915 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019674.1 3006672 D 324925 CDS YP_002019675.1 194337881 6462118 complement(3007428..3007679) 1 NC_011060.1 hypothetical protein 3007679 6462118 Ppha_2916 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019675.1 3007428 R 324925 CDS YP_002019676.1 194337882 6462125 complement(3007830..3012665) 1 NC_011060.1 PFAM: hypothetical protein-containing protein; hypothetical protein; SEFIR domain protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3004 hypothetical protein protein; SEFIR domain-containing protein 3012665 6462125 Ppha_2917 Pelodictyon phaeoclathratiforme BU-1 SEFIR domain-containing protein YP_002019676.1 3007830 R 324925 CDS YP_002019677.1 194337883 6462156 complement(3012911..3013477) 1 NC_011060.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mag:amb2384 peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 3013477 6462156 Ppha_2918 Pelodictyon phaeoclathratiforme BU-1 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_002019677.1 3012911 R 324925 CDS YP_002019678.1 194337884 6462082 complement(3013528..3014442) 1 NC_011060.1 PFAM: ROK family protein; KEGG: cph:Cpha266_2738 N-acetylglucosamine kinase; ROK family protein 3014442 6462082 Ppha_2919 Pelodictyon phaeoclathratiforme BU-1 ROK family protein YP_002019678.1 3013528 R 324925 CDS YP_002019679.1 194337885 6462181 complement(3014435..3015040) 1 NC_011060.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_1770 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 3015040 6462181 Ppha_2920 Pelodictyon phaeoclathratiforme BU-1 PA-phosphatase-like phosphoesterase YP_002019679.1 3014435 R 324925 CDS YP_002019680.1 194337886 6462275 complement(3015046..3016797) 1 NC_011060.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: cch:Cag_2030 Oxa1/60 kDa IMP family protein; 60 kDa inner membrane insertion protein 3016797 6462275 Ppha_2921 Pelodictyon phaeoclathratiforme BU-1 60 kDa inner membrane insertion protein YP_002019680.1 3015046 R 324925 CDS YP_002019681.1 194337887 6462281 complement(3016790..3017083) 1 NC_011060.1 PFAM: protein of unknown function DUF37; KEGG: cch:Cag_2031 protein of unknown function DUF37; hypothetical protein 3017083 6462281 Ppha_2922 Pelodictyon phaeoclathratiforme BU-1 hypothetical protein YP_002019681.1 3016790 R 324925 CDS YP_002019682.1 194337888 6462288 complement(3017140..3017550) 1 NC_011060.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3017550 rnpA 6462288 rnpA Pelodictyon phaeoclathratiforme BU-1 ribonuclease P YP_002019682.1 3017140 R 324925 CDS YP_002019683.1 194337889 6462242 complement(3017605..3017766) 1 NC_011060.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3017766 rpmH 6462242 rpmH Pelodictyon phaeoclathratiforme BU-1 50S ribosomal protein L34 YP_002019683.1 3017605 R 324925 CDS