-- dump date 20140619_233103 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 324925000001 SEQ_END SEQ_END NC_011060.1 3018238 3018238 DR NC_011060.1; contig end 3018238..3018238 Pelodictyon phaeoclathratiforme BU-1 YP_002016977.1 CDS dnaA NC_011060.1 1 1464 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1464 Pelodictyon phaeoclathratiforme BU-1 6461738 YP_002016978.1 CDS Ppha_0002 NC_011060.1 1746 2870 D KEGG: plt:Plut_0001 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1746..2870 Pelodictyon phaeoclathratiforme BU-1 6463180 YP_002016979.1 CDS Ppha_0003 NC_011060.1 2883 3992 D TIGRFAM: DNA replication and repair protein RecF; KEGG: pvi:Cvib_0003 DNA replication and repair protein RecF; DNA replication and repair protein RecF 2883..3992 Pelodictyon phaeoclathratiforme BU-1 6462811 YP_002016980.1 CDS Ppha_0004 NC_011060.1 3995 4288 D KEGG: plt:Plut_0003 hypothetical protein; hypothetical protein 3995..4288 Pelodictyon phaeoclathratiforme BU-1 6462455 YP_002016981.1 CDS Ppha_0005 NC_011060.1 4331 5554 R PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: pvi:Cvib_0005 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(4331..5554) Pelodictyon phaeoclathratiforme BU-1 6463177 YP_002016982.1 CDS Ppha_0006 NC_011060.1 5681 8116 R PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cph:Cpha266_0027 DNA polymerase B region; DNA polymerase B region complement(5681..8116) Pelodictyon phaeoclathratiforme BU-1 6463462 YP_002016983.1 CDS Ppha_0007 NC_011060.1 8136 10001 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(8136..10001) Pelodictyon phaeoclathratiforme BU-1 6462807 YP_002016984.1 CDS Ppha_0008 NC_011060.1 10049 10165 D hypothetical protein 10049..10165 Pelodictyon phaeoclathratiforme BU-1 6463170 YP_002016985.1 CDS Ppha_0009 NC_011060.1 10466 10903 D KEGG: cph:Cpha266_0029 thiosulfate-binding protein SoxY; thiosulfate-binding protein SoxY 10466..10903 Pelodictyon phaeoclathratiforme BU-1 6462803 YP_002016986.1 CDS Ppha_0010 NC_011060.1 10928 11236 D PFAM: Sulphur oxidation protein SoxZ; KEGG: cph:Cpha266_0030 sulfur oxidation protein SoxZ; sulfur oxidation protein SoxZ 10928..11236 Pelodictyon phaeoclathratiforme BU-1 6463168 YP_002016987.1 CDS Ppha_0011 NC_011060.1 11297 11671 D PFAM: cytochrome c class I; KEGG: cph:Cpha266_0031 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit; cytochrome c class I 11297..11671 Pelodictyon phaeoclathratiforme BU-1 6462796 YP_002016988.1 CDS Ppha_0012 NC_011060.1 11686 12978 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0032 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; Flavocytochrome c sulfide dehydrogenase 11686..12978 Pelodictyon phaeoclathratiforme BU-1 6463161 YP_002016989.1 CDS secD NC_011060.1 13137 15011 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 13137..15011 Pelodictyon phaeoclathratiforme BU-1 6462790 YP_002016990.1 CDS secF NC_011060.1 15033 15968 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 15033..15968 Pelodictyon phaeoclathratiforme BU-1 6462169 YP_002016991.1 CDS Ppha_0015 NC_011060.1 16068 17384 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pvi:Cvib_0012 PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain 16068..17384 Pelodictyon phaeoclathratiforme BU-1 6462789 YP_002016992.1 CDS Ppha_0016 NC_011060.1 17373 19322 R KEGG: cch:Cag_0029 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B complement(17373..19322) Pelodictyon phaeoclathratiforme BU-1 6463156 YP_002016993.1 CDS Ppha_0017 NC_011060.1 19407 19793 R PFAM: protein of unknown function UPF0102; KEGG: cph:Cpha266_0037 hypothetical protein; hypothetical protein complement(19407..19793) Pelodictyon phaeoclathratiforme BU-1 6462786 YP_002016994.1 CDS rnhB NC_011060.1 19790 20410 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(19790..20410) Pelodictyon phaeoclathratiforme BU-1 6463147 YP_002016995.1 CDS Ppha_0019 NC_011060.1 20484 21158 R PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1465 hypothetical protein; hypothetical protein complement(20484..21158) Pelodictyon phaeoclathratiforme BU-1 6462784 YP_002016996.1 CDS Ppha_0020 NC_011060.1 21238 21555 R PFAM: HicB family protein; KEGG: cph:Cpha266_2191 HicB family protein; HicB family protein complement(21238..21555) Pelodictyon phaeoclathratiforme BU-1 6463134 YP_002016997.1 CDS Ppha_0021 NC_011060.1 21542 21808 R KEGG: cph:Cpha266_2192 HicA protein; HicA protein complement(21542..21808) Pelodictyon phaeoclathratiforme BU-1 6462782 YP_002016998.1 CDS Ppha_0024 NC_011060.1 22188 22418 R hypothetical protein complement(22188..22418) Pelodictyon phaeoclathratiforme BU-1 6463122 YP_002016999.1 CDS Ppha_0025 NC_011060.1 22598 24286 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cph:Cpha266_0040 ribonuclease, Rne/Rng family; ribonuclease, Rne/Rng family 22598..24286 Pelodictyon phaeoclathratiforme BU-1 6463104 YP_002017000.1 CDS dapD NC_011060.1 24313 25176 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 24313..25176 Pelodictyon phaeoclathratiforme BU-1 6462778 YP_002017001.1 CDS Ppha_0027 NC_011060.1 25181 26938 D KEGG: plt:Plut_0014 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 25181..26938 Pelodictyon phaeoclathratiforme BU-1 6462772 YP_002017002.1 CDS Ppha_0028 NC_011060.1 26929 27615 R KEGG: cch:Cag_0034 hypothetical protein; hypothetical protein complement(26929..27615) Pelodictyon phaeoclathratiforme BU-1 6463079 YP_002017003.1 CDS Ppha_0029 NC_011060.1 27616 28758 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cch:Cag_0035 geranylgeranyl reductase; geranylgeranyl reductase complement(27616..28758) Pelodictyon phaeoclathratiforme BU-1 6462771 YP_002017004.1 CDS Ppha_0030 NC_011060.1 28762 30237 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(28762..30237) Pelodictyon phaeoclathratiforme BU-1 6462767 YP_002017005.1 CDS Ppha_0031 NC_011060.1 30497 30862 D PFAM: DsrE family protein; KEGG: cch:Cag_1216 hypothetical protein; DsrE family protein 30497..30862 Pelodictyon phaeoclathratiforme BU-1 6463071 YP_002017006.1 CDS Ppha_0032 NC_011060.1 30963 31736 R PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein; hypothetical protein complement(30963..31736) Pelodictyon phaeoclathratiforme BU-1 6463060 YP_002017007.1 CDS Ppha_0033 NC_011060.1 31720 31908 R hypothetical protein complement(31720..31908) Pelodictyon phaeoclathratiforme BU-1 6462765 YP_002017008.1 CDS Ppha_0034 NC_011060.1 31945 32229 D KEGG: cch:Cag_1214 hypothetical protein; hypothetical protein 31945..32229 Pelodictyon phaeoclathratiforme BU-1 6463044 YP_002017009.1 CDS Ppha_0035 NC_011060.1 32299 33480 R KEGG: cch:Cag_1582 heterodisulfide reductase; heterodisulfide reductase complement(32299..33480) Pelodictyon phaeoclathratiforme BU-1 6462764 YP_002017010.1 CDS Ppha_0036 NC_011060.1 33575 35827 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase delta subunit; FAD dependent oxidoreductase; KEGG: cch:Cag_1583 heterodisulfide reductase, subunit A/hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase subunit delta complement(33575..35827) Pelodictyon phaeoclathratiforme BU-1 6463029 YP_002017011.1 CDS Ppha_0037 NC_011060.1 35831 37072 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_1584 heterodisulfide reductase, subunit A; 4Fe-4S ferredoxin complement(35831..37072) Pelodictyon phaeoclathratiforme BU-1 6462076 YP_002017012.1 CDS Ppha_0038 NC_011060.1 37145 37237 R hypothetical protein complement(37145..37237) Pelodictyon phaeoclathratiforme BU-1 6462762 YP_002017013.1 CDS Ppha_0039 NC_011060.1 37237 39213 R catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha complement(37237..39213) Pelodictyon phaeoclathratiforme BU-1 6462755 YP_002017014.1 CDS Ppha_0040 NC_011060.1 39242 39664 R TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0864 adenylylsulfate reductase, subunit B; adenylylsulfate reductase subunit beta complement(39242..39664) Pelodictyon phaeoclathratiforme BU-1 6462746 YP_002017015.1 CDS sat NC_011060.1 39791 41002 R ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase complement(39791..41002) Pelodictyon phaeoclathratiforme BU-1 6463008 YP_002017016.1 CDS Ppha_0042 NC_011060.1 41661 42779 R PFAM: conserved hypothetical protein; KEGG: cte:CT0845 hypothetical protein; hypothetical protein complement(41661..42779) Pelodictyon phaeoclathratiforme BU-1 6462985 YP_002017017.1 CDS Ppha_0043 NC_011060.1 42838 43029 D hypothetical protein 42838..43029 Pelodictyon phaeoclathratiforme BU-1 6462737 YP_002017018.1 CDS Ppha_0044 NC_011060.1 43098 43583 D KEGG: ccr:CC_3052 hypothetical protein; hypothetical protein 43098..43583 Pelodictyon phaeoclathratiforme BU-1 6461709 YP_002017019.1 CDS Ppha_0045 NC_011060.1 43608 43925 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cph:Cpha266_0046 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(43608..43925) Pelodictyon phaeoclathratiforme BU-1 6462976 YP_002017020.1 CDS Ppha_0046 NC_011060.1 43991 44959 R PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cph:Cpha266_0047 muramoyltetrapeptide carboxypeptidase; Muramoyltetrapeptide carboxypeptidase complement(43991..44959) Pelodictyon phaeoclathratiforme BU-1 6462734 YP_002017021.1 CDS Ppha_0047 NC_011060.1 45005 45271 R PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: pvi:Cvib_0024 H+-transporting two-sector ATPase, delta/epsilon subunit; H+transporting two-sector ATPase aubunit delta/epsilon complement(45005..45271) Pelodictyon phaeoclathratiforme BU-1 6462729 YP_002017022.1 CDS Ppha_0048 NC_011060.1 45287 46675 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(45287..46675) Pelodictyon phaeoclathratiforme BU-1 6462964 YP_002017023.1 CDS Ppha_0049 NC_011060.1 47024 47566 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: pvi:Cvib_0026 redoxin domain protein; redoxin domain-containing protein 47024..47566 Pelodictyon phaeoclathratiforme BU-1 6462956 YP_002017024.1 CDS Ppha_0050 NC_011060.1 47709 49562 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 47709..49562 Pelodictyon phaeoclathratiforme BU-1 6462941 YP_002017025.1 CDS Ppha_0051 NC_011060.1 49631 49843 R PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein; hypothetical protein complement(49631..49843) Pelodictyon phaeoclathratiforme BU-1 6462717 YP_002017026.1 CDS Ppha_0052 NC_011060.1 49930 50814 R PFAM: zinc finger SWIM domain protein; KEGG: cph:Cpha266_1236 zinc finger, SWIM domain protein; zinc finger SWIM domain-containing protein complement(49930..50814) Pelodictyon phaeoclathratiforme BU-1 6462934 YP_002017027.1 CDS Ppha_0053 NC_011060.1 50820 53843 R KEGG: cph:Cpha266_1235 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; Non-specific serine/threonine protein kinase complement(50820..53843) Pelodictyon phaeoclathratiforme BU-1 6461759 YP_002017028.1 CDS Ppha_0054 NC_011060.1 53944 54087 R hypothetical protein complement(53944..54087) Pelodictyon phaeoclathratiforme BU-1 6462919 YP_002017029.1 CDS Ppha_0055 NC_011060.1 54217 54762 R KEGG: fgr:FG06081.1 hypothetical protein; hypothetical protein complement(54217..54762) Pelodictyon phaeoclathratiforme BU-1 6462711 YP_002017030.1 CDS Ppha_0056 NC_011060.1 55025 56326 D PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: plt:Plut_0053 transporter; major facilitator superfamily protein 55025..56326 Pelodictyon phaeoclathratiforme BU-1 6462907 YP_002017031.1 CDS Ppha_0057 NC_011060.1 56330 57310 R KEGG: cph:Cpha266_0071 helix-turn-helix domain protein; XRE family transcriptional regulator complement(56330..57310) Pelodictyon phaeoclathratiforme BU-1 6462706 YP_002017032.1 CDS Ppha_0058 NC_011060.1 57264 57695 R KEGG: cph:Cpha266_0072 hypothetical protein; hypothetical protein complement(57264..57695) Pelodictyon phaeoclathratiforme BU-1 6462896 YP_002017033.1 CDS Ppha_0060 NC_011060.1 58431 59144 D TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: cte:CT2274 hypothetical protein; yecA family protein 58431..59144 Pelodictyon phaeoclathratiforme BU-1 6462700 YP_002017034.1 CDS Ppha_0061 NC_011060.1 59264 59488 R TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein; addiction module protein complement(59264..59488) Pelodictyon phaeoclathratiforme BU-1 6462884 YP_002017035.1 CDS Ppha_0062 NC_011060.1 60144 61208 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mae:Maeo_0832 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(60144..61208) Pelodictyon phaeoclathratiforme BU-1 6462694 YP_002017036.1 CDS Ppha_0063 NC_011060.1 61859 63478 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0093 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(61859..63478) Pelodictyon phaeoclathratiforme BU-1 6462698 YP_002017037.1 CDS Ppha_0064 NC_011060.1 63500 64540 R PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0094 secretion protein HlyD family protein; secretion protein HlyD family protein complement(63500..64540) Pelodictyon phaeoclathratiforme BU-1 6462876 YP_002017038.1 CDS Ppha_0065 NC_011060.1 64527 64958 R PFAM: UspA domain protein; KEGG: cph:Cpha266_0095 UspA domain protein; UspA domain-containing protein complement(64527..64958) Pelodictyon phaeoclathratiforme BU-1 6462693 YP_002017039.1 CDS Ppha_0066 NC_011060.1 64960 66291 R PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0096 outer membrane efflux protein; outer membrane efflux protein complement(64960..66291) Pelodictyon phaeoclathratiforme BU-1 6462868 YP_002017040.1 CDS Ppha_0067 NC_011060.1 66499 68598 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_0097 DNA-binding protein fis / transcriptional regulator, Fis family; NifA subfamily transcriptional regulator 66499..68598 Pelodictyon phaeoclathratiforme BU-1 6462692 YP_002017041.1 CDS Ppha_0068 NC_011060.1 68635 69828 R PFAM: aminotransferase class I and II; KEGG: cph:Cpha266_1972 transcriptional regulator, GntR family; GntR family transcriptional regulator complement(68635..69828) Pelodictyon phaeoclathratiforme BU-1 6462864 YP_002017042.1 CDS Ppha_0069 NC_011060.1 69838 70266 R PFAM: amino acid-binding ACT domain protein; KEGG: cph:Cpha266_1971 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(69838..70266) Pelodictyon phaeoclathratiforme BU-1 6462684 YP_002017043.1 CDS Ppha_0070 NC_011060.1 70760 72106 D PFAM: peptidase M12A astacin; SMART: peptidase metallopeptidase; KEGG: cph:Cpha266_0056 peptidase M12A, astacin; peptidase M12A astacin 70760..72106 Pelodictyon phaeoclathratiforme BU-1 6462855 YP_002017044.1 CDS Ppha_0071 NC_011060.1 72179 73465 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0055 radical SAM protein; radical SAM protein 72179..73465 Pelodictyon phaeoclathratiforme BU-1 6462680 YP_002017045.1 CDS Ppha_0072 NC_011060.1 73517 73879 D KEGG: cph:Cpha266_0054 hypothetical protein; hypothetical protein 73517..73879 Pelodictyon phaeoclathratiforme BU-1 6462850 YP_002017046.1 CDS Ppha_0073 NC_011060.1 73894 75195 R KEGG: cph:Cpha266_1968 phenylacetate-CoA ligase; phenylacetate--CoA ligase complement(73894..75195) Pelodictyon phaeoclathratiforme BU-1 6462677 YP_002017047.1 CDS Ppha_0074 NC_011060.1 75192 75782 R Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta complement(75192..75782) Pelodictyon phaeoclathratiforme BU-1 6462846 YP_002017048.1 CDS Ppha_0075 NC_011060.1 75790 77400 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cph:Cpha266_1966 indolepyruvate ferredoxin oxidoreductase; Indolepyruvate ferredoxin oxidoreductase complement(75790..77400) Pelodictyon phaeoclathratiforme BU-1 6462676 YP_002017049.1 CDS Ppha_0076 NC_011060.1 77748 79775 D KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 77748..79775 Pelodictyon phaeoclathratiforme BU-1 6462841 YP_002017050.1 CDS Ppha_0077 NC_011060.1 79809 80420 R KEGG: cph:Cpha266_2683 hypothetical protein; hypothetical protein complement(79809..80420) Pelodictyon phaeoclathratiforme BU-1 6462670 YP_002017051.1 CDS prfA NC_011060.1 80550 81623 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(80550..81623) Pelodictyon phaeoclathratiforme BU-1 6462832 YP_002017052.1 CDS Ppha_0079 NC_011060.1 81642 83003 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: cph:Cpha266_2681 RseP peptidase. Metallo peptidase. MEROPS family M50B; membrane-associated zinc metalloprotease complement(81642..83003) Pelodictyon phaeoclathratiforme BU-1 6461121 YP_002017053.1 CDS Ppha_0080 NC_011060.1 83094 84242 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(83094..84242) Pelodictyon phaeoclathratiforme BU-1 6461601 YP_002017054.1 CDS Ppha_0081 NC_011060.1 84553 86646 R KEGG: cph:Cpha266_2678 FtsH-2 peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(84553..86646) Pelodictyon phaeoclathratiforme BU-1 6461471 YP_002017055.1 CDS Ppha_0082 NC_011060.1 86903 87727 D TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cph:Cpha266_2677 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 86903..87727 Pelodictyon phaeoclathratiforme BU-1 6462064 YP_002017056.1 CDS Ppha_0083 NC_011060.1 87830 89677 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 87830..89677 Pelodictyon phaeoclathratiforme BU-1 6461295 YP_002017057.1 CDS Ppha_0084 NC_011060.1 89794 90735 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; domain of unknown function DUF1731; KEGG: cch:Cag_0004 hypothetical protein; hypothetical protein 89794..90735 Pelodictyon phaeoclathratiforme BU-1 6463152 YP_002017058.1 CDS Ppha_0085 NC_011060.1 90771 91268 D PFAM: Ferritin Dps family protein; KEGG: cph:Cpha266_2674 ferritin, Dps family protein; ferritin Dps family protein 90771..91268 Pelodictyon phaeoclathratiforme BU-1 6462100 YP_002017059.1 CDS Ppha_0086 NC_011060.1 91467 92801 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: cph:Cpha266_2672 ammonium transporter; ammonium transporter 91467..92801 Pelodictyon phaeoclathratiforme BU-1 6461886 YP_002017060.1 CDS Ppha_0087 NC_011060.1 92811 93152 D PFAM: nitrogen regulatory protein P-II; KEGG: cch:Cag_1998 nitrogen regulatory protein P-II (GlnB, GlnK); nitrogen regulatory protein P-II 92811..93152 Pelodictyon phaeoclathratiforme BU-1 6462225 YP_002017061.1 CDS Ppha_0088 NC_011060.1 93212 93769 R PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: plt:Plut_0092 hypothetical protein; hypothetical protein complement(93212..93769) Pelodictyon phaeoclathratiforme BU-1 6461367 YP_002017062.1 CDS Ppha_0089 NC_011060.1 94003 95277 D PFAM: conserved hypothetical protein; KEGG: plt:Plut_0094 hypothetical protein; hypothetical protein 94003..95277 Pelodictyon phaeoclathratiforme BU-1 6462068 YP_002017063.1 CDS Ppha_0090 NC_011060.1 95287 95724 D PFAM: protein of unknown function UPF0079; KEGG: cph:Cpha266_2666 protein of unknown function UPF0079; hypothetical protein 95287..95724 Pelodictyon phaeoclathratiforme BU-1 6461871 YP_002017064.1 CDS Ppha_0091 NC_011060.1 95724 96395 D PFAM: peptidase M22 glycoprotease; KEGG: cch:Cag_1986 protease; peptidase M22 glycoprotease 95724..96395 Pelodictyon phaeoclathratiforme BU-1 6462101 YP_002017065.1 CDS Ppha_0092 NC_011060.1 96522 97412 R hypothetical protein complement(96522..97412) Pelodictyon phaeoclathratiforme BU-1 6462658 YP_002017066.1 CDS Ppha_0093 NC_011060.1 97887 98126 D hypothetical protein 97887..98126 Pelodictyon phaeoclathratiforme BU-1 6461063 YP_002017067.1 CDS Ppha_0094 NC_011060.1 98123 98530 D KEGG: syn:sll1715 hypothetical protein; hypothetical protein 98123..98530 Pelodictyon phaeoclathratiforme BU-1 6460961 YP_002017068.1 CDS Ppha_0095 NC_011060.1 98858 99253 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: plt:Plut_0097 iojap-related protein; iojap family protein 98858..99253 Pelodictyon phaeoclathratiforme BU-1 6462249 YP_002017069.1 CDS Ppha_0096 NC_011060.1 99376 101859 D KEGG: cph:Cpha266_2663 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 99376..101859 Pelodictyon phaeoclathratiforme BU-1 6462121 YP_002017070.1 CDS pyrG NC_011060.1 101966 103663 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 101966..103663 Pelodictyon phaeoclathratiforme BU-1 6461502 YP_002017071.1 CDS Ppha_0098 NC_011060.1 109304 109570 D hypothetical protein 109304..109570 Pelodictyon phaeoclathratiforme BU-1 6462045 YP_002017072.1 CDS Ppha_0099 NC_011060.1 109679 110380 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0756 PHP C-terminal domain protein; PHP domain-containing protein 109679..110380 Pelodictyon phaeoclathratiforme BU-1 6462417 YP_002017073.1 CDS Ppha_0100 NC_011060.1 110428 112626 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: cph:Cpha266_0755 catalase/peroxidase HPI; catalase/peroxidase HPI complement(110428..112626) Pelodictyon phaeoclathratiforme BU-1 6462605 YP_002017074.1 CDS Ppha_0101 NC_011060.1 112903 113322 R PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0754 ferric uptake regulator, Fur family; Fur family ferric uptake regulator complement(112903..113322) Pelodictyon phaeoclathratiforme BU-1 6461957 YP_002017075.1 CDS Ppha_0102 NC_011060.1 113611 114216 D KEGG: cph:Cpha266_2695 hypothetical protein; hypothetical protein 113611..114216 Pelodictyon phaeoclathratiforme BU-1 6461155 YP_002017076.1 CDS Ppha_0103 NC_011060.1 114244 114585 R PFAM: transcriptional coactivator/pterin dehydratase; KEGG: plt:Plut_0106 pterin-4A-carbinolamine dehydratase; transcriptional coactivator/pterin dehydratase complement(114244..114585) Pelodictyon phaeoclathratiforme BU-1 6461845 YP_002017077.1 CDS Ppha_0104 NC_011060.1 120364 120792 D PFAM: thioesterase superfamily protein; KEGG: cph:Cpha266_2516 thioesterase superfamily protein; thioesterase superfamily protein 120364..120792 Pelodictyon phaeoclathratiforme BU-1 6462494 YP_002017078.1 CDS Ppha_0105 NC_011060.1 120823 121350 D KEGG: cch:Cag_0092 hypothetical protein; hypothetical protein 120823..121350 Pelodictyon phaeoclathratiforme BU-1 6462081 YP_002017079.1 CDS Ppha_0106 NC_011060.1 121356 122354 D PFAM: glycosyl transferase family 9; KEGG: cph:Cpha266_2514 glycosyl transferase, family 9; glycosyl transferase family protein 121356..122354 Pelodictyon phaeoclathratiforme BU-1 6462400 YP_002017080.1 CDS rpsF NC_011060.1 122545 122949 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 122545..122949 Pelodictyon phaeoclathratiforme BU-1 6462484 YP_002017081.1 CDS Ppha_0108 NC_011060.1 123016 123489 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cph:Cpha266_2511 single-strand binding protein; single-strand binding protein 123016..123489 Pelodictyon phaeoclathratiforme BU-1 6462231 YP_002017082.1 CDS rpsR NC_011060.1 123525 123803 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 123525..123803 Pelodictyon phaeoclathratiforme BU-1 6461684 YP_002017083.1 CDS rplI NC_011060.1 123840 124295 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 123840..124295 Pelodictyon phaeoclathratiforme BU-1 6461123 YP_002017084.1 CDS Ppha_0111 NC_011060.1 124399 124599 D KEGG: cph:Cpha266_1405 hypothetical protein; hypothetical protein 124399..124599 Pelodictyon phaeoclathratiforme BU-1 6461111 YP_002017085.1 CDS Ppha_0112 NC_011060.1 124621 124935 R KEGG: cph:Cpha266_0154 rhodanese domain protein; rhodanese domain-containing protein complement(124621..124935) Pelodictyon phaeoclathratiforme BU-1 6462396 YP_002017086.1 CDS Ppha_0113 NC_011060.1 125171 125767 R TIGRFAM: yecA family protein; KEGG: cph:Cpha266_0914 YecA family protein; yecA family protein complement(125171..125767) Pelodictyon phaeoclathratiforme BU-1 6461630 YP_002017087.1 CDS Ppha_0114 NC_011060.1 125891 126310 R PFAM: protein of unknown function UPF0047; KEGG: cph:Cpha266_0833 protein of unknown function UPF0047; hypothetical protein complement(125891..126310) Pelodictyon phaeoclathratiforme BU-1 6462374 YP_002017088.1 CDS Ppha_0116 NC_011060.1 128557 128991 D KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 128557..128991 Pelodictyon phaeoclathratiforme BU-1 6461200 YP_002017089.1 CDS Ppha_0118 NC_011060.1 129368 130834 R KEGG: cph:Cpha266_0162 hypothetical protein; hypothetical protein complement(129368..130834) Pelodictyon phaeoclathratiforme BU-1 6462585 YP_002017090.1 CDS Ppha_0120 NC_011060.1 131674 133154 R hypothetical protein complement(join(131674..132684,132684..133154)) Pelodictyon phaeoclathratiforme BU-1 6462344 YP_002017091.1 CDS Ppha_0121 NC_011060.1 134281 135690 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0775 RND efflux system, outer membrane lipoprotein, NodT family; NodT family RND efflux system outer membrane lipoprotein complement(134281..135690) Pelodictyon phaeoclathratiforme BU-1 6462466 YP_002017092.1 CDS Ppha_0122 NC_011060.1 135687 138848 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0776 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(135687..138848) Pelodictyon phaeoclathratiforme BU-1 6461859 YP_002017093.1 CDS Ppha_0123 NC_011060.1 138876 140030 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_0777 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(138876..140030) Pelodictyon phaeoclathratiforme BU-1 6462230 YP_002017094.1 CDS Ppha_0124 NC_011060.1 140046 140942 R PFAM: regulatory protein TetR; KEGG: cph:Cpha266_0778 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(140046..140942) Pelodictyon phaeoclathratiforme BU-1 6461968 YP_002017095.1 CDS Ppha_0125 NC_011060.1 141278 141508 D KEGG: cph:Cpha266_1475 hypothetical protein; hypothetical protein 141278..141508 Pelodictyon phaeoclathratiforme BU-1 6462200 YP_002017096.1 CDS Ppha_0127 NC_011060.1 141808 143046 R KEGG: cph:Cpha266_0783 ATPase (AAA+ superfamily); ATPase complement(141808..143046) Pelodictyon phaeoclathratiforme BU-1 6462409 YP_002017097.1 CDS Ppha_0133 NC_011060.1 144289 145068 D KEGG: cph:Cpha266_0779 ATPase (AAA+ superfamily)-like; ATPase -like protein 144289..145068 Pelodictyon phaeoclathratiforme BU-1 6462515 YP_002017098.1 CDS Ppha_0134 NC_011060.1 145291 145542 D hypothetical protein 145291..145542 Pelodictyon phaeoclathratiforme BU-1 6461893 YP_002017099.1 CDS Ppha_0135 NC_011060.1 145548 146474 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit complement(145548..146474) Pelodictyon phaeoclathratiforme BU-1 6461252 YP_002017100.1 CDS Ppha_0136 NC_011060.1 146471 146764 R PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(146471..146764) Pelodictyon phaeoclathratiforme BU-1 6461991 YP_002017101.1 CDS Ppha_0137 NC_011060.1 146778 147641 D hypothetical protein 146778..147641 Pelodictyon phaeoclathratiforme BU-1 6462525 YP_002017102.1 CDS Ppha_0138 NC_011060.1 147647 148153 D hypothetical protein 147647..148153 Pelodictyon phaeoclathratiforme BU-1 6462278 YP_002017103.1 CDS Ppha_0139 NC_011060.1 148150 149943 D PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: ilo:IL0196 anaerobic nitric oxide reductase transcription regulator; response regulator receiver protein 148150..149943 Pelodictyon phaeoclathratiforme BU-1 6461841 YP_002017104.1 CDS Ppha_0140 NC_011060.1 150085 152454 D KEGG: nmr:Nmar_1474 hypothetical protein; hypothetical protein 150085..152454 Pelodictyon phaeoclathratiforme BU-1 6460964 YP_002017105.1 CDS Ppha_0142 NC_011060.1 152799 152960 R KEGG: cph:Cpha266_0773 hypothetical protein; hypothetical protein complement(152799..152960) Pelodictyon phaeoclathratiforme BU-1 6461473 YP_002017106.1 CDS Ppha_0143 NC_011060.1 153224 154531 D KEGG: cph:Cpha266_0774 hypothetical protein; hypothetical protein 153224..154531 Pelodictyon phaeoclathratiforme BU-1 6463798 YP_002017107.1 CDS Ppha_0144 NC_011060.1 154542 154793 R PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1217 plasmid stabilization system; plasmid stabilization system complement(154542..154793) Pelodictyon phaeoclathratiforme BU-1 6462273 YP_002017108.1 CDS Ppha_0145 NC_011060.1 154820 155089 R KEGG: cph:Cpha266_1216 hypothetical protein; hypothetical protein complement(154820..155089) Pelodictyon phaeoclathratiforme BU-1 6461862 YP_002017109.1 CDS Ppha_0146 NC_011060.1 155255 155719 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cph:Cpha266_0509 transcriptional regulator, BadM/Rrf2 family; BadM/Rrf2 family transcriptional regulator 155255..155719 Pelodictyon phaeoclathratiforme BU-1 6461350 YP_002017110.1 CDS Ppha_0147 NC_011060.1 155732 156625 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 155732..156625 Pelodictyon phaeoclathratiforme BU-1 6463770 YP_002017111.1 CDS Ppha_0148 NC_011060.1 156658 157110 D PFAM: hypothetical protein-containing protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_1456 hypothetical protein-containing protein; hypothetical protein 156658..157110 Pelodictyon phaeoclathratiforme BU-1 6462401 YP_002017112.1 CDS Ppha_0149 NC_011060.1 157132 158760 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 157132..158760 Pelodictyon phaeoclathratiforme BU-1 6461638 YP_002017113.1 CDS Ppha_0151 NC_011060.1 159156 159569 R PFAM: PilT protein domain protein; KEGG: cch:Cag_1433 possible NtrR protein; PilT protein domain-containing protein complement(159156..159569) Pelodictyon phaeoclathratiforme BU-1 6462526 YP_002017114.1 CDS Ppha_0152 NC_011060.1 159566 159826 R KEGG: rpd:RPD_2062 SpoVT/AbrB-like; SpoVT/AbrB-like protein complement(159566..159826) Pelodictyon phaeoclathratiforme BU-1 6462499 YP_002017115.1 CDS Ppha_0154 NC_011060.1 160323 160454 R hypothetical protein complement(160323..160454) Pelodictyon phaeoclathratiforme BU-1 6461098 YP_002017116.1 CDS Ppha_0155 NC_011060.1 160528 160878 D PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0606 hypothetical protein; hypothetical protein 160528..160878 Pelodictyon phaeoclathratiforme BU-1 6462375 YP_002017117.1 CDS Ppha_0156 NC_011060.1 160875 161159 D KEGG: cch:Cag_1578 hypothetical protein; hypothetical protein 160875..161159 Pelodictyon phaeoclathratiforme BU-1 6461175 YP_002017118.1 CDS Ppha_0157 NC_011060.1 161440 161769 D PFAM: DNA polymerase beta domain protein region; KEGG: cch:Cag_0015 hypothetical protein; DNA polymerase beta domain-containing protein 161440..161769 Pelodictyon phaeoclathratiforme BU-1 6462274 YP_002017119.1 CDS Ppha_0158 NC_011060.1 161762 161902 D KEGG: cch:Cag_1579 hypothetical protein; hypothetical protein 161762..161902 Pelodictyon phaeoclathratiforme BU-1 6462388 YP_002017120.1 CDS Ppha_0159 NC_011060.1 161971 162198 D KEGG: gur:Gura_3207 hypothetical protein; hypothetical protein 161971..162198 Pelodictyon phaeoclathratiforme BU-1 6462095 YP_002017121.1 CDS Ppha_0161 NC_011060.1 162641 162901 D PFAM: protein of unknown function UPF0175; KEGG: cph:Cpha266_0647 hypothetical protein; hypothetical protein 162641..162901 Pelodictyon phaeoclathratiforme BU-1 6462523 YP_002017122.1 CDS Ppha_0162 NC_011060.1 162885 163367 D KEGG: cph:Cpha266_0648 hypothetical protein; hypothetical protein 162885..163367 Pelodictyon phaeoclathratiforme BU-1 6462067 YP_002017123.1 CDS Ppha_0164 NC_011060.1 164076 164399 R PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1818 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(164076..164399) Pelodictyon phaeoclathratiforme BU-1 6462269 YP_002017124.1 CDS Ppha_0165 NC_011060.1 164392 164766 R PFAM: protein of unknown function DUF1044; KEGG: plt:Plut_1817 hypothetical protein; hypothetical protein complement(164392..164766) Pelodictyon phaeoclathratiforme BU-1 6461598 YP_002017125.1 CDS Ppha_0167 NC_011060.1 165715 166158 D KEGG: vei:Veis_3132 hypothetical protein; hypothetical protein 165715..166158 Pelodictyon phaeoclathratiforme BU-1 6461990 YP_002017126.1 CDS Ppha_0168 NC_011060.1 166155 166922 D PFAM: Domain of unknown function DUF1828; Domain of unknown function DUF1829; KEGG: vei:Veis_3133 Lj965 prophage protein; hypothetical protein 166155..166922 Pelodictyon phaeoclathratiforme BU-1 6460959 YP_002017127.1 CDS pheS NC_011060.1 168193 169221 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(168193..169221) Pelodictyon phaeoclathratiforme BU-1 6461941 YP_002017128.1 CDS rplT NC_011060.1 169240 169587 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(169240..169587) Pelodictyon phaeoclathratiforme BU-1 6461497 YP_002017129.1 CDS rpmI NC_011060.1 169614 169808 R PFAM: ribosomal protein L35; KEGG: cch:Cag_1713 50S ribosomal protein L35; 50S ribosomal protein L35 complement(169614..169808) Pelodictyon phaeoclathratiforme BU-1 6462364 YP_002017130.1 CDS infC NC_011060.1 169858 170490 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(169858..170490) Pelodictyon phaeoclathratiforme BU-1 6461981 YP_002017131.1 CDS thrS NC_011060.1 170514 172487 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(170514..172487) Pelodictyon phaeoclathratiforme BU-1 6461697 YP_002017132.1 CDS Ppha_0177 NC_011060.1 172665 174071 R TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: cch:Cag_1716 chlorophyllide reductase subunit Z; chlorophyllide reductase subunit Z complement(172665..174071) Pelodictyon phaeoclathratiforme BU-1 6461136 YP_002017133.1 CDS Ppha_0178 NC_011060.1 174094 175869 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2499 glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 complement(174094..175869) Pelodictyon phaeoclathratiforme BU-1 6462179 YP_002017134.1 CDS Ppha_0179 NC_011060.1 175893 177341 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(175893..177341) Pelodictyon phaeoclathratiforme BU-1 6462296 YP_002017135.1 CDS Ppha_0180 NC_011060.1 177455 177655 R hypothetical protein complement(177455..177655) Pelodictyon phaeoclathratiforme BU-1 6462199 YP_002017136.1 CDS Ppha_0181 NC_011060.1 177788 178441 D PFAM: protein of unknown function DUF1016; KEGG: pna:Pnap_0993 protein of unknown function DUF1016; hypothetical protein 177788..178441 Pelodictyon phaeoclathratiforme BU-1 6462594 YP_002017137.1 CDS Ppha_0182 NC_011060.1 178529 178879 D TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_3866 prevent-host-death family protein; prevent-host-death family protein 178529..178879 Pelodictyon phaeoclathratiforme BU-1 6461431 YP_002017138.1 CDS Ppha_0183 NC_011060.1 179090 179551 D PFAM: protein of unknown function DUF1526; KEGG: gur:Gura_4147 protein of unknown function DUF1526; hypothetical protein 179090..179551 Pelodictyon phaeoclathratiforme BU-1 6461028 YP_002017139.1 CDS Ppha_0184 NC_011060.1 179610 180536 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit complement(179610..180536) Pelodictyon phaeoclathratiforme BU-1 6461234 YP_002017140.1 CDS Ppha_0185 NC_011060.1 180533 180826 R PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(180533..180826) Pelodictyon phaeoclathratiforme BU-1 6461054 YP_002017141.1 CDS Ppha_0187 NC_011060.1 181743 181970 D TIGRFAM: prevent-host-death family protein; KEGG: gur:Gura_3866 prevent-host-death family protein; prevent-host-death family protein 181743..181970 Pelodictyon phaeoclathratiforme BU-1 6461706 YP_002017142.1 CDS Ppha_0188 NC_011060.1 181976 182353 D PFAM: PilT protein domain protein; KEGG: gur:Gura_3865 PilT protein domain protein; PilT protein domain-containing protein 181976..182353 Pelodictyon phaeoclathratiforme BU-1 6460895 YP_002017143.1 CDS Ppha_0189 NC_011060.1 182595 184799 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pau:PA14_28840 helicase; DEAD/DEAH box helicase complement(182595..184799) Pelodictyon phaeoclathratiforme BU-1 6461975 YP_002017144.1 CDS Ppha_0190 NC_011060.1 184780 186126 R KEGG: pmy:Pmen_3425 hypothetical protein; hypothetical protein complement(184780..186126) Pelodictyon phaeoclathratiforme BU-1 6460998 YP_002017145.1 CDS Ppha_0191 NC_011060.1 186123 190157 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: psa:PST_3463 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(186123..190157) Pelodictyon phaeoclathratiforme BU-1 6462574 YP_002017146.1 CDS Ppha_0192 NC_011060.1 190482 190724 R KEGG: gur:Gura_3956 hypothetical protein; hypothetical protein complement(190482..190724) Pelodictyon phaeoclathratiforme BU-1 6462495 YP_002017147.1 CDS Ppha_0193 NC_011060.1 190736 191005 R KEGG: gur:Gura_3957 hypothetical protein; hypothetical protein complement(190736..191005) Pelodictyon phaeoclathratiforme BU-1 6461663 YP_002017148.1 CDS Ppha_0194 NC_011060.1 191173 191994 R PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: cph:Cpha266_2495 ribonuclease III; Ribonuclease III complement(191173..191994) Pelodictyon phaeoclathratiforme BU-1 6461840 YP_002017149.1 CDS Ppha_0195 NC_011060.1 192005 193258 R TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cch:Cag_1660 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(192005..193258) Pelodictyon phaeoclathratiforme BU-1 6462178 YP_002017150.1 CDS acpP NC_011060.1 193309 193548 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(193309..193548) Pelodictyon phaeoclathratiforme BU-1 6462358 YP_002017151.1 CDS Ppha_0197 NC_011060.1 193636 194373 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plt:Plut_0131 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(193636..194373) Pelodictyon phaeoclathratiforme BU-1 6461983 YP_002017152.1 CDS Ppha_0198 NC_011060.1 194402 195310 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cph:Cpha266_2491 [acyl-carrier-protein] S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase complement(194402..195310) Pelodictyon phaeoclathratiforme BU-1 6462538 YP_002017153.1 CDS Ppha_0199 NC_011060.1 195348 196337 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(195348..196337) Pelodictyon phaeoclathratiforme BU-1 6461868 YP_002017154.1 CDS Ppha_0200 NC_011060.1 196440 197465 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(196440..197465) Pelodictyon phaeoclathratiforme BU-1 6461950 YP_002017155.1 CDS rpmF NC_011060.1 197494 197685 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(197494..197685) Pelodictyon phaeoclathratiforme BU-1 6462385 YP_002017156.1 CDS Ppha_0202 NC_011060.1 197704 198243 R PFAM: protein of unknown function DUF177; KEGG: cph:Cpha266_2487 protein of unknown function DUF177; hypothetical protein complement(197704..198243) Pelodictyon phaeoclathratiforme BU-1 6462419 YP_002017157.1 CDS Ppha_0203 NC_011060.1 198678 198839 D hypothetical protein 198678..198839 Pelodictyon phaeoclathratiforme BU-1 6462371 YP_002017158.1 CDS Ppha_0204 NC_011060.1 198936 200618 D TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cph:Cpha266_2478 2-isopropylmalate synthase; 2-isopropylmalate synthase 198936..200618 Pelodictyon phaeoclathratiforme BU-1 6462588 YP_002017159.1 CDS Ppha_0205 NC_011060.1 200775 201677 D PFAM: periplasmic solute binding protein; KEGG: cph:Cpha266_2476 periplasmic solute binding protein; periplasmic solute binding protein 200775..201677 Pelodictyon phaeoclathratiforme BU-1 6462437 YP_002017160.1 CDS Ppha_0206 NC_011060.1 201674 202342 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_2475 ABC transporter related; ABC transporter-like protein 201674..202342 Pelodictyon phaeoclathratiforme BU-1 6462431 YP_002017161.1 CDS Ppha_0207 NC_011060.1 202317 203138 D PFAM: ABC-3 protein; KEGG: cch:Cag_1676 ABC 3 transport family protein; ABC-3 protein 202317..203138 Pelodictyon phaeoclathratiforme BU-1 6462482 YP_002017162.1 CDS Ppha_0208 NC_011060.1 203280 203450 R KEGG: plt:Plut_0144 Ric1 protein; Ric1 protein complement(203280..203450) Pelodictyon phaeoclathratiforme BU-1 6461920 YP_002017163.1 CDS Ppha_0209 NC_011060.1 203662 203970 D KEGG: plt:Plut_0145 hypothetical protein; hypothetical protein 203662..203970 Pelodictyon phaeoclathratiforme BU-1 6461117 YP_002017164.1 CDS Ppha_0210 NC_011060.1 204073 204903 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cph:Cpha266_2470 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 204073..204903 Pelodictyon phaeoclathratiforme BU-1 6462589 YP_002017165.1 CDS Ppha_0211 NC_011060.1 204933 206276 R KEGG: cph:Cpha266_2467 hypothetical protein; hypothetical protein complement(204933..206276) Pelodictyon phaeoclathratiforme BU-1 6461960 YP_002017166.1 CDS Ppha_0212 NC_011060.1 206282 207112 R KEGG: plt:Plut_0150 delta 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(206282..207112) Pelodictyon phaeoclathratiforme BU-1 6461439 YP_002017167.1 CDS Ppha_0213 NC_011060.1 207411 207746 R PFAM: cytochrome c class I; KEGG: cch:Cag_0917 cytochrome c-555; cytochrome c class I complement(207411..207746) Pelodictyon phaeoclathratiforme BU-1 6461735 YP_002017168.1 CDS Ppha_0214 NC_011060.1 207979 208413 R PFAM: cytochrome c class I; KEGG: cph:Cpha266_2463 cytochrome c, class I; cytochrome c class I complement(207979..208413) Pelodictyon phaeoclathratiforme BU-1 6461679 YP_002017169.1 CDS Ppha_0215 NC_011060.1 208478 209929 R PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_2462 radical SAM protein; radical SAM protein complement(208478..209929) Pelodictyon phaeoclathratiforme BU-1 6461055 YP_002017170.1 CDS Ppha_0216 NC_011060.1 209938 210603 R KEGG: cch:Cag_0105 hypothetical protein; hypothetical protein complement(209938..210603) Pelodictyon phaeoclathratiforme BU-1 6462387 YP_002017171.1 CDS Ppha_0217 NC_011060.1 210624 211763 R PFAM: aminotransferase class V; KEGG: cph:Cpha266_2460 serine--glyoxylate transaminase; serine--glyoxylate transaminase complement(210624..211763) Pelodictyon phaeoclathratiforme BU-1 6461888 YP_002017172.1 CDS Ppha_0218 NC_011060.1 211781 212884 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(211781..212884) Pelodictyon phaeoclathratiforme BU-1 6462556 YP_002017173.1 CDS Ppha_0219 NC_011060.1 212893 213249 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: plt:Plut_0157 YajC; preprotein translocase subunit YajC complement(212893..213249) Pelodictyon phaeoclathratiforme BU-1 6461171 YP_002017174.1 CDS Ppha_0220 NC_011060.1 213327 214379 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease complement(213327..214379) Pelodictyon phaeoclathratiforme BU-1 6462319 YP_002017175.1 CDS Ppha_0221 NC_011060.1 214404 214631 D KEGG: cch:Cag_0110 hypothetical protein; hypothetical protein 214404..214631 Pelodictyon phaeoclathratiforme BU-1 6461877 YP_002017176.1 CDS Ppha_0222 NC_011060.1 214732 215730 D PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cph:Cpha266_2455 ATPase associated with various cellular activities, AAA_3; ATPase 214732..215730 Pelodictyon phaeoclathratiforme BU-1 6462262 YP_002017177.1 CDS Ppha_0223 NC_011060.1 215746 216654 D PFAM: von Willebrand factor A; protein of unknown function DUF58; KEGG: cph:Cpha266_2454 protein of unknown function DUF58; hypothetical protein 215746..216654 Pelodictyon phaeoclathratiforme BU-1 6461790 YP_002017178.1 CDS Ppha_0224 NC_011060.1 216713 217606 D KEGG: cch:Cag_0113 hypothetical protein; hypothetical protein 216713..217606 Pelodictyon phaeoclathratiforme BU-1 6462714 YP_002017179.1 CDS Ppha_0225 NC_011060.1 217743 218207 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; peptidoglycan-associated lipoprotein complement(217743..218207) Pelodictyon phaeoclathratiforme BU-1 6461762 YP_002017180.1 CDS Ppha_0226 NC_011060.1 218314 219063 R PFAM: surface antigen msp4 family protein; KEGG: cph:Cpha266_0396 hypothetical protein; surface antigen msp4 family protein complement(218314..219063) Pelodictyon phaeoclathratiforme BU-1 6462170 YP_002017181.1 CDS Ppha_0227 NC_011060.1 219500 219664 D hypothetical protein 219500..219664 Pelodictyon phaeoclathratiforme BU-1 6461475 YP_002017182.1 CDS Ppha_0228 NC_011060.1 219689 220045 D PFAM: ATP-binding region ATPase domain protein; KEGG: dol:Dole_1520 PAS/PAC sensor hybrid histidine kinase; histidine kinase 219689..220045 Pelodictyon phaeoclathratiforme BU-1 6462132 YP_002017183.1 CDS Ppha_0229 NC_011060.1 220139 223555 D KEGG: cch:Cag_0563 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; MCP methyltransferase/methylesterase 220139..223555 Pelodictyon phaeoclathratiforme BU-1 6460940 YP_002017184.1 CDS Ppha_0230 NC_011060.1 223552 224529 D KEGG: cch:Cag_0562 PAS/PAC sensor protein; PAS/PAC sensor protein 223552..224529 Pelodictyon phaeoclathratiforme BU-1 6461863 YP_002017185.1 CDS Ppha_0231 NC_011060.1 225264 225410 D KEGG: cph:Cpha266_0794 hypothetical protein; hypothetical protein 225264..225410 Pelodictyon phaeoclathratiforme BU-1 6461710 YP_002017186.1 CDS Ppha_0232 NC_011060.1 225586 226155 D KEGG: cch:Cag_1035 hypothetical protein; hypothetical protein 225586..226155 Pelodictyon phaeoclathratiforme BU-1 6461588 YP_002017187.1 CDS Ppha_0233 NC_011060.1 226218 226508 D KEGG: cch:Cag_1041 hypothetical protein; hypothetical protein 226218..226508 Pelodictyon phaeoclathratiforme BU-1 6462759 YP_002017188.1 CDS Ppha_0234 NC_011060.1 226631 227092 D KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit 226631..227092 Pelodictyon phaeoclathratiforme BU-1 6460866 YP_002017189.1 CDS Ppha_0235 NC_011060.1 227089 228186 D PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1356 glycosyl transferase, group 1; group 1 glycosyl transferase 227089..228186 Pelodictyon phaeoclathratiforme BU-1 6462327 YP_002017190.1 CDS Ppha_0236 NC_011060.1 228342 228824 D KEGG: cph:Cpha266_1270 hypothetical protein; hypothetical protein 228342..228824 Pelodictyon phaeoclathratiforme BU-1 6461577 YP_002017191.1 CDS Ppha_0238 NC_011060.1 229159 231522 D PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like; hypothetical protein 229159..231522 Pelodictyon phaeoclathratiforme BU-1 6460882 YP_002017192.1 CDS Ppha_0239 NC_011060.1 231624 231995 D KEGG: cph:Cpha266_2281 hypothetical protein; hypothetical protein 231624..231995 Pelodictyon phaeoclathratiforme BU-1 6461061 YP_002017193.1 CDS Ppha_0240 NC_011060.1 232008 232520 D KEGG: cph:Cpha266_0521 hypothetical protein; hypothetical protein 232008..232520 Pelodictyon phaeoclathratiforme BU-1 6462954 YP_002017194.1 CDS Ppha_0241 NC_011060.1 232579 233574 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: plt:Plut_1552 thiosulphate-binding protein; sulfate ABC transporter, periplasmic sulfate-binding protein 232579..233574 Pelodictyon phaeoclathratiforme BU-1 6462609 YP_002017195.1 CDS Ppha_0242 NC_011060.1 233664 234674 D PFAM: von Willebrand factor A; KEGG: cph:Cpha266_2452 von Willebrand factor, type A; von Willebrand factor A 233664..234674 Pelodictyon phaeoclathratiforme BU-1 6463767 YP_002017196.1 CDS Ppha_0243 NC_011060.1 234715 235746 D PFAM: von Willebrand factor A; KEGG: cph:Cpha266_2451 von Willebrand factor, type A; von Willebrand factor A 234715..235746 Pelodictyon phaeoclathratiforme BU-1 6461632 YP_002017197.1 CDS Ppha_0244 NC_011060.1 235854 236153 D KEGG: cch:Cag_1877 hypothetical protein; hypothetical protein 235854..236153 Pelodictyon phaeoclathratiforme BU-1 6463467 YP_002017198.1 CDS Ppha_0245 NC_011060.1 236184 237509 D PFAM: AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2449 AAA ATPase, central domain protein; ATPase AAA 236184..237509 Pelodictyon phaeoclathratiforme BU-1 6462596 YP_002017199.1 CDS Ppha_0246 NC_011060.1 237621 240362 D KEGG: cph:Cpha266_1202 hypothetical protein; hypothetical protein 237621..240362 Pelodictyon phaeoclathratiforme BU-1 6462147 YP_002017200.1 CDS Ppha_0247 NC_011060.1 240564 241814 D KEGG: gvi:gll1120 unknown protein; hypothetical protein 240564..241814 Pelodictyon phaeoclathratiforme BU-1 6462614 YP_002017201.1 CDS Ppha_0248 NC_011060.1 241819 244200 D PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: cch:Cag_1875 hypothetical protein; hypothetical protein 241819..244200 Pelodictyon phaeoclathratiforme BU-1 6461996 YP_002017202.1 CDS Ppha_0249 NC_011060.1 244339 244872 D KEGG: cph:Cpha266_2448 hypothetical protein; hypothetical protein 244339..244872 Pelodictyon phaeoclathratiforme BU-1 6461503 YP_002017203.1 CDS gatB NC_011060.1 244949 246376 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 244949..246376 Pelodictyon phaeoclathratiforme BU-1 6462468 YP_002017204.1 CDS Ppha_0251 NC_011060.1 246381 246638 R PFAM: Exonuclease VII small subunit; KEGG: cph:Cpha266_2446 exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit complement(246381..246638) Pelodictyon phaeoclathratiforme BU-1 6462218 YP_002017205.1 CDS obgE NC_011060.1 246711 247724 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 246711..247724 Pelodictyon phaeoclathratiforme BU-1 6460929 YP_002017206.1 CDS Ppha_0253 NC_011060.1 247727 248194 D catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate; acetyltransferase 247727..248194 Pelodictyon phaeoclathratiforme BU-1 6462116 YP_002017207.1 CDS Ppha_0254 NC_011060.1 248225 248491 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cph:Cpha266_2443 phosphotransferase system, phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 248225..248491 Pelodictyon phaeoclathratiforme BU-1 6463530 YP_002017208.1 CDS Ppha_0255 NC_011060.1 248557 249633 D PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2442 glycosyl transferase, group 1; group 1 glycosyl transferase 248557..249633 Pelodictyon phaeoclathratiforme BU-1 6461030 YP_002017209.1 CDS Ppha_0256 NC_011060.1 249633 250472 D PFAM: glycosyl transferase family 2; KEGG: plt:Plut_0169 glycosyl transferase; family 2 glycosyl transferase 249633..250472 Pelodictyon phaeoclathratiforme BU-1 6462557 YP_002017210.1 CDS Ppha_0257 NC_011060.1 250495 251061 D KEGG: cch:Cag_1865 hypothetical protein; hypothetical protein 250495..251061 Pelodictyon phaeoclathratiforme BU-1 6462183 YP_002017211.1 CDS Ppha_0258 NC_011060.1 251042 252208 D PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1863 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 251042..252208 Pelodictyon phaeoclathratiforme BU-1 6462239 YP_002017212.1 CDS Ppha_0259 NC_011060.1 252205 253701 D PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_1862 polysaccharide efflux transporter; polysaccharide biosynthesis protein 252205..253701 Pelodictyon phaeoclathratiforme BU-1 6461794 YP_002017213.1 CDS Ppha_0260 NC_011060.1 253706 256162 D KEGG: cch:Cag_1857 hypothetical protein; hypothetical protein 253706..256162 Pelodictyon phaeoclathratiforme BU-1 6461892 YP_002017214.1 CDS Ppha_0261 NC_011060.1 256608 257066 R PFAM: HipA domain protein; KEGG: eca:ECA0127 hypothetical protein; HipA domain-containing protein complement(256608..257066) Pelodictyon phaeoclathratiforme BU-1 6462328 YP_002017215.1 CDS Ppha_0262 NC_011060.1 257063 257392 R SMART: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein; XRE family transcriptional regulator complement(257063..257392) Pelodictyon phaeoclathratiforme BU-1 6461612 YP_002017216.1 CDS Ppha_0263 NC_011060.1 257608 258849 D KEGG: cch:Cag_0509 hypothetical protein; hypothetical protein 257608..258849 Pelodictyon phaeoclathratiforme BU-1 6461500 YP_002017217.1 CDS Ppha_0264 NC_011060.1 258930 259172 D PFAM: SpoVT/AbrB domain protein; KEGG: rrs:RoseRS_3308 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE 258930..259172 Pelodictyon phaeoclathratiforme BU-1 6461855 YP_002017218.1 CDS Ppha_0265 NC_011060.1 259177 259512 D PFAM: PemK family protein; KEGG: cch:Cag_0429 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin MazF 259177..259512 Pelodictyon phaeoclathratiforme BU-1 6461227 YP_002017219.1 CDS Ppha_0266 NC_011060.1 259628 260872 R PFAM: HipA domain protein; KEGG: hch:HCH_01139 uncharacterized protein related to capsule biosynthesis enzyme; HipA domain-containing protein complement(259628..260872) Pelodictyon phaeoclathratiforme BU-1 6462366 YP_002017220.1 CDS Ppha_0267 NC_011060.1 260859 261158 R PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_3064 hypothetical protein; XRE family transcriptional regulator complement(260859..261158) Pelodictyon phaeoclathratiforme BU-1 6461238 YP_002017221.1 CDS Ppha_0269 NC_011060.1 262356 262943 D KEGG: sus:Acid_6999 hypothetical protein; hypothetical protein 262356..262943 Pelodictyon phaeoclathratiforme BU-1 6461642 YP_002017222.1 CDS Ppha_0270 NC_011060.1 263277 266066 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tle:Tlet_1717 radical SAM protein; radical SAM protein 263277..266066 Pelodictyon phaeoclathratiforme BU-1 6462300 YP_002017223.1 CDS Ppha_0271 NC_011060.1 266083 266625 D PFAM: NUDIX hydrolase; KEGG: chu:CHU_2826 pyrophosphohydrolase related protein; NUDIX hydrolase 266083..266625 Pelodictyon phaeoclathratiforme BU-1 6462565 YP_002017224.1 CDS Ppha_0272 NC_011060.1 266707 267414 R KEGG: mag:amb1154 hypothetical protein; hypothetical protein complement(266707..267414) Pelodictyon phaeoclathratiforme BU-1 6461615 YP_002017225.1 CDS Ppha_0273 NC_011060.1 267515 268543 R SMART: TIR protein; KEGG: fal:FRAAL5311 hypothetical protein; transmembrane receptor activity; TIR protein complement(267515..268543) Pelodictyon phaeoclathratiforme BU-1 6461616 YP_002017226.1 CDS Ppha_0274 NC_011060.1 269156 272269 D KEGG: rba:RB452 hypothetical protein; hypothetical protein 269156..272269 Pelodictyon phaeoclathratiforme BU-1 6461678 YP_002017227.1 CDS Ppha_0275 NC_011060.1 272269 272877 D KEGG: rba:RB453 hypothetical protein; hypothetical protein 272269..272877 Pelodictyon phaeoclathratiforme BU-1 6460978 YP_002017228.1 CDS Ppha_0277 NC_011060.1 274166 275878 D PFAM: transposase IS4 family protein; KEGG: amt:Amet_0623 transposase, IS4; transposase IS4 family protein 274166..275878 Pelodictyon phaeoclathratiforme BU-1 6461911 YP_002017229.1 CDS Ppha_0278 NC_011060.1 277865 280612 D PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rba:RB460 probable DEAH ATP-dependent helicase; helicase domain-containing protein 277865..280612 Pelodictyon phaeoclathratiforme BU-1 6462456 YP_002017230.1 CDS Ppha_0279 NC_011060.1 280736 281038 R PFAM: plasmid stabilization system; KEGG: cph:Cpha266_0252 hypothetical protein; plasmid stabilization system complement(280736..281038) Pelodictyon phaeoclathratiforme BU-1 6462173 YP_002017231.1 CDS Ppha_0280 NC_011060.1 281035 281265 R TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: mhu:Mhun_0713 hypothetical protein; addiction module protein complement(281035..281265) Pelodictyon phaeoclathratiforme BU-1 6461904 YP_002017232.1 CDS Ppha_0281 NC_011060.1 281508 281771 R KEGG: tde:TDE2749 hypothetical protein; hypothetical protein complement(281508..281771) Pelodictyon phaeoclathratiforme BU-1 6461946 YP_002017233.1 CDS Ppha_0283 NC_011060.1 282256 282531 R KEGG: gur:Gura_3064 hypothetical protein; hypothetical protein complement(282256..282531) Pelodictyon phaeoclathratiforme BU-1 6461157 YP_002017234.1 CDS rpsL NC_011060.1 283065 283475 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 283065..283475 Pelodictyon phaeoclathratiforme BU-1 6461589 YP_002017235.1 CDS Ppha_0285 NC_011060.1 283506 283973 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 283506..283973 Pelodictyon phaeoclathratiforme BU-1 6461734 YP_002017236.1 CDS Ppha_0286 NC_011060.1 284014 286128 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 284014..286128 Pelodictyon phaeoclathratiforme BU-1 6461900 YP_002017237.1 CDS Ppha_0287 NC_011060.1 286197 287378 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 286197..287378 Pelodictyon phaeoclathratiforme BU-1 6461535 YP_002017238.1 CDS rpsJ NC_011060.1 287456 287767 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 287456..287767 Pelodictyon phaeoclathratiforme BU-1 6461084 YP_002017239.1 CDS rplC NC_011060.1 287789 288418 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 287789..288418 Pelodictyon phaeoclathratiforme BU-1 6461133 YP_002017240.1 CDS rplD NC_011060.1 288426 289064 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 288426..289064 Pelodictyon phaeoclathratiforme BU-1 6462038 YP_002017241.1 CDS rplW NC_011060.1 289096 289407 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 289096..289407 Pelodictyon phaeoclathratiforme BU-1 6462153 YP_002017242.1 CDS rplB NC_011060.1 289484 290278 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 289484..290278 Pelodictyon phaeoclathratiforme BU-1 6462304 YP_002017243.1 CDS rpsS NC_011060.1 290312 290611 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 290312..290611 Pelodictyon phaeoclathratiforme BU-1 6461951 YP_002017244.1 CDS rplV NC_011060.1 290642 291001 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 290642..291001 Pelodictyon phaeoclathratiforme BU-1 6462261 YP_002017245.1 CDS rpsC NC_011060.1 291018 291767 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 291018..291767 Pelodictyon phaeoclathratiforme BU-1 6461882 YP_002017246.1 CDS rplP NC_011060.1 291812 292231 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 291812..292231 Pelodictyon phaeoclathratiforme BU-1 6461760 YP_002017247.1 CDS Ppha_0297 NC_011060.1 292266 292472 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 292266..292472 Pelodictyon phaeoclathratiforme BU-1 6462135 YP_002017248.1 CDS rpsQ NC_011060.1 292520 292804 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 292520..292804 Pelodictyon phaeoclathratiforme BU-1 6461327 YP_002017249.1 CDS rplN NC_011060.1 292843 293211 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 292843..293211 Pelodictyon phaeoclathratiforme BU-1 6462240 YP_002017250.1 CDS rplX NC_011060.1 293329 293571 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 293329..293571 Pelodictyon phaeoclathratiforme BU-1 6462053 YP_002017251.1 CDS rplE NC_011060.1 293633 294220 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 293633..294220 Pelodictyon phaeoclathratiforme BU-1 6461181 YP_002017252.1 CDS rpsN NC_011060.1 294237 294506 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 294237..294506 Pelodictyon phaeoclathratiforme BU-1 6461564 YP_002017253.1 CDS rpsH NC_011060.1 294571 294966 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 294571..294966 Pelodictyon phaeoclathratiforme BU-1 6461449 YP_002017254.1 CDS rplF NC_011060.1 294995 295534 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 294995..295534 Pelodictyon phaeoclathratiforme BU-1 6462019 YP_002017255.1 CDS rplR NC_011060.1 295592 295951 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 295592..295951 Pelodictyon phaeoclathratiforme BU-1 6461275 YP_002017256.1 CDS rpsE NC_011060.1 295975 296493 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 295975..296493 Pelodictyon phaeoclathratiforme BU-1 6462583 YP_002017257.1 CDS rpmD NC_011060.1 296496 296696 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 296496..296696 Pelodictyon phaeoclathratiforme BU-1 6462561 YP_002017258.1 CDS rplO NC_011060.1 296731 297285 D late assembly protein; 50S ribosomal protein L15 296731..297285 Pelodictyon phaeoclathratiforme BU-1 6461540 YP_002017259.1 CDS secY NC_011060.1 297304 298635 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 297304..298635 Pelodictyon phaeoclathratiforme BU-1 6462216 YP_002017260.1 CDS Ppha_0310 NC_011060.1 298646 299443 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pvi:Cvib_0267 methionine aminopeptidase, type I; methionine aminopeptidase 298646..299443 Pelodictyon phaeoclathratiforme BU-1 6462026 YP_002017261.1 CDS infA NC_011060.1 299483 299701 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 299483..299701 Pelodictyon phaeoclathratiforme BU-1 6462568 YP_002017262.1 CDS rpmJ NC_011060.1 299818 299934 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 299818..299934 Pelodictyon phaeoclathratiforme BU-1 6461747 YP_002017263.1 CDS rpsM NC_011060.1 299968 300345 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 299968..300345 Pelodictyon phaeoclathratiforme BU-1 6461625 YP_002017264.1 CDS Ppha_0314 NC_011060.1 300394 300777 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 300394..300777 Pelodictyon phaeoclathratiforme BU-1 6462260 YP_002017265.1 CDS rpsD NC_011060.1 300815 301426 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 300815..301426 Pelodictyon phaeoclathratiforme BU-1 6462177 YP_002017266.1 CDS Ppha_0316 NC_011060.1 301456 302439 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 301456..302439 Pelodictyon phaeoclathratiforme BU-1 6462527 YP_002017267.1 CDS rplQ NC_011060.1 302486 302944 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 302486..302944 Pelodictyon phaeoclathratiforme BU-1 6461193 YP_002017268.1 CDS gidB NC_011060.1 302986 303672 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(302986..303672) Pelodictyon phaeoclathratiforme BU-1 6463499 YP_002017269.1 CDS Ppha_0319 NC_011060.1 303856 304977 D PFAM: Nucleotidyl transferase; KEGG: cch:Cag_1821 mannose-1-phosphate guanylyltransferase; mannose-1-phosphate guanylyltransferase 303856..304977 Pelodictyon phaeoclathratiforme BU-1 6461482 YP_002017270.1 CDS cysS NC_011060.1 304974 306428 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(304974..306428) Pelodictyon phaeoclathratiforme BU-1 6460915 YP_002017271.1 CDS engB NC_011060.1 306573 307154 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 306573..307154 Pelodictyon phaeoclathratiforme BU-1 6460876 YP_002017272.1 CDS Ppha_0322 NC_011060.1 307166 308470 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 307166..308470 Pelodictyon phaeoclathratiforme BU-1 6463689 YP_002017273.1 CDS Ppha_0323 NC_011060.1 308489 308809 D PFAM: protein of unknown function DUF77; KEGG: plt:Plut_0214 protein of unknown function DUF77; hypothetical protein 308489..308809 Pelodictyon phaeoclathratiforme BU-1 6460907 YP_002017274.1 CDS Ppha_0324 NC_011060.1 308907 310169 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit N 308907..310169 Pelodictyon phaeoclathratiforme BU-1 6462049 YP_002017275.1 CDS Ppha_0325 NC_011060.1 310211 311818 D light-independent reduction of protochlorophyllide to form chlorophyllide a; light-independent protochlorophyllide reductase subunit B 310211..311818 Pelodictyon phaeoclathratiforme BU-1 6462308 YP_002017276.1 CDS chlL NC_011060.1 311852 312679 D light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production; protochlorophyllide reductase iron-sulfur ATP-binding protein 311852..312679 Pelodictyon phaeoclathratiforme BU-1 6461118 YP_002017277.1 CDS Ppha_0327 NC_011060.1 312709 313326 D KEGG: sfu:Sfum_2080 hypothetical protein; hypothetical protein 312709..313326 Pelodictyon phaeoclathratiforme BU-1 6462373 YP_002017278.1 CDS Ppha_0328 NC_011060.1 313416 313988 R TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cch:Cag_1810 bacteriochlorophyll 4-vinyl reductase; bacteriochlorophyll 4-vinyl reductase complement(313416..313988) Pelodictyon phaeoclathratiforme BU-1 6461150 YP_002017279.1 CDS Ppha_0329 NC_011060.1 314012 315130 R KEGG: cch:Cag_1809 hypothetical protein; hypothetical protein complement(314012..315130) Pelodictyon phaeoclathratiforme BU-1 6460854 YP_002017280.1 CDS Ppha_0330 NC_011060.1 315267 316736 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 315267..316736 Pelodictyon phaeoclathratiforme BU-1 6460881 YP_002017281.1 CDS Ppha_0331 NC_011060.1 316745 317335 D TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: plt:Plut_0221 histidinol-phosphate phosphatase; histidinol-phosphate phosphatase family protein 316745..317335 Pelodictyon phaeoclathratiforme BU-1 6463807 YP_002017282.1 CDS Ppha_0332 NC_011060.1 317372 318496 D KEGG: plt:Plut_0222 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 317372..318496 Pelodictyon phaeoclathratiforme BU-1 6460938 YP_002017283.1 CDS Ppha_0333 NC_011060.1 318524 321166 D KEGG: cch:Cag_0197 hypothetical protein; hypothetical protein 318524..321166 Pelodictyon phaeoclathratiforme BU-1 6462612 YP_002017284.1 CDS Ppha_0334 NC_011060.1 321175 321972 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 321175..321972 Pelodictyon phaeoclathratiforme BU-1 6463032 YP_002017285.1 CDS Ppha_0335 NC_011060.1 321992 322975 D PFAM: ROK family protein; KEGG: pvi:Cvib_0291 ROK family protein; ROK family protein 321992..322975 Pelodictyon phaeoclathratiforme BU-1 6460883 YP_002017286.1 CDS Ppha_0336 NC_011060.1 322994 323686 D PFAM: phosphoribosyltransferase; KEGG: plt:Plut_0226 competence protein; phosphoribosyltransferase 322994..323686 Pelodictyon phaeoclathratiforme BU-1 6462297 YP_002017287.1 CDS Ppha_0337 NC_011060.1 323694 324437 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 323694..324437 Pelodictyon phaeoclathratiforme BU-1 6460886 YP_002017288.1 CDS Ppha_0338 NC_011060.1 324468 325559 D PFAM: protein of unknown function UPF0118; KEGG: cch:Cag_0203 hypothetical protein; hypothetical protein 324468..325559 Pelodictyon phaeoclathratiforme BU-1 6460988 YP_002017289.1 CDS Ppha_0339 NC_011060.1 325641 326063 R catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase complement(325641..326063) Pelodictyon phaeoclathratiforme BU-1 6463271 YP_002017290.1 CDS Ppha_0340 NC_011060.1 326459 327826 R PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2634 transposase, IS4 family protein; transposase IS4 family protein complement(326459..327826) Pelodictyon phaeoclathratiforme BU-1 6462148 YP_002017291.1 CDS Ppha_0341 NC_011060.1 328641 330440 D KEGG: sph:MGAS10270_Spy0033 hypothetical protein; hypothetical protein 328641..330440 Pelodictyon phaeoclathratiforme BU-1 6461876 YP_002017292.1 CDS Ppha_0342 NC_011060.1 330437 332182 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpe:RPE_0561 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 330437..332182 Pelodictyon phaeoclathratiforme BU-1 6460937 YP_002017293.1 CDS Ppha_0343 NC_011060.1 332186 332689 D hypothetical protein 332186..332689 Pelodictyon phaeoclathratiforme BU-1 6462331 YP_002017294.1 CDS Ppha_0344 NC_011060.1 332693 335374 D PFAM: type III restriction protein res subunit; KEGG: neu:NE2306 hypothetical protein; type III restriction protein res subunit 332693..335374 Pelodictyon phaeoclathratiforme BU-1 6462248 YP_002017295.1 CDS Ppha_0345 NC_011060.1 335952 336332 D KEGG: rba:RB11248 similar to protein-S-isoprenylcysteine O-methyltransferase; protein-S-isoprenylcysteine O-methyltransferase-like protein 335952..336332 Pelodictyon phaeoclathratiforme BU-1 6461557 YP_002017296.1 CDS Ppha_0348 NC_011060.1 337395 337616 D TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cch:Cag_0032 hypothetical protein; addiction module protein 337395..337616 Pelodictyon phaeoclathratiforme BU-1 6462384 YP_002017297.1 CDS Ppha_0349 NC_011060.1 337613 337849 D KEGG: gsu:GSU0055 hypothetical protein; hypothetical protein 337613..337849 Pelodictyon phaeoclathratiforme BU-1 6462517 YP_002017298.1 CDS Ppha_0350 NC_011060.1 337865 339013 R PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_2339 transposase, IS4 family protein; transposase IS4 family protein complement(337865..339013) Pelodictyon phaeoclathratiforme BU-1 6462514 YP_002017299.1 CDS Ppha_0351 NC_011060.1 339338 339601 D KEGG: tcx:Tcr_1422 hypothetical protein; hypothetical protein 339338..339601 Pelodictyon phaeoclathratiforme BU-1 6462443 YP_002017300.1 CDS Ppha_0352 NC_011060.1 339588 340382 D KEGG: tcx:Tcr_1422 hypothetical protein; hypothetical protein 339588..340382 Pelodictyon phaeoclathratiforme BU-1 6461174 YP_002017301.1 CDS Ppha_0353 NC_011060.1 340485 341726 D hypothetical protein 340485..341726 Pelodictyon phaeoclathratiforme BU-1 6461506 YP_002017302.1 CDS Ppha_0354 NC_011060.1 342033 343055 D SMART: HNH nuclease; KEGG: dra:DR_1533 hypothetical protein; HNH nuclease 342033..343055 Pelodictyon phaeoclathratiforme BU-1 6461574 YP_002017303.1 CDS Ppha_0355 NC_011060.1 343198 343593 D hypothetical protein 343198..343593 Pelodictyon phaeoclathratiforme BU-1 6460946 YP_002017304.1 CDS Ppha_0356 NC_011060.1 343736 344158 D PFAM: PspC domain protein; KEGG: aby:ABAYE0373 hypothetical protein; phage shock protein C, PspC 343736..344158 Pelodictyon phaeoclathratiforme BU-1 6462463 YP_002017305.1 CDS Ppha_0358 NC_011060.1 344352 344528 D KEGG: mar:MAE_48580 hypothetical protein; hypothetical protein 344352..344528 Pelodictyon phaeoclathratiforme BU-1 6462245 YP_002017306.1 CDS Ppha_0360 NC_011060.1 345090 346454 D KEGG: swo:Swol_0601 signal transduction histidine kinase-like protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 345090..346454 Pelodictyon phaeoclathratiforme BU-1 6462569 YP_002017307.1 CDS Ppha_0361 NC_011060.1 346641 346943 D KEGG: cph:Cpha266_0282 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 346641..346943 Pelodictyon phaeoclathratiforme BU-1 6462403 YP_002017308.1 CDS Ppha_0362 NC_011060.1 347175 347642 D PFAM: protein of unknown function UPF0066; KEGG: ppd:Ppro_1968 protein of unknown function UPF0066; hypothetical protein 347175..347642 Pelodictyon phaeoclathratiforme BU-1 6462299 YP_002017309.1 CDS Ppha_0363 NC_011060.1 347675 347962 D KEGG: mbu:Mbur_0507 divergent AAA ATPase; ATPase AAA 347675..347962 Pelodictyon phaeoclathratiforme BU-1 6461633 YP_002017310.1 CDS Ppha_0364 NC_011060.1 348052 348498 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_0205 bacterioferritin comigratory protein, thiol peroxidase; alkyl hydroperoxide reductase complement(348052..348498) Pelodictyon phaeoclathratiforme BU-1 6461065 YP_002017311.1 CDS Ppha_0365 NC_011060.1 348949 350154 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: pvi:Cvib_0301 aminotransferase, class V; class V aminotransferase 348949..350154 Pelodictyon phaeoclathratiforme BU-1 6461209 YP_002017312.1 CDS Ppha_0366 NC_011060.1 350138 350749 D PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cph:Cpha266_2362 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein 350138..350749 Pelodictyon phaeoclathratiforme BU-1 6462241 YP_002017313.1 CDS Ppha_0367 NC_011060.1 350790 352112 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 350790..352112 Pelodictyon phaeoclathratiforme BU-1 6460871 YP_002017314.1 CDS Ppha_0368 NC_011060.1 352233 353240 D catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria; bacteriochlorophyll c synthase 352233..353240 Pelodictyon phaeoclathratiforme BU-1 6462418 YP_002017315.1 CDS Ppha_0369 NC_011060.1 353285 353998 D PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_2359 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 353285..353998 Pelodictyon phaeoclathratiforme BU-1 6462416 YP_002017316.1 CDS Ppha_0370 NC_011060.1 354008 354754 D PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2358 metallophosphoesterase; metallophosphoesterase 354008..354754 Pelodictyon phaeoclathratiforme BU-1 6462414 YP_002017317.1 CDS hisG NC_011060.1 354782 355666 D long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase 354782..355666 Pelodictyon phaeoclathratiforme BU-1 6462412 YP_002017318.1 CDS Ppha_0372 NC_011060.1 355721 356866 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2356 glycosyl transferase, family 2; family 2 glycosyl transferase 355721..356866 Pelodictyon phaeoclathratiforme BU-1 6462410 YP_002017319.1 CDS Ppha_0373 NC_011060.1 356988 357938 D PFAM: WD-40 repeat protein; KEGG: cch:Cag_0213 WD-40 repeat; WD-40 repeat-containing protein 356988..357938 Pelodictyon phaeoclathratiforme BU-1 6462407 YP_002017320.1 CDS Ppha_0374 NC_011060.1 358167 358376 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cph:Cpha266_2354 cold-shock DNA-binding protein family; cold-shock DNA-binding domain-containing protein 358167..358376 Pelodictyon phaeoclathratiforme BU-1 6462406 YP_002017321.1 CDS Ppha_0375 NC_011060.1 358552 359286 D KEGG: plt:Plut_0248 hypothetical protein; hypothetical protein 358552..359286 Pelodictyon phaeoclathratiforme BU-1 6462398 YP_002017322.1 CDS Ppha_0376 NC_011060.1 359279 360226 D KEGG: pvi:Cvib_0314 hypothetical protein; hypothetical protein 359279..360226 Pelodictyon phaeoclathratiforme BU-1 6462397 YP_002017323.1 CDS Ppha_0377 NC_011060.1 360756 360968 D KEGG: sit:TM1040_3853 hypothetical protein; hypothetical protein 360756..360968 Pelodictyon phaeoclathratiforme BU-1 6462386 YP_002017324.1 CDS Ppha_0378 NC_011060.1 361120 362841 D KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 361120..362841 Pelodictyon phaeoclathratiforme BU-1 6462383 YP_002017325.1 CDS Ppha_0379 NC_011060.1 362866 364578 D KEGG: cph:Cpha266_1748 type I secretion system ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 362866..364578 Pelodictyon phaeoclathratiforme BU-1 6462382 YP_002017326.1 CDS Ppha_0380 NC_011060.1 364612 365793 D PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1747 secretion protein HlyD family protein; secretion protein HlyD family protein 364612..365793 Pelodictyon phaeoclathratiforme BU-1 6462381 YP_002017327.1 CDS Ppha_0381 NC_011060.1 365832 367169 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1746 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 365832..367169 Pelodictyon phaeoclathratiforme BU-1 6462380 YP_002017328.1 CDS Ppha_0382 NC_011060.1 367353 369278 D PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1482 ATPase; ABC transporter-like protein 367353..369278 Pelodictyon phaeoclathratiforme BU-1 6462379 YP_002017329.1 CDS Ppha_0383 NC_011060.1 369281 370270 D PFAM: glycosyl transferase family 2; KEGG: cte:CT0216 glycosyl transferase; family 2 glycosyl transferase 369281..370270 Pelodictyon phaeoclathratiforme BU-1 6462377 YP_002017330.1 CDS Ppha_0384 NC_011060.1 370487 371641 D KEGG: cte:CT0219 glycosyl transferase; glycosyl transferase family protein 370487..371641 Pelodictyon phaeoclathratiforme BU-1 6462372 YP_002017331.1 CDS Ppha_0385 NC_011060.1 371651 371980 R KEGG: pvi:Cvib_0686 hypothetical protein; hypothetical protein complement(371651..371980) Pelodictyon phaeoclathratiforme BU-1 6462369 YP_002017332.1 CDS Ppha_0386 NC_011060.1 372120 373172 R PFAM: glycosyl transferase family 9; KEGG: cte:CT0221 heptosyltransferase; glycosyl transferase family protein complement(372120..373172) Pelodictyon phaeoclathratiforme BU-1 6462365 YP_002017333.1 CDS Ppha_0387 NC_011060.1 373169 374263 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0359 glycosyl transferase, group 1; group 1 glycosyl transferase complement(373169..374263) Pelodictyon phaeoclathratiforme BU-1 6462362 YP_002017334.1 CDS Ppha_0388 NC_011060.1 374332 375384 R PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1472 glycosyl transferase; group 1 glycosyl transferase complement(374332..375384) Pelodictyon phaeoclathratiforme BU-1 6462361 YP_002017335.1 CDS Ppha_0389 NC_011060.1 375554 376633 R PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0692 glycosyl transferase, group 1; group 1 glycosyl transferase complement(375554..376633) Pelodictyon phaeoclathratiforme BU-1 6462360 YP_002017336.1 CDS Ppha_0390 NC_011060.1 376815 377780 D PFAM: Abortive infection protein; KEGG: plt:Plut_1789 hypothetical protein; abortive infection protein 376815..377780 Pelodictyon phaeoclathratiforme BU-1 6462359 YP_002017337.1 CDS Ppha_0391 NC_011060.1 377808 378629 D PFAM: phosphatidate cytidylyltransferase; KEGG: cch:Cag_1470 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 377808..378629 Pelodictyon phaeoclathratiforme BU-1 6462357 YP_002017338.1 CDS Ppha_0392 NC_011060.1 378756 379226 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: plt:Plut_1787 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 378756..379226 Pelodictyon phaeoclathratiforme BU-1 6462355 YP_002017339.1 CDS hisS NC_011060.1 379258 380547 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 379258..380547 Pelodictyon phaeoclathratiforme BU-1 6462354 YP_002017340.1 CDS Ppha_0394 NC_011060.1 380547 380798 D PFAM: glutaredoxin; glutaredoxin 2; KEGG: cte:CT0237 hypothetical protein; glutaredoxin 380547..380798 Pelodictyon phaeoclathratiforme BU-1 6462353 YP_002017341.1 CDS Ppha_0395 NC_011060.1 380927 381130 D KEGG: cch:Cag_1465 hypothetical protein; hypothetical protein 380927..381130 Pelodictyon phaeoclathratiforme BU-1 6462351 YP_002017342.1 CDS Ppha_0396 NC_011060.1 381260 381781 D KEGG: pvi:Cvib_1563 protein of unknown function DUF150; hypothetical protein 381260..381781 Pelodictyon phaeoclathratiforme BU-1 6462349 YP_002017343.1 CDS nusA NC_011060.1 381840 383384 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 381840..383384 Pelodictyon phaeoclathratiforme BU-1 6462347 YP_002017344.1 CDS infB NC_011060.1 383447 386407 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 383447..386407 Pelodictyon phaeoclathratiforme BU-1 6462346 YP_002017345.1 CDS Ppha_0399 NC_011060.1 386426 386785 D PFAM: ribosome-binding factor A; KEGG: pvi:Cvib_1560 ribosome-binding factor A; ribosome-binding factor A 386426..386785 Pelodictyon phaeoclathratiforme BU-1 6462337 YP_002017346.1 CDS Ppha_0400 NC_011060.1 386812 387537 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cch:Cag_1460 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 386812..387537 Pelodictyon phaeoclathratiforme BU-1 6462335 YP_002017347.1 CDS rpsO NC_011060.1 388566 388835 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 388566..388835 Pelodictyon phaeoclathratiforme BU-1 6462325 YP_002017348.1 CDS Ppha_0403 NC_011060.1 388926 389813 D PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cch:Cag_1457 hypothetical protein; hypothetical protein 388926..389813 Pelodictyon phaeoclathratiforme BU-1 6462324 YP_002017349.1 CDS gmk NC_011060.1 389818 390402 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 389818..390402 Pelodictyon phaeoclathratiforme BU-1 6462322 YP_002017350.1 CDS Ppha_0405 NC_011060.1 390414 390767 D KEGG: plt:Plut_1772 hypothetical protein; hypothetical protein 390414..390767 Pelodictyon phaeoclathratiforme BU-1 6462316 YP_002017351.1 CDS Ppha_0406 NC_011060.1 390745 391245 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_0377 glyoxalase/bleomycin resistance protein/dioxygenase; Glyoxalase/bleomycin resistance protein/dioxygenase 390745..391245 Pelodictyon phaeoclathratiforme BU-1 6462315 YP_002017352.1 CDS Ppha_0407 NC_011060.1 391290 392048 R PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Nucleotidyl transferase; KEGG: pvi:Cvib_1552 UDP-N-acetylglucosamine pyrophosphorylase; nucleotidyl transferase complement(391290..392048) Pelodictyon phaeoclathratiforme BU-1 6462311 YP_002017353.1 CDS Ppha_0408 NC_011060.1 392084 392470 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(392084..392470) Pelodictyon phaeoclathratiforme BU-1 6462306 YP_002017354.1 CDS Ppha_0409 NC_011060.1 392487 392993 R PFAM: protein of unknown function DUF1239; KEGG: cph:Cpha266_0380 hypothetical protein; hypothetical protein complement(392487..392993) Pelodictyon phaeoclathratiforme BU-1 6462302 YP_002017355.1 CDS Ppha_0410 NC_011060.1 393048 393596 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: cch:Cag_1448 outer membrane protein OmpH; outer membrane chaperone Skp complement(393048..393596) Pelodictyon phaeoclathratiforme BU-1 6462298 YP_002017356.1 CDS Ppha_0411 NC_011060.1 393950 394669 D TIGRFAM: methyltransferase FkbM family; KEGG: cph:Cpha266_0382 methyltransferase FkbM family; FkbM family methyltransferase 393950..394669 Pelodictyon phaeoclathratiforme BU-1 6462293 YP_002017357.1 CDS Ppha_0412 NC_011060.1 394687 395838 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cph:Cpha266_0383 DNA protecting protein DprA; DNA protecting protein DprA complement(394687..395838) Pelodictyon phaeoclathratiforme BU-1 6462292 YP_002017358.1 CDS Ppha_0413 NC_011060.1 395853 396866 R PFAM: Polyprenyl synthetase; KEGG: cph:Cpha266_0384 polyprenyl synthetase; polyprenyl synthetase complement(395853..396866) Pelodictyon phaeoclathratiforme BU-1 6462290 YP_002017359.1 CDS Ppha_0414 NC_011060.1 396863 397936 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(396863..397936) Pelodictyon phaeoclathratiforme BU-1 6462289 YP_002017360.1 CDS Ppha_0416 NC_011060.1 398658 399899 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase complement(398658..399899) Pelodictyon phaeoclathratiforme BU-1 6462286 YP_002017361.1 CDS Ppha_0417 NC_011060.1 399896 400279 R KEGG: eba:ebA7204 predicted transposase; hypothetical protein complement(399896..400279) Pelodictyon phaeoclathratiforme BU-1 6462284 YP_002017362.1 CDS Ppha_0419 NC_011060.1 402467 402703 D hypothetical protein 402467..402703 Pelodictyon phaeoclathratiforme BU-1 6462280 YP_002017363.1 CDS Ppha_0420 NC_011060.1 402696 403109 D PFAM: PilT protein domain protein; KEGG: mar:MAE_40120 PilT-like protein; PilT protein domain-containing protein 402696..403109 Pelodictyon phaeoclathratiforme BU-1 6462270 YP_002017364.1 CDS Ppha_0421 NC_011060.1 403124 404392 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214; hypothetical protein 403124..404392 Pelodictyon phaeoclathratiforme BU-1 6462267 YP_002017365.1 CDS Ppha_0422 NC_011060.1 404407 406248 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0453 ATPase; ABC transporter-like protein complement(404407..406248) Pelodictyon phaeoclathratiforme BU-1 6462266 YP_002017366.1 CDS Ppha_0423 NC_011060.1 406241 407677 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cch:Cag_0454 phosphoglucomutase/phosphomannomutase family protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(406241..407677) Pelodictyon phaeoclathratiforme BU-1 6462265 YP_002017367.1 CDS rpsT NC_011060.1 407969 408244 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 407969..408244 Pelodictyon phaeoclathratiforme BU-1 6462264 YP_002017368.1 CDS ruvA NC_011060.1 408365 408967 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 408365..408967 Pelodictyon phaeoclathratiforme BU-1 6462256 YP_002017369.1 CDS Ppha_0426 NC_011060.1 408977 410245 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_0391 FolC bifunctional protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 408977..410245 Pelodictyon phaeoclathratiforme BU-1 6462253 YP_002017370.1 CDS rho NC_011060.1 410565 411854 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 410565..411854 Pelodictyon phaeoclathratiforme BU-1 6462252 YP_002017371.1 CDS Ppha_0428 NC_011060.1 411835 412212 R hypothetical protein complement(411835..412212) Pelodictyon phaeoclathratiforme BU-1 6462246 YP_002017372.1 CDS Ppha_0429 NC_011060.1 412511 413260 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: plt:Plut_1755 electron transfer flavoprotein beta subunit; electron transfer flavoprotein subunit alpha/beta 412511..413260 Pelodictyon phaeoclathratiforme BU-1 6462232 YP_002017373.1 CDS Ppha_0430 NC_011060.1 413292 414275 D PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cch:Cag_0461 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha 413292..414275 Pelodictyon phaeoclathratiforme BU-1 6462224 YP_002017374.1 CDS Ppha_0431 NC_011060.1 414350 414943 D PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cph:Cpha266_0395 protein of unknown function DUF151; hypothetical protein 414350..414943 Pelodictyon phaeoclathratiforme BU-1 6462221 YP_002017375.1 CDS Ppha_0432 NC_011060.1 415053 417557 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: cph:Cpha266_0397 surface antigen (D15); outer membrane protein assembly complex, YaeT protein complement(415053..417557) Pelodictyon phaeoclathratiforme BU-1 6462217 YP_002017376.1 CDS Ppha_0433 NC_011060.1 417580 418428 R KEGG: plt:Plut_1750 di-trans-poly-cis-decaprenylcistransferase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(417580..418428) Pelodictyon phaeoclathratiforme BU-1 6462215 YP_002017377.1 CDS gatA NC_011060.1 418650 420077 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 418650..420077 Pelodictyon phaeoclathratiforme BU-1 6462214 YP_002017378.1 CDS Ppha_0435 NC_011060.1 420124 421023 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: plt:Plut_1748 succinyl-CoA ligase, alpha subunit; succinyl-CoA synthetase subunit alpha 420124..421023 Pelodictyon phaeoclathratiforme BU-1 6462212 YP_002017379.1 CDS Ppha_0436 NC_011060.1 421183 422163 R KEGG: cch:Cag_0467 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(421183..422163) Pelodictyon phaeoclathratiforme BU-1 6462211 YP_002017380.1 CDS Ppha_0437 NC_011060.1 422289 422636 D KEGG: cph:Cpha266_0402 hypothetical protein; hypothetical protein 422289..422636 Pelodictyon phaeoclathratiforme BU-1 6462210 YP_002017381.1 CDS Ppha_0438 NC_011060.1 422660 424174 D PFAM: polysaccharide biosynthesis protein; KEGG: cch:Cag_0469 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 422660..424174 Pelodictyon phaeoclathratiforme BU-1 6462208 YP_002017382.1 CDS Ppha_0439 NC_011060.1 424187 424696 R KEGG: pvi:Cvib_1524 hypothetical protein; hypothetical protein complement(424187..424696) Pelodictyon phaeoclathratiforme BU-1 6462206 YP_002017383.1 CDS Ppha_0440 NC_011060.1 424781 425164 R KEGG: pvi:Cvib_1523 hypothetical protein; hypothetical protein complement(424781..425164) Pelodictyon phaeoclathratiforme BU-1 6462205 YP_002017384.1 CDS Ppha_0441 NC_011060.1 425231 425773 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cph:Cpha266_0408 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 subunit complement(425231..425773) Pelodictyon phaeoclathratiforme BU-1 6462204 YP_002017385.1 CDS Ppha_0442 NC_011060.1 425791 427173 R PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: plt:Plut_1740 phosphoglucomutase; Phosphoglucomutase complement(425791..427173) Pelodictyon phaeoclathratiforme BU-1 6462203 YP_002017386.1 CDS Ppha_0443 NC_011060.1 427262 428404 D TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; KEGG: cph:Cpha266_0411 lipid-A-disaccharide synthase; lipid-A-disaccharide synthase 427262..428404 Pelodictyon phaeoclathratiforme BU-1 6462202 YP_002017387.1 CDS Ppha_0444 NC_011060.1 428511 428798 D KEGG: cch:Cag_0476 hypothetical protein; hypothetical protein 428511..428798 Pelodictyon phaeoclathratiforme BU-1 6462201 YP_002017388.1 CDS Ppha_0445 NC_011060.1 428802 429140 R KEGG: cph:Cpha266_2281 hypothetical protein; hypothetical protein complement(428802..429140) Pelodictyon phaeoclathratiforme BU-1 6462195 YP_002017389.1 CDS Ppha_0446 NC_011060.1 429219 431876 R PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like; hypothetical protein complement(429219..431876) Pelodictyon phaeoclathratiforme BU-1 6462193 YP_002017390.1 CDS Ppha_0447 NC_011060.1 432043 434013 R these proteins belong to a family of oxidoreductases related to the NADPH-dependent glutamate synthase; NADPH-dependent glutamate synthase small subunit complement(432043..434013) Pelodictyon phaeoclathratiforme BU-1 6462192 YP_002017391.1 CDS ispH NC_011060.1 434059 435024 R catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(434059..435024) Pelodictyon phaeoclathratiforme BU-1 6462190 YP_002017392.1 CDS Ppha_0449 NC_011060.1 435101 435922 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(435101..435922) Pelodictyon phaeoclathratiforme BU-1 6462188 YP_002017393.1 CDS Ppha_0450 NC_011060.1 436042 437133 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(436042..437133) Pelodictyon phaeoclathratiforme BU-1 6462187 YP_002017394.1 CDS cmk NC_011060.1 437251 437946 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 437251..437946 Pelodictyon phaeoclathratiforme BU-1 6462184 YP_002017395.1 CDS rpsA NC_011060.1 438070 439848 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 438070..439848 Pelodictyon phaeoclathratiforme BU-1 6462182 YP_002017396.1 CDS Ppha_0453 NC_011060.1 440029 441846 R PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: pmo:Pmob_0755 peptidase S8 and S53 subtilisin kexin sedolisin; peptidase S8/S53 subtilisin kexin sedolisin complement(440029..441846) Pelodictyon phaeoclathratiforme BU-1 6462174 YP_002017397.1 CDS Ppha_0454 NC_011060.1 442003 442476 D KEGG: bxe:Bxe_A1213 hypothetical protein; hypothetical protein 442003..442476 Pelodictyon phaeoclathratiforme BU-1 6462172 YP_002017398.1 CDS Ppha_0455 NC_011060.1 442525 442740 R PFAM: protein of unknown function UPF0150; KEGG: noc:Noc_0168 hypothetical protein; hypothetical protein complement(442525..442740) Pelodictyon phaeoclathratiforme BU-1 6462166 YP_002017399.1 CDS era NC_011060.1 442761 443681 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(442761..443681) Pelodictyon phaeoclathratiforme BU-1 6462164 YP_002017400.1 CDS Ppha_0457 NC_011060.1 443787 445025 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: plt:Plut_1730 rod shape-determining protein RodA; rod shape-determining protein RodA 443787..445025 Pelodictyon phaeoclathratiforme BU-1 6462163 YP_002017401.1 CDS Ppha_0458 NC_011060.1 445083 445538 R KEGG: plt:Plut_1729 hypothetical protein; hypothetical protein complement(445083..445538) Pelodictyon phaeoclathratiforme BU-1 6462162 YP_002017402.1 CDS Ppha_0459 NC_011060.1 445711 447072 D KEGG: cph:Cpha266_0422 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: radical SAM protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 445711..447072 Pelodictyon phaeoclathratiforme BU-1 6462160 YP_002017403.1 CDS Ppha_0460 NC_011060.1 447124 447657 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 447124..447657 Pelodictyon phaeoclathratiforme BU-1 6462159 YP_002017404.1 CDS Ppha_0461 NC_011060.1 447920 448228 R PFAM: histone family protein DNA-binding protein; KEGG: cph:Cpha266_0424 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(447920..448228) Pelodictyon phaeoclathratiforme BU-1 6462158 YP_002017405.1 CDS Ppha_0462 NC_011060.1 448266 448637 R KEGG: plt:Plut_1723 hypothetical protein; hypothetical protein complement(448266..448637) Pelodictyon phaeoclathratiforme BU-1 6462149 YP_002017406.1 CDS Ppha_0463 NC_011060.1 448656 450644 R KEGG: pvi:Cvib_1504 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH complement(448656..450644) Pelodictyon phaeoclathratiforme BU-1 6462146 YP_002017407.1 CDS gltX NC_011060.1 450892 452400 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 450892..452400 Pelodictyon phaeoclathratiforme BU-1 6462145 YP_002017408.1 CDS Ppha_0465 NC_011060.1 452724 453854 D PFAM: hydroxyneurosporene synthase; KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase; hydroxyneurosporene synthase 452724..453854 Pelodictyon phaeoclathratiforme BU-1 6462142 YP_002017409.1 CDS Ppha_0466 NC_011060.1 454026 454574 D PFAM: Rieske [2Fe-2S] domain protein; Cytochrome b6-f complex Fe-S subunit; KEGG: cph:Cpha266_0429 Plastoquinol--plastocyanin reductase; Plastoquinol--plastocyanin reductase 454026..454574 Pelodictyon phaeoclathratiforme BU-1 6462140 YP_002017410.1 CDS Ppha_0467 NC_011060.1 454610 455875 D PFAM: Cytochrome b/b6 domain; KEGG: cph:Cpha266_0430 cytochrome b/b6, N-terminal domain; Cytochrome b/b6 domain 454610..455875 Pelodictyon phaeoclathratiforme BU-1 6462137 YP_002017411.1 CDS Ppha_0468 NC_011060.1 455997 459557 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: plt:Plut_1717 alpha amylase, catalytic subdomain; alpha amylase catalytic protein complement(455997..459557) Pelodictyon phaeoclathratiforme BU-1 6462129 YP_002017412.1 CDS Ppha_0469 NC_011060.1 459615 460010 R KEGG: cph:Cpha266_0432 hypothetical protein; hypothetical protein complement(459615..460010) Pelodictyon phaeoclathratiforme BU-1 6462127 YP_002017413.1 CDS Ppha_0470 NC_011060.1 459997 460395 R KEGG: cph:Cpha266_0433 hypothetical protein; hypothetical protein complement(459997..460395) Pelodictyon phaeoclathratiforme BU-1 6462124 YP_002017414.1 CDS Ppha_0471 NC_011060.1 460419 460694 R KEGG: cph:Cpha266_0434 hypothetical protein; hypothetical protein complement(460419..460694) Pelodictyon phaeoclathratiforme BU-1 6462115 YP_002017415.1 CDS Ppha_0472 NC_011060.1 460798 461535 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: plt:Plut_1713 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(460798..461535) Pelodictyon phaeoclathratiforme BU-1 6462113 YP_002017416.1 CDS Ppha_0473 NC_011060.1 461618 462673 R KEGG: cph:Cpha266_0452 molybdate ABC transporter, ATPase subunit; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase complement(461618..462673) Pelodictyon phaeoclathratiforme BU-1 6462111 YP_002017417.1 CDS Ppha_0474 NC_011060.1 462670 463356 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_0453 molybdate ABC transporter, inner membrane subunit; molybdate ABC transporter inner membrane subunit complement(462670..463356) Pelodictyon phaeoclathratiforme BU-1 6462106 YP_002017418.1 CDS Ppha_0475 NC_011060.1 463403 464152 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cph:Cpha266_0454 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(463403..464152) Pelodictyon phaeoclathratiforme BU-1 6462103 YP_002017419.1 CDS Ppha_0476 NC_011060.1 464166 465020 R TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cph:Cpha266_0455 ModD protein; modD protein complement(464166..465020) Pelodictyon phaeoclathratiforme BU-1 6462102 YP_002017420.1 CDS Ppha_0477 NC_011060.1 465397 466113 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1685 ABC transporter related; ABC transporter-like protein complement(465397..466113) Pelodictyon phaeoclathratiforme BU-1 6462098 YP_002017421.1 CDS Ppha_0478 NC_011060.1 466107 468011 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1684 ABC transporter related; ABC transporter-like protein complement(466107..468011) Pelodictyon phaeoclathratiforme BU-1 6462093 YP_002017422.1 CDS Ppha_0479 NC_011060.1 468022 468906 R PFAM: inner-membrane translocator; KEGG: cph:Cpha266_1683 inner-membrane translocator; inner-membrane translocator complement(468022..468906) Pelodictyon phaeoclathratiforme BU-1 6462092 YP_002017423.1 CDS Ppha_0480 NC_011060.1 468929 470152 R PFAM: Extracellular ligand-binding receptor; KEGG: cph:Cpha266_1682 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(468929..470152) Pelodictyon phaeoclathratiforme BU-1 6462089 YP_002017424.1 CDS Ppha_0481 NC_011060.1 470429 471154 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0264 ATPase; ABC transporter-like protein 470429..471154 Pelodictyon phaeoclathratiforme BU-1 6462088 YP_002017425.1 CDS Ppha_0482 NC_011060.1 471197 472735 D KEGG: cph:Cpha266_0474 hypothetical protein; hypothetical protein 471197..472735 Pelodictyon phaeoclathratiforme BU-1 6462083 YP_002017426.1 CDS Ppha_0483 NC_011060.1 472750 474774 D KEGG: cch:Cag_0275 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 472750..474774 Pelodictyon phaeoclathratiforme BU-1 6462079 YP_002017427.1 CDS Ppha_0484 NC_011060.1 474844 475203 D PFAM: VanZ family protein; KEGG: cph:Cpha266_0477 hypothetical protein; VanZ family protein 474844..475203 Pelodictyon phaeoclathratiforme BU-1 6462078 YP_002017428.1 CDS Ppha_0485 NC_011060.1 475244 475993 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0478 demethylmenaquinone methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(475244..475993) Pelodictyon phaeoclathratiforme BU-1 6462071 YP_002017429.1 CDS hisI NC_011060.1 475977 476390 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(475977..476390) Pelodictyon phaeoclathratiforme BU-1 6462070 YP_002017430.1 CDS Ppha_0487 NC_011060.1 476562 477644 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0480 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 476562..477644 Pelodictyon phaeoclathratiforme BU-1 6462069 YP_002017431.1 CDS Ppha_0488 NC_011060.1 477663 478670 D PFAM: ferrochelatase; KEGG: cph:Cpha266_0481 ferrochelatase; ferrochelatase 477663..478670 Pelodictyon phaeoclathratiforme BU-1 6462065 YP_002017432.1 CDS Ppha_0489 NC_011060.1 478747 479610 D PFAM: protein of unknown function DUF88; KEGG: cph:Cpha266_0482 protein of unknown function DUF88; hypothetical protein 478747..479610 Pelodictyon phaeoclathratiforme BU-1 6462063 YP_002017433.1 CDS Ppha_0490 NC_011060.1 479616 480335 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0484 ABC transporter related; ABC transporter-like protein complement(479616..480335) Pelodictyon phaeoclathratiforme BU-1 6462059 YP_002017434.1 CDS Ppha_0491 NC_011060.1 480347 481114 R PFAM: cobalt transport protein; KEGG: cph:Cpha266_0485 cobalt transport protein; cobalt transport protein complement(480347..481114) Pelodictyon phaeoclathratiforme BU-1 6462055 YP_002017435.1 CDS Ppha_0492 NC_011060.1 481114 482127 R PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cph:Cpha266_0486 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis protein CbiM complement(481114..482127) Pelodictyon phaeoclathratiforme BU-1 6462054 YP_002017436.1 CDS Ppha_0493 NC_011060.1 482307 483740 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; oxidoreductase complement(482307..483740) Pelodictyon phaeoclathratiforme BU-1 6462052 YP_002017437.1 CDS Ppha_0494 NC_011060.1 483844 484689 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cph:Cpha266_0490 ferredoxin--NADP(+) reductase subunit alpha; ferredoxin-NADP(+) reductase subunit alpha complement(483844..484689) Pelodictyon phaeoclathratiforme BU-1 6462050 YP_002017438.1 CDS hisH NC_011060.1 484841 485446 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 484841..485446 Pelodictyon phaeoclathratiforme BU-1 6462046 YP_002017439.1 CDS Ppha_0496 NC_011060.1 485470 486240 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 485470..486240 Pelodictyon phaeoclathratiforme BU-1 6462043 YP_002017440.1 CDS Ppha_0497 NC_011060.1 486311 487054 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cch:Cag_0542 pseudouridine synthase, Rsu; pseudouridine synthase 486311..487054 Pelodictyon phaeoclathratiforme BU-1 6462042 YP_002017441.1 CDS Ppha_0498 NC_011060.1 487091 489127 D KEGG: pvi:Cvib_1472 hypothetical protein; hypothetical protein 487091..489127 Pelodictyon phaeoclathratiforme BU-1 6462041 YP_002017442.1 CDS Ppha_0499 NC_011060.1 489148 490101 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cph:Cpha266_0496 translation factor SUA5; Sua5/YciO/YrdC/YwlC family protein complement(489148..490101) Pelodictyon phaeoclathratiforme BU-1 6462033 YP_002017443.1 CDS Ppha_0500 NC_011060.1 490125 490760 R PFAM: phosphatidate cytidylyltransferase; KEGG: pvi:Cvib_1470 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(490125..490760) Pelodictyon phaeoclathratiforme BU-1 6462032 YP_002017444.1 CDS Ppha_0501 NC_011060.1 490931 492490 D PFAM: Ppx/GppA phosphatase; KEGG: cch:Cag_0423 exopolyphosphatase; Ppx/GppA phosphatase 490931..492490 Pelodictyon phaeoclathratiforme BU-1 6462031 YP_002017445.1 CDS Ppha_0502 NC_011060.1 492492 494624 D TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: cph:Cpha266_0499 para-aminobenzoate synthase, subunit I; para-aminobenzoate synthase subunit I 492492..494624 Pelodictyon phaeoclathratiforme BU-1 6462030 YP_002017446.1 CDS Ppha_0503 NC_011060.1 494690 495151 D KEGG: pvi:Cvib_1467 hypothetical protein; hypothetical protein 494690..495151 Pelodictyon phaeoclathratiforme BU-1 6462029 YP_002017447.1 CDS Ppha_0504 NC_011060.1 495148 495786 R KEGG: pvi:Cvib_1466 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III complement(495148..495786) Pelodictyon phaeoclathratiforme BU-1 6462023 YP_002017448.1 CDS Ppha_0505 NC_011060.1 495793 496308 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cph:Cpha266_0502 NusB antitermination factor; NusB antitermination factor complement(495793..496308) Pelodictyon phaeoclathratiforme BU-1 6462020 YP_002017449.1 CDS Ppha_0506 NC_011060.1 496319 497020 R PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pvi:Cvib_1463 haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(496319..497020) Pelodictyon phaeoclathratiforme BU-1 6462018 YP_002017450.1 CDS Ppha_0508 NC_011060.1 497681 498274 D KEGG: gur:Gura_0825 hypothetical protein; hypothetical protein 497681..498274 Pelodictyon phaeoclathratiforme BU-1 6462012 YP_002017451.1 CDS Ppha_0509 NC_011060.1 498299 498577 R hypothetical protein complement(498299..498577) Pelodictyon phaeoclathratiforme BU-1 6462011 YP_002017452.1 CDS Ppha_0510 NC_011060.1 498615 499496 R KEGG: cph:Cpha266_0505 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(498615..499496) Pelodictyon phaeoclathratiforme BU-1 6462010 YP_002017453.1 CDS Ppha_0511 NC_011060.1 499496 500488 R PFAM: peptidase M50; KEGG: cph:Cpha266_0506 peptidase M50; peptidase M50 complement(499496..500488) Pelodictyon phaeoclathratiforme BU-1 6462009 YP_002017454.1 CDS Ppha_0512 NC_011060.1 500495 500938 R KEGG: cph:Cpha266_0507 cytochrome c; cytochrome c complement(500495..500938) Pelodictyon phaeoclathratiforme BU-1 6462007 YP_002017455.1 CDS Ppha_0513 NC_011060.1 501080 502909 D PFAM: cobalamin B12-binding domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0114 elongator protein 3/MiaB/NifB; radical SAM protein 501080..502909 Pelodictyon phaeoclathratiforme BU-1 6462005 YP_002017456.1 CDS Ppha_0514 NC_011060.1 502923 504722 D KEGG: cph:Cpha266_0053 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 502923..504722 Pelodictyon phaeoclathratiforme BU-1 6462003 YP_002017457.1 CDS Ppha_0515 NC_011060.1 504816 505064 D KEGG: cph:Cpha266_2644 hypothetical protein; hypothetical protein 504816..505064 Pelodictyon phaeoclathratiforme BU-1 6462001 YP_002017458.1 CDS Ppha_0516 NC_011060.1 505220 505486 D KEGG: scl:sce5011 hypothetical protein; hypothetical protein 505220..505486 Pelodictyon phaeoclathratiforme BU-1 6462000 YP_002017459.1 CDS Ppha_0518 NC_011060.1 506081 506626 D KEGG: cph:Cpha266_2650 hypothetical protein; hypothetical protein 506081..506626 Pelodictyon phaeoclathratiforme BU-1 6461997 YP_002017460.1 CDS Ppha_0519 NC_011060.1 506645 509104 D KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular polysaccharide biosynthesis protein 506645..509104 Pelodictyon phaeoclathratiforme BU-1 6461993 YP_002017461.1 CDS Ppha_0520 NC_011060.1 509135 511078 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_2635 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 509135..511078 Pelodictyon phaeoclathratiforme BU-1 6461987 YP_002017462.1 CDS Ppha_0521 NC_011060.1 511180 511437 D PFAM: DNA polymerase beta domain protein region; KEGG: cch:Cag_1383 hypothetical protein; DNA polymerase beta domain-containing protein 511180..511437 Pelodictyon phaeoclathratiforme BU-1 6461986 YP_002017463.1 CDS Ppha_0522 NC_011060.1 511434 511919 D KEGG: mmw:Mmwyl1_0818 hypothetical protein; hypothetical protein 511434..511919 Pelodictyon phaeoclathratiforme BU-1 6461985 YP_002017464.1 CDS Ppha_0523 NC_011060.1 512122 513837 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0616 ABC transporter related; ABC transporter-like protein 512122..513837 Pelodictyon phaeoclathratiforme BU-1 6461978 YP_002017465.1 CDS Ppha_0524 NC_011060.1 513879 514877 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: lic:LIC12176 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 513879..514877 Pelodictyon phaeoclathratiforme BU-1 6461973 YP_002017466.1 CDS Ppha_0525 NC_011060.1 514874 516061 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: lic:LIC12175 aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 514874..516061 Pelodictyon phaeoclathratiforme BU-1 6461971 YP_002017467.1 CDS Ppha_0526 NC_011060.1 516058 516687 D PFAM: transferase hexapeptide repeat containing protein; KEGG: lic:LIC12174 acetyl transferase; transferase hexapeptide repeat containing protein 516058..516687 Pelodictyon phaeoclathratiforme BU-1 6461967 YP_002017468.1 CDS Ppha_0527 NC_011060.1 516684 517691 D PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: syw:SYNW0448 N-acetylneuraminic acid synthetase; N-acylneuraminate-9-phosphate synthase 516684..517691 Pelodictyon phaeoclathratiforme BU-1 6461965 YP_002017469.1 CDS Ppha_0528 NC_011060.1 517688 518851 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: syw:SYNW0449 N-acetylglucosamine-6-phosphate 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 517688..518851 Pelodictyon phaeoclathratiforme BU-1 6461962 YP_002017470.1 CDS Ppha_0529 NC_011060.1 518867 519925 D PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: tdn:Tmden_0598 nucleotidyl transferase; nucleotidyl transferase 518867..519925 Pelodictyon phaeoclathratiforme BU-1 6461956 YP_002017471.1 CDS Ppha_0530 NC_011060.1 519935 521257 D KEGG: lpc:LPC_2544 LPS biosynthesis protein, PseA-like protein; LPS biosynthesis protein, PseA-like protein 519935..521257 Pelodictyon phaeoclathratiforme BU-1 6461954 YP_002017472.1 CDS Ppha_0531 NC_011060.1 521267 522037 D PFAM: histidine biosynthesis protein; KEGG: lpc:LPC_2543 imidazole glycerol phosphate synthase, cyclase subunit HisF; histidine biosynthesis protein 521267..522037 Pelodictyon phaeoclathratiforme BU-1 6461953 YP_002017473.1 CDS hisH NC_011060.1 522024 522671 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 522024..522671 Pelodictyon phaeoclathratiforme BU-1 6461943 YP_002017474.1 CDS Ppha_0533 NC_011060.1 522685 523698 D PFAM: oxidoreductase domain protein; KEGG: pmf:P9303_01161 hypothetical protein; oxidoreductase domain-containing protein 522685..523698 Pelodictyon phaeoclathratiforme BU-1 6461937 YP_002017475.1 CDS Ppha_0534 NC_011060.1 523695 524399 D PFAM: acylneuraminate cytidylyltransferase; KEGG: dvl:Dvul_2588 N-acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 523695..524399 Pelodictyon phaeoclathratiforme BU-1 6461933 YP_002017476.1 CDS Ppha_0535 NC_011060.1 524396 525199 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_2393 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 524396..525199 Pelodictyon phaeoclathratiforme BU-1 6461932 YP_002017477.1 CDS Ppha_0536 NC_011060.1 525193 525756 D PFAM: transferase hexapeptide repeat containing protein; KEGG: vvy:VV0322 acetyltransferase; transferase hexapeptide repeat containing protein 525193..525756 Pelodictyon phaeoclathratiforme BU-1 6461930 YP_002017478.1 CDS Ppha_0537 NC_011060.1 525781 527061 D KEGG: aeh:Mlg_2331 hypothetical protein; hypothetical protein 525781..527061 Pelodictyon phaeoclathratiforme BU-1 6461929 YP_002017479.1 CDS Ppha_0538 NC_011060.1 527054 527740 D TIGRFAM: methyltransferase FkbM family; KEGG: ava:Ava_1043 methyltransferase FkbM; FkbM family methyltransferase 527054..527740 Pelodictyon phaeoclathratiforme BU-1 6461925 YP_002017480.1 CDS Ppha_0539 NC_011060.1 528006 528479 D KEGG: cph:Cpha266_2625 transposase; transposase 528006..528479 Pelodictyon phaeoclathratiforme BU-1 6461919 YP_002017481.1 CDS Ppha_0540 NC_011060.1 528575 529138 D KEGG: cph:Cpha266_2626 transposase; transposase 528575..529138 Pelodictyon phaeoclathratiforme BU-1 6461916 YP_002017482.1 CDS Ppha_0547 NC_011060.1 533895 535049 D KEGG: cau:Caur_2124 hypothetical protein; hypothetical protein 533895..535049 Pelodictyon phaeoclathratiforme BU-1 6461895 YP_002017483.1 CDS Ppha_0553 NC_011060.1 538890 540155 D PFAM: glycosyl transferase group 1; KEGG: bfr:BF2784 glycosyltransferase; group 1 glycosyl transferase 538890..540155 Pelodictyon phaeoclathratiforme BU-1 6461860 YP_002017484.1 CDS Ppha_0554 NC_011060.1 540310 541503 D KEGG: dps:DPPB82 related to polysaccharide transport proteins; hypothetical protein 540310..541503 Pelodictyon phaeoclathratiforme BU-1 6461858 YP_002017485.1 CDS Ppha_0555 NC_011060.1 541664 542602 D hypothetical protein 541664..542602 Pelodictyon phaeoclathratiforme BU-1 6461854 YP_002017486.1 CDS Ppha_0556 NC_011060.1 542618 543958 D KEGG: syn:slr2118 hypothetical protein; hypothetical protein 542618..543958 Pelodictyon phaeoclathratiforme BU-1 6461851 YP_002017487.1 CDS Ppha_0557 NC_011060.1 543955 545154 D PFAM: glycosyl transferase group 1; KEGG: sus:Acid_4655 glycosyl transferase, group 1; group 1 glycosyl transferase 543955..545154 Pelodictyon phaeoclathratiforme BU-1 6461849 YP_002017488.1 CDS Ppha_0558 NC_011060.1 545187 546209 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; Polysaccharide biosynthesis domain protein; KEGG: gur:Gura_1672 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 545187..546209 Pelodictyon phaeoclathratiforme BU-1 6461847 YP_002017489.1 CDS Ppha_0559 NC_011060.1 546226 547344 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 546226..547344 Pelodictyon phaeoclathratiforme BU-1 6461846 YP_002017490.1 CDS Ppha_0560 NC_011060.1 547393 548505 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: gur:Gura_1696 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 547393..548505 Pelodictyon phaeoclathratiforme BU-1 6461842 YP_002017491.1 CDS Ppha_0561 NC_011060.1 548632 549132 D KEGG: bxe:Bxe_C1079 acetyltransferase; acetyltransferase 548632..549132 Pelodictyon phaeoclathratiforme BU-1 6461836 YP_002017492.1 CDS Ppha_0562 NC_011060.1 549369 549920 D KEGG: pna:Pnap_3182 acetyltransferase; acetyltransferase 549369..549920 Pelodictyon phaeoclathratiforme BU-1 6461834 YP_002017493.1 CDS Ppha_0563 NC_011060.1 549913 550173 D KEGG: mca:MCA1164 methyltransferase domain protein; methyltransferase domain-containing protein 549913..550173 Pelodictyon phaeoclathratiforme BU-1 6461830 YP_002017494.1 CDS Ppha_0565 NC_011060.1 551811 552362 D KEGG: ret:RHE_CH03209 methyltransferase; hypothetical protein 551811..552362 Pelodictyon phaeoclathratiforme BU-1 6461828 YP_002017495.1 CDS Ppha_0566 NC_011060.1 552359 553261 D PFAM: glycosyl transferase family 2; KEGG: bvu:BVU_2654 glycosyltransferase family 2; family 2 glycosyl transferase 552359..553261 Pelodictyon phaeoclathratiforme BU-1 6461826 YP_002017496.1 CDS Ppha_0567 NC_011060.1 553277 554035 D PFAM: glycosyl transferase family 2; KEGG: rma:Rmag_0889 glycosyl transferase, family 2; family 2 glycosyl transferase 553277..554035 Pelodictyon phaeoclathratiforme BU-1 6461824 YP_002017497.1 CDS Ppha_0568 NC_011060.1 554032 555000 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cph:Cpha266_2616 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 554032..555000 Pelodictyon phaeoclathratiforme BU-1 6461823 YP_002017498.1 CDS Ppha_0569 NC_011060.1 555033 555593 D PFAM: sugar transferase; KEGG: cph:Cpha266_2615 sugar transferase; sugar transferase 555033..555593 Pelodictyon phaeoclathratiforme BU-1 6461822 YP_002017499.1 CDS Ppha_0570 NC_011060.1 555599 556579 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_2610 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 555599..556579 Pelodictyon phaeoclathratiforme BU-1 6461820 YP_002017500.1 CDS Ppha_0571 NC_011060.1 556586 557728 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_2608 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 556586..557728 Pelodictyon phaeoclathratiforme BU-1 6461818 YP_002017501.1 CDS Ppha_0572 NC_011060.1 558478 559071 D KEGG: cph:Cpha266_2607 acetyltransferase; acetyltransferase 558478..559071 Pelodictyon phaeoclathratiforme BU-1 6461815 YP_002017502.1 CDS Ppha_0573 NC_011060.1 559230 560444 D PFAM: glycosyl transferase group 1; KEGG: eba:ebA5893 predicted glycosyltransferase; group 1 glycosyl transferase 559230..560444 Pelodictyon phaeoclathratiforme BU-1 6461813 YP_002017503.1 CDS Ppha_0574 NC_011060.1 560453 561055 D PFAM: sugar transferase; KEGG: rrs:RoseRS_4262 undecaprenyl-phosphate galactose phosphotransferase; undecaprenyl-phosphate galactose phosphotransferase 560453..561055 Pelodictyon phaeoclathratiforme BU-1 6461812 YP_002017504.1 CDS Ppha_0575 NC_011060.1 561120 561362 D KEGG: pat:Patl_3073 hypothetical protein; hypothetical protein 561120..561362 Pelodictyon phaeoclathratiforme BU-1 6461810 YP_002017505.1 CDS Ppha_0576 NC_011060.1 561359 562684 D PFAM: AMP-dependent synthetase and ligase; KEGG: pat:Patl_3072 hypothetical protein; AMP-dependent synthetase and ligase 561359..562684 Pelodictyon phaeoclathratiforme BU-1 6461807 YP_002017506.1 CDS Ppha_0577 NC_011060.1 562681 563406 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pat:Patl_3071 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 562681..563406 Pelodictyon phaeoclathratiforme BU-1 6461806 YP_002017507.1 CDS Ppha_0578 NC_011060.1 563424 564026 D PFAM: transferase hexapeptide repeat containing protein; KEGG: bxe:Bxe_A2414 O-acyltransferase, CysE/LacA/LpxA/NodL family; transferase hexapeptide repeat containing protein 563424..564026 Pelodictyon phaeoclathratiforme BU-1 6461805 YP_002017508.1 CDS Ppha_0579 NC_011060.1 564100 565284 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rme:Rmet_2724 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 564100..565284 Pelodictyon phaeoclathratiforme BU-1 6461802 YP_002017509.1 CDS Ppha_0580 NC_011060.1 565295 565987 R KEGG: hch:HCH_03424 hypothetical protein; hypothetical protein complement(565295..565987) Pelodictyon phaeoclathratiforme BU-1 6461799 YP_002017510.1 CDS Ppha_0581 NC_011060.1 565968 566843 R KEGG: tbd:Tbd_1792 hypothetical protein; hypothetical protein complement(565968..566843) Pelodictyon phaeoclathratiforme BU-1 6461797 YP_002017511.1 CDS Ppha_0582 NC_011060.1 566843 567772 R KEGG: cte:CT0711 hypothetical protein; hypothetical protein complement(566843..567772) Pelodictyon phaeoclathratiforme BU-1 6461796 YP_002017512.1 CDS Ppha_0584 NC_011060.1 569731 570120 R KEGG: cte:CT0711 hypothetical protein; hypothetical protein complement(569731..570120) Pelodictyon phaeoclathratiforme BU-1 6461791 YP_002017513.1 CDS Ppha_0585 NC_011060.1 570117 570605 R KEGG: noc:Noc_0212 protein of unknown function DUF1555; hypothetical protein complement(570117..570605) Pelodictyon phaeoclathratiforme BU-1 6461788 YP_002017514.1 CDS Ppha_0586 NC_011060.1 570953 571891 R KEGG: pol:Bpro_1359 hypothetical protein; hypothetical protein complement(570953..571891) Pelodictyon phaeoclathratiforme BU-1 6461787 YP_002017515.1 CDS Ppha_0587 NC_011060.1 571882 572676 R KEGG: cch:Cag_0645 hypothetical protein; hypothetical protein complement(571882..572676) Pelodictyon phaeoclathratiforme BU-1 6461786 YP_002017516.1 CDS Ppha_0589 NC_011060.1 573962 575104 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: cph:Cpha266_2608 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 573962..575104 Pelodictyon phaeoclathratiforme BU-1 6461781 YP_002017517.1 CDS Ppha_0590 NC_011060.1 575171 575425 D KEGG: cph:Cpha266_2602 hypothetical protein; hypothetical protein 575171..575425 Pelodictyon phaeoclathratiforme BU-1 6461780 YP_002017518.1 CDS Ppha_0591 NC_011060.1 575422 575622 D KEGG: cph:Cpha266_2601 hypothetical protein; hypothetical protein 575422..575622 Pelodictyon phaeoclathratiforme BU-1 6461777 YP_002017519.1 CDS Ppha_0593 NC_011060.1 576182 576508 R PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0084 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(576182..576508) Pelodictyon phaeoclathratiforme BU-1 6461775 YP_002017520.1 CDS Ppha_0596 NC_011060.1 577171 578376 D KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 577171..578376 Pelodictyon phaeoclathratiforme BU-1 6461769 YP_002017521.1 CDS Ppha_0597 NC_011060.1 578711 579703 D KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 578711..579703 Pelodictyon phaeoclathratiforme BU-1 6461765 YP_002017522.1 CDS Ppha_0598 NC_011060.1 579782 580672 D KEGG: cch:Cag_1091 hypothetical protein; hypothetical protein 579782..580672 Pelodictyon phaeoclathratiforme BU-1 6461764 YP_002017523.1 CDS Ppha_0599 NC_011060.1 580881 581840 D KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 580881..581840 Pelodictyon phaeoclathratiforme BU-1 6461763 YP_002017524.1 CDS Ppha_0601 NC_011060.1 582398 582724 R PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0084 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(582398..582724) Pelodictyon phaeoclathratiforme BU-1 6461753 YP_002017525.1 CDS Ppha_0603 NC_011060.1 583088 584350 R PFAM: transposase IS4 family protein; KEGG: cph:Cpha266_0352 transposase, IS4 family protein; transposase IS4 family protein complement(583088..584350) Pelodictyon phaeoclathratiforme BU-1 6461750 YP_002017526.1 CDS Ppha_0605 NC_011060.1 585353 585643 D SMART: helix-turn-helix domain protein; KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain protein; XRE family transcriptional regulator 585353..585643 Pelodictyon phaeoclathratiforme BU-1 6461746 YP_002017527.1 CDS Ppha_0607 NC_011060.1 586419 586634 D KEGG: cph:Cpha266_2604 hypothetical protein; hypothetical protein 586419..586634 Pelodictyon phaeoclathratiforme BU-1 6461736 YP_002017528.1 CDS Ppha_0608 NC_011060.1 586649 587044 D PFAM: PilT protein domain protein; KEGG: cch:Cag_1292 hypothetical protein; PilT protein domain-containing protein 586649..587044 Pelodictyon phaeoclathratiforme BU-1 6461733 YP_002017529.1 CDS Ppha_0610 NC_011060.1 587428 587940 D hypothetical protein 587428..587940 Pelodictyon phaeoclathratiforme BU-1 6461731 YP_002017530.1 CDS Ppha_0611 NC_011060.1 588301 588483 R hypothetical protein complement(588301..588483) Pelodictyon phaeoclathratiforme BU-1 6461730 YP_002017531.1 CDS Ppha_0612 NC_011060.1 588690 589520 R PFAM: legume lectin beta domain; KEGG: dar:Daro_1504 legume lectin, beta domain:protein of unknown function DUF1555; legume lectin beta domain complement(588690..589520) Pelodictyon phaeoclathratiforme BU-1 6461729 YP_002017532.1 CDS Ppha_0613 NC_011060.1 589667 590449 R KEGG: nar:Saro_0424 hypothetical protein; hypothetical protein complement(589667..590449) Pelodictyon phaeoclathratiforme BU-1 6461728 YP_002017533.1 CDS Ppha_0614 NC_011060.1 590660 591166 R KEGG: cph:Cpha266_1384 transposase family protein; transposase family protein complement(590660..591166) Pelodictyon phaeoclathratiforme BU-1 6461724 YP_002017534.1 CDS Ppha_0615 NC_011060.1 591471 592373 D KEGG: cch:Cag_1091 hypothetical protein; hypothetical protein 591471..592373 Pelodictyon phaeoclathratiforme BU-1 6461723 YP_002017535.1 CDS Ppha_0616 NC_011060.1 592374 593528 D KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein 592374..593528 Pelodictyon phaeoclathratiforme BU-1 6461722 YP_002017536.1 CDS Ppha_0617 NC_011060.1 593560 593835 D KEGG: cch:Cag_0661 hypothetical protein; hypothetical protein 593560..593835 Pelodictyon phaeoclathratiforme BU-1 6461720 YP_002017537.1 CDS Ppha_0618 NC_011060.1 593837 594001 D hypothetical protein 593837..594001 Pelodictyon phaeoclathratiforme BU-1 6461719 YP_002017538.1 CDS Ppha_0619 NC_011060.1 594004 594195 D KEGG: cch:Cag_0684 hypothetical protein; hypothetical protein 594004..594195 Pelodictyon phaeoclathratiforme BU-1 6461718 YP_002017539.1 CDS Ppha_0622 NC_011060.1 596537 596827 D hypothetical protein 596537..596827 Pelodictyon phaeoclathratiforme BU-1 6461715 YP_002017540.1 CDS Ppha_0623 NC_011060.1 596939 598237 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: cte:CT0227 UDP-glucose/GDP-mannose dehydrogenase family protein; nucleotide sugar dehydrogenase 596939..598237 Pelodictyon phaeoclathratiforme BU-1 6461714 YP_002017541.1 CDS Ppha_0624 NC_011060.1 599107 599499 D KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 599107..599499 Pelodictyon phaeoclathratiforme BU-1 6461713 YP_002017542.1 CDS Ppha_0625 NC_011060.1 600029 600775 D PFAM: protein of unknown function DUF218; KEGG: cte:CT0624 hypothetical protein; hypothetical protein 600029..600775 Pelodictyon phaeoclathratiforme BU-1 6461711 YP_002017543.1 CDS Ppha_0626 NC_011060.1 601035 601625 D PFAM: KOW domain protein; NGN domain protein; KEGG: cch:Cag_0149 NusG antitermination factor; NusG antitermination factor 601035..601625 Pelodictyon phaeoclathratiforme BU-1 6461705 YP_002017544.1 CDS Ppha_0627 NC_011060.1 601745 602998 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0514 major facilitator superfamily MFS_1; major facilitator superfamily protein 601745..602998 Pelodictyon phaeoclathratiforme BU-1 6461696 YP_002017545.1 CDS Ppha_0628 NC_011060.1 603068 605908 R TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: plt:Plut_1662 excinuclease ABC, A subunit; excinuclease ABC subunit A complement(603068..605908) Pelodictyon phaeoclathratiforme BU-1 6461695 YP_002017546.1 CDS Ppha_0629 NC_011060.1 606154 608904 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(606154..608904) Pelodictyon phaeoclathratiforme BU-1 6461692 YP_002017547.1 CDS Ppha_0630 NC_011060.1 609055 609936 D PFAM: inner-membrane translocator; KEGG: pvi:Cvib_1448 inner-membrane translocator; inner-membrane translocator 609055..609936 Pelodictyon phaeoclathratiforme BU-1 6461691 YP_002017548.1 CDS Ppha_0632 NC_011060.1 610441 632142 D TIGRFAM: outer membrane adhesin like proteiin; KEGG: cph:Cpha266_1846 outer membrane adhesin like proteiin; outer membrane adhesin-like protein 610441..632142 Pelodictyon phaeoclathratiforme BU-1 6461685 YP_002017549.1 CDS Ppha_0633 NC_011060.1 632142 633596 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1845 type I secretion outer membrane protein, TolC family; TolC family type I secretion outer membrane protein 632142..633596 Pelodictyon phaeoclathratiforme BU-1 6461683 YP_002017550.1 CDS Ppha_0634 NC_011060.1 633655 634368 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_1844 hypothetical protein; PpiC-type peptidyl-prolyl cis-trans isomerase 633655..634368 Pelodictyon phaeoclathratiforme BU-1 6461681 YP_002017551.1 CDS Ppha_0635 NC_011060.1 634425 637475 D PFAM: cyclic nucleotide-binding; ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1843 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter 634425..637475 Pelodictyon phaeoclathratiforme BU-1 6461674 YP_002017552.1 CDS Ppha_0636 NC_011060.1 637472 638461 D PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1842 secretion protein HlyD family protein; secretion protein HlyD family protein 637472..638461 Pelodictyon phaeoclathratiforme BU-1 6461671 YP_002017553.1 CDS Ppha_0637 NC_011060.1 638569 652038 D PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 hypothetical protein-containing protein; hypothetical protein 638569..652038 Pelodictyon phaeoclathratiforme BU-1 6461661 YP_002017554.1 CDS Ppha_0638 NC_011060.1 652082 652864 D PFAM: glycosyl transferase family 2; KEGG: mrd:Mrad2831_1547 hypothetical protein; family 2 glycosyl transferase 652082..652864 Pelodictyon phaeoclathratiforme BU-1 6461655 YP_002017555.1 CDS Ppha_0639 NC_011060.1 653069 653818 D KEGG: gfo:GFO_0545 hypothetical protein; hypothetical protein 653069..653818 Pelodictyon phaeoclathratiforme BU-1 6461654 YP_002017556.1 CDS Ppha_0640 NC_011060.1 654295 654807 D KEGG: sit:TM1040_1486 hypothetical protein; hypothetical protein 654295..654807 Pelodictyon phaeoclathratiforme BU-1 6461652 YP_002017557.1 CDS Ppha_0641 NC_011060.1 655353 658637 D PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_4; hypothetical protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 hypothetical protein-containing protein; hypothetical protein 655353..658637 Pelodictyon phaeoclathratiforme BU-1 6461651 YP_002017558.1 CDS Ppha_0642 NC_011060.1 658936 659619 D KEGG: cph:Cpha266_1326 pentapeptide repeat protein; hypothetical protein 658936..659619 Pelodictyon phaeoclathratiforme BU-1 6461647 YP_002017559.1 CDS Ppha_0643 NC_011060.1 659918 660415 D KEGG: cph:Cpha266_1326 pentapeptide repeat protein; hypothetical protein 659918..660415 Pelodictyon phaeoclathratiforme BU-1 6461640 YP_002017560.1 CDS Ppha_0644 NC_011060.1 660682 661224 D PFAM: isochorismatase hydrolase; KEGG: cph:Cpha266_0525 isochorismatase hydrolase; isochorismatase hydrolase 660682..661224 Pelodictyon phaeoclathratiforme BU-1 6461639 YP_002017561.1 CDS Ppha_0645 NC_011060.1 661279 662346 R KEGG: cch:Cag_0169 tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(661279..662346) Pelodictyon phaeoclathratiforme BU-1 6461637 YP_002017562.1 CDS Ppha_0646 NC_011060.1 662339 662950 R PFAM: protein of unknown function DUF374; KEGG: cch:Cag_0170 hypothetical protein; hypothetical protein complement(662339..662950) Pelodictyon phaeoclathratiforme BU-1 6461636 YP_002017563.1 CDS Ppha_0647 NC_011060.1 663127 664407 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 663127..664407 Pelodictyon phaeoclathratiforme BU-1 6461631 YP_002017564.1 CDS Ppha_0648 NC_011060.1 664429 664860 D KEGG: cch:Cag_0172 hypothetical protein; hypothetical protein 664429..664860 Pelodictyon phaeoclathratiforme BU-1 6461624 YP_002017565.1 CDS Ppha_0649 NC_011060.1 664952 666430 D PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: cch:Cag_0173 carbamoyl-phosphate synthase, medium subunit; Carbamoyl-phosphate synthase L chain ATP-binding 664952..666430 Pelodictyon phaeoclathratiforme BU-1 6461621 YP_002017566.1 CDS trpC NC_011060.1 666440 667210 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 666440..667210 Pelodictyon phaeoclathratiforme BU-1 6461620 YP_002017567.1 CDS Ppha_0651 NC_011060.1 667197 667862 R PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'-phosphate decarboxylase; KEGG: cch:Cag_0175 ribulose-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase complement(667197..667862) Pelodictyon phaeoclathratiforme BU-1 6461619 YP_002017568.1 CDS Ppha_0652 NC_011060.1 667908 670112 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cph:Cpha266_0533 surface antigen (D15); surface antigen (D15) complement(667908..670112) Pelodictyon phaeoclathratiforme BU-1 6461617 YP_002017569.1 CDS Ppha_0653 NC_011060.1 670132 670359 R KEGG: plt:Plut_1647 hypothetical protein; hypothetical protein complement(670132..670359) Pelodictyon phaeoclathratiforme BU-1 6461614 YP_002017570.1 CDS Ppha_0654 NC_011060.1 670384 671208 R PFAM: Peptidase M23; KEGG: cph:Cpha266_0535 peptidase M23B; peptidase M23 complement(670384..671208) Pelodictyon phaeoclathratiforme BU-1 6461610 YP_002017571.1 CDS Ppha_0655 NC_011060.1 671248 674082 R KEGG: plt:Plut_1645 DNA polymerase A; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(671248..674082) Pelodictyon phaeoclathratiforme BU-1 6461609 YP_002017572.1 CDS Ppha_0656 NC_011060.1 674079 674909 R PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: cph:Cpha266_0537 prephenate dehydratase; Prephenate dehydratase complement(674079..674909) Pelodictyon phaeoclathratiforme BU-1 6461608 YP_002017573.1 CDS Ppha_0657 NC_011060.1 675038 675790 D PFAM: protein of unknown function DUF28; KEGG: cch:Cag_0165 hypothetical protein; hypothetical protein 675038..675790 Pelodictyon phaeoclathratiforme BU-1 6461606 YP_002017574.1 CDS Ppha_0658 NC_011060.1 675795 676370 D KEGG: cph:Cpha266_0539 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 675795..676370 Pelodictyon phaeoclathratiforme BU-1 6461604 YP_002017575.1 CDS Ppha_0659 NC_011060.1 676381 676935 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: plt:Plut_1641 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 676381..676935 Pelodictyon phaeoclathratiforme BU-1 6461597 YP_002017576.1 CDS Ppha_0660 NC_011060.1 677334 678737 R catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase complement(677334..678737) Pelodictyon phaeoclathratiforme BU-1 6461593 YP_002017577.1 CDS Ppha_0661 NC_011060.1 678887 679684 R PFAM: inositol monophosphatase; KEGG: cph:Cpha266_0543 inositol-phosphate phosphatase; inositol-phosphate phosphatase complement(678887..679684) Pelodictyon phaeoclathratiforme BU-1 6461592 YP_002017578.1 CDS Ppha_0662 NC_011060.1 679836 680312 D PFAM: TspO/MBR family protein; KEGG: cph:Cpha266_0544 TspO and MBR like proteins; TspO and MBR-like protein 679836..680312 Pelodictyon phaeoclathratiforme BU-1 6461591 YP_002017579.1 CDS Ppha_0663 NC_011060.1 680401 680874 R KEGG: cph:Cpha266_0064 hypothetical protein; hypothetical protein complement(680401..680874) Pelodictyon phaeoclathratiforme BU-1 6461590 YP_002017580.1 CDS Ppha_0664 NC_011060.1 681089 683092 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(681089..683092) Pelodictyon phaeoclathratiforme BU-1 6461587 YP_002017581.1 CDS leuS NC_011060.1 683275 685698 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(683275..685698) Pelodictyon phaeoclathratiforme BU-1 6461585 YP_002017582.1 CDS Ppha_0666 NC_011060.1 685791 687977 R KEGG: cch:Cag_1689 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase complement(685791..687977) Pelodictyon phaeoclathratiforme BU-1 6461580 YP_002017583.1 CDS panC NC_011060.1 688092 688943 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(688092..688943) Pelodictyon phaeoclathratiforme BU-1 6461575 YP_002017584.1 CDS Ppha_0668 NC_011060.1 688927 689661 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: plt:Plut_1633 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(688927..689661) Pelodictyon phaeoclathratiforme BU-1 6461573 YP_002017585.1 CDS Ppha_0669 NC_011060.1 689759 690745 D KEGG: plt:Plut_1632 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 689759..690745 Pelodictyon phaeoclathratiforme BU-1 6461572 YP_002017586.1 CDS Ppha_0670 NC_011060.1 690747 692540 D KEGG: cch:Cag_1704 peptidase S49, protease IV; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 690747..692540 Pelodictyon phaeoclathratiforme BU-1 6461571 YP_002017587.1 CDS Ppha_0671 NC_011060.1 692578 693912 R KEGG: cph:Cpha266_0557 hypothetical protein; hypothetical protein complement(692578..693912) Pelodictyon phaeoclathratiforme BU-1 6461570 YP_002017588.1 CDS Ppha_0672 NC_011060.1 694042 695598 R KEGG: cch:Cag_1757 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(694042..695598) Pelodictyon phaeoclathratiforme BU-1 6461569 YP_002017589.1 CDS Ppha_0673 NC_011060.1 695942 697006 D PFAM: acyltransferase 3; KEGG: abo:ABO_0912 acetyltransferase; acyltransferase 3 695942..697006 Pelodictyon phaeoclathratiforme BU-1 6461568 YP_002017590.1 CDS Ppha_0675 NC_011060.1 697320 698570 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cph:Cpha266_0073 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein 697320..698570 Pelodictyon phaeoclathratiforme BU-1 6461562 YP_002017591.1 CDS Ppha_0676 NC_011060.1 698866 700170 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sfu:Sfum_2797 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 698866..700170 Pelodictyon phaeoclathratiforme BU-1 6461561 YP_002017592.1 CDS Ppha_0677 NC_011060.1 700238 701167 D SMART: HNH nuclease; KEGG: sfu:Sfum_2799 HNH endonuclease; HNH nuclease 700238..701167 Pelodictyon phaeoclathratiforme BU-1 6461560 YP_002017593.1 CDS Ppha_0681 NC_011060.1 701944 702270 R KEGG: cbd:COXBU7E912_0654 hypothetical protein; hypothetical protein complement(701944..702270) Pelodictyon phaeoclathratiforme BU-1 6461548 YP_002017594.1 CDS Ppha_0682 NC_011060.1 702270 702539 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cbs:COXBURSA331_A0759 prevent-host-death family protein; prevent-host-death family protein complement(702270..702539) Pelodictyon phaeoclathratiforme BU-1 6461547 YP_002017595.1 CDS Ppha_0683 NC_011060.1 702819 705587 R PFAM: phosphoenolpyruvate carboxylase; KEGG: cph:Cpha266_0559 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(702819..705587) Pelodictyon phaeoclathratiforme BU-1 6461546 YP_002017596.1 CDS Ppha_0684 NC_011060.1 705839 706480 D KEGG: pvi:Cvib_1418 photosystem P840 reaction center cytochrome c-551; photosystem P840 reaction center cytochrome c-551 705839..706480 Pelodictyon phaeoclathratiforme BU-1 6461545 YP_002017597.1 CDS Ppha_0685 NC_011060.1 706556 706906 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(706556..706906) Pelodictyon phaeoclathratiforme BU-1 6461544 YP_002017598.1 CDS Ppha_0686 NC_011060.1 707053 707763 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0562 methyltransferase type 12; type 12 methyltransferase 707053..707763 Pelodictyon phaeoclathratiforme BU-1 6461543 YP_002017599.1 CDS Ppha_0687 NC_011060.1 707760 708623 D KEGG: cph:Cpha266_0563 hypothetical protein; hypothetical protein 707760..708623 Pelodictyon phaeoclathratiforme BU-1 6461539 YP_002017600.1 CDS Ppha_0688 NC_011060.1 708620 709630 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cch:Cag_1762 site-specific recombinase, phage/XerD family; integrase family protein 708620..709630 Pelodictyon phaeoclathratiforme BU-1 6461538 YP_002017601.1 CDS Ppha_0689 NC_011060.1 709708 710028 D KEGG: cph:Cpha266_0565 hypothetical protein; hypothetical protein 709708..710028 Pelodictyon phaeoclathratiforme BU-1 6461533 YP_002017602.1 CDS Ppha_0690 NC_011060.1 710120 711115 D catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 710120..711115 Pelodictyon phaeoclathratiforme BU-1 6461532 YP_002017603.1 CDS Ppha_0691 NC_011060.1 711108 712910 D PFAM: extracellular solute-binding protein family 5; KEGG: cph:Cpha266_0567 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 711108..712910 Pelodictyon phaeoclathratiforme BU-1 6461531 YP_002017604.1 CDS Ppha_0692 NC_011060.1 712917 713882 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: plt:Plut_1620 peptide ABC transporter, permease; binding-protein-dependent transport system inner membrane protein 712917..713882 Pelodictyon phaeoclathratiforme BU-1 6461530 YP_002017605.1 CDS ruvB NC_011060.1 713926 714960 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 713926..714960 Pelodictyon phaeoclathratiforme BU-1 6461529 YP_002017606.1 CDS Ppha_0694 NC_011060.1 714941 716674 D PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0570 hypothetical protein; hypothetical protein 714941..716674 Pelodictyon phaeoclathratiforme BU-1 6461526 YP_002017607.1 CDS Ppha_0695 NC_011060.1 716796 720332 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0571 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(716796..720332) Pelodictyon phaeoclathratiforme BU-1 6461521 YP_002017608.1 CDS Ppha_0696 NC_011060.1 720629 721375 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cch:Cag_1731 RNA methyltransferase TrmH, group 3; TrmH family RNA methyltransferase 720629..721375 Pelodictyon phaeoclathratiforme BU-1 6461519 YP_002017609.1 CDS Ppha_0697 NC_011060.1 721495 721878 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 721495..721878 Pelodictyon phaeoclathratiforme BU-1 6461518 YP_002017610.1 CDS Ppha_0698 NC_011060.1 721882 723222 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 721882..723222 Pelodictyon phaeoclathratiforme BU-1 6461515 YP_002017611.1 CDS Ppha_0699 NC_011060.1 723302 724192 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(723302..724192) Pelodictyon phaeoclathratiforme BU-1 6461512 YP_002017612.1 CDS Ppha_0700 NC_011060.1 724585 728844 D KEGG: plt:Plut_2011 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 724585..728844 Pelodictyon phaeoclathratiforme BU-1 6461511 YP_002017613.1 CDS Ppha_0701 NC_011060.1 728864 730567 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cph:Cpha266_0576 DNA repair protein RecN; DNA repair protein RecN complement(728864..730567) Pelodictyon phaeoclathratiforme BU-1 6461509 YP_002017614.1 CDS Ppha_0702 NC_011060.1 730586 730795 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: cph:Cpha266_0577 twin-arginine translocation protein, TatA/E family subunit; twin-arginine translocation protein, TatA/E family subunit complement(730586..730795) Pelodictyon phaeoclathratiforme BU-1 6461507 YP_002017615.1 CDS Ppha_0703 NC_011060.1 730914 731552 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(730914..731552) Pelodictyon phaeoclathratiforme BU-1 6461504 YP_002017616.1 CDS Ppha_0704 NC_011060.1 731675 732661 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cch:Cag_1746 MesJ protein; tRNA(Ile)-lysidine synthetase 731675..732661 Pelodictyon phaeoclathratiforme BU-1 6461501 YP_002017617.1 CDS Ppha_0705 NC_011060.1 732735 733775 R KEGG: cph:Cpha266_0580 hypothetical protein; hypothetical protein complement(732735..733775) Pelodictyon phaeoclathratiforme BU-1 6461495 YP_002017618.1 CDS Ppha_0706 NC_011060.1 733787 734227 R PFAM: ribonuclease H; KEGG: cph:Cpha266_0581 ribonuclease H; ribonuclease H complement(733787..734227) Pelodictyon phaeoclathratiforme BU-1 6461491 YP_002017619.1 CDS rpmB NC_011060.1 734310 734528 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(734310..734528) Pelodictyon phaeoclathratiforme BU-1 6461490 YP_002017620.1 CDS Ppha_0708 NC_011060.1 734601 735599 R TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_0583 bacteriochlorophyll/chlorophyll a synthase; bacteriochlorophyll/chlorophyll a synthase complement(734601..735599) Pelodictyon phaeoclathratiforme BU-1 6461488 YP_002017621.1 CDS trpD NC_011060.1 735667 736722 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(735667..736722) Pelodictyon phaeoclathratiforme BU-1 6461487 YP_002017622.1 CDS Ppha_0710 NC_011060.1 736879 737973 D PFAM: creatinase; peptidase M24; KEGG: cph:Cpha266_0585 peptidase M24; peptidase M24 736879..737973 Pelodictyon phaeoclathratiforme BU-1 6461486 YP_002017623.1 CDS Ppha_0711 NC_011060.1 737927 738166 D PFAM: CutA1 divalent ion tolerance protein; KEGG: cph:Cpha266_0586 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 737927..738166 Pelodictyon phaeoclathratiforme BU-1 6461485 YP_002017624.1 CDS Ppha_0712 NC_011060.1 738312 738998 R KEGG: dde:Dde_1416 hypothetical protein; hypothetical protein complement(738312..738998) Pelodictyon phaeoclathratiforme BU-1 6461476 YP_002017625.1 CDS Ppha_0713 NC_011060.1 739029 740023 R KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein complement(join(739029..739592,739592..740023)) Pelodictyon phaeoclathratiforme BU-1 6461474 YP_002017626.1 CDS Ppha_0714 NC_011060.1 740063 743467 R PFAM: Hemolysin-type calcium-binding region; Cadherin; KEGG: mmr:Mmar10_1504 cadherin; cadherin complement(740063..743467) Pelodictyon phaeoclathratiforme BU-1 6461470 YP_002017627.1 CDS Ppha_0715 NC_011060.1 743669 744838 R KEGG: cph:Cpha266_0587 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(743669..744838) Pelodictyon phaeoclathratiforme BU-1 6461469 YP_002017628.1 CDS Ppha_0716 NC_011060.1 744856 745767 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(744856..745767) Pelodictyon phaeoclathratiforme BU-1 6461468 YP_002017629.1 CDS Ppha_0717 NC_011060.1 745871 747076 R PFAM: phosphofructokinase; KEGG: cch:Cag_1780 phosphofructokinase; phosphofructokinase complement(745871..747076) Pelodictyon phaeoclathratiforme BU-1 6461465 YP_002017630.1 CDS Ppha_0718 NC_011060.1 747261 748535 D PFAM: protein of unknown function DUF214; KEGG: cch:Cag_1781 lipoprotein releasing system; hypothetical protein 747261..748535 Pelodictyon phaeoclathratiforme BU-1 6461464 YP_002017631.1 CDS ispF NC_011060.1 748532 749005 R catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(748532..749005) Pelodictyon phaeoclathratiforme BU-1 6461463 YP_002017632.1 CDS Ppha_0720 NC_011060.1 749226 750338 D KEGG: cph:Cpha266_0592 hypothetical protein; hypothetical protein 749226..750338 Pelodictyon phaeoclathratiforme BU-1 6461462 YP_002017633.1 CDS Ppha_0721 NC_011060.1 750335 751258 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: cch:Cag_1783 dihydroorotate dehydrogenase 1; dihydroorotate dehydrogenase family protein complement(750335..751258) Pelodictyon phaeoclathratiforme BU-1 6461461 YP_002017634.1 CDS Ppha_0722 NC_011060.1 751349 753469 R KEGG: pvi:Cvib_1386 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase complement(751349..753469) Pelodictyon phaeoclathratiforme BU-1 6461459 YP_002017635.1 CDS Ppha_0723 NC_011060.1 753606 754481 D PFAM: metallophosphoesterase; KEGG: plt:Plut_1594 hypothetical protein; metallophosphoesterase 753606..754481 Pelodictyon phaeoclathratiforme BU-1 6461457 YP_002017636.1 CDS Ppha_0724 NC_011060.1 754518 755003 R KEGG: plt:Plut_1593 hypothetical protein; hypothetical protein complement(754518..755003) Pelodictyon phaeoclathratiforme BU-1 6461456 YP_002017637.1 CDS Ppha_0725 NC_011060.1 755067 756923 R PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: cph:Cpha266_0599 carbamoyl-phosphate synthase large subunit; Carbamoyl-phosphate synthetase large chain domain-containing protein complement(755067..756923) Pelodictyon phaeoclathratiforme BU-1 6461455 YP_002017638.1 CDS Ppha_0726 NC_011060.1 757155 758414 D KEGG: cph:Cpha266_0600 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 757155..758414 Pelodictyon phaeoclathratiforme BU-1 6461440 YP_002017639.1 CDS glyA NC_011060.1 758444 759760 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 758444..759760 Pelodictyon phaeoclathratiforme BU-1 6461436 YP_002017640.1 CDS Ppha_0728 NC_011060.1 759818 761713 R KEGG: cph:Cpha266_0602 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(759818..761713) Pelodictyon phaeoclathratiforme BU-1 6461426 YP_002017641.1 CDS Ppha_0729 NC_011060.1 762014 762760 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 762014..762760 Pelodictyon phaeoclathratiforme BU-1 6461425 YP_002017642.1 CDS Ppha_0730 NC_011060.1 762767 763300 D KEGG: cph:Cpha266_0604 hypothetical protein; hypothetical protein 762767..763300 Pelodictyon phaeoclathratiforme BU-1 6461423 YP_002017643.1 CDS Ppha_0731 NC_011060.1 763303 763827 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cph:Cpha266_0605 biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 763303..763827 Pelodictyon phaeoclathratiforme BU-1 6461421 YP_002017644.1 CDS Ppha_0732 NC_011060.1 763863 764669 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like; TonB family protein 763863..764669 Pelodictyon phaeoclathratiforme BU-1 6461418 YP_002017645.1 CDS Ppha_0733 NC_011060.1 764657 764869 R KEGG: cph:Cpha266_0608 hypothetical protein; hypothetical protein complement(764657..764869) Pelodictyon phaeoclathratiforme BU-1 6461412 YP_002017646.1 CDS Ppha_0734 NC_011060.1 764883 766100 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(764883..766100) Pelodictyon phaeoclathratiforme BU-1 6461410 YP_002017647.1 CDS Ppha_0735 NC_011060.1 766553 770158 D PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; hypothetical protein 766553..770158 Pelodictyon phaeoclathratiforme BU-1 6461409 YP_002017648.1 CDS Ppha_0736 NC_011060.1 770261 770485 R KEGG: cph:Cpha266_0610 hypothetical protein; hypothetical protein complement(770261..770485) Pelodictyon phaeoclathratiforme BU-1 6461407 YP_002017649.1 CDS Ppha_0737 NC_011060.1 770485 771789 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_0611 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(770485..771789) Pelodictyon phaeoclathratiforme BU-1 6461405 YP_002017650.1 CDS Ppha_0738 NC_011060.1 771965 772465 R PFAM: protein of unknown function DUF985; KEGG: cch:Cag_0287 hypothetical protein; hypothetical protein complement(771965..772465) Pelodictyon phaeoclathratiforme BU-1 6461404 YP_002017651.1 CDS Ppha_0739 NC_011060.1 772452 772979 R KEGG: pvi:Cvib_1371 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit complement(772452..772979) Pelodictyon phaeoclathratiforme BU-1 6461401 YP_002017652.1 CDS Ppha_0740 NC_011060.1 773245 774663 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 773245..774663 Pelodictyon phaeoclathratiforme BU-1 6461394 YP_002017653.1 CDS Ppha_0741 NC_011060.1 774978 776231 D KEGG: bxe:Bxe_B0298 phage resistance protein; phage resistance protein 774978..776231 Pelodictyon phaeoclathratiforme BU-1 6461393 YP_002017654.1 CDS Ppha_0743 NC_011060.1 776460 779459 D KEGG: mfa:Mfla_1215 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; HsdR family type I site-specific deoxyribonuclease 776460..779459 Pelodictyon phaeoclathratiforme BU-1 6461389 YP_002017655.1 CDS Ppha_0744 NC_011060.1 779449 779706 D KEGG: sbl:Sbal_3718 protein of unknown function DUF1016; hypothetical protein 779449..779706 Pelodictyon phaeoclathratiforme BU-1 6461387 YP_002017656.1 CDS Ppha_0745 NC_011060.1 779703 780938 D PFAM: restriction modification system DNA specificity domain; KEGG: vei:Veis_3549 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain 779703..780938 Pelodictyon phaeoclathratiforme BU-1 6461386 YP_002017657.1 CDS Ppha_0746 NC_011060.1 780938 781456 D KEGG: dac:Daci_2437 hypothetical protein; hypothetical protein 780938..781456 Pelodictyon phaeoclathratiforme BU-1 6461383 YP_002017658.1 CDS Ppha_0747 NC_011060.1 781453 781653 D KEGG: dac:Daci_2436 hypothetical protein; hypothetical protein 781453..781653 Pelodictyon phaeoclathratiforme BU-1 6461381 YP_002017659.1 CDS Ppha_0748 NC_011060.1 781749 781979 D KEGG: cch:Cag_1388 hypothetical protein; hypothetical protein 781749..781979 Pelodictyon phaeoclathratiforme BU-1 6461380 YP_002017660.1 CDS Ppha_0749 NC_011060.1 782165 783031 D KEGG: cch:Cag_1091 hypothetical protein; hypothetical protein 782165..783031 Pelodictyon phaeoclathratiforme BU-1 6461379 YP_002017661.1 CDS Ppha_0750 NC_011060.1 783099 784733 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: vei:Veis_3546 type I restriction-modification system, M subunit; type I restriction-modification system, M subunit 783099..784733 Pelodictyon phaeoclathratiforme BU-1 6461377 YP_002017662.1 CDS Ppha_0751 NC_011060.1 785199 785333 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: dol:Dole_2718 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 785199..785333 Pelodictyon phaeoclathratiforme BU-1 6461375 YP_002017663.1 CDS Ppha_0752 NC_011060.1 785466 786293 D hypothetical protein 785466..786293 Pelodictyon phaeoclathratiforme BU-1 6461374 YP_002017664.1 CDS Ppha_0754 NC_011060.1 787269 787511 D TIGRFAM: prevent-host-death family protein; KEGG: lic:LIC12712 hypothetical protein; prevent-host-death family protein 787269..787511 Pelodictyon phaeoclathratiforme BU-1 6461364 YP_002017665.1 CDS Ppha_0756 NC_011060.1 788109 788312 R KEGG: swo:Swol_2490 hypothetical protein; hypothetical protein complement(788109..788312) Pelodictyon phaeoclathratiforme BU-1 6461362 YP_002017666.1 CDS Ppha_0757 NC_011060.1 788309 788749 R KEGG: ajs:Ajs_3020 hypothetical protein; hypothetical protein complement(788309..788749) Pelodictyon phaeoclathratiforme BU-1 6461358 YP_002017667.1 CDS Ppha_0758 NC_011060.1 789166 789855 D PFAM: regulatory protein TetR; KEGG: rrs:RoseRS_0017 transcriptional regulator, TetR family; TetR family transcriptional regulator 789166..789855 Pelodictyon phaeoclathratiforme BU-1 6461357 YP_002017668.1 CDS Ppha_0759 NC_011060.1 789858 791168 D KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 789858..791168 Pelodictyon phaeoclathratiforme BU-1 6461352 YP_002017669.1 CDS Ppha_0760 NC_011060.1 791171 792880 D PFAM: protein of unknown function DUF1703; KEGG: cch:Cag_0755 hypothetical protein; hypothetical protein 791171..792880 Pelodictyon phaeoclathratiforme BU-1 6461351 YP_002017670.1 CDS Ppha_0761 NC_011060.1 792943 794832 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: lipolytic protein G-D-S-L family; Autotransporter beta- domain protein; KEGG: rpe:RPE_3830 outer membrane autotransporter barrel domain; outer membrane autotransporter barrel domain-containing protein complement(792943..794832) Pelodictyon phaeoclathratiforme BU-1 6461348 YP_002017671.1 CDS Ppha_0762 NC_011060.1 795333 796469 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cph:Cpha266_0615 oxidoreductase domain protein; oxidoreductase domain-containing protein 795333..796469 Pelodictyon phaeoclathratiforme BU-1 6461344 YP_002017672.1 CDS Ppha_0763 NC_011060.1 796475 796807 D PFAM: small multidrug resistance protein; KEGG: cch:Cag_0283 SugE protein; small multidrug resistance protein 796475..796807 Pelodictyon phaeoclathratiforme BU-1 6461343 YP_002017673.1 CDS Ppha_0764 NC_011060.1 796815 798773 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0618 ABC transporter related; ABC transporter-like protein complement(796815..798773) Pelodictyon phaeoclathratiforme BU-1 6461340 YP_002017674.1 CDS Ppha_0765 NC_011060.1 799148 799270 D hypothetical protein 799148..799270 Pelodictyon phaeoclathratiforme BU-1 6461339 YP_002017675.1 CDS Ppha_0766 NC_011060.1 799322 800089 D KEGG: cph:Cpha266_1359 hypothetical protein; hypothetical protein 799322..800089 Pelodictyon phaeoclathratiforme BU-1 6461338 YP_002017676.1 CDS Ppha_0767 NC_011060.1 800161 800328 D hypothetical protein 800161..800328 Pelodictyon phaeoclathratiforme BU-1 6461336 YP_002017677.1 CDS Ppha_0768 NC_011060.1 800561 801832 D PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0620 outer membrane efflux protein; outer membrane efflux protein 800561..801832 Pelodictyon phaeoclathratiforme BU-1 6461335 YP_002017678.1 CDS Ppha_0769 NC_011060.1 801825 802793 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0621 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 801825..802793 Pelodictyon phaeoclathratiforme BU-1 6461332 YP_002017679.1 CDS Ppha_0770 NC_011060.1 802790 804760 D PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cph:Cpha266_0622 ABC transporter related; ABC transporter-like protein 802790..804760 Pelodictyon phaeoclathratiforme BU-1 6461331 YP_002017680.1 CDS Ppha_0771 NC_011060.1 805111 805590 D KEGG: cph:Cpha266_1944 Legionella vir region protein; vir region protein-like protein 805111..805590 Pelodictyon phaeoclathratiforme BU-1 6461330 YP_002017681.1 CDS Ppha_0772 NC_011060.1 805748 806680 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0508 methyltransferase type 12; type 12 methyltransferase 805748..806680 Pelodictyon phaeoclathratiforme BU-1 6461329 YP_002017682.1 CDS Ppha_0773 NC_011060.1 806675 808099 R KEGG: sfu:Sfum_1855 amidohydrolase 2; hypothetical protein complement(806675..808099) Pelodictyon phaeoclathratiforme BU-1 6461326 YP_002017683.1 CDS Ppha_0774 NC_011060.1 808392 808811 D PFAM: heat shock protein Hsp20; KEGG: pvi:Cvib_0315 heat shock protein HSP20; heat shock protein Hsp20 808392..808811 Pelodictyon phaeoclathratiforme BU-1 6461325 YP_002017684.1 CDS Ppha_0775 NC_011060.1 808842 809042 D KEGG: cph:Cpha266_0991 hypothetical protein; hypothetical protein 808842..809042 Pelodictyon phaeoclathratiforme BU-1 6461324 YP_002017685.1 CDS sucC NC_011060.1 809142 810320 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(809142..810320) Pelodictyon phaeoclathratiforme BU-1 6461323 YP_002017686.1 CDS Ppha_0777 NC_011060.1 810463 810930 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: pvi:Cvib_0554 tRNA-adenosine deaminase; zinc-binding CMP/dCMP deaminase 810463..810930 Pelodictyon phaeoclathratiforme BU-1 6461322 YP_002017687.1 CDS Ppha_0778 NC_011060.1 810963 811964 R KEGG: pvi:Cvib_0555 hypothetical protein; hypothetical protein complement(810963..811964) Pelodictyon phaeoclathratiforme BU-1 6461320 YP_002017688.1 CDS Ppha_0779 NC_011060.1 811979 813235 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: pvi:Cvib_0556 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase complement(811979..813235) Pelodictyon phaeoclathratiforme BU-1 6461318 YP_002017689.1 CDS gpmA NC_011060.1 813543 814292 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 813543..814292 Pelodictyon phaeoclathratiforme BU-1 6461315 YP_002017690.1 CDS Ppha_0781 NC_011060.1 814402 819003 D PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: plt:Plut_0502 glutamate synthase (ferredoxin); Glutamate synthase (ferredoxin) 814402..819003 Pelodictyon phaeoclathratiforme BU-1 6461313 YP_002017691.1 CDS gltD NC_011060.1 819054 820529 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 819054..820529 Pelodictyon phaeoclathratiforme BU-1 6461310 YP_002017692.1 CDS Ppha_0783 NC_011060.1 820553 820822 D KEGG: plt:Plut_0504 hypothetical protein; hypothetical protein 820553..820822 Pelodictyon phaeoclathratiforme BU-1 6461306 YP_002017693.1 CDS clpX NC_011060.1 820865 822181 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 820865..822181 Pelodictyon phaeoclathratiforme BU-1 6461305 YP_002017694.1 CDS Ppha_0785 NC_011060.1 822661 823449 R PFAM: metallophosphoesterase; KEGG: plt:Plut_0506 Ser/Thr protein phosphatase family protein; metallophosphoesterase complement(822661..823449) Pelodictyon phaeoclathratiforme BU-1 6461300 YP_002017695.1 CDS Ppha_0786 NC_011060.1 823712 824323 D KEGG: plt:Plut_0507 hypothetical protein; hypothetical protein 823712..824323 Pelodictyon phaeoclathratiforme BU-1 6461297 YP_002017696.1 CDS Ppha_0787 NC_011060.1 824320 825258 D PFAM: Domain of unknown function DUF1814; KEGG: plt:Plut_0508 hypothetical protein; hypothetical protein 824320..825258 Pelodictyon phaeoclathratiforme BU-1 6461296 YP_002017697.1 CDS Ppha_0788 NC_011060.1 825804 826283 R KEGG: cph:Cpha266_0655 hypothetical protein; hypothetical protein complement(825804..826283) Pelodictyon phaeoclathratiforme BU-1 6461293 YP_002017698.1 CDS Ppha_0789 NC_011060.1 826624 829011 D PFAM: DNA primase small subunit; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dde:Dde_2493 DEAD/DEAH box helicase-like; type III restriction protein res subunit 826624..829011 Pelodictyon phaeoclathratiforme BU-1 6461289 YP_002017699.1 CDS Ppha_0790 NC_011060.1 829304 829657 D PFAM: protein of unknown function DUF891; KEGG: cph:Cpha266_0649 protein of unknown function DUF891; hypothetical protein 829304..829657 Pelodictyon phaeoclathratiforme BU-1 6461286 YP_002017700.1 CDS Ppha_0791 NC_011060.1 829650 829925 D PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0650 transcriptional regulator, XRE family; XRE family transcriptional regulator 829650..829925 Pelodictyon phaeoclathratiforme BU-1 6461285 YP_002017701.1 CDS Ppha_0792 NC_011060.1 830563 831216 D KEGG: mmw:Mmwyl1_0848 hypothetical protein; hypothetical protein 830563..831216 Pelodictyon phaeoclathratiforme BU-1 6461282 YP_002017702.1 CDS Ppha_0795 NC_011060.1 831880 833706 D KEGG: gbe:GbCGDNIH1_1764 general secretion pathway protein N; hypothetical protein 831880..833706 Pelodictyon phaeoclathratiforme BU-1 6461277 YP_002017703.1 CDS Ppha_0796 NC_011060.1 834150 834605 D hypothetical protein 834150..834605 Pelodictyon phaeoclathratiforme BU-1 6461276 YP_002017704.1 CDS Ppha_0797 NC_011060.1 834663 835916 D hypothetical protein 834663..835916 Pelodictyon phaeoclathratiforme BU-1 6461274 YP_002017705.1 CDS Ppha_0798 NC_011060.1 836388 836633 D PFAM: Flp/Fap pilin component; KEGG: pvi:Cvib_0571 Flp/Fap pilin component; Flp/Fap pilin component 836388..836633 Pelodictyon phaeoclathratiforme BU-1 6461270 YP_002017706.1 CDS Ppha_0799 NC_011060.1 836656 837447 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: pvi:Cvib_0570 SAF domain; Flp pilus assembly protein CpaB 836656..837447 Pelodictyon phaeoclathratiforme BU-1 6461269 YP_002017707.1 CDS Ppha_0800 NC_011060.1 837453 838985 D PFAM: type II and III secretion system protein; transport-associated; KEGG: pvi:Cvib_0569 type II and III secretion system protein; type II and III secretion system protein 837453..838985 Pelodictyon phaeoclathratiforme BU-1 6461267 YP_002017708.1 CDS Ppha_0801 NC_011060.1 838982 839407 D PFAM: TadE family protein; KEGG: pvi:Cvib_0568 TadE family protein; TadE family protein 838982..839407 Pelodictyon phaeoclathratiforme BU-1 6461265 YP_002017709.1 CDS Ppha_0802 NC_011060.1 839404 839931 D KEGG: pvi:Cvib_0567 hypothetical protein; hypothetical protein 839404..839931 Pelodictyon phaeoclathratiforme BU-1 6461262 YP_002017710.1 CDS Ppha_0803 NC_011060.1 839938 841083 D KEGG: plt:Plut_0656 Flp pilus assembly protein ATPase CpaE-like; Flp pilus assembly protein ATPase CpaE-like protein 839938..841083 Pelodictyon phaeoclathratiforme BU-1 6461261 YP_002017711.1 CDS Ppha_0804 NC_011060.1 841059 842480 D PFAM: type II secretion system protein E; KEGG: pvi:Cvib_0565 type II secretion system protein E; type II secretion system protein E 841059..842480 Pelodictyon phaeoclathratiforme BU-1 6461260 YP_002017712.1 CDS Ppha_0805 NC_011060.1 842495 843493 D PFAM: type II secretion system protein; KEGG: pvi:Cvib_0564 type II secretion system protein; type II secretion system protein 842495..843493 Pelodictyon phaeoclathratiforme BU-1 6461259 YP_002017713.1 CDS Ppha_0806 NC_011060.1 843513 844463 D PFAM: type II secretion system protein; KEGG: plt:Plut_0793 TadC protein; type II secretion system protein 843513..844463 Pelodictyon phaeoclathratiforme BU-1 6461258 YP_002017714.1 CDS Ppha_0807 NC_011060.1 844460 845338 D PFAM: peptidase A24A prepilin type IV; KEGG: pvi:Cvib_0562 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 844460..845338 Pelodictyon phaeoclathratiforme BU-1 6461256 YP_002017715.1 CDS Ppha_0808 NC_011060.1 845480 846559 D PFAM: radical SAM protein; KEGG: cte:CT1749 MoaA/NifB/PqqE family protein; radical SAM protein 845480..846559 Pelodictyon phaeoclathratiforme BU-1 6461255 YP_002017716.1 CDS Ppha_0809 NC_011060.1 846588 847382 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT1748 methlytransferase, UbiE/COQ5 family; type 11 methyltransferase 846588..847382 Pelodictyon phaeoclathratiforme BU-1 6461253 YP_002017717.1 CDS Ppha_0810 NC_011060.1 847741 849033 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0468 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit; Flavocytochrome c sulfide dehydrogenase 847741..849033 Pelodictyon phaeoclathratiforme BU-1 6461250 YP_002017718.1 CDS Ppha_0811 NC_011060.1 849251 849598 D KEGG: cch:Cag_1922 sulfur oxidation protein SoxX; sulfur oxidation protein SoxX 849251..849598 Pelodictyon phaeoclathratiforme BU-1 6461245 YP_002017719.1 CDS Ppha_0812 NC_011060.1 849702 850163 D KEGG: cch:Cag_1923 twin-arginine translocation pathway signal; twin-arginine translocation pathway signal 849702..850163 Pelodictyon phaeoclathratiforme BU-1 6461243 YP_002017720.1 CDS Ppha_0813 NC_011060.1 850204 850509 D PFAM: Sulphur oxidation protein SoxZ; KEGG: cch:Cag_1924 sulfur oxidation protein SoxZ; sulfur oxidation protein SoxZ 850204..850509 Pelodictyon phaeoclathratiforme BU-1 6461242 YP_002017721.1 CDS Ppha_0814 NC_011060.1 850535 851392 D KEGG: cch:Cag_1925 sulfur oxidation protein SoxA; sulfur oxidation protein SoxA 850535..851392 Pelodictyon phaeoclathratiforme BU-1 6461236 YP_002017722.1 CDS Ppha_0815 NC_011060.1 851403 851711 D KEGG: cch:Cag_1926 hypothetical protein; hypothetical protein 851403..851711 Pelodictyon phaeoclathratiforme BU-1 6461232 YP_002017723.1 CDS Ppha_0816 NC_011060.1 851811 853571 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: cch:Cag_1927 twin-arginine translocation pathway signal; 5'-nucleotidase 851811..853571 Pelodictyon phaeoclathratiforme BU-1 6461231 YP_002017724.1 CDS Ppha_0817 NC_011060.1 853629 854177 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_1928 thiol:disulfide interchange protein, thioredoxin family; redoxin domain-containing protein 853629..854177 Pelodictyon phaeoclathratiforme BU-1 6461230 YP_002017725.1 CDS Ppha_0818 NC_011060.1 854352 854852 D PFAM: Rubrerythrin; KEGG: cte:CT1327 rubrerythrin; rubrerythrin 854352..854852 Pelodictyon phaeoclathratiforme BU-1 6461228 YP_002017726.1 CDS Ppha_0820 NC_011060.1 855457 855789 D KEGG: cph:Cpha266_2642 hypothetical protein; hypothetical protein 855457..855789 Pelodictyon phaeoclathratiforme BU-1 6461219 YP_002017727.1 CDS Ppha_0821 NC_011060.1 855805 857529 R KEGG: cph:Cpha266_0697 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydC complement(855805..857529) Pelodictyon phaeoclathratiforme BU-1 6461217 YP_002017728.1 CDS Ppha_0822 NC_011060.1 857526 859265 R KEGG: cph:Cpha266_0698 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter permease/ATP-binding protein CydD complement(857526..859265) Pelodictyon phaeoclathratiforme BU-1 6461216 YP_002017729.1 CDS Ppha_0823 NC_011060.1 859558 860532 R hypothetical protein complement(859558..860532) Pelodictyon phaeoclathratiforme BU-1 6461210 YP_002017730.1 CDS Ppha_0824 NC_011060.1 860526 861530 R hypothetical protein complement(860526..861530) Pelodictyon phaeoclathratiforme BU-1 6461205 YP_002017731.1 CDS Ppha_0825 NC_011060.1 861777 862193 R hypothetical protein complement(861777..862193) Pelodictyon phaeoclathratiforme BU-1 6461204 YP_002017732.1 CDS Ppha_0826 NC_011060.1 862190 862438 R KEGG: cph:Cpha266_2641 hypothetical protein; hypothetical protein complement(862190..862438) Pelodictyon phaeoclathratiforme BU-1 6461199 YP_002017733.1 CDS Ppha_0827 NC_011060.1 862663 863862 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(862663..863862) Pelodictyon phaeoclathratiforme BU-1 6461196 YP_002017734.1 CDS Ppha_0828 NC_011060.1 864016 866604 D KEGG: cph:Cpha266_1942 hypothetical protein; hypothetical protein 864016..866604 Pelodictyon phaeoclathratiforme BU-1 6461191 YP_002017735.1 CDS Ppha_0829 NC_011060.1 866634 867506 R PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1299 dihydrolipoamide acetyltransferase; alpha/beta hydrolase fold protein complement(866634..867506) Pelodictyon phaeoclathratiforme BU-1 6461189 YP_002017736.1 CDS Ppha_0830 NC_011060.1 867641 868054 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_0538 hypothetical protein; BadM/Rrf2 family transcriptional regulator 867641..868054 Pelodictyon phaeoclathratiforme BU-1 6461188 YP_002017737.1 CDS Ppha_0831 NC_011060.1 868177 871023 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: plt:Plut_0539 excinuclease ABC, A subunit; excinuclease ABC subunit A 868177..871023 Pelodictyon phaeoclathratiforme BU-1 6461186 YP_002017738.1 CDS Ppha_0832 NC_011060.1 871043 871327 R KEGG: pvi:Cvib_0584 hypothetical protein; hypothetical protein complement(871043..871327) Pelodictyon phaeoclathratiforme BU-1 6461185 YP_002017739.1 CDS groES NC_011060.1 871512 871799 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 871512..871799 Pelodictyon phaeoclathratiforme BU-1 6461184 YP_002017740.1 CDS groEL NC_011060.1 871847 873490 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 871847..873490 Pelodictyon phaeoclathratiforme BU-1 6461183 YP_002017741.1 CDS Ppha_0835 NC_011060.1 873698 873886 D KEGG: cch:Cag_0574 hypothetical protein; hypothetical protein 873698..873886 Pelodictyon phaeoclathratiforme BU-1 6461182 YP_002017742.1 CDS Ppha_0836 NC_011060.1 873871 874185 D PFAM: plasmid stabilization system; KEGG: cch:Cag_0575 hypothetical protein; plasmid stabilization system 873871..874185 Pelodictyon phaeoclathratiforme BU-1 6461180 YP_002017743.1 CDS Ppha_0837 NC_011060.1 874369 874473 R hypothetical protein complement(874369..874473) Pelodictyon phaeoclathratiforme BU-1 6461179 YP_002017744.1 CDS Ppha_0838 NC_011060.1 874740 875516 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cph:Cpha266_1935 ExsB protein; exsB protein 874740..875516 Pelodictyon phaeoclathratiforme BU-1 6461178 YP_002017745.1 CDS Ppha_0839 NC_011060.1 875513 876190 D PFAM: Abortive infection protein; KEGG: cph:Cpha266_1934 abortive infection protein; abortive infection protein 875513..876190 Pelodictyon phaeoclathratiforme BU-1 6461176 YP_002017746.1 CDS trpA NC_011060.1 876222 877025 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 876222..877025 Pelodictyon phaeoclathratiforme BU-1 6461169 YP_002017747.1 CDS Ppha_0841 NC_011060.1 877029 878042 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1932 glycosyl transferase, family 2; family 2 glycosyl transferase 877029..878042 Pelodictyon phaeoclathratiforme BU-1 6461168 YP_002017748.1 CDS Ppha_0842 NC_011060.1 878022 878678 R PFAM: cyclase/dehydrase; KEGG: cte:CT1061 hypothetical protein; cyclase/dehydrase complement(878022..878678) Pelodictyon phaeoclathratiforme BU-1 6461167 YP_002017749.1 CDS Ppha_0843 NC_011060.1 878758 879801 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: cph:Cpha266_1931 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(878758..879801) Pelodictyon phaeoclathratiforme BU-1 6461165 YP_002017750.1 CDS Ppha_0844 NC_011060.1 880160 880678 D KEGG: mfa:Mfla_1836 hypothetical protein; hypothetical protein 880160..880678 Pelodictyon phaeoclathratiforme BU-1 6461164 YP_002017751.1 CDS Ppha_0846 NC_011060.1 880914 882293 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cph:Cpha266_0745 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(880914..882293) Pelodictyon phaeoclathratiforme BU-1 6461160 YP_002017752.1 CDS Ppha_0847 NC_011060.1 882672 883817 D PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0799 glycosyl transferase, group 1; group 1 glycosyl transferase 882672..883817 Pelodictyon phaeoclathratiforme BU-1 6461158 YP_002017753.1 CDS Ppha_0848 NC_011060.1 883839 884894 R KEGG: cch:Cag_1290 cell shape determining protein MreB/Mrl; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein; rod shape-determining protein MreB complement(883839..884894) Pelodictyon phaeoclathratiforme BU-1 6461154 YP_002017754.1 CDS hisD NC_011060.1 885121 886407 D catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 885121..886407 Pelodictyon phaeoclathratiforme BU-1 6461152 YP_002017755.1 CDS Ppha_0850 NC_011060.1 886404 887429 D TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pvi:Cvib_0597 queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 886404..887429 Pelodictyon phaeoclathratiforme BU-1 6461151 YP_002017756.1 CDS Ppha_0851 NC_011060.1 887674 890244 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 887674..890244 Pelodictyon phaeoclathratiforme BU-1 6461147 YP_002017757.1 CDS Ppha_0852 NC_011060.1 890399 890587 R KEGG: rno:685126 hypothetical protein LOC685126; hypothetical protein complement(890399..890587) Pelodictyon phaeoclathratiforme BU-1 6461146 YP_002017758.1 CDS Ppha_0853 NC_011060.1 890984 891877 R PFAM: Auxin Efflux Carrier; KEGG: cph:Cpha266_0806 auxin efflux carrier; auxin efflux carrier family protein complement(890984..891877) Pelodictyon phaeoclathratiforme BU-1 6461144 YP_002017759.1 CDS Ppha_0854 NC_011060.1 892259 893533 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(892259..893533) Pelodictyon phaeoclathratiforme BU-1 6461135 YP_002017760.1 CDS Ppha_0855 NC_011060.1 893734 895245 D PFAM: Peptidase M23; KEGG: cch:Cag_1281 membrane-bound metallopeptidase-like; peptidase M23 893734..895245 Pelodictyon phaeoclathratiforme BU-1 6461127 YP_002017761.1 CDS Ppha_0856 NC_011060.1 895254 895808 D KEGG: plt:Plut_0563 hypothetical protein; hypothetical protein 895254..895808 Pelodictyon phaeoclathratiforme BU-1 6461126 YP_002017762.1 CDS Ppha_0857 NC_011060.1 895819 896652 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 895819..896652 Pelodictyon phaeoclathratiforme BU-1 6461125 YP_002017763.1 CDS Ppha_0858 NC_011060.1 896757 898352 R KEGG: plt:Plut_0565 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase complement(896757..898352) Pelodictyon phaeoclathratiforme BU-1 6461120 YP_002017764.1 CDS Ppha_0859 NC_011060.1 898452 899072 R PFAM: hypothetical protein; KEGG: cph:Cpha266_0812 DedA family protein; hypothetical protein complement(898452..899072) Pelodictyon phaeoclathratiforme BU-1 6461114 YP_002017765.1 CDS Ppha_0860 NC_011060.1 899251 899796 R PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase complement(899251..899796) Pelodictyon phaeoclathratiforme BU-1 6461113 YP_002017766.1 CDS Ppha_0861 NC_011060.1 899879 901096 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(899879..901096) Pelodictyon phaeoclathratiforme BU-1 6461112 YP_002017767.1 CDS smpB NC_011060.1 901123 901596 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(901123..901596) Pelodictyon phaeoclathratiforme BU-1 6461110 YP_002017768.1 CDS Ppha_0863 NC_011060.1 901605 903092 R PFAM: FAD linked oxidase domain protein; KEGG: pvi:Cvib_1206 D-lactate dehydrogenase (cytochrome); D-lactate dehydrogenase complement(901605..903092) Pelodictyon phaeoclathratiforme BU-1 6461109 YP_002017769.1 CDS Ppha_0864 NC_011060.1 903089 905014 R KEGG: cph:Cpha266_0817 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 complement(903089..905014) Pelodictyon phaeoclathratiforme BU-1 6461108 YP_002017770.1 CDS Ppha_0865 NC_011060.1 905018 905509 R KEGG: plt:Plut_0572 hypothetical protein; hypothetical protein complement(905018..905509) Pelodictyon phaeoclathratiforme BU-1 6461107 YP_002017771.1 CDS Ppha_0866 NC_011060.1 905528 906370 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(905528..906370) Pelodictyon phaeoclathratiforme BU-1 6461103 YP_002017772.1 CDS Ppha_0867 NC_011060.1 906451 906840 D PFAM: chaperonin Cpn10; KEGG: cch:Cag_1167 chaperonin, 10 kDa; chaperonin Cpn10 906451..906840 Pelodictyon phaeoclathratiforme BU-1 6461102 YP_002017773.1 CDS Ppha_0868 NC_011060.1 906887 907861 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 906887..907861 Pelodictyon phaeoclathratiforme BU-1 6461100 YP_002017774.1 CDS Ppha_0869 NC_011060.1 907957 908670 D KEGG: cph:Cpha266_0822 hypothetical protein; hypothetical protein 907957..908670 Pelodictyon phaeoclathratiforme BU-1 6461099 YP_002017775.1 CDS Ppha_0870 NC_011060.1 908702 909790 D PFAM: pentapeptide repeat protein; KEGG: cte:CT0572 pentapeptide repeat family protein; pentapeptide repeat-containing protein 908702..909790 Pelodictyon phaeoclathratiforme BU-1 6461091 YP_002017776.1 CDS Ppha_0871 NC_011060.1 909798 910793 D PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: bcz:BCZK2940 3-oxoacyl-(acyl carrier protein) synthase III; Beta-ketoacyl-acyl-carrier-protein synthase I 909798..910793 Pelodictyon phaeoclathratiforme BU-1 6461090 YP_002017777.1 CDS Ppha_0872 NC_011060.1 910989 912746 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; histidine kinase 910989..912746 Pelodictyon phaeoclathratiforme BU-1 6461088 YP_002017778.1 CDS Ppha_0873 NC_011060.1 912821 913087 D PFAM: Tail Collar domain protein; KEGG: ana:alr4706 unknown protein; Tail Collar domain-containing protein 912821..913087 Pelodictyon phaeoclathratiforme BU-1 6461087 YP_002017779.1 CDS Ppha_0874 NC_011060.1 913094 913201 D hypothetical protein 913094..913201 Pelodictyon phaeoclathratiforme BU-1 6461086 YP_002017780.1 CDS Ppha_0875 NC_011060.1 913198 913629 D PFAM: glycoside hydrolase family 24; KEGG: cch:Cag_0702 probable phage-related lysozyme; lysozyme 913198..913629 Pelodictyon phaeoclathratiforme BU-1 6461085 YP_002017781.1 CDS Ppha_0876 NC_011060.1 913841 917266 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 913841..917266 Pelodictyon phaeoclathratiforme BU-1 6461078 YP_002017782.1 CDS Ppha_0877 NC_011060.1 917367 917999 R PFAM: radical SAM protein; KEGG: ppd:Ppro_1702 hydrolase, TatD family; radical SAM protein complement(917367..917999) Pelodictyon phaeoclathratiforme BU-1 6461076 YP_002017783.1 CDS Ppha_0878 NC_011060.1 918448 919905 D PFAM: homospermidine synthase; KEGG: mbn:Mboo_1047 homospermidine synthase; homospermidine synthase 918448..919905 Pelodictyon phaeoclathratiforme BU-1 6461075 YP_002017784.1 CDS Ppha_0879 NC_011060.1 919921 921060 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: mbn:Mboo_1046 Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 919921..921060 Pelodictyon phaeoclathratiforme BU-1 6461074 YP_002017785.1 CDS Ppha_0880 NC_011060.1 921244 921789 R PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase complement(921244..921789) Pelodictyon phaeoclathratiforme BU-1 6461073 YP_002017786.1 CDS Ppha_0881 NC_011060.1 922617 923300 D PFAM: protein of unknown function DUF134; KEGG: cph:Cpha266_1458 protein of unknown function DUF134; hypothetical protein 922617..923300 Pelodictyon phaeoclathratiforme BU-1 6461072 YP_002017787.1 CDS Ppha_0882 NC_011060.1 923680 924192 D KEGG: gur:Gura_2736 hypothetical protein; hypothetical protein 923680..924192 Pelodictyon phaeoclathratiforme BU-1 6461070 YP_002017788.1 CDS Ppha_0883 NC_011060.1 924189 924524 D KEGG: gvi:gll2960 hypothetical protein; hypothetical protein 924189..924524 Pelodictyon phaeoclathratiforme BU-1 6461069 YP_002017789.1 CDS Ppha_0884 NC_011060.1 924636 924848 D KEGG: mhu:Mhun_0632 hypothetical protein; hypothetical protein 924636..924848 Pelodictyon phaeoclathratiforme BU-1 6461057 YP_002017790.1 CDS Ppha_0885 NC_011060.1 924916 926628 R KEGG: amt:Amet_0623 transposase, IS4; hypothetical protein complement(924916..926628) Pelodictyon phaeoclathratiforme BU-1 6461053 YP_002017791.1 CDS Ppha_0886 NC_011060.1 926916 927125 D KEGG: cph:Cpha266_1440 hypothetical protein; hypothetical protein 926916..927125 Pelodictyon phaeoclathratiforme BU-1 6461049 YP_002017792.1 CDS Ppha_0888 NC_011060.1 927338 927814 D KEGG: cch:Cag_0704 hypothetical protein; hypothetical protein 927338..927814 Pelodictyon phaeoclathratiforme BU-1 6461045 YP_002017793.1 CDS Ppha_0889 NC_011060.1 928029 929420 R PFAM: AAA-4 family protein; KEGG: gur:Gura_2922 transcriptional regulator; transcriptional regulator complement(928029..929420) Pelodictyon phaeoclathratiforme BU-1 6461044 YP_002017794.1 CDS Ppha_0890 NC_011060.1 929417 930073 R KEGG: gur:Gura_2921 hypothetical protein; hypothetical protein complement(929417..930073) Pelodictyon phaeoclathratiforme BU-1 6461043 YP_002017795.1 CDS Ppha_0891 NC_011060.1 930275 931450 R KEGG: cph:Cpha266_1443 hypothetical protein; hypothetical protein complement(930275..931450) Pelodictyon phaeoclathratiforme BU-1 6461038 YP_002017796.1 CDS Ppha_0892 NC_011060.1 931447 934812 R KEGG: cch:Cag_0843 hypothetical protein; hypothetical protein complement(931447..934812) Pelodictyon phaeoclathratiforme BU-1 6461034 YP_002017797.1 CDS Ppha_0893 NC_011060.1 935060 935413 R hypothetical protein complement(935060..935413) Pelodictyon phaeoclathratiforme BU-1 6461031 YP_002017798.1 CDS Ppha_0894 NC_011060.1 935930 936373 R hypothetical protein complement(935930..936373) Pelodictyon phaeoclathratiforme BU-1 6461029 YP_002017799.1 CDS Ppha_0895 NC_011060.1 936380 936544 R KEGG: cch:Cag_0843 hypothetical protein; hypothetical protein complement(936380..936544) Pelodictyon phaeoclathratiforme BU-1 6461027 YP_002017800.1 CDS Ppha_0896 NC_011060.1 936707 936985 R KEGG: btr:Btr_1076 hypothetical protein; hypothetical protein complement(936707..936985) Pelodictyon phaeoclathratiforme BU-1 6461025 YP_002017801.1 CDS Ppha_0897 NC_011060.1 936985 937212 R KEGG: cch:Cag_0841 hypothetical protein; hypothetical protein complement(936985..937212) Pelodictyon phaeoclathratiforme BU-1 6461023 YP_002017802.1 CDS Ppha_0898 NC_011060.1 937512 937802 R TIGRFAM: addiction module antidote protein; KEGG: mar:MAE_47260 hypothetical protein; transcriptional regulator complement(937512..937802) Pelodictyon phaeoclathratiforme BU-1 6461021 YP_002017803.1 CDS Ppha_0899 NC_011060.1 937799 938107 R TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891; KEGG: gme:Gmet_2533 protein of unknown function DUF891; addiction module killer protein complement(937799..938107) Pelodictyon phaeoclathratiforme BU-1 6461016 YP_002017804.1 CDS Ppha_0900 NC_011060.1 938247 938879 R KEGG: cch:Cag_0839 hypothetical protein; hypothetical protein complement(938247..938879) Pelodictyon phaeoclathratiforme BU-1 6461015 YP_002017805.1 CDS Ppha_0901 NC_011060.1 938879 940330 R KEGG: cch:Cag_0838 hypothetical protein; hypothetical protein complement(938879..940330) Pelodictyon phaeoclathratiforme BU-1 6461013 YP_002017806.1 CDS Ppha_0902 NC_011060.1 940745 941002 D KEGG: rfe:RF_0889 hypothetical protein; hypothetical protein 940745..941002 Pelodictyon phaeoclathratiforme BU-1 6461009 YP_002017807.1 CDS Ppha_0903 NC_011060.1 941009 941269 D KEGG: mar:MAE_20750 hypothetical protein; hypothetical protein 941009..941269 Pelodictyon phaeoclathratiforme BU-1 6461004 YP_002017808.1 CDS Ppha_0904 NC_011060.1 941357 942643 R KEGG: cph:Cpha266_2115 ATPase; ATPase complement(941357..942643) Pelodictyon phaeoclathratiforme BU-1 6461003 YP_002017809.1 CDS Ppha_0905 NC_011060.1 942886 943113 D KEGG: rpe:RPE_0295 hypothetical protein; hypothetical protein 942886..943113 Pelodictyon phaeoclathratiforme BU-1 6461002 YP_002017810.1 CDS Ppha_0906 NC_011060.1 943097 943357 D KEGG: syn:ssl3692 hypothetical protein; hypothetical protein 943097..943357 Pelodictyon phaeoclathratiforme BU-1 6461000 YP_002017811.1 CDS Ppha_0907 NC_011060.1 943482 944189 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_1198 cell division ATP-binding protein FtsE; ABC transporter-like protein complement(943482..944189) Pelodictyon phaeoclathratiforme BU-1 6460995 YP_002017812.1 CDS Ppha_0908 NC_011060.1 944186 945187 R KEGG: cph:Cpha266_1780 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(944186..945187) Pelodictyon phaeoclathratiforme BU-1 6460994 YP_002017813.1 CDS Ppha_0909 NC_011060.1 945191 945652 R KEGG: pvi:Cvib_1196 hypothetical protein; hypothetical protein complement(945191..945652) Pelodictyon phaeoclathratiforme BU-1 6460993 YP_002017814.1 CDS Ppha_0910 NC_011060.1 945823 946815 R PFAM: Polysulphide reductase NrfD; KEGG: cch:Cag_0618 formate-dependent nitrite reductase membrane component-like; polysulfide reductase NrfD complement(945823..946815) Pelodictyon phaeoclathratiforme BU-1 6460989 YP_002017815.1 CDS Ppha_0911 NC_011060.1 946818 947384 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0619 NrfC protein; 4Fe-4S ferredoxin complement(946818..947384) Pelodictyon phaeoclathratiforme BU-1 6460987 YP_002017816.1 CDS Ppha_0912 NC_011060.1 947388 949607 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cch:Cag_0620 twin-arginine translocation pathway signal; molybdopterin oxidoreductase complement(947388..949607) Pelodictyon phaeoclathratiforme BU-1 6460986 YP_002017817.1 CDS Ppha_0913 NC_011060.1 950522 950824 D KEGG: cph:Cpha266_1712 N-6 DNA methylase; N-6 DNA methylase 950522..950824 Pelodictyon phaeoclathratiforme BU-1 6460984 YP_002017818.1 CDS Ppha_0914 NC_011060.1 950901 951221 D PFAM: protein of unknown function DUF497; KEGG: cte:CT0821 hypothetical protein; hypothetical protein 950901..951221 Pelodictyon phaeoclathratiforme BU-1 6460983 YP_002017819.1 CDS Ppha_0915 NC_011060.1 951181 951453 D KEGG: cph:Cpha266_2182 hypothetical protein; hypothetical protein 951181..951453 Pelodictyon phaeoclathratiforme BU-1 6460981 YP_002017820.1 CDS dinD NC_011060.1 951661 952386 D KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D; DNA-damage-inducible protein D 951661..952386 Pelodictyon phaeoclathratiforme BU-1 6460980 YP_002017821.1 CDS Ppha_0917 NC_011060.1 952727 953239 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cph:Cpha266_1068 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 952727..953239 Pelodictyon phaeoclathratiforme BU-1 6460973 YP_002017822.1 CDS Ppha_0918 NC_011060.1 953309 954127 D PFAM: acid phosphatase (Class B); KEGG: cph:Cpha266_1069 acid phosphatase (class B); acid phosphatase (Class B) 953309..954127 Pelodictyon phaeoclathratiforme BU-1 6460968 YP_002017823.1 CDS Ppha_0919 NC_011060.1 954348 954686 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: cph:Cpha266_2430 alkylphosphonate utilization operon protein PhnA; alkylphosphonate utilization operon protein PhnA 954348..954686 Pelodictyon phaeoclathratiforme BU-1 6460966 YP_002017824.1 CDS Ppha_0920 NC_011060.1 954707 954982 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(954707..954982) Pelodictyon phaeoclathratiforme BU-1 6460965 YP_002017825.1 CDS Ppha_0921 NC_011060.1 955140 956093 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: plt:Plut_1551 cysteine synthase K/M/A; cysteine synthase A complement(955140..956093) Pelodictyon phaeoclathratiforme BU-1 6460953 YP_002017826.1 CDS Ppha_0922 NC_011060.1 956481 957770 R PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: cph:Cpha266_1778 3-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase complement(956481..957770) Pelodictyon phaeoclathratiforme BU-1 6460947 YP_002017827.1 CDS Ppha_0923 NC_011060.1 958001 958780 D KEGG: cph:Cpha266_1775 hypothetical protein; hypothetical protein 958001..958780 Pelodictyon phaeoclathratiforme BU-1 6460945 YP_002017828.1 CDS Ppha_0924 NC_011060.1 959112 960911 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1774 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 959112..960911 Pelodictyon phaeoclathratiforme BU-1 6460944 YP_002017829.1 CDS Ppha_0925 NC_011060.1 961009 962403 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: plt:Plut_0588 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 961009..962403 Pelodictyon phaeoclathratiforme BU-1 6460942 YP_002017830.1 CDS Ppha_0926 NC_011060.1 962585 963064 D KEGG: cph:Cpha266_1771 hypothetical protein; hypothetical protein 962585..963064 Pelodictyon phaeoclathratiforme BU-1 6460941 YP_002017831.1 CDS Ppha_0927 NC_011060.1 963077 963991 R TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cph:Cpha266_1769 tyrosine recombinase XerD; tyrosine recombinase XerD complement(963077..963991) Pelodictyon phaeoclathratiforme BU-1 6460936 YP_002017832.1 CDS Ppha_0928 NC_011060.1 963997 965334 R TIGRFAM: sun protein; transcription antitermination factor NusB; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cph:Cpha266_1768 sun protein; sun protein complement(963997..965334) Pelodictyon phaeoclathratiforme BU-1 6460935 YP_002017833.1 CDS Ppha_0929 NC_011060.1 965675 966967 D KEGG: cte:CT0604 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 965675..966967 Pelodictyon phaeoclathratiforme BU-1 6460932 YP_002017834.1 CDS Ppha_0930 NC_011060.1 966973 968049 D KEGG: cph:Cpha266_1766 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 966973..968049 Pelodictyon phaeoclathratiforme BU-1 6460924 YP_002017835.1 CDS Ppha_0931 NC_011060.1 968034 969329 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(968034..969329) Pelodictyon phaeoclathratiforme BU-1 6460923 YP_002017836.1 CDS Ppha_0932 NC_011060.1 969348 969806 R PFAM: GatB/Yqey domain protein; KEGG: cph:Cpha266_1764 GatB/YqeY domain protein; GatB/Yqey domain-containing protein complement(969348..969806) Pelodictyon phaeoclathratiforme BU-1 6460920 YP_002017837.1 CDS Ppha_0933 NC_011060.1 969896 970627 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1763 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(969896..970627) Pelodictyon phaeoclathratiforme BU-1 6460917 YP_002017838.1 CDS Ppha_0934 NC_011060.1 970841 971095 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cph:Cpha266_1762 cold-shock DNA-binding protein family; cold-shock DNA-binding domain-containing protein 970841..971095 Pelodictyon phaeoclathratiforme BU-1 6460916 YP_002017839.1 CDS radC NC_011060.1 971107 971775 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(971107..971775) Pelodictyon phaeoclathratiforme BU-1 6460914 YP_002017840.1 CDS Ppha_0936 NC_011060.1 971913 972344 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cph:Cpha266_1847 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; hypothetical protein complement(971913..972344) Pelodictyon phaeoclathratiforme BU-1 6460912 YP_002017841.1 CDS Ppha_0937 NC_011060.1 972566 972682 D hypothetical protein 972566..972682 Pelodictyon phaeoclathratiforme BU-1 6460905 YP_002017842.1 CDS Ppha_0938 NC_011060.1 972637 972984 R KEGG: cph:Cpha266_1406 hypothetical protein; hypothetical protein complement(972637..972984) Pelodictyon phaeoclathratiforme BU-1 6460904 YP_002017843.1 CDS Ppha_0939 NC_011060.1 973224 974909 R PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein ShlB-type; KEGG: pfl:PFL_1466 hemolysin activator protein, HlyB family; Polypeptide-transport-associated domain-containing protein ShlB-type complement(973224..974909) Pelodictyon phaeoclathratiforme BU-1 6460903 YP_002017844.1 CDS Ppha_0940 NC_011060.1 974995 980070 R TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: cch:Cag_1512 filamentous haemagglutinin-like; filamentous hemagglutinin family outer membrane protein complement(974995..980070) Pelodictyon phaeoclathratiforme BU-1 6460902 YP_002017845.1 CDS Ppha_0941 NC_011060.1 980363 981181 D KEGG: cph:Cpha266_1806 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase 980363..981181 Pelodictyon phaeoclathratiforme BU-1 6460900 YP_002017846.1 CDS Ppha_0942 NC_011060.1 981172 982365 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(981172..982365) Pelodictyon phaeoclathratiforme BU-1 6460899 YP_002017847.1 CDS Ppha_0943 NC_011060.1 982448 983434 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(982448..983434) Pelodictyon phaeoclathratiforme BU-1 6460897 YP_002017848.1 CDS Ppha_0944 NC_011060.1 983546 984670 R KEGG: plt:Plut_1434 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta complement(983546..984670) Pelodictyon phaeoclathratiforme BU-1 6460896 YP_002017849.1 CDS Ppha_0945 NC_011060.1 984690 985109 R PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: plt:Plut_1433 biotin carboxyl carrier protein; biotin/lipoyl attachment domain-containing protein complement(984690..985109) Pelodictyon phaeoclathratiforme BU-1 6460894 YP_002017850.1 CDS Ppha_0946 NC_011060.1 985106 985486 R KEGG: pvi:Cvib_1249 hypothetical protein; hypothetical protein complement(985106..985486) Pelodictyon phaeoclathratiforme BU-1 6460880 YP_002017851.1 CDS Ppha_0947 NC_011060.1 985500 987041 R PFAM: carboxyl transferase; KEGG: plt:Plut_1431 propionyl-CoA carboxylase beta chain; carboxyl transferase complement(985500..987041) Pelodictyon phaeoclathratiforme BU-1 6460879 YP_002017852.1 CDS Ppha_0948 NC_011060.1 987191 987961 D KEGG: pvi:Cvib_1247 histidinol-phosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; histidinol-phosphate phosphatase 987191..987961 Pelodictyon phaeoclathratiforme BU-1 6460877 YP_002017853.1 CDS Ppha_0949 NC_011060.1 987977 988720 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: cch:Cag_1514 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase complement(987977..988720) Pelodictyon phaeoclathratiforme BU-1 6460868 YP_002017854.1 CDS hemC NC_011060.1 988720 989661 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(988720..989661) Pelodictyon phaeoclathratiforme BU-1 6460865 YP_002017855.1 CDS hemA NC_011060.1 989681 990958 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(989681..990958) Pelodictyon phaeoclathratiforme BU-1 6460864 YP_002017856.1 CDS Ppha_0952 NC_011060.1 991078 991923 R PFAM: cytochrome c assembly protein; KEGG: plt:Plut_1425 HemX protein; cytochrome c assembly protein complement(991078..991923) Pelodictyon phaeoclathratiforme BU-1 6460862 YP_002017857.1 CDS Ppha_0953 NC_011060.1 992098 993924 D TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cph:Cpha266_1793 GTP-binding protein TypA; GTP-binding protein TypA 992098..993924 Pelodictyon phaeoclathratiforme BU-1 6460861 YP_002017858.1 CDS Ppha_0954 NC_011060.1 994102 995691 D PFAM: ferredoxin-dependent glutamate synthase; Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1570 glutamate synthase (NADPH) GltB2 subunit; Glutamate synthase (NADPH) 994102..995691 Pelodictyon phaeoclathratiforme BU-1 6460856 YP_002017859.1 CDS Ppha_0955 NC_011060.1 995753 996253 D PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1571 rubrerythrin; rubrerythrin 995753..996253 Pelodictyon phaeoclathratiforme BU-1 6461019 YP_002017860.1 CDS Ppha_0956 NC_011060.1 996470 997453 R PFAM: Helix-turn-helix type 11 domain protein; KEGG: pvi:Cvib_0086 helix-turn-helix, type 11 domain protein; helix-turn-helix type 11 domain-containing protein complement(996470..997453) Pelodictyon phaeoclathratiforme BU-1 6460956 YP_002017861.1 CDS Ppha_0957 NC_011060.1 997624 998478 D PFAM: ADP-ribosylation/Crystallin J1; KEGG: plt:Plut_0825 ribosylglycohydrolase; ADP-ribosylation/Crystallin J1 997624..998478 Pelodictyon phaeoclathratiforme BU-1 6461883 YP_002017862.1 CDS Ppha_0958 NC_011060.1 998640 999371 R KEGG: nme:NMB0252 hypothetical protein; hypothetical protein complement(998640..999371) Pelodictyon phaeoclathratiforme BU-1 6462114 YP_002017863.1 CDS Ppha_0959 NC_011060.1 999468 999935 R KEGG: azo:azo3723 hypothetical protein; hypothetical protein complement(999468..999935) Pelodictyon phaeoclathratiforme BU-1 6462473 YP_002017864.1 CDS Ppha_0960 NC_011060.1 999981 1000124 R hypothetical protein complement(999981..1000124) Pelodictyon phaeoclathratiforme BU-1 6461416 YP_002017865.1 CDS Ppha_0961 NC_011060.1 1000124 1000705 R KEGG: dar:Daro_1651 hypothetical protein; hypothetical protein complement(1000124..1000705) Pelodictyon phaeoclathratiforme BU-1 6462338 YP_002017866.1 CDS Ppha_0962 NC_011060.1 1000860 1001543 R hypothetical protein complement(1000860..1001543) Pelodictyon phaeoclathratiforme BU-1 6462613 YP_002017867.1 CDS Ppha_0963 NC_011060.1 1002435 1003676 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1002435..1003676 Pelodictyon phaeoclathratiforme BU-1 6460962 YP_002017868.1 CDS Ppha_0965 NC_011060.1 1004312 1004518 D KEGG: cch:Cag_1342 hypothetical protein; hypothetical protein 1004312..1004518 Pelodictyon phaeoclathratiforme BU-1 6462550 YP_002017869.1 CDS Ppha_0966 NC_011060.1 1004726 1005946 R PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pvi:Cvib_0620 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(1004726..1005946) Pelodictyon phaeoclathratiforme BU-1 6460974 YP_002017870.1 CDS Ppha_0967 NC_011060.1 1006507 1008033 D KEGG: pvi:Cvib_0081 hypothetical protein; hypothetical protein 1006507..1008033 Pelodictyon phaeoclathratiforme BU-1 6462307 YP_002017871.1 CDS Ppha_0968 NC_011060.1 1008074 1008589 D PFAM: Protein of unknown function DUF1790; KEGG: pvi:Cvib_0068 hypothetical protein; hypothetical protein 1008074..1008589 Pelodictyon phaeoclathratiforme BU-1 6461082 YP_002017872.1 CDS Ppha_0969 NC_011060.1 1008610 1009455 R KEGG: cch:Cag_0294 hypothetical protein; hypothetical protein complement(1008610..1009455) Pelodictyon phaeoclathratiforme BU-1 6461959 YP_002017873.1 CDS Ppha_0970 NC_011060.1 1009452 1010195 R PFAM: filamentation induced by cAMP protein Fic; KEGG: dvu:DVU2042 Fic family protein; filamentation induced by cAMP protein fic complement(1009452..1010195) Pelodictyon phaeoclathratiforme BU-1 6461524 YP_002017874.1 CDS Ppha_0971 NC_011060.1 1010207 1011040 R KEGG: nwi:Nwi_3122 hypothetical protein; hypothetical protein complement(1010207..1011040) Pelodictyon phaeoclathratiforme BU-1 6462474 YP_002017875.1 CDS Ppha_0972 NC_011060.1 1011022 1011285 R hypothetical protein complement(1011022..1011285) Pelodictyon phaeoclathratiforme BU-1 6461884 YP_002017876.1 CDS dinD NC_011060.1 1011272 1012360 R KEGG: tdn:Tmden_0943 DNA-damage-inducible protein D; DNA-damage-inducible protein D complement(1011272..1012360) Pelodictyon phaeoclathratiforme BU-1 6461215 YP_002017877.1 CDS Ppha_0975 NC_011060.1 1012860 1013147 R SMART: helix-turn-helix domain protein; KEGG: plt:Plut_1042 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1012860..1013147) Pelodictyon phaeoclathratiforme BU-1 6461478 YP_002017878.1 CDS Ppha_0976 NC_011060.1 1013576 1013791 D hypothetical protein 1013576..1013791 Pelodictyon phaeoclathratiforme BU-1 6462475 YP_002017879.1 CDS Ppha_0977 NC_011060.1 1013831 1014088 D KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein 1013831..1014088 Pelodictyon phaeoclathratiforme BU-1 6461958 YP_002017880.1 CDS Ppha_0979 NC_011060.1 1014398 1015510 R KEGG: cch:Cag_0400 chlorophyllide reductase iron protein subunit X; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Sigma-70 region 4 type 2; chlorophyllide reductase iron protein subunit X complement(1014398..1015510) Pelodictyon phaeoclathratiforme BU-1 6461148 YP_002017881.1 CDS Ppha_0980 NC_011060.1 1015521 1016525 R TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cch:Cag_0401 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide; chlorophyll synthesis pathway protein BchC complement(1015521..1016525) Pelodictyon phaeoclathratiforme BU-1 6460979 YP_002017882.1 CDS Ppha_0981 NC_011060.1 1016541 1017014 R PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cch:Cag_0402 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD complement(1016541..1017014) Pelodictyon phaeoclathratiforme BU-1 6461809 YP_002017883.1 CDS Ppha_0982 NC_011060.1 1017124 1018827 R PFAM: extracellular solute-binding protein family 5; KEGG: cph:Cpha266_1789 extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein complement(1017124..1018827) Pelodictyon phaeoclathratiforme BU-1 6462022 YP_002017884.1 CDS Ppha_0983 NC_011060.1 1019218 1020135 D PFAM: peptidase C1A papain; KEGG: mba:Mbar_A0734 cysteine protease (papain C1 family); peptidase C1A papain 1019218..1020135 Pelodictyon phaeoclathratiforme BU-1 6461566 YP_002017885.1 CDS Ppha_0984 NC_011060.1 1020305 1021477 D PFAM: creatinase; peptidase M24; KEGG: cph:Cpha266_2518 peptidase M24; peptidase M24 1020305..1021477 Pelodictyon phaeoclathratiforme BU-1 6462295 YP_002017886.1 CDS Ppha_0985 NC_011060.1 1021547 1021804 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: pca:Pcar_1787 hypothetical protein; RelE/StbE family addiction module toxin 1021547..1021804 Pelodictyon phaeoclathratiforme BU-1 6462576 YP_002017887.1 CDS Ppha_0986 NC_011060.1 1021801 1022193 D PFAM: helix-turn-helix domain protein; KEGG: pca:Pcar_1786 helix-turn-helix transcriptional regulator; XRE family transcriptional regulator 1021801..1022193 Pelodictyon phaeoclathratiforme BU-1 6461454 YP_002017888.1 CDS Ppha_0987 NC_011060.1 1022229 1022747 D PFAM: DinB family protein; KEGG: cte:CT1840 hypothetical protein; DinB family protein 1022229..1022747 Pelodictyon phaeoclathratiforme BU-1 6462060 YP_002017889.1 CDS Ppha_0988 NC_011060.1 1022787 1023242 D KEGG: pna:Pnap_4866 hypothetical protein; hypothetical protein 1022787..1023242 Pelodictyon phaeoclathratiforme BU-1 6461493 YP_002017890.1 CDS Ppha_0989 NC_011060.1 1023239 1025455 D KEGG: pvi:Cvib_1272 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding class 1; AAA ATPase; helicase, RecD/TraA family 1023239..1025455 Pelodictyon phaeoclathratiforme BU-1 6462014 YP_002017891.1 CDS Ppha_0990 NC_011060.1 1025543 1026901 D PFAM: PUCC protein; KEGG: cte:CT1441 PucC protein; PUCC protein 1025543..1026901 Pelodictyon phaeoclathratiforme BU-1 6461446 YP_002017892.1 CDS Ppha_0991 NC_011060.1 1026924 1027859 D PFAM: radical SAM protein; KEGG: cch:Cag_0688 MoaA/NifB/PqqE family protein; radical SAM protein 1026924..1027859 Pelodictyon phaeoclathratiforme BU-1 6462489 YP_002017893.1 CDS Ppha_0992 NC_011060.1 1027856 1028740 R KEGG: cch:Cag_1146 hypothetical protein; hypothetical protein complement(1027856..1028740) Pelodictyon phaeoclathratiforme BU-1 6461618 YP_002017894.1 CDS Ppha_0993 NC_011060.1 1028737 1030239 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cch:Cag_0439 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1028737..1030239) Pelodictyon phaeoclathratiforme BU-1 6462152 YP_002017895.1 CDS Ppha_0994 NC_011060.1 1030236 1030919 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cph:Cpha266_1205 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1030236..1030919) Pelodictyon phaeoclathratiforme BU-1 6461494 YP_002017896.1 CDS Ppha_0995 NC_011060.1 1030938 1031486 R KEGG: cch:Cag_0441 hypothetical protein; hypothetical protein complement(1030938..1031486) Pelodictyon phaeoclathratiforme BU-1 6461311 YP_002017897.1 CDS Ppha_0996 NC_011060.1 1031760 1032644 D PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344; hypothetical protein 1031760..1032644 Pelodictyon phaeoclathratiforme BU-1 6461007 YP_002017898.1 CDS Ppha_0997 NC_011060.1 1032707 1033087 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: cch:Cag_0277 Sel1-like repeat; Sel1 domain-containing protein repeat-containing protein complement(1032707..1033087) Pelodictyon phaeoclathratiforme BU-1 6462034 YP_002017899.1 CDS Ppha_0998 NC_011060.1 1033109 1033864 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1033109..1033864) Pelodictyon phaeoclathratiforme BU-1 6462250 YP_002017900.1 CDS Ppha_0999 NC_011060.1 1033965 1034984 R PFAM: acyltransferase 3; KEGG: plt:Plut_1385 hypothetical protein; acyltransferase 3 complement(1033965..1034984) Pelodictyon phaeoclathratiforme BU-1 6461798 YP_002017901.1 CDS Ppha_1000 NC_011060.1 1034981 1035505 R KEGG: plt:Plut_1384 hypothetical protein; hypothetical protein complement(1034981..1035505) Pelodictyon phaeoclathratiforme BU-1 6461559 YP_002017902.1 CDS Ppha_1001 NC_011060.1 1035586 1036821 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1812 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1035586..1036821) Pelodictyon phaeoclathratiforme BU-1 6462480 YP_002017903.1 CDS Ppha_1002 NC_011060.1 1036926 1038023 R PFAM: radical SAM protein; KEGG: cph:Cpha266_1814 radical SAM protein; radical SAM protein complement(1036926..1038023) Pelodictyon phaeoclathratiforme BU-1 6462087 YP_002017904.1 CDS Ppha_1003 NC_011060.1 1038061 1038441 R KEGG: cph:Cpha266_1815 hypothetical protein; hypothetical protein complement(1038061..1038441) Pelodictyon phaeoclathratiforme BU-1 6462505 YP_002017905.1 CDS Ppha_1004 NC_011060.1 1038497 1039909 R KEGG: cph:Cpha266_1816 hypothetical protein; hypothetical protein complement(1038497..1039909) Pelodictyon phaeoclathratiforme BU-1 6461761 YP_002017906.1 CDS Ppha_1005 NC_011060.1 1039921 1040412 R KEGG: cph:Cpha266_1817 serine O-acetyltransferase; serine O-acetyltransferase complement(1039921..1040412) Pelodictyon phaeoclathratiforme BU-1 6461542 YP_002017907.1 CDS Ppha_1006 NC_011060.1 1040412 1041560 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1818 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1040412..1041560) Pelodictyon phaeoclathratiforme BU-1 6461037 YP_002017908.1 CDS Ppha_1007 NC_011060.1 1041586 1043838 R KEGG: cph:Cpha266_1819 uncharacterized protein involved in exopolysaccharide biosynthesis-like; hypothetical protein complement(1041586..1043838) Pelodictyon phaeoclathratiforme BU-1 6461751 YP_002017909.1 CDS Ppha_1008 NC_011060.1 1043841 1045592 R PFAM: polysaccharide biosynthesis protein; KEGG: cph:Cpha266_0889 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(1043841..1045592) Pelodictyon phaeoclathratiforme BU-1 6461122 YP_002017910.1 CDS Ppha_1009 NC_011060.1 1045692 1046609 R PFAM: glycosyl transferase family 8; KEGG: cph:Cpha266_1821 glycosyl transferase, family 8; glycosyl transferase family protein complement(1045692..1046609) Pelodictyon phaeoclathratiforme BU-1 6462282 YP_002017911.1 CDS Ppha_1010 NC_011060.1 1046625 1047800 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_1822 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1046625..1047800) Pelodictyon phaeoclathratiforme BU-1 6462110 YP_002017912.1 CDS Ppha_1011 NC_011060.1 1047874 1049040 R PFAM: polysaccharide export protein; KEGG: cph:Cpha266_1823 polysaccharide export protein; polysaccharide export protein complement(1047874..1049040) Pelodictyon phaeoclathratiforme BU-1 6462654 YP_002017913.1 CDS Ppha_1012 NC_011060.1 1049050 1049574 R PFAM: transferase hexapeptide repeat containing protein; KEGG: cph:Cpha266_1824 serine O-acetyltransferase; transferase hexapeptide repeat containing protein complement(1049050..1049574) Pelodictyon phaeoclathratiforme BU-1 6461356 YP_002017914.1 CDS Ppha_1013 NC_011060.1 1049583 1050587 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1825 glycosyl transferase, family 2; family 2 glycosyl transferase complement(1049583..1050587) Pelodictyon phaeoclathratiforme BU-1 6463509 YP_002017915.1 CDS Ppha_1014 NC_011060.1 1050580 1051023 R KEGG: cph:Cpha266_1826 anti-sigma regulatory factor, serine/threonine protein kinase; anti-sigma regulatory factor, serine/threonine protein kinase complement(1050580..1051023) Pelodictyon phaeoclathratiforme BU-1 6463745 YP_002017916.1 CDS Ppha_1015 NC_011060.1 1051058 1051381 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: plt:Plut_1366 anti-anti-sigma regulatory factor, SpoIIAA; anti-sigma-factor antagonist complement(1051058..1051381) Pelodictyon phaeoclathratiforme BU-1 6463524 YP_002017917.1 CDS Ppha_1016 NC_011060.1 1051394 1052770 R KEGG: cph:Cpha266_1828 nucleoside-diphosphate-sugar pyrophosphorylase; nucleoside-diphosphate-sugar pyrophosphorylase complement(1051394..1052770) Pelodictyon phaeoclathratiforme BU-1 6461365 YP_002017918.1 CDS Ppha_1017 NC_011060.1 1052780 1053133 R TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cph:Cpha266_1829 anti-sigma-factor antagonist; anti-sigma-factor antagonist complement(1052780..1053133) Pelodictyon phaeoclathratiforme BU-1 6461595 YP_002017919.1 CDS Ppha_1018 NC_011060.1 1053150 1053869 R PFAM: sugar transferase; KEGG: cph:Cpha266_1830 undecaprenyl-phosphate galactose phosphotransferase; undecaprenyl-phosphate galactose phosphotransferase complement(1053150..1053869) Pelodictyon phaeoclathratiforme BU-1 6461194 YP_002017920.1 CDS Ppha_1019 NC_011060.1 1053859 1055331 R KEGG: cph:Cpha266_1831 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase complement(1053859..1055331) Pelodictyon phaeoclathratiforme BU-1 6461096 YP_002017921.1 CDS Ppha_1020 NC_011060.1 1055355 1056533 R PFAM: sigma-54 factor interaction domain-containing protein; SMART: AAA ATPase; KEGG: cph:Cpha266_1832 sigma54 specific transcriptional regulator, Fis family; Fis family two component sigma-54 specific transcriptional regulator complement(1055355..1056533) Pelodictyon phaeoclathratiforme BU-1 6461292 YP_002017922.1 CDS Ppha_1021 NC_011060.1 1056593 1058287 R KEGG: cph:Cpha266_1833 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; Stage II sporulation E family protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; PAS/PAC sensor protein complement(1056593..1058287) Pelodictyon phaeoclathratiforme BU-1 6461239 YP_002017923.1 CDS Ppha_1022 NC_011060.1 1058585 1058806 D hypothetical protein 1058585..1058806 Pelodictyon phaeoclathratiforme BU-1 6461244 YP_002017924.1 CDS Ppha_1023 NC_011060.1 1058830 1059180 D KEGG: cph:Cpha266_1906 hypothetical protein; hypothetical protein 1058830..1059180 Pelodictyon phaeoclathratiforme BU-1 6462744 YP_002017925.1 CDS Ppha_1024 NC_011060.1 1059200 1060261 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: cph:Cpha266_1905 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1059200..1060261 Pelodictyon phaeoclathratiforme BU-1 6462255 YP_002017926.1 CDS Ppha_1025 NC_011060.1 1060242 1061156 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1060242..1061156 Pelodictyon phaeoclathratiforme BU-1 6461481 YP_002017927.1 CDS Ppha_1026 NC_011060.1 1061172 1062047 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1903 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1061172..1062047 Pelodictyon phaeoclathratiforme BU-1 6461452 YP_002017928.1 CDS Ppha_1027 NC_011060.1 1062098 1063354 D PFAM: peptidase M48 Ste24p; KEGG: cph:Cpha266_1902 STE24 endopeptidase; Ste24 endopeptidase 1062098..1063354 Pelodictyon phaeoclathratiforme BU-1 6463456 YP_002017929.1 CDS Ppha_1028 NC_011060.1 1063372 1064421 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cph:Cpha266_1901 porphyromonas-type peptidyl-arginine deiminase; Agmatine deiminase 1063372..1064421 Pelodictyon phaeoclathratiforme BU-1 6461451 YP_002017930.1 CDS Ppha_1029 NC_011060.1 1064523 1065455 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(1064523..1065455) Pelodictyon phaeoclathratiforme BU-1 6462107 YP_002017931.1 CDS rpmA NC_011060.1 1065581 1065835 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(1065581..1065835) Pelodictyon phaeoclathratiforme BU-1 6463603 YP_002017932.1 CDS rplU NC_011060.1 1065873 1066163 R PFAM: ribosomal protein L21; KEGG: plt:Plut_1508 50S ribosomal protein L21; 50S ribosomal protein L21 complement(1065873..1066163) Pelodictyon phaeoclathratiforme BU-1 6461237 YP_002017933.1 CDS Ppha_1032 NC_011060.1 1066251 1066688 R KEGG: cph:Cpha266_1897 hypothetical protein; hypothetical protein complement(1066251..1066688) Pelodictyon phaeoclathratiforme BU-1 6462502 YP_002017934.1 CDS Ppha_1033 NC_011060.1 1066873 1069491 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1066873..1069491 Pelodictyon phaeoclathratiforme BU-1 6462655 YP_002017935.1 CDS Ppha_1034 NC_011060.1 1069491 1070915 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1895 radical SAM protein; radical SAM protein 1069491..1070915 Pelodictyon phaeoclathratiforme BU-1 6462685 YP_002017936.1 CDS Ppha_1035 NC_011060.1 1071109 1071330 D KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein 1071109..1071330 Pelodictyon phaeoclathratiforme BU-1 6462723 YP_002017937.1 CDS Ppha_1037 NC_011060.1 1071528 1071752 D KEGG: sun:SUN_0701 hypothetical protein; hypothetical protein 1071528..1071752 Pelodictyon phaeoclathratiforme BU-1 6462644 YP_002017938.1 CDS Ppha_1038 NC_011060.1 1071863 1072132 R KEGG: rca:Rcas_0956 hypothetical protein; hypothetical protein complement(1071863..1072132) Pelodictyon phaeoclathratiforme BU-1 6462650 YP_002017939.1 CDS Ppha_1040 NC_011060.1 1072414 1073967 D PFAM: protein of unknown function DUF323; SMART: TIR protein; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; hypothetical protein 1072414..1073967 Pelodictyon phaeoclathratiforme BU-1 6462679 YP_002017940.1 CDS Ppha_1041 NC_011060.1 1074299 1076011 D PFAM: transposase IS4 family protein; KEGG: amt:Amet_0623 transposase, IS4; transposase IS4 family protein 1074299..1076011 Pelodictyon phaeoclathratiforme BU-1 6462890 YP_002017941.1 CDS Ppha_1042 NC_011060.1 1076109 1076390 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cch:Cag_0956 prevent-host-death protein; prevent-host-death family protein 1076109..1076390 Pelodictyon phaeoclathratiforme BU-1 6463644 YP_002017942.1 CDS Ppha_1043 NC_011060.1 1076387 1076716 D PFAM: plasmid stabilization system; KEGG: cch:Cag_0957 hypothetical protein; plasmid stabilization system 1076387..1076716 Pelodictyon phaeoclathratiforme BU-1 6463562 YP_002017943.1 CDS Ppha_1044 NC_011060.1 1076911 1077507 D KEGG: cph:Cpha266_1892 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase 1076911..1077507 Pelodictyon phaeoclathratiforme BU-1 6462628 YP_002017944.1 CDS Ppha_1045 NC_011060.1 1077510 1077923 D PFAM: Class I peptide chain release factor; KEGG: cch:Cag_1326 hypothetical protein; peptidyl-tRNA hydrolase domain-containing protein 1077510..1077923 Pelodictyon phaeoclathratiforme BU-1 6462959 YP_002017945.1 CDS Ppha_1046 NC_011060.1 1078094 1079200 D PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: stm:STM3529 glycerol dehydrogenase; iron-containing alcohol dehydrogenase 1078094..1079200 Pelodictyon phaeoclathratiforme BU-1 6462235 YP_002017946.1 CDS Ppha_1047 NC_011060.1 1079289 1082840 D PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; signal transduction protein with Nacht domain 1079289..1082840 Pelodictyon phaeoclathratiforme BU-1 6462687 YP_002017947.1 CDS Ppha_1048 NC_011060.1 1083038 1083367 R PFAM: PilT protein domain protein; KEGG: cch:Cag_1777 PIN (PilT N terminus) domain; PilT protein domain-containing protein complement(1083038..1083367) Pelodictyon phaeoclathratiforme BU-1 6463049 YP_002017948.1 CDS Ppha_1049 NC_011060.1 1083370 1083597 R KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein complement(1083370..1083597) Pelodictyon phaeoclathratiforme BU-1 6462039 YP_002017949.1 CDS Ppha_1050 NC_011060.1 1083804 1084073 R KEGG: bmu:Bmul_6243 hypothetical protein; hypothetical protein complement(1083804..1084073) Pelodictyon phaeoclathratiforme BU-1 6462073 YP_002017950.1 CDS Ppha_1051 NC_011060.1 1084073 1084588 R KEGG: rme:Rmet_6188 transposase Tn3; transposase Tn3 complement(1084073..1084588) Pelodictyon phaeoclathratiforme BU-1 6463491 YP_002017951.1 CDS Ppha_1052 NC_011060.1 1084750 1085310 D PFAM: resolvase; KEGG: dsh:Dshi_4084 resolvase; resolvase 1084750..1085310 Pelodictyon phaeoclathratiforme BU-1 6461641 YP_002017952.1 CDS Ppha_1053 NC_011060.1 1085366 1086037 D KEGG: cph:Cpha266_2057 hypothetical protein; hypothetical protein 1085366..1086037 Pelodictyon phaeoclathratiforme BU-1 6462967 YP_002017953.1 CDS Ppha_1054 NC_011060.1 1086034 1086336 D KEGG: cph:Cpha266_2056 hypothetical protein; hypothetical protein 1086034..1086336 Pelodictyon phaeoclathratiforme BU-1 6463729 YP_002017954.1 CDS Ppha_1056 NC_011060.1 1086946 1087572 D KEGG: plt:Plut_0829 Legionella vir region protein; vir region protein-like protein 1086946..1087572 Pelodictyon phaeoclathratiforme BU-1 6461012 YP_002017955.1 CDS Ppha_1057 NC_011060.1 1087579 1089330 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1327 ATPase; ABC transporter-like protein complement(1087579..1089330) Pelodictyon phaeoclathratiforme BU-1 6462341 YP_002017956.1 CDS Ppha_1058 NC_011060.1 1089413 1089814 D PFAM: regulatory protein MerR; KEGG: cph:Cpha266_1889 transcriptional regulator, MerR family; MerR family transcriptional regulator 1089413..1089814 Pelodictyon phaeoclathratiforme BU-1 6460963 YP_002017957.1 CDS Ppha_1059 NC_011060.1 1089866 1090966 R PFAM: bacteriochlorophyll A protein; KEGG: plt:Plut_1500 bacteriochlorophyll A protein; bacteriochlorophyll A protein complement(1089866..1090966) Pelodictyon phaeoclathratiforme BU-1 6461690 YP_002017958.1 CDS Ppha_1060 NC_011060.1 1091210 1092790 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1887 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 1091210..1092790 Pelodictyon phaeoclathratiforme BU-1 6461368 YP_002017959.1 CDS Ppha_1061 NC_011060.1 1092802 1093953 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: cph:Cpha266_1886 sigma54 specific transcriptional regulator, Fis family; Fis family sigma-54 specific transcriptional regulator complement(1092802..1093953) Pelodictyon phaeoclathratiforme BU-1 6462453 YP_002017960.1 CDS Ppha_1062 NC_011060.1 1093974 1094900 R PFAM: Sporulation domain protein; KEGG: plt:Plut_1497 hypothetical protein; sporulation domain-containing protein complement(1093974..1094900) Pelodictyon phaeoclathratiforme BU-1 6461011 YP_002017961.1 CDS Ppha_1063 NC_011060.1 1094993 1095856 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1094993..1095856 Pelodictyon phaeoclathratiforme BU-1 6462077 YP_002017962.1 CDS Ppha_1064 NC_011060.1 1095997 1096302 R KEGG: rme:Rmet_3677 histone-like nucleoid-structuring protein H-NS; histone-like nucleoid-structuring protein H-NS complement(1095997..1096302) Pelodictyon phaeoclathratiforme BU-1 6462133 YP_002017963.1 CDS Ppha_1065 NC_011060.1 1096924 1097250 R hypothetical protein complement(1096924..1097250) Pelodictyon phaeoclathratiforme BU-1 6463827 YP_002017964.1 CDS Ppha_1066 NC_011060.1 1097423 1098283 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pvi:Cvib_1320 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1097423..1098283) Pelodictyon phaeoclathratiforme BU-1 6463826 YP_002017965.1 CDS Ppha_1067 NC_011060.1 1098296 1099603 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cph:Cpha266_1882 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(1098296..1099603) Pelodictyon phaeoclathratiforme BU-1 6463824 YP_002017966.1 CDS Ppha_1068 NC_011060.1 1099822 1100055 D KEGG: cau:Caur_0486 protein kinase; hypothetical protein 1099822..1100055 Pelodictyon phaeoclathratiforme BU-1 6463823 YP_002017967.1 CDS Ppha_1069 NC_011060.1 1100203 1101753 D PFAM: Forkhead-associated protein; KEGG: bth:BT_2774 adenylate cyclase; FHA domain-containing protein 1100203..1101753 Pelodictyon phaeoclathratiforme BU-1 6463822 YP_002017968.1 CDS Ppha_1070 NC_011060.1 1101766 1102377 D PFAM: Forkhead-associated protein; KEGG: bth:BT_2773 hypothetical protein; FHA domain-containing protein 1101766..1102377 Pelodictyon phaeoclathratiforme BU-1 6463821 YP_002017969.1 CDS Ppha_1071 NC_011060.1 1102429 1104045 D PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: bth:BT_2772 protein phosphatase; protein serine/threonine phosphatase 1102429..1104045 Pelodictyon phaeoclathratiforme BU-1 6463816 YP_002017970.1 CDS Ppha_1073 NC_011060.1 1104372 1104902 D KEGG: cph:Cpha266_1383 hypothetical protein; hypothetical protein 1104372..1104902 Pelodictyon phaeoclathratiforme BU-1 6463813 YP_002017971.1 CDS Ppha_1074 NC_011060.1 1104920 1105426 D KEGG: cph:Cpha266_1384 transposase family protein; transposase family protein 1104920..1105426 Pelodictyon phaeoclathratiforme BU-1 6463812 YP_002017972.1 CDS Ppha_1075 NC_011060.1 1105475 1106140 D PFAM: protein of unknown function DUF805; KEGG: mlo:mlr4844 hypothetical protein; hypothetical protein 1105475..1106140 Pelodictyon phaeoclathratiforme BU-1 6463811 YP_002017973.1 CDS Ppha_1076 NC_011060.1 1106646 1107887 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1106646..1107887 Pelodictyon phaeoclathratiforme BU-1 6463806 YP_002017974.1 CDS Ppha_1077 NC_011060.1 1108042 1109553 D PFAM: tyrosine protein kinase; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: bth:BT_2769 serine/threonine-protein kinase PknB; serine/threonine protein kinase 1108042..1109553 Pelodictyon phaeoclathratiforme BU-1 6463802 YP_002017975.1 CDS Ppha_1078 NC_011060.1 1109592 1110851 D PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bth:BT_2769 serine/threonine-protein kinase PknB; serine/threonine protein kinase 1109592..1110851 Pelodictyon phaeoclathratiforme BU-1 6463799 YP_002017976.1 CDS Ppha_1079 NC_011060.1 1110890 1111693 D PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; hypothetical protein 1110890..1111693 Pelodictyon phaeoclathratiforme BU-1 6463800 YP_002017977.1 CDS Ppha_1080 NC_011060.1 1112340 1112645 D KEGG: pin:Ping_1761 hypothetical protein; hypothetical protein 1112340..1112645 Pelodictyon phaeoclathratiforme BU-1 6463796 YP_002017978.1 CDS Ppha_1082 NC_011060.1 1113001 1113591 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_0700 thiolredoxin peroxidase; alkyl hydroperoxide reductase 1113001..1113591 Pelodictyon phaeoclathratiforme BU-1 6463793 YP_002017979.1 CDS Ppha_1083 NC_011060.1 1113757 1115202 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1113757..1115202) Pelodictyon phaeoclathratiforme BU-1 6463792 YP_002017980.1 CDS Ppha_1084 NC_011060.1 1115260 1115997 R KEGG: cph:Cpha266_1876 hypothetical protein; hypothetical protein complement(1115260..1115997) Pelodictyon phaeoclathratiforme BU-1 6462742 YP_002017981.1 CDS Ppha_1085 NC_011060.1 1116190 1117089 D TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: pvi:Cvib_1315 modification methylase, HemK family; protein-(glutamine-N5) methyltransferase 1116190..1117089 Pelodictyon phaeoclathratiforme BU-1 6463791 YP_002017982.1 CDS Ppha_1086 NC_011060.1 1117253 1118305 D TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: plt:Plut_1489 negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA 1117253..1118305 Pelodictyon phaeoclathratiforme BU-1 6461586 YP_002017983.1 CDS Ppha_1087 NC_011060.1 1118323 1118946 D PFAM: GrpE protein; KEGG: cch:Cag_1423 molecular chaperone GrpE (heat shock protein)-like; GrpE protein HSP-70 cofactor 1118323..1118946 Pelodictyon phaeoclathratiforme BU-1 6461891 YP_002017984.1 CDS Ppha_1088 NC_011060.1 1119004 1120188 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1119004..1120188 Pelodictyon phaeoclathratiforme BU-1 6461355 YP_002017985.1 CDS Ppha_1089 NC_011060.1 1120278 1121507 R PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: cph:Cpha266_1271 malate dehydrogenase (oxaloacetate-decarboxylating); malate dehydrogenase complement(1120278..1121507) Pelodictyon phaeoclathratiforme BU-1 6461124 YP_002017986.1 CDS Ppha_1090 NC_011060.1 1121751 1122227 R KEGG: plt:Plut_1486 hypothetical protein; hypothetical protein complement(1121751..1122227) Pelodictyon phaeoclathratiforme BU-1 6461864 YP_002017987.1 CDS Ppha_1091 NC_011060.1 1122358 1123362 R KEGG: cch:Cag_1420 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(1122358..1123362) Pelodictyon phaeoclathratiforme BU-1 6463480 YP_002017988.1 CDS Ppha_1092 NC_011060.1 1123475 1124956 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_1869 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(1123475..1124956) Pelodictyon phaeoclathratiforme BU-1 6463472 YP_002017989.1 CDS Ppha_1093 NC_011060.1 1125010 1126320 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: cch:Cag_0448 DegT/DnrJ/EryC1/StrS family protein; DegT/DnrJ/EryC1/StrS aminotransferase 1125010..1126320 Pelodictyon phaeoclathratiforme BU-1 6462817 YP_002017990.1 CDS Ppha_1094 NC_011060.1 1126413 1127726 R PFAM: major facilitator superfamily MFS_1; KEGG: cch:Cag_0889 transporter; major facilitator superfamily protein complement(1126413..1127726) Pelodictyon phaeoclathratiforme BU-1 6462828 YP_002017991.1 CDS Ppha_1095 NC_011060.1 1127746 1128654 R PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_2528 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1127746..1128654) Pelodictyon phaeoclathratiforme BU-1 6462859 YP_002017992.1 CDS Ppha_1096 NC_011060.1 1128686 1128943 R KEGG: cph:Cpha266_0092 virulence associated protein B; virulence associated protein B complement(1128686..1128943) Pelodictyon phaeoclathratiforme BU-1 6463100 YP_002017993.1 CDS Ppha_1097 NC_011060.1 1128965 1129216 R KEGG: mar:MAE_20900 hypothetical protein; hypothetical protein complement(1128965..1129216) Pelodictyon phaeoclathratiforme BU-1 6463189 YP_002017994.1 CDS Ppha_1098 NC_011060.1 1129218 1129478 R KEGG: mar:MAE_20890 hypothetical protein; hypothetical protein complement(1129218..1129478) Pelodictyon phaeoclathratiforme BU-1 6463423 YP_002017995.1 CDS Ppha_1099 NC_011060.1 1129503 1130195 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1866 ABC transporter related; ABC transporter-like protein complement(1129503..1130195) Pelodictyon phaeoclathratiforme BU-1 6463290 YP_002017996.1 CDS proA NC_011060.1 1130199 1131455 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(1130199..1131455) Pelodictyon phaeoclathratiforme BU-1 6463463 YP_002017997.1 CDS Ppha_1101 NC_011060.1 1131468 1132556 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1131468..1132556) Pelodictyon phaeoclathratiforme BU-1 6462773 YP_002017998.1 CDS Ppha_1102 NC_011060.1 1132560 1132883 R PFAM: small multidrug resistance protein; KEGG: cph:Cpha266_1863 small multidrug resistance protein; small multidrug resistance protein complement(1132560..1132883) Pelodictyon phaeoclathratiforme BU-1 6462777 YP_002017999.1 CDS Ppha_1103 NC_011060.1 1133034 1135184 D PFAM: UspA domain protein; sodium/hydrogen exchanger; KEGG: cph:Cpha266_1862 sodium/hydrogen exchanger; sodium/hydrogen exchanger 1133034..1135184 Pelodictyon phaeoclathratiforme BU-1 6462792 YP_002018000.1 CDS Ppha_1104 NC_011060.1 1135285 1136805 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; protein of unknown function DUF1568; KEGG: cph:Cpha266_1487 protein of unknown function DUF1568; methionine-R-sulfoxide reductase 1135285..1136805 Pelodictyon phaeoclathratiforme BU-1 6462830 YP_002018001.1 CDS Ppha_1105 NC_011060.1 1136946 1137665 R PFAM: Curli production assembly/transport component CsgG; KEGG: cph:Cpha266_1717 curli production assembly/transport component CsgG; curli production assembly/transport component CsgG complement(1136946..1137665) Pelodictyon phaeoclathratiforme BU-1 6462761 YP_002018002.1 CDS Ppha_1106 NC_011060.1 1137899 1138318 R PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0513 NUDIX hydrolase; NUDIX hydrolase complement(1137899..1138318) Pelodictyon phaeoclathratiforme BU-1 6462801 YP_002018003.1 CDS Ppha_1107 NC_011060.1 1138538 1139773 D KEGG: hch:HCH_04190 hypothetical protein; hypothetical protein 1138538..1139773 Pelodictyon phaeoclathratiforme BU-1 6462840 YP_002018004.1 CDS Ppha_1108 NC_011060.1 1139961 1141022 R PFAM: GTPase EngC; KEGG: cph:Cpha266_1597 GTPase EngC; GTPase EngC complement(1139961..1141022) Pelodictyon phaeoclathratiforme BU-1 6463048 YP_002018005.1 CDS Ppha_1109 NC_011060.1 1141219 1142004 D PFAM: penicillin-binding protein transpeptidase; KEGG: cph:Cpha266_1596 beta-lactamase; Beta-lactamase 1141219..1142004 Pelodictyon phaeoclathratiforme BU-1 6463592 YP_002018006.1 CDS Ppha_1110 NC_011060.1 1142141 1142425 D KEGG: cch:Cag_1210 hypothetical protein; hypothetical protein 1142141..1142425 Pelodictyon phaeoclathratiforme BU-1 6463356 YP_002018007.1 CDS Ppha_1111 NC_011060.1 1142506 1143375 R PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1569 UbiA prenyltransferase; UbiA prenyltransferase complement(1142506..1143375) Pelodictyon phaeoclathratiforme BU-1 6463305 YP_002018008.1 CDS Ppha_1112 NC_011060.1 1143831 1144358 R PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; KEGG: fps:FP1904 muramidase; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase complement(1143831..1144358) Pelodictyon phaeoclathratiforme BU-1 6463393 YP_002018009.1 CDS Ppha_1113 NC_011060.1 1145030 1145383 R KEGG: cph:Cpha266_1975 hypothetical protein; hypothetical protein complement(1145030..1145383) Pelodictyon phaeoclathratiforme BU-1 6462709 YP_002018010.1 CDS Ppha_1114 NC_011060.1 1145733 1146620 D KEGG: cph:Cpha266_1071 hypothetical protein; hypothetical protein 1145733..1146620 Pelodictyon phaeoclathratiforme BU-1 6462710 YP_002018011.1 CDS Ppha_1115 NC_011060.1 1146625 1147092 D KEGG: ppd:Ppro_1338 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 1146625..1147092 Pelodictyon phaeoclathratiforme BU-1 6462695 YP_002018012.1 CDS Ppha_1116 NC_011060.1 1147242 1148111 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: plt:Plut_0805 AraC family transcripiotnal regulator; AraC family transcripiotnal regulator 1147242..1148111 Pelodictyon phaeoclathratiforme BU-1 6462724 YP_002018013.1 CDS Ppha_1117 NC_011060.1 1148140 1149270 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: cph:Cpha266_1564 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1148140..1149270 Pelodictyon phaeoclathratiforme BU-1 6462804 YP_002018014.1 CDS Ppha_1118 NC_011060.1 1149490 1152582 D PFAM: acriflavin resistance protein; KEGG: cte:CT1287 multidrug resistance protein, AcrB/AcrD family; acriflavin resistance protein 1149490..1152582 Pelodictyon phaeoclathratiforme BU-1 6463005 YP_002018015.1 CDS Ppha_1119 NC_011060.1 1152611 1154032 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: plt:Plut_0808 RND efflux system, outer membrane lipoprotein, NodT; NodT family RND efflux system outer membrane lipoprotein 1152611..1154032 Pelodictyon phaeoclathratiforme BU-1 6463284 YP_002018016.1 CDS Ppha_1120 NC_011060.1 1154089 1154934 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pvi:Cvib_0735 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1154089..1154934 Pelodictyon phaeoclathratiforme BU-1 6463321 YP_002018017.1 CDS Ppha_1121 NC_011060.1 1155112 1157094 D PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: tet:TTHERM_00778410 SLEI family protein Pfam: TPR_2 TPR_1 Sel1 Bin3 DUF627 TPR_3 PUB HHA PPR Mad3_BUB1_I VAR1 PLU-1 Mg296 FAT MIT PROSITE: TPR TPR_REGION; hypothetical protein 1155112..1157094 Pelodictyon phaeoclathratiforme BU-1 6462683 YP_002018018.1 CDS Ppha_1122 NC_011060.1 1157260 1157940 D PFAM: protein of unknown function DUF159; KEGG: cph:Cpha266_1054 protein of unknown function DUF159; hypothetical protein 1157260..1157940 Pelodictyon phaeoclathratiforme BU-1 6462688 YP_002018019.1 CDS Ppha_1123 NC_011060.1 1158045 1161554 D PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_0633 helicase domain protein; helicase domain-containing protein 1158045..1161554 Pelodictyon phaeoclathratiforme BU-1 6462682 YP_002018020.1 CDS Ppha_1124 NC_011060.1 1161568 1162752 D PFAM: AAA-4 family protein; KEGG: cch:Cag_1221 transcriptional regulator; transcriptional regulator 1161568..1162752 Pelodictyon phaeoclathratiforme BU-1 6462741 YP_002018021.1 CDS Ppha_1125 NC_011060.1 1162749 1163732 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aeh:Mlg_2299 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1162749..1163732 Pelodictyon phaeoclathratiforme BU-1 6463501 YP_002018022.1 CDS Ppha_1126 NC_011060.1 1164204 1167398 D PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: cte:CT0906 DNA-dependent ATPase, SNF2 family protein; helicase domain-containing protein 1164204..1167398 Pelodictyon phaeoclathratiforme BU-1 6463236 YP_002018023.1 CDS Ppha_1127 NC_011060.1 1167395 1168153 D KEGG: cte:CT0907 hypothetical protein; hypothetical protein 1167395..1168153 Pelodictyon phaeoclathratiforme BU-1 6463278 YP_002018024.1 CDS Ppha_1128 NC_011060.1 1168150 1170081 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bpt:Bpet4236 type III restriction system methylase; adenine-specific DNA-methyltransferase 1168150..1170081 Pelodictyon phaeoclathratiforme BU-1 6462643 YP_002018025.1 CDS Ppha_1129 NC_011060.1 1170084 1171307 D PFAM: protein of unknown function DUF1016; KEGG: amr:AM1_2231 hypothetical protein; hypothetical protein 1170084..1171307 Pelodictyon phaeoclathratiforme BU-1 6462649 YP_002018026.1 CDS Ppha_1130 NC_011060.1 1171304 1174279 D KEGG: cte:CT0911 type III restriction system endonuclease; type III restriction system endonuclease 1171304..1174279 Pelodictyon phaeoclathratiforme BU-1 6462667 YP_002018027.1 CDS Ppha_1132 NC_011060.1 1175605 1176726 D hypothetical protein 1175605..1176726 Pelodictyon phaeoclathratiforme BU-1 6463130 YP_002018028.1 CDS Ppha_1134 NC_011060.1 1178982 1179581 R KEGG: eba:ebA5228 hypothetical protein; hypothetical protein complement(1178982..1179581) Pelodictyon phaeoclathratiforme BU-1 6463536 YP_002018029.1 CDS Ppha_1135 NC_011060.1 1179578 1180921 R KEGG: eba:ebA5226 hypothetical protein; hypothetical protein complement(1179578..1180921) Pelodictyon phaeoclathratiforme BU-1 6463684 YP_002018030.1 CDS Ppha_1137 NC_011060.1 1182682 1182930 D hypothetical protein 1182682..1182930 Pelodictyon phaeoclathratiforme BU-1 6463167 YP_002018031.1 CDS Ppha_1138 NC_011060.1 1182930 1184276 D hypothetical protein 1182930..1184276 Pelodictyon phaeoclathratiforme BU-1 6461513 YP_002018032.1 CDS Ppha_1140 NC_011060.1 1190554 1192767 R PFAM: protein of unknown function DUF255; KEGG: cph:Cpha266_1460 protein of unknown function DUF255; hypothetical protein complement(1190554..1192767) Pelodictyon phaeoclathratiforme BU-1 6463171 YP_002018033.1 CDS Ppha_1141 NC_011060.1 1192859 1193875 D this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae; bifunctional methionine sulfoxide reductase B/A protein 1192859..1193875 Pelodictyon phaeoclathratiforme BU-1 6462427 YP_002018034.1 CDS Ppha_1142 NC_011060.1 1194039 1194716 R alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols; peroxiredoxin complement(1194039..1194716) Pelodictyon phaeoclathratiforme BU-1 6463611 YP_002018035.1 CDS Ppha_1143 NC_011060.1 1194985 1195530 R PFAM: conserved hypothetical protein; KEGG: pvi:Cvib_0743 conserved hypothetical protein 730; hypothetical protein complement(1194985..1195530) Pelodictyon phaeoclathratiforme BU-1 6463172 YP_002018036.1 CDS Ppha_1144 NC_011060.1 1195538 1196167 R PFAM: glycosyl transferase family 2; KEGG: cch:Cag_1106 glycosyl transferase; family 2 glycosyl transferase complement(1195538..1196167) Pelodictyon phaeoclathratiforme BU-1 6463237 YP_002018037.1 CDS Ppha_1145 NC_011060.1 1196164 1197165 R TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1449 bacteriochlorophyll/chlorophyll a synthase; bacteriochlorophyll/chlorophyll a synthase complement(1196164..1197165) Pelodictyon phaeoclathratiforme BU-1 6463219 YP_002018038.1 CDS Ppha_1146 NC_011060.1 1197392 1197856 D KEGG: cph:Cpha266_1423 hypothetical protein; hypothetical protein 1197392..1197856 Pelodictyon phaeoclathratiforme BU-1 6462305 YP_002018039.1 CDS Ppha_1147 NC_011060.1 1197901 1198527 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: cte:CT1267 amino acid efflux protein; lysine exporter protein LysE/YggA 1197901..1198527 Pelodictyon phaeoclathratiforme BU-1 6463116 YP_002018040.1 CDS Ppha_1148 NC_011060.1 1198638 1199810 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cch:Cag_1081 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1198638..1199810 Pelodictyon phaeoclathratiforme BU-1 6463093 YP_002018041.1 CDS Ppha_1149 NC_011060.1 1199817 1200152 D PFAM: Stress responsive alpha-beta barrel domain protein; KEGG: cte:CT1263 hypothetical protein; stress responsive alpha-beta barrel domain-containing protein 1199817..1200152 Pelodictyon phaeoclathratiforme BU-1 6463132 YP_002018042.1 CDS Ppha_1150 NC_011060.1 1200237 1200425 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1216 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin complement(1200237..1200425) Pelodictyon phaeoclathratiforme BU-1 6463030 YP_002018043.1 CDS Ppha_1151 NC_011060.1 1200559 1200750 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1215 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin complement(1200559..1200750) Pelodictyon phaeoclathratiforme BU-1 6463064 YP_002018044.1 CDS Ppha_1152 NC_011060.1 1200881 1201846 R PFAM: PhoH family protein; KEGG: cch:Cag_1083 PhoH family protein; PhoH family protein complement(1200881..1201846) Pelodictyon phaeoclathratiforme BU-1 6463058 YP_002018045.1 CDS Ppha_1153 NC_011060.1 1201859 1202860 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: cch:Cag_1084 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase complement(1201859..1202860) Pelodictyon phaeoclathratiforme BU-1 6462257 YP_002018046.1 CDS Ppha_1154 NC_011060.1 1202944 1205721 R KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(1202944..1205721) Pelodictyon phaeoclathratiforme BU-1 6463534 YP_002018047.1 CDS Ppha_1155 NC_011060.1 1206089 1206541 R KEGG: plt:Plut_1207 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 subunit complement(1206089..1206541) Pelodictyon phaeoclathratiforme BU-1 6462986 YP_002018048.1 CDS Ppha_1156 NC_011060.1 1206717 1207784 D TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: pvi:Cvib_0754 histidinol phosphate aminotransferase; histidinol-phosphate aminotransferase 1206717..1207784 Pelodictyon phaeoclathratiforme BU-1 6462970 YP_002018049.1 CDS Ppha_1157 NC_011060.1 1207787 1208329 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cph:Cpha266_1411 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 1207787..1208329 Pelodictyon phaeoclathratiforme BU-1 6463018 YP_002018050.1 CDS Ppha_1158 NC_011060.1 1208393 1209223 D PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_1410 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1208393..1209223 Pelodictyon phaeoclathratiforme BU-1 6462995 YP_002018051.1 CDS Ppha_1159 NC_011060.1 1209220 1209792 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1209220..1209792) Pelodictyon phaeoclathratiforme BU-1 6463564 YP_002018052.1 CDS hppA NC_011060.1 1210099 1212579 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1210099..1212579 Pelodictyon phaeoclathratiforme BU-1 6463555 YP_002018053.1 CDS Ppha_1161 NC_011060.1 1212660 1213202 R PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1984 pentapeptide repeat protein; pentapeptide repeat-containing protein complement(1212660..1213202) Pelodictyon phaeoclathratiforme BU-1 6463604 YP_002018054.1 CDS Ppha_1162 NC_011060.1 1213561 1214766 D KEGG: cre:CHLREDRAFT_190319 hypothetical protein Pfam: Dioxygenase_C PROSITE: ALA_RICH; hypothetical protein 1213561..1214766 Pelodictyon phaeoclathratiforme BU-1 6462902 YP_002018055.1 CDS Ppha_1163 NC_011060.1 1214960 1215982 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_1059 hypothetical protein; NmrA family protein 1214960..1215982 Pelodictyon phaeoclathratiforme BU-1 6462553 YP_002018056.1 CDS Ppha_1164 NC_011060.1 1216120 1216911 D PFAM: band 7 protein; KEGG: cch:Cag_1233 band 7 protein; hypothetical protein 1216120..1216911 Pelodictyon phaeoclathratiforme BU-1 6462903 YP_002018057.1 CDS Ppha_1165 NC_011060.1 1216924 1217382 D PFAM: UspA domain protein; KEGG: pvi:Cvib_1041 UspA domain protein; UspA domain-containing protein 1216924..1217382 Pelodictyon phaeoclathratiforme BU-1 6462923 YP_002018058.1 CDS Ppha_1166 NC_011060.1 1217366 1218379 R functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase complement(1217366..1218379) Pelodictyon phaeoclathratiforme BU-1 6463015 YP_002018059.1 CDS Ppha_1167 NC_011060.1 1218543 1220681 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(1218543..1220681) Pelodictyon phaeoclathratiforme BU-1 6463525 YP_002018060.1 CDS Ppha_1168 NC_011060.1 1220678 1222453 R PFAM: methylmalonyl-CoA mutase; KEGG: cph:Cpha266_1165 methylmalonyl-CoA mutase; methylmalonyl-CoA mutase complement(1220678..1222453) Pelodictyon phaeoclathratiforme BU-1 6463477 YP_002018061.1 CDS Ppha_1169 NC_011060.1 1222450 1224252 R KEGG: cph:Cpha266_1166 acetyl-CoA carboxylase alpha subunit-like; acetyl-CoA carboxylase subunit alpha-like protein complement(1222450..1224252) Pelodictyon phaeoclathratiforme BU-1 6462852 YP_002018062.1 CDS Ppha_1170 NC_011060.1 1224281 1224688 R TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_1167 methylmalonyl-CoA epimerase; methylmalonyl-CoA epimerase complement(1224281..1224688) Pelodictyon phaeoclathratiforme BU-1 6462823 YP_002018063.1 CDS Ppha_1171 NC_011060.1 1224685 1226607 R PFAM: AMP-dependent synthetase and ligase; KEGG: cch:Cag_1125 propionate--CoA ligase; AMP-dependent synthetase and ligase complement(1224685..1226607) Pelodictyon phaeoclathratiforme BU-1 6462853 YP_002018064.1 CDS ksgA NC_011060.1 1226778 1227566 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1226778..1227566) Pelodictyon phaeoclathratiforme BU-1 6463631 YP_002018065.1 CDS Ppha_1173 NC_011060.1 1227638 1228621 D PFAM: transketolase; transketolase; KEGG: cch:Cag_1192 transketolase-like; transketolase 1227638..1228621 Pelodictyon phaeoclathratiforme BU-1 6462470 YP_002018066.1 CDS Ppha_1174 NC_011060.1 1228661 1228996 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1171 conserved hypothetical protein 103; hypothetical protein 1228661..1228996 Pelodictyon phaeoclathratiforme BU-1 6462391 YP_002018067.1 CDS recR NC_011060.1 1229003 1229617 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1229003..1229617 Pelodictyon phaeoclathratiforme BU-1 6463485 YP_002018068.1 CDS Ppha_1176 NC_011060.1 1229649 1231037 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase; Carotene 7,8-desaturase 1229649..1231037 Pelodictyon phaeoclathratiforme BU-1 6463563 YP_002018069.1 CDS Ppha_1177 NC_011060.1 1231177 1233018 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: GAF domain protein; KEGG: plt:Plut_1394 GAF sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase complement(1231177..1233018) Pelodictyon phaeoclathratiforme BU-1 6460889 YP_002018070.1 CDS Ppha_1178 NC_011060.1 1233379 1234050 D PFAM: NADPH-dependent FMN reductase; KEGG: cph:Cpha266_1959 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1233379..1234050 Pelodictyon phaeoclathratiforme BU-1 6462728 YP_002018071.1 CDS Ppha_1179 NC_011060.1 1234634 1234894 D KEGG: ppd:Ppro_1116 transcriptional regulator, CopG family; CopG family transcriptional regulator 1234634..1234894 Pelodictyon phaeoclathratiforme BU-1 6462496 YP_002018072.1 CDS Ppha_1180 NC_011060.1 1234875 1235150 D PFAM: plasmid stabilization system; KEGG: ppd:Ppro_1115 addiction module toxin, RelE/StbE family; plasmid stabilization system 1234875..1235150 Pelodictyon phaeoclathratiforme BU-1 6462424 YP_002018073.1 CDS Ppha_1183 NC_011060.1 1235551 1236813 R KEGG: fjo:Fjoh_3045 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(1235551..1236813) Pelodictyon phaeoclathratiforme BU-1 6462810 YP_002018074.1 CDS Ppha_1184 NC_011060.1 1236964 1237263 D KEGG: sat:SYN_02218 cation transport ATPase; hypothetical protein 1236964..1237263 Pelodictyon phaeoclathratiforme BU-1 6462564 YP_002018075.1 CDS Ppha_1185 NC_011060.1 1237595 1238521 D PFAM: Mg2 transporter protein CorA family protein; KEGG: fjo:Fjoh_0242 Mg2+ transporter protein, CorA family protein; Mg2 transporter protein CorA family protein 1237595..1238521 Pelodictyon phaeoclathratiforme BU-1 6462543 YP_002018076.1 CDS Ppha_1186 NC_011060.1 1238518 1239546 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: cph:Cpha266_1021 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(1238518..1239546) Pelodictyon phaeoclathratiforme BU-1 6463571 YP_002018077.1 CDS Ppha_1187 NC_011060.1 1239654 1240055 D KEGG: cph:Cpha266_1020 hypothetical protein; hypothetical protein 1239654..1240055 Pelodictyon phaeoclathratiforme BU-1 6462370 YP_002018078.1 CDS Ppha_1188 NC_011060.1 1240131 1240841 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1240131..1240841 Pelodictyon phaeoclathratiforme BU-1 6462567 YP_002018079.1 CDS Ppha_1189 NC_011060.1 1240871 1241515 D PFAM: hypothetical protein; KEGG: cph:Cpha266_1018 DedA family protein; hypothetical protein 1240871..1241515 Pelodictyon phaeoclathratiforme BU-1 6462558 YP_002018080.1 CDS Ppha_1190 NC_011060.1 1241593 1242504 D PFAM: transketolase; KEGG: cph:Cpha266_1017 transketolase subunit A; transketolase 1241593..1242504 Pelodictyon phaeoclathratiforme BU-1 6463682 YP_002018081.1 CDS Ppha_1191 NC_011060.1 1242519 1243055 D PFAM: Protein of unknown function methylase KEGG: cph:Cpha266_1016 conserved hypothetical protein 95; hypothetical protein 1242519..1243055 Pelodictyon phaeoclathratiforme BU-1 6463063 YP_002018082.1 CDS coaD NC_011060.1 1243069 1243560 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1243069..1243560 Pelodictyon phaeoclathratiforme BU-1 6463062 YP_002018083.1 CDS Ppha_1193 NC_011060.1 1243586 1244794 D PFAM: aminotransferase class V; aminotransferase class I and II; KEGG: cph:Cpha266_1014 aminotransferase; class I and II aminotransferase 1243586..1244794 Pelodictyon phaeoclathratiforme BU-1 6462983 YP_002018084.1 CDS Ppha_1194 NC_011060.1 1244802 1245575 D PFAM: phospholipid/glycerol acyltransferase; KEGG: cph:Cpha266_1013 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1244802..1245575 Pelodictyon phaeoclathratiforme BU-1 6462531 YP_002018085.1 CDS Ppha_1195 NC_011060.1 1245765 1246742 D PFAM: PSP1 domain protein; KEGG: cph:Cpha266_1012 PSP1 domain protein; PSP1 domain-containing protein 1245765..1246742 Pelodictyon phaeoclathratiforme BU-1 6462539 YP_002018086.1 CDS metG NC_011060.1 1247316 1249418 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1247316..1249418 Pelodictyon phaeoclathratiforme BU-1 6463090 YP_002018087.1 CDS Ppha_1198 NC_011060.1 1249597 1250850 D PFAM: conserved hypothetical protein; KEGG: cch:Cag_1396 hypothetical protein; hypothetical protein 1249597..1250850 Pelodictyon phaeoclathratiforme BU-1 6463568 YP_002018088.1 CDS Ppha_1199 NC_011060.1 1250857 1251975 R catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge; cyclopropane-fatty-acyl-phospholipid synthase complement(1250857..1251975) Pelodictyon phaeoclathratiforme BU-1 6462490 YP_002018089.1 CDS Ppha_1200 NC_011060.1 1252377 1253015 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cch:Cag_1395 anti-anti-sigma factor; anti-sigma-factor antagonist complement(1252377..1253015) Pelodictyon phaeoclathratiforme BU-1 6463584 YP_002018090.1 CDS Ppha_1201 NC_011060.1 1253230 1254186 R KEGG: cte:CT0973 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(1253230..1254186) Pelodictyon phaeoclathratiforme BU-1 6463632 YP_002018091.1 CDS Ppha_1202 NC_011060.1 1254857 1258237 D KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1254857..1258237 Pelodictyon phaeoclathratiforme BU-1 6463577 YP_002018092.1 CDS Ppha_1203 NC_011060.1 1258261 1258599 R PFAM: membrane protein of unknown function; KEGG: cph:Cpha266_0995 membrane protein of unknown function; hypothetical protein complement(1258261..1258599) Pelodictyon phaeoclathratiforme BU-1 6462740 YP_002018093.1 CDS Ppha_1204 NC_011060.1 1258698 1260071 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1258698..1260071) Pelodictyon phaeoclathratiforme BU-1 6462968 YP_002018094.1 CDS Ppha_1205 NC_011060.1 1260078 1260965 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1260078..1260965) Pelodictyon phaeoclathratiforme BU-1 6463260 YP_002018095.1 CDS Ppha_1206 NC_011060.1 1261164 1261742 D KEGG: cph:Cpha266_1548 hypothetical protein; hypothetical protein 1261164..1261742 Pelodictyon phaeoclathratiforme BU-1 6462674 YP_002018096.1 CDS Ppha_1207 NC_011060.1 1261735 1263183 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cch:Cag_0781 sigma-54 factor; RNA polymerase sigma 54 subunit RpoN 1261735..1263183 Pelodictyon phaeoclathratiforme BU-1 6463367 YP_002018097.1 CDS Ppha_1208 NC_011060.1 1263187 1263735 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1263187..1263735 Pelodictyon phaeoclathratiforme BU-1 6463545 YP_002018098.1 CDS hslU NC_011060.1 1263795 1265285 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1263795..1265285 Pelodictyon phaeoclathratiforme BU-1 6463531 YP_002018099.1 CDS Ppha_1210 NC_011060.1 1265343 1265798 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1265343..1265798 Pelodictyon phaeoclathratiforme BU-1 6463593 YP_002018100.1 CDS Ppha_1211 NC_011060.1 1265781 1266254 R PFAM: DoxX family protein; KEGG: cph:Cpha266_1543 DoxX family protein; DoxX family protein complement(1265781..1266254) Pelodictyon phaeoclathratiforme BU-1 6462879 YP_002018101.1 CDS Ppha_1212 NC_011060.1 1266266 1267570 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1266266..1267570) Pelodictyon phaeoclathratiforme BU-1 6463352 YP_002018102.1 CDS Ppha_1213 NC_011060.1 1267659 1269098 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cch:Cag_0722 HDIG; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1267659..1269098) Pelodictyon phaeoclathratiforme BU-1 6463092 YP_002018103.1 CDS Ppha_1214 NC_011060.1 1269124 1270158 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cch:Cag_0723 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein complement(1269124..1270158) Pelodictyon phaeoclathratiforme BU-1 6463114 YP_002018104.1 CDS Ppha_1215 NC_011060.1 1270201 1271472 R PFAM: major facilitator superfamily MFS_1; KEGG: plt:Plut_1149 drug resistance protein; major facilitator superfamily protein complement(1270201..1271472) Pelodictyon phaeoclathratiforme BU-1 6463496 YP_002018105.1 CDS Ppha_1216 NC_011060.1 1271552 1272490 R PFAM: periplasmic binding protein; KEGG: plt:Plut_1148 ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein complement(1271552..1272490) Pelodictyon phaeoclathratiforme BU-1 6463517 YP_002018106.1 CDS Ppha_1217 NC_011060.1 1272691 1275819 D PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: spc:Sputcn32_3523 protein of unknown function DUF450; hypothetical protein 1272691..1275819 Pelodictyon phaeoclathratiforme BU-1 6463510 YP_002018107.1 CDS Ppha_1218 NC_011060.1 1275813 1277447 D PFAM: N-6 DNA methylase; KEGG: spc:Sputcn32_3524 N-6 DNA methylase; N-6 DNA methylase 1275813..1277447 Pelodictyon phaeoclathratiforme BU-1 6462154 YP_002018108.1 CDS Ppha_1219 NC_011060.1 1277440 1278678 D KEGG: spc:Sputcn32_3525 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain 1277440..1278678 Pelodictyon phaeoclathratiforme BU-1 6463540 YP_002018109.1 CDS Ppha_1220 NC_011060.1 1278990 1280315 D PFAM: pentapeptide repeat protein; SMART: TIR protein; KEGG: cte:CT1045 pentapeptide repeat family protein; pentapeptide repeat-containing protein 1278990..1280315 Pelodictyon phaeoclathratiforme BU-1 6463301 YP_002018110.1 CDS Ppha_1221 NC_011060.1 1280717 1281466 D hypothetical protein 1280717..1281466 Pelodictyon phaeoclathratiforme BU-1 6461977 YP_002018111.1 CDS Ppha_1222 NC_011060.1 1281532 1282527 D PFAM: pentapeptide repeat protein; SMART: TIR protein; KEGG: cte:CT1045 pentapeptide repeat family protein; pentapeptide repeat-containing protein 1281532..1282527 Pelodictyon phaeoclathratiforme BU-1 6463375 YP_002018112.1 CDS Ppha_1223 NC_011060.1 1282536 1282994 R KEGG: fjo:Fjoh_3614 hypothetical protein; hypothetical protein complement(1282536..1282994) Pelodictyon phaeoclathratiforme BU-1 6462880 YP_002018113.1 CDS Ppha_1224 NC_011060.1 1282991 1283542 R KEGG: fjo:Fjoh_3615 hypothetical protein; hypothetical protein complement(1282991..1283542) Pelodictyon phaeoclathratiforme BU-1 6463469 YP_002018114.1 CDS Ppha_1225 NC_011060.1 1283864 1284100 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: cch:Cag_1311 hypothetical protein; DNA-binding domain-containing protein 1283864..1284100 Pelodictyon phaeoclathratiforme BU-1 6463464 YP_002018115.1 CDS Ppha_1226 NC_011060.1 1284148 1284846 D PFAM: protein of unknown function DUF1016; KEGG: ava:Ava_4169 protein of unknown function DUF1016; hypothetical protein 1284148..1284846 Pelodictyon phaeoclathratiforme BU-1 6462120 YP_002018116.1 CDS Ppha_1227 NC_011060.1 1284843 1285400 R PFAM: NUDIX hydrolase; KEGG: cch:Cag_0727 NUDIX/MutT family protein; NUDIX hydrolase complement(1284843..1285400) Pelodictyon phaeoclathratiforme BU-1 6463471 YP_002018117.1 CDS Ppha_1228 NC_011060.1 1285429 1286322 R PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 hypothetical protein; hypothetical protein complement(1285429..1286322) Pelodictyon phaeoclathratiforme BU-1 6462048 YP_002018118.1 CDS Ppha_1229 NC_011060.1 1286524 1286988 D PFAM: cyclase/dehydrase; KEGG: cte:CT0933 hypothetical protein; cyclase/dehydrase 1286524..1286988 Pelodictyon phaeoclathratiforme BU-1 6463372 YP_002018119.1 CDS Ppha_1230 NC_011060.1 1287015 1288709 D TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; KEGG: pvi:Cvib_0805 Na+/Pi-cotransporter; Na/Pi-cotransporter II-like protein 1287015..1288709 Pelodictyon phaeoclathratiforme BU-1 6463397 YP_002018120.1 CDS Ppha_1231 NC_011060.1 1288862 1290217 D KEGG: cph:Cpha266_2262 hypothetical protein; hypothetical protein 1288862..1290217 Pelodictyon phaeoclathratiforme BU-1 6463396 YP_002018121.1 CDS Ppha_1232 NC_011060.1 1290240 1291859 D KEGG: cph:Cpha266_2261 DnaK like protein; DnaK-like protein 1290240..1291859 Pelodictyon phaeoclathratiforme BU-1 6463460 YP_002018122.1 CDS Ppha_1233 NC_011060.1 1291887 1293419 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2260 AAA ATPase, central domain protein; ATPase AAA 1291887..1293419 Pelodictyon phaeoclathratiforme BU-1 6463411 YP_002018123.1 CDS Ppha_1234 NC_011060.1 1293442 1294239 D PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_2259 protein of unknown function DUF323; hypothetical protein 1293442..1294239 Pelodictyon phaeoclathratiforme BU-1 6463493 YP_002018124.1 CDS Ppha_1236 NC_011060.1 1294693 1295271 D hypothetical protein 1294693..1295271 Pelodictyon phaeoclathratiforme BU-1 6463309 YP_002018125.1 CDS Ppha_1237 NC_011060.1 1295410 1295520 D hypothetical protein 1295410..1295520 Pelodictyon phaeoclathratiforme BU-1 6463302 YP_002018126.1 CDS Ppha_1238 NC_011060.1 1295810 1296397 D hypothetical protein 1295810..1296397 Pelodictyon phaeoclathratiforme BU-1 6462321 YP_002018127.1 CDS Ppha_1239 NC_011060.1 1296591 1297415 D hypothetical protein 1296591..1297415 Pelodictyon phaeoclathratiforme BU-1 6463307 YP_002018128.1 CDS Ppha_1240 NC_011060.1 1297437 1297697 D hypothetical protein 1297437..1297697 Pelodictyon phaeoclathratiforme BU-1 6463247 YP_002018129.1 CDS Ppha_1241 NC_011060.1 1298014 1302114 D PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3004 hypothetical protein protein; hypothetical protein 1298014..1302114 Pelodictyon phaeoclathratiforme BU-1 6463789 YP_002018130.1 CDS Ppha_1242 NC_011060.1 1302220 1302474 D KEGG: cph:Cpha266_2190 hypothetical protein; hypothetical protein 1302220..1302474 Pelodictyon phaeoclathratiforme BU-1 6463785 YP_002018131.1 CDS Ppha_1243 NC_011060.1 1302471 1303532 D KEGG: cph:Cpha266_2189 hypothetical protein; hypothetical protein 1302471..1303532 Pelodictyon phaeoclathratiforme BU-1 6463784 YP_002018132.1 CDS Ppha_1244 NC_011060.1 1303762 1304847 D PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: pvi:Cvib_0620 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1303762..1304847 Pelodictyon phaeoclathratiforme BU-1 6463782 YP_002018133.1 CDS Ppha_1245 NC_011060.1 1305353 1306594 D PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase 1305353..1306594 Pelodictyon phaeoclathratiforme BU-1 6463781 YP_002018134.1 CDS Ppha_1247 NC_011060.1 1307021 1307902 D PFAM: filamentation induced by cAMP protein Fic; KEGG: hsm:HSM_1618 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 1307021..1307902 Pelodictyon phaeoclathratiforme BU-1 6463773 YP_002018135.1 CDS Ppha_1248 NC_011060.1 1308125 1309135 R KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein complement(1308125..1309135) Pelodictyon phaeoclathratiforme BU-1 6463772 YP_002018136.1 CDS Ppha_1252 NC_011060.1 1311548 1312534 D KEGG: hwa:HQ1527A methylglyoxal synthase; Methylglyoxal synthase-like protein 1311548..1312534 Pelodictyon phaeoclathratiforme BU-1 6463766 YP_002018137.1 CDS Ppha_1253 NC_011060.1 1312949 1315831 D PFAM: WD-40 repeat protein; KEGG: dar:Daro_3599 WD-40 repeat; WD-40 repeat-containing protein 1312949..1315831 Pelodictyon phaeoclathratiforme BU-1 6463764 YP_002018138.1 CDS Ppha_1255 NC_011060.1 1316711 1316932 D KEGG: cph:Cpha266_2190 hypothetical protein; hypothetical protein 1316711..1316932 Pelodictyon phaeoclathratiforme BU-1 6463760 YP_002018139.1 CDS Ppha_1257 NC_011060.1 1317695 1318669 R KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein complement(1317695..1318669) Pelodictyon phaeoclathratiforme BU-1 6463756 YP_002018140.1 CDS Ppha_1258 NC_011060.1 1319085 1319732 D PFAM: protein of unknown function DUF477; KEGG: tde:TDE2528 hypothetical protein; hypothetical protein 1319085..1319732 Pelodictyon phaeoclathratiforme BU-1 6463755 YP_002018141.1 CDS Ppha_1259 NC_011060.1 1319729 1320676 D PFAM: protein of unknown function DUF477; KEGG: rpa:RPA1574 DUF477; hypothetical protein 1319729..1320676 Pelodictyon phaeoclathratiforme BU-1 6463754 YP_002018142.1 CDS Ppha_1260 NC_011060.1 1320753 1321556 R KEGG: cte:CT1305 hypothetical protein; hypothetical protein complement(1320753..1321556) Pelodictyon phaeoclathratiforme BU-1 6463753 YP_002018143.1 CDS Ppha_1261 NC_011060.1 1321751 1322365 R PFAM: methyltransferase; KEGG: cph:Cpha266_1584 methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(1321751..1322365) Pelodictyon phaeoclathratiforme BU-1 6463752 YP_002018144.1 CDS Ppha_1262 NC_011060.1 1323163 1325118 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cch:Cag_1014 TonB-dependent receptor-related protein; TonB-dependent receptor 1323163..1325118 Pelodictyon phaeoclathratiforme BU-1 6463749 YP_002018145.1 CDS Ppha_1263 NC_011060.1 1325206 1325865 D TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: cph:Cpha266_1116 cob(II)yrinic acid a,c-diamide reductase; cob(II)yrinic acid a,c-diamide reductase 1325206..1325865 Pelodictyon phaeoclathratiforme BU-1 6463746 YP_002018146.1 CDS Ppha_1264 NC_011060.1 1325859 1327370 D catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1325859..1327370 Pelodictyon phaeoclathratiforme BU-1 6463743 YP_002018147.1 CDS Ppha_1265 NC_011060.1 1327367 1328449 D TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: cch:Cag_1011 L-threonine-O-3-phosphate decarboxylase; L-threonine-O-3-phosphate decarboxylase 1327367..1328449 Pelodictyon phaeoclathratiforme BU-1 6463748 YP_002018148.1 CDS cobD NC_011060.1 1328457 1329416 D CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1328457..1329416 Pelodictyon phaeoclathratiforme BU-1 6463741 YP_002018149.1 CDS Ppha_1267 NC_011060.1 1329438 1329968 D TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cph:Cpha266_1120 cob(I)yrinic acid a,c-diamide adenosyltransferase; cob(I)alamin adenosyltransferase 1329438..1329968 Pelodictyon phaeoclathratiforme BU-1 6463737 YP_002018150.1 CDS Ppha_1268 NC_011060.1 1329968 1331005 D PFAM: transport system permease; KEGG: cch:Cag_0754 FecCD transport family protein; transport system permease 1329968..1331005 Pelodictyon phaeoclathratiforme BU-1 6463735 YP_002018151.1 CDS Ppha_1269 NC_011060.1 1331007 1332272 D PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1079 ATPase; ABC transporter-like protein 1331007..1332272 Pelodictyon phaeoclathratiforme BU-1 6463732 YP_002018152.1 CDS Ppha_1270 NC_011060.1 1332278 1333084 D PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cch:Cag_1076 hypothetical protein; xylose isomerase domain-containing protein 1332278..1333084 Pelodictyon phaeoclathratiforme BU-1 6463728 YP_002018153.1 CDS Ppha_1271 NC_011060.1 1333151 1333369 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: rms:RMA_0924 antitoxin of toxin-antitoxin; DNA-binding domain-containing protein 1333151..1333369 Pelodictyon phaeoclathratiforme BU-1 6463726 YP_002018154.1 CDS Ppha_1272 NC_011060.1 1333359 1333619 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1376 addiction module toxin, RelE/StbE family; RelE/StbE family addiction module toxin 1333359..1333619 Pelodictyon phaeoclathratiforme BU-1 6463724 YP_002018155.1 CDS Ppha_1273 NC_011060.1 1333633 1334826 D PFAM: iron-containing alcohol dehydrogenase; KEGG: cch:Cag_0888 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase 1333633..1334826 Pelodictyon phaeoclathratiforme BU-1 6463721 YP_002018156.1 CDS Ppha_1274 NC_011060.1 1334836 1335291 R SMART: nuclear protein SET; KEGG: plt:Plut_1126 nuclear protein SET; nuclear protein SET complement(1334836..1335291) Pelodictyon phaeoclathratiforme BU-1 6463718 YP_002018157.1 CDS Ppha_1275 NC_011060.1 1335516 1335854 D KEGG: cch:Cag_0867 hypothetical protein; hypothetical protein 1335516..1335854 Pelodictyon phaeoclathratiforme BU-1 6463717 YP_002018158.1 CDS Ppha_1276 NC_011060.1 1335981 1336229 D TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1078 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 1335981..1336229 Pelodictyon phaeoclathratiforme BU-1 6463714 YP_002018159.1 CDS Ppha_1277 NC_011060.1 1336226 1336627 D KEGG: cch:Cag_1077 hypothetical protein; hypothetical protein 1336226..1336627 Pelodictyon phaeoclathratiforme BU-1 6463712 YP_002018160.1 CDS Ppha_1278 NC_011060.1 1336790 1337185 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: wsu:WS0422 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase 1336790..1337185 Pelodictyon phaeoclathratiforme BU-1 6463710 YP_002018161.1 CDS Ppha_1279 NC_011060.1 1337283 1338044 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1509 ABC transporter related; ABC transporter-like protein 1337283..1338044 Pelodictyon phaeoclathratiforme BU-1 6463709 YP_002018162.1 CDS Ppha_1280 NC_011060.1 1338054 1340417 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1508 protein of unknown function DUF214; hypothetical protein 1338054..1340417 Pelodictyon phaeoclathratiforme BU-1 6463707 YP_002018163.1 CDS Ppha_1281 NC_011060.1 1340421 1341584 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_1507 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1340421..1341584 Pelodictyon phaeoclathratiforme BU-1 6463704 YP_002018164.1 CDS Ppha_1282 NC_011060.1 1341636 1343009 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: plt:Plut_1122 hypothetical protein; hypothetical protein 1341636..1343009 Pelodictyon phaeoclathratiforme BU-1 6463703 YP_002018165.1 CDS Ppha_1283 NC_011060.1 1343058 1343993 R KEGG: cph:Cpha266_1560 hypothetical protein; hypothetical protein complement(1343058..1343993) Pelodictyon phaeoclathratiforme BU-1 6463701 YP_002018166.1 CDS Ppha_1284 NC_011060.1 1344310 1344825 R KEGG: cph:Cpha266_1758 hypothetical protein; hypothetical protein complement(1344310..1344825) Pelodictyon phaeoclathratiforme BU-1 6463700 YP_002018167.1 CDS Ppha_1285 NC_011060.1 1344997 1347801 R KEGG: cph:Cpha266_1757 hypothetical protein; hypothetical protein complement(1344997..1347801) Pelodictyon phaeoclathratiforme BU-1 6463698 YP_002018168.1 CDS Ppha_1286 NC_011060.1 1347985 1348491 R KEGG: cph:Cpha266_1753 YapH protein; YapH protein complement(1347985..1348491) Pelodictyon phaeoclathratiforme BU-1 6463697 YP_002018169.1 CDS Ppha_1287 NC_011060.1 1348980 1349855 R KEGG: cph:Cpha266_1756 hypothetical protein; hypothetical protein complement(1348980..1349855) Pelodictyon phaeoclathratiforme BU-1 6463696 YP_002018170.1 CDS Ppha_1288 NC_011060.1 1350106 1350633 R KEGG: cph:Cpha266_1753 YapH protein; YapH protein complement(1350106..1350633) Pelodictyon phaeoclathratiforme BU-1 6463695 YP_002018171.1 CDS Ppha_1289 NC_011060.1 1350864 1351100 D KEGG: cph:Cpha266_2339 transposase, IS4 family protein; transposase, IS4 family protein 1350864..1351100 Pelodictyon phaeoclathratiforme BU-1 6463693 YP_002018172.1 CDS Ppha_1290 NC_011060.1 1351078 1351332 D KEGG: amt:Amet_3130 transposase, IS4 family protein; transposase, IS4 family protein 1351078..1351332 Pelodictyon phaeoclathratiforme BU-1 6463692 YP_002018173.1 CDS Ppha_1291 NC_011060.1 1351391 1351834 D PFAM: transposase IS200-family protein; KEGG: amr:AM1_C0253 transposase, IS200-family; transposase IS200-family protein 1351391..1351834 Pelodictyon phaeoclathratiforme BU-1 6463688 YP_002018174.1 CDS Ppha_1292 NC_011060.1 1352006 1352506 R KEGG: sal:Sala_2858 hypothetical protein; hypothetical protein complement(1352006..1352506) Pelodictyon phaeoclathratiforme BU-1 6463687 YP_002018175.1 CDS Ppha_1293 NC_011060.1 1353054 1353590 D PFAM: cobalbumin biosynthesis protein; KEGG: cch:Cag_0846 cobalamin biosynthesis protein CobP; adenosylcobinamide-phosphate guanylyltransferase 1353054..1353590 Pelodictyon phaeoclathratiforme BU-1 6463686 YP_002018176.1 CDS cobT NC_011060.1 1353642 1354706 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1353642..1354706 Pelodictyon phaeoclathratiforme BU-1 6463680 YP_002018177.1 CDS Ppha_1295 NC_011060.1 1354710 1355474 D TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cch:Cag_1057 cobalamin-5-phosphate synthase CobS; cobalamin 5'-phosphate synthase 1354710..1355474 Pelodictyon phaeoclathratiforme BU-1 6463685 YP_002018178.1 CDS Ppha_1296 NC_011060.1 1355504 1356196 R PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2593 metallophosphoesterase; metallophosphoesterase complement(1355504..1356196) Pelodictyon phaeoclathratiforme BU-1 6461771 YP_002018179.1 CDS Ppha_1297 NC_011060.1 1356311 1356817 R KEGG: cch:Cag_1042 hypothetical protein; hypothetical protein complement(1356311..1356817) Pelodictyon phaeoclathratiforme BU-1 6462492 YP_002018180.1 CDS Ppha_1298 NC_011060.1 1357091 1358419 D KEGG: dol:Dole_3264 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1357091..1358419 Pelodictyon phaeoclathratiforme BU-1 6461870 YP_002018181.1 CDS Ppha_1299 NC_011060.1 1358459 1358824 R KEGG: cph:Cpha266_0521 hypothetical protein; hypothetical protein complement(1358459..1358824) Pelodictyon phaeoclathratiforme BU-1 6461890 YP_002018182.1 CDS Ppha_1300 NC_011060.1 1358879 1361194 R PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3497 peptidase-like; hypothetical protein complement(1358879..1361194) Pelodictyon phaeoclathratiforme BU-1 6462343 YP_002018183.1 CDS Ppha_1301 NC_011060.1 1361416 1363017 D KEGG: cch:Cag_1430 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase 1361416..1363017 Pelodictyon phaeoclathratiforme BU-1 6461225 YP_002018184.1 CDS Ppha_1302 NC_011060.1 1363036 1363851 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cph:Cpha266_1256 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1363036..1363851) Pelodictyon phaeoclathratiforme BU-1 6462408 YP_002018185.1 CDS Ppha_1303 NC_011060.1 1363899 1364912 R KEGG: cch:Cag_1032 hydrogenase/sulfur reductase, beta subunit; hydrogenase/sulfur reductase subunit beta complement(1363899..1364912) Pelodictyon phaeoclathratiforme BU-1 6461869 YP_002018186.1 CDS Ppha_1304 NC_011060.1 1364926 1365756 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_1258 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1364926..1365756) Pelodictyon phaeoclathratiforme BU-1 6462415 YP_002018187.1 CDS Ppha_1305 NC_011060.1 1365769 1366218 R PFAM: methyl-viologen-reducing hydrogenase delta subunit; KEGG: cph:Cpha266_1259 methyl-viologen-reducing hydrogenase, delta subunit; methyl-viologen-reducing hydrogenase subunit delta complement(1365769..1366218) Pelodictyon phaeoclathratiforme BU-1 6461093 YP_002018188.1 CDS Ppha_1306 NC_011060.1 1366271 1368241 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_1260 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(1366271..1368241) Pelodictyon phaeoclathratiforme BU-1 6462509 YP_002018189.1 CDS Ppha_1307 NC_011060.1 1368344 1369837 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cch:Cag_1028 heterodisulfide reductase, subunit C/succinate dehydrogenase, subunit C; CoB--CoM heterodisulfide reductase complement(1368344..1369837) Pelodictyon phaeoclathratiforme BU-1 6462350 YP_002018190.1 CDS Ppha_1308 NC_011060.1 1370181 1371383 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1370181..1371383 Pelodictyon phaeoclathratiforme BU-1 6460997 YP_002018191.1 CDS Ppha_1309 NC_011060.1 1371465 1373051 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: cch:Cag_1020 YjeF-related protein-like; carbohydrate kinase complement(1371465..1373051) Pelodictyon phaeoclathratiforme BU-1 6461832 YP_002018192.1 CDS Ppha_1310 NC_011060.1 1373084 1375366 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(1373084..1375366) Pelodictyon phaeoclathratiforme BU-1 6462044 YP_002018193.1 CDS secA NC_011060.1 1375394 1378468 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(1375394..1378468) Pelodictyon phaeoclathratiforme BU-1 6461979 YP_002018194.1 CDS Ppha_1312 NC_011060.1 1378678 1379565 R PFAM: 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cph:Cpha266_1679 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein complement(1378678..1379565) Pelodictyon phaeoclathratiforme BU-1 6462167 YP_002018195.1 CDS Ppha_1313 NC_011060.1 1379630 1380568 R PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cph:Cpha266_1267 HhH-GPD family protein; 8-oxoguanine DNA glycosylase complement(1379630..1380568) Pelodictyon phaeoclathratiforme BU-1 6461359 YP_002018196.1 CDS Ppha_1314 NC_011060.1 1381058 1381768 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: cph:Cpha266_1275 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1381058..1381768) Pelodictyon phaeoclathratiforme BU-1 6462551 YP_002018197.1 CDS Ppha_1315 NC_011060.1 1381891 1382451 R KEGG: cch:Cag_1069 hypothetical protein; hypothetical protein complement(1381891..1382451) Pelodictyon phaeoclathratiforme BU-1 6462545 YP_002018198.1 CDS Ppha_1316 NC_011060.1 1382484 1383368 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1382484..1383368) Pelodictyon phaeoclathratiforme BU-1 6461192 YP_002018199.1 CDS Ppha_1317 NC_011060.1 1383566 1383841 R PFAM: histone family protein DNA-binding protein; KEGG: cch:Cag_0362 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(1383566..1383841) Pelodictyon phaeoclathratiforme BU-1 6461861 YP_002018200.1 CDS Ppha_1318 NC_011060.1 1384254 1386296 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: plt:Plut_0343 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 1384254..1386296 Pelodictyon phaeoclathratiforme BU-1 6462448 YP_002018201.1 CDS Ppha_1319 NC_011060.1 1386331 1387689 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: plt:Plut_0344 two component transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 1386331..1387689 Pelodictyon phaeoclathratiforme BU-1 6461976 YP_002018202.1 CDS Ppha_1320 NC_011060.1 1387945 1388274 D KEGG: pvi:Cvib_0916 hypothetical protein; hypothetical protein 1387945..1388274 Pelodictyon phaeoclathratiforme BU-1 6461667 YP_002018203.1 CDS Ppha_1321 NC_011060.1 1388356 1388718 D KEGG: plt:Plut_0346 hypothetical protein; hypothetical protein 1388356..1388718 Pelodictyon phaeoclathratiforme BU-1 6462464 YP_002018204.1 CDS Ppha_1322 NC_011060.1 1388763 1389173 D KEGG: cch:Cag_0916 C-type cytochrome; hypothetical protein 1388763..1389173 Pelodictyon phaeoclathratiforme BU-1 6462572 YP_002018205.1 CDS Ppha_1323 NC_011060.1 1389246 1390079 D KEGG: cph:Cpha266_1270 hypothetical protein; hypothetical protein 1389246..1390079 Pelodictyon phaeoclathratiforme BU-1 6462476 YP_002018206.1 CDS Ppha_1324 NC_011060.1 1390225 1390593 R PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cph:Cpha266_1457 dinitrogenase iron-molybdenum cofactor biosynthesis; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(1390225..1390593) Pelodictyon phaeoclathratiforme BU-1 6461745 YP_002018207.1 CDS Ppha_1325 NC_011060.1 1390948 1391559 D PFAM: regulatory protein TetR; KEGG: cph:Cpha266_1240 transcriptional regulator, TetR family; TetR family transcriptional regulator 1390948..1391559 Pelodictyon phaeoclathratiforme BU-1 6461942 YP_002018208.1 CDS Ppha_1326 NC_011060.1 1391556 1392752 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1241 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1391556..1392752 Pelodictyon phaeoclathratiforme BU-1 6462601 YP_002018209.1 CDS Ppha_1327 NC_011060.1 1392749 1393951 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1242 protein of unknown function DUF214; hypothetical protein 1392749..1393951 Pelodictyon phaeoclathratiforme BU-1 6461698 YP_002018210.1 CDS Ppha_1328 NC_011060.1 1393953 1394687 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1243 ABC transporter related; ABC transporter-like protein 1393953..1394687 Pelodictyon phaeoclathratiforme BU-1 6462428 YP_002018211.1 CDS moaC NC_011060.1 1394982 1395923 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA 1394982..1395923 Pelodictyon phaeoclathratiforme BU-1 6460950 YP_002018212.1 CDS Ppha_1330 NC_011060.1 1395920 1397143 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cch:Cag_1064 molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 1395920..1397143 Pelodictyon phaeoclathratiforme BU-1 6461898 YP_002018213.1 CDS Ppha_1331 NC_011060.1 1397148 1398242 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway; bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA 1397148..1398242 Pelodictyon phaeoclathratiforme BU-1 6461291 YP_002018214.1 CDS Ppha_1332 NC_011060.1 1398323 1398727 R KEGG: cph:Cpha266_2508 hypothetical protein; hypothetical protein complement(1398323..1398727) Pelodictyon phaeoclathratiforme BU-1 6461129 YP_002018215.1 CDS Ppha_1334 NC_011060.1 1399147 1399629 R KEGG: cph:Cpha266_0683 hypothetical protein; hypothetical protein complement(1399147..1399629) Pelodictyon phaeoclathratiforme BU-1 6460975 YP_002018216.1 CDS Ppha_1335 NC_011060.1 1400201 1402987 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cte:CT0496 polysulfide reductase, subunit A; molybdopterin oxidoreductase 1400201..1402987 Pelodictyon phaeoclathratiforme BU-1 6461139 YP_002018217.1 CDS Ppha_1336 NC_011060.1 1403013 1403612 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0495 polysulfide reductase, subunit B; 4Fe-4S ferredoxin 1403013..1403612 Pelodictyon phaeoclathratiforme BU-1 6461441 YP_002018218.1 CDS Ppha_1337 NC_011060.1 1403630 1404544 D PFAM: Polysulphide reductase NrfD; KEGG: pvi:Cvib_1687 polysulphide reductase, NrfD; polysulfide reductase NrfD 1403630..1404544 Pelodictyon phaeoclathratiforme BU-1 6462579 YP_002018219.1 CDS Ppha_1338 NC_011060.1 1404590 1405171 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: cte:CT0493 hypothetical protein; cytoplasmic chaperone TorD family protein 1404590..1405171 Pelodictyon phaeoclathratiforme BU-1 6461974 YP_002018220.1 CDS Ppha_1339 NC_011060.1 1405421 1406401 D KEGG: cph:Cpha266_0734 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: radical SAM protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1405421..1406401 Pelodictyon phaeoclathratiforme BU-1 6461947 YP_002018221.1 CDS Ppha_1340 NC_011060.1 1406420 1406860 R PFAM: MOSC domain containing protein; KEGG: cph:Cpha266_0733 MOSC domain containing protein; MOSC domain-containing protein complement(1406420..1406860) Pelodictyon phaeoclathratiforme BU-1 6461443 YP_002018222.1 CDS Ppha_1341 NC_011060.1 1407242 1407643 D PFAM: OsmC family protein; KEGG: cph:Cpha266_1001 OsmC family protein; OsmC family protein 1407242..1407643 Pelodictyon phaeoclathratiforme BU-1 6462314 YP_002018223.1 CDS Ppha_1342 NC_011060.1 1407754 1407927 D KEGG: cte:CT1087 sulfide-quinone reductase; sulfide-quinone reductase 1407754..1407927 Pelodictyon phaeoclathratiforme BU-1 6461354 YP_002018224.1 CDS Ppha_1343 NC_011060.1 1407924 1408397 D PFAM: protein of unknown function DUF134; KEGG: cch:Cag_0886 hypothetical protein; hypothetical protein 1407924..1408397 Pelodictyon phaeoclathratiforme BU-1 6462301 YP_002018225.1 CDS Ppha_1344 NC_011060.1 1408447 1409103 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1238 methyltransferase type 11; type 11 methyltransferase 1408447..1409103 Pelodictyon phaeoclathratiforme BU-1 6461658 YP_002018226.1 CDS Ppha_1345 NC_011060.1 1409176 1409850 D KEGG: cph:Cpha266_2565 hypothetical protein; hypothetical protein 1409176..1409850 Pelodictyon phaeoclathratiforme BU-1 6461161 YP_002018227.1 CDS Ppha_1346 NC_011060.1 1409942 1410205 D KEGG: cte:CT0982 hypothetical protein; hypothetical protein 1409942..1410205 Pelodictyon phaeoclathratiforme BU-1 6461317 YP_002018228.1 CDS Ppha_1347 NC_011060.1 1410324 1411778 D KEGG: cch:Cag_0882 sulfide-quinone reductase; sulfide-quinone reductase 1410324..1411778 Pelodictyon phaeoclathratiforme BU-1 6461740 YP_002018229.1 CDS Ppha_1348 NC_011060.1 1411818 1411976 D KEGG: cch:Cag_0881 hypothetical protein; hypothetical protein 1411818..1411976 Pelodictyon phaeoclathratiforme BU-1 6461756 YP_002018230.1 CDS Ppha_1349 NC_011060.1 1411981 1412571 R PFAM: protein of unknown function DUF218; KEGG: cte:CT1146 hypothetical protein; hypothetical protein complement(1411981..1412571) Pelodictyon phaeoclathratiforme BU-1 6461397 YP_002018231.1 CDS Ppha_1350 NC_011060.1 1412952 1415051 D KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: GAF domain protein; multi-sensor hybrid histidine kinase 1412952..1415051 Pelodictyon phaeoclathratiforme BU-1 6462506 YP_002018232.1 CDS Ppha_1351 NC_011060.1 1415114 1415962 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_0383 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 1415114..1415962 Pelodictyon phaeoclathratiforme BU-1 6461385 YP_002018233.1 CDS Ppha_1352 NC_011060.1 1416126 1417169 D PFAM: basic membrane lipoprotein; KEGG: cph:Cpha266_1340 basic membrane lipoprotein; basic membrane lipoprotein 1416126..1417169 Pelodictyon phaeoclathratiforme BU-1 6461448 YP_002018234.1 CDS Ppha_1353 NC_011060.1 1417259 1418254 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_0793 3-beta hydroxysteroid dehydrogenase/isomerase family protein; NAD-dependent epimerase/dehydratase 1417259..1418254 Pelodictyon phaeoclathratiforme BU-1 6461298 YP_002018235.1 CDS Ppha_1354 NC_011060.1 1418297 1419085 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_1338 methyltransferase type 11; type 11 methyltransferase complement(1418297..1419085) Pelodictyon phaeoclathratiforme BU-1 6462595 YP_002018236.1 CDS Ppha_1355 NC_011060.1 1419158 1419352 R KEGG: cch:Cag_0897 hypothetical protein; hypothetical protein complement(1419158..1419352) Pelodictyon phaeoclathratiforme BU-1 6462197 YP_002018237.1 CDS pyrC NC_011060.1 1419467 1420795 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(1419467..1420795) Pelodictyon phaeoclathratiforme BU-1 6461707 YP_002018238.1 CDS Ppha_1357 NC_011060.1 1421086 1421682 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cch:Cag_0899 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 1421086..1421682 Pelodictyon phaeoclathratiforme BU-1 6461496 YP_002018239.1 CDS Ppha_1358 NC_011060.1 1421686 1423812 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1421686..1423812 Pelodictyon phaeoclathratiforme BU-1 6461294 YP_002018240.1 CDS Ppha_1359 NC_011060.1 1423831 1424265 D KEGG: cch:Cag_0901 ribose/galactose isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 1423831..1424265 Pelodictyon phaeoclathratiforme BU-1 6461627 YP_002018241.1 CDS Ppha_1360 NC_011060.1 1424256 1424945 D PFAM: CBS domain containing protein; KEGG: cph:Cpha266_1331 CBS domain containing protein; signal transduction protein with CBS domains 1424256..1424945 Pelodictyon phaeoclathratiforme BU-1 6462220 YP_002018242.1 CDS Ppha_1361 NC_011060.1 1425072 1426289 D KEGG: cph:Cpha266_1330 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 1425072..1426289 Pelodictyon phaeoclathratiforme BU-1 6462445 YP_002018243.1 CDS Ppha_1362 NC_011060.1 1426374 1427348 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(1426374..1427348) Pelodictyon phaeoclathratiforme BU-1 6461816 YP_002018244.1 CDS Ppha_1363 NC_011060.1 1427510 1429576 D KEGG: cph:Cpha266_1304 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1427510..1429576 Pelodictyon phaeoclathratiforme BU-1 6462066 YP_002018245.1 CDS Ppha_1365 NC_011060.1 1429737 1430276 D KEGG: xau:Xaut_0355 phospholipid N-methyltransferase; phospholipid N-methyltransferase 1429737..1430276 Pelodictyon phaeoclathratiforme BU-1 6463677 YP_002018246.1 CDS Ppha_1366 NC_011060.1 1430297 1432360 D KEGG: cph:Cpha266_1304 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1430297..1432360 Pelodictyon phaeoclathratiforme BU-1 6463669 YP_002018247.1 CDS Ppha_1367 NC_011060.1 1432357 1433739 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(1432357..1433739) Pelodictyon phaeoclathratiforme BU-1 6463668 YP_002018248.1 CDS Ppha_1368 NC_011060.1 1433910 1434362 D PFAM: peptidase S24 and S26 domain protein; KEGG: pvi:Cvib_0128 prophage repressor; peptidase S24 and S26 domain-containing protein 1433910..1434362 Pelodictyon phaeoclathratiforme BU-1 6463666 YP_002018249.1 CDS Ppha_1369 NC_011060.1 1434378 1435658 D PFAM: UMUC domain protein DNA-repair protein; KEGG: cph:Cpha266_1031 DNA-directed DNA polymerase; DNA-directed DNA polymerase 1434378..1435658 Pelodictyon phaeoclathratiforme BU-1 6463665 YP_002018250.1 CDS Ppha_1370 NC_011060.1 1435773 1436168 R TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: cph:Cpha266_2176 death-on-curing family protein; death-on-curing family protein complement(1435773..1436168) Pelodictyon phaeoclathratiforme BU-1 6463663 YP_002018251.1 CDS Ppha_1371 NC_011060.1 1436165 1436386 R TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2175 transcriptional regulator/antitoxin, MazE; transcriptional regulator/antitoxin MazE complement(1436165..1436386) Pelodictyon phaeoclathratiforme BU-1 6463660 YP_002018252.1 CDS Ppha_1372 NC_011060.1 1436584 1438707 R KEGG: pvi:Cvib_0831 hypothetical protein; hypothetical protein complement(1436584..1438707) Pelodictyon phaeoclathratiforme BU-1 6463659 YP_002018253.1 CDS Ppha_1373 NC_011060.1 1438728 1439075 R PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1552 uncharacterised conserved protein UCP025560; hypothetical protein complement(1438728..1439075) Pelodictyon phaeoclathratiforme BU-1 6463657 YP_002018254.1 CDS Ppha_1374 NC_011060.1 1439093 1439296 R KEGG: cph:Cpha266_1551 hypothetical protein; hypothetical protein complement(1439093..1439296) Pelodictyon phaeoclathratiforme BU-1 6463656 YP_002018255.1 CDS Ppha_1375 NC_011060.1 1439539 1441083 D PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1326 pentapeptide repeat protein; pentapeptide repeat-containing protein 1439539..1441083 Pelodictyon phaeoclathratiforme BU-1 6463655 YP_002018256.1 CDS Ppha_1376 NC_011060.1 1441298 1441579 D PFAM: plasmid maintenance system killer; KEGG: chu:CHU_0643 hypothetical protein; plasmid maintenance system killer protein 1441298..1441579 Pelodictyon phaeoclathratiforme BU-1 6463654 YP_002018257.1 CDS Ppha_1377 NC_011060.1 1441581 1441880 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: chu:CHU_0642 hypothetical protein; XRE family plasmid maintenance system antidote protein 1441581..1441880 Pelodictyon phaeoclathratiforme BU-1 6463653 YP_002018258.1 CDS Ppha_1378 NC_011060.1 1441966 1443168 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(1441966..1443168) Pelodictyon phaeoclathratiforme BU-1 6463650 YP_002018259.1 CDS Ppha_1379 NC_011060.1 1443185 1443631 R PFAM: arginine repressor; KEGG: cch:Cag_0776 arginine repressor; arginine repressor ArgR complement(1443185..1443631) Pelodictyon phaeoclathratiforme BU-1 6463645 YP_002018260.1 CDS Ppha_1380 NC_011060.1 1443646 1444662 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1443646..1444662) Pelodictyon phaeoclathratiforme BU-1 6461288 YP_002018261.1 CDS Ppha_1381 NC_011060.1 1444667 1445581 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(1444667..1445581) Pelodictyon phaeoclathratiforme BU-1 6463641 YP_002018262.1 CDS argJ NC_011060.1 1445621 1446904 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(1445621..1446904) Pelodictyon phaeoclathratiforme BU-1 6463638 YP_002018263.1 CDS argC NC_011060.1 1446935 1447939 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase complement(1446935..1447939) Pelodictyon phaeoclathratiforme BU-1 6463636 YP_002018264.1 CDS Ppha_1384 NC_011060.1 1448076 1448210 D hypothetical protein 1448076..1448210 Pelodictyon phaeoclathratiforme BU-1 6463634 YP_002018265.1 CDS Ppha_1385 NC_011060.1 1448207 1449109 D KEGG: cph:Cpha266_1319 phosphate-binding protein; phosphate-binding protein 1448207..1449109 Pelodictyon phaeoclathratiforme BU-1 6463633 YP_002018266.1 CDS Ppha_1386 NC_011060.1 1449115 1450416 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pvi:Cvib_0875 diguanylate cyclase; diguanylate cyclase 1449115..1450416 Pelodictyon phaeoclathratiforme BU-1 6463630 YP_002018267.1 CDS Ppha_1387 NC_011060.1 1450406 1451677 D PFAM: protein of unknown function DUF214; KEGG: plt:Plut_1052 hypothetical protein; hypothetical protein 1450406..1451677 Pelodictyon phaeoclathratiforme BU-1 6463629 YP_002018268.1 CDS Ppha_1388 NC_011060.1 1451700 1452950 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1316 protein of unknown function DUF214; hypothetical protein 1451700..1452950 Pelodictyon phaeoclathratiforme BU-1 6463628 YP_002018269.1 CDS Ppha_1389 NC_011060.1 1452971 1453609 R PFAM: GCN5-related N-acetyltransferase; Rubredoxin-type Fe(Cys)4 protein; KEGG: cph:Cpha266_1314 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1452971..1453609) Pelodictyon phaeoclathratiforme BU-1 6463627 YP_002018270.1 CDS Ppha_1390 NC_011060.1 1453860 1454510 D PFAM: protein of unknown function UPF0016; KEGG: cph:Cpha266_1312 protein of unknown function UPF0016; hypothetical protein 1453860..1454510 Pelodictyon phaeoclathratiforme BU-1 6463626 YP_002018271.1 CDS Ppha_1391 NC_011060.1 1454609 1455463 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(1454609..1455463) Pelodictyon phaeoclathratiforme BU-1 6463625 YP_002018272.1 CDS Ppha_1392 NC_011060.1 1455572 1456768 D PFAM: ATP-grasp domain protein; KEGG: cph:Cpha266_1307 ATP citrate lyase subunit 1; ATP-grasp domain-containing protein 1455572..1456768 Pelodictyon phaeoclathratiforme BU-1 6463624 YP_002018273.1 CDS Ppha_1393 NC_011060.1 1456829 1458661 D PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cph:Cpha266_1306 ATP citrate lyase subunit 2; ATP-citrate lyase/succinyl-CoA ligase 1456829..1458661 Pelodictyon phaeoclathratiforme BU-1 6463622 YP_002018274.1 CDS Ppha_1394 NC_011060.1 1459032 1459319 D PFAM: RNP-1 like RNA-binding protein; KEGG: cph:Cpha266_1273 RNP-1 like RNA-binding protein; RNP-1 like RNA-binding protein 1459032..1459319 Pelodictyon phaeoclathratiforme BU-1 6463621 YP_002018275.1 CDS Ppha_1395 NC_011060.1 1459514 1459702 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_0104 hypothetical protein; 4Fe-4S ferredoxin 1459514..1459702 Pelodictyon phaeoclathratiforme BU-1 6463623 YP_002018276.1 CDS Ppha_1396 NC_011060.1 1460577 1461011 R PFAM: protein of unknown function DUF86; KEGG: ppd:Ppro_2947 protein of unknown function DUF86; hypothetical protein complement(1460577..1461011) Pelodictyon phaeoclathratiforme BU-1 6463620 YP_002018277.1 CDS Ppha_1397 NC_011060.1 1461008 1461412 R PFAM: DNA polymerase beta domain protein region; KEGG: bcz:pE33L466_0269 possible nucleotidyltransferase; DNA polymerase beta domain-containing protein complement(1461008..1461412) Pelodictyon phaeoclathratiforme BU-1 6463619 YP_002018278.1 CDS Ppha_1398 NC_011060.1 1461549 1462259 D KEGG: cph:Cpha266_1287 hypothetical protein; hypothetical protein 1461549..1462259 Pelodictyon phaeoclathratiforme BU-1 6463618 YP_002018279.1 CDS Ppha_1399 NC_011060.1 1462500 1463135 D KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 1462500..1463135 Pelodictyon phaeoclathratiforme BU-1 6463617 YP_002018280.1 CDS Ppha_1400 NC_011060.1 1463250 1463501 R KEGG: cph:Cpha266_1286 hypothetical protein; hypothetical protein complement(1463250..1463501) Pelodictyon phaeoclathratiforme BU-1 6463616 YP_002018281.1 CDS Ppha_1401 NC_011060.1 1463520 1463876 R KEGG: pdi:BDI_2151 hypothetical protein; hypothetical protein complement(1463520..1463876) Pelodictyon phaeoclathratiforme BU-1 6463615 YP_002018282.1 CDS Ppha_1402 NC_011060.1 1464079 1464309 D KEGG: cph:Cpha266_1284 hypothetical protein; hypothetical protein 1464079..1464309 Pelodictyon phaeoclathratiforme BU-1 6463614 YP_002018283.1 CDS Ppha_1403 NC_011060.1 1464329 1464628 D KEGG: cph:Cpha266_1285 hypothetical protein; hypothetical protein 1464329..1464628 Pelodictyon phaeoclathratiforme BU-1 6463613 YP_002018284.1 CDS Ppha_1404 NC_011060.1 1464776 1465168 D KEGG: cph:Cpha266_1289 hypothetical protein; hypothetical protein 1464776..1465168 Pelodictyon phaeoclathratiforme BU-1 6463612 YP_002018285.1 CDS Ppha_1405 NC_011060.1 1465140 1465532 R KEGG: cph:Cpha266_1290 hypothetical protein; hypothetical protein complement(1465140..1465532) Pelodictyon phaeoclathratiforme BU-1 6463610 YP_002018286.1 CDS Ppha_1406 NC_011060.1 1465529 1466680 R KEGG: cph:Cpha266_1292 hypothetical protein; hypothetical protein complement(1465529..1466680) Pelodictyon phaeoclathratiforme BU-1 6463609 YP_002018287.1 CDS Ppha_1408 NC_011060.1 1467714 1468097 R PFAM: PilT protein domain protein; KEGG: ava:Ava_0767 PilT protein-like; PilT protein domain-containing protein complement(1467714..1468097) Pelodictyon phaeoclathratiforme BU-1 6463607 YP_002018288.1 CDS Ppha_1409 NC_011060.1 1468094 1468315 R KEGG: ava:Ava_4033 hypothetical protein; hypothetical protein complement(1468094..1468315) Pelodictyon phaeoclathratiforme BU-1 6463606 YP_002018289.1 CDS Ppha_1410 NC_011060.1 1468583 1469290 D KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 1468583..1469290 Pelodictyon phaeoclathratiforme BU-1 6463605 YP_002018290.1 CDS Ppha_1411 NC_011060.1 1469415 1470368 R KEGG: xau:Xaut_0217 hypothetical protein; hypothetical protein complement(1469415..1470368) Pelodictyon phaeoclathratiforme BU-1 6463602 YP_002018291.1 CDS Ppha_1413 NC_011060.1 1470657 1472137 D hypothetical protein join(1470657..1471127,1471127..1472137) Pelodictyon phaeoclathratiforme BU-1 6463600 YP_002018292.1 CDS Ppha_1414 NC_011060.1 1472340 1472609 R KEGG: pdi:BDI_2151 hypothetical protein; hypothetical protein complement(1472340..1472609) Pelodictyon phaeoclathratiforme BU-1 6463599 YP_002018293.1 CDS Ppha_1416 NC_011060.1 1473568 1474011 R PFAM: transposase IS200-family protein; KEGG: amr:AM1_C0253 transposase, IS200-family; transposase IS200-family protein complement(1473568..1474011) Pelodictyon phaeoclathratiforme BU-1 6463596 YP_002018294.1 CDS Ppha_1417 NC_011060.1 1474926 1475639 R KEGG: son:SO_4263 hypothetical protein; hypothetical protein complement(1474926..1475639) Pelodictyon phaeoclathratiforme BU-1 6463595 YP_002018295.1 CDS Ppha_1419 NC_011060.1 1476331 1478094 R hypothetical protein complement(1476331..1478094) Pelodictyon phaeoclathratiforme BU-1 6463591 YP_002018296.1 CDS Ppha_1420 NC_011060.1 1478210 1480639 R PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1708 hypothetical protein; hypothetical protein complement(1478210..1480639) Pelodictyon phaeoclathratiforme BU-1 6463590 YP_002018297.1 CDS Ppha_1421 NC_011060.1 1480845 1484912 R KEGG: dge:Dgeo_1545 type II DNA modification enzyme; type II DNA modification enzyme complement(1480845..1484912) Pelodictyon phaeoclathratiforme BU-1 6463589 YP_002018298.1 CDS Ppha_1422 NC_011060.1 1484909 1487785 R PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1301 helicase domain protein; helicase domain-containing protein complement(1484909..1487785) Pelodictyon phaeoclathratiforme BU-1 6463588 YP_002018299.1 CDS Ppha_1423 NC_011060.1 1487782 1492953 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1302 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(1487782..1492953) Pelodictyon phaeoclathratiforme BU-1 6463587 YP_002018300.1 CDS Ppha_1425 NC_011060.1 1493382 1495595 R KEGG: ppd:Ppro_1864 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; helicase, RecD/TraA family complement(1493382..1495595) Pelodictyon phaeoclathratiforme BU-1 6463586 YP_002018301.1 CDS Ppha_1426 NC_011060.1 1495585 1495893 R PFAM: histone family protein DNA-binding protein; KEGG: cph:Cpha266_0424 histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(1495585..1495893) Pelodictyon phaeoclathratiforme BU-1 6461578 YP_002018302.1 CDS Ppha_1427 NC_011060.1 1496075 1498579 R KEGG: plt:Plut_1093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase complement(1496075..1498579) Pelodictyon phaeoclathratiforme BU-1 6462367 YP_002018303.1 CDS Ppha_1428 NC_011060.1 1498696 1500558 R PFAM: AAA-4 family protein; KEGG: lpn:lpg2559 ATP-dependent DNA helicase; transcriptional regulator complement(1498696..1500558) Pelodictyon phaeoclathratiforme BU-1 6462471 YP_002018304.1 CDS Ppha_1430 NC_011060.1 1501819 1502139 D KEGG: cho:Chro.40191 hypothetical protein; hypothetical protein 1501819..1502139 Pelodictyon phaeoclathratiforme BU-1 6463583 YP_002018305.1 CDS Ppha_1431 NC_011060.1 1502248 1502685 R KEGG: cph:Cpha266_1359 hypothetical protein; hypothetical protein complement(1502248..1502685) Pelodictyon phaeoclathratiforme BU-1 6463582 YP_002018306.1 CDS Ppha_1432 NC_011060.1 1502841 1504571 R TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: cch:Cag_0770 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha complement(1502841..1504571) Pelodictyon phaeoclathratiforme BU-1 6463581 YP_002018307.1 CDS Ppha_1433 NC_011060.1 1504575 1508174 R TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: cch:Cag_0769 exodeoxyribonuclease V, beta subunit; exodeoxyribonuclease V subunit beta complement(1504575..1508174) Pelodictyon phaeoclathratiforme BU-1 6463580 YP_002018308.1 CDS Ppha_1434 NC_011060.1 1508171 1511377 R TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: cch:Cag_0763 exodeoxyribonuclease V, RecC subunit; exodeoxyribonuclease V subunit gamma complement(1508171..1511377) Pelodictyon phaeoclathratiforme BU-1 6461371 YP_002018309.1 CDS Ppha_1435 NC_011060.1 1511367 1512686 R KEGG: cph:Cpha266_1127 hypothetical protein; hypothetical protein complement(1511367..1512686) Pelodictyon phaeoclathratiforme BU-1 6463579 YP_002018310.1 CDS Ppha_1436 NC_011060.1 1512689 1514764 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1126 ATP-dependent DNA helicase RecQ; DEAD/DEAH box helicase complement(1512689..1514764) Pelodictyon phaeoclathratiforme BU-1 6463578 YP_002018311.1 CDS Ppha_1437 NC_011060.1 1515046 1515687 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1144 HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase complement(1515046..1515687) Pelodictyon phaeoclathratiforme BU-1 6463576 YP_002018312.1 CDS Ppha_1439 NC_011060.1 1516053 1516493 R PFAM: protein of unknown function DUF307; KEGG: mag:amb4030 predicted membrane protein; hypothetical protein complement(1516053..1516493) Pelodictyon phaeoclathratiforme BU-1 6463574 YP_002018313.1 CDS Ppha_1440 NC_011060.1 1516575 1517051 R KEGG: rba:RB11160 hypothetical protein; hypothetical protein complement(1516575..1517051) Pelodictyon phaeoclathratiforme BU-1 6463573 YP_002018314.1 CDS Ppha_1441 NC_011060.1 1517294 1517503 D PFAM: protein of unknown function UPF0150; KEGG: mar:MAE_44020 hypothetical protein; hypothetical protein 1517294..1517503 Pelodictyon phaeoclathratiforme BU-1 6463572 YP_002018315.1 CDS Ppha_1442 NC_011060.1 1517515 1518054 R KEGG: cph:Cpha266_1151 transcriptional regulator; transcriptional regulator complement(1517515..1518054) Pelodictyon phaeoclathratiforme BU-1 6463570 YP_002018316.1 CDS Ppha_1443 NC_011060.1 1518152 1518430 R TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: fjo:Fjoh_0231 addiction module toxin, Txe/YoeB family; Txe/YoeB family addiction module toxin complement(1518152..1518430) Pelodictyon phaeoclathratiforme BU-1 6463569 YP_002018317.1 CDS Ppha_1444 NC_011060.1 1518430 1518690 R KEGG: cch:Cag_1210 hypothetical protein; hypothetical protein complement(1518430..1518690) Pelodictyon phaeoclathratiforme BU-1 6463567 YP_002018318.1 CDS Ppha_1447 NC_011060.1 1519430 1520287 R KEGG: cph:Cpha266_1152 prophage antirepressor; prophage antirepressor complement(1519430..1520287) Pelodictyon phaeoclathratiforme BU-1 6463561 YP_002018319.1 CDS Ppha_1448 NC_011060.1 1520529 1522028 R PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0507 divergent AAA ATPase; transcriptional regulator complement(1520529..1522028) Pelodictyon phaeoclathratiforme BU-1 6463560 YP_002018320.1 CDS Ppha_1449 NC_011060.1 1522099 1522371 R KEGG: cph:Cpha266_1142 hypothetical protein; hypothetical protein complement(1522099..1522371) Pelodictyon phaeoclathratiforme BU-1 6463559 YP_002018321.1 CDS Ppha_1450 NC_011060.1 1522472 1523560 R KEGG: tcx:Tcr_0366 TIR; hypothetical protein complement(1522472..1523560) Pelodictyon phaeoclathratiforme BU-1 6463558 YP_002018322.1 CDS Ppha_1451 NC_011060.1 1523557 1523718 R hypothetical protein complement(1523557..1523718) Pelodictyon phaeoclathratiforme BU-1 6463557 YP_002018323.1 CDS Ppha_1452 NC_011060.1 1523718 1524896 R PFAM: restriction modification system DNA specificity domain; KEGG: cch:Cag_1526 restriction endonuclease S subunits-like; restriction modification system DNA specificity domain complement(1523718..1524896) Pelodictyon phaeoclathratiforme BU-1 6463556 YP_002018324.1 CDS Ppha_1453 NC_011060.1 1524893 1525084 R hypothetical protein complement(1524893..1525084) Pelodictyon phaeoclathratiforme BU-1 6463554 YP_002018325.1 CDS Ppha_1454 NC_011060.1 1525081 1526742 R PFAM: RNA methylase; N-6 DNA methylase; KEGG: cph:Cpha266_1130 N-6 DNA methylase; N-6 DNA methylase complement(1525081..1526742) Pelodictyon phaeoclathratiforme BU-1 6463553 YP_002018326.1 CDS Ppha_1455 NC_011060.1 1526746 1528134 R PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1129 transcriptional regulator; transcriptional regulator complement(1526746..1528134) Pelodictyon phaeoclathratiforme BU-1 6463551 YP_002018327.1 CDS Ppha_1456 NC_011060.1 1528136 1530934 R PFAM: type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1128 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(1528136..1530934) Pelodictyon phaeoclathratiforme BU-1 6463550 YP_002018328.1 CDS Ppha_1458 NC_011060.1 1531323 1531877 R PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL; PEBP family protein complement(1531323..1531877) Pelodictyon phaeoclathratiforme BU-1 6463549 YP_002018329.1 CDS Ppha_1459 NC_011060.1 1532024 1535539 R PFAM: SMC domain protein; KEGG: cch:Cag_1092 hypothetical protein; SMC domain-containing protein complement(1532024..1535539) Pelodictyon phaeoclathratiforme BU-1 6463548 YP_002018330.1 CDS Ppha_1460 NC_011060.1 1535529 1536788 R PFAM: metallophosphoesterase; KEGG: cch:Cag_1093 exonuclease; metallophosphoesterase complement(1535529..1536788) Pelodictyon phaeoclathratiforme BU-1 6463547 YP_002018331.1 CDS Ppha_1461 NC_011060.1 1536862 1537836 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1536862..1537836) Pelodictyon phaeoclathratiforme BU-1 6463546 YP_002018332.1 CDS Ppha_1462 NC_011060.1 1538375 1541128 D KEGG: mth:MTH632 hypothetical protein; hypothetical protein 1538375..1541128 Pelodictyon phaeoclathratiforme BU-1 6463544 YP_002018333.1 CDS Ppha_1463 NC_011060.1 1541377 1543284 D KEGG: pin:Ping_0257 hypothetical protein; hypothetical protein 1541377..1543284 Pelodictyon phaeoclathratiforme BU-1 6463543 YP_002018334.1 CDS Ppha_1464 NC_011060.1 1543372 1545027 D KEGG: bxe:Bxe_C1257 hypothetical protein; hypothetical protein 1543372..1545027 Pelodictyon phaeoclathratiforme BU-1 6463542 YP_002018335.1 CDS Ppha_1466 NC_011060.1 1545622 1546245 R KEGG: mma:MM_3344 transposase; transposase complement(1545622..1546245) Pelodictyon phaeoclathratiforme BU-1 6463539 YP_002018336.1 CDS Ppha_1467 NC_011060.1 1546281 1546754 R KEGG: cph:Cpha266_1478 transposase; transposase complement(1546281..1546754) Pelodictyon phaeoclathratiforme BU-1 6463538 YP_002018337.1 CDS Ppha_1468 NC_011060.1 1546997 1548250 R PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: rso:RSc0827 hypothetical protein; hypothetical protein complement(1546997..1548250) Pelodictyon phaeoclathratiforme BU-1 6463537 YP_002018338.1 CDS Ppha_1469 NC_011060.1 1548271 1548981 R KEGG: pmn:PMN2A_0955 hypothetical protein; hypothetical protein complement(1548271..1548981) Pelodictyon phaeoclathratiforme BU-1 6463535 YP_002018339.1 CDS Ppha_1470 NC_011060.1 1548987 1551248 R PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: fre:Franean1_5335 peptidase C14 caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 complement(1548987..1551248) Pelodictyon phaeoclathratiforme BU-1 6463533 YP_002018340.1 CDS Ppha_1471 NC_011060.1 1551720 1555571 R PFAM: hypothetical protein-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mba:Mbar_A3708 hypothetical protein; hypothetical protein complement(1551720..1555571) Pelodictyon phaeoclathratiforme BU-1 6463532 YP_002018341.1 CDS Ppha_1473 NC_011060.1 1556189 1556617 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cch:Cag_0397 protein tyrosine phosphatase; protein tyrosine phosphatase complement(1556189..1556617) Pelodictyon phaeoclathratiforme BU-1 6463528 YP_002018342.1 CDS Ppha_1474 NC_011060.1 1556738 1557799 R PFAM: permease; KEGG: cph:Cpha266_0464 permease; permease complement(1556738..1557799) Pelodictyon phaeoclathratiforme BU-1 6463527 YP_002018343.1 CDS Ppha_1475 NC_011060.1 1557860 1558159 R TIGRFAM: redox-active disulfide protein 2; KEGG: cch:Cag_0399 redox-active disulfide protein 2; redox-active disulfide protein 2 complement(1557860..1558159) Pelodictyon phaeoclathratiforme BU-1 6463526 YP_002018344.1 CDS Ppha_1476 NC_011060.1 1558212 1558547 R PFAM: regulatory protein ArsR; KEGG: cch:Cag_0425 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(1558212..1558547) Pelodictyon phaeoclathratiforme BU-1 6463523 YP_002018345.1 CDS Ppha_1477 NC_011060.1 1558744 1559163 R KEGG: cch:Cag_0916 C-type cytochrome; C-type cytochrome complement(1558744..1559163) Pelodictyon phaeoclathratiforme BU-1 6463522 YP_002018346.1 CDS Ppha_1478 NC_011060.1 1559451 1559678 D KEGG: cph:Cpha266_2705 hypothetical protein; hypothetical protein 1559451..1559678 Pelodictyon phaeoclathratiforme BU-1 6463521 YP_002018347.1 CDS Ppha_1480 NC_011060.1 1560181 1560489 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1407 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein 1560181..1560489 Pelodictyon phaeoclathratiforme BU-1 6463519 YP_002018348.1 CDS Ppha_1481 NC_011060.1 1560497 1561804 R PFAM: protein of unknown function DUF195; KEGG: cph:Cpha266_1053 protein of unknown function DUF195; hypothetical protein complement(1560497..1561804) Pelodictyon phaeoclathratiforme BU-1 6463518 YP_002018349.1 CDS Ppha_1482 NC_011060.1 1562065 1563222 R PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cch:Cag_1114 DegT/DnrJ/EryC1/StrS family protein; DegT/DnrJ/EryC1/StrS aminotransferase complement(1562065..1563222) Pelodictyon phaeoclathratiforme BU-1 6463515 YP_002018350.1 CDS Ppha_1483 NC_011060.1 1563246 1564376 R PFAM: iron-containing alcohol dehydrogenase; KEGG: cch:Cag_1128 alcohol dehydrogenase, iron-containing; iron-containing alcohol dehydrogenase complement(1563246..1564376) Pelodictyon phaeoclathratiforme BU-1 6463514 YP_002018351.1 CDS Ppha_1484 NC_011060.1 1564390 1565103 R PFAM: acylneuraminate cytidylyltransferase; KEGG: cph:Cpha266_1514 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase complement(1564390..1565103) Pelodictyon phaeoclathratiforme BU-1 6463512 YP_002018352.1 CDS Ppha_1485 NC_011060.1 1565125 1566081 R KEGG: cph:Cpha266_1515 hypothetical protein; hypothetical protein complement(1565125..1566081) Pelodictyon phaeoclathratiforme BU-1 6463513 YP_002018353.1 CDS Ppha_1486 NC_011060.1 1566078 1567133 R KEGG: cph:Cpha266_1516 hypothetical protein; hypothetical protein complement(1566078..1567133) Pelodictyon phaeoclathratiforme BU-1 6463511 YP_002018354.1 CDS Ppha_1487 NC_011060.1 1567349 1569181 D PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_1519 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1567349..1569181 Pelodictyon phaeoclathratiforme BU-1 6463508 YP_002018355.1 CDS Ppha_1488 NC_011060.1 1569307 1570143 R PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: cph:Cpha266_1520 HhH-GPD family protein; HhH-GPD family protein complement(1569307..1570143) Pelodictyon phaeoclathratiforme BU-1 6463507 YP_002018356.1 CDS rplS NC_011060.1 1570331 1570693 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1570331..1570693) Pelodictyon phaeoclathratiforme BU-1 6463506 YP_002018357.1 CDS trmD NC_011060.1 1570706 1571452 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1570706..1571452) Pelodictyon phaeoclathratiforme BU-1 6463505 YP_002018358.1 CDS Ppha_1491 NC_011060.1 1571453 1571974 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cph:Cpha266_1523 16S rRNA processing protein RimM; 16S rRNA processing protein RimM complement(1571453..1571974) Pelodictyon phaeoclathratiforme BU-1 6463504 YP_002018359.1 CDS rpsP NC_011060.1 1571981 1572391 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1571981..1572391) Pelodictyon phaeoclathratiforme BU-1 6463503 YP_002018360.1 CDS Ppha_1493 NC_011060.1 1572440 1573789 R KEGG: cch:Cag_0805 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(1572440..1573789) Pelodictyon phaeoclathratiforme BU-1 6463502 YP_002018361.1 CDS Ppha_1494 NC_011060.1 1573952 1574938 D TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: pvi:Cvib_0937 RfaE bifunctional protein; rfaE bifunctional protein 1573952..1574938 Pelodictyon phaeoclathratiforme BU-1 6463500 YP_002018362.1 CDS Ppha_1495 NC_011060.1 1574907 1575545 R KEGG: cph:Cpha266_1527 hypothetical protein; hypothetical protein complement(1574907..1575545) Pelodictyon phaeoclathratiforme BU-1 6463498 YP_002018363.1 CDS Ppha_1496 NC_011060.1 1575596 1576252 R PFAM: cyclase/dehydrase; KEGG: cph:Cpha266_1528 cyclase/dehydrase; cyclase/dehydrase complement(1575596..1576252) Pelodictyon phaeoclathratiforme BU-1 6463497 YP_002018364.1 CDS Ppha_1497 NC_011060.1 1576299 1577969 R KEGG: cch:Cag_0813 peptidase S41A, C-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(1576299..1577969) Pelodictyon phaeoclathratiforme BU-1 6463495 YP_002018365.1 CDS Ppha_1498 NC_011060.1 1578743 1579225 R PFAM: Endoribonuclease L-PSP; KEGG: cph:Cpha266_1530 endoribonuclease L-PSP; endoribonuclease L-PSP complement(1578743..1579225) Pelodictyon phaeoclathratiforme BU-1 6463494 YP_002018366.1 CDS Ppha_1499 NC_011060.1 1579407 1580054 D PFAM: thiamine monophosphate synthase; KEGG: cph:Cpha266_1531 thiamine monophosphate synthase; thiamine monophosphate synthase 1579407..1580054 Pelodictyon phaeoclathratiforme BU-1 6463492 YP_002018367.1 CDS Ppha_1500 NC_011060.1 1580051 1580674 D KEGG: pvi:Cvib_0943 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 1580051..1580674 Pelodictyon phaeoclathratiforme BU-1 6463490 YP_002018368.1 CDS Ppha_1501 NC_011060.1 1580671 1581486 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cch:Cag_0817 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 1580671..1581486 Pelodictyon phaeoclathratiforme BU-1 6463489 YP_002018369.1 CDS Ppha_1502 NC_011060.1 1581488 1582825 R KEGG: plt:Plut_0956 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(1581488..1582825) Pelodictyon phaeoclathratiforme BU-1 6463488 YP_002018370.1 CDS Ppha_1503 NC_011060.1 1582865 1583716 R KEGG: cph:Cpha266_1535 hypothetical protein; hypothetical protein complement(1582865..1583716) Pelodictyon phaeoclathratiforme BU-1 6462237 YP_002018371.1 CDS Ppha_1504 NC_011060.1 1583698 1584402 R KEGG: cph:Cpha266_1536 hypothetical protein; hypothetical protein complement(1583698..1584402) Pelodictyon phaeoclathratiforme BU-1 6461924 YP_002018372.1 CDS Ppha_1505 NC_011060.1 1584457 1585968 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(1584457..1585968) Pelodictyon phaeoclathratiforme BU-1 6463487 YP_002018373.1 CDS Ppha_1506 NC_011060.1 1586001 1587059 R PFAM: phosphoesterase RecJ domain protein; KEGG: plt:Plut_0953 Dhh family protein; phosphoesterase RecJ domain-containing protein complement(1586001..1587059) Pelodictyon phaeoclathratiforme BU-1 6463486 YP_002018374.1 CDS Ppha_1507 NC_011060.1 1587075 1587218 R hypothetical protein complement(1587075..1587218) Pelodictyon phaeoclathratiforme BU-1 6463484 YP_002018375.1 CDS Ppha_1508 NC_011060.1 1587592 1588671 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: radical SAM protein; KEGG: pvi:Cvib_0950 radical SAM enzyme, Cfr family; radical SAM enzyme, Cfr family 1587592..1588671 Pelodictyon phaeoclathratiforme BU-1 6463483 YP_002018376.1 CDS Ppha_1509 NC_011060.1 1588693 1589478 D KEGG: cph:Cpha266_1540 hypothetical protein; hypothetical protein 1588693..1589478 Pelodictyon phaeoclathratiforme BU-1 6463482 YP_002018377.1 CDS Ppha_1510 NC_011060.1 1589490 1590146 D PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: cph:Cpha266_1541 adenylate kinase; Nucleoside-triphosphate--adenylate kinase 1589490..1590146 Pelodictyon phaeoclathratiforme BU-1 6463481 YP_002018378.1 CDS Ppha_1511 NC_011060.1 1590221 1592659 D KEGG: cch:Cag_0828 primosomal protein N; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 1590221..1592659 Pelodictyon phaeoclathratiforme BU-1 6463479 YP_002018379.1 CDS Ppha_1512 NC_011060.1 1592755 1593141 R KEGG: cte:CT0487 hypothetical protein; hypothetical protein complement(1592755..1593141) Pelodictyon phaeoclathratiforme BU-1 6463478 YP_002018380.1 CDS Ppha_1514 NC_011060.1 1593425 1595308 R PFAM: CBS domain containing protein; Chloride channel core; KEGG: cph:Cpha266_1246 Cl-channel, voltage-gated family protein; chloride channel core protein complement(1593425..1595308) Pelodictyon phaeoclathratiforme BU-1 6463475 YP_002018381.1 CDS pgi NC_011060.1 1595450 1597138 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1595450..1597138) Pelodictyon phaeoclathratiforme BU-1 6463474 YP_002018382.1 CDS Ppha_1516 NC_011060.1 1597171 1597566 R KEGG: plt:Plut_1162 anti-sigma regulatory factor (serine/threonine protein kinase); anti-sigma regulatory factor, serine/threonine protein kinase complement(1597171..1597566) Pelodictyon phaeoclathratiforme BU-1 6463473 YP_002018383.1 CDS Ppha_1517 NC_011060.1 1597859 1598521 D KEGG: cph:Cpha266_1093 hypothetical protein; hypothetical protein 1597859..1598521 Pelodictyon phaeoclathratiforme BU-1 6463470 YP_002018384.1 CDS Ppha_1518 NC_011060.1 1598591 1599724 R KEGG: cch:Cag_1375 hypothetical protein; hypothetical protein complement(1598591..1599724) Pelodictyon phaeoclathratiforme BU-1 6463468 YP_002018385.1 CDS Ppha_1519 NC_011060.1 1599779 1600831 R catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1599779..1600831) Pelodictyon phaeoclathratiforme BU-1 6463466 YP_002018386.1 CDS Ppha_1520 NC_011060.1 1601127 1602707 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1601127..1602707 Pelodictyon phaeoclathratiforme BU-1 6463465 YP_002018387.1 CDS Ppha_1521 NC_011060.1 1602800 1603987 R KEGG: cch:Cag_1378 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(1602800..1603987) Pelodictyon phaeoclathratiforme BU-1 6463461 YP_002018388.1 CDS Ppha_1522 NC_011060.1 1604260 1605945 R PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: cph:Cpha266_1087 lytic transglycosylase, catalytic; Lytic transglycosylase complement(1604260..1605945) Pelodictyon phaeoclathratiforme BU-1 6463459 YP_002018389.1 CDS truA NC_011060.1 1606058 1606789 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(1606058..1606789) Pelodictyon phaeoclathratiforme BU-1 6463457 YP_002018390.1 CDS Ppha_1524 NC_011060.1 1606873 1608783 D KEGG: cch:Cag_1381 alpha-amylase family protein; alpha-amylase family protein 1606873..1608783 Pelodictyon phaeoclathratiforme BU-1 6463454 YP_002018391.1 CDS Ppha_1525 NC_011060.1 1608844 1609755 D PFAM: PfkB domain protein; KEGG: pvi:Cvib_0779 PfkB domain protein; PfkB domain-containing protein 1608844..1609755 Pelodictyon phaeoclathratiforme BU-1 6463458 YP_002018392.1 CDS Ppha_1526 NC_011060.1 1609795 1611555 D PFAM: Na+/solute symporter; KEGG: cch:Cag_1384 sodium:solute symporter family protein; Na+/solute symporter 1609795..1611555 Pelodictyon phaeoclathratiforme BU-1 6463453 YP_002018393.1 CDS Ppha_1527 NC_011060.1 1611567 1612145 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cch:Cag_1393 Maf-like protein; maf protein 1611567..1612145 Pelodictyon phaeoclathratiforme BU-1 6463450 YP_002018394.1 CDS Ppha_1528 NC_011060.1 1612329 1613291 D PFAM: Alcohol dehydrogenase GroES domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: plt:Plut_0923 chlorobiumquinone synthase BchC related protein; Alcohol dehydrogenase GroES domain-containing protein 1612329..1613291 Pelodictyon phaeoclathratiforme BU-1 6463449 YP_002018395.1 CDS Ppha_1529 NC_011060.1 1613312 1614853 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1498 ATPase; ABC transporter-like protein 1613312..1614853 Pelodictyon phaeoclathratiforme BU-1 6463445 YP_002018396.1 CDS Ppha_1530 NC_011060.1 1614869 1615906 D PFAM: inner-membrane translocator; KEGG: cch:Cag_1499 membrane protein; inner-membrane translocator 1614869..1615906 Pelodictyon phaeoclathratiforme BU-1 6463443 YP_002018397.1 CDS Ppha_1531 NC_011060.1 1615999 1616199 D KEGG: cph:Cpha266_0991 hypothetical protein; hypothetical protein 1615999..1616199 Pelodictyon phaeoclathratiforme BU-1 6463440 YP_002018398.1 CDS Ppha_1532 NC_011060.1 1616263 1616436 D KEGG: cch:Cag_1501 hypothetical protein; hypothetical protein 1616263..1616436 Pelodictyon phaeoclathratiforme BU-1 6463437 YP_002018399.1 CDS Ppha_1533 NC_011060.1 1616443 1617177 R PFAM: PASTA domain containing protein; KEGG: cph:Cpha266_0989 PASTA domain containing protein; PASTA domain-containing protein complement(1616443..1617177) Pelodictyon phaeoclathratiforme BU-1 6463435 YP_002018400.1 CDS Ppha_1534 NC_011060.1 1617249 1618223 R PFAM: Polyprenyl synthetase; KEGG: cch:Cag_0963 polyprenyl synthetase; polyprenyl synthetase complement(1617249..1618223) Pelodictyon phaeoclathratiforme BU-1 6463434 YP_002018401.1 CDS Ppha_1535 NC_011060.1 1618507 1619349 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pvi:Cvib_0974 sec-independent protein translocase TatC; Sec-independent protein translocase subunit TatC 1618507..1619349 Pelodictyon phaeoclathratiforme BU-1 6463427 YP_002018402.1 CDS Ppha_1536 NC_011060.1 1619346 1620371 D PFAM: esterase; KEGG: pvi:Cvib_0975 esterase; esterase 1619346..1620371 Pelodictyon phaeoclathratiforme BU-1 6463425 YP_002018403.1 CDS coaE NC_011060.1 1620351 1620998 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(1620351..1620998) Pelodictyon phaeoclathratiforme BU-1 6463424 YP_002018404.1 CDS Ppha_1538 NC_011060.1 1620995 1621342 R KEGG: plt:Plut_1223 hypothetical protein; hypothetical protein complement(1620995..1621342) Pelodictyon phaeoclathratiforme BU-1 6463416 YP_002018405.1 CDS Ppha_1539 NC_011060.1 1621498 1622100 D PFAM: manganese and iron superoxide dismutase; KEGG: pvi:Cvib_0978 superoxide dismutase; superoxide dismutase 1621498..1622100 Pelodictyon phaeoclathratiforme BU-1 6463414 YP_002018406.1 CDS Ppha_1540 NC_011060.1 1622191 1623048 R KEGG: cch:Cag_0800 hypothetical protein; hypothetical protein complement(1622191..1623048) Pelodictyon phaeoclathratiforme BU-1 6463413 YP_002018407.1 CDS Ppha_1541 NC_011060.1 1623279 1624460 D PFAM: Protein of unknown function methylase KEGG: cch:Cag_0756 hypothetical protein; hypothetical protein 1623279..1624460 Pelodictyon phaeoclathratiforme BU-1 6463410 YP_002018408.1 CDS Ppha_1542 NC_011060.1 1624577 1624750 R KEGG: cte:CT1217 hypothetical protein; hypothetical protein complement(1624577..1624750) Pelodictyon phaeoclathratiforme BU-1 6463409 YP_002018409.1 CDS Ppha_1543 NC_011060.1 1624846 1627518 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: cph:Cpha266_0173 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase complement(1624846..1627518) Pelodictyon phaeoclathratiforme BU-1 6463407 YP_002018410.1 CDS Ppha_1544 NC_011060.1 1628084 1629019 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_1151 thioredoxin reductase; thioredoxin reductase complement(1628084..1629019) Pelodictyon phaeoclathratiforme BU-1 6463401 YP_002018411.1 CDS Ppha_1545 NC_011060.1 1629106 1629438 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pvi:Cvib_1012 thioredoxin; thioredoxin complement(1629106..1629438) Pelodictyon phaeoclathratiforme BU-1 6463400 YP_002018412.1 CDS Ppha_1546 NC_011060.1 1629858 1630202 R TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: pvi:Cvib_1012 thioredoxin; thioredoxin complement(1629858..1630202) Pelodictyon phaeoclathratiforme BU-1 6463399 YP_002018413.1 CDS Ppha_1547 NC_011060.1 1630294 1633863 R KEGG: cph:Cpha266_1195 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(1630294..1633863) Pelodictyon phaeoclathratiforme BU-1 6463395 YP_002018414.1 CDS Ppha_1548 NC_011060.1 1634317 1635408 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: cph:Cpha266_1951 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein complement(1634317..1635408) Pelodictyon phaeoclathratiforme BU-1 6463394 YP_002018415.1 CDS Ppha_1549 NC_011060.1 1635411 1635752 R PFAM: plasmid maintenance system killer; KEGG: sfu:Sfum_1442 killer suppression protein HigA; plasmid maintenance system killer protein complement(1635411..1635752) Pelodictyon phaeoclathratiforme BU-1 6463392 YP_002018416.1 CDS Ppha_1550 NC_011060.1 1635862 1638231 R PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cph:Cpha266_1194 kojibiose phosphorylase; Kojibiose phosphorylase complement(1635862..1638231) Pelodictyon phaeoclathratiforme BU-1 6463391 YP_002018417.1 CDS Ppha_1551 NC_011060.1 1638528 1639727 D PFAM: leucine-rich repeat protein; KEGG: cph:Cpha266_1193 internalin-related protein; hypothetical protein 1638528..1639727 Pelodictyon phaeoclathratiforme BU-1 6463388 YP_002018418.1 CDS Ppha_1552 NC_011060.1 1639834 1640433 R KEGG: cph:Cpha266_0645 hypothetical protein; hypothetical protein complement(1639834..1640433) Pelodictyon phaeoclathratiforme BU-1 6463385 YP_002018419.1 CDS Ppha_1553 NC_011060.1 1640685 1643756 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; signal transduction protein with Nacht domain complement(1640685..1643756) Pelodictyon phaeoclathratiforme BU-1 6463381 YP_002018420.1 CDS Ppha_1554 NC_011060.1 1643842 1644219 R PFAM: PilT protein domain protein; KEGG: neu:NE2174 hypothetical protein; PilT protein domain-containing protein complement(1643842..1644219) Pelodictyon phaeoclathratiforme BU-1 6463379 YP_002018421.1 CDS Ppha_1555 NC_011060.1 1644206 1644427 R KEGG: cch:Cag_0858 hypothetical protein; hypothetical protein complement(1644206..1644427) Pelodictyon phaeoclathratiforme BU-1 6463380 YP_002018422.1 CDS Ppha_1556 NC_011060.1 1644499 1645290 R KEGG: cph:Cpha266_0460 protein of unknown function DUF323; hypothetical protein complement(1644499..1645290) Pelodictyon phaeoclathratiforme BU-1 6462136 YP_002018423.1 CDS Ppha_1557 NC_011060.1 1645287 1646594 R PFAM: HipA domain protein; KEGG: bxe:Bxe_B2229 hypothetical protein; HipA domain-containing protein complement(1645287..1646594) Pelodictyon phaeoclathratiforme BU-1 6463376 YP_002018424.1 CDS Ppha_1558 NC_011060.1 1646591 1646935 R SMART: helix-turn-helix domain protein; KEGG: bpt:Bpet1353 DNA-binding protein; XRE family transcriptional regulator complement(1646591..1646935) Pelodictyon phaeoclathratiforme BU-1 6463374 YP_002018425.1 CDS Ppha_1561 NC_011060.1 1647426 1647650 R KEGG: mar:MAE_07660 hypothetical protein; hypothetical protein complement(1647426..1647650) Pelodictyon phaeoclathratiforme BU-1 6463361 YP_002018426.1 CDS Ppha_1562 NC_011060.1 1648007 1651141 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1299 protein of unknown function DUF323; signal transduction protein with Nacht domain complement(1648007..1651141) Pelodictyon phaeoclathratiforme BU-1 6463360 YP_002018427.1 CDS Ppha_1564 NC_011060.1 1651513 1653030 D PFAM: protein of unknown function DUF1703; KEGG: cch:Cag_1721 hypothetical protein; hypothetical protein 1651513..1653030 Pelodictyon phaeoclathratiforme BU-1 6463357 YP_002018428.1 CDS Ppha_1565 NC_011060.1 1653192 1656317 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; signal transduction protein with Nacht domain complement(1653192..1656317) Pelodictyon phaeoclathratiforme BU-1 6463354 YP_002018429.1 CDS Ppha_1568 NC_011060.1 1658015 1659940 R PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: cch:Cag_0859 oxaloacetate decarboxylase, alpha subunit; Oxaloacetate decarboxylase complement(1658015..1659940) Pelodictyon phaeoclathratiforme BU-1 6463347 YP_002018430.1 CDS Ppha_1569 NC_011060.1 1659989 1661521 R TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: cch:Cag_0860 Fe-S type hydro-lyase tartrate/fumarate alpha and beta region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha complement(1659989..1661521) Pelodictyon phaeoclathratiforme BU-1 6463345 YP_002018431.1 CDS Ppha_1570 NC_011060.1 1661569 1662033 R PFAM: UspA domain protein; KEGG: plt:Plut_1270 universal stress protein family; UspA domain-containing protein complement(1661569..1662033) Pelodictyon phaeoclathratiforme BU-1 6463343 YP_002018432.1 CDS Ppha_1571 NC_011060.1 1662223 1663845 D KEGG: cch:Cag_0861 hypothetical protein; hypothetical protein 1662223..1663845 Pelodictyon phaeoclathratiforme BU-1 6463342 YP_002018433.1 CDS Ppha_1572 NC_011060.1 1663842 1664717 R PFAM: protein of unknown function DUF125 transmembrane; KEGG: cch:Cag_1070 hypothetical protein; hypothetical protein complement(1663842..1664717) Pelodictyon phaeoclathratiforme BU-1 6463341 YP_002018434.1 CDS Ppha_1573 NC_011060.1 1664751 1666637 R molecular chaperone; heat shock protein 90 complement(1664751..1666637) Pelodictyon phaeoclathratiforme BU-1 6463340 YP_002018435.1 CDS Ppha_1574 NC_011060.1 1666707 1667576 R PFAM: N-acetylneuraminic acid synthase domain; KEGG: cch:Cag_1072 sialic acid synthase; N-acylneuraminate-9-phosphate synthase complement(1666707..1667576) Pelodictyon phaeoclathratiforme BU-1 6463337 YP_002018436.1 CDS Ppha_1575 NC_011060.1 1667656 1668174 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: plt:Plut_1275 phosphatase KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(1667656..1668174) Pelodictyon phaeoclathratiforme BU-1 6463334 YP_002018437.1 CDS Ppha_1576 NC_011060.1 1668190 1668378 R hypothetical protein complement(1668190..1668378) Pelodictyon phaeoclathratiforme BU-1 6463333 YP_002018438.1 CDS Ppha_1577 NC_011060.1 1668409 1668942 R PFAM: Inorganic pyrophosphatase; KEGG: plt:Plut_1277 inorganic diphosphatase; inorganic diphosphatase complement(1668409..1668942) Pelodictyon phaeoclathratiforme BU-1 6463330 YP_002018439.1 CDS Ppha_1578 NC_011060.1 1669053 1670378 R TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: cte:CT0822 sodium:alanine symporter family protein; amino acid carrier protein complement(1669053..1670378) Pelodictyon phaeoclathratiforme BU-1 6463329 YP_002018440.1 CDS Ppha_1579 NC_011060.1 1670659 1672248 D TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cch:Cag_0946 peptide chain release factor 3; peptide chain release factor 3 1670659..1672248 Pelodictyon phaeoclathratiforme BU-1 6463327 YP_002018441.1 CDS Ppha_1581 NC_011060.1 1672473 1674740 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cph:Cpha266_2532 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1672473..1674740 Pelodictyon phaeoclathratiforme BU-1 6463323 YP_002018442.1 CDS Ppha_1582 NC_011060.1 1674718 1675632 R PFAM: Domain of unknown function DUF1848; KEGG: cph:Cpha266_1022 hypothetical protein; hypothetical protein complement(1674718..1675632) Pelodictyon phaeoclathratiforme BU-1 6463319 YP_002018443.1 CDS Ppha_1583 NC_011060.1 1675981 1676208 D KEGG: cph:Cpha266_1681 hypothetical protein; hypothetical protein 1675981..1676208 Pelodictyon phaeoclathratiforme BU-1 6463318 YP_002018444.1 CDS Ppha_1584 NC_011060.1 1676261 1677727 R KEGG: cph:Cpha266_1680 Pep581 peptidase. Metallo peptidase. MEROPS family M20C; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase complement(1676261..1677727) Pelodictyon phaeoclathratiforme BU-1 6463317 YP_002018445.1 CDS Ppha_1585 NC_011060.1 1677839 1678372 R KEGG: cph:Cpha266_1686 hypothetical protein; hypothetical protein complement(1677839..1678372) Pelodictyon phaeoclathratiforme BU-1 6463313 YP_002018446.1 CDS Ppha_1586 NC_011060.1 1678518 1678883 R PFAM: Domain of unknown function DUF1801; KEGG: cph:Cpha266_1691 hypothetical protein; hypothetical protein complement(1678518..1678883) Pelodictyon phaeoclathratiforme BU-1 6463312 YP_002018447.1 CDS Ppha_1587 NC_011060.1 1679085 1682279 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; hypothetical protein complement(1679085..1682279) Pelodictyon phaeoclathratiforme BU-1 6463311 YP_002018448.1 CDS Ppha_1588 NC_011060.1 1682309 1682725 R PFAM: protein of unknown function DUF86; KEGG: cph:Cpha266_0768 protein of unknown function DUF86; hypothetical protein complement(1682309..1682725) Pelodictyon phaeoclathratiforme BU-1 6463306 YP_002018449.1 CDS Ppha_1589 NC_011060.1 1682710 1683108 R PFAM: DNA polymerase beta domain protein region; KEGG: cph:Cpha266_0766 DNA polymerase, beta domain protein region; DNA polymerase beta domain-containing protein complement(1682710..1683108) Pelodictyon phaeoclathratiforme BU-1 6463303 YP_002018450.1 CDS Ppha_1590 NC_011060.1 1683525 1684286 D KEGG: cph:Cpha266_1424 nitroreductase; nitroreductase 1683525..1684286 Pelodictyon phaeoclathratiforme BU-1 6463300 YP_002018451.1 CDS Ppha_1591 NC_011060.1 1684291 1684752 R PFAM: protein of unknown function DUF45; KEGG: mma:MM_2291 zinc metalloprotease; hypothetical protein complement(1684291..1684752) Pelodictyon phaeoclathratiforme BU-1 6463299 YP_002018452.1 CDS Ppha_1593 NC_011060.1 1685000 1685212 R PFAM: protein of unknown function UPF0150; KEGG: tbd:Tbd_1973 hypothetical protein; hypothetical protein complement(1685000..1685212) Pelodictyon phaeoclathratiforme BU-1 6463295 YP_002018453.1 CDS Ppha_1594 NC_011060.1 1685212 1685466 R KEGG: mar:MAE_00130 hypothetical protein; hypothetical protein complement(1685212..1685466) Pelodictyon phaeoclathratiforme BU-1 6463294 YP_002018454.1 CDS Ppha_1595 NC_011060.1 1685746 1685979 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: cph:Cpha266_1697 prevent-host-death family protein; prevent-host-death family protein 1685746..1685979 Pelodictyon phaeoclathratiforme BU-1 6463293 YP_002018455.1 CDS Ppha_1596 NC_011060.1 1686120 1686422 D KEGG: cph:Cpha266_1700 hypothetical protein; hypothetical protein 1686120..1686422 Pelodictyon phaeoclathratiforme BU-1 6463292 YP_002018456.1 CDS Ppha_1597 NC_011060.1 1686439 1686819 D PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1701 helix-turn-helix domain protein; helix-turn-helix domain-containing protein 1686439..1686819 Pelodictyon phaeoclathratiforme BU-1 6463291 YP_002018457.1 CDS Ppha_1599 NC_011060.1 1687211 1688176 R KEGG: mms:mma_0495 hypothetical protein; hypothetical protein complement(1687211..1688176) Pelodictyon phaeoclathratiforme BU-1 6463287 YP_002018458.1 CDS Ppha_1600 NC_011060.1 1688489 1689544 R KEGG: cak:Caul_4682 hypothetical protein; hypothetical protein complement(1688489..1689544) Pelodictyon phaeoclathratiforme BU-1 6463286 YP_002018459.1 CDS Ppha_1602 NC_011060.1 1690805 1691161 R KEGG: tdn:Tmden_0480 hypothetical protein; hypothetical protein complement(1690805..1691161) Pelodictyon phaeoclathratiforme BU-1 6463280 YP_002018460.1 CDS Ppha_1603 NC_011060.1 1691266 1691484 R KEGG: cch:Cag_1049 hypothetical protein; hypothetical protein complement(1691266..1691484) Pelodictyon phaeoclathratiforme BU-1 6463279 YP_002018461.1 CDS Ppha_1604 NC_011060.1 1691529 1692284 R KEGG: mma:MM_2294 type I restriction-modification system specificity subunit; type I restriction-modification system specificity subunit complement(1691529..1692284) Pelodictyon phaeoclathratiforme BU-1 6463277 YP_002018462.1 CDS Ppha_1607 NC_011060.1 1693263 1694093 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: cph:Cpha266_1254 peptidase C14, caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 1693263..1694093 Pelodictyon phaeoclathratiforme BU-1 6463273 YP_002018463.1 CDS Ppha_1608 NC_011060.1 1694426 1695118 D PFAM: peptidase membrane zinc metallopeptidase KEGG: pvi:Cvib_1043 peptidase, membrane zinc metallopeptidase; peptidase membrane zinc metallopeptidase 1694426..1695118 Pelodictyon phaeoclathratiforme BU-1 6463272 YP_002018464.1 CDS Ppha_1609 NC_011060.1 1695177 1696664 D PFAM: amino acid permease-associated region; KEGG: plt:Plut_1308 amino acid permease; amino acid permease-associated protein 1695177..1696664 Pelodictyon phaeoclathratiforme BU-1 6463268 YP_002018465.1 CDS Ppha_1610 NC_011060.1 1696679 1697377 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_1636 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1696679..1697377 Pelodictyon phaeoclathratiforme BU-1 6463262 YP_002018466.1 CDS Ppha_1611 NC_011060.1 1697435 1698088 D PFAM: thymidylate kinase; KEGG: plt:Plut_1310 thymidylate kinase; dTMP kinase 1697435..1698088 Pelodictyon phaeoclathratiforme BU-1 6463261 YP_002018467.1 CDS Ppha_1612 NC_011060.1 1698222 1699484 D KEGG: cph:Cpha266_1639 hypothetical protein; hypothetical protein 1698222..1699484 Pelodictyon phaeoclathratiforme BU-1 6463258 YP_002018468.1 CDS Ppha_1613 NC_011060.1 1699517 1702675 D TIGRFAM: beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0927 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 1699517..1702675 Pelodictyon phaeoclathratiforme BU-1 6463256 YP_002018469.1 CDS Ppha_1614 NC_011060.1 1702779 1703819 D TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: plt:Plut_1313 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 1702779..1703819 Pelodictyon phaeoclathratiforme BU-1 6463254 YP_002018470.1 CDS Ppha_1615 NC_011060.1 1703843 1704574 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cch:Cag_0929 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1703843..1704574 Pelodictyon phaeoclathratiforme BU-1 6463251 YP_002018471.1 CDS Ppha_1616 NC_011060.1 1704859 1705311 D PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0930 phenylacetic acid degradation-related protein; thioesterase superfamily protein 1704859..1705311 Pelodictyon phaeoclathratiforme BU-1 6463245 YP_002018472.1 CDS Ppha_1617 NC_011060.1 1705411 1706820 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1644 radical SAM protein; radical SAM protein 1705411..1706820 Pelodictyon phaeoclathratiforme BU-1 6463241 YP_002018473.1 CDS Ppha_1619 NC_011060.1 1706963 1707196 R KEGG: cph:Cpha266_1649 hypothetical protein; hypothetical protein complement(1706963..1707196) Pelodictyon phaeoclathratiforme BU-1 6463233 YP_002018474.1 CDS aspS NC_011060.1 1707460 1709265 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1707460..1709265) Pelodictyon phaeoclathratiforme BU-1 6463231 YP_002018475.1 CDS Ppha_1621 NC_011060.1 1709365 1709880 R KEGG: cch:Cag_0933 DNA polymerase III, gamma/tau subunit; DNA polymerase III subunits gamma and tau complement(1709365..1709880) Pelodictyon phaeoclathratiforme BU-1 6463229 YP_002018476.1 CDS Ppha_1622 NC_011060.1 1709940 1711145 R KEGG: cch:Cag_0934 ATPase; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(1709940..1711145) Pelodictyon phaeoclathratiforme BU-1 6463226 YP_002018477.1 CDS Ppha_1623 NC_011060.1 1711142 1712428 R PFAM: ribonuclease BN; KEGG: cph:Cpha266_1653 ribonuclease BN; ribonuclease BN complement(1711142..1712428) Pelodictyon phaeoclathratiforme BU-1 6463225 YP_002018478.1 CDS Ppha_1624 NC_011060.1 1712494 1713759 R PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_1654 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1712494..1713759) Pelodictyon phaeoclathratiforme BU-1 6463223 YP_002018479.1 CDS Ppha_1625 NC_011060.1 1713765 1714469 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(1713765..1714469) Pelodictyon phaeoclathratiforme BU-1 6463222 YP_002018480.1 CDS Ppha_1626 NC_011060.1 1714483 1714743 R TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: cch:Cag_0938 phosphoribosylformylglycinamidine synthetase PurS; phosphoribosylformylglycinamidine synthase PurS complement(1714483..1714743) Pelodictyon phaeoclathratiforme BU-1 6463221 YP_002018481.1 CDS Ppha_1627 NC_011060.1 1714766 1715569 R TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cch:Cag_0939 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase complement(1714766..1715569) Pelodictyon phaeoclathratiforme BU-1 6463217 YP_002018482.1 CDS panB NC_011060.1 1716200 1717033 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1716200..1717033) Pelodictyon phaeoclathratiforme BU-1 6463215 YP_002018483.1 CDS Ppha_1629 NC_011060.1 1717046 1717861 R PFAM: biotin/lipoate A/B protein ligase; KEGG: cch:Cag_0906 lipoate-protein ligase A; biotin/lipoate A/B protein ligase complement(1717046..1717861) Pelodictyon phaeoclathratiforme BU-1 6463213 YP_002018484.1 CDS Ppha_1630 NC_011060.1 1718021 1718434 D PFAM: CoA-binding domain protein; KEGG: plt:Plut_1330 hypothetical protein; CoA-binding domain-containing protein 1718021..1718434 Pelodictyon phaeoclathratiforme BU-1 6463212 YP_002018485.1 CDS ddl NC_011060.1 1718473 1719555 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 1718473..1719555 Pelodictyon phaeoclathratiforme BU-1 6463210 YP_002018486.1 CDS Ppha_1632 NC_011060.1 1719552 1720127 D KEGG: cch:Cag_0904 hypothetical protein; hypothetical protein 1719552..1720127 Pelodictyon phaeoclathratiforme BU-1 6463208 YP_002018487.1 CDS Ppha_1633 NC_011060.1 1720231 1721643 D PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein; outer membrane efflux protein 1720231..1721643 Pelodictyon phaeoclathratiforme BU-1 6463206 YP_002018488.1 CDS Ppha_1634 NC_011060.1 1721640 1722893 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_0987 secretion protein HlyD; RND family efflux transporter MFP subunit 1721640..1722893 Pelodictyon phaeoclathratiforme BU-1 6463202 YP_002018489.1 CDS Ppha_1635 NC_011060.1 1722901 1723590 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1335 ATPase; ABC transporter-like protein 1722901..1723590 Pelodictyon phaeoclathratiforme BU-1 6463201 YP_002018490.1 CDS Ppha_1636 NC_011060.1 1723587 1724852 D PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214; hypothetical protein 1723587..1724852 Pelodictyon phaeoclathratiforme BU-1 6463199 YP_002018491.1 CDS Ppha_1637 NC_011060.1 1724861 1726096 D PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214; hypothetical protein 1724861..1726096 Pelodictyon phaeoclathratiforme BU-1 6463198 YP_002018492.1 CDS Ppha_1638 NC_011060.1 1726267 1726956 D PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: plt:Plut_1338 OmpA family protein; OmpA/MotB domain-containing protein 1726267..1726956 Pelodictyon phaeoclathratiforme BU-1 6463195 YP_002018493.1 CDS Ppha_1639 NC_011060.1 1727087 1727533 D KEGG: cph:Cpha266_1672 hypothetical protein; hypothetical protein 1727087..1727533 Pelodictyon phaeoclathratiforme BU-1 6463191 YP_002018494.1 CDS Ppha_1640 NC_011060.1 1727620 1730283 D PFAM: protein of unknown function DUF547; glycoside hydrolase 15-related; KEGG: noc:Noc_2053 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 1727620..1730283 Pelodictyon phaeoclathratiforme BU-1 6463190 YP_002018495.1 CDS Ppha_1641 NC_011060.1 1730299 1731351 R TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: pvi:Cvib_0713 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase complement(1730299..1731351) Pelodictyon phaeoclathratiforme BU-1 6463187 YP_002018496.1 CDS Ppha_1642 NC_011060.1 1731529 1732500 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1731529..1732500 Pelodictyon phaeoclathratiforme BU-1 6463186 YP_002018497.1 CDS Ppha_1643 NC_011060.1 1732532 1733131 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1732532..1733131 Pelodictyon phaeoclathratiforme BU-1 6463182 YP_002018498.1 CDS Ppha_1644 NC_011060.1 1733251 1734708 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1676 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1733251..1734708 Pelodictyon phaeoclathratiforme BU-1 6463181 YP_002018499.1 CDS Ppha_1645 NC_011060.1 1734767 1735180 R KEGG: cph:Cpha266_0748 hypothetical protein; hypothetical protein complement(1734767..1735180) Pelodictyon phaeoclathratiforme BU-1 6463179 YP_002018500.1 CDS Ppha_1646 NC_011060.1 1735290 1737533 R PFAM: ComEC/Rec2-related protein; KEGG: cph:Cpha266_1722 ComEC/Rec2-related protein; ComEC/Rec2-like protein complement(1735290..1737533) Pelodictyon phaeoclathratiforme BU-1 6463176 YP_002018501.1 CDS Ppha_1647 NC_011060.1 1737591 1738460 D KEGG: cch:Cag_1108 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1737591..1738460 Pelodictyon phaeoclathratiforme BU-1 6463175 YP_002018502.1 CDS Ppha_1648 NC_011060.1 1738491 1739744 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cph:Cpha266_1724 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1738491..1739744) Pelodictyon phaeoclathratiforme BU-1 6463174 YP_002018503.1 CDS rpmG NC_011060.1 1739894 1740076 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 1739894..1740076 Pelodictyon phaeoclathratiforme BU-1 6463173 YP_002018504.1 CDS Ppha_1650 NC_011060.1 1740355 1741152 D PFAM: protein of unknown function DUF164; KEGG: cch:Cag_1111 hypothetical protein; hypothetical protein 1740355..1741152 Pelodictyon phaeoclathratiforme BU-1 6463163 YP_002018505.1 CDS Ppha_1651 NC_011060.1 1741651 1741875 R KEGG: cph:Cpha266_1731 hypothetical protein; hypothetical protein complement(1741651..1741875) Pelodictyon phaeoclathratiforme BU-1 6463159 YP_002018506.1 CDS Ppha_1652 NC_011060.1 1742014 1745646 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: cch:Cag_0799 oxidoreductase, FAD-binding; FAD linked oxidase domain-containing protein complement(1742014..1745646) Pelodictyon phaeoclathratiforme BU-1 6463155 YP_002018507.1 CDS Ppha_1653 NC_011060.1 1746059 1749040 D KEGG: cph:Cpha266_1788 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; SMART: PAS domain containing protein; MCP methyltransferase/methylesterase 1746059..1749040 Pelodictyon phaeoclathratiforme BU-1 6463154 YP_002018508.1 CDS Ppha_1654 NC_011060.1 1749068 1752415 D KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 1749068..1752415 Pelodictyon phaeoclathratiforme BU-1 6463151 YP_002018509.1 CDS Ppha_1655 NC_011060.1 1752464 1753714 R KEGG: cph:Cpha266_1051 hypothetical protein; hypothetical protein complement(1752464..1753714) Pelodictyon phaeoclathratiforme BU-1 6463148 YP_002018510.1 CDS Ppha_1656 NC_011060.1 1754063 1754317 D KEGG: cph:Cpha266_1437 hypothetical protein; hypothetical protein 1754063..1754317 Pelodictyon phaeoclathratiforme BU-1 6463145 YP_002018511.1 CDS Ppha_1657 NC_011060.1 1754304 1756523 D TIGRFAM: CRISPR-associated helicase Cas3; SMART: DEAD-like helicases; KEGG: dvl:Dvul_2978 metal dependent phosphohydrolase; CRISPR-associated helicase Cas3 1754304..1756523 Pelodictyon phaeoclathratiforme BU-1 6463143 YP_002018512.1 CDS Ppha_1658 NC_011060.1 1756542 1757177 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: dvl:Dvul_2977 CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5 family 1756542..1757177 Pelodictyon phaeoclathratiforme BU-1 6463142 YP_002018513.1 CDS Ppha_1659 NC_011060.1 1757174 1758835 D TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: drm:Dred_1004 CRISPR-associated protein, Csd1 family; CRISPR-associated protein, Csd1 family 1757174..1758835 Pelodictyon phaeoclathratiforme BU-1 6463140 YP_002018514.1 CDS Ppha_1660 NC_011060.1 1758864 1759904 D TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: cph:Cpha266_1433 CRISPR-associated protein, Csd2 family; CRISPR-associated protein, Csd2 family 1758864..1759904 Pelodictyon phaeoclathratiforme BU-1 6463139 YP_002018515.1 CDS Ppha_1661 NC_011060.1 1759908 1760552 D TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: cph:Cpha266_1432 CRISPR-associated protein Cas4; CRISPR-associated protein Cas4 1759908..1760552 Pelodictyon phaeoclathratiforme BU-1 6463137 YP_002018516.1 CDS Ppha_1662 NC_011060.1 1760549 1761580 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: cph:Cpha266_1431 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 1760549..1761580 Pelodictyon phaeoclathratiforme BU-1 6463252 YP_002018517.1 CDS Ppha_1663 NC_011060.1 1761586 1761876 D TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cph:Cpha266_1430 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 1761586..1761876 Pelodictyon phaeoclathratiforme BU-1 6463133 YP_002018518.1 CDS Ppha_1664 NC_011060.1 1768610 1770064 D KEGG: cph:Cpha266_1274 hypothetical protein; hypothetical protein 1768610..1770064 Pelodictyon phaeoclathratiforme BU-1 6463129 YP_002018519.1 CDS Ppha_1665 NC_011060.1 1770154 1771257 R PFAM: transposase IS4 family protein; KEGG: dol:Dole_3091 transposase IS4 family protein; transposase IS4 family protein complement(1770154..1771257) Pelodictyon phaeoclathratiforme BU-1 6463126 YP_002018520.1 CDS Ppha_1666 NC_011060.1 1771327 1772973 D PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein 1771327..1772973 Pelodictyon phaeoclathratiforme BU-1 6463123 YP_002018521.1 CDS Ppha_1668 NC_011060.1 1773380 1776535 R KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(1773380..1776535) Pelodictyon phaeoclathratiforme BU-1 6463117 YP_002018522.1 CDS Ppha_1669 NC_011060.1 1776572 1777330 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_1050 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1776572..1777330) Pelodictyon phaeoclathratiforme BU-1 6463115 YP_002018523.1 CDS Ppha_1670 NC_011060.1 1777350 1777922 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: gfo:GFO_3028 DNA polymerase III subunit alpha-1; Exonuclease RNase T and DNA polymerase III complement(1777350..1777922) Pelodictyon phaeoclathratiforme BU-1 6463111 YP_002018524.1 CDS Ppha_1671 NC_011060.1 1777944 1778309 R KEGG: cch:Cag_0968 hypothetical protein; hypothetical protein complement(1777944..1778309) Pelodictyon phaeoclathratiforme BU-1 6463109 YP_002018525.1 CDS Ppha_1672 NC_011060.1 1778373 1779242 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1049 glycosyl transferase, family 2; family 2 glycosyl transferase complement(1778373..1779242) Pelodictyon phaeoclathratiforme BU-1 6463108 YP_002018526.1 CDS Ppha_1673 NC_011060.1 1779265 1780536 R KEGG: cph:Cpha266_1047 hypothetical protein; hypothetical protein complement(1779265..1780536) Pelodictyon phaeoclathratiforme BU-1 6463107 YP_002018527.1 CDS Ppha_1674 NC_011060.1 1780537 1780935 R KEGG: cph:Cpha266_1046 hypothetical protein; hypothetical protein complement(1780537..1780935) Pelodictyon phaeoclathratiforme BU-1 6463106 YP_002018528.1 CDS Ppha_1675 NC_011060.1 1780985 1784089 R PFAM: acriflavin resistance protein; KEGG: cch:Cag_0971 NolG efflux transporter; acriflavin resistance protein complement(1780985..1784089) Pelodictyon phaeoclathratiforme BU-1 6463105 YP_002018529.1 CDS Ppha_1676 NC_011060.1 1784086 1785189 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cch:Cag_0972 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1784086..1785189) Pelodictyon phaeoclathratiforme BU-1 6463103 YP_002018530.1 CDS Ppha_1677 NC_011060.1 1785284 1786015 R PFAM: PhoU family protein; KEGG: cph:Cpha266_1043 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU complement(1785284..1786015) Pelodictyon phaeoclathratiforme BU-1 6463101 YP_002018531.1 CDS Ppha_1678 NC_011060.1 1786170 1786829 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cch:Cag_0974 PhoU; phosphate uptake regulator PhoU complement(1786170..1786829) Pelodictyon phaeoclathratiforme BU-1 6463099 YP_002018532.1 CDS Ppha_1679 NC_011060.1 1786848 1787708 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(1786848..1787708) Pelodictyon phaeoclathratiforme BU-1 6463098 YP_002018533.1 CDS Ppha_1680 NC_011060.1 1787720 1789066 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1040 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease complement(1787720..1789066) Pelodictyon phaeoclathratiforme BU-1 6463095 YP_002018534.1 CDS Ppha_1681 NC_011060.1 1789119 1790282 R TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_1039 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease complement(1789119..1790282) Pelodictyon phaeoclathratiforme BU-1 6463094 YP_002018535.1 CDS Ppha_1682 NC_011060.1 1790503 1791333 R TIGRFAM: phosphate binding protein; KEGG: cph:Cpha266_1038 phosphate binding protein; phosphate binding protein complement(1790503..1791333) Pelodictyon phaeoclathratiforme BU-1 6463091 YP_002018536.1 CDS Ppha_1683 NC_011060.1 1791570 1791794 D KEGG: cch:Cag_0975 chlorosome envelope protein B; chlorosome envelope protein B 1791570..1791794 Pelodictyon phaeoclathratiforme BU-1 6463089 YP_002018537.1 CDS Ppha_1684 NC_011060.1 1791913 1792575 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1237 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase 1791913..1792575 Pelodictyon phaeoclathratiforme BU-1 6463086 YP_002018538.1 CDS Ppha_1685 NC_011060.1 1792726 1801284 R PFAM: Alkaline phosphatase; metallophosphoesterase; metalloenzyme domain protein; 5'-Nucleotidase domain protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: cph:Cpha266_1750 5'-nucleotidase domain protein; 5'-nucleotidase complement(1792726..1801284) Pelodictyon phaeoclathratiforme BU-1 6463085 YP_002018539.1 CDS Ppha_1686 NC_011060.1 1801515 1801778 R KEGG: cph:Cpha266_1035 hypothetical protein; hypothetical protein complement(1801515..1801778) Pelodictyon phaeoclathratiforme BU-1 6463083 YP_002018540.1 CDS Ppha_1687 NC_011060.1 1801851 1802513 R PFAM: GCN5-related N-acetyltransferase; KEGG: pvi:Cvib_1001 hypothetical protein; N-acetyltransferase GCN5 complement(1801851..1802513) Pelodictyon phaeoclathratiforme BU-1 6463081 YP_002018541.1 CDS Ppha_1688 NC_011060.1 1802539 1803252 R PFAM: phospholipid/glycerol acyltransferase; KEGG: plt:Plut_1250 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1802539..1803252) Pelodictyon phaeoclathratiforme BU-1 6463078 YP_002018542.1 CDS Ppha_1689 NC_011060.1 1803530 1804990 D KEGG: aae:aq_031 transporter (PHO87 family); hypothetical protein 1803530..1804990 Pelodictyon phaeoclathratiforme BU-1 6463082 YP_002018543.1 CDS Ppha_1690 NC_011060.1 1805107 1806210 R KEGG: cph:Cpha266_1199 hypothetical protein; hypothetical protein complement(1805107..1806210) Pelodictyon phaeoclathratiforme BU-1 6463075 YP_002018544.1 CDS Ppha_1691 NC_011060.1 1806683 1807042 D KEGG: cph:Cpha266_1030 hypothetical protein; hypothetical protein 1806683..1807042 Pelodictyon phaeoclathratiforme BU-1 6463073 YP_002018545.1 CDS Ppha_1692 NC_011060.1 1807249 1807566 D KEGG: dol:Dole_2934 hypothetical protein; hypothetical protein 1807249..1807566 Pelodictyon phaeoclathratiforme BU-1 6463070 YP_002018546.1 CDS Ppha_1693 NC_011060.1 1807810 1808391 D KEGG: cph:Cpha266_2366 helix-turn-helix domain protein; hypothetical protein 1807810..1808391 Pelodictyon phaeoclathratiforme BU-1 6463068 YP_002018547.1 CDS Ppha_1694 NC_011060.1 1808561 1809613 R KEGG: cte:CT0885 hypothetical protein; hypothetical protein complement(1808561..1809613) Pelodictyon phaeoclathratiforme BU-1 6463065 YP_002018548.1 CDS Ppha_1695 NC_011060.1 1809788 1810339 R PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex; pyruvoyl-dependent arginine decarboxylase complement(1809788..1810339) Pelodictyon phaeoclathratiforme BU-1 6463057 YP_002018549.1 CDS Ppha_1696 NC_011060.1 1810730 1811884 D KEGG: cte:CT0885 hypothetical protein; hypothetical protein 1810730..1811884 Pelodictyon phaeoclathratiforme BU-1 6463056 YP_002018550.1 CDS Ppha_1697 NC_011060.1 1811957 1812109 R KEGG: cph:Cpha266_0991 hypothetical protein; hypothetical protein complement(1811957..1812109) Pelodictyon phaeoclathratiforme BU-1 6463055 YP_002018551.1 CDS Ppha_1698 NC_011060.1 1812420 1813991 D PFAM: CHAD domain containing protein; KEGG: cte:CT0884 hypothetical protein; CHAD domain-containing protein 1812420..1813991 Pelodictyon phaeoclathratiforme BU-1 6463054 YP_002018552.1 CDS Ppha_1699 NC_011060.1 1813988 1814737 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: pvi:Cvib_0908 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 1813988..1814737 Pelodictyon phaeoclathratiforme BU-1 6463053 YP_002018553.1 CDS Ppha_1700 NC_011060.1 1814894 1816366 D PFAM: Alkaline phosphatase; KEGG: cph:Cpha266_2693 alkaline phosphatase; alkaline phosphatase 1814894..1816366 Pelodictyon phaeoclathratiforme BU-1 6463052 YP_002018554.1 CDS Ppha_1701 NC_011060.1 1816437 1817147 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pvi:Cvib_1147 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 1816437..1817147 Pelodictyon phaeoclathratiforme BU-1 6463047 YP_002018555.1 CDS Ppha_1702 NC_011060.1 1817137 1818963 D KEGG: cph:Cpha266_0881 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1817137..1818963 Pelodictyon phaeoclathratiforme BU-1 6463046 YP_002018556.1 CDS Ppha_1703 NC_011060.1 1819046 1820107 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1813 glycosyl transferase, family 2; family 2 glycosyl transferase 1819046..1820107 Pelodictyon phaeoclathratiforme BU-1 6463045 YP_002018557.1 CDS Ppha_1704 NC_011060.1 1820141 1821337 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1811 glycosyl transferase, family 2; family 2 glycosyl transferase 1820141..1821337 Pelodictyon phaeoclathratiforme BU-1 6463041 YP_002018558.1 CDS Ppha_1705 NC_011060.1 1821344 1821637 R PFAM: plasmid stabilization system; KEGG: cch:Cag_1130 hypothetical protein; plasmid stabilization system complement(1821344..1821637) Pelodictyon phaeoclathratiforme BU-1 6463038 YP_002018559.1 CDS Ppha_1706 NC_011060.1 1821634 1821840 R KEGG: swo:Swol_1551 hypothetical protein; hypothetical protein complement(1821634..1821840) Pelodictyon phaeoclathratiforme BU-1 6463036 YP_002018560.1 CDS Ppha_1707 NC_011060.1 1822165 1822671 D KEGG: cph:Cpha266_1183 hypothetical protein; hypothetical protein 1822165..1822671 Pelodictyon phaeoclathratiforme BU-1 6463035 YP_002018561.1 CDS Ppha_1708 NC_011060.1 1822804 1823028 D PFAM: protein of unknown function DUF433; KEGG: cph:Cpha266_2222 protein of unknown function DUF433; hypothetical protein 1822804..1823028 Pelodictyon phaeoclathratiforme BU-1 6463034 YP_002018562.1 CDS Ppha_1709 NC_011060.1 1823025 1823369 D KEGG: cph:Cpha266_2196 hypothetical protein; hypothetical protein 1823025..1823369 Pelodictyon phaeoclathratiforme BU-1 6463033 YP_002018563.1 CDS Ppha_1710 NC_011060.1 1823464 1823631 D KEGG: cph:Cpha266_1183 hypothetical protein; hypothetical protein 1823464..1823631 Pelodictyon phaeoclathratiforme BU-1 6463024 YP_002018564.1 CDS Ppha_1711 NC_011060.1 1823775 1824407 D KEGG: cph:Cpha266_0769 hypothetical protein; hypothetical protein 1823775..1824407 Pelodictyon phaeoclathratiforme BU-1 6463023 YP_002018565.1 CDS Ppha_1712 NC_011060.1 1824416 1826869 D PFAM: hypothetical protein-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 hypothetical protein; hypothetical protein 1824416..1826869 Pelodictyon phaeoclathratiforme BU-1 6463022 YP_002018566.1 CDS Ppha_1713 NC_011060.1 1827045 1827290 D KEGG: cph:Cpha266_2604 hypothetical protein; hypothetical protein 1827045..1827290 Pelodictyon phaeoclathratiforme BU-1 6463021 YP_002018567.1 CDS Ppha_1714 NC_011060.1 1827457 1827660 R KEGG: gur:Gura_2218 hypothetical protein; hypothetical protein complement(1827457..1827660) Pelodictyon phaeoclathratiforme BU-1 6463020 YP_002018568.1 CDS Ppha_1715 NC_011060.1 1827650 1827931 R PFAM: protein of unknown function DUF497; KEGG: rrs:RoseRS_0832 protein of unknown function DUF497; hypothetical protein complement(1827650..1827931) Pelodictyon phaeoclathratiforme BU-1 6463009 YP_002018569.1 CDS Ppha_1716 NC_011060.1 1828073 1828300 R KEGG: cph:Cpha266_0070 helix-turn-helix protein, CopG family; helix-turn-helix protein, CopG family complement(1828073..1828300) Pelodictyon phaeoclathratiforme BU-1 6463001 YP_002018570.1 CDS Ppha_1717 NC_011060.1 1828350 1828853 R PFAM: GCN5-related N-acetyltransferase; KEGG: rpa:RPA4135 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1828350..1828853) Pelodictyon phaeoclathratiforme BU-1 6462999 YP_002018571.1 CDS Ppha_1718 NC_011060.1 1828860 1829138 R PFAM: Protein of unknown function DUF1778; KEGG: rpe:RPE_1144 hypothetical protein; hypothetical protein complement(1828860..1829138) Pelodictyon phaeoclathratiforme BU-1 6462993 YP_002018572.1 CDS Ppha_1720 NC_011060.1 1830494 1830883 R PFAM: PilT protein domain protein; KEGG: cch:Cag_0660 hypothetical protein; PilT protein domain-containing protein complement(1830494..1830883) Pelodictyon phaeoclathratiforme BU-1 6462982 YP_002018573.1 CDS Ppha_1721 NC_011060.1 1830880 1831110 R KEGG: cch:Cag_0659 hypothetical protein; hypothetical protein complement(1830880..1831110) Pelodictyon phaeoclathratiforme BU-1 6462981 YP_002018574.1 CDS Ppha_1722 NC_011060.1 1831362 1831613 R KEGG: ape:APE_0890a.1 hypothetical protein; hypothetical protein complement(1831362..1831613) Pelodictyon phaeoclathratiforme BU-1 6462980 YP_002018575.1 CDS Ppha_1723 NC_011060.1 1832032 1832358 D PFAM: protein of unknown function DUF891; KEGG: plt:Plut_0835 conserved hypothetical protein, phage-related; hypothetical protein 1832032..1832358 Pelodictyon phaeoclathratiforme BU-1 6462977 YP_002018576.1 CDS Ppha_1724 NC_011060.1 1832351 1832677 D PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_0834 transcriptional regulator, XRE family; XRE family transcriptional regulator 1832351..1832677 Pelodictyon phaeoclathratiforme BU-1 6462975 YP_002018577.1 CDS Ppha_1725 NC_011060.1 1832698 1832904 R KEGG: plt:Plut_1080 ATPase; ATPase complement(1832698..1832904) Pelodictyon phaeoclathratiforme BU-1 6462974 YP_002018578.1 CDS Ppha_1726 NC_011060.1 1833005 1834078 R KEGG: cph:Cpha266_1199 hypothetical protein; hypothetical protein complement(1833005..1834078) Pelodictyon phaeoclathratiforme BU-1 6461064 YP_002018579.1 CDS Ppha_1727 NC_011060.1 1834372 1835010 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cph:Cpha266_1198 tRNA guanosine-2'-O-methyltransferase; tRNA guanosine-2'-O-methyltransferase 1834372..1835010 Pelodictyon phaeoclathratiforme BU-1 6462972 YP_002018580.1 CDS Ppha_1728 NC_011060.1 1835039 1836088 R PFAM: ferredoxin; KEGG: cph:Cpha266_1733 ferredoxin; ferredoxin complement(1835039..1836088) Pelodictyon phaeoclathratiforme BU-1 6461083 YP_002018581.1 CDS Ppha_1729 NC_011060.1 1836202 1836744 R KEGG: cph:Cpha266_1735 hypothetical protein; hypothetical protein complement(1836202..1836744) Pelodictyon phaeoclathratiforme BU-1 6462969 YP_002018582.1 CDS Ppha_1730 NC_011060.1 1836756 1837175 R PFAM: protein of unknown function UPF0054; KEGG: cph:Cpha266_1736 protein of unknown function UPF0054; hypothetical protein complement(1836756..1837175) Pelodictyon phaeoclathratiforme BU-1 6462962 YP_002018583.1 CDS Ppha_1731 NC_011060.1 1837159 1838463 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cph:Cpha266_1737 GTP-binding protein, HSR1-related; GTP-binding proten HflX complement(1837159..1838463) Pelodictyon phaeoclathratiforme BU-1 6462961 YP_002018584.1 CDS Ppha_1732 NC_011060.1 1838675 1839607 D PFAM: Squalene/phytoene synthase; KEGG: cph:Cpha266_1738 squalene/phytoene synthase; squalene/phytoene synthase 1838675..1839607 Pelodictyon phaeoclathratiforme BU-1 6462960 YP_002018585.1 CDS lysS NC_011060.1 1839735 1841270 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1839735..1841270 Pelodictyon phaeoclathratiforme BU-1 6462950 YP_002018586.1 CDS Ppha_1734 NC_011060.1 1841275 1841697 D TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: swo:Swol_0220 nucleotidyltransferase substrate-binding protein; nucleotidyltransferase substrate binding protein 1841275..1841697 Pelodictyon phaeoclathratiforme BU-1 6462948 YP_002018587.1 CDS Ppha_1735 NC_011060.1 1841690 1842010 D PFAM: DNA polymerase beta domain protein region; KEGG: swo:Swol_0221 hypothetical protein; DNA polymerase beta domain-containing protein 1841690..1842010 Pelodictyon phaeoclathratiforme BU-1 6462945 YP_002018588.1 CDS Ppha_1736 NC_011060.1 1842115 1842345 D hypothetical protein 1842115..1842345 Pelodictyon phaeoclathratiforme BU-1 6462944 YP_002018589.1 CDS Ppha_1737 NC_011060.1 1842342 1842689 D KEGG: mar:MAE_08750 PemK-like protein; transcriptional modulator of MazE/toxin MazF 1842342..1842689 Pelodictyon phaeoclathratiforme BU-1 6462940 YP_002018590.1 CDS Ppha_1739 NC_011060.1 1843398 1843598 D KEGG: mlo:mlr2530 hypothetical protein; hypothetical protein 1843398..1843598 Pelodictyon phaeoclathratiforme BU-1 6462937 YP_002018591.1 CDS Ppha_1740 NC_011060.1 1843595 1843858 D KEGG: amr:AM1_1925 hypothetical protein; hypothetical protein 1843595..1843858 Pelodictyon phaeoclathratiforme BU-1 6462936 YP_002018592.1 CDS Ppha_1742 NC_011060.1 1844130 1844585 D KEGG: cyb:CYB_0386 hypothetical protein; hypothetical protein 1844130..1844585 Pelodictyon phaeoclathratiforme BU-1 6462932 YP_002018593.1 CDS Ppha_1743 NC_011060.1 1844582 1845016 D PFAM: protein of unknown function DUF1130; KEGG: cyb:CYB_0385 hypothetical protein; hypothetical protein 1844582..1845016 Pelodictyon phaeoclathratiforme BU-1 6462931 YP_002018594.1 CDS Ppha_1744 NC_011060.1 1845111 1845299 R KEGG: sun:SUN_0701 hypothetical protein; hypothetical protein complement(1845111..1845299) Pelodictyon phaeoclathratiforme BU-1 6462930 YP_002018595.1 CDS Ppha_1745 NC_011060.1 1845626 1845862 D KEGG: cch:Cag_0678 hypothetical protein; hypothetical protein 1845626..1845862 Pelodictyon phaeoclathratiforme BU-1 6462929 YP_002018596.1 CDS Ppha_1746 NC_011060.1 1845838 1846281 D KEGG: cph:Cpha266_2655 protein of unknown function DUF132; hypothetical protein 1845838..1846281 Pelodictyon phaeoclathratiforme BU-1 6462925 YP_002018597.1 CDS Ppha_1747 NC_011060.1 1846433 1846996 R PFAM: shikimate kinase; KEGG: csc:Csac_2240 shikimate kinase; shikimate kinase complement(1846433..1846996) Pelodictyon phaeoclathratiforme BU-1 6462920 YP_002018598.1 CDS Ppha_1748 NC_011060.1 1847028 1848041 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_1182 capsular polysaccharide biosynthesis protein I; NAD-dependent epimerase/dehydratase complement(1847028..1848041) Pelodictyon phaeoclathratiforme BU-1 6462918 YP_002018599.1 CDS Ppha_1749 NC_011060.1 1848343 1849791 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cch:Cag_1183 hypothetical protein; hypothetical protein 1848343..1849791 Pelodictyon phaeoclathratiforme BU-1 6462922 YP_002018600.1 CDS Ppha_1750 NC_011060.1 1849811 1850884 D PFAM: protein of unknown function DUF403; KEGG: cch:Cag_1184 hypothetical protein; hypothetical protein 1849811..1850884 Pelodictyon phaeoclathratiforme BU-1 6462916 YP_002018601.1 CDS Ppha_1751 NC_011060.1 1850906 1851724 D PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cch:Cag_1185 transglutaminase-like; transglutaminase domain-containing protein 1850906..1851724 Pelodictyon phaeoclathratiforme BU-1 6462915 YP_002018602.1 CDS Ppha_1753 NC_011060.1 1851966 1852988 D KEGG: cph:Cpha266_1005 hypothetical protein; hypothetical protein 1851966..1852988 Pelodictyon phaeoclathratiforme BU-1 6462911 YP_002018603.1 CDS Ppha_1754 NC_011060.1 1853162 1854229 R PFAM: Di-haem cytochrome c peroxidase; KEGG: cch:Cag_1187 cytochrome c551 peroxidase; cytochrome-c peroxidase complement(1853162..1854229) Pelodictyon phaeoclathratiforme BU-1 6462908 YP_002018604.1 CDS Ppha_1755 NC_011060.1 1854413 1855573 R PFAM: Di-haem cytochrome c peroxidase; KEGG: cph:Cpha266_1353 cytochrome-c peroxidase; cytochrome-c peroxidase complement(1854413..1855573) Pelodictyon phaeoclathratiforme BU-1 6462906 YP_002018605.1 CDS Ppha_1756 NC_011060.1 1855874 1857007 D KEGG: cph:Cpha266_1759 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1855874..1857007 Pelodictyon phaeoclathratiforme BU-1 6462905 YP_002018606.1 CDS Ppha_1757 NC_011060.1 1856994 1858289 D KEGG: cph:Cpha266_1760 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; radical SAM protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG 1856994..1858289 Pelodictyon phaeoclathratiforme BU-1 6462904 YP_002018607.1 CDS Ppha_1758 NC_011060.1 1858635 1858931 R KEGG: gsu:GSU0055 hypothetical protein; hypothetical protein complement(1858635..1858931) Pelodictyon phaeoclathratiforme BU-1 6462900 YP_002018608.1 CDS Ppha_1759 NC_011060.1 1858931 1859161 R TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cte:CT1476 hypothetical protein; addiction module protein complement(1858931..1859161) Pelodictyon phaeoclathratiforme BU-1 6462898 YP_002018609.1 CDS Ppha_1760 NC_011060.1 1859413 1860420 D KEGG: cph:Cpha266_0845 alkylhydroperoxidase like protein, AhpD family; alkylhydroperoxidase-like protein 1859413..1860420 Pelodictyon phaeoclathratiforme BU-1 6462893 YP_002018610.1 CDS Ppha_1761 NC_011060.1 1860409 1861776 R TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0312 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing); cobyrinic acid a,c-diamide synthase complement(1860409..1861776) Pelodictyon phaeoclathratiforme BU-1 6462892 YP_002018611.1 CDS Ppha_1762 NC_011060.1 1861780 1862532 R Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase complement(1861780..1862532) Pelodictyon phaeoclathratiforme BU-1 6462891 YP_002018612.1 CDS aroK NC_011060.1 1862566 1863360 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1862566..1863360 Pelodictyon phaeoclathratiforme BU-1 6462887 YP_002018613.1 CDS aroB NC_011060.1 1863376 1864473 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1863376..1864473 Pelodictyon phaeoclathratiforme BU-1 6462886 YP_002018614.1 CDS Ppha_1765 NC_011060.1 1864451 1865269 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(1864451..1865269) Pelodictyon phaeoclathratiforme BU-1 6462885 YP_002018615.1 CDS Ppha_1766 NC_011060.1 1865295 1865801 R KEGG: cph:Cpha266_0834 hypothetical protein; hypothetical protein complement(1865295..1865801) Pelodictyon phaeoclathratiforme BU-1 6462883 YP_002018616.1 CDS Ppha_1767 NC_011060.1 1865950 1868118 R PFAM: glutamine synthetase catalytic region; KEGG: cph:Cpha266_0832 glutamine synthetase, catalytic region; glutamine synthetase complement(1865950..1868118) Pelodictyon phaeoclathratiforme BU-1 6462882 YP_002018617.1 CDS Ppha_1768 NC_011060.1 1868163 1868687 R PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; KEGG: cph:Cpha266_0831 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(1868163..1868687) Pelodictyon phaeoclathratiforme BU-1 6462881 YP_002018618.1 CDS Ppha_1769 NC_011060.1 1869192 1870553 D PFAM: amine oxidase; KEGG: cph:Cpha266_0830 zeta-carotene desaturase; Carotene 7,8-desaturase 1869192..1870553 Pelodictyon phaeoclathratiforme BU-1 6462878 YP_002018619.1 CDS Ppha_1770 NC_011060.1 1870562 1871170 D KEGG: cch:Cag_1592 hypothetical protein; hypothetical protein 1870562..1871170 Pelodictyon phaeoclathratiforme BU-1 6462877 YP_002018620.1 CDS Ppha_1771 NC_011060.1 1871152 1871844 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0827 glycosyl transferase, family 2; family 2 glycosyl transferase 1871152..1871844 Pelodictyon phaeoclathratiforme BU-1 6462871 YP_002018621.1 CDS Ppha_1772 NC_011060.1 1871969 1872628 D TIGRFAM: chlorosome envelope protein H; KEGG: plt:Plut_1416 chlorosome envelope protein H; chlorosome envelope protein H 1871969..1872628 Pelodictyon phaeoclathratiforme BU-1 6462870 YP_002018622.1 CDS Ppha_1773 NC_011060.1 1872733 1873179 R KEGG: cch:Cag_1595 deoxyUTP pyrophosphatase subfamily 1; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(1872733..1873179) Pelodictyon phaeoclathratiforme BU-1 6462867 YP_002018623.1 CDS Ppha_1774 NC_011060.1 1873248 1873997 D PFAM: LmbE family protein; KEGG: cch:Cag_1596 hypothetical protein; LmbE family protein 1873248..1873997 Pelodictyon phaeoclathratiforme BU-1 6462863 YP_002018624.1 CDS Ppha_1775 NC_011060.1 1874094 1875374 D KEGG: cch:Cag_0405 hypothetical protein; hypothetical protein 1874094..1875374 Pelodictyon phaeoclathratiforme BU-1 6462861 YP_002018625.1 CDS Ppha_1776 NC_011060.1 1875470 1876342 D TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: cph:Cpha266_1037 phosphate binding protein; phosphate binding protein 1875470..1876342 Pelodictyon phaeoclathratiforme BU-1 6462860 YP_002018626.1 CDS Ppha_1777 NC_011060.1 1876508 1877806 D PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1048 pentapeptide repeat protein; pentapeptide repeat-containing protein 1876508..1877806 Pelodictyon phaeoclathratiforme BU-1 6462856 YP_002018627.1 CDS Ppha_1778 NC_011060.1 1878240 1879874 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 1878240..1879874 Pelodictyon phaeoclathratiforme BU-1 6462854 YP_002018628.1 CDS tpiA NC_011060.1 1879943 1880698 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1879943..1880698) Pelodictyon phaeoclathratiforme BU-1 6462247 YP_002018629.1 CDS Ppha_1780 NC_011060.1 1880709 1880933 R KEGG: plt:Plut_1465 hypothetical protein; hypothetical protein complement(1880709..1880933) Pelodictyon phaeoclathratiforme BU-1 6461880 YP_002018630.1 CDS greA NC_011060.1 1880967 1881446 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1880967..1881446) Pelodictyon phaeoclathratiforme BU-1 6462477 YP_002018631.1 CDS Ppha_1782 NC_011060.1 1881611 1883107 R KEGG: cch:Cag_0494 peptidase S1C, Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(1881611..1883107) Pelodictyon phaeoclathratiforme BU-1 6461948 YP_002018632.1 CDS Ppha_1783 NC_011060.1 1883163 1884659 R KEGG: cph:Cpha266_1856 anthranilate synthase, component I; TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; anthranilate synthase component I complement(1883163..1884659) Pelodictyon phaeoclathratiforme BU-1 6462546 YP_002018633.1 CDS Ppha_1784 NC_011060.1 1884789 1885217 D KEGG: cph:Cpha266_1857 hypothetical protein; hypothetical protein 1884789..1885217 Pelodictyon phaeoclathratiforme BU-1 6462426 YP_002018634.1 CDS Ppha_1785 NC_011060.1 1885211 1886041 R KEGG: cph:Cpha266_1858 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(1885211..1886041) Pelodictyon phaeoclathratiforme BU-1 6461226 YP_002018635.1 CDS Ppha_1786 NC_011060.1 1886099 1887916 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(1886099..1887916) Pelodictyon phaeoclathratiforme BU-1 6461982 YP_002018636.1 CDS Ppha_1787 NC_011060.1 1887998 1888957 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cch:Cag_0487 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1887998..1888957) Pelodictyon phaeoclathratiforme BU-1 6461283 YP_002018637.1 CDS Ppha_1788 NC_011060.1 1888954 1889520 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1888954..1889520) Pelodictyon phaeoclathratiforme BU-1 6461430 YP_002018638.1 CDS Ppha_1789 NC_011060.1 1889835 1890263 R PFAM: response regulator receiver; KEGG: cph:Cpha266_1833 PAS/PAC sensor protein; response regulator receiver protein complement(1889835..1890263) Pelodictyon phaeoclathratiforme BU-1 6462219 YP_002018639.1 CDS Ppha_1790 NC_011060.1 1890920 1892419 D KEGG: cch:Cag_0489 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 1890920..1892419 Pelodictyon phaeoclathratiforme BU-1 6462549 YP_002018640.1 CDS Ppha_1791 NC_011060.1 1892681 1892899 D hypothetical protein 1892681..1892899 Pelodictyon phaeoclathratiforme BU-1 6462326 YP_002018641.1 CDS Ppha_1792 NC_011060.1 1892899 1893159 D TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: gur:Gura_1444 addiction module toxin, Txe/YoeB family; Txe/YoeB family addiction module toxin 1892899..1893159 Pelodictyon phaeoclathratiforme BU-1 6461755 YP_002018642.1 CDS Ppha_1793 NC_011060.1 1893215 1894024 D KEGG: oan:Oant_1152 hypothetical protein; hypothetical protein 1893215..1894024 Pelodictyon phaeoclathratiforme BU-1 6462444 YP_002018643.1 CDS Ppha_1794 NC_011060.1 1894181 1898023 R KEGG: plt:Plut_0787 magnesium-chelatase, subunit H; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase; magnesium chelatase subunit H complement(1894181..1898023) Pelodictyon phaeoclathratiforme BU-1 6461166 YP_002018644.1 CDS Ppha_1795 NC_011060.1 1898224 1900080 R KEGG: cph:Cpha266_1630 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit D; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor A; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; magnesium chelatase ATPase subunit D complement(1898224..1900080) Pelodictyon phaeoclathratiforme BU-1 6462598 YP_002018645.1 CDS Ppha_1796 NC_011060.1 1900080 1901255 R KEGG: cph:Cpha266_1631 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit I; SMART: AAA ATPase; magnesium chelatase ATPase subunit I complement(1900080..1901255) Pelodictyon phaeoclathratiforme BU-1 6461994 YP_002018646.1 CDS Ppha_1797 NC_011060.1 1901386 1902810 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_1632 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(1901386..1902810) Pelodictyon phaeoclathratiforme BU-1 6462303 YP_002018647.1 CDS Ppha_1798 NC_011060.1 1902881 1903930 D KEGG: plt:Plut_0783 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1902881..1903930 Pelodictyon phaeoclathratiforme BU-1 6461534 YP_002018648.1 CDS Ppha_1799 NC_011060.1 1904175 1907627 D KEGG: plt:Plut_1093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 1904175..1907627 Pelodictyon phaeoclathratiforme BU-1 6461839 YP_002018649.1 CDS Ppha_1800 NC_011060.1 1907630 1909024 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: drm:Dred_2001 two component, sigma54 specific, transcriptional regulator, fis family; Fis family two component sigma-54 specific transcriptional regulator 1907630..1909024 Pelodictyon phaeoclathratiforme BU-1 6461944 YP_002018650.1 CDS Ppha_1801 NC_011060.1 1909165 1909509 R PFAM: Gas vesicle K; KEGG: plt:Plut_0706 hypothetical protein; gas vesicle protein K complement(1909165..1909509) Pelodictyon phaeoclathratiforme BU-1 6461767 YP_002018651.1 CDS Ppha_1802 NC_011060.1 1909512 1910261 R PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0705 hypothetical protein; gas vesicle synthesis GvpLGvpF complement(1909512..1910261) Pelodictyon phaeoclathratiforme BU-1 6461092 YP_002018652.1 CDS Ppha_1803 NC_011060.1 1910286 1910486 R PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0704 hypothetical protein; gas vesicle protein GvpA complement(1910286..1910486) Pelodictyon phaeoclathratiforme BU-1 6461602 YP_002018653.1 CDS Ppha_1804 NC_011060.1 1910488 1911288 R PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0703 hypothetical protein; gas vesicle synthesis GvpLGvpF complement(1910488..1911288) Pelodictyon phaeoclathratiforme BU-1 6461677 YP_002018654.1 CDS Ppha_1805 NC_011060.1 1911302 1911574 R KEGG: plt:Plut_0702 hypothetical protein; hypothetical protein complement(1911302..1911574) Pelodictyon phaeoclathratiforme BU-1 6462673 YP_002018655.1 CDS Ppha_1806 NC_011060.1 1911642 1911914 R PFAM: Gas vesicle G; KEGG: plt:Plut_0701 hypothetical protein; Gas vesicle G complement(1911642..1911914) Pelodictyon phaeoclathratiforme BU-1 6462421 YP_002018656.1 CDS Ppha_1807 NC_011060.1 1911880 1912656 R PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0700 hypothetical protein; gas vesicle synthesis GvpLGvpF complement(1911880..1912656) Pelodictyon phaeoclathratiforme BU-1 6463455 YP_002018657.1 CDS Ppha_1808 NC_011060.1 1912680 1913453 R PFAM: Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0699 hypothetical protein; gas vesicle synthesis GvpLGvpF complement(1912680..1913453) Pelodictyon phaeoclathratiforme BU-1 6463452 YP_002018658.1 CDS Ppha_1809 NC_011060.1 1913455 1914474 R PFAM: heat shock protein DnaJ domain protein; Gas vesicle synthesis GvpLGvpF; KEGG: plt:Plut_0698 hypothetical protein; gas vesicle synthesis GvpLGvpF complement(1913455..1914474) Pelodictyon phaeoclathratiforme BU-1 6463451 YP_002018659.1 CDS Ppha_1810 NC_011060.1 1914481 1916628 R KEGG: plt:Plut_0697 AAA ATPase, CDC48; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; SMART: AAA ATPase; ATPase AAA complement(1914481..1916628) Pelodictyon phaeoclathratiforme BU-1 6463448 YP_002018660.1 CDS Ppha_1812 NC_011060.1 1917596 1918108 R KEGG: plt:Plut_0695 hypothetical protein; hypothetical protein complement(1917596..1918108) Pelodictyon phaeoclathratiforme BU-1 6463446 YP_002018661.1 CDS Ppha_1813 NC_011060.1 1918121 1918420 R PFAM: gas vesicle protein GVPa; KEGG: plt:Plut_0694 gas vesicle synthesis protein; gas vesicle protein GvpA complement(1918121..1918420) Pelodictyon phaeoclathratiforme BU-1 6463444 YP_002018662.1 CDS Ppha_1814 NC_011060.1 1918433 1918747 R KEGG: plt:Plut_0693 hypothetical protein; hypothetical protein complement(1918433..1918747) Pelodictyon phaeoclathratiforme BU-1 6463442 YP_002018663.1 CDS Ppha_1815 NC_011060.1 1918777 1919703 R KEGG: plt:Plut_0692 ATPase; TIGRFAM: gas vesicle protein GvpN; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; gas vesicle protein GvpN complement(1918777..1919703) Pelodictyon phaeoclathratiforme BU-1 6463441 YP_002018664.1 CDS Ppha_1816 NC_011060.1 1919829 1920974 R KEGG: plt:Plut_0691 hypothetical protein; hypothetical protein complement(1919829..1920974) Pelodictyon phaeoclathratiforme BU-1 6463439 YP_002018665.1 CDS Ppha_1817 NC_011060.1 1921003 1921614 R KEGG: plt:Plut_0690 hypothetical protein; hypothetical protein complement(1921003..1921614) Pelodictyon phaeoclathratiforme BU-1 6463438 YP_002018666.1 CDS Ppha_1818 NC_011060.1 1921777 1921983 R involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA complement(1921777..1921983) Pelodictyon phaeoclathratiforme BU-1 6463436 YP_002018667.1 CDS Ppha_1819 NC_011060.1 1922036 1922242 R involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA complement(1922036..1922242) Pelodictyon phaeoclathratiforme BU-1 6463433 YP_002018668.1 CDS Ppha_1820 NC_011060.1 1922295 1922501 R involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA complement(1922295..1922501) Pelodictyon phaeoclathratiforme BU-1 6463432 YP_002018669.1 CDS Ppha_1821 NC_011060.1 1922554 1922760 R involved in formation of gas vesicle which are protein structures that contain gas involved in buoyancy; part of an operon of other gas vesicle synthesis proteins; gas vesicle synthesis protein GvpA complement(1922554..1922760) Pelodictyon phaeoclathratiforme BU-1 6463431 YP_002018670.1 CDS Ppha_1822 NC_011060.1 1923149 1923859 R PFAM: DNA alkylation repair enzyme; KEGG: cph:Cpha266_1009 hypothetical protein; DNA alkylation repair protein complement(1923149..1923859) Pelodictyon phaeoclathratiforme BU-1 6463430 YP_002018671.1 CDS Ppha_1823 NC_011060.1 1923919 1925817 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1008 transcriptional regulator, Fis family; ABC transporter-like protein complement(1923919..1925817) Pelodictyon phaeoclathratiforme BU-1 6463429 YP_002018672.1 CDS Ppha_1824 NC_011060.1 1926111 1926665 D KEGG: pvi:Cvib_1065 hypothetical protein; hypothetical protein 1926111..1926665 Pelodictyon phaeoclathratiforme BU-1 6463428 YP_002018673.1 CDS Ppha_1825 NC_011060.1 1926795 1929344 R KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(1926795..1929344) Pelodictyon phaeoclathratiforme BU-1 6463426 YP_002018674.1 CDS Ppha_1826 NC_011060.1 1929521 1930216 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0849 ATPase; ABC transporter-like protein complement(1929521..1930216) Pelodictyon phaeoclathratiforme BU-1 6463422 YP_002018675.1 CDS Ppha_1827 NC_011060.1 1930209 1930937 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_0850 ATPase; ABC transporter-like protein complement(1930209..1930937) Pelodictyon phaeoclathratiforme BU-1 6463421 YP_002018676.1 CDS Ppha_1828 NC_011060.1 1930934 1931929 R PFAM: inner-membrane translocator; KEGG: cch:Cag_0851 branched-chain amino acid ABC transporter, permease; inner-membrane translocator complement(1930934..1931929) Pelodictyon phaeoclathratiforme BU-1 6463420 YP_002018677.1 CDS Ppha_1829 NC_011060.1 1931929 1932798 R PFAM: inner-membrane translocator; KEGG: cch:Cag_0852 branched-chain amino acid ABC transporter, permease; inner-membrane translocator complement(1931929..1932798) Pelodictyon phaeoclathratiforme BU-1 6463419 YP_002018678.1 CDS Ppha_1830 NC_011060.1 1932945 1934090 R PFAM: Extracellular ligand-binding receptor; KEGG: cch:Cag_0853 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; extracellular ligand-binding receptor complement(1932945..1934090) Pelodictyon phaeoclathratiforme BU-1 6463418 YP_002018679.1 CDS Ppha_1831 NC_011060.1 1934296 1934745 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: cph:Cpha266_1350 cupin 2, conserved barrel domain protein; cupin complement(1934296..1934745) Pelodictyon phaeoclathratiforme BU-1 6463417 YP_002018680.1 CDS Ppha_1832 NC_011060.1 1935070 1936503 D KEGG: cph:Cpha266_1230 hypothetical protein; hypothetical protein 1935070..1936503 Pelodictyon phaeoclathratiforme BU-1 6463415 YP_002018681.1 CDS Ppha_1833 NC_011060.1 1936491 1937534 D KEGG: cph:Cpha266_1229 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 1936491..1937534 Pelodictyon phaeoclathratiforme BU-1 6463412 YP_002018682.1 CDS Ppha_1834 NC_011060.1 1937612 1937770 R KEGG: cch:Cag_0845 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1937612..1937770) Pelodictyon phaeoclathratiforme BU-1 6463408 YP_002018683.1 CDS Ppha_1836 NC_011060.1 1937905 1938795 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_2109 methyltransferase type 11; type 11 methyltransferase complement(1937905..1938795) Pelodictyon phaeoclathratiforme BU-1 6463405 YP_002018684.1 CDS Ppha_1837 NC_011060.1 1938846 1939277 R PFAM: thiol-disulphide oxidoreductase DCC; KEGG: cph:Cpha266_2114 thiol-disulphide oxidoreductase DCC; thiol-disulfide oxidoreductase DCC complement(1938846..1939277) Pelodictyon phaeoclathratiforme BU-1 6463404 YP_002018685.1 CDS Ppha_1838 NC_011060.1 1939395 1939538 R hypothetical protein complement(1939395..1939538) Pelodictyon phaeoclathratiforme BU-1 6463403 YP_002018686.1 CDS Ppha_1840 NC_011060.1 1939899 1940294 R PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0845 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1939899..1940294) Pelodictyon phaeoclathratiforme BU-1 6463398 YP_002018687.1 CDS Ppha_1841 NC_011060.1 1940307 1940615 R KEGG: pfl:PFL_1053 hypothetical protein; hypothetical protein complement(1940307..1940615) Pelodictyon phaeoclathratiforme BU-1 6463390 YP_002018688.1 CDS Ppha_1842 NC_011060.1 1940782 1941312 R KEGG: plu:plu3890 hypothetical protein; hypothetical protein complement(1940782..1941312) Pelodictyon phaeoclathratiforme BU-1 6463389 YP_002018689.1 CDS Ppha_1843 NC_011060.1 1941309 1941587 R PFAM: Protein of unknown function DUF1778; KEGG: plu:plu3889 hypothetical protein; hypothetical protein complement(1941309..1941587) Pelodictyon phaeoclathratiforme BU-1 6463387 YP_002018690.1 CDS Ppha_1844 NC_011060.1 1941786 1942166 D PFAM: protein of unknown function DUF1044; KEGG: plt:Plut_1817 hypothetical protein; hypothetical protein 1941786..1942166 Pelodictyon phaeoclathratiforme BU-1 6463386 YP_002018691.1 CDS Ppha_1845 NC_011060.1 1942159 1942476 D PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_1818 transcriptional regulator, XRE family; XRE family transcriptional regulator 1942159..1942476 Pelodictyon phaeoclathratiforme BU-1 6463384 YP_002018692.1 CDS Ppha_1847 NC_011060.1 1942745 1943101 R KEGG: fps:FP1227 probable transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1942745..1943101) Pelodictyon phaeoclathratiforme BU-1 6463382 YP_002018693.1 CDS Ppha_1848 NC_011060.1 1943194 1943646 R KEGG: scl:sce7684 hypothetical protein; hypothetical protein complement(1943194..1943646) Pelodictyon phaeoclathratiforme BU-1 6463378 YP_002018694.1 CDS Ppha_1849 NC_011060.1 1943643 1944911 R PFAM: SMC domain protein; KEGG: mar:MAE_39710 ATPase; SMC domain-containing protein complement(1943643..1944911) Pelodictyon phaeoclathratiforme BU-1 6463377 YP_002018695.1 CDS Ppha_1851 NC_011060.1 1945165 1945647 R PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0938 helix-turn-helix domain protein; XRE family transcriptional regulator complement(1945165..1945647) Pelodictyon phaeoclathratiforme BU-1 6463371 YP_002018696.1 CDS Ppha_1852 NC_011060.1 1945652 1946107 R KEGG: bth:BT_4036 hypothetical protein; hypothetical protein complement(1945652..1946107) Pelodictyon phaeoclathratiforme BU-1 6463370 YP_002018697.1 CDS Ppha_1854 NC_011060.1 1946344 1946652 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cph:Cpha266_1719 thioredoxin; thioredoxin complement(1946344..1946652) Pelodictyon phaeoclathratiforme BU-1 6463366 YP_002018698.1 CDS Ppha_1855 NC_011060.1 1946703 1947158 R PFAM: OsmC family protein; KEGG: cph:Cpha266_1720 OsmC family protein; OsmC family protein complement(1946703..1947158) Pelodictyon phaeoclathratiforme BU-1 6463364 YP_002018699.1 CDS Ppha_1856 NC_011060.1 1947228 1947374 D hypothetical protein 1947228..1947374 Pelodictyon phaeoclathratiforme BU-1 6463363 YP_002018700.1 CDS Ppha_1857 NC_011060.1 1947371 1947820 D PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cch:Cag_0373 6-pyruvoyltetrahydropterin synthase; hypothetical protein 1947371..1947820 Pelodictyon phaeoclathratiforme BU-1 6463362 YP_002018701.1 CDS folE NC_011060.1 1947795 1948451 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1947795..1948451 Pelodictyon phaeoclathratiforme BU-1 6463359 YP_002018702.1 CDS Ppha_1859 NC_011060.1 1948522 1949106 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: plt:Plut_1449 peptidase M52, hydrogen uptake protein; hydrogenase maturation protease complement(1948522..1949106) Pelodictyon phaeoclathratiforme BU-1 6463355 YP_002018703.1 CDS Ppha_1860 NC_011060.1 1949107 1949790 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: cph:Cpha266_0974 Ni/Fe-hydrogenase, b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(1949107..1949790) Pelodictyon phaeoclathratiforme BU-1 6463353 YP_002018704.1 CDS Ppha_1861 NC_011060.1 1949804 1951522 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: plt:Plut_1447 hydrogenase large chain; nickel-dependent hydrogenase large subunit complement(1949804..1951522) Pelodictyon phaeoclathratiforme BU-1 6463351 YP_002018705.1 CDS Ppha_1862 NC_011060.1 1951538 1952626 R KEGG: cph:Cpha266_0972 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA complement(1951538..1952626) Pelodictyon phaeoclathratiforme BU-1 6463350 YP_002018706.1 CDS Ppha_1863 NC_011060.1 1952831 1954372 R KEGG: plt:Plut_0753 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N complement(1952831..1954372) Pelodictyon phaeoclathratiforme BU-1 6463346 YP_002018707.1 CDS Ppha_1864 NC_011060.1 1954416 1956050 R KEGG: cph:Cpha266_0970 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(1954416..1956050) Pelodictyon phaeoclathratiforme BU-1 6463344 YP_002018708.1 CDS Ppha_1865 NC_011060.1 1956092 1958368 R KEGG: cch:Cag_0642 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(1956092..1958368) Pelodictyon phaeoclathratiforme BU-1 6463339 YP_002018709.1 CDS Ppha_1866 NC_011060.1 1958424 1958741 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cch:Cag_0641 NADH dehydrogenase I subunit 4L; NADH-ubiquinone oxidoreductase chain 4L complement(1958424..1958741) Pelodictyon phaeoclathratiforme BU-1 6463338 YP_002018710.1 CDS Ppha_1867 NC_011060.1 1958765 1959277 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: pvi:Cvib_1087 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(1958765..1959277) Pelodictyon phaeoclathratiforme BU-1 6463336 YP_002018711.1 CDS Ppha_1868 NC_011060.1 1959282 1959926 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0639 NADH dehydrogenase I, 23 kDa subunit; 4Fe-4S ferredoxin complement(1959282..1959926) Pelodictyon phaeoclathratiforme BU-1 6463335 YP_002018712.1 CDS Ppha_1869 NC_011060.1 1959972 1961090 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: pvi:Cvib_1089 respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) complement(1959972..1961090) Pelodictyon phaeoclathratiforme BU-1 6463332 YP_002018713.1 CDS Ppha_1870 NC_011060.1 1961087 1962289 R PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: plt:Plut_0746 NADH dehydrogenase (ubiquinone); NADH dehydrogenase (quinone) complement(1961087..1962289) Pelodictyon phaeoclathratiforme BU-1 6463328 YP_002018714.1 CDS Ppha_1871 NC_011060.1 1962321 1962839 R TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: pvi:Cvib_1091 NADH (or F420H2) dehydrogenase, subunit C; NADH (or F420H2) dehydrogenase subunit C complement(1962321..1962839) Pelodictyon phaeoclathratiforme BU-1 6463325 YP_002018715.1 CDS Ppha_1872 NC_011060.1 1962865 1963434 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(1962865..1963434) Pelodictyon phaeoclathratiforme BU-1 6463324 YP_002018716.1 CDS Ppha_1873 NC_011060.1 1963463 1963894 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: plt:Plut_0743 NADH dehydrogenase I, subunit 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(1963463..1963894) Pelodictyon phaeoclathratiforme BU-1 6463322 YP_002018717.1 CDS Ppha_1874 NC_011060.1 1964106 1964357 R KEGG: cph:Cpha266_0960 hypothetical protein; hypothetical protein complement(1964106..1964357) Pelodictyon phaeoclathratiforme BU-1 6463320 YP_002018718.1 CDS Ppha_1875 NC_011060.1 1964364 1964969 R PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0959 hypothetical protein-containing protein; hypothetical protein complement(1964364..1964969) Pelodictyon phaeoclathratiforme BU-1 6463316 YP_002018719.1 CDS Ppha_1876 NC_011060.1 1964982 1966031 R PFAM: ferrochelatase; KEGG: cph:Cpha266_0958 ferrochelatase; ferrochelatase complement(1964982..1966031) Pelodictyon phaeoclathratiforme BU-1 6463315 YP_002018720.1 CDS Ppha_1877 NC_011060.1 1966028 1966621 R KEGG: cph:Cpha266_0957 hypothetical protein; hypothetical protein complement(1966028..1966621) Pelodictyon phaeoclathratiforme BU-1 6463314 YP_002018721.1 CDS Ppha_1878 NC_011060.1 1966956 1967474 D PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0956 histidine triad (HIT) protein; histidine triad (HIT) protein 1966956..1967474 Pelodictyon phaeoclathratiforme BU-1 6463304 YP_002018722.1 CDS Ppha_1879 NC_011060.1 1967488 1968432 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0955 methyltransferase type 12; type 11 methyltransferase 1967488..1968432 Pelodictyon phaeoclathratiforme BU-1 6463297 YP_002018723.1 CDS Ppha_1880 NC_011060.1 1968596 1969522 R PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit complement(1968596..1969522) Pelodictyon phaeoclathratiforme BU-1 6463296 YP_002018724.1 CDS Ppha_1881 NC_011060.1 1969519 1969812 R PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1969519..1969812) Pelodictyon phaeoclathratiforme BU-1 6463285 YP_002018725.1 CDS Ppha_1882 NC_011060.1 1969923 1970426 R KEGG: sus:Acid_1150 hypothetical protein; hypothetical protein complement(1969923..1970426) Pelodictyon phaeoclathratiforme BU-1 6463282 YP_002018726.1 CDS Ppha_1883 NC_011060.1 1970423 1971532 R KEGG: sus:Acid_1151 hypothetical protein; hypothetical protein complement(1970423..1971532) Pelodictyon phaeoclathratiforme BU-1 6463281 YP_002018727.1 CDS Ppha_1884 NC_011060.1 1971661 1973112 R PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein; outer membrane efflux protein complement(1971661..1973112) Pelodictyon phaeoclathratiforme BU-1 6463274 YP_002018728.1 CDS Ppha_1885 NC_011060.1 1973128 1974471 R PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0953 recombination factor protein RarA; recombination factor protein RarA complement(1973128..1974471) Pelodictyon phaeoclathratiforme BU-1 6463270 YP_002018729.1 CDS Ppha_1886 NC_011060.1 1974472 1975128 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(1974472..1975128) Pelodictyon phaeoclathratiforme BU-1 6463269 YP_002018730.1 CDS Ppha_1887 NC_011060.1 1975204 1977183 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cph:Cpha266_0951 alpha amylase, catalytic region; alpha amylase catalytic protein complement(1975204..1977183) Pelodictyon phaeoclathratiforme BU-1 6463267 YP_002018731.1 CDS tpx NC_011060.1 1977207 1977707 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(1977207..1977707) Pelodictyon phaeoclathratiforme BU-1 6463266 YP_002018732.1 CDS Ppha_1889 NC_011060.1 1977816 1978268 R PFAM: DoxX family protein; KEGG: pvi:Cvib_1104 DoxX family protein; DoxX family protein complement(1977816..1978268) Pelodictyon phaeoclathratiforme BU-1 6463265 YP_002018733.1 CDS Ppha_1890 NC_011060.1 1978309 1979409 R KEGG: cph:Cpha266_0944 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD complement(1978309..1979409) Pelodictyon phaeoclathratiforme BU-1 6463264 YP_002018734.1 CDS Ppha_1891 NC_011060.1 1979412 1979945 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: plt:Plut_0726 deoxycytidylate deaminase; zinc-binding CMP/dCMP deaminase complement(1979412..1979945) Pelodictyon phaeoclathratiforme BU-1 6463263 YP_002018735.1 CDS Ppha_1892 NC_011060.1 1980037 1981677 D PFAM: protein of unknown function DUF814; KEGG: cph:Cpha266_0942 protein of unknown function DUF814; hypothetical protein 1980037..1981677 Pelodictyon phaeoclathratiforme BU-1 6463259 YP_002018736.1 CDS Ppha_1893 NC_011060.1 1981661 1982071 R PFAM: UspA domain protein; KEGG: cte:CT1011 universal stress protein family; UspA domain-containing protein complement(1981661..1982071) Pelodictyon phaeoclathratiforme BU-1 6463257 YP_002018737.1 CDS Ppha_1894 NC_011060.1 1982073 1983317 R PFAM: natural resistance-associated macrophage protein; KEGG: cte:CT1010 natural resistance-associated macrophage protein family protein; natural resistance-associated macrophage protein complement(1982073..1983317) Pelodictyon phaeoclathratiforme BU-1 6463255 YP_002018738.1 CDS Ppha_1895 NC_011060.1 1983317 1983868 R PFAM: NADPH-dependent FMN reductase; KEGG: har:HEAR1499 conserved hypothetical protein, NADPH-dependent FMN reductase IPR005025; NADPH-dependent FMN reductase complement(1983317..1983868) Pelodictyon phaeoclathratiforme BU-1 6463253 YP_002018739.1 CDS Ppha_1896 NC_011060.1 1983901 1984845 R KEGG: cph:Cpha266_0169 hypothetical protein; hypothetical protein complement(1983901..1984845) Pelodictyon phaeoclathratiforme BU-1 6463250 YP_002018740.1 CDS Ppha_1900 NC_011060.1 1987602 1987994 D PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0621 cytosolic long-chain acyl-CoA thioester hydrolase family protein; thioesterase superfamily protein 1987602..1987994 Pelodictyon phaeoclathratiforme BU-1 6463243 YP_002018741.1 CDS Ppha_1901 NC_011060.1 1988017 1989342 R PFAM: permease YjgP/YjgQ family protein; KEGG: pvi:Cvib_1109 permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(1988017..1989342) Pelodictyon phaeoclathratiforme BU-1 6463242 YP_002018742.1 CDS Ppha_1902 NC_011060.1 1989832 1990425 R KEGG: cph:Cpha266_1944 Legionella vir region protein; hypothetical protein complement(1989832..1990425) Pelodictyon phaeoclathratiforme BU-1 6463239 YP_002018743.1 CDS Ppha_1903 NC_011060.1 1991036 1991476 D KEGG: mex:Mext_1573 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system; hypothetical protein 1991036..1991476 Pelodictyon phaeoclathratiforme BU-1 6463235 YP_002018744.1 CDS Ppha_1904 NC_011060.1 1991457 1991747 D KEGG: cph:Cpha266_1282 DNA-binding protein; DNA-binding protein 1991457..1991747 Pelodictyon phaeoclathratiforme BU-1 6463232 YP_002018745.1 CDS Ppha_1905 NC_011060.1 1991922 1992119 D hypothetical protein 1991922..1992119 Pelodictyon phaeoclathratiforme BU-1 6463230 YP_002018746.1 CDS Ppha_1906 NC_011060.1 1992347 1993063 D PFAM: glutamine amidotransferase class-I; KEGG: pvi:Cvib_0576 glutamine amidotransferase class-I; glutamine amidotransferase 1992347..1993063 Pelodictyon phaeoclathratiforme BU-1 6463228 YP_002018747.1 CDS Ppha_1907 NC_011060.1 1993077 1993391 D KEGG: cch:Cag_0876 DNA photolyase, class 2; DNA photolyase, class 2 1993077..1993391 Pelodictyon phaeoclathratiforme BU-1 6463227 YP_002018748.1 CDS Ppha_1908 NC_011060.1 1993458 1995017 R PFAM: OmpA/MotB domain protein; KEGG: pau:PA14_31620 ABC-type periplasmic phosphate-binding protein; OmpA/MotB domain-containing protein complement(1993458..1995017) Pelodictyon phaeoclathratiforme BU-1 6463224 YP_002018749.1 CDS Ppha_1909 NC_011060.1 1995040 1997898 R KEGG: pna:Pnap_3261 hypothetical protein; hypothetical protein complement(1995040..1997898) Pelodictyon phaeoclathratiforme BU-1 6463218 YP_002018750.1 CDS Ppha_1911 NC_011060.1 2000069 2002381 R KEGG: cph:Cpha266_1962 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; ribonuclease R complement(2000069..2002381) Pelodictyon phaeoclathratiforme BU-1 6463214 YP_002018751.1 CDS Ppha_1912 NC_011060.1 2002819 2003304 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1911 uncharacterized protein UPF0114; hypothetical protein 2002819..2003304 Pelodictyon phaeoclathratiforme BU-1 6463211 YP_002018752.1 CDS Ppha_1913 NC_011060.1 2003323 2004450 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: plt:Plut_1521 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA complement(2003323..2004450) Pelodictyon phaeoclathratiforme BU-1 6463209 YP_002018753.1 CDS Ppha_1914 NC_011060.1 2004498 2006885 R PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: plt:Plut_1522 phosphoketolase; phosphoketolase complement(2004498..2006885) Pelodictyon phaeoclathratiforme BU-1 6463207 YP_002018754.1 CDS Ppha_1915 NC_011060.1 2006928 2008127 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cte:CT1525 acetate kinase; acetate kinase complement(2006928..2008127) Pelodictyon phaeoclathratiforme BU-1 6463205 YP_002018755.1 CDS Ppha_1916 NC_011060.1 2008964 2009278 R PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0914 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2008964..2009278) Pelodictyon phaeoclathratiforme BU-1 6463204 YP_002018756.1 CDS Ppha_1917 NC_011060.1 2009275 2009700 R KEGG: cch:Cag_0913 hypothetical protein; hypothetical protein complement(2009275..2009700) Pelodictyon phaeoclathratiforme BU-1 6463203 YP_002018757.1 CDS Ppha_1918 NC_011060.1 2009744 2010586 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1156 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2009744..2010586) Pelodictyon phaeoclathratiforme BU-1 6463200 YP_002018758.1 CDS Ppha_1919 NC_011060.1 2011098 2012225 D TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; KEGG: cph:Cpha266_1918 homocitrate synthase; homocitrate synthase 2011098..2012225 Pelodictyon phaeoclathratiforme BU-1 6463197 YP_002018759.1 CDS Ppha_1920 NC_011060.1 2012242 2013873 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_1919 DNA-binding protein fis / transcriptional regulator, Fis family; NifA subfamily transcriptional regulator 2012242..2013873 Pelodictyon phaeoclathratiforme BU-1 6463196 YP_002018760.1 CDS Ppha_1921 NC_011060.1 2013902 2014924 R PFAM: cell shape determining protein MreB/Mrl; KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl; rod shape-determining protein MreB complement(2013902..2014924) Pelodictyon phaeoclathratiforme BU-1 6463194 YP_002018761.1 CDS Ppha_1922 NC_011060.1 2015223 2016703 R hypothetical protein complement(join(2015223..2016233,2016233..2016703)) Pelodictyon phaeoclathratiforme BU-1 6463193 YP_002018762.1 CDS Ppha_1923 NC_011060.1 2016897 2017835 R PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase; aldo/keto reductase complement(2016897..2017835) Pelodictyon phaeoclathratiforme BU-1 6463192 YP_002018763.1 CDS Ppha_1924 NC_011060.1 2018009 2018413 R KEGG: mar:MAE_05060 type I site-specific deoxyribonuclease; type I site-specific deoxyribonuclease complement(2018009..2018413) Pelodictyon phaeoclathratiforme BU-1 6463188 YP_002018764.1 CDS Ppha_1925 NC_011060.1 2018816 2019136 R KEGG: maq:Maqu_2675 hypothetical protein; hypothetical protein complement(2018816..2019136) Pelodictyon phaeoclathratiforme BU-1 6463185 YP_002018765.1 CDS Ppha_1926 NC_011060.1 2019111 2019410 R KEGG: syf:Synpcc7942_0410 hypothetical protein; hypothetical protein complement(2019111..2019410) Pelodictyon phaeoclathratiforme BU-1 6463184 YP_002018766.1 CDS Ppha_1928 NC_011060.1 2020276 2020611 R KEGG: mhu:Mhun_2432 hypothetical protein; hypothetical protein complement(2020276..2020611) Pelodictyon phaeoclathratiforme BU-1 6463178 YP_002018767.1 CDS Ppha_1932 NC_011060.1 2022043 2022318 D PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_0650 transcriptional regulator, XRE family; XRE family transcriptional regulator 2022043..2022318 Pelodictyon phaeoclathratiforme BU-1 6463162 YP_002018768.1 CDS Ppha_1933 NC_011060.1 2022344 2022610 R KEGG: cch:Cag_1502 hypothetical protein; hypothetical protein complement(2022344..2022610) Pelodictyon phaeoclathratiforme BU-1 6463158 YP_002018769.1 CDS Ppha_1934 NC_011060.1 2022786 2023025 D KEGG: cau:Caur_3708 hypothetical protein; hypothetical protein 2022786..2023025 Pelodictyon phaeoclathratiforme BU-1 6463157 YP_002018770.1 CDS Ppha_1935 NC_011060.1 2023006 2023278 D KEGG: cch:Cag_1231 hypothetical protein; hypothetical protein 2023006..2023278 Pelodictyon phaeoclathratiforme BU-1 6463153 YP_002018771.1 CDS Ppha_1936 NC_011060.1 2023327 2023677 R KEGG: cph:Cpha266_1921 hypothetical protein; hypothetical protein complement(2023327..2023677) Pelodictyon phaeoclathratiforme BU-1 6463150 YP_002018772.1 CDS Ppha_1937 NC_011060.1 2023791 2024042 R hypothetical protein complement(2023791..2024042) Pelodictyon phaeoclathratiforme BU-1 6463149 YP_002018773.1 CDS Ppha_1939 NC_011060.1 2024923 2026623 R PFAM: glycoside hydrolase family 16; SMART: TIR protein; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; glycoside hydrolase family protein complement(2024923..2026623) Pelodictyon phaeoclathratiforme BU-1 6463141 YP_002018774.1 CDS Ppha_1940 NC_011060.1 2026658 2027266 R KEGG: cph:Cpha266_0897 hypothetical protein; hypothetical protein complement(2026658..2027266) Pelodictyon phaeoclathratiforme BU-1 6463138 YP_002018775.1 CDS Ppha_1941 NC_011060.1 2027361 2028227 R KEGG: rbo:A1I_02975 hypothetical protein; hypothetical protein complement(2027361..2028227) Pelodictyon phaeoclathratiforme BU-1 6463136 YP_002018776.1 CDS Ppha_1942 NC_011060.1 2028547 2030100 R PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0900 protein of unknown function DUF323; hypothetical protein complement(2028547..2030100) Pelodictyon phaeoclathratiforme BU-1 6463135 YP_002018777.1 CDS Ppha_1944 NC_011060.1 2030689 2033178 R PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0900 protein of unknown function DUF323; hypothetical protein complement(2030689..2033178) Pelodictyon phaeoclathratiforme BU-1 6463128 YP_002018778.1 CDS Ppha_1945 NC_011060.1 2033181 2034263 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_0899 ATPase associated with various cellular activities, AAA_5; ATPase complement(2033181..2034263) Pelodictyon phaeoclathratiforme BU-1 6463127 YP_002018779.1 CDS Ppha_1946 NC_011060.1 2034279 2035199 R KEGG: cph:Cpha266_0898 hypothetical protein; hypothetical protein complement(2034279..2035199) Pelodictyon phaeoclathratiforme BU-1 6463125 YP_002018780.1 CDS Ppha_1947 NC_011060.1 2035221 2036120 R KEGG: rbo:A1I_02975 hypothetical protein; hypothetical protein complement(2035221..2036120) Pelodictyon phaeoclathratiforme BU-1 6463124 YP_002018781.1 CDS Ppha_1948 NC_011060.1 2036534 2036758 R hypothetical protein complement(2036534..2036758) Pelodictyon phaeoclathratiforme BU-1 6463121 YP_002018782.1 CDS nifH NC_011060.1 2036852 2037676 D nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; nitrogenase reductase 2036852..2037676 Pelodictyon phaeoclathratiforme BU-1 6463120 YP_002018783.1 CDS Ppha_1950 NC_011060.1 2037695 2038051 D PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1344 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2037695..2038051 Pelodictyon phaeoclathratiforme BU-1 6463119 YP_002018784.1 CDS Ppha_1951 NC_011060.1 2038052 2038429 D PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT1535 nitrogen regulatory protein, P-II family; nitrogen regulatory protein P-II 2038052..2038429 Pelodictyon phaeoclathratiforme BU-1 6463112 YP_002018785.1 CDS Ppha_1952 NC_011060.1 2038466 2040100 D KEGG: cph:Cpha266_0741 nitrogenase molybdenum-iron protein alpha chain; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit alpha 2038466..2040100 Pelodictyon phaeoclathratiforme BU-1 6463080 YP_002018786.1 CDS Ppha_1953 NC_011060.1 2040127 2041509 D KEGG: cph:Cpha266_0740 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase molybdenum-iron protein subunit beta 2040127..2041509 Pelodictyon phaeoclathratiforme BU-1 6463077 YP_002018787.1 CDS Ppha_1954 NC_011060.1 2041617 2042978 D KEGG: cch:Cag_1249 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1; nitrogenase MoFe cofactor biosynthesis protein NifE 2041617..2042978 Pelodictyon phaeoclathratiforme BU-1 6463076 YP_002018788.1 CDS Ppha_1955 NC_011060.1 2042975 2044327 D PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_0738 nitrogenase; nitrogenase 2042975..2044327 Pelodictyon phaeoclathratiforme BU-1 6463074 YP_002018789.1 CDS Ppha_1956 NC_011060.1 2044340 2045611 D KEGG: cph:Cpha266_0737 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; nitrogenase cofactor biosynthesis protein NifB 2044340..2045611 Pelodictyon phaeoclathratiforme BU-1 6463072 YP_002018790.1 CDS Ppha_1957 NC_011060.1 2045701 2046009 D KEGG: cph:Cpha266_0736 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 2045701..2046009 Pelodictyon phaeoclathratiforme BU-1 6463069 YP_002018791.1 CDS Ppha_1958 NC_011060.1 2046067 2046234 R hypothetical protein complement(2046067..2046234) Pelodictyon phaeoclathratiforme BU-1 6463067 YP_002018792.1 CDS Ppha_1959 NC_011060.1 2046338 2047504 D KEGG: dol:Dole_0644 hypothetical protein; hypothetical protein 2046338..2047504 Pelodictyon phaeoclathratiforme BU-1 6463066 YP_002018793.1 CDS Ppha_1960 NC_011060.1 2047695 2048222 D KEGG: cte:CT1002 hypothetical protein; hypothetical protein 2047695..2048222 Pelodictyon phaeoclathratiforme BU-1 6463061 YP_002018794.1 CDS Ppha_1961 NC_011060.1 2048212 2048628 D KEGG: cph:Cpha266_1572 hypothetical protein; hypothetical protein 2048212..2048628 Pelodictyon phaeoclathratiforme BU-1 6463059 YP_002018795.1 CDS Ppha_1962 NC_011060.1 2048756 2049631 R metalloprotease; heat shock protein HtpX complement(2048756..2049631) Pelodictyon phaeoclathratiforme BU-1 6463051 YP_002018796.1 CDS Ppha_1963 NC_011060.1 2050220 2051827 D KEGG: pvi:Cvib_0760 cytochrome c family protein; cytochrome c family protein 2050220..2051827 Pelodictyon phaeoclathratiforme BU-1 6463050 YP_002018797.1 CDS Ppha_1964 NC_011060.1 2051824 2052429 D PFAM: cytochrome B561; KEGG: plt:Plut_1198 hydrogenase, b-type cytochrome subunit; cytochrome B561 2051824..2052429 Pelodictyon phaeoclathratiforme BU-1 6463043 YP_002018798.1 CDS Ppha_1965 NC_011060.1 2052480 2052740 D KEGG: cph:Cpha266_2106 hypothetical protein; hypothetical protein 2052480..2052740 Pelodictyon phaeoclathratiforme BU-1 6463040 YP_002018799.1 CDS Ppha_1968 NC_011060.1 2053334 2053750 D KEGG: plt:Plut_0716 hypothetical protein; hypothetical protein 2053334..2053750 Pelodictyon phaeoclathratiforme BU-1 6463031 YP_002018800.1 CDS Ppha_1969 NC_011060.1 2053740 2054630 D PFAM: Domain of unknown function DUF1814; KEGG: plt:Plut_0717 hypothetical protein; hypothetical protein 2053740..2054630 Pelodictyon phaeoclathratiforme BU-1 6463028 YP_002018801.1 CDS Ppha_1970 NC_011060.1 2055111 2055509 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: cch:Cag_1938 Sel1-like repeat; Sel1 domain-containing protein repeat-containing protein complement(2055111..2055509) Pelodictyon phaeoclathratiforme BU-1 6463027 YP_002018802.1 CDS Ppha_1971 NC_011060.1 2055634 2055984 R KEGG: cph:Cpha266_1695 hypothetical protein; hypothetical protein complement(2055634..2055984) Pelodictyon phaeoclathratiforme BU-1 6463026 YP_002018803.1 CDS Ppha_1972 NC_011060.1 2056106 2057155 R PFAM: filamentation induced by cAMP protein Fic; KEGG: net:Neut_2415 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic complement(2056106..2057155) Pelodictyon phaeoclathratiforme BU-1 6463025 YP_002018804.1 CDS Ppha_1975 NC_011060.1 2057866 2058225 D PFAM: hypothetical protein-containing protein; hypothetical protein; KEGG: cte:CT1461 kinesin light chain-related protein; hypothetical protein 2057866..2058225 Pelodictyon phaeoclathratiforme BU-1 6463016 YP_002018805.1 CDS Ppha_1976 NC_011060.1 2058401 2059360 R PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_1490 protein of unknown function DUF323; hypothetical protein complement(2058401..2059360) Pelodictyon phaeoclathratiforme BU-1 6463014 YP_002018806.1 CDS Ppha_1977 NC_011060.1 2059386 2060380 R KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein complement(join(2059386..2059949,2059949..2060380)) Pelodictyon phaeoclathratiforme BU-1 6463013 YP_002018807.1 CDS Ppha_1978 NC_011060.1 2060437 2061729 R KEGG: cph:Cpha266_1490 protein of unknown function DUF323; hypothetical protein complement(2060437..2061729) Pelodictyon phaeoclathratiforme BU-1 6463012 YP_002018808.1 CDS Ppha_1979 NC_011060.1 2061822 2064512 R PFAM: type III restriction protein res subunit; KEGG: mca:MCA0026 type III restriction-modification system, R subunit; type III restriction protein res subunit complement(2061822..2064512) Pelodictyon phaeoclathratiforme BU-1 6463011 YP_002018809.1 CDS Ppha_1980 NC_011060.1 2064594 2066237 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: btr:Btr_1180 methyltransferase; DNA methylase N-4/N-6 domain-containing protein complement(2064594..2066237) Pelodictyon phaeoclathratiforme BU-1 6463010 YP_002018810.1 CDS Ppha_1981 NC_011060.1 2066363 2066572 R hypothetical protein complement(2066363..2066572) Pelodictyon phaeoclathratiforme BU-1 6463007 YP_002018811.1 CDS Ppha_1982 NC_011060.1 2066623 2066973 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: cph:Cpha266_1951 plasmid maintenance system antidote protein, XRE family; XRE family plasmid maintenance system antidote protein complement(2066623..2066973) Pelodictyon phaeoclathratiforme BU-1 6463006 YP_002018812.1 CDS Ppha_1983 NC_011060.1 2066985 2069885 R PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1953 helicase domain protein; SNF2-like protein complement(2066985..2069885) Pelodictyon phaeoclathratiforme BU-1 6463004 YP_002018813.1 CDS Ppha_1984 NC_011060.1 2069955 2070110 R hypothetical protein complement(2069955..2070110) Pelodictyon phaeoclathratiforme BU-1 6463003 YP_002018814.1 CDS Ppha_1985 NC_011060.1 2070148 2072100 R KEGG: plt:Plut_1351 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(2070148..2072100) Pelodictyon phaeoclathratiforme BU-1 6463002 YP_002018815.1 CDS Ppha_1986 NC_011060.1 2072357 2073166 D TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: cph:Cpha266_0735 transcriptional regulator, ModE family; ModE family transcriptional regulator 2072357..2073166 Pelodictyon phaeoclathratiforme BU-1 6463000 YP_002018816.1 CDS Ppha_1987 NC_011060.1 2073373 2074251 R TIGRFAM: TonB family protein; KEGG: plt:Plut_1585 TonB-like; TonB family protein complement(2073373..2074251) Pelodictyon phaeoclathratiforme BU-1 6462998 YP_002018817.1 CDS Ppha_1988 NC_011060.1 2074257 2075252 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1755 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2074257..2075252) Pelodictyon phaeoclathratiforme BU-1 6462996 YP_002018818.1 CDS Ppha_1989 NC_011060.1 2075249 2075947 R PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1756 hypothetical protein; cobalamin synthesis protein P47K complement(2075249..2075947) Pelodictyon phaeoclathratiforme BU-1 6462994 YP_002018819.1 CDS Ppha_1990 NC_011060.1 2075960 2077015 R KEGG: cte:CT1757 hypothetical protein; hypothetical protein complement(2075960..2077015) Pelodictyon phaeoclathratiforme BU-1 6462992 YP_002018820.1 CDS Ppha_1991 NC_011060.1 2077048 2078181 R PFAM: periplasmic binding protein; KEGG: cph:Cpha266_0448 periplasmic binding protein; periplasmic binding protein complement(2077048..2078181) Pelodictyon phaeoclathratiforme BU-1 6462991 YP_002018821.1 CDS Ppha_1992 NC_011060.1 2078270 2080333 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sat:SYN_01058 TonB dependent receptor family; TonB-dependent receptor plug complement(2078270..2080333) Pelodictyon phaeoclathratiforme BU-1 6462990 YP_002018822.1 CDS Ppha_1993 NC_011060.1 2080335 2081144 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0446 ABC transporter related; ABC transporter-like protein complement(2080335..2081144) Pelodictyon phaeoclathratiforme BU-1 6462989 YP_002018823.1 CDS Ppha_1994 NC_011060.1 2081144 2082139 R PFAM: transport system permease; KEGG: cph:Cpha266_0445 transport system permease; transport system permease complement(2081144..2082139) Pelodictyon phaeoclathratiforme BU-1 6462988 YP_002018824.1 CDS Ppha_1995 NC_011060.1 2082527 2083396 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0438 ABC transporter related; ABC transporter-like protein complement(2082527..2083396) Pelodictyon phaeoclathratiforme BU-1 6462987 YP_002018825.1 CDS Ppha_1996 NC_011060.1 2083393 2083824 R PFAM: TOBE domain protein; KEGG: cph:Cpha266_0439 TOBE domain protein; TOBE domain-containing protein complement(2083393..2083824) Pelodictyon phaeoclathratiforme BU-1 6462984 YP_002018826.1 CDS Ppha_1997 NC_011060.1 2084246 2086471 D KEGG: cph:Cpha266_0440 TonB-dependent receptor; TonB-dependent receptor 2084246..2086471 Pelodictyon phaeoclathratiforme BU-1 6462979 YP_002018827.1 CDS Ppha_1998 NC_011060.1 2086575 2087300 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: cph:Cpha266_0441 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter periplasmic molybdate-binding protein 2086575..2087300 Pelodictyon phaeoclathratiforme BU-1 6462978 YP_002018828.1 CDS Ppha_1999 NC_011060.1 2087300 2087980 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_0442 transcriptional regulator, Fis family; binding-protein-dependent transport system inner membrane protein 2087300..2087980 Pelodictyon phaeoclathratiforme BU-1 6462973 YP_002018829.1 CDS Ppha_2000 NC_011060.1 2088323 2089276 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: plt:Plut_1551 cysteine synthase K/M/A; cysteine synthase A 2088323..2089276 Pelodictyon phaeoclathratiforme BU-1 6462971 YP_002018830.1 CDS Ppha_2001 NC_011060.1 2089589 2090725 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cph:Cpha266_0732 cystathionine gamma-synthase; cystathionine gamma-synthase 2089589..2090725 Pelodictyon phaeoclathratiforme BU-1 6462966 YP_002018831.1 CDS Ppha_2002 NC_011060.1 2090890 2091150 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cph:Cpha266_0731 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 2090890..2091150 Pelodictyon phaeoclathratiforme BU-1 6462965 YP_002018832.1 CDS thiG NC_011060.1 2091166 2091945 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2091166..2091945 Pelodictyon phaeoclathratiforme BU-1 6462963 YP_002018833.1 CDS thiH NC_011060.1 2091942 2093042 D in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2091942..2093042 Pelodictyon phaeoclathratiforme BU-1 6462958 YP_002018834.1 CDS Ppha_2005 NC_011060.1 2093033 2093782 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: cph:Cpha266_0728 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 2093033..2093782 Pelodictyon phaeoclathratiforme BU-1 6462957 YP_002018835.1 CDS Ppha_2006 NC_011060.1 2093813 2094499 D KEGG: gfo:GFO_1511 conserved hypothetical protein, membrane; hypothetical protein 2093813..2094499 Pelodictyon phaeoclathratiforme BU-1 6462955 YP_002018836.1 CDS Ppha_2007 NC_011060.1 2094639 2096006 D KEGG: cch:Cag_0872 hypothetical protein; hypothetical protein 2094639..2096006 Pelodictyon phaeoclathratiforme BU-1 6462953 YP_002018837.1 CDS Ppha_2008 NC_011060.1 2096003 2098195 D PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0873 hypothetical protein; hypothetical protein 2096003..2098195 Pelodictyon phaeoclathratiforme BU-1 6462952 YP_002018838.1 CDS Ppha_2009 NC_011060.1 2098242 2098919 R KEGG: rso:RS01674 probable transmembrane protein; hypothetical protein complement(2098242..2098919) Pelodictyon phaeoclathratiforme BU-1 6462951 YP_002018839.1 CDS sucA NC_011060.1 2099255 2102083 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2099255..2102083 Pelodictyon phaeoclathratiforme BU-1 6462949 YP_002018840.1 CDS Ppha_2011 NC_011060.1 2102093 2103370 D TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: reu:Reut_A2046 dihydrolipoamide acetyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2102093..2103370 Pelodictyon phaeoclathratiforme BU-1 6462947 YP_002018841.1 CDS Ppha_2012 NC_011060.1 2103386 2104822 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc1271 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2103386..2104822 Pelodictyon phaeoclathratiforme BU-1 6462946 YP_002018842.1 CDS Ppha_2014 NC_011060.1 2105440 2106434 D KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein join(2105440..2105871,2105871..2106434) Pelodictyon phaeoclathratiforme BU-1 6462939 YP_002018843.1 CDS Ppha_2015 NC_011060.1 2106539 2107402 R PFAM: inner-membrane translocator; KEGG: amt:Amet_4117 inner-membrane translocator; inner-membrane translocator complement(2106539..2107402) Pelodictyon phaeoclathratiforme BU-1 6462935 YP_002018844.1 CDS Ppha_2016 NC_011060.1 2107402 2108286 R PFAM: inner-membrane translocator; KEGG: cpy:Cphy_3535 inner-membrane translocator; inner-membrane translocator complement(2107402..2108286) Pelodictyon phaeoclathratiforme BU-1 6462928 YP_002018845.1 CDS Ppha_2017 NC_011060.1 2108740 2109734 R KEGG: cph:Cpha266_2243 hypothetical protein; hypothetical protein complement(join(2108740..2109303,2109303..2109734)) Pelodictyon phaeoclathratiforme BU-1 6462927 YP_002018846.1 CDS Ppha_2018 NC_011060.1 2109930 2110454 R KEGG: dsh:Dshi_3149 peptidase M15D VanX D-ala-D-ala dipeptidase; peptidase M15D VanX D-ala-D-ala dipeptidase complement(2109930..2110454) Pelodictyon phaeoclathratiforme BU-1 6462926 YP_002018847.1 CDS Ppha_2019 NC_011060.1 2110507 2112084 R PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rca:Rcas_2450 radical SAM protein; radical SAM protein complement(2110507..2112084) Pelodictyon phaeoclathratiforme BU-1 6462924 YP_002018848.1 CDS Ppha_2020 NC_011060.1 2112068 2112250 R hypothetical protein complement(2112068..2112250) Pelodictyon phaeoclathratiforme BU-1 6462921 YP_002018849.1 CDS Ppha_2021 NC_011060.1 2112285 2114246 R KEGG: pyo:PY02104 rhoptry protein Pfam: ATP-synt_E_2 Myosin_tail_1 DUF1374 MttA_Hcf106 AIP3 FCH DUF148 RasGAP Phg_2220_C MACPF VAR1 EAP30 Syntaxin-6_N PROSITE: ASN_RICH LYS_RICH PHE_RICH; hypothetical protein complement(2112285..2114246) Pelodictyon phaeoclathratiforme BU-1 6462917 YP_002018850.1 CDS Ppha_2022 NC_011060.1 2114243 2115364 R PFAM: Extracellular ligand-binding receptor; KEGG: cbf:CLI_0539 high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein; extracellular ligand-binding receptor complement(2114243..2115364) Pelodictyon phaeoclathratiforme BU-1 6462913 YP_002018851.1 CDS Ppha_2023 NC_011060.1 2115375 2116013 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0447 ATP binding protein of ABC transporter for branched-chain amino acids; ABC transporter-like protein complement(2115375..2116013) Pelodictyon phaeoclathratiforme BU-1 6462912 YP_002018852.1 CDS Ppha_2024 NC_011060.1 2116036 2116710 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cjd:JJD26997_0773 high affinity branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2116036..2116710) Pelodictyon phaeoclathratiforme BU-1 6462910 YP_002018853.1 CDS Ppha_2025 NC_011060.1 2117098 2117343 R hypothetical protein complement(2117098..2117343) Pelodictyon phaeoclathratiforme BU-1 6462909 YP_002018854.1 CDS Ppha_2026 NC_011060.1 2117404 2117886 R hypothetical protein complement(2117404..2117886) Pelodictyon phaeoclathratiforme BU-1 6462901 YP_002018855.1 CDS Ppha_2029 NC_011060.1 2118667 2120313 R PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein complement(2118667..2120313) Pelodictyon phaeoclathratiforme BU-1 6462895 YP_002018856.1 CDS Ppha_2030 NC_011060.1 2120595 2120888 D PFAM: plasmid maintenance system killer; KEGG: hne:HNE_2665 plasmid maintenance system killer protein; plasmid maintenance system killer protein 2120595..2120888 Pelodictyon phaeoclathratiforme BU-1 6462894 YP_002018857.1 CDS Ppha_2031 NC_011060.1 2120908 2121228 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sen:SACE_0851 plasmid maintenance system antidote protein; XRE family plasmid maintenance system antidote protein 2120908..2121228 Pelodictyon phaeoclathratiforme BU-1 6462889 YP_002018858.1 CDS Ppha_2033 NC_011060.1 2121595 2121816 D hypothetical protein 2121595..2121816 Pelodictyon phaeoclathratiforme BU-1 6462875 YP_002018859.1 CDS Ppha_2034 NC_011060.1 2121813 2122217 D KEGG: mar:MAE_40420 hypothetical protein; hypothetical protein 2121813..2122217 Pelodictyon phaeoclathratiforme BU-1 6462874 YP_002018860.1 CDS Ppha_2035 NC_011060.1 2122302 2123078 D PFAM: Protein of unkown function DUF1819 inner membrane; KEGG: swo:Swol_0988 hypothetical protein; hypothetical protein 2122302..2123078 Pelodictyon phaeoclathratiforme BU-1 6462873 YP_002018861.1 CDS Ppha_2036 NC_011060.1 2123062 2123655 D KEGG: swo:Swol_0989 hypothetical protein; hypothetical protein 2123062..2123655 Pelodictyon phaeoclathratiforme BU-1 6462872 YP_002018862.1 CDS Ppha_2037 NC_011060.1 2123667 2127302 D KEGG: swo:Swol_0990 hypothetical protein; hypothetical protein 2123667..2127302 Pelodictyon phaeoclathratiforme BU-1 6462869 YP_002018863.1 CDS Ppha_2038 NC_011060.1 2127323 2131048 D KEGG: swo:Swol_0997 hypothetical protein; hypothetical protein 2127323..2131048 Pelodictyon phaeoclathratiforme BU-1 6462866 YP_002018864.1 CDS Ppha_2039 NC_011060.1 2131061 2132263 D PFAM: protein of unknown function DUF1016; KEGG: cch:Cag_0874 hypothetical protein; hypothetical protein 2131061..2132263 Pelodictyon phaeoclathratiforme BU-1 6462865 YP_002018865.1 CDS Ppha_2040 NC_011060.1 2132253 2134475 D PFAM: PglZ domain protein; KEGG: swo:Swol_0998 hypothetical protein; PglZ domain-containing protein 2132253..2134475 Pelodictyon phaeoclathratiforme BU-1 6462862 YP_002018866.1 CDS Ppha_2041 NC_011060.1 2134506 2136560 D KEGG: swo:Swol_0999 ATP-dependent protease La; ATP-dependent protease La 2134506..2136560 Pelodictyon phaeoclathratiforme BU-1 6462857 YP_002018867.1 CDS Ppha_2042 NC_011060.1 2136671 2136919 D hypothetical protein 2136671..2136919 Pelodictyon phaeoclathratiforme BU-1 6462851 YP_002018868.1 CDS Ppha_2043 NC_011060.1 2137017 2137376 D KEGG: mgm:Mmc1_0221 hypothetical protein; hypothetical protein 2137017..2137376 Pelodictyon phaeoclathratiforme BU-1 6462849 YP_002018869.1 CDS Ppha_2044 NC_011060.1 2138183 2138371 D KEGG: mar:MAE_56120 hypothetical protein; hypothetical protein 2138183..2138371 Pelodictyon phaeoclathratiforme BU-1 6462848 YP_002018870.1 CDS Ppha_2046 NC_011060.1 2138688 2139443 R PFAM: HipA domain protein; KEGG: cch:Cag_1275 hypothetical protein; HipA domain-containing protein complement(2138688..2139443) Pelodictyon phaeoclathratiforme BU-1 6462845 YP_002018871.1 CDS Ppha_2047 NC_011060.1 2139456 2139707 R PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1274 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2139456..2139707) Pelodictyon phaeoclathratiforme BU-1 6462844 YP_002018872.1 CDS Ppha_2048 NC_011060.1 2139863 2140906 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cph:Cpha266_0725 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2139863..2140906) Pelodictyon phaeoclathratiforme BU-1 6462843 YP_002018873.1 CDS Ppha_2049 NC_011060.1 2140903 2141997 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: plt:Plut_1455 hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD complement(2140903..2141997) Pelodictyon phaeoclathratiforme BU-1 6462842 YP_002018874.1 CDS Ppha_2050 NC_011060.1 2142009 2142281 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cph:Cpha266_0723 hydrogenase assembly chaperone HypC/HupF; hydrogenase assembly chaperone HypC/HupF complement(2142009..2142281) Pelodictyon phaeoclathratiforme BU-1 6462839 YP_002018875.1 CDS Ppha_2051 NC_011060.1 2142372 2144921 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cch:Cag_0533 hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2142372..2144921) Pelodictyon phaeoclathratiforme BU-1 6462838 YP_002018876.1 CDS Ppha_2052 NC_011060.1 2144882 2145691 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cph:Cpha266_0721 hydrogenase accessory protein HypB; hydrogenase nickel incorporation protein HypB complement(2144882..2145691) Pelodictyon phaeoclathratiforme BU-1 6462837 YP_002018877.1 CDS Ppha_2053 NC_011060.1 2145696 2146049 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: plt:Plut_1459 hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA complement(2145696..2146049) Pelodictyon phaeoclathratiforme BU-1 6462836 YP_002018878.1 CDS Ppha_2054 NC_011060.1 2146171 2146332 R hypothetical protein complement(2146171..2146332) Pelodictyon phaeoclathratiforme BU-1 6462835 YP_002018879.1 CDS pyrB NC_011060.1 2146414 2147349 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2146414..2147349 Pelodictyon phaeoclathratiforme BU-1 6462834 YP_002018880.1 CDS Ppha_2056 NC_011060.1 2147366 2148280 D KEGG: cph:Cpha266_0718 hypothetical protein; hypothetical protein 2147366..2148280 Pelodictyon phaeoclathratiforme BU-1 6462833 YP_002018881.1 CDS Ppha_2057 NC_011060.1 2148378 2148884 R PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0717 NUDIX hydrolase; NUDIX hydrolase complement(2148378..2148884) Pelodictyon phaeoclathratiforme BU-1 6462831 YP_002018882.1 CDS Ppha_2058 NC_011060.1 2148944 2149150 D hypothetical protein 2148944..2149150 Pelodictyon phaeoclathratiforme BU-1 6462829 YP_002018883.1 CDS Ppha_2059 NC_011060.1 2149147 2150250 D KEGG: cph:Cpha266_0714 hypothetical protein; hypothetical protein 2149147..2150250 Pelodictyon phaeoclathratiforme BU-1 6462827 YP_002018884.1 CDS Ppha_2060 NC_011060.1 2150579 2151016 D PFAM: UspA domain protein; KEGG: cph:Cpha266_0713 UspA domain protein; UspA domain-containing protein 2150579..2151016 Pelodictyon phaeoclathratiforme BU-1 6462826 YP_002018885.1 CDS Ppha_2061 NC_011060.1 2151097 2152677 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cch:Cag_1339 sugar transport protein; major facilitator superfamily protein 2151097..2152677 Pelodictyon phaeoclathratiforme BU-1 6462825 YP_002018886.1 CDS Ppha_2062 NC_011060.1 2152704 2152928 D KEGG: cch:Cag_1340 hypothetical protein; hypothetical protein 2152704..2152928 Pelodictyon phaeoclathratiforme BU-1 6462824 YP_002018887.1 CDS uvrC NC_011060.1 2153031 2154914 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2153031..2154914 Pelodictyon phaeoclathratiforme BU-1 6462822 YP_002018888.1 CDS Ppha_2064 NC_011060.1 2154933 2155043 D hypothetical protein 2154933..2155043 Pelodictyon phaeoclathratiforme BU-1 6462821 YP_002018889.1 CDS Ppha_2065 NC_011060.1 2155030 2156427 D PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0709 hypothetical protein; hypothetical protein 2155030..2156427 Pelodictyon phaeoclathratiforme BU-1 6462820 YP_002018890.1 CDS Ppha_2066 NC_011060.1 2156424 2157275 D KEGG: cch:Cag_1345 quinate/shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; shikimate 5-dehydrogenase 2156424..2157275 Pelodictyon phaeoclathratiforme BU-1 6462819 YP_002018891.1 CDS Ppha_2067 NC_011060.1 2157303 2157812 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2157303..2157812 Pelodictyon phaeoclathratiforme BU-1 6462818 YP_002018892.1 CDS Ppha_2068 NC_011060.1 2157802 2158575 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cph:Cpha266_0706 hydrolase, TatD family; TatD family hydrolase 2157802..2158575 Pelodictyon phaeoclathratiforme BU-1 6462816 YP_002018893.1 CDS Ppha_2069 NC_011060.1 2158693 2159385 D KEGG: cch:Cag_1348 hypothetical protein; hypothetical protein 2158693..2159385 Pelodictyon phaeoclathratiforme BU-1 6462815 YP_002018894.1 CDS Ppha_2070 NC_011060.1 2159419 2159910 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cph:Cpha266_0704 peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2159419..2159910 Pelodictyon phaeoclathratiforme BU-1 6462814 YP_002018895.1 CDS Ppha_2071 NC_011060.1 2159925 2160614 D PFAM: alanine racemase domain protein; KEGG: pvi:Cvib_0534 alanine racemase domain protein; alanine racemase domain-containing protein 2159925..2160614 Pelodictyon phaeoclathratiforme BU-1 6462813 YP_002018896.1 CDS Ppha_2072 NC_011060.1 2160682 2161503 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2160682..2161503 Pelodictyon phaeoclathratiforme BU-1 6462809 YP_002018897.1 CDS Ppha_2073 NC_011060.1 2161520 2162584 D KEGG: cch:Cag_1355 initiation factor 2B alpha/beta/delta; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family 2161520..2162584 Pelodictyon phaeoclathratiforme BU-1 6462808 YP_002018898.1 CDS Ppha_2074 NC_011060.1 2162918 2164309 D PFAM: cytochrome c oxidase subunit I; KEGG: cch:Cag_1356 cytochrome-cbb3 oxidase, subunit I; cytochrome c oxidase subunit I 2162918..2164309 Pelodictyon phaeoclathratiforme BU-1 6462806 YP_002018899.1 CDS Ppha_2075 NC_011060.1 2164340 2165011 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2164340..2165011 Pelodictyon phaeoclathratiforme BU-1 6462805 YP_002018900.1 CDS Ppha_2076 NC_011060.1 2165008 2165151 D KEGG: afw:Anae109_1221 hypothetical protein; hypothetical protein 2165008..2165151 Pelodictyon phaeoclathratiforme BU-1 6462802 YP_002018901.1 CDS Ppha_2077 NC_011060.1 2165195 2165656 D PFAM: cytochrome c class I; KEGG: cch:Cag_1358 probable cb-type cytochrome c oxidase subunit III; cytochrome c class I 2165195..2165656 Pelodictyon phaeoclathratiforme BU-1 6462800 YP_002018902.1 CDS Ppha_2078 NC_011060.1 2165684 2166787 D KEGG: cch:Cag_1359 polyferredoxin-like; polyferredoxin-like protein 2165684..2166787 Pelodictyon phaeoclathratiforme BU-1 6462799 YP_002018903.1 CDS Ppha_2079 NC_011060.1 2166784 2167221 D KEGG: cch:Cag_1367 hypothetical protein; hypothetical protein 2166784..2167221 Pelodictyon phaeoclathratiforme BU-1 6462798 YP_002018904.1 CDS Ppha_2080 NC_011060.1 2167200 2167625 D KEGG: cch:Cag_1368 hypothetical protein; hypothetical protein 2167200..2167625 Pelodictyon phaeoclathratiforme BU-1 6462797 YP_002018905.1 CDS Ppha_2081 NC_011060.1 2167615 2170041 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cch:Cag_1369 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 2167615..2170041 Pelodictyon phaeoclathratiforme BU-1 6462795 YP_002018906.1 CDS Ppha_2082 NC_011060.1 2170055 2170246 D TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: cch:Cag_1370 cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 2170055..2170246 Pelodictyon phaeoclathratiforme BU-1 6462794 YP_002018907.1 CDS Ppha_2083 NC_011060.1 2170243 2170920 D KEGG: cch:Cag_1371 hypothetical protein; hypothetical protein 2170243..2170920 Pelodictyon phaeoclathratiforme BU-1 6462793 YP_002018908.1 CDS Ppha_2084 NC_011060.1 2171168 2171347 D KEGG: cch:Cag_0710 hypothetical protein; hypothetical protein 2171168..2171347 Pelodictyon phaeoclathratiforme BU-1 6462791 YP_002018909.1 CDS secG NC_011060.1 2171777 2172139 R TIGRFAM: preprotein translocase, SecG subunit; KEGG: cph:Cpha266_0931 preprotein translocase subunit SecG; preprotein translocase subunit SecG complement(2171777..2172139) Pelodictyon phaeoclathratiforme BU-1 6462787 YP_002018910.1 CDS Ppha_2086 NC_011060.1 2172229 2172468 D KEGG: cch:Cag_1532 hypothetical protein; hypothetical protein 2172229..2172468 Pelodictyon phaeoclathratiforme BU-1 6462785 YP_002018911.1 CDS hisB NC_011060.1 2172479 2173081 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 2172479..2173081 Pelodictyon phaeoclathratiforme BU-1 6462781 YP_002018912.1 CDS Ppha_2088 NC_011060.1 2173192 2174766 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(2173192..2174766) Pelodictyon phaeoclathratiforme BU-1 6462776 YP_002018913.1 CDS Ppha_2089 NC_011060.1 2175079 2175342 R KEGG: cph:Cpha266_0927 hypothetical protein; hypothetical protein complement(2175079..2175342) Pelodictyon phaeoclathratiforme BU-1 6462775 YP_002018914.1 CDS Ppha_2090 NC_011060.1 2175347 2175655 R KEGG: cch:Cag_1543 hypothetical protein; hypothetical protein complement(2175347..2175655) Pelodictyon phaeoclathratiforme BU-1 6462774 YP_002018915.1 CDS pheT NC_011060.1 2175670 2178081 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2175670..2178081) Pelodictyon phaeoclathratiforme BU-1 6462770 YP_002018916.1 CDS Ppha_2092 NC_011060.1 2178570 2179040 R PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0924 NUDIX hydrolase; NUDIX hydrolase complement(2178570..2179040) Pelodictyon phaeoclathratiforme BU-1 6462760 YP_002018917.1 CDS Ppha_2093 NC_011060.1 2179210 2180187 D PFAM: Nucleotidyl transferase; KEGG: plt:Plut_0673 glucose-1-phosphate thymidylyltransferase; nucleotidyl transferase 2179210..2180187 Pelodictyon phaeoclathratiforme BU-1 6462758 YP_002018918.1 CDS Ppha_2094 NC_011060.1 2180452 2181666 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2180452..2181666 Pelodictyon phaeoclathratiforme BU-1 6462757 YP_002018919.1 CDS Ppha_2095 NC_011060.1 2181700 2183115 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 2181700..2183115 Pelodictyon phaeoclathratiforme BU-1 6462756 YP_002018920.1 CDS Ppha_2096 NC_011060.1 2183494 2184141 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cph:Cpha266_0920 phosphoribosylanthranilate isomerase; Phosphoribosylanthranilate isomerase 2183494..2184141 Pelodictyon phaeoclathratiforme BU-1 6462753 YP_002018921.1 CDS Ppha_2097 NC_011060.1 2184138 2185112 R PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_0919 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2184138..2185112) Pelodictyon phaeoclathratiforme BU-1 6462752 YP_002018922.1 CDS Ppha_2098 NC_011060.1 2185242 2186996 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: plt:Plut_0668 glutathione-regulated potassium-efflux system protein KefC; sodium/hydrogen exchanger complement(2185242..2186996) Pelodictyon phaeoclathratiforme BU-1 6462751 YP_002018923.1 CDS Ppha_2099 NC_011060.1 2187135 2187275 D hypothetical protein 2187135..2187275 Pelodictyon phaeoclathratiforme BU-1 6462750 YP_002018924.1 CDS Ppha_2100 NC_011060.1 2187284 2187556 D PFAM: RNP-1 like RNA-binding protein; KEGG: cch:Cag_1551 RNA-binding region RNP-1 (RNA recognition motif); RNP-1 like RNA-binding protein 2187284..2187556 Pelodictyon phaeoclathratiforme BU-1 6462749 YP_002018925.1 CDS Ppha_2101 NC_011060.1 2187598 2187930 D KEGG: cch:Cag_1552 hypothetical protein; hypothetical protein 2187598..2187930 Pelodictyon phaeoclathratiforme BU-1 6462748 YP_002018926.1 CDS Ppha_2102 NC_011060.1 2188067 2188657 R TIGRFAM: yecA family protein; KEGG: cph:Cpha266_0914 YecA family protein; yecA family protein complement(2188067..2188657) Pelodictyon phaeoclathratiforme BU-1 6462747 YP_002018927.1 CDS Ppha_2103 NC_011060.1 2188789 2190495 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: cph:Cpha266_0913 sulfate transporter; sulfate transporter 2188789..2190495 Pelodictyon phaeoclathratiforme BU-1 6462745 YP_002018928.1 CDS Ppha_2104 NC_011060.1 2190645 2190899 R KEGG: cch:Cag_1554 hypothetical protein; hypothetical protein complement(2190645..2190899) Pelodictyon phaeoclathratiforme BU-1 6462743 YP_002018929.1 CDS Ppha_2105 NC_011060.1 2191055 2191507 D TIGRFAM: nitrogenase-associated protein; KEGG: cph:Cpha266_0911 nitrogenase-associated protein; nitrogenase-associated protein 2191055..2191507 Pelodictyon phaeoclathratiforme BU-1 6462739 YP_002018930.1 CDS Ppha_2106 NC_011060.1 2191511 2191819 D KEGG: cph:Cpha266_0910 hypothetical protein; hypothetical protein 2191511..2191819 Pelodictyon phaeoclathratiforme BU-1 6462738 YP_002018931.1 CDS Ppha_2107 NC_011060.1 2191910 2192353 D PFAM: protein of unknown function DUF296; KEGG: cte:CT0707 hypothetical protein; hypothetical protein 2191910..2192353 Pelodictyon phaeoclathratiforme BU-1 6462736 YP_002018932.1 CDS Ppha_2108 NC_011060.1 2192424 2193680 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1251 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase complement(2192424..2193680) Pelodictyon phaeoclathratiforme BU-1 6462735 YP_002018933.1 CDS Ppha_2109 NC_011060.1 2193965 2194714 R PFAM: protein of unknown function DUF45; KEGG: plt:Plut_0661 zinc protease; hypothetical protein complement(2193965..2194714) Pelodictyon phaeoclathratiforme BU-1 6462733 YP_002018934.1 CDS Ppha_2110 NC_011060.1 2194770 2195906 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: plt:Plut_1548 cystathionine gamma-synthase; cystathionine gamma-synthase complement(2194770..2195906) Pelodictyon phaeoclathratiforme BU-1 6462732 YP_002018935.1 CDS Ppha_2112 NC_011060.1 2196461 2197702 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase; RNA-directed DNA polymerase complement(2196461..2197702) Pelodictyon phaeoclathratiforme BU-1 6462730 YP_002018936.1 CDS Ppha_2113 NC_011060.1 2197699 2198082 R KEGG: eba:ebA7204 predicted transposase; hypothetical protein complement(2197699..2198082) Pelodictyon phaeoclathratiforme BU-1 6462727 YP_002018937.1 CDS Ppha_2114 NC_011060.1 2199391 2200104 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT2121 methyltransferase; type 11 methyltransferase 2199391..2200104 Pelodictyon phaeoclathratiforme BU-1 6462726 YP_002018938.1 CDS Ppha_2115 NC_011060.1 2200194 2200400 D PFAM: protein of unknown function UPF0150; KEGG: mar:MAE_62810 hypothetical protein; hypothetical protein 2200194..2200400 Pelodictyon phaeoclathratiforme BU-1 6462725 YP_002018939.1 CDS Ppha_2116 NC_011060.1 2200401 2200688 D KEGG: mar:MAE_62820 hypothetical protein; hypothetical protein 2200401..2200688 Pelodictyon phaeoclathratiforme BU-1 6462722 YP_002018940.1 CDS Ppha_2117 NC_011060.1 2200625 2201290 R PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: jan:Jann_3724 methyltransferase type 11; type 11 methyltransferase complement(2200625..2201290) Pelodictyon phaeoclathratiforme BU-1 6462721 YP_002018941.1 CDS Ppha_2118 NC_011060.1 2201344 2201634 R hypothetical protein complement(2201344..2201634) Pelodictyon phaeoclathratiforme BU-1 6462720 YP_002018942.1 CDS Ppha_2119 NC_011060.1 2201937 2202410 D KEGG: cch:Cag_1343 hypothetical protein; hypothetical protein 2201937..2202410 Pelodictyon phaeoclathratiforme BU-1 6462719 YP_002018943.1 CDS Ppha_2120 NC_011060.1 2202400 2202633 D hypothetical protein 2202400..2202633 Pelodictyon phaeoclathratiforme BU-1 6462716 YP_002018944.1 CDS Ppha_2121 NC_011060.1 2202768 2203220 D KEGG: gur:Gura_1011 protein of unknown function DUF1016; hypothetical protein 2202768..2203220 Pelodictyon phaeoclathratiforme BU-1 6462713 YP_002018945.1 CDS Ppha_2122 NC_011060.1 2203225 2203716 R KEGG: bxe:Bxe_A0223 HsdS protein; hypothetical protein complement(2203225..2203716) Pelodictyon phaeoclathratiforme BU-1 6462708 YP_002018946.1 CDS Ppha_2123 NC_011060.1 2203713 2204186 R KEGG: gur:Gura_4113 transcriptional regulator; transcriptional regulator complement(2203713..2204186) Pelodictyon phaeoclathratiforme BU-1 6462707 YP_002018947.1 CDS Ppha_2124 NC_011060.1 2205215 2205568 D PFAM: protein of unknown function DUF891; KEGG: cph:Cpha266_0649 protein of unknown function DUF891; hypothetical protein 2205215..2205568 Pelodictyon phaeoclathratiforme BU-1 6462705 YP_002018948.1 CDS Ppha_2125 NC_011060.1 2205561 2205836 D PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_0381 transcriptional regulator, XRE family; XRE family transcriptional regulator 2205561..2205836 Pelodictyon phaeoclathratiforme BU-1 6462702 YP_002018949.1 CDS Ppha_2127 NC_011060.1 2206349 2209084 D KEGG: mca:MCA2686 hypothetical protein; hypothetical protein 2206349..2209084 Pelodictyon phaeoclathratiforme BU-1 6462696 YP_002018950.1 CDS Ppha_2128 NC_011060.1 2209084 2210076 D KEGG: mca:MCA2685 hypothetical protein; hypothetical protein 2209084..2210076 Pelodictyon phaeoclathratiforme BU-1 6462690 YP_002018951.1 CDS Ppha_2129 NC_011060.1 2210087 2210836 D KEGG: ent:Ent638_1352 hypothetical protein; hypothetical protein 2210087..2210836 Pelodictyon phaeoclathratiforme BU-1 6462681 YP_002018952.1 CDS Ppha_2130 NC_011060.1 2210838 2211125 D hypothetical protein 2210838..2211125 Pelodictyon phaeoclathratiforme BU-1 6462669 YP_002018953.1 CDS Ppha_2131 NC_011060.1 2211115 2211462 D KEGG: mar:MAE_02430 hypothetical protein; transcriptional modulator of MazE/toxin MazF 2211115..2211462 Pelodictyon phaeoclathratiforme BU-1 6462663 YP_002018954.1 CDS Ppha_2132 NC_011060.1 2211462 2214818 D KEGG: vei:Veis_0099 hypothetical protein; hypothetical protein 2211462..2214818 Pelodictyon phaeoclathratiforme BU-1 6462653 YP_002018955.1 CDS Ppha_2133 NC_011060.1 2214815 2215315 D KEGG: vei:Veis_0100 hypothetical protein; hypothetical protein 2214815..2215315 Pelodictyon phaeoclathratiforme BU-1 6462641 YP_002018956.1 CDS Ppha_2134 NC_011060.1 2215325 2218108 D PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: mca:MCA2682 prophage LambdaMc01, helicase, SNF2 family; helicase domain-containing protein 2215325..2218108 Pelodictyon phaeoclathratiforme BU-1 6462639 YP_002018957.1 CDS Ppha_2135 NC_011060.1 2218252 2219493 D PFAM: RES domain protein; KEGG: neu:NE0745 hypothetical protein; RES domain-containing protein 2218252..2219493 Pelodictyon phaeoclathratiforme BU-1 6462621 YP_002018958.1 CDS Ppha_2136 NC_011060.1 2220309 2220449 D hypothetical protein 2220309..2220449 Pelodictyon phaeoclathratiforme BU-1 6462615 YP_002018959.1 CDS Ppha_2137 NC_011060.1 2220506 2221099 D KEGG: bcm:Bcenmc03_5097 hypothetical protein; hypothetical protein 2220506..2221099 Pelodictyon phaeoclathratiforme BU-1 6462611 YP_002018960.1 CDS Ppha_2138 NC_011060.1 2221133 2221432 R KEGG: cph:Cpha266_1621 hypothetical protein; hypothetical protein complement(2221133..2221432) Pelodictyon phaeoclathratiforme BU-1 6462600 YP_002018961.1 CDS Ppha_2141 NC_011060.1 2222260 2222469 D KEGG: cph:Cpha266_2116 hypothetical protein; hypothetical protein 2222260..2222469 Pelodictyon phaeoclathratiforme BU-1 6462587 YP_002018962.1 CDS Ppha_2142 NC_011060.1 2223180 2223743 R PFAM: protein of unknown function DUF179; KEGG: cph:Cpha266_0885 protein of unknown function DUF179; hypothetical protein complement(2223180..2223743) Pelodictyon phaeoclathratiforme BU-1 6462570 YP_002018963.1 CDS Ppha_2143 NC_011060.1 2223753 2224223 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_1602 bacterioferritin comigratory protein, thiol peroxidase; alkyl hydroperoxide reductase complement(2223753..2224223) Pelodictyon phaeoclathratiforme BU-1 6462552 YP_002018964.1 CDS Ppha_2144 NC_011060.1 2224308 2224823 D PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0883 NUDIX hydrolase; NUDIX hydrolase 2224308..2224823 Pelodictyon phaeoclathratiforme BU-1 6462532 YP_002018965.1 CDS Ppha_2145 NC_011060.1 2224825 2228199 R KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase complement(2224825..2228199) Pelodictyon phaeoclathratiforme BU-1 6462530 YP_002018966.1 CDS Ppha_2146 NC_011060.1 2228231 2229214 R KEGG: cph:Cpha266_0879 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2228231..2229214) Pelodictyon phaeoclathratiforme BU-1 6462520 YP_002018967.1 CDS Ppha_2147 NC_011060.1 2229298 2232609 D KEGG: cch:Cag_1882 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 2229298..2232609 Pelodictyon phaeoclathratiforme BU-1 6462511 YP_002018968.1 CDS Ppha_2148 NC_011060.1 2232725 2233342 D PFAM: ferredoxin; KEGG: cph:Cpha266_0877 ferredoxin; ferredoxin 2232725..2233342 Pelodictyon phaeoclathratiforme BU-1 6462508 YP_002018969.1 CDS Ppha_2149 NC_011060.1 2233505 2234185 D PFAM: ferredoxin; KEGG: pvi:Cvib_1151 ferredoxin; ferredoxin 2233505..2234185 Pelodictyon phaeoclathratiforme BU-1 6462504 YP_002018970.1 CDS Ppha_2150 NC_011060.1 2234237 2235457 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: cph:Cpha266_0875 L-alanine dehydrogenase; Alanine dehydrogenase 2234237..2235457 Pelodictyon phaeoclathratiforme BU-1 6462486 YP_002018971.1 CDS Ppha_2151 NC_011060.1 2235467 2236993 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cch:Cag_1888 carotenoid isomerase; amine oxidase complement(2235467..2236993) Pelodictyon phaeoclathratiforme BU-1 6462479 YP_002018972.1 CDS Ppha_2152 NC_011060.1 2237129 2237758 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 2237129..2237758 Pelodictyon phaeoclathratiforme BU-1 6462457 YP_002018973.1 CDS Ppha_2153 NC_011060.1 2237786 2238043 D KEGG: plt:Plut_0624 hypothetical protein; hypothetical protein 2237786..2238043 Pelodictyon phaeoclathratiforme BU-1 6462451 YP_002018974.1 CDS Ppha_2154 NC_011060.1 2238196 2238585 D PFAM: regulatory protein ArsR; KEGG: plt:Plut_0623 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2238196..2238585 Pelodictyon phaeoclathratiforme BU-1 6462450 YP_002018975.1 CDS Ppha_2155 NC_011060.1 2238833 2239231 D PFAM: heat shock protein Hsp20; KEGG: cch:Cag_1892 heat shock protein, HSP20 family; heat shock protein Hsp20 2238833..2239231 Pelodictyon phaeoclathratiforme BU-1 6462449 YP_002018976.1 CDS dnaK NC_011060.1 2239316 2241238 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2239316..2241238 Pelodictyon phaeoclathratiforme BU-1 6462436 YP_002018977.1 CDS Ppha_2157 NC_011060.1 2241379 2241813 D KEGG: cph:Cpha266_0863 photosystem P840 reaction center protein PscD; photosystem P840 reaction center protein PscD 2241379..2241813 Pelodictyon phaeoclathratiforme BU-1 6462434 YP_002018978.1 CDS Ppha_2158 NC_011060.1 2242074 2242862 R TIGRFAM: tol-pal system protein YbgF; KEGG: cph:Cpha266_0862 membrane lipoprotein lipid attachment site; tol-pal system protein YbgF complement(2242074..2242862) Pelodictyon phaeoclathratiforme BU-1 6462348 YP_002018979.1 CDS Ppha_2159 NC_011060.1 2242867 2243388 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0616 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein complement(2242867..2243388) Pelodictyon phaeoclathratiforme BU-1 6462310 YP_002018980.1 CDS Ppha_2160 NC_011060.1 2243473 2243946 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein; peptidoglycan-associated lipoprotein complement(2243473..2243946) Pelodictyon phaeoclathratiforme BU-1 6462207 YP_002018981.1 CDS Ppha_2161 NC_011060.1 2243989 2245311 R PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller; WD40 domain-containing protein beta Propeller complement(2243989..2245311) Pelodictyon phaeoclathratiforme BU-1 6462196 YP_002018982.1 CDS Ppha_2162 NC_011060.1 2245486 2246382 R KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family; Fis family transcriptional regulator complement(2245486..2246382) Pelodictyon phaeoclathratiforme BU-1 6462180 YP_002018983.1 CDS Ppha_2163 NC_011060.1 2246391 2246786 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein; biopolymer transport protein ExbD/TolR complement(2246391..2246786) Pelodictyon phaeoclathratiforme BU-1 6462168 YP_002018984.1 CDS Ppha_2164 NC_011060.1 2246816 2247475 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cph:Cpha266_0856 MotA/TolQ/ExbB proton channel; protein TolQ complement(2246816..2247475) Pelodictyon phaeoclathratiforme BU-1 6462131 YP_002018985.1 CDS Ppha_2165 NC_011060.1 2247500 2249080 R PFAM: phosphatidate cytidylyltransferase; protein of unknown function DUF92 transmembrane; KEGG: cph:Cpha266_0855 protein of unknown function DUF92, transmembrane; hypothetical protein complement(2247500..2249080) Pelodictyon phaeoclathratiforme BU-1 6462123 YP_002018986.1 CDS Ppha_2166 NC_011060.1 2249151 2249375 R hypothetical protein complement(2249151..2249375) Pelodictyon phaeoclathratiforme BU-1 6462099 YP_002018987.1 CDS Ppha_2167 NC_011060.1 2249533 2251230 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 2249533..2251230 Pelodictyon phaeoclathratiforme BU-1 6462080 YP_002018988.1 CDS Ppha_2168 NC_011060.1 2251238 2252959 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cph:Cpha266_0853 acetolactate synthase, large subunit; acetolactate synthase large subunit 2251238..2252959 Pelodictyon phaeoclathratiforme BU-1 6462024 YP_002018989.1 CDS Ppha_2169 NC_011060.1 2253199 2256645 D KEGG: cph:Cpha266_1549 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase 2253199..2256645 Pelodictyon phaeoclathratiforme BU-1 6462021 YP_002018990.1 CDS Ppha_2170 NC_011060.1 2256690 2256812 D hypothetical protein 2256690..2256812 Pelodictyon phaeoclathratiforme BU-1 6462017 YP_002018991.1 CDS ilvH NC_011060.1 2256875 2257351 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2256875..2257351 Pelodictyon phaeoclathratiforme BU-1 6462008 YP_002018992.1 CDS Ppha_2172 NC_011060.1 2257394 2258386 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2257394..2258386 Pelodictyon phaeoclathratiforme BU-1 6462006 YP_002018993.1 CDS Ppha_2173 NC_011060.1 2258403 2259461 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2258403..2259461 Pelodictyon phaeoclathratiforme BU-1 6461934 YP_002018994.1 CDS Ppha_2174 NC_011060.1 2259483 2261054 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2259483..2261054 Pelodictyon phaeoclathratiforme BU-1 6461856 YP_002018995.1 CDS Ppha_2175 NC_011060.1 2261062 2262357 D KEGG: cch:Cag_1900 3-isopropylmalate dehydratase; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; homoaconitate hydratase family protein 2261062..2262357 Pelodictyon phaeoclathratiforme BU-1 6461843 YP_002018996.1 CDS Ppha_2176 NC_011060.1 2262392 2262958 D TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: cph:Cpha266_0847 3-isopropylmalate dehydratase, small subunit; 3-isopropylmalate dehydratase small subunit 2262392..2262958 Pelodictyon phaeoclathratiforme BU-1 6461800 YP_002018997.1 CDS Ppha_2177 NC_011060.1 2262962 2264572 D TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cch:Cag_1898 alpha-isopropylmalate/homocitrate synthase family transferase; alpha-isopropylmalate/homocitrate synthase family transferase 2262962..2264572 Pelodictyon phaeoclathratiforme BU-1 6461665 YP_002018998.1 CDS Ppha_2178 NC_011060.1 2264670 2264924 R KEGG: cch:Cag_1724 hypothetical protein; hypothetical protein complement(2264670..2264924) Pelodictyon phaeoclathratiforme BU-1 6461659 YP_002018999.1 CDS Ppha_2181 NC_011060.1 2266290 2266448 R hypothetical protein complement(2266290..2266448) Pelodictyon phaeoclathratiforme BU-1 6461622 YP_002019000.1 CDS Ppha_2182 NC_011060.1 2266472 2266600 R KEGG: tbd:Tbd_2422 hypothetical protein; hypothetical protein complement(2266472..2266600) Pelodictyon phaeoclathratiforme BU-1 6461600 YP_002019001.1 CDS Ppha_2183 NC_011060.1 2266643 2266858 R KEGG: tbd:Tbd_2422 hypothetical protein; hypothetical protein complement(2266643..2266858) Pelodictyon phaeoclathratiforme BU-1 6461584 YP_002019002.1 CDS Ppha_2184 NC_011060.1 2266855 2267112 R TIGRFAM: prevent-host-death family protein; KEGG: tbd:Tbd_2423 prevent-host-death protein; prevent-host-death family protein complement(2266855..2267112) Pelodictyon phaeoclathratiforme BU-1 6461567 YP_002019003.1 CDS Ppha_2185 NC_011060.1 2267473 2267997 R PFAM: Lipocalin family protein; KEGG: cph:Cpha266_0694 lipocalin family protein; lipocalin family protein complement(2267473..2267997) Pelodictyon phaeoclathratiforme BU-1 6461554 YP_002019004.1 CDS Ppha_2186 NC_011060.1 2268073 2271096 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; hypothetical protein complement(2268073..2271096) Pelodictyon phaeoclathratiforme BU-1 6461553 YP_002019005.1 CDS Ppha_2188 NC_011060.1 2272649 2272876 R KEGG: dol:Dole_1759 prevent-host-death family protein; prevent-host-death family protein complement(2272649..2272876) Pelodictyon phaeoclathratiforme BU-1 6461466 YP_002019006.1 CDS Ppha_2189 NC_011060.1 2273019 2274050 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: cph:Cpha266_0459 hypothetical protein; RNA-directed DNA polymerase complement(2273019..2274050) Pelodictyon phaeoclathratiforme BU-1 6461427 YP_002019007.1 CDS Ppha_2191 NC_011060.1 2274446 2274766 R KEGG: cph:Cpha266_0458 hypothetical protein; hypothetical protein complement(2274446..2274766) Pelodictyon phaeoclathratiforme BU-1 6461413 YP_002019008.1 CDS Ppha_2192 NC_011060.1 2274827 2277976 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain; hypothetical protein complement(2274827..2277976) Pelodictyon phaeoclathratiforme BU-1 6461398 YP_002019009.1 CDS Ppha_2193 NC_011060.1 2277973 2278269 R PFAM: plasmid stabilization system; KEGG: cch:Cag_0909 hypothetical protein; plasmid stabilization system complement(2277973..2278269) Pelodictyon phaeoclathratiforme BU-1 6461392 YP_002019010.1 CDS Ppha_2194 NC_011060.1 2278266 2278556 R TIGRFAM: prevent-host-death family protein; KEGG: cch:Cag_0908 prevent-host-death protein; prevent-host-death family protein complement(2278266..2278556) Pelodictyon phaeoclathratiforme BU-1 6461382 YP_002019011.1 CDS Ppha_2196 NC_011060.1 2279118 2279996 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cph:Cpha266_1518 DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein complement(2279118..2279996) Pelodictyon phaeoclathratiforme BU-1 6461334 YP_002019012.1 CDS Ppha_2197 NC_011060.1 2280246 2280428 D KEGG: cph:Cpha266_0908 hypothetical protein; hypothetical protein 2280246..2280428 Pelodictyon phaeoclathratiforme BU-1 6461333 YP_002019013.1 CDS Ppha_2198 NC_011060.1 2280431 2281351 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cph:Cpha266_0693 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter complement(2280431..2281351) Pelodictyon phaeoclathratiforme BU-1 6461319 YP_002019014.1 CDS purU NC_011060.1 2281397 2282263 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(2281397..2282263) Pelodictyon phaeoclathratiforme BU-1 6461281 YP_002019015.1 CDS Ppha_2200 NC_011060.1 2282375 2282632 D KEGG: plt:Plut_1792 hypothetical protein; hypothetical protein 2282375..2282632 Pelodictyon phaeoclathratiforme BU-1 6461272 YP_002019016.1 CDS Ppha_2201 NC_011060.1 2282632 2283258 D PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_0514 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 2282632..2283258 Pelodictyon phaeoclathratiforme BU-1 6461246 YP_002019017.1 CDS Ppha_2202 NC_011060.1 2283233 2284780 D PFAM: glycosyl transferase family 39; KEGG: cph:Cpha266_0690 glycosyl transferase, family 39; glycosyl transferase family protein 2283233..2284780 Pelodictyon phaeoclathratiforme BU-1 6461224 YP_002019018.1 CDS Ppha_2203 NC_011060.1 2284777 2285724 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0689 glycosyl transferase, family 2; family 2 glycosyl transferase 2284777..2285724 Pelodictyon phaeoclathratiforme BU-1 6461218 YP_002019019.1 CDS Ppha_2204 NC_011060.1 2285711 2286604 D PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0688 hypothetical protein; hypothetical protein 2285711..2286604 Pelodictyon phaeoclathratiforme BU-1 6461190 YP_002019020.1 CDS Ppha_2205 NC_011060.1 2286738 2287376 D KEGG: pvi:Cvib_1533 porin, opacity type; porin, opacity type 2286738..2287376 Pelodictyon phaeoclathratiforme BU-1 6461081 YP_002019021.1 CDS Ppha_2206 NC_011060.1 2287446 2289167 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cph:Cpha266_0687 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(2287446..2289167) Pelodictyon phaeoclathratiforme BU-1 6461080 YP_002019022.1 CDS Ppha_2207 NC_011060.1 2289361 2290362 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 2289361..2290362 Pelodictyon phaeoclathratiforme BU-1 6461068 YP_002019023.1 CDS Ppha_2208 NC_011060.1 2290454 2291287 R PFAM: metallophosphoesterase; KEGG: cch:Cag_1605 hypothetical protein; metallophosphoesterase complement(2290454..2291287) Pelodictyon phaeoclathratiforme BU-1 6461033 YP_002019024.1 CDS Ppha_2209 NC_011060.1 2291393 2292634 R PFAM: AAA-4 family protein; KEGG: cch:Cag_0166 transcriptional regulator; transcriptional regulator complement(2291393..2292634) Pelodictyon phaeoclathratiforme BU-1 6461032 YP_002019025.1 CDS Ppha_2211 NC_011060.1 2292986 2293612 D KEGG: cph:Cpha266_0681 hypothetical protein; hypothetical protein 2292986..2293612 Pelodictyon phaeoclathratiforme BU-1 6460972 YP_002019026.1 CDS Ppha_2212 NC_011060.1 2293866 2294540 D hypothetical protein 2293866..2294540 Pelodictyon phaeoclathratiforme BU-1 6460969 YP_002019027.1 CDS Ppha_2213 NC_011060.1 2294648 2296873 R KEGG: cph:Cpha266_0680 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; isocitrate dehydrogenase complement(2294648..2296873) Pelodictyon phaeoclathratiforme BU-1 6460967 YP_002019028.1 CDS Ppha_2214 NC_011060.1 2297262 2298128 R KEGG: cph:Cpha266_0679 enoyl-[acyl-carrier-protein] reductase [NADH]; enoyl-(acyl carrier protein) reductase complement(2297262..2298128) Pelodictyon phaeoclathratiforme BU-1 6460960 YP_002019029.1 CDS Ppha_2215 NC_011060.1 2298268 2299569 R KEGG: plt:Plut_0457 anion-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(2298268..2299569) Pelodictyon phaeoclathratiforme BU-1 6460954 YP_002019030.1 CDS aat NC_011060.1 2299664 2300248 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(2299664..2300248) Pelodictyon phaeoclathratiforme BU-1 6460927 YP_002019031.1 CDS Ppha_2217 NC_011060.1 2300275 2300853 R PFAM: nitroreductase; KEGG: plt:Plut_0455 nitroreductase family protein; nitroreductase complement(2300275..2300853) Pelodictyon phaeoclathratiforme BU-1 6460919 YP_002019032.1 CDS Ppha_2218 NC_011060.1 2300865 2301908 R KEGG: cph:Cpha266_0675 hypothetical protein; hypothetical protein complement(2300865..2301908) Pelodictyon phaeoclathratiforme BU-1 6460906 YP_002019033.1 CDS Ppha_2219 NC_011060.1 2301941 2304160 R PFAM: UvrD/REP helicase; KEGG: cch:Cag_1415 DNA helicase II; UvrD/REP helicase complement(2301941..2304160) Pelodictyon phaeoclathratiforme BU-1 6460893 YP_002019034.1 CDS Ppha_2220 NC_011060.1 2304383 2305825 D PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: plt:Plut_0452 alpha amylase, catalytic subdomain; alpha amylase catalytic protein 2304383..2305825 Pelodictyon phaeoclathratiforme BU-1 6460891 YP_002019035.1 CDS Ppha_2221 NC_011060.1 2305904 2306329 D PFAM: protein of unknown function UPF0047; KEGG: cch:Cag_1417 hypothetical protein; hypothetical protein 2305904..2306329 Pelodictyon phaeoclathratiforme BU-1 6460863 YP_002019036.1 CDS Ppha_2222 NC_011060.1 2306378 2308357 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2306378..2308357 Pelodictyon phaeoclathratiforme BU-1 6460857 YP_002019037.1 CDS Ppha_2223 NC_011060.1 2308336 2308812 R PFAM: phosphatidylglycerophosphatase A; KEGG: cph:Cpha266_0670 phosphatidylglycerophosphatase; phosphatidylglycerophosphatase A complement(2308336..2308812) Pelodictyon phaeoclathratiforme BU-1 6460853 YP_002019038.1 CDS Ppha_2224 NC_011060.1 2308820 2309437 R TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cch:Cag_1419 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase complement(2308820..2309437) Pelodictyon phaeoclathratiforme BU-1 6461905 YP_002019039.1 CDS Ppha_2225 NC_011060.1 2309576 2311957 R PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cph:Cpha266_0668 Smr protein/MutS2; Smr protein/MutS2 complement(2309576..2311957) Pelodictyon phaeoclathratiforme BU-1 6462037 YP_002019040.1 CDS Ppha_2226 NC_011060.1 2312294 2312692 D KEGG: neu:NE0822 hypothetical protein; hypothetical protein 2312294..2312692 Pelodictyon phaeoclathratiforme BU-1 6462339 YP_002019041.1 CDS Ppha_2227 NC_011060.1 2312706 2313419 D PFAM: RES domain protein; KEGG: neu:NE0821 hypothetical protein; RES domain-containing protein 2312706..2313419 Pelodictyon phaeoclathratiforme BU-1 6462122 YP_002019042.1 CDS Ppha_2228 NC_011060.1 2313471 2313800 D PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_2159 hypothetical protein; XRE family transcriptional regulator 2313471..2313800 Pelodictyon phaeoclathratiforme BU-1 6461104 YP_002019043.1 CDS Ppha_2229 NC_011060.1 2313805 2315094 D PFAM: HipA domain protein; KEGG: aba:Acid345_2426 HipA-like protein; HipA domain-containing protein 2313805..2315094 Pelodictyon phaeoclathratiforme BU-1 6461795 YP_002019044.1 CDS Ppha_2230 NC_011060.1 2315353 2315490 R hypothetical protein complement(2315353..2315490) Pelodictyon phaeoclathratiforme BU-1 6462222 YP_002019045.1 CDS Ppha_2231 NC_011060.1 2315545 2317266 D PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein 2315545..2317266 Pelodictyon phaeoclathratiforme BU-1 6461254 YP_002019046.1 CDS Ppha_2232 NC_011060.1 2317309 2317806 R KEGG: nma:NMA0936 hypothetical protein; hypothetical protein complement(2317309..2317806) Pelodictyon phaeoclathratiforme BU-1 6461132 YP_002019047.1 CDS Ppha_2233 NC_011060.1 2317803 2318822 R KEGG: nmn:NMCC_0685 hypothetical protein; hypothetical protein complement(2317803..2318822) Pelodictyon phaeoclathratiforme BU-1 6461989 YP_002019048.1 CDS Ppha_2234 NC_011060.1 2318967 2319170 D hypothetical protein 2318967..2319170 Pelodictyon phaeoclathratiforme BU-1 6462493 YP_002019049.1 CDS Ppha_2236 NC_011060.1 2320226 2320447 D PFAM: protein of unknown function UPF0150; KEGG: mhu:Mhun_2716 protein of unknown function UPF0150; hypothetical protein 2320226..2320447 Pelodictyon phaeoclathratiforme BU-1 6461477 YP_002019050.1 CDS Ppha_2237 NC_011060.1 2320578 2321951 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sas:pSAS13 hypothetical protein; type 12 methyltransferase complement(2320578..2321951) Pelodictyon phaeoclathratiforme BU-1 6461060 YP_002019051.1 CDS Ppha_2238 NC_011060.1 2322147 2322947 R KEGG: pfa:PFI1280c protein kinase; hypothetical protein complement(2322147..2322947) Pelodictyon phaeoclathratiforme BU-1 6461628 YP_002019052.1 CDS Ppha_2240 NC_011060.1 2325694 2327409 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: gur:Gura_4390 site-specific DNA-methyltransferase (adenine-specific); DNA methylase N-4/N-6 domain-containing protein complement(2325694..2327409) Pelodictyon phaeoclathratiforme BU-1 6462580 YP_002019053.1 CDS Ppha_2241 NC_011060.1 2327643 2328968 R KEGG: mem:Memar_0416 transcriptional regulator; transcriptional regulator complement(2327643..2328968) Pelodictyon phaeoclathratiforme BU-1 6461749 YP_002019054.1 CDS Ppha_2242 NC_011060.1 2329312 2329635 D PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related; hypothetical protein 2329312..2329635 Pelodictyon phaeoclathratiforme BU-1 6461648 YP_002019055.1 CDS Ppha_2243 NC_011060.1 2329632 2329970 D PFAM: helix-turn-helix domain protein; KEGG: plt:Plut_0827 transcriptional regulator, XRE family; XRE family transcriptional regulator 2329632..2329970 Pelodictyon phaeoclathratiforme BU-1 6462130 YP_002019056.1 CDS Ppha_2244 NC_011060.1 2330032 2330280 R KEGG: cph:Cpha266_0634 transcriptional regulator; transcriptional regulator complement(2330032..2330280) Pelodictyon phaeoclathratiforme BU-1 6462363 YP_002019057.1 CDS Ppha_2245 NC_011060.1 2330471 2330623 R KEGG: cch:Cag_0692 hypothetical protein; hypothetical protein complement(2330471..2330623) Pelodictyon phaeoclathratiforme BU-1 6461757 YP_002019058.1 CDS Ppha_2246 NC_011060.1 2330702 2331082 D KEGG: gur:Gura_0590 hypothetical protein; hypothetical protein 2330702..2331082 Pelodictyon phaeoclathratiforme BU-1 6462395 YP_002019059.1 CDS Ppha_2247 NC_011060.1 2331042 2331776 D PFAM: RES domain protein; KEGG: gur:Gura_0589 hypothetical protein; RES domain-containing protein 2331042..2331776 Pelodictyon phaeoclathratiforme BU-1 6461453 YP_002019060.1 CDS Ppha_2248 NC_011060.1 2331923 2332633 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 2331923..2332633 Pelodictyon phaeoclathratiforme BU-1 6460867 YP_002019061.1 CDS Ppha_2249 NC_011060.1 2332642 2333346 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 2332642..2333346 Pelodictyon phaeoclathratiforme BU-1 6461187 YP_002019062.1 CDS Ppha_2250 NC_011060.1 2333343 2334191 D phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 2333343..2334191 Pelodictyon phaeoclathratiforme BU-1 6462056 YP_002019063.1 CDS Ppha_2251 NC_011060.1 2334301 2335161 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cch:Cag_0481 phosphoesterase PHP-like; PHP domain-containing protein 2334301..2335161 Pelodictyon phaeoclathratiforme BU-1 6462422 YP_002019064.1 CDS Ppha_2252 NC_011060.1 2335206 2336000 D PFAM: protein of unknown function DUF140; KEGG: pvi:Cvib_0490 protein of unknown function DUF140; hypothetical protein 2335206..2336000 Pelodictyon phaeoclathratiforme BU-1 6461657 YP_002019065.1 CDS Ppha_2253 NC_011060.1 2336005 2336739 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0441 ATPase; ABC transporter-like protein 2336005..2336739 Pelodictyon phaeoclathratiforme BU-1 6462584 YP_002019066.1 CDS Ppha_2254 NC_011060.1 2336763 2337641 D PFAM: Mammalian cell entry related domain protein; KEGG: cch:Cag_0478 VpsC protein; mammalian cell entry domain-containing protein 2336763..2337641 Pelodictyon phaeoclathratiforme BU-1 6462036 YP_002019067.1 CDS Ppha_2255 NC_011060.1 2337657 2338796 D PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease; beta-lactamase 2337657..2338796 Pelodictyon phaeoclathratiforme BU-1 6462320 YP_002019068.1 CDS Ppha_2256 NC_011060.1 2338801 2340732 R PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cph:Cpha266_0659 Rieske (2Fe-2S) domain protein; Rieske (2Fe-2S) domain-containing protein complement(2338801..2340732) Pelodictyon phaeoclathratiforme BU-1 6461229 YP_002019069.1 CDS Ppha_2257 NC_011060.1 2340838 2341812 D PFAM: domain of unknown function DUF1730; KEGG: cch:Cag_0255 iron-sulfur cluster-binding protein; hypothetical protein 2340838..2341812 Pelodictyon phaeoclathratiforme BU-1 6462465 YP_002019070.1 CDS Ppha_2258 NC_011060.1 2342015 2343097 R KEGG: dde:Dde_3749 ATPase domain protein; ATPase domain-containing protein complement(2342015..2343097) Pelodictyon phaeoclathratiforme BU-1 6460957 YP_002019071.1 CDS purH NC_011060.1 2343121 2344698 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(2343121..2344698) Pelodictyon phaeoclathratiforme BU-1 6462198 YP_002019072.1 CDS Ppha_2260 NC_011060.1 2345036 2345644 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: gka:GKP41 hypothetical protein; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(2345036..2345644) Pelodictyon phaeoclathratiforme BU-1 6462472 YP_002019073.1 CDS Ppha_2261 NC_011060.1 2345782 2347725 R SMART: LamG domain protein jellyroll fold domain protein; KEGG: afm:AFUA_8G07170 hypothetical protein; LamG domain-containing protein jellyroll fold domain-containing protein complement(2345782..2347725) Pelodictyon phaeoclathratiforme BU-1 6461309 YP_002019074.1 CDS Ppha_2262 NC_011060.1 2347796 2348269 R hypothetical protein complement(2347796..2348269) Pelodictyon phaeoclathratiforme BU-1 6461850 YP_002019075.1 CDS Ppha_2263 NC_011060.1 2348433 2348729 R hypothetical protein complement(2348433..2348729) Pelodictyon phaeoclathratiforme BU-1 6462671 YP_002019076.1 CDS Ppha_2264 NC_011060.1 2348704 2349327 R PFAM: protein of unknown function DUF1105; KEGG: lil:LB146 hypothetical protein; hypothetical protein complement(2348704..2349327) Pelodictyon phaeoclathratiforme BU-1 6462668 YP_002019077.1 CDS Ppha_2265 NC_011060.1 2349687 2350451 R PFAM: N-acetyltransferase; KEGG: cph:Cpha266_1973 N-acetyltransferase; N-acetyltransferase complement(2349687..2350451) Pelodictyon phaeoclathratiforme BU-1 6462606 YP_002019078.1 CDS Ppha_2266 NC_011060.1 2350683 2351333 D KEGG: cph:Cpha266_1559 hypothetical protein; hypothetical protein 2350683..2351333 Pelodictyon phaeoclathratiforme BU-1 6462577 YP_002019079.1 CDS Ppha_2267 NC_011060.1 2351359 2351505 R hypothetical protein complement(2351359..2351505) Pelodictyon phaeoclathratiforme BU-1 6462487 YP_002019080.1 CDS Ppha_2268 NC_011060.1 2351502 2351813 R KEGG: cau:Caur_0439 hypothetical protein; hypothetical protein complement(2351502..2351813) Pelodictyon phaeoclathratiforme BU-1 6462405 YP_002019081.1 CDS Ppha_2269 NC_011060.1 2352146 2353342 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cte:CT1232 geranylgeranyl hydrogenase BchP; geranylgeranyl reductase complement(2352146..2353342) Pelodictyon phaeoclathratiforme BU-1 6462227 YP_002019082.1 CDS Ppha_2270 NC_011060.1 2353451 2353705 R hypothetical protein complement(2353451..2353705) Pelodictyon phaeoclathratiforme BU-1 6462144 YP_002019083.1 CDS Ppha_2271 NC_011060.1 2353800 2354018 R KEGG: dol:Dole_0659 hypothetical protein; hypothetical protein complement(2353800..2354018) Pelodictyon phaeoclathratiforme BU-1 6462128 YP_002019084.1 CDS Ppha_2272 NC_011060.1 2354018 2354302 R PFAM: protein of unknown function DUF497; KEGG: syn:ssr0757 hypothetical protein; hypothetical protein complement(2354018..2354302) Pelodictyon phaeoclathratiforme BU-1 6462051 YP_002019085.1 CDS Ppha_2273 NC_011060.1 2354648 2354962 R TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family; transcriptional regulator complement(2354648..2354962) Pelodictyon phaeoclathratiforme BU-1 6461912 YP_002019086.1 CDS Ppha_2274 NC_011060.1 2355229 2355768 R hypothetical protein complement(2355229..2355768) Pelodictyon phaeoclathratiforme BU-1 6461897 YP_002019087.1 CDS Ppha_2275 NC_011060.1 2356100 2356330 R KEGG: mhu:Mhun_0713 hypothetical protein; hypothetical protein complement(2356100..2356330) Pelodictyon phaeoclathratiforme BU-1 6461837 YP_002019088.1 CDS Ppha_2276 NC_011060.1 2356435 2356596 D hypothetical protein 2356435..2356596 Pelodictyon phaeoclathratiforme BU-1 6461634 YP_002019089.1 CDS Ppha_2277 NC_011060.1 2356577 2356762 D KEGG: net:Neut_0161 ATP-binding region, ATPase-like; ATP-binding region, ATPase-like protein 2356577..2356762 Pelodictyon phaeoclathratiforme BU-1 6462271 YP_002019090.1 CDS Ppha_2278 NC_011060.1 2356796 2357206 D KEGG: noc:Noc_0061 hypothetical protein; hypothetical protein 2356796..2357206 Pelodictyon phaeoclathratiforme BU-1 6461266 YP_002019091.1 CDS Ppha_2279 NC_011060.1 2357219 2357821 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cch:Cag_0504 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 2357219..2357821 Pelodictyon phaeoclathratiforme BU-1 6461134 YP_002019092.1 CDS Ppha_2280 NC_011060.1 2357818 2358489 D PFAM: radical SAM protein; KEGG: cph:Cpha266_1979 radical SAM protein; radical SAM protein 2357818..2358489 Pelodictyon phaeoclathratiforme BU-1 6460873 YP_002019093.1 CDS Ppha_2281 NC_011060.1 2358689 2359702 D PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1980 glycosyl transferase, family 2; family 2 glycosyl transferase 2358689..2359702 Pelodictyon phaeoclathratiforme BU-1 6461537 YP_002019094.1 CDS Ppha_2282 NC_011060.1 2359731 2360573 D Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2359731..2360573 Pelodictyon phaeoclathratiforme BU-1 6460933 YP_002019095.1 CDS Ppha_2283 NC_011060.1 2360582 2361463 R PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1982 cell division protein FtsX; hypothetical protein complement(2360582..2361463) Pelodictyon phaeoclathratiforme BU-1 6461040 YP_002019096.1 CDS Ppha_2284 NC_011060.1 2361703 2362227 R KEGG: cph:Cpha266_1983 hypothetical protein; hypothetical protein complement(2361703..2362227) Pelodictyon phaeoclathratiforme BU-1 6461376 YP_002019097.1 CDS Ppha_2285 NC_011060.1 2362523 2364016 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; KEGG: cph:Cpha266_1989 amidophosphoribosyltransferase; amidophosphoribosyltransferase 2362523..2364016 Pelodictyon phaeoclathratiforme BU-1 6461833 YP_002019098.1 CDS Ppha_2286 NC_011060.1 2364020 2364454 R KEGG: plt:Plut_0424 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator complement(2364020..2364454) Pelodictyon phaeoclathratiforme BU-1 6461998 YP_002019099.1 CDS ileS NC_011060.1 2364529 2367786 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase complement(2364529..2367786) Pelodictyon phaeoclathratiforme BU-1 6462074 YP_002019100.1 CDS Ppha_2288 NC_011060.1 2367960 2368166 R KEGG: cch:Cag_0522 hypothetical protein; hypothetical protein complement(2367960..2368166) Pelodictyon phaeoclathratiforme BU-1 6462209 YP_002019101.1 CDS Ppha_2289 NC_011060.1 2368312 2369727 R KEGG: cch:Cag_0518 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(2368312..2369727) Pelodictyon phaeoclathratiforme BU-1 6462291 YP_002019102.1 CDS Ppha_2290 NC_011060.1 2369750 2370727 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: plt:Plut_0420 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(2369750..2370727) Pelodictyon phaeoclathratiforme BU-1 6462485 YP_002019103.1 CDS Ppha_2291 NC_011060.1 2370770 2371819 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0516 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(2370770..2371819) Pelodictyon phaeoclathratiforme BU-1 6462547 YP_002019104.1 CDS Ppha_2292 NC_011060.1 2371857 2372735 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0515 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(2371857..2372735) Pelodictyon phaeoclathratiforme BU-1 6462582 YP_002019105.1 CDS Ppha_2293 NC_011060.1 2373418 2374053 D hypothetical protein 2373418..2374053 Pelodictyon phaeoclathratiforme BU-1 6462625 YP_002019106.1 CDS Ppha_2294 NC_011060.1 2374131 2374961 R KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein complement(2374131..2374961) Pelodictyon phaeoclathratiforme BU-1 6462646 YP_002019107.1 CDS Ppha_2295 NC_011060.1 2375398 2376867 D KEGG: hbu:Hbut_1342 hypothetical protein; hypothetical protein 2375398..2376867 Pelodictyon phaeoclathratiforme BU-1 6462105 YP_002019108.1 CDS Ppha_2296 NC_011060.1 2376944 2377495 R KEGG: cph:Cpha266_0295 hypothetical protein; hypothetical protein complement(2376944..2377495) Pelodictyon phaeoclathratiforme BU-1 6462686 YP_002019109.1 CDS Ppha_2297 NC_011060.1 2377715 2379195 D hypothetical protein join(2377715..2378185,2378185..2379195) Pelodictyon phaeoclathratiforme BU-1 6462704 YP_002019110.1 CDS Ppha_2298 NC_011060.1 2379611 2379862 R KEGG: cte:CT1122 hypothetical protein; hypothetical protein complement(2379611..2379862) Pelodictyon phaeoclathratiforme BU-1 6462062 YP_002019111.1 CDS Ppha_2299 NC_011060.1 2380035 2380655 R KEGG: cch:Cag_0514 dTDP-4-dehydrorhamnose 3,5-epimerase related; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2380035..2380655) Pelodictyon phaeoclathratiforme BU-1 6461899 YP_002019112.1 CDS Ppha_2300 NC_011060.1 2380749 2381630 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pvi:Cvib_0468 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(2380749..2381630) Pelodictyon phaeoclathratiforme BU-1 6461556 YP_002019113.1 CDS Ppha_2301 NC_011060.1 2381748 2381924 R hypothetical protein complement(2381748..2381924) Pelodictyon phaeoclathratiforme BU-1 6461879 YP_002019114.1 CDS Ppha_2302 NC_011060.1 2381905 2382171 R hypothetical protein complement(2381905..2382171) Pelodictyon phaeoclathratiforme BU-1 6461378 YP_002019115.1 CDS Ppha_2303 NC_011060.1 2382185 2383189 R PFAM: Bile acid:sodium symporter; KEGG: cch:Cag_0408 sodium/bile acid symporter family protein; bile acid:sodium symporter complement(2382185..2383189) Pelodictyon phaeoclathratiforme BU-1 6461170 YP_002019116.1 CDS Ppha_2304 NC_011060.1 2383576 2385087 R KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(2383576..2385087) Pelodictyon phaeoclathratiforme BU-1 6461115 YP_002019117.1 CDS Ppha_2305 NC_011060.1 2385458 2386324 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2385458..2386324) Pelodictyon phaeoclathratiforme BU-1 6461067 YP_002019118.1 CDS Ppha_2306 NC_011060.1 2386398 2387453 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cph:Cpha266_0142 uroporphyrinogen-III C-methyltransferase; uroporphyrin-III C-methyltransferase complement(2386398..2387453) Pelodictyon phaeoclathratiforme BU-1 6461645 YP_002019119.1 CDS Ppha_2307 NC_011060.1 2387484 2387933 R KEGG: cph:Cpha266_0141 porphyrin biosynthesis protein; porphyrin biosynthesis protein complement(2387484..2387933) Pelodictyon phaeoclathratiforme BU-1 6462536 YP_002019120.1 CDS Ppha_2308 NC_011060.1 2387983 2388114 R hypothetical protein complement(2387983..2388114) Pelodictyon phaeoclathratiforme BU-1 6462544 YP_002019121.1 CDS Ppha_2309 NC_011060.1 2388104 2389180 R PFAM: Polysulphide reductase NrfD; KEGG: cph:Cpha266_0140 polysulphide reductase, NrfD; polysulfide reductase NrfD complement(2388104..2389180) Pelodictyon phaeoclathratiforme BU-1 6462411 YP_002019122.1 CDS Ppha_2310 NC_011060.1 2389190 2389966 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0139 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(2389190..2389966) Pelodictyon phaeoclathratiforme BU-1 6462171 YP_002019123.1 CDS Ppha_2311 NC_011060.1 2389966 2390346 R KEGG: cch:Cag_1946 hypothetical protein; hypothetical protein complement(2389966..2390346) Pelodictyon phaeoclathratiforme BU-1 6461596 YP_002019124.1 CDS Ppha_2312 NC_011060.1 2390339 2391991 R KEGG: cch:Cag_1947 DsrK protein; DsrK protein complement(2390339..2391991) Pelodictyon phaeoclathratiforme BU-1 6461116 YP_002019125.1 CDS Ppha_2313 NC_011060.1 2391994 2392989 R PFAM: Nitrate reductase gamma subunit; KEGG: cph:Cpha266_0136 nitrate reductase, gamma subunit; Nitrate reductase gamma subunit complement(2391994..2392989) Pelodictyon phaeoclathratiforme BU-1 6461801 YP_002019126.1 CDS Ppha_2314 NC_011060.1 2392986 2393456 R KEGG: cch:Cag_1949 hypothetical protein; hypothetical protein complement(2392986..2393456) Pelodictyon phaeoclathratiforme BU-1 6462233 YP_002019127.1 CDS Ppha_2315 NC_011060.1 2393501 2393794 R TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cph:Cpha266_0134 DsrH family protein; sulfur relay protein TusB/DsrH complement(2393501..2393794) Pelodictyon phaeoclathratiforme BU-1 6462061 YP_002019128.1 CDS Ppha_2316 NC_011060.1 2393830 2394219 R TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cph:Cpha266_0133 DsrE family protein; sulfur relay protein TusC/DsrF complement(2393830..2394219) Pelodictyon phaeoclathratiforme BU-1 6462352 YP_002019129.1 CDS Ppha_2317 NC_011060.1 2394224 2394583 R TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cph:Cpha266_0132 DsrE family protein; sulfur relay protein TusD/DsrE complement(2394224..2394583) Pelodictyon phaeoclathratiforme BU-1 6462529 YP_002019130.1 CDS Ppha_2318 NC_011060.1 2394631 2395008 R KEGG: cph:Cpha266_0131 hypothetical protein; hypothetical protein complement(2394631..2395008) Pelodictyon phaeoclathratiforme BU-1 6462528 YP_002019131.1 CDS Ppha_2319 NC_011060.1 2395056 2396792 R unknown function; glutamate synthase (NADPH) small subunit complement(2395056..2396792) Pelodictyon phaeoclathratiforme BU-1 6461450 YP_002019132.1 CDS Ppha_2320 NC_011060.1 2396808 2397887 R KEGG: cph:Cpha266_0129 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type beta subunit complement(2396808..2397887) Pelodictyon phaeoclathratiforme BU-1 6462503 YP_002019133.1 CDS Ppha_2321 NC_011060.1 2397976 2399229 R KEGG: cph:Cpha266_0128 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit complement(2397976..2399229) Pelodictyon phaeoclathratiforme BU-1 6462510 YP_002019134.1 CDS Ppha_2322 NC_011060.1 2399285 2399620 R TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: cch:Cag_1957 sulfite reductase, dissimilatory-type, gamma subunit; TusE/DsrC/DsvC family sulfur relay protein complement(2399285..2399620) Pelodictyon phaeoclathratiforme BU-1 6462630 YP_002019135.1 CDS Ppha_2323 NC_011060.1 2399852 2401219 R TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0126 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(2399852..2401219) Pelodictyon phaeoclathratiforme BU-1 6462675 YP_002019136.1 CDS Ppha_2324 NC_011060.1 2401353 2401586 R PFAM: SirA family protein; KEGG: cph:Cpha266_0125 SirA family protein; SirA family protein complement(2401353..2401586) Pelodictyon phaeoclathratiforme BU-1 6462689 YP_002019137.1 CDS Ppha_2325 NC_011060.1 2401645 2402112 R PFAM: Rhodanese domain protein; KEGG: cch:Cag_1960 rhodanese-like; rhodanese domain-containing protein complement(2401645..2402112) Pelodictyon phaeoclathratiforme BU-1 6462712 YP_002019138.1 CDS Ppha_2326 NC_011060.1 2402208 2402717 R KEGG: cph:Cpha266_0123 hypothetical protein; hypothetical protein complement(2402208..2402717) Pelodictyon phaeoclathratiforme BU-1 6463828 YP_002019139.1 CDS Ppha_2327 NC_011060.1 2402876 2403289 R KEGG: cch:Cag_1962 hypothetical protein; hypothetical protein complement(2402876..2403289) Pelodictyon phaeoclathratiforme BU-1 6463831 YP_002019140.1 CDS Ppha_2328 NC_011060.1 2403308 2404264 R PFAM: protein of unknown function DUF81; KEGG: cch:Cag_1963 hypothetical protein; hypothetical protein complement(2403308..2404264) Pelodictyon phaeoclathratiforme BU-1 6461940 YP_002019141.1 CDS Ppha_2329 NC_011060.1 2404519 2405112 R SMART: Rhodanese domain protein; KEGG: cch:Cag_0955 rhodanese-like; rhodanese domain-containing protein complement(2404519..2405112) Pelodictyon phaeoclathratiforme BU-1 6463829 YP_002019142.1 CDS Ppha_2330 NC_011060.1 2405211 2406638 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cph:Cpha266_0843 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(2405211..2406638) Pelodictyon phaeoclathratiforme BU-1 6462263 YP_002019143.1 CDS Ppha_2331 NC_011060.1 2406935 2407363 R KEGG: plt:Plut_0415 hypothetical protein; hypothetical protein complement(2406935..2407363) Pelodictyon phaeoclathratiforme BU-1 6462429 YP_002019144.1 CDS Ppha_2332 NC_011060.1 2407430 2407939 R KEGG: cph:Cpha266_1999 hypothetical protein; hypothetical protein complement(2407430..2407939) Pelodictyon phaeoclathratiforme BU-1 6462554 YP_002019145.1 CDS Ppha_2333 NC_011060.1 2407954 2408778 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_2000 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2407954..2408778) Pelodictyon phaeoclathratiforme BU-1 6462309 YP_002019146.1 CDS Ppha_2334 NC_011060.1 2408806 2410107 R PFAM: ribulose bisphosphate carboxylase large chain; KEGG: plt:Plut_0412 ribulose-bisphosphate carboxylase; RuBisCo-like protein complement(2408806..2410107) Pelodictyon phaeoclathratiforme BU-1 6461708 YP_002019147.1 CDS Ppha_2335 NC_011060.1 2410247 2411128 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cch:Cag_1641 aldolase; aldolase complement(2410247..2411128) Pelodictyon phaeoclathratiforme BU-1 6461961 YP_002019148.1 CDS Ppha_2336 NC_011060.1 2411182 2413302 R PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_1642 short chain dehydrogenase; short chain dehydrogenase complement(2411182..2413302) Pelodictyon phaeoclathratiforme BU-1 6462399 YP_002019149.1 CDS Ppha_2337 NC_011060.1 2413384 2413602 R KEGG: plt:Plut_0409 hypothetical protein; hypothetical protein complement(2413384..2413602) Pelodictyon phaeoclathratiforme BU-1 6462272 YP_002019150.1 CDS Ppha_2338 NC_011060.1 2413644 2414117 R PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD complement(2413644..2414117) Pelodictyon phaeoclathratiforme BU-1 6461603 YP_002019151.1 CDS Ppha_2339 NC_011060.1 2414473 2416800 R PFAM: metallophosphoesterase; protein of unknown function DUF323; SEFIR domain protein; KEGG: cph:Cpha266_0068 protein of unknown function DUF323; hypothetical protein complement(2414473..2416800) Pelodictyon phaeoclathratiforme BU-1 6462425 YP_002019152.1 CDS Ppha_2340 NC_011060.1 2416977 2417201 R TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cte:CT1521 hypothetical protein; addiction module protein complement(2416977..2417201) Pelodictyon phaeoclathratiforme BU-1 6462025 YP_002019153.1 CDS Ppha_2342 NC_011060.1 2417486 2418520 R KEGG: cch:Cag_1695 reverse transcriptase family protein; reverse transcriptase family protein complement(2417486..2418520) Pelodictyon phaeoclathratiforme BU-1 6460971 YP_002019154.1 CDS Ppha_2343 NC_011060.1 2418495 2418956 R PFAM: HRDC domain protein; KEGG: cch:Cag_1694 HRDC; HRDC domain-containing protein complement(2418495..2418956) Pelodictyon phaeoclathratiforme BU-1 6462139 YP_002019155.1 CDS Ppha_2344 NC_011060.1 2419160 2422732 R PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; hypothetical protein complement(2419160..2422732) Pelodictyon phaeoclathratiforme BU-1 6461626 YP_002019156.1 CDS Ppha_2345 NC_011060.1 2422915 2423535 D KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 2422915..2423535 Pelodictyon phaeoclathratiforme BU-1 6461172 YP_002019157.1 CDS Ppha_2347 NC_011060.1 2424302 2425782 R hypothetical protein complement(join(2424302..2425312,2425312..2425782)) Pelodictyon phaeoclathratiforme BU-1 6462330 YP_002019158.1 CDS Ppha_2348 NC_011060.1 2429541 2430146 D KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 2429541..2430146 Pelodictyon phaeoclathratiforme BU-1 6461480 YP_002019159.1 CDS Ppha_2349 NC_011060.1 2430394 2433954 R PFAM: metallophosphoesterase; protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_1893 protein of unknown function DUF323; hypothetical protein complement(2430394..2433954) Pelodictyon phaeoclathratiforme BU-1 6462345 YP_002019160.1 CDS recX NC_011060.1 2434184 2434666 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 2434184..2434666 Pelodictyon phaeoclathratiforme BU-1 6461422 YP_002019161.1 CDS pyrH NC_011060.1 2434688 2435398 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2434688..2435398) Pelodictyon phaeoclathratiforme BU-1 6461484 YP_002019162.1 CDS tsf NC_011060.1 2435487 2436353 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2435487..2436353) Pelodictyon phaeoclathratiforme BU-1 6462447 YP_002019163.1 CDS rpsB NC_011060.1 2436387 2437154 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2436387..2437154) Pelodictyon phaeoclathratiforme BU-1 6462084 YP_002019164.1 CDS rpsI NC_011060.1 2437314 2437703 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2437314..2437703) Pelodictyon phaeoclathratiforme BU-1 6462229 YP_002019165.1 CDS rplM NC_011060.1 2437721 2438170 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2437721..2438170) Pelodictyon phaeoclathratiforme BU-1 6461273 YP_002019166.1 CDS engA NC_011060.1 2438324 2439637 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2438324..2439637 Pelodictyon phaeoclathratiforme BU-1 6461128 YP_002019167.1 CDS Ppha_2357 NC_011060.1 2439702 2440598 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cph:Cpha266_2014 protein of unknown function DUF59; Cobyrinic acid ac-diamide synthase 2439702..2440598 Pelodictyon phaeoclathratiforme BU-1 6461804 YP_002019168.1 CDS Ppha_2358 NC_011060.1 2440694 2440954 D PFAM: nitrogen-fixing NifU domain protein; KEGG: plt:Plut_0398 NifU protein; nitrogen-fixing NifU domain-containing protein 2440694..2440954 Pelodictyon phaeoclathratiforme BU-1 6462439 YP_002019169.1 CDS Ppha_2359 NC_011060.1 2440963 2443440 R PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cph:Cpha266_2016 cell divisionFtsK/SpoIIIE; cell division protein FtsK complement(2440963..2443440) Pelodictyon phaeoclathratiforme BU-1 6462393 YP_002019170.1 CDS gcvT NC_011060.1 2443484 2444581 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(2443484..2444581) Pelodictyon phaeoclathratiforme BU-1 6461768 YP_002019171.1 CDS Ppha_2361 NC_011060.1 2444822 2445148 R KEGG: noc:Noc_0351 hypothetical protein; hypothetical protein complement(2444822..2445148) Pelodictyon phaeoclathratiforme BU-1 6461419 YP_002019172.1 CDS Ppha_2362 NC_011060.1 2445217 2445861 R PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1771 hypothetical protein; hypothetical protein complement(2445217..2445861) Pelodictyon phaeoclathratiforme BU-1 6461312 YP_002019173.1 CDS Ppha_2363 NC_011060.1 2445888 2446628 R PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1773 hypothetical protein; hypothetical protein complement(2445888..2446628) Pelodictyon phaeoclathratiforme BU-1 6462040 YP_002019174.1 CDS Ppha_2365 NC_011060.1 2447418 2449616 R KEGG: cph:Cpha266_2023 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(2447418..2449616) Pelodictyon phaeoclathratiforme BU-1 6461220 YP_002019175.1 CDS Ppha_2366 NC_011060.1 2449729 2451825 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(2449729..2451825) Pelodictyon phaeoclathratiforme BU-1 6462126 YP_002019176.1 CDS Ppha_2367 NC_011060.1 2451896 2452033 D hypothetical protein 2451896..2452033 Pelodictyon phaeoclathratiforme BU-1 6462213 YP_002019177.1 CDS Ppha_2368 NC_011060.1 2452058 2455003 D PFAM: peptidase M16 domain protein; KEGG: cph:Cpha266_2025 peptidase M16 domain protein; peptidase M16 domain-containing protein 2452058..2455003 Pelodictyon phaeoclathratiforme BU-1 6462522 YP_002019178.1 CDS Ppha_2369 NC_011060.1 2455040 2456119 D PFAM: permease YjgP/YjgQ family protein; KEGG: cch:Cag_0302 hypothetical protein; YjgP/YjgQ family permease 2455040..2456119 Pelodictyon phaeoclathratiforme BU-1 6461041 YP_002019179.1 CDS Ppha_2370 NC_011060.1 2456125 2456949 D PFAM: protein of unknown function DUF62; KEGG: cch:Cag_0301 hypothetical protein; hypothetical protein 2456125..2456949 Pelodictyon phaeoclathratiforme BU-1 6462573 YP_002019180.1 CDS Ppha_2371 NC_011060.1 2457031 2457789 D KEGG: gur:Gura_1460 hypothetical protein; hypothetical protein 2457031..2457789 Pelodictyon phaeoclathratiforme BU-1 6460977 YP_002019181.1 CDS Ppha_2372 NC_011060.1 2458646 2458879 D TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: gsu:GSU0056 hypothetical protein; addiction module protein 2458646..2458879 Pelodictyon phaeoclathratiforme BU-1 6461970 YP_002019182.1 CDS Ppha_2374 NC_011060.1 2459336 2459584 R hypothetical protein complement(2459336..2459584) Pelodictyon phaeoclathratiforme BU-1 6460855 YP_002019183.1 CDS Ppha_2375 NC_011060.1 2459922 2460188 D KEGG: amt:Amet_0300 hypothetical protein; hypothetical protein 2459922..2460188 Pelodictyon phaeoclathratiforme BU-1 6460858 YP_002019184.1 CDS Ppha_2376 NC_011060.1 2460199 2460441 D KEGG: amt:Amet_0301 hypothetical protein; hypothetical protein 2460199..2460441 Pelodictyon phaeoclathratiforme BU-1 6462452 YP_002019185.1 CDS Ppha_2377 NC_011060.1 2460497 2461237 D KEGG: cph:Cpha266_1718 hypothetical protein; hypothetical protein 2460497..2461237 Pelodictyon phaeoclathratiforme BU-1 6461001 YP_002019186.1 CDS Ppha_2378 NC_011060.1 2461402 2462703 R PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0902 protein of unknown function DUF323; hypothetical protein complement(2461402..2462703) Pelodictyon phaeoclathratiforme BU-1 6462002 YP_002019187.1 CDS Ppha_2379 NC_011060.1 2463026 2463988 D KEGG: cph:Cpha266_2183 hypothetical protein; hypothetical protein 2463026..2463988 Pelodictyon phaeoclathratiforme BU-1 6461666 YP_002019188.1 CDS Ppha_2380 NC_011060.1 2464110 2465009 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pvi:Cvib_0443 RNA polymerase, sigma 32 subunit, RpoH; RNA polymerase sigma-32 subunit RpoH complement(2464110..2465009) Pelodictyon phaeoclathratiforme BU-1 6462378 YP_002019189.1 CDS valS NC_011060.1 2465181 2467892 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2465181..2467892) Pelodictyon phaeoclathratiforme BU-1 6460885 YP_002019190.1 CDS Ppha_2382 NC_011060.1 2467910 2468587 R KEGG: plt:Plut_0385 peptidase S14, ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP complement(2467910..2468587) Pelodictyon phaeoclathratiforme BU-1 6460884 YP_002019191.1 CDS thyX NC_011060.1 2468858 2469508 D flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 2468858..2469508 Pelodictyon phaeoclathratiforme BU-1 6460875 YP_002019192.1 CDS Ppha_2384 NC_011060.1 2469505 2470344 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cph:Cpha266_2032 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(2469505..2470344) Pelodictyon phaeoclathratiforme BU-1 6460901 YP_002019193.1 CDS Ppha_2385 NC_011060.1 2470530 2473214 D PFAM: surface antigen (D15); Patatin; KEGG: pvi:Cvib_0421 surface antigen (D15); patatin 2470530..2473214 Pelodictyon phaeoclathratiforme BU-1 6460925 YP_002019194.1 CDS Ppha_2386 NC_011060.1 2473284 2474081 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2473284..2474081 Pelodictyon phaeoclathratiforme BU-1 6460872 YP_002019195.1 CDS Ppha_2387 NC_011060.1 2474086 2475777 D KEGG: cch:Cag_0292 hypothetical protein; hypothetical protein 2474086..2475777 Pelodictyon phaeoclathratiforme BU-1 6460860 YP_002019196.1 CDS Ppha_2388 NC_011060.1 2475790 2476110 R KEGG: cph:Cpha266_2036 transcriptional regulator, Fis family; XRE family transcriptional regulator complement(2475790..2476110) Pelodictyon phaeoclathratiforme BU-1 6463088 YP_002019197.1 CDS Ppha_2389 NC_011060.1 2476164 2476562 D KEGG: plt:Plut_0358 hypothetical protein; hypothetical protein 2476164..2476562 Pelodictyon phaeoclathratiforme BU-1 6460869 YP_002019198.1 CDS Ppha_2390 NC_011060.1 2476587 2477324 R PFAM: conserved hypothetical protein; KEGG: pvi:Cvib_0416 conserved hypothetical protein 730; hypothetical protein complement(2476587..2477324) Pelodictyon phaeoclathratiforme BU-1 6463113 YP_002019199.1 CDS Ppha_2391 NC_011060.1 2477350 2477913 R TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II complement(2477350..2477913) Pelodictyon phaeoclathratiforme BU-1 6463102 YP_002019200.1 CDS Ppha_2392 NC_011060.1 2477934 2479184 R KEGG: cch:Cag_0299 hypothetical protein; hypothetical protein complement(2477934..2479184) Pelodictyon phaeoclathratiforme BU-1 6463097 YP_002019201.1 CDS Ppha_2394 NC_011060.1 2479592 2479855 R KEGG: xom:XOO_3260 hypothetical protein; hypothetical protein complement(2479592..2479855) Pelodictyon phaeoclathratiforme BU-1 6460909 YP_002019202.1 CDS Ppha_2395 NC_011060.1 2479848 2480954 R PFAM: protein of unknown function DUF1016; KEGG: dol:Dole_2094 protein of unknown function DUF1016; hypothetical protein complement(2479848..2480954) Pelodictyon phaeoclathratiforme BU-1 6461337 YP_002019203.1 CDS Ppha_2397 NC_011060.1 2481659 2482591 R PFAM: diacylglycerol kinase catalytic region; KEGG: cph:Cpha266_2039 diacylglycerol kinase, catalytic region; diacylglycerol kinase catalytic subunit complement(2481659..2482591) Pelodictyon phaeoclathratiforme BU-1 6460910 YP_002019204.1 CDS Ppha_2398 NC_011060.1 2483088 2483591 D KEGG: cph:Cpha266_2043 hypothetical protein; hypothetical protein 2483088..2483591 Pelodictyon phaeoclathratiforme BU-1 6460926 YP_002019205.1 CDS Ppha_2399 NC_011060.1 2483673 2485055 R PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2070 aldehyde dehydrogenase; Aldehyde Dehydrogenase complement(2483673..2485055) Pelodictyon phaeoclathratiforme BU-1 6460890 YP_002019206.1 CDS Ppha_2400 NC_011060.1 2485117 2486076 R TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pvi:Cvib_0411 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A complement(2485117..2486076) Pelodictyon phaeoclathratiforme BU-1 6460990 YP_002019207.1 CDS Ppha_2401 NC_011060.1 2486113 2488233 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2486113..2488233) Pelodictyon phaeoclathratiforme BU-1 6460948 YP_002019208.1 CDS rpmE NC_011060.1 2488333 2488560 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2488333..2488560 Pelodictyon phaeoclathratiforme BU-1 6460939 YP_002019209.1 CDS frr NC_011060.1 2488609 2489169 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2488609..2489169 Pelodictyon phaeoclathratiforme BU-1 6460931 YP_002019210.1 CDS Ppha_2404 NC_011060.1 2489228 2489605 D KEGG: nha:Nham_0574 antirestriction protein; antirestriction protein 2489228..2489605 Pelodictyon phaeoclathratiforme BU-1 6460930 YP_002019211.1 CDS Ppha_2405 NC_011060.1 2489660 2490103 R PFAM: transposase IS200-family protein; KEGG: amr:AM1_C0253 transposase, IS200-family; transposase IS200-family protein complement(2489660..2490103) Pelodictyon phaeoclathratiforme BU-1 6460952 YP_002019212.1 CDS Ppha_2406 NC_011060.1 2490555 2491511 R KEGG: fps:FP1992 DNA recombination protein RmuC; hypothetical protein complement(2490555..2491511) Pelodictyon phaeoclathratiforme BU-1 6460918 YP_002019213.1 CDS Ppha_2407 NC_011060.1 2492544 2492714 R hypothetical protein complement(2492544..2492714) Pelodictyon phaeoclathratiforme BU-1 6461006 YP_002019214.1 CDS Ppha_2409 NC_011060.1 2493543 2493836 D PFAM: protein of unknown function DUF497; KEGG: rpe:RPE_1776 protein of unknown function DUF497; hypothetical protein 2493543..2493836 Pelodictyon phaeoclathratiforme BU-1 6460999 YP_002019215.1 CDS Ppha_2410 NC_011060.1 2493817 2494113 D KEGG: rpe:RPE_1775 hypothetical protein; hypothetical protein 2493817..2494113 Pelodictyon phaeoclathratiforme BU-1 6460982 YP_002019216.1 CDS Ppha_2411 NC_011060.1 2494171 2495406 R TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_2075 chlorophyllide reductase subunit Y; chlorophyllide reductase subunit Y complement(2494171..2495406) Pelodictyon phaeoclathratiforme BU-1 6460970 YP_002019217.1 CDS Ppha_2412 NC_011060.1 2495387 2496454 R PFAM: Sporulation domain protein; KEGG: cph:Cpha266_2076 sporulation domain protein; sporulation domain-containing protein complement(2495387..2496454) Pelodictyon phaeoclathratiforme BU-1 6460951 YP_002019218.1 CDS xseA NC_011060.1 2496658 2497866 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2496658..2497866 Pelodictyon phaeoclathratiforme BU-1 6461039 YP_002019219.1 CDS Ppha_2414 NC_011060.1 2497844 2498587 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(2497844..2498587) Pelodictyon phaeoclathratiforme BU-1 6460949 YP_002019220.1 CDS Ppha_2415 NC_011060.1 2498604 2498897 R PFAM: protein of unknown function DUF167; KEGG: cph:Cpha266_2081 protein of unknown function DUF167; hypothetical protein complement(2498604..2498897) Pelodictyon phaeoclathratiforme BU-1 6461050 YP_002019221.1 CDS gatC NC_011060.1 2498899 2499186 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(2498899..2499186) Pelodictyon phaeoclathratiforme BU-1 6461047 YP_002019222.1 CDS Ppha_2417 NC_011060.1 2499261 2500604 R KEGG: cph:Cpha266_2083 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I complement(2499261..2500604) Pelodictyon phaeoclathratiforme BU-1 6461051 YP_002019223.1 CDS Ppha_2418 NC_011060.1 2500906 2501919 R PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_2084 OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(2500906..2501919) Pelodictyon phaeoclathratiforme BU-1 6461071 YP_002019224.1 CDS Ppha_2419 NC_011060.1 2501949 2502692 R KEGG: cch:Cag_0316 hypothetical protein; hypothetical protein complement(2501949..2502692) Pelodictyon phaeoclathratiforme BU-1 6461094 YP_002019225.1 CDS Ppha_2420 NC_011060.1 2502737 2502943 R PFAM: Heavy metal transport/detoxification protein; KEGG: cph:Cpha266_2086 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(2502737..2502943) Pelodictyon phaeoclathratiforme BU-1 6461010 YP_002019226.1 CDS Ppha_2421 NC_011060.1 2503111 2503710 D PFAM: hypothetical protein-containing protein; Tetratricopeptide TPR_3; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pvi:Cvib_0399 hypothetical protein; hypothetical protein 2503111..2503710 Pelodictyon phaeoclathratiforme BU-1 6461101 YP_002019227.1 CDS Ppha_2422 NC_011060.1 2503707 2505113 D TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: pvi:Cvib_0398 isochorismate synthase; isochorismate synthase 2503707..2505113 Pelodictyon phaeoclathratiforme BU-1 6461095 YP_002019228.1 CDS Ppha_2423 NC_011060.1 2505110 2506891 D TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: cch:Cag_1700 menaquinone biosynthesis protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 2505110..2506891 Pelodictyon phaeoclathratiforme BU-1 6462454 YP_002019229.1 CDS Ppha_2424 NC_011060.1 2507078 2507800 D KEGG: mem:Memar_0122 hypothetical protein; hypothetical protein 2507078..2507800 Pelodictyon phaeoclathratiforme BU-1 6461156 YP_002019230.1 CDS Ppha_2425 NC_011060.1 2507818 2508885 D KEGG: mbn:Mboo_1423 PKD domain containing protein; hypothetical protein 2507818..2508885 Pelodictyon phaeoclathratiforme BU-1 6461203 YP_002019231.1 CDS Ppha_2426 NC_011060.1 2509079 2509828 R KEGG: rrs:RoseRS_0300 hypothetical protein; hypothetical protein complement(2509079..2509828) Pelodictyon phaeoclathratiforme BU-1 6461056 YP_002019232.1 CDS Ppha_2427 NC_011060.1 2510027 2513161 R PFAM: protein of unknown function DUF323; NACHT nucleoside triphosphatase; KEGG: cph:Cpha266_0460 protein of unknown function DUF323; signal transduction protein with Nacht domain complement(2510027..2513161) Pelodictyon phaeoclathratiforme BU-1 6461202 YP_002019233.1 CDS Ppha_2428 NC_011060.1 2513413 2513673 D KEGG: rfe:RF_0889 hypothetical protein; hypothetical protein 2513413..2513673 Pelodictyon phaeoclathratiforme BU-1 6461177 YP_002019234.1 CDS Ppha_2429 NC_011060.1 2513684 2514016 D KEGG: cph:Cpha266_2540 hypothetical protein; hypothetical protein 2513684..2514016 Pelodictyon phaeoclathratiforme BU-1 6461198 YP_002019235.1 CDS Ppha_2430 NC_011060.1 2514032 2516767 R PFAM: restriction endonuclease; SMART: AAA ATPase; KEGG: cph:Cpha266_0840 ribosome assembly protein 4 (RSA4); signal transduction protein with Nacht domain complement(2514032..2516767) Pelodictyon phaeoclathratiforme BU-1 6461143 YP_002019236.1 CDS Ppha_2431 NC_011060.1 2516764 2517420 R KEGG: lwe:lwe0236 transcriptional regulator, MarR family; hypothetical protein complement(2516764..2517420) Pelodictyon phaeoclathratiforme BU-1 6461223 YP_002019237.1 CDS Ppha_2432 NC_011060.1 2518002 2518835 D PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1845 thioesterase, menaquinone synthesis protein; alpha/beta hydrolase fold protein 2518002..2518835 Pelodictyon phaeoclathratiforme BU-1 6461106 YP_002019238.1 CDS Ppha_2433 NC_011060.1 2518837 2519658 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2518837..2519658 Pelodictyon phaeoclathratiforme BU-1 6461321 YP_002019239.1 CDS Ppha_2434 NC_011060.1 2519655 2520728 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cph:Cpha266_2092 O-succinylbenzoate-CoA synthase; mandelate racemase/muconate lactonizing protein 2519655..2520728 Pelodictyon phaeoclathratiforme BU-1 6461233 YP_002019240.1 CDS Ppha_2435 NC_011060.1 2520716 2522158 D TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cch:Cag_1672 O-succinylbenzoate-CoA ligase; o-succinylbenzoate--CoA ligase 2520716..2522158 Pelodictyon phaeoclathratiforme BU-1 6461251 YP_002019241.1 CDS Ppha_2436 NC_011060.1 2522126 2522671 R KEGG: plt:Plut_0325 hypothetical protein; hypothetical protein complement(2522126..2522671) Pelodictyon phaeoclathratiforme BU-1 6461222 YP_002019242.1 CDS Ppha_2437 NC_011060.1 2522678 2523424 R PFAM: dihydrodipicolinate reductase; KEGG: plt:Plut_0324 dihydrodipicolinate reductase; Dihydrodipicolinate reductase complement(2522678..2523424) Pelodictyon phaeoclathratiforme BU-1 6461248 YP_002019243.1 CDS Ppha_2438 NC_011060.1 2523487 2524383 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cph:Cpha266_2096 chromosome segregation DNA-binding protein; parB-like partition protein complement(2523487..2524383) Pelodictyon phaeoclathratiforme BU-1 6461213 YP_002019244.1 CDS Ppha_2439 NC_011060.1 2524399 2525196 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cch:Cag_1803 ATPase, ParA family; Cobyrinic acid ac-diamide synthase complement(2524399..2525196) Pelodictyon phaeoclathratiforme BU-1 6461020 YP_002019245.1 CDS Ppha_2441 NC_011060.1 2525632 2527014 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cph:Cpha266_2099 magnesium transporter; magnesium transporter 2525632..2527014 Pelodictyon phaeoclathratiforme BU-1 6462312 YP_002019246.1 CDS Ppha_2442 NC_011060.1 2527030 2528703 D PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cch:Cag_1800 electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2527030..2528703 Pelodictyon phaeoclathratiforme BU-1 6461207 YP_002019247.1 CDS Ppha_2444 NC_011060.1 2529064 2529963 R KEGG: cch:Cag_1240 hypothetical protein; hypothetical protein complement(2529064..2529963) Pelodictyon phaeoclathratiforme BU-1 6461299 YP_002019248.1 CDS Ppha_2445 NC_011060.1 2530108 2530986 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_0384 hypothetical protein; NmrA family protein complement(2530108..2530986) Pelodictyon phaeoclathratiforme BU-1 6461271 YP_002019249.1 CDS Ppha_2447 NC_011060.1 2531302 2531688 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: xom:XOO_4210 virulence associated protein; XRE family plasmid maintenance system antidote protein 2531302..2531688 Pelodictyon phaeoclathratiforme BU-1 6461241 YP_002019250.1 CDS Ppha_2448 NC_011060.1 2531693 2532487 R TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: cph:Cpha266_2044 CRISPR-associated protein Cas6; CRISPR-associated protein Cas6 complement(2531693..2532487) Pelodictyon phaeoclathratiforme BU-1 6461342 YP_002019251.1 CDS Ppha_2449 NC_011060.1 2532500 2534005 R KEGG: cph:Cpha266_2045 hypothetical protein; hypothetical protein complement(2532500..2534005) Pelodictyon phaeoclathratiforme BU-1 6461373 YP_002019252.1 CDS Ppha_2450 NC_011060.1 2533978 2535276 R KEGG: cph:Cpha266_2046 CRISPR-associated RAMP protein, Csm5 family; hypothetical protein complement(2533978..2535276) Pelodictyon phaeoclathratiforme BU-1 6461395 YP_002019253.1 CDS Ppha_2451 NC_011060.1 2535282 2536346 R TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; KEGG: cph:Cpha266_2047 CRISPR-associated RAMP protein, Csm4 family; Csm4 family CRISPR-associated RAMP protein complement(2535282..2536346) Pelodictyon phaeoclathratiforme BU-1 6461345 YP_002019254.1 CDS Ppha_2452 NC_011060.1 2536343 2537200 R TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: tpt:Tpet_1095 CRISPR-associated RAMP protein, Csm3 family; Csm3 family CRISPR-associated RAMP protein complement(2536343..2537200) Pelodictyon phaeoclathratiforme BU-1 6461341 YP_002019255.1 CDS Ppha_2453 NC_011060.1 2537216 2537635 R TIGRFAM: CRISPR-associated protein, Csm2 family; PFAM: protein of unknown function DUF310; KEGG: mth:MTH1081 hypothetical protein; CRISPR-associated protein, Csm2 family complement(2537216..2537635) Pelodictyon phaeoclathratiforme BU-1 6462413 YP_002019256.1 CDS Ppha_2454 NC_011060.1 2537649 2539934 R TIGRFAM: CRISPR-associated protein, Csm1 family; KEGG: cph:Cpha266_2050 CRISPR-associated protein, Csm1 family; Csm1 family CRISPR-associated protein complement(2537649..2539934) Pelodictyon phaeoclathratiforme BU-1 6461195 YP_002019257.1 CDS Ppha_2456 NC_011060.1 2540375 2540770 R KEGG: mmw:Mmwyl1_2687 hypothetical protein; hypothetical protein complement(2540375..2540770) Pelodictyon phaeoclathratiforme BU-1 6461307 YP_002019258.1 CDS Ppha_2457 NC_011060.1 2540778 2541350 R KEGG: cph:Cpha266_2052 hypothetical protein; hypothetical protein complement(2540778..2541350) Pelodictyon phaeoclathratiforme BU-1 6461361 YP_002019259.1 CDS Ppha_2458 NC_011060.1 2541387 2541671 R TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: cph:Cpha266_2055 CRISPR-associated protein Cas2; CRISPR-associated protein Cas2 complement(2541387..2541671) Pelodictyon phaeoclathratiforme BU-1 6461702 YP_002019260.1 CDS Ppha_2459 NC_011060.1 2541825 2544008 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: RNA-directed DNA polymerase (Reverse transcriptase); protein of unknown function DUF48; KEGG: cph:Cpha266_2054 CRISPR-associated protein Cas1; CRISPR-associated protein Cas1 2541825..2544008 Pelodictyon phaeoclathratiforme BU-1 6461403 YP_002019261.1 CDS Ppha_2460 NC_011060.1 2547361 2548551 R PFAM: filamentation induced by cAMP protein Fic; KEGG: plt:Plut_1908 hypothetical protein; filamentation induced by cAMP protein fic complement(2547361..2548551) Pelodictyon phaeoclathratiforme BU-1 6461653 YP_002019262.1 CDS mnmA NC_011060.1 2549170 2550255 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2549170..2550255 Pelodictyon phaeoclathratiforme BU-1 6462430 YP_002019263.1 CDS Ppha_2462 NC_011060.1 2550271 2550948 D PFAM: phospholipase/Carboxylesterase; KEGG: plt:Plut_0317 serine esterase; phospholipase/Carboxylesterase 2550271..2550948 Pelodictyon phaeoclathratiforme BU-1 6461844 YP_002019264.1 CDS metH NC_011060.1 2551027 2554749 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2551027..2554749 Pelodictyon phaeoclathratiforme BU-1 6461048 YP_002019265.1 CDS Ppha_2464 NC_011060.1 2554892 2555434 R KEGG: cph:Cpha266_1809 metal dependent phosphohydrolase; metal dependent phosphohydrolase complement(2554892..2555434) Pelodictyon phaeoclathratiforme BU-1 6462356 YP_002019266.1 CDS Ppha_2465 NC_011060.1 2555680 2556252 R hypothetical protein complement(2555680..2556252) Pelodictyon phaeoclathratiforme BU-1 6461206 YP_002019267.1 CDS Ppha_2466 NC_011060.1 2556427 2557206 R KEGG: cph:Cpha266_0052 hypothetical protein; hypothetical protein complement(2556427..2557206) Pelodictyon phaeoclathratiforme BU-1 6461785 YP_002019268.1 CDS Ppha_2467 NC_011060.1 2557291 2557842 R hypothetical protein complement(2557291..2557842) Pelodictyon phaeoclathratiforme BU-1 6462656 YP_002019269.1 CDS Ppha_2468 NC_011060.1 2558248 2558475 D KEGG: cph:Cpha266_0202 chlorosome envelope protein B; chlorosome envelope protein B 2558248..2558475 Pelodictyon phaeoclathratiforme BU-1 6462678 YP_002019270.1 CDS Ppha_2469 NC_011060.1 2558553 2559026 R KEGG: cph:Cpha266_2141 hypothetical protein; hypothetical protein complement(2558553..2559026) Pelodictyon phaeoclathratiforme BU-1 6462394 YP_002019271.1 CDS Ppha_2470 NC_011060.1 2559031 2560680 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cph:Cpha266_2142 peptidoglycan-binding domain 1 protein; peptidoglycan-binding domain 1 protein complement(2559031..2560680) Pelodictyon phaeoclathratiforme BU-1 6462223 YP_002019272.1 CDS Ppha_2471 NC_011060.1 2560697 2561422 R KEGG: cph:Cpha266_2143 hypothetical protein; hypothetical protein complement(2560697..2561422) Pelodictyon phaeoclathratiforme BU-1 6461563 YP_002019273.1 CDS Ppha_2472 NC_011060.1 2561623 2562240 R KEGG: pvi:Cvib_0378 hypothetical protein; hypothetical protein complement(2561623..2562240) Pelodictyon phaeoclathratiforme BU-1 6461583 YP_002019274.1 CDS Ppha_2473 NC_011060.1 2562264 2562992 R PFAM: protein of unknown function DUF541; KEGG: cph:Cpha266_2145 protein of unknown function DUF541; hypothetical protein complement(2562264..2562992) Pelodictyon phaeoclathratiforme BU-1 6461026 YP_002019275.1 CDS Ppha_2474 NC_011060.1 2563123 2563617 R KEGG: sal:Sala_1348 hypothetical protein; hypothetical protein complement(2563123..2563617) Pelodictyon phaeoclathratiforme BU-1 6461873 YP_002019276.1 CDS Ppha_2476 NC_011060.1 2563962 2564606 R PFAM: NLP/P60 protein; KEGG: cph:Cpha266_1344 NLP/P60 protein; NLP/P60 protein complement(2563962..2564606) Pelodictyon phaeoclathratiforme BU-1 6461396 YP_002019277.1 CDS Ppha_2477 NC_011060.1 2564835 2566001 R KEGG: mxa:MXAN_0010 CapA family protein; CapA family protein complement(2564835..2566001) Pelodictyon phaeoclathratiforme BU-1 6463678 YP_002019278.1 CDS Ppha_2478 NC_011060.1 2566001 2567386 R KEGG: fps:FP1905 hypothetical protein; hypothetical protein complement(2566001..2567386) Pelodictyon phaeoclathratiforme BU-1 6463675 YP_002019279.1 CDS Ppha_2479 NC_011060.1 2567452 2568936 R PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: fps:FP1906 probable sugar O-acetyltransferase precursor; membrane bound O-acyl transferase MBOAT family protein complement(2567452..2568936) Pelodictyon phaeoclathratiforme BU-1 6461022 YP_002019280.1 CDS Ppha_2480 NC_011060.1 2568917 2570329 R KEGG: fps:FP1907 hypothetical protein; hypothetical protein complement(2568917..2570329) Pelodictyon phaeoclathratiforme BU-1 6463676 YP_002019281.1 CDS Ppha_2481 NC_011060.1 2570436 2571131 R KEGG: cph:Cpha266_2147 hypothetical protein; hypothetical protein complement(2570436..2571131) Pelodictyon phaeoclathratiforme BU-1 6461928 YP_002019282.1 CDS Ppha_2482 NC_011060.1 2571226 2572137 D TIGRFAM: 6-phosphogluconolactonase; KEGG: cph:Cpha266_2149 6-phosphogluconolactonase; 6-phosphogluconolactonase 2571226..2572137 Pelodictyon phaeoclathratiforme BU-1 6463674 YP_002019283.1 CDS Ppha_2483 NC_011060.1 2572128 2573564 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(2572128..2573564) Pelodictyon phaeoclathratiforme BU-1 6463673 YP_002019284.1 CDS Ppha_2484 NC_011060.1 2573577 2574476 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(2573577..2574476) Pelodictyon phaeoclathratiforme BU-1 6463672 YP_002019285.1 CDS Ppha_2485 NC_011060.1 2574517 2575680 R PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2155 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2574517..2575680) Pelodictyon phaeoclathratiforme BU-1 6463671 YP_002019286.1 CDS Ppha_2486 NC_011060.1 2575811 2576281 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pvi:Cvib_0364 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(2575811..2576281) Pelodictyon phaeoclathratiforme BU-1 6463670 YP_002019287.1 CDS Ppha_2487 NC_011060.1 2576339 2576899 R KEGG: plt:Plut_0302 outer surface protein; outer surface protein complement(2576339..2576899) Pelodictyon phaeoclathratiforme BU-1 6463664 YP_002019288.1 CDS Ppha_2488 NC_011060.1 2576972 2577760 R PFAM: Patatin; KEGG: cph:Cpha266_2157 patatin; patatin complement(2576972..2577760) Pelodictyon phaeoclathratiforme BU-1 6463661 YP_002019289.1 CDS Ppha_2489 NC_011060.1 2577757 2579148 R PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2158 aldehyde dehydrogenase; Aldehyde Dehydrogenase complement(2577757..2579148) Pelodictyon phaeoclathratiforme BU-1 6463667 YP_002019290.1 CDS Ppha_2490 NC_011060.1 2579326 2580081 D PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_2160 integral membrane protein TerC; integral membrane protein TerC 2579326..2580081 Pelodictyon phaeoclathratiforme BU-1 6463662 YP_002019291.1 CDS Ppha_2491 NC_011060.1 2580078 2580899 D PFAM: UspA domain protein; KEGG: cph:Cpha266_2161 UspA domain protein; UspA domain-containing protein 2580078..2580899 Pelodictyon phaeoclathratiforme BU-1 6463658 YP_002019292.1 CDS Ppha_2492 NC_011060.1 2580983 2581792 R PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cph:Cpha266_2163 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(2580983..2581792) Pelodictyon phaeoclathratiforme BU-1 6463652 YP_002019293.1 CDS Ppha_2493 NC_011060.1 2581789 2582598 R KEGG: cph:Cpha266_2164 hypothetical protein; hypothetical protein complement(2581789..2582598) Pelodictyon phaeoclathratiforme BU-1 6463651 YP_002019294.1 CDS Ppha_2494 NC_011060.1 2582768 2583433 R KEGG: syw:SYNW2410 hypothetical protein; hypothetical protein complement(2582768..2583433) Pelodictyon phaeoclathratiforme BU-1 6463649 YP_002019295.1 CDS Ppha_2495 NC_011060.1 2584009 2585250 D PFAM: peptidase U32; KEGG: cph:Cpha266_2165 peptidase U32; peptidase U32 2584009..2585250 Pelodictyon phaeoclathratiforme BU-1 6463646 YP_002019296.1 CDS Ppha_2496 NC_011060.1 2585322 2586401 D KEGG: cph:Cpha266_2166 hydrogenase/sulfur reductase, beta subunit; hydrogenase/sulfur reductase subunit beta 2585322..2586401 Pelodictyon phaeoclathratiforme BU-1 6463648 YP_002019297.1 CDS Ppha_2497 NC_011060.1 2586362 2587279 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cch:Cag_1567 hydrogenase/sulfur reductase, gamma subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2586362..2587279 Pelodictyon phaeoclathratiforme BU-1 6463647 YP_002019298.1 CDS Ppha_2498 NC_011060.1 2587281 2588057 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cph:Cpha266_2168 NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 2587281..2588057 Pelodictyon phaeoclathratiforme BU-1 6463643 YP_002019299.1 CDS Ppha_2499 NC_011060.1 2588047 2589321 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: cph:Cpha266_2169 nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase large subunit 2588047..2589321 Pelodictyon phaeoclathratiforme BU-1 6463642 YP_002019300.1 CDS Ppha_2501 NC_011060.1 2589662 2590168 D KEGG: cph:Cpha266_0524 hypothetical protein; hypothetical protein 2589662..2590168 Pelodictyon phaeoclathratiforme BU-1 6463639 YP_002019301.1 CDS Ppha_2503 NC_011060.1 2590409 2590672 D TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: psp:PSPPH_B0056 DNA-damage-inducible protein; RelB/DinJ family addiction module antitoxin 2590409..2590672 Pelodictyon phaeoclathratiforme BU-1 6463637 YP_002019302.1 CDS Ppha_2504 NC_011060.1 2590659 2590940 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: nmu:Nmul_A2035 hypothetical protein; RelE/StbE family addiction module toxin 2590659..2590940 Pelodictyon phaeoclathratiforme BU-1 6463820 YP_002019303.1 CDS Ppha_2506 NC_011060.1 2591345 2591737 R KEGG: cbe:Cbei_2837 plasmid pRiA4b ORF-3 family protein; plasmid pRiA4b ORF-3 family protein complement(2591345..2591737) Pelodictyon phaeoclathratiforme BU-1 6461955 YP_002019304.1 CDS Ppha_2512 NC_011060.1 2593425 2594561 D KEGG: mgm:Mmc1_1577 hypothetical protein; hypothetical protein 2593425..2594561 Pelodictyon phaeoclathratiforme BU-1 6463805 YP_002019305.1 CDS Ppha_2513 NC_011060.1 2594554 2595228 D KEGG: dps:DPPB62 hypothetical protein; hypothetical protein 2594554..2595228 Pelodictyon phaeoclathratiforme BU-1 6463804 YP_002019306.1 CDS Ppha_2515 NC_011060.1 2595953 2596252 R KEGG: cph:Cpha266_0290 hypothetical protein; hypothetical protein complement(2595953..2596252) Pelodictyon phaeoclathratiforme BU-1 6463801 YP_002019307.1 CDS Ppha_2520 NC_011060.1 2598646 2598945 R KEGG: gur:Gura_1489 hypothetical protein; hypothetical protein complement(2598646..2598945) Pelodictyon phaeoclathratiforme BU-1 6463787 YP_002019308.1 CDS Ppha_2521 NC_011060.1 2599004 2599198 R KEGG: bbr:BB1689 hypothetical protein; hypothetical protein complement(2599004..2599198) Pelodictyon phaeoclathratiforme BU-1 6463786 YP_002019309.1 CDS Ppha_2522 NC_011060.1 2599331 2599738 R hypothetical protein complement(2599331..2599738) Pelodictyon phaeoclathratiforme BU-1 6463783 YP_002019310.1 CDS Ppha_2523 NC_011060.1 2599717 2600133 R KEGG: rpe:RPE_2175 hypothetical protein; hypothetical protein complement(2599717..2600133) Pelodictyon phaeoclathratiforme BU-1 6463779 YP_002019311.1 CDS Ppha_2526 NC_011060.1 2600866 2601072 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1405 transcriptional regulator, AbrB family; AbrB family transcriptional regulator complement(2600866..2601072) Pelodictyon phaeoclathratiforme BU-1 6463776 YP_002019312.1 CDS Ppha_2529 NC_011060.1 2601709 2601990 R PFAM: helix-turn-helix domain protein; KEGG: amt:Amet_3370 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2601709..2601990) Pelodictyon phaeoclathratiforme BU-1 6463769 YP_002019313.1 CDS Ppha_2532 NC_011060.1 2602498 2602971 D KEGG: plt:Plut_0847 conserved hypothetical protein; conserved domain; hypothetical protein 2602498..2602971 Pelodictyon phaeoclathratiforme BU-1 6463761 YP_002019314.1 CDS Ppha_2533 NC_011060.1 2603482 2604801 R KEGG: cph:Cpha266_2628 hypothetical protein; hypothetical protein complement(2603482..2604801) Pelodictyon phaeoclathratiforme BU-1 6463759 YP_002019315.1 CDS Ppha_2536 NC_011060.1 2605800 2606564 R PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: cph:Cpha266_1210 DNA topoisomerase, type IA, zn finger domain protein; DNA topoisomerase type IA zn finger domain-containing protein complement(2605800..2606564) Pelodictyon phaeoclathratiforme BU-1 6463747 YP_002019316.1 CDS Ppha_2537 NC_011060.1 2606731 2606955 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ccr:CC_2903 cold-shock domain family protein; cold-shock DNA-binding domain-containing protein complement(2606731..2606955) Pelodictyon phaeoclathratiforme BU-1 6463744 YP_002019317.1 CDS Ppha_2538 NC_011060.1 2607769 2608197 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: pvi:Cvib_0358 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2607769..2608197) Pelodictyon phaeoclathratiforme BU-1 6463742 YP_002019318.1 CDS Ppha_2539 NC_011060.1 2608335 2609417 R PFAM: MscS Mechanosensitive ion channel; KEGG: plt:Plut_0292 hypothetical protein; mechanosensitive ion channel MscS complement(2608335..2609417) Pelodictyon phaeoclathratiforme BU-1 6463740 YP_002019319.1 CDS Ppha_2540 NC_011060.1 2609469 2610662 R PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2609469..2610662) Pelodictyon phaeoclathratiforme BU-1 6463738 YP_002019320.1 CDS Ppha_2541 NC_011060.1 2610823 2611338 R KEGG: cph:Cpha266_2271 acetyltransferase, CysE/LacA/LpxA/NodL family; CysE/LacA/LpxA/NodL family acetyltransferase complement(2610823..2611338) Pelodictyon phaeoclathratiforme BU-1 6463739 YP_002019321.1 CDS Ppha_2542 NC_011060.1 2611577 2611834 D PFAM: bacteriochlorophyll C binding protein; KEGG: plt:Plut_2013 chlorosome envelope protein E; bacteriochlorophyll C binding protein 2611577..2611834 Pelodictyon phaeoclathratiforme BU-1 6463736 YP_002019322.1 CDS Ppha_2543 NC_011060.1 2612177 2612707 D KEGG: cph:Cpha266_1383 hypothetical protein; hypothetical protein 2612177..2612707 Pelodictyon phaeoclathratiforme BU-1 6463734 YP_002019323.1 CDS Ppha_2544 NC_011060.1 2612725 2613231 D KEGG: cph:Cpha266_1384 transposase family protein; transposase family protein 2612725..2613231 Pelodictyon phaeoclathratiforme BU-1 6463733 YP_002019324.1 CDS Ppha_2545 NC_011060.1 2613346 2614290 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cch:Cag_0411 AraC family transcripiotnal regulator; AraC family transcripiotnal regulator 2613346..2614290 Pelodictyon phaeoclathratiforme BU-1 6463731 YP_002019325.1 CDS Ppha_2546 NC_011060.1 2614371 2615105 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0353 ABC transporter related; ABC transporter-like protein 2614371..2615105 Pelodictyon phaeoclathratiforme BU-1 6463730 YP_002019326.1 CDS Ppha_2547 NC_011060.1 2615142 2616569 D SMART: metal-dependent phosphohydrolase HD region; KEGG: cph:Cpha266_2274 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2615142..2616569 Pelodictyon phaeoclathratiforme BU-1 6463727 YP_002019327.1 CDS Ppha_2548 NC_011060.1 2616679 2617002 D KEGG: pvi:Cvib_0351 hypothetical protein; hypothetical protein 2616679..2617002 Pelodictyon phaeoclathratiforme BU-1 6463725 YP_002019328.1 CDS Ppha_2549 NC_011060.1 2617006 2617797 D PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1627 3-oxoadipate enol-lactonase; alpha/beta hydrolase fold protein 2617006..2617797 Pelodictyon phaeoclathratiforme BU-1 6463723 YP_002019329.1 CDS Ppha_2550 NC_011060.1 2617819 2619120 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2617819..2619120) Pelodictyon phaeoclathratiforme BU-1 6463722 YP_002019330.1 CDS rpsU NC_011060.1 2619202 2619399 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2619202..2619399) Pelodictyon phaeoclathratiforme BU-1 6463719 YP_002019331.1 CDS Ppha_2552 NC_011060.1 2619425 2619985 R KEGG: plt:Plut_0282 hypothetical protein; hypothetical protein complement(2619425..2619985) Pelodictyon phaeoclathratiforme BU-1 6463720 YP_002019332.1 CDS Ppha_2553 NC_011060.1 2620168 2621541 R PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: plt:Plut_0281 CBS; cysteine synthase complement(2620168..2621541) Pelodictyon phaeoclathratiforme BU-1 6463716 YP_002019333.1 CDS Ppha_2554 NC_011060.1 2621798 2622895 D KEGG: cch:Cag_1635 alanine racemase region; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 2621798..2622895 Pelodictyon phaeoclathratiforme BU-1 6463713 YP_002019334.1 CDS Ppha_2555 NC_011060.1 2622892 2623410 D SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: cch:Cag_1625 helix-hairpin-helix DNA-binding, class 1; helix-hairpin-helix DNA-binding class 1 2622892..2623410 Pelodictyon phaeoclathratiforme BU-1 6463715 YP_002019335.1 CDS Ppha_2556 NC_011060.1 2623410 2624294 D KEGG: cph:Cpha266_2286 hypothetical protein; hypothetical protein 2623410..2624294 Pelodictyon phaeoclathratiforme BU-1 6463711 YP_002019336.1 CDS Ppha_2557 NC_011060.1 2624510 2625967 D PFAM: ATPase; KEGG: rms:RMA_0723 archaeal ATPase family protein; ATPase 2624510..2625967 Pelodictyon phaeoclathratiforme BU-1 6463706 YP_002019337.1 CDS Ppha_2558 NC_011060.1 2626013 2626219 R TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: gur:Gura_1405 transcriptional regulator, AbrB family; AbrB family transcriptional regulator complement(2626013..2626219) Pelodictyon phaeoclathratiforme BU-1 6462533 YP_002019338.1 CDS Ppha_2559 NC_011060.1 2626414 2627439 R TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: cph:Cpha266_2287 aspartate semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase complement(2626414..2627439) Pelodictyon phaeoclathratiforme BU-1 6462537 YP_002019339.1 CDS Ppha_2560 NC_011060.1 2627446 2628504 R TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: plt:Plut_0276 dihydrouridine synthase TIM-barrel protein nifR3; hypothetical protein complement(2627446..2628504) Pelodictyon phaeoclathratiforme BU-1 6461366 YP_002019340.1 CDS recA NC_011060.1 2628507 2629553 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2628507..2629553) Pelodictyon phaeoclathratiforme BU-1 6462500 YP_002019341.1 CDS Ppha_2562 NC_011060.1 2629599 2630777 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; KEGG: cph:Cpha266_2290 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2629599..2630777) Pelodictyon phaeoclathratiforme BU-1 6462279 YP_002019342.1 CDS Ppha_2563 NC_011060.1 2631008 2632294 D PFAM: peptidase M16 domain protein; KEGG: cch:Cag_0239 peptidase, M16 family; peptidase M16 domain-containing protein 2631008..2632294 Pelodictyon phaeoclathratiforme BU-1 6461700 YP_002019343.1 CDS Ppha_2564 NC_011060.1 2632391 2633671 D PFAM: trigger factor domain protein; trigger factor domain; KEGG: pvi:Cvib_0337 trigger factor; trigger factor domain-containing protein 2632391..2633671 Pelodictyon phaeoclathratiforme BU-1 6462176 YP_002019344.1 CDS acpS NC_011060.1 2633750 2634112 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(2633750..2634112) Pelodictyon phaeoclathratiforme BU-1 6462259 YP_002019345.1 CDS Ppha_2566 NC_011060.1 2634126 2635025 R KEGG: cph:Cpha266_2293 nicotinate-nucleotide pyrophosphorylase [carboxylating]; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(2634126..2635025) Pelodictyon phaeoclathratiforme BU-1 6461444 YP_002019346.1 CDS Ppha_2567 NC_011060.1 2635326 2635661 D KEGG: cjr:CJE1434 hypothetical protein; hypothetical protein 2635326..2635661 Pelodictyon phaeoclathratiforme BU-1 6462497 YP_002019347.1 CDS Ppha_2568 NC_011060.1 2635727 2636104 D TIGRFAM: dihydroneopterin aldolase; KEGG: pvi:Cvib_0334 dihydroneopterin aldolase; dihydroneopterin aldolase 2635727..2636104 Pelodictyon phaeoclathratiforme BU-1 6462512 YP_002019348.1 CDS Ppha_2569 NC_011060.1 2636109 2636636 D KEGG: plt:Plut_0268 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2636109..2636636 Pelodictyon phaeoclathratiforme BU-1 6462186 YP_002019349.1 CDS Ppha_2570 NC_011060.1 2636691 2637845 R PFAM: Anion-transporting ATPase; KEGG: cch:Cag_0217 anion-transporting ATPase; arsenite-transporting ATPase complement(2636691..2637845) Pelodictyon phaeoclathratiforme BU-1 6461779 YP_002019350.1 CDS Ppha_2571 NC_011060.1 2637893 2639419 R KEGG: cch:Cag_0218 hypothetical protein; hypothetical protein complement(2637893..2639419) Pelodictyon phaeoclathratiforme BU-1 6462604 YP_002019351.1 CDS Ppha_2572 NC_011060.1 2639599 2639841 R PFAM: bacteriochlorophyll C binding protein; KEGG: plt:Plut_0265 chlorosome envelope protein A; bacteriochlorophyll C binding protein complement(2639599..2639841) Pelodictyon phaeoclathratiforme BU-1 6462608 YP_002019352.1 CDS Ppha_2573 NC_011060.1 2639990 2640409 R KEGG: cch:Cag_0220 chlorosome envelope protein C; chlorosome envelope protein C complement(2639990..2640409) Pelodictyon phaeoclathratiforme BU-1 6462607 YP_002019353.1 CDS Ppha_2574 NC_011060.1 2640537 2641763 R KEGG: cph:Cpha266_2301 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(2640537..2641763) Pelodictyon phaeoclathratiforme BU-1 6461680 YP_002019354.1 CDS Ppha_2575 NC_011060.1 2641992 2642786 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cph:Cpha266_2302 dihydroorotate oxidase B, electron transfer subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2641992..2642786 Pelodictyon phaeoclathratiforme BU-1 6462469 YP_002019355.1 CDS Ppha_2576 NC_011060.1 2642862 2643338 D TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cch:Cag_0223 single-strand binding protein; single-strand binding protein 2642862..2643338 Pelodictyon phaeoclathratiforme BU-1 6462575 YP_002019356.1 CDS Ppha_2577 NC_011060.1 2643489 2644529 D TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: pvi:Cvib_0325 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 2643489..2644529 Pelodictyon phaeoclathratiforme BU-1 6463708 YP_002019357.1 CDS Ppha_2578 NC_011060.1 2644544 2645545 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cch:Cag_0225 NAD-dependent epimerase/dehydratase family protein/3-beta hydroxysteroid dehydrogenase/isomerase family protein; NAD-dependent epimerase/dehydratase complement(2644544..2645545) Pelodictyon phaeoclathratiforme BU-1 6463705 YP_002019358.1 CDS Ppha_2579 NC_011060.1 2645774 2646976 D PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: cch:Cag_0226 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 2645774..2646976 Pelodictyon phaeoclathratiforme BU-1 6463702 YP_002019359.1 CDS Ppha_2580 NC_011060.1 2647299 2649809 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor; TonB-dependent receptor 2647299..2649809 Pelodictyon phaeoclathratiforme BU-1 6463699 YP_002019360.1 CDS Ppha_2581 NC_011060.1 2649962 2653765 D KEGG: cph:Cpha266_2311 hydrogenobyrinic acid a,c-diamide cobaltochelatase; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase; magnesium chelatase subunit H 2649962..2653765 Pelodictyon phaeoclathratiforme BU-1 6461138 YP_002019361.1 CDS Ppha_2582 NC_011060.1 2653961 2654368 D KEGG: cph:Cpha266_2312 hypothetical protein; hypothetical protein 2653961..2654368 Pelodictyon phaeoclathratiforme BU-1 6462559 YP_002019362.1 CDS Ppha_2583 NC_011060.1 2654503 2658333 D catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis; magnesium chelatase subunit H 2654503..2658333 Pelodictyon phaeoclathratiforme BU-1 6463694 YP_002019363.1 CDS Ppha_2584 NC_011060.1 2658394 2659092 D catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine; Mg-protoporphyrin IX methyl transferase 2658394..2659092 Pelodictyon phaeoclathratiforme BU-1 6463690 YP_002019364.1 CDS Ppha_2585 NC_011060.1 2659239 2660879 D KEGG: pvi:Cvib_0316 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 2659239..2660879 Pelodictyon phaeoclathratiforme BU-1 6463691 YP_002019365.1 CDS Ppha_2586 NC_011060.1 2660982 2661263 R TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: plt:Plut_1930 addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin complement(2660982..2661263) Pelodictyon phaeoclathratiforme BU-1 6463681 YP_002019366.1 CDS Ppha_2587 NC_011060.1 2661245 2661502 R KEGG: cch:Cag_0601 hypothetical protein; hypothetical protein complement(2661245..2661502) Pelodictyon phaeoclathratiforme BU-1 6463683 YP_002019367.1 CDS Ppha_2588 NC_011060.1 2661499 2661639 R hypothetical protein complement(2661499..2661639) Pelodictyon phaeoclathratiforme BU-1 6461437 YP_002019368.1 CDS Ppha_2589 NC_011060.1 2661668 2663308 R PFAM: glycosyl transferase group 1; KEGG: pme:NATL1_21041 hypothetical protein; group 1 glycosyl transferase complement(2661668..2663308) Pelodictyon phaeoclathratiforme BU-1 6461399 YP_002019369.1 CDS Ppha_2590 NC_011060.1 2663371 2664453 R PFAM: acyltransferase 3; KEGG: sde:Sde_0174 acyltransferase-like; acyltransferase 3 complement(2663371..2664453) Pelodictyon phaeoclathratiforme BU-1 6461384 YP_002019370.1 CDS Ppha_2591 NC_011060.1 2664593 2665825 R PFAM: glycosyl transferase group 1; KEGG: cch:Cag_0447 hypothetical protein; group 1 glycosyl transferase complement(2664593..2665825) Pelodictyon phaeoclathratiforme BU-1 6461353 YP_002019371.1 CDS Ppha_2592 NC_011060.1 2665932 2666537 R PFAM: Methyltransferase type 11; KEGG: cch:Cag_1750 hypothetical protein; type 11 methyltransferase complement(2665932..2666537) Pelodictyon phaeoclathratiforme BU-1 6461415 YP_002019372.1 CDS Ppha_2593 NC_011060.1 2666929 2668650 D PFAM: transposase IS4 family protein; KEGG: mar:MAE_30320 transposase; transposase IS4 family protein 2666929..2668650 Pelodictyon phaeoclathratiforme BU-1 6461460 YP_002019373.1 CDS Ppha_2594 NC_011060.1 2668712 2672011 R PFAM: Hemolysin-type calcium-binding region; KEGG: ava:Ava_4160 VCBS; hemolysin-type calcium-binding protein complement(2668712..2672011) Pelodictyon phaeoclathratiforme BU-1 6461442 YP_002019374.1 CDS Ppha_2596 NC_011060.1 2672609 2678524 R PFAM: Hemolysin-type calcium-binding region; KEGG: ret:RHE_CH00724 rhizobiocin/RTX toxin and hemolysin-type calcium binding protein; hemolysin-type calcium-binding protein complement(2672609..2678524) Pelodictyon phaeoclathratiforme BU-1 6461435 YP_002019375.1 CDS Ppha_2597 NC_011060.1 2678957 2679886 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dvl:Dvul_2392 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2678957..2679886) Pelodictyon phaeoclathratiforme BU-1 6461433 YP_002019376.1 CDS Ppha_2598 NC_011060.1 2679877 2681133 R PFAM: glycosyl transferase group 1; KEGG: hau:Haur_1032 glycosyl transferase group 1; group 1 glycosyl transferase complement(2679877..2681133) Pelodictyon phaeoclathratiforme BU-1 6461489 YP_002019377.1 CDS Ppha_2599 NC_011060.1 2681423 2684293 D PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1481 glycosyltransferase-like; group 1 glycosyl transferase 2681423..2684293 Pelodictyon phaeoclathratiforme BU-1 6461429 YP_002019378.1 CDS Ppha_2600 NC_011060.1 2684290 2685225 D PFAM: glycosyl transferase family 2; KEGG: cch:Cag_1479 glycosyltransferase involved in cell wall biogenesis-like; family 2 glycosyl transferase 2684290..2685225 Pelodictyon phaeoclathratiforme BU-1 6461411 YP_002019379.1 CDS Ppha_2601 NC_011060.1 2685330 2686235 R PFAM: lipid A biosynthesis acyltransferase; KEGG: pvi:Cvib_0671 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(2685330..2686235) Pelodictyon phaeoclathratiforme BU-1 6461346 YP_002019380.1 CDS Ppha_2602 NC_011060.1 2686356 2686868 D TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: cph:Cpha266_0346 RfaE bifunctional protein; rfaE bifunctional protein 2686356..2686868 Pelodictyon phaeoclathratiforme BU-1 6462540 YP_002019381.1 CDS Ppha_2603 NC_011060.1 2686855 2691390 D KEGG: cph:Cpha266_0345 hypothetical protein; hypothetical protein 2686855..2691390 Pelodictyon phaeoclathratiforme BU-1 6461406 YP_002019382.1 CDS Ppha_2604 NC_011060.1 2691412 2692689 D KEGG: pvi:Cvib_1568 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2691412..2692689 Pelodictyon phaeoclathratiforme BU-1 6461516 YP_002019383.1 CDS Ppha_2605 NC_011060.1 2692704 2693315 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cph:Cpha266_0343 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 2692704..2693315 Pelodictyon phaeoclathratiforme BU-1 6461527 YP_002019384.1 CDS Ppha_2606 NC_011060.1 2693331 2694854 D KEGG: cch:Cag_1608 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase 2693331..2694854 Pelodictyon phaeoclathratiforme BU-1 6461523 YP_002019385.1 CDS Ppha_2607 NC_011060.1 2694864 2696648 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cch:Cag_1607 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase 2694864..2696648 Pelodictyon phaeoclathratiforme BU-1 6461522 YP_002019386.1 CDS Ppha_2608 NC_011060.1 2696645 2698762 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cph:Cpha266_0340 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2696645..2698762) Pelodictyon phaeoclathratiforme BU-1 6461514 YP_002019387.1 CDS Ppha_2609 NC_011060.1 2698788 2699450 R KEGG: cph:Cpha266_0339 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(2698788..2699450) Pelodictyon phaeoclathratiforme BU-1 6461558 YP_002019388.1 CDS Ppha_2610 NC_011060.1 2699542 2700120 D KEGG: cch:Cag_1211 hypothetical protein; hypothetical protein 2699542..2700120 Pelodictyon phaeoclathratiforme BU-1 6461483 YP_002019389.1 CDS Ppha_2611 NC_011060.1 2700168 2701121 R KEGG: cch:Cag_1212 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(2700168..2701121) Pelodictyon phaeoclathratiforme BU-1 6461581 YP_002019390.1 CDS Ppha_2612 NC_011060.1 2701208 2702299 D TIGRFAM: thiamine-monophosphate kinase; KEGG: cph:Cpha266_0336 thiamine-monophosphate kinase; thiamine-monophosphate kinase 2701208..2702299 Pelodictyon phaeoclathratiforme BU-1 6461472 YP_002019391.1 CDS Ppha_2613 NC_011060.1 2702570 2703679 D PFAM: SMC domain protein; KEGG: rca:Rcas_4237 hypothetical protein; SMC domain-containing protein 2702570..2703679 Pelodictyon phaeoclathratiforme BU-1 6461594 YP_002019392.1 CDS Ppha_2614 NC_011060.1 2703679 2704365 D KEGG: maq:Maqu_0563 hypothetical protein; hypothetical protein 2703679..2704365 Pelodictyon phaeoclathratiforme BU-1 6461579 YP_002019393.1 CDS Ppha_2615 NC_011060.1 2704395 2705768 D catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta 2704395..2705768 Pelodictyon phaeoclathratiforme BU-1 6461650 YP_002019394.1 CDS Ppha_2616 NC_011060.1 2705826 2706611 R TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: cch:Cag_0452 fic family protein; death-on-curing family protein complement(2705826..2706611) Pelodictyon phaeoclathratiforme BU-1 6461664 YP_002019395.1 CDS Ppha_2617 NC_011060.1 2706812 2709352 R PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0334 ATPase AAA-2 domain protein; ATPase AAA-2 domain-containing protein complement(2706812..2709352) Pelodictyon phaeoclathratiforme BU-1 6461536 YP_002019396.1 CDS Ppha_2618 NC_011060.1 2709530 2709994 D KEGG: cph:Cpha266_0333 hypothetical protein; hypothetical protein 2709530..2709994 Pelodictyon phaeoclathratiforme BU-1 6461672 YP_002019397.1 CDS Ppha_2619 NC_011060.1 2710209 2711210 R KEGG: cph:Cpha266_0316 hypothetical protein; hypothetical protein complement(2710209..2711210) Pelodictyon phaeoclathratiforme BU-1 6461670 YP_002019398.1 CDS Ppha_2620 NC_011060.1 2711388 2711882 R PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0314 ferric uptake regulator, Fur family; Fur family ferric uptake regulator complement(2711388..2711882) Pelodictyon phaeoclathratiforme BU-1 6461668 YP_002019399.1 CDS Ppha_2621 NC_011060.1 2712064 2712801 R TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: radical SAM protein; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein complement(2712064..2712801) Pelodictyon phaeoclathratiforme BU-1 6461660 YP_002019400.1 CDS Ppha_2622 NC_011060.1 2712801 2714960 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(2712801..2714960) Pelodictyon phaeoclathratiforme BU-1 6461721 YP_002019401.1 CDS Ppha_2623 NC_011060.1 2715002 2715139 R hypothetical protein complement(2715002..2715139) Pelodictyon phaeoclathratiforme BU-1 6461689 YP_002019402.1 CDS Ppha_2625 NC_011060.1 2715766 2716590 R PFAM: NAD-dependent epimerase/dehydratase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: cph:Cpha266_0311 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2715766..2716590) Pelodictyon phaeoclathratiforme BU-1 6461701 YP_002019403.1 CDS Ppha_2626 NC_011060.1 2716689 2716916 R KEGG: cte:CT0186 hypothetical protein; hypothetical protein complement(2716689..2716916) Pelodictyon phaeoclathratiforme BU-1 6461693 YP_002019404.1 CDS Ppha_2627 NC_011060.1 2716938 2718389 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cph:Cpha266_2590 glycerol kinase; glycerol kinase complement(2716938..2718389) Pelodictyon phaeoclathratiforme BU-1 6461676 YP_002019405.1 CDS Ppha_2628 NC_011060.1 2718676 2719395 R KEGG: mul:MUL_3181 hypothetical protein; hypothetical protein complement(2718676..2719395) Pelodictyon phaeoclathratiforme BU-1 6461737 YP_002019406.1 CDS Ppha_2629 NC_011060.1 2719844 2720923 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: pen:PSEEN4650 hypothetical protein; helix-turn-helix domain-containing protein 2719844..2720923 Pelodictyon phaeoclathratiforme BU-1 6461675 YP_002019407.1 CDS Ppha_2630 NC_011060.1 2720907 2721389 D KEGG: sfr:Sfri_1952 hypothetical protein; hypothetical protein 2720907..2721389 Pelodictyon phaeoclathratiforme BU-1 6461743 YP_002019408.1 CDS Ppha_2631 NC_011060.1 2721502 2722296 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_1074 ABC transporter related; ABC transporter-like protein 2721502..2722296 Pelodictyon phaeoclathratiforme BU-1 6461739 YP_002019409.1 CDS Ppha_2632 NC_011060.1 2722293 2723078 D PFAM: conserved hypothetical protein; KEGG: ppd:Ppro_1073 conserved hypothetical protein 245; hypothetical protein 2722293..2723078 Pelodictyon phaeoclathratiforme BU-1 6461741 YP_002019410.1 CDS Ppha_2633 NC_011060.1 2723576 2723794 D KEGG: cch:Cag_1994 hypothetical protein; hypothetical protein 2723576..2723794 Pelodictyon phaeoclathratiforme BU-1 6461803 YP_002019411.1 CDS Ppha_2634 NC_011060.1 2723791 2724090 D KEGG: cch:Cag_1995 hypothetical protein; hypothetical protein 2723791..2724090 Pelodictyon phaeoclathratiforme BU-1 6461704 YP_002019412.1 CDS Ppha_2635 NC_011060.1 2724204 2724428 R TIGRFAM: addiction module component, TIGR02574 family; PFAM: addiction module component CHP02574 family protein; KEGG: cph:Cpha266_0253 addiction module component, TIGR02574 family; addiction module protein complement(2724204..2724428) Pelodictyon phaeoclathratiforme BU-1 6461773 YP_002019413.1 CDS Ppha_2636 NC_011060.1 2724793 2725299 R KEGG: pna:Pnap_1139 hypothetical protein; hypothetical protein complement(2724793..2725299) Pelodictyon phaeoclathratiforme BU-1 6461778 YP_002019414.1 CDS Ppha_2637 NC_011060.1 2725302 2726363 R KEGG: pna:Pnap_1140 ATP-binding protein; ATP-binding protein complement(2725302..2726363) Pelodictyon phaeoclathratiforme BU-1 6461758 YP_002019415.1 CDS Ppha_2638 NC_011060.1 2726461 2727198 R KEGG: cch:Cag_1574 hypothetical protein; hypothetical protein complement(2726461..2727198) Pelodictyon phaeoclathratiforme BU-1 6461402 YP_002019416.1 CDS Ppha_2639 NC_011060.1 2727203 2728456 R KEGG: cph:Cpha266_0306 hypothetical protein; hypothetical protein complement(2727203..2728456) Pelodictyon phaeoclathratiforme BU-1 6461811 YP_002019417.1 CDS Ppha_2640 NC_011060.1 2728542 2730029 R PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_0305 amine oxidase; amine oxidase complement(2728542..2730029) Pelodictyon phaeoclathratiforme BU-1 6462191 YP_002019418.1 CDS Ppha_2641 NC_011060.1 2730605 2731285 R PFAM: hypothetical protein; KEGG: cph:Cpha266_0303 DedA protein; hypothetical protein complement(2730605..2731285) Pelodictyon phaeoclathratiforme BU-1 6461819 YP_002019419.1 CDS Ppha_2642 NC_011060.1 2731456 2732346 D PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_0302 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2731456..2732346 Pelodictyon phaeoclathratiforme BU-1 6461808 YP_002019420.1 CDS Ppha_2643 NC_011060.1 2732438 2734705 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cch:Cag_0590 penicillin-binding protein 1A; penicillin-binding protein 2732438..2734705 Pelodictyon phaeoclathratiforme BU-1 6461866 YP_002019421.1 CDS guaA NC_011060.1 2734740 2736281 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2734740..2736281 Pelodictyon phaeoclathratiforme BU-1 6461906 YP_002019422.1 CDS Ppha_2645 NC_011060.1 2736336 2736779 D PFAM: Rhodanese domain protein; KEGG: gsu:GSU0505 rhodanese-like domain protein; rhodanese domain-containing protein 2736336..2736779 Pelodictyon phaeoclathratiforme BU-1 6461783 YP_002019423.1 CDS Ppha_2646 NC_011060.1 2737208 2738688 D hypothetical protein join(2737208..2737678,2737678..2738688) Pelodictyon phaeoclathratiforme BU-1 6461917 YP_002019424.1 CDS Ppha_2647 NC_011060.1 2738985 2739404 R KEGG: mba:Mbar_A1347 hypothetical protein; hypothetical protein complement(2738985..2739404) Pelodictyon phaeoclathratiforme BU-1 6461835 YP_002019425.1 CDS Ppha_2648 NC_011060.1 2739502 2739687 R PFAM: helix-turn-helix domain protein; KEGG: amt:Amet_3370 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2739502..2739687) Pelodictyon phaeoclathratiforme BU-1 6461852 YP_002019426.1 CDS Ppha_2649 NC_011060.1 2739828 2740058 D KEGG: cch:Cag_1568 hypothetical protein; hypothetical protein 2739828..2740058 Pelodictyon phaeoclathratiforme BU-1 6461875 YP_002019427.1 CDS Ppha_2650 NC_011060.1 2740055 2740477 D KEGG: syn:sll1715 hypothetical protein; hypothetical protein 2740055..2740477 Pelodictyon phaeoclathratiforme BU-1 6462226 YP_002019428.1 CDS Ppha_2652 NC_011060.1 2741367 2741843 D KEGG: cph:Cpha266_1944 Legionella vir region protein; vir region protein-like protein 2741367..2741843 Pelodictyon phaeoclathratiforme BU-1 6461825 YP_002019429.1 CDS Ppha_2653 NC_011060.1 2741922 2742899 D KEGG: cph:Cpha266_0294 hypothetical protein; hypothetical protein 2741922..2742899 Pelodictyon phaeoclathratiforme BU-1 6461926 YP_002019430.1 CDS Ppha_2654 NC_011060.1 2743067 2743324 R KEGG: dac:Daci_4115 hypothetical protein; hypothetical protein complement(2743067..2743324) Pelodictyon phaeoclathratiforme BU-1 6461922 YP_002019431.1 CDS Ppha_2655 NC_011060.1 2744036 2744263 R hypothetical protein complement(2744036..2744263) Pelodictyon phaeoclathratiforme BU-1 6461918 YP_002019432.1 CDS Ppha_2656 NC_011060.1 2744326 2744775 R KEGG: rpb:RPB_0073 hypothetical protein; hypothetical protein complement(2744326..2744775) Pelodictyon phaeoclathratiforme BU-1 6461865 YP_002019433.1 CDS Ppha_2657 NC_011060.1 2744768 2745235 R KEGG: rpb:RPB_0074 hypothetical protein; hypothetical protein complement(2744768..2745235) Pelodictyon phaeoclathratiforme BU-1 6461964 YP_002019434.1 CDS Ppha_2658 NC_011060.1 2745519 2745764 R KEGG: cph:Cpha266_0265 hypothetical protein; hypothetical protein complement(2745519..2745764) Pelodictyon phaeoclathratiforme BU-1 6461853 YP_002019435.1 CDS Ppha_2659 NC_011060.1 2745761 2746018 R KEGG: cph:Cpha266_0264 hypothetical protein; hypothetical protein complement(2745761..2746018) Pelodictyon phaeoclathratiforme BU-1 6461963 YP_002019436.1 CDS Ppha_2660 NC_011060.1 2746155 2746589 R PFAM: phosphatase regulatory subunit; KEGG: cac:CA_P0129 glycogen-binding regulatory subunit of S/T protein phosphatase I; phosphatase regulatory subunit complement(2746155..2746589) Pelodictyon phaeoclathratiforme BU-1 6461939 YP_002019437.1 CDS Ppha_2661 NC_011060.1 2746925 2747617 R hypothetical protein complement(2746925..2747617) Pelodictyon phaeoclathratiforme BU-1 6461935 YP_002019438.1 CDS Ppha_2662 NC_011060.1 2747834 2748310 R KEGG: slo:Shew_2745 hypothetical protein; hypothetical protein complement(2747834..2748310) Pelodictyon phaeoclathratiforme BU-1 6462028 YP_002019439.1 CDS Ppha_2663 NC_011060.1 2748437 2748700 R KEGG: cph:Cpha266_0270 hypothetical protein; hypothetical protein complement(2748437..2748700) Pelodictyon phaeoclathratiforme BU-1 6461988 YP_002019440.1 CDS Ppha_2664 NC_011060.1 2748767 2749984 D KEGG: cph:Cpha266_0250 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB 2748767..2749984 Pelodictyon phaeoclathratiforme BU-1 6461936 YP_002019441.1 CDS Ppha_2665 NC_011060.1 2750083 2750385 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0246 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(2750083..2750385) Pelodictyon phaeoclathratiforme BU-1 6462334 YP_002019442.1 CDS Ppha_2666 NC_011060.1 2750437 2750931 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0245 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(2750437..2750931) Pelodictyon phaeoclathratiforme BU-1 6461995 YP_002019443.1 CDS Ppha_2667 NC_011060.1 2751044 2752402 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_0244 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2751044..2752402) Pelodictyon phaeoclathratiforme BU-1 6461980 YP_002019444.1 CDS alaS NC_011060.1 2752427 2755093 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2752427..2755093) Pelodictyon phaeoclathratiforme BU-1 6461972 YP_002019445.1 CDS Ppha_2669 NC_011060.1 2755362 2755619 D KEGG: pvi:Cvib_1596 hypothetical protein; hypothetical protein 2755362..2755619 Pelodictyon phaeoclathratiforme BU-1 6462097 YP_002019446.1 CDS Ppha_2670 NC_011060.1 2755827 2757713 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0241 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2755827..2757713 Pelodictyon phaeoclathratiforme BU-1 6462090 YP_002019447.1 CDS Ppha_2671 NC_011060.1 2757710 2758741 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2757710..2758741 Pelodictyon phaeoclathratiforme BU-1 6462086 YP_002019448.1 CDS Ppha_2672 NC_011060.1 2758798 2759805 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(2758798..2759805) Pelodictyon phaeoclathratiforme BU-1 6462075 YP_002019449.1 CDS Ppha_2673 NC_011060.1 2759895 2760170 R PFAM: histone family protein DNA-binding protein; KEGG: plt:Plut_1957 histone-like DNA-binding protein; histone family protein DNA-binding protein complement(2759895..2760170) Pelodictyon phaeoclathratiforme BU-1 6462004 YP_002019450.1 CDS Ppha_2674 NC_011060.1 2760259 2760408 D hypothetical protein 2760259..2760408 Pelodictyon phaeoclathratiforme BU-1 6462015 YP_002019451.1 CDS Ppha_2675 NC_011060.1 2760392 2760958 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2760392..2760958 Pelodictyon phaeoclathratiforme BU-1 6462189 YP_002019452.1 CDS Ppha_2676 NC_011060.1 2761011 2761466 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cch:Cag_0360 acetyl-CoA biotin carboxyl carrier; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2761011..2761466 Pelodictyon phaeoclathratiforme BU-1 6462185 YP_002019453.1 CDS Ppha_2677 NC_011060.1 2761487 2762830 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pvi:Cvib_1603 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 2761487..2762830 Pelodictyon phaeoclathratiforme BU-1 6462165 YP_002019454.1 CDS Ppha_2678 NC_011060.1 2762894 2767387 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(2762894..2767387) Pelodictyon phaeoclathratiforme BU-1 6462238 YP_002019455.1 CDS rpoB NC_011060.1 2767457 2771368 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(2767457..2771368) Pelodictyon phaeoclathratiforme BU-1 6462119 YP_002019456.1 CDS rplL NC_011060.1 2771581 2771955 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(2771581..2771955) Pelodictyon phaeoclathratiforme BU-1 6462112 YP_002019457.1 CDS rplJ NC_011060.1 2772023 2772541 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(2772023..2772541) Pelodictyon phaeoclathratiforme BU-1 6461077 YP_002019458.1 CDS rplA NC_011060.1 2772559 2773248 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(2772559..2773248) Pelodictyon phaeoclathratiforme BU-1 6462258 YP_002019459.1 CDS rplK NC_011060.1 2773325 2773750 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(2773325..2773750) Pelodictyon phaeoclathratiforme BU-1 6462254 YP_002019460.1 CDS Ppha_2684 NC_011060.1 2773792 2774367 R TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cph:Cpha266_0228 transcription antitermination protein NusG; NusG antitermination factor complement(2773792..2774367) Pelodictyon phaeoclathratiforme BU-1 6462251 YP_002019461.1 CDS secE NC_011060.1 2774391 2774582 R forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(2774391..2774582) Pelodictyon phaeoclathratiforme BU-1 6462244 YP_002019462.1 CDS Ppha_2686 NC_011060.1 2775057 2775833 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_0226 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2775057..2775833) Pelodictyon phaeoclathratiforme BU-1 6462442 YP_002019463.1 CDS Ppha_2687 NC_011060.1 2775818 2777884 R KEGG: cch:Cag_0349 IspG protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase complement(2775818..2777884) Pelodictyon phaeoclathratiforme BU-1 6462462 YP_002019464.1 CDS Ppha_2688 NC_011060.1 2777913 2778251 R PFAM: Septum formation initiator; KEGG: plt:Plut_1971 hypothetical protein; septum formation initiator complement(2777913..2778251) Pelodictyon phaeoclathratiforme BU-1 6462435 YP_002019465.1 CDS eno NC_011060.1 2778324 2779637 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2778324..2779637) Pelodictyon phaeoclathratiforme BU-1 6462513 YP_002019466.1 CDS Ppha_2690 NC_011060.1 2779863 2781938 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2779863..2781938 Pelodictyon phaeoclathratiforme BU-1 6462507 YP_002019467.1 CDS Ppha_2691 NC_011060.1 2782032 2782820 R PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0221 dolichyl-phosphate beta-D-mannosyltransferase; dolichyl-phosphate beta-D-mannosyltransferase complement(2782032..2782820) Pelodictyon phaeoclathratiforme BU-1 6462501 YP_002019468.1 CDS Ppha_2692 NC_011060.1 2782903 2783592 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0344 photosystem P840 reaction center iron-sulfur protein; 4Fe-4S ferredoxin complement(2782903..2783592) Pelodictyon phaeoclathratiforme BU-1 6461656 YP_002019469.1 CDS Ppha_2693 NC_011060.1 2783686 2785881 R KEGG: cch:Cag_0343 photosystem P840 reaction center, large subunit; photosystem P840 reaction center, large subunit complement(2783686..2785881) Pelodictyon phaeoclathratiforme BU-1 6462150 YP_002019470.1 CDS dapF NC_011060.1 2786297 2787103 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2786297..2787103 Pelodictyon phaeoclathratiforme BU-1 6462478 YP_002019471.1 CDS Ppha_2696 NC_011060.1 2787658 2788374 D KEGG: mem:Memar_0122 hypothetical protein; hypothetical protein 2787658..2788374 Pelodictyon phaeoclathratiforme BU-1 6462560 YP_002019472.1 CDS Ppha_2697 NC_011060.1 2788398 2789375 D KEGG: mba:Mbar_A2064 hypothetical protein; hypothetical protein 2788398..2789375 Pelodictyon phaeoclathratiforme BU-1 6462542 YP_002019473.1 CDS Ppha_2698 NC_011060.1 2789503 2789805 R KEGG: cch:Cag_0608 hypothetical protein; hypothetical protein complement(2789503..2789805) Pelodictyon phaeoclathratiforme BU-1 6462535 YP_002019474.1 CDS Ppha_2699 NC_011060.1 2789960 2790118 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pvi:Cvib_1621 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2789960..2790118 Pelodictyon phaeoclathratiforme BU-1 6462072 YP_002019475.1 CDS Ppha_2700 NC_011060.1 2790167 2791072 R TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: cch:Cag_0146 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase complement(2790167..2791072) Pelodictyon phaeoclathratiforme BU-1 6462566 YP_002019476.1 CDS Ppha_2701 NC_011060.1 2791270 2793150 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cch:Cag_0145 DNA mismatch repair protein; DNA mismatch repair protein MutL complement(2791270..2793150) Pelodictyon phaeoclathratiforme BU-1 6462617 YP_002019477.1 CDS Ppha_2702 NC_011060.1 2793295 2794551 R TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cph:Cpha266_2541 competence/damage-inducible protein CinA; competence/damage-inducible protein CinA complement(2793295..2794551) Pelodictyon phaeoclathratiforme BU-1 6462703 YP_002019478.1 CDS thrA NC_011060.1 2794564 2797035 R multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I complement(2794564..2797035) Pelodictyon phaeoclathratiforme BU-1 6462562 YP_002019479.1 CDS Ppha_2704 NC_011060.1 2797201 2798076 R produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2797201..2798076) Pelodictyon phaeoclathratiforme BU-1 6462590 YP_002019480.1 CDS Ppha_2705 NC_011060.1 2798125 2799705 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2798125..2799705) Pelodictyon phaeoclathratiforme BU-1 6462597 YP_002019481.1 CDS Ppha_2706 NC_011060.1 2799927 2800889 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2799927..2800889 Pelodictyon phaeoclathratiforme BU-1 6462151 YP_002019482.1 CDS Ppha_2707 NC_011060.1 2800917 2802233 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2800917..2802233 Pelodictyon phaeoclathratiforme BU-1 6462620 YP_002019483.1 CDS Ppha_2708 NC_011060.1 2802252 2802962 D KEGG: cph:Cpha266_2547 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2802252..2802962 Pelodictyon phaeoclathratiforme BU-1 6462619 YP_002019484.1 CDS ribH NC_011060.1 2802959 2803426 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(2802959..2803426) Pelodictyon phaeoclathratiforme BU-1 6462618 YP_002019485.1 CDS Ppha_2710 NC_011060.1 2803451 2804086 R TIGRFAM: phosphoheptose isomerase; KEGG: cph:Cpha266_2549 phosphoheptose isomerase; phosphoheptose isomerase complement(2803451..2804086) Pelodictyon phaeoclathratiforme BU-1 6462616 YP_002019486.1 CDS Ppha_2711 NC_011060.1 2804209 2804637 R KEGG: cch:Cag_1797 hypothetical protein; hypothetical protein complement(2804209..2804637) Pelodictyon phaeoclathratiforme BU-1 6462629 YP_002019487.1 CDS Ppha_2712 NC_011060.1 2804643 2805047 R PFAM: helix-turn-helix domain protein; KEGG: cch:Cag_1798 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(2804643..2805047) Pelodictyon phaeoclathratiforme BU-1 6462602 YP_002019488.1 CDS Ppha_2713 NC_011060.1 2805062 2805541 R KEGG: cch:Cag_1799 hypothetical protein; hypothetical protein complement(2805062..2805541) Pelodictyon phaeoclathratiforme BU-1 6462155 YP_002019489.1 CDS hemE NC_011060.1 2805783 2806838 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(2805783..2806838) Pelodictyon phaeoclathratiforme BU-1 6462633 YP_002019490.1 CDS Ppha_2715 NC_011060.1 2806982 2807830 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: cch:Cag_0129 succinate/fumarate oxidoreductase; CoB--CoM heterodisulfide reductase complement(2806982..2807830) Pelodictyon phaeoclathratiforme BU-1 6462631 YP_002019491.1 CDS Ppha_2716 NC_011060.1 2807848 2808882 R KEGG: cch:Cag_0128 succinate dehydrogenase/fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(2807848..2808882) Pelodictyon phaeoclathratiforme BU-1 6462627 YP_002019492.1 CDS Ppha_2717 NC_011060.1 2808894 2810597 R KEGG: cch:Cag_0127 succinate dehydrogenase or fumarate reductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase or fumarate reductase, flavoprotein subunit complement(2808894..2810597) Pelodictyon phaeoclathratiforme BU-1 6462624 YP_002019493.1 CDS Ppha_2718 NC_011060.1 2810735 2811187 R PFAM: CBS domain containing protein; KEGG: cch:Cag_0126 CBS; signal-transduction protein with CBS domains complement(2810735..2811187) Pelodictyon phaeoclathratiforme BU-1 6462636 YP_002019494.1 CDS Ppha_2719 NC_011060.1 2811202 2811351 R hypothetical protein complement(2811202..2811351) Pelodictyon phaeoclathratiforme BU-1 6462623 YP_002019495.1 CDS Ppha_2720 NC_011060.1 2811384 2812025 R PFAM: beta-lactamase domain protein; KEGG: cph:Cpha266_0179 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(2811384..2812025) Pelodictyon phaeoclathratiforme BU-1 6462640 YP_002019496.1 CDS Ppha_2721 NC_011060.1 2812040 2812348 R KEGG: cph:Cpha266_0180 hypothetical protein; hypothetical protein complement(2812040..2812348) Pelodictyon phaeoclathratiforme BU-1 6462638 YP_002019497.1 CDS Ppha_2722 NC_011060.1 2812362 2815574 R PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0181 acriflavin resistance protein; acriflavin resistance protein complement(2812362..2815574) Pelodictyon phaeoclathratiforme BU-1 6462647 YP_002019498.1 CDS Ppha_2723 NC_011060.1 2815567 2815977 R KEGG: plt:Plut_2000 hypothetical protein; hypothetical protein complement(2815567..2815977) Pelodictyon phaeoclathratiforme BU-1 6462637 YP_002019499.1 CDS Ppha_2724 NC_011060.1 2816009 2817331 R PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0183 outer membrane efflux protein; outer membrane efflux protein complement(2816009..2817331) Pelodictyon phaeoclathratiforme BU-1 6462634 YP_002019500.1 CDS Ppha_2725 NC_011060.1 2817338 2817568 R PFAM: protein of unknown function DUF156; KEGG: pvi:Cvib_1645 hypothetical protein; hypothetical protein complement(2817338..2817568) Pelodictyon phaeoclathratiforme BU-1 6462651 YP_002019501.1 CDS Ppha_2726 NC_011060.1 2817704 2818327 R KEGG: cch:Cag_0120 hypothetical protein; hypothetical protein complement(2817704..2818327) Pelodictyon phaeoclathratiforme BU-1 6462652 YP_002019502.1 CDS Ppha_2727 NC_011060.1 2818417 2818653 R KEGG: cph:Cpha266_0190 hypothetical protein; hypothetical protein complement(2818417..2818653) Pelodictyon phaeoclathratiforme BU-1 6462645 YP_002019503.1 CDS Ppha_2728 NC_011060.1 2818733 2819092 R KEGG: cph:Cpha266_0191 hypothetical protein; hypothetical protein complement(2818733..2819092) Pelodictyon phaeoclathratiforme BU-1 6462236 YP_002019504.1 CDS Ppha_2729 NC_011060.1 2819377 2819670 D PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2819377..2819670 Pelodictyon phaeoclathratiforme BU-1 6462483 YP_002019505.1 CDS Ppha_2730 NC_011060.1 2819667 2820593 D PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1954 integrase, catalytic region; integrase catalytic subunit 2819667..2820593 Pelodictyon phaeoclathratiforme BU-1 6461201 YP_002019506.1 CDS Ppha_2731 NC_011060.1 2820964 2822361 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_0200 radical SAM protein; radical SAM protein 2820964..2822361 Pelodictyon phaeoclathratiforme BU-1 6462642 YP_002019507.1 CDS Ppha_2736 NC_011060.1 2825336 2825713 R KEGG: cph:Cpha266_0185 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2825336..2825713) Pelodictyon phaeoclathratiforme BU-1 6462657 YP_002019508.1 CDS Ppha_2737 NC_011060.1 2825710 2826366 R PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: cph:Cpha266_0186 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase complement(2825710..2826366) Pelodictyon phaeoclathratiforme BU-1 6462672 YP_002019509.1 CDS Ppha_2738 NC_011060.1 2826690 2827313 D KEGG: cph:Cpha266_0187 hypothetical protein; hypothetical protein 2826690..2827313 Pelodictyon phaeoclathratiforme BU-1 6462715 YP_002019510.1 CDS Ppha_2739 NC_011060.1 2827565 2828740 D PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: cph:Cpha266_0188 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; coenzyme F420 hydrogenase/dehydrogenase beta subunit domain-containing protein 2827565..2828740 Pelodictyon phaeoclathratiforme BU-1 6462586 YP_002019511.1 CDS Ppha_2740 NC_011060.1 2828761 2829534 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_0189 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2828761..2829534 Pelodictyon phaeoclathratiforme BU-1 6463598 YP_002019512.1 CDS Ppha_2741 NC_011060.1 2829708 2829932 R KEGG: cph:Cpha266_0190 hypothetical protein; hypothetical protein complement(2829708..2829932) Pelodictyon phaeoclathratiforme BU-1 6462666 YP_002019513.1 CDS Ppha_2742 NC_011060.1 2829971 2830336 R KEGG: cph:Cpha266_0191 hypothetical protein; hypothetical protein complement(2829971..2830336) Pelodictyon phaeoclathratiforme BU-1 6462660 YP_002019514.1 CDS Ppha_2743 NC_011060.1 2830367 2831908 R KEGG: cph:Cpha266_0192 hypothetical protein; hypothetical protein complement(2830367..2831908) Pelodictyon phaeoclathratiforme BU-1 6462662 YP_002019515.1 CDS Ppha_2744 NC_011060.1 2832098 2832319 D KEGG: cph:Cpha266_0193 hypothetical protein; hypothetical protein 2832098..2832319 Pelodictyon phaeoclathratiforme BU-1 6462648 YP_002019516.1 CDS Ppha_2745 NC_011060.1 2832347 2833228 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cph:Cpha266_0194 aldolase; aldolase complement(2832347..2833228) Pelodictyon phaeoclathratiforme BU-1 6462635 YP_002019517.1 CDS Ppha_2746 NC_011060.1 2833293 2835410 R PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_0195 short chain dehydrogenase; short chain dehydrogenase complement(2833293..2835410) Pelodictyon phaeoclathratiforme BU-1 6462632 YP_002019518.1 CDS Ppha_2747 NC_011060.1 2835539 2836744 R KEGG: cph:Cpha266_0196 hypothetical protein; hypothetical protein complement(2835539..2836744) Pelodictyon phaeoclathratiforme BU-1 6462626 YP_002019519.1 CDS Ppha_2748 NC_011060.1 2836996 2837229 R KEGG: pvi:Cvib_0371 hypothetical protein; hypothetical protein complement(2836996..2837229) Pelodictyon phaeoclathratiforme BU-1 6462541 YP_002019520.1 CDS Ppha_2749 NC_011060.1 2837346 2837816 R TIGRFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cph:Cpha266_0198 2-vinyl bacteriochlorophyllide hydratase; 2-oxoglutarate synthase subunit, 2-oxoacid-ferredoxin oxidoreductase subunit CD complement(2837346..2837816) Pelodictyon phaeoclathratiforme BU-1 6462094 YP_002019521.1 CDS Ppha_2752 NC_011060.1 2839117 2840136 D TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cch:Cag_0115 CrtF-related protein; C-20 methyltransferase BchU 2839117..2840136 Pelodictyon phaeoclathratiforme BU-1 6462467 YP_002019522.1 CDS Ppha_2753 NC_011060.1 2840288 2840503 D KEGG: cph:Cpha266_0202 chlorosome envelope protein B; chlorosome envelope protein B 2840288..2840503 Pelodictyon phaeoclathratiforme BU-1 6462458 YP_002019523.1 CDS Ppha_2754 NC_011060.1 2840736 2841362 R PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: cch:Cag_0119 hypothetical protein; proto-chlorophyllide reductase 57 kD subunit complement(2840736..2841362) Pelodictyon phaeoclathratiforme BU-1 6462404 YP_002019524.1 CDS Ppha_2755 NC_011060.1 2841783 2841995 R KEGG: plt:Plut_0810 hypothetical protein; hypothetical protein complement(2841783..2841995) Pelodictyon phaeoclathratiforme BU-1 6462376 YP_002019525.1 CDS Ppha_2756 NC_011060.1 2842487 2843710 D KEGG: cph:Cpha266_2301 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA 2842487..2843710 Pelodictyon phaeoclathratiforme BU-1 6462141 YP_002019526.1 CDS Ppha_2757 NC_011060.1 2843768 2845156 D PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cch:Cag_0116 elongator protein 3/MiaB/NifB; radical SAM protein 2843768..2845156 Pelodictyon phaeoclathratiforme BU-1 6462109 YP_002019527.1 CDS Ppha_2758 NC_011060.1 2845360 2846379 D TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cch:Cag_0115 CrtF-related protein; C-20 methyltransferase BchU 2845360..2846379 Pelodictyon phaeoclathratiforme BU-1 6461913 YP_002019528.1 CDS Ppha_2759 NC_011060.1 2846630 2846857 D KEGG: plt:Plut_2005 chlorosome envelope protein B; chlorosome envelope protein B 2846630..2846857 Pelodictyon phaeoclathratiforme BU-1 6461726 YP_002019529.1 CDS Ppha_2760 NC_011060.1 2846943 2847947 D PFAM: aminoglycoside phosphotransferase; KEGG: cph:Cpha266_0203 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2846943..2847947 Pelodictyon phaeoclathratiforme BU-1 6461552 YP_002019530.1 CDS Ppha_2761 NC_011060.1 2847944 2848906 D PFAM: Nucleotidyl transferase; KEGG: cch:Cag_0193 mannose-1-phosphate guanylyltransferase; nucleotidyl transferase 2847944..2848906 Pelodictyon phaeoclathratiforme BU-1 6461428 YP_002019531.1 CDS Ppha_2762 NC_011060.1 2848900 2850066 D PFAM: conserved hypothetical protein; KEGG: cch:Cag_0194 hypothetical protein; hypothetical protein 2848900..2850066 Pelodictyon phaeoclathratiforme BU-1 6461414 YP_002019532.1 CDS Ppha_2763 NC_011060.1 2850136 2851554 D PFAM: Na+/solute symporter; KEGG: cph:Cpha266_0206 Na+/solute symporter; Na+/solute symporter 2850136..2851554 Pelodictyon phaeoclathratiforme BU-1 6461287 YP_002019533.1 CDS Ppha_2764 NC_011060.1 2851840 2855667 D KEGG: plt:Plut_2011 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 2851840..2855667 Pelodictyon phaeoclathratiforme BU-1 6461079 YP_002019534.1 CDS Ppha_2765 NC_011060.1 2855679 2856038 D PFAM: response regulator receiver; KEGG: cph:Cpha266_1786 response regulator receiver protein; response regulator receiver protein 2855679..2856038 Pelodictyon phaeoclathratiforme BU-1 6461066 YP_002019535.1 CDS Ppha_2766 NC_011060.1 2856076 2856777 R PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: cch:Cag_1729 hypothetical protein; NmrA family protein complement(2856076..2856777) Pelodictyon phaeoclathratiforme BU-1 6461035 YP_002019536.1 CDS Ppha_2767 NC_011060.1 2856937 2858163 D PFAM: pentapeptide repeat protein; KEGG: plt:Plut_2015 pentapeptide repeat family protein; pentapeptide repeat-containing protein 2856937..2858163 Pelodictyon phaeoclathratiforme BU-1 6460913 YP_002019537.1 CDS Ppha_2768 NC_011060.1 2858228 2858506 R KEGG: cph:Cpha266_0211 hypothetical protein; hypothetical protein complement(2858228..2858506) Pelodictyon phaeoclathratiforme BU-1 6460908 YP_002019538.1 CDS Ppha_2769 NC_011060.1 2858666 2859316 R KEGG: plt:Plut_2017 hypothetical protein; hypothetical protein complement(2858666..2859316) Pelodictyon phaeoclathratiforme BU-1 6461528 YP_002019539.1 CDS Ppha_2770 NC_011060.1 2859483 2860250 R PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_1776 integral membrane protein TerC; integral membrane protein TerC complement(2859483..2860250) Pelodictyon phaeoclathratiforme BU-1 6462336 YP_002019540.1 CDS Ppha_2771 NC_011060.1 2860316 2862229 R PFAM: K potassium transporter; KEGG: cph:Cpha266_1777 K+ potassium transporter; K potassium transporter complement(2860316..2862229) Pelodictyon phaeoclathratiforme BU-1 6461992 YP_002019541.1 CDS Ppha_2772 NC_011060.1 2862718 2863233 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cph:Cpha266_0215 rare lipoprotein A; rare lipoprotein A 2862718..2863233 Pelodictyon phaeoclathratiforme BU-1 6461211 YP_002019542.1 CDS Ppha_2773 NC_011060.1 2863457 2865355 R PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: cte:CT1075 thiol:disulfide interchange protein DsbD; Protein-disulfide reductase complement(2863457..2865355) Pelodictyon phaeoclathratiforme BU-1 6462691 YP_002019543.1 CDS Ppha_2775 NC_011060.1 2866936 2868174 D KEGG: cph:Cpha266_1807 hypothetical protein; hypothetical protein 2866936..2868174 Pelodictyon phaeoclathratiforme BU-1 6463830 YP_002019544.1 CDS Ppha_2776 NC_011060.1 2868171 2868968 D PFAM: cytochrome c assembly protein; KEGG: cch:Cag_1681 cytochrome c biogenesis protein; cytochrome c assembly protein 2868171..2868968 Pelodictyon phaeoclathratiforme BU-1 6462392 YP_002019545.1 CDS Ppha_2777 NC_011060.1 2869090 2869494 R PFAM: PilT protein domain protein; KEGG: cch:Cag_1325 nucleic acid-binding protein,contains PIN domain; PilT protein domain-containing protein complement(2869090..2869494) Pelodictyon phaeoclathratiforme BU-1 6462581 YP_002019546.1 CDS Ppha_2778 NC_011060.1 2869494 2869727 R PFAM: SpoVT/AbrB domain protein; KEGG: cch:Cag_1324 hypothetical protein; SpoVT/AbrB domain-containing protein complement(2869494..2869727) Pelodictyon phaeoclathratiforme BU-1 6461517 YP_002019547.1 CDS trmE NC_011060.1 2869802 2871223 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(2869802..2871223) Pelodictyon phaeoclathratiforme BU-1 6462323 YP_002019548.1 CDS mazG NC_011060.1 2871360 2872169 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 2871360..2872169 Pelodictyon phaeoclathratiforme BU-1 6462521 YP_002019549.1 CDS Ppha_2781 NC_011060.1 2872173 2872838 R KEGG: cph:Cpha266_2535 phospholipase/carboxylesterase; phospholipase/carboxylesterase complement(2872173..2872838) Pelodictyon phaeoclathratiforme BU-1 6461848 YP_002019550.1 CDS Ppha_2782 NC_011060.1 2872902 2876198 R KEGG: pvi:Cvib_1672 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase complement(2872902..2876198) Pelodictyon phaeoclathratiforme BU-1 6462058 YP_002019551.1 CDS Ppha_2783 NC_011060.1 2876249 2878261 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cch:Cag_1984 alpha amylase, catalytic subdomain; alpha amylase catalytic protein complement(2876249..2878261) Pelodictyon phaeoclathratiforme BU-1 6461903 YP_002019552.1 CDS Ppha_2784 NC_011060.1 2878474 2879565 D TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: plt:Plut_2031 peptide chain release factor 2; peptide chain release factor 2 2878474..2879565 Pelodictyon phaeoclathratiforme BU-1 6461885 YP_002019553.1 CDS Ppha_2785 NC_011060.1 2879565 2880410 D PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2539 hypothetical protein; metallophosphoesterase 2879565..2880410 Pelodictyon phaeoclathratiforme BU-1 6461017 YP_002019554.1 CDS Ppha_2786 NC_011060.1 2880427 2880702 R KEGG: ppd:Ppro_0176 hypothetical protein; hypothetical protein complement(2880427..2880702) Pelodictyon phaeoclathratiforme BU-1 6462446 YP_002019555.1 CDS Ppha_2787 NC_011060.1 2880761 2881579 R PFAM: DNA/RNA non-specific endonuclease; KEGG: bvi:Bcep1808_6848 DNA/RNA non-specific endonuclease; DNA/RNA non-specific endonuclease complement(2880761..2881579) Pelodictyon phaeoclathratiforme BU-1 6462622 YP_002019556.1 CDS mscL NC_011060.1 2881783 2882238 R forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(2881783..2882238) Pelodictyon phaeoclathratiforme BU-1 6461896 YP_002019557.1 CDS Ppha_2789 NC_011060.1 2882353 2883639 R PFAM: Orn/Lys/Arg decarboxylase major region; aminotransferase class I and II; aminotransferase class-III; KEGG: csc:Csac_1225 glycine C-acetyltransferase; Glycine C-acetyltransferase complement(2882353..2883639) Pelodictyon phaeoclathratiforme BU-1 6461541 YP_002019558.1 CDS Ppha_2790 NC_011060.1 2883853 2884275 R KEGG: cch:Cag_0810 DEAD/DEAH box helicase-like; DEAD/DEAH box helicase complement(2883853..2884275) Pelodictyon phaeoclathratiforme BU-1 6462117 YP_002019559.1 CDS Ppha_2791 NC_011060.1 2884317 2884799 R KEGG: bpd:BURPS668_3905 hypothetical protein; hypothetical protein complement(2884317..2884799) Pelodictyon phaeoclathratiforme BU-1 6461599 YP_002019560.1 CDS Ppha_2792 NC_011060.1 2884786 2885934 R PFAM: protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: bpd:BURPS668_3906 hypothetical protein; hypothetical protein complement(2884786..2885934) Pelodictyon phaeoclathratiforme BU-1 6462548 YP_002019561.1 CDS Ppha_2794 NC_011060.1 2886418 2886615 R KEGG: cph:Cpha266_1948 hypothetical protein; hypothetical protein complement(2886418..2886615) Pelodictyon phaeoclathratiforme BU-1 6461137 YP_002019562.1 CDS Ppha_2796 NC_011060.1 2886981 2888090 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cph:Cpha266_2553 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(2886981..2888090) Pelodictyon phaeoclathratiforme BU-1 6461391 YP_002019563.1 CDS Ppha_2797 NC_011060.1 2888147 2889097 D KEGG: cph:Cpha266_2554 hypothetical protein; hypothetical protein 2888147..2889097 Pelodictyon phaeoclathratiforme BU-1 6461467 YP_002019564.1 CDS Ppha_2798 NC_011060.1 2889143 2889409 R TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: cch:Cag_1970 hypothetical protein; FmdB family regulatory protein complement(2889143..2889409) Pelodictyon phaeoclathratiforme BU-1 6461420 YP_002019565.1 CDS Ppha_2799 NC_011060.1 2889550 2890335 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: cch:Cag_1969 recombination protein O, RecO; DNA repair protein RecO 2889550..2890335 Pelodictyon phaeoclathratiforme BU-1 6462440 YP_002019566.1 CDS Ppha_2800 NC_011060.1 2890447 2891742 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2890447..2891742 Pelodictyon phaeoclathratiforme BU-1 6461159 YP_002019567.1 CDS Ppha_2801 NC_011060.1 2891797 2892132 R PFAM: protein of unknown function DUF190; KEGG: plt:Plut_2039 hypothetical protein; hypothetical protein complement(2891797..2892132) Pelodictyon phaeoclathratiforme BU-1 6461052 YP_002019568.1 CDS Ppha_2802 NC_011060.1 2892145 2892528 R may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB complement(2892145..2892528) Pelodictyon phaeoclathratiforme BU-1 6462433 YP_002019569.1 CDS Ppha_2803 NC_011060.1 2892573 2892803 R KEGG: cch:Cag_0013 hypothetical protein; hypothetical protein complement(2892573..2892803) Pelodictyon phaeoclathratiforme BU-1 6462459 YP_002019570.1 CDS Ppha_2804 NC_011060.1 2892902 2893522 R PFAM: SOUL heme-binding protein; KEGG: cph:Cpha266_2566 SOUL heme-binding protein; SOUL heme-binding protein complement(2892902..2893522) Pelodictyon phaeoclathratiforme BU-1 6462340 YP_002019571.1 CDS Ppha_2805 NC_011060.1 2893778 2894215 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cch:Cag_0014 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 2893778..2894215 Pelodictyon phaeoclathratiforme BU-1 6462441 YP_002019572.1 CDS pyrE NC_011060.1 2894326 2894892 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2894326..2894892 Pelodictyon phaeoclathratiforme BU-1 6461644 YP_002019573.1 CDS Ppha_2807 NC_011060.1 2894897 2895766 D PFAM: Prephenate dehydrogenase; KEGG: cph:Cpha266_2572 prephenate dehydrogenase; prephenate dehydrogenase 2894897..2895766 Pelodictyon phaeoclathratiforme BU-1 6461508 YP_002019574.1 CDS Ppha_2808 NC_011060.1 2895763 2896629 D PFAM: ATP-NAD/AcoX kinase; KEGG: plt:Plut_2050 NAD(+) kinase; ATP-NAD/AcoX kinase 2895763..2896629 Pelodictyon phaeoclathratiforme BU-1 6461727 YP_002019575.1 CDS Ppha_2809 NC_011060.1 2896690 2898168 D KEGG: cph:Cpha266_2574 hypothetical protein; hypothetical protein 2896690..2898168 Pelodictyon phaeoclathratiforme BU-1 6461923 YP_002019576.1 CDS Ppha_2810 NC_011060.1 2898173 2898724 R TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cch:Cag_1975 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(2898173..2898724) Pelodictyon phaeoclathratiforme BU-1 6462491 YP_002019577.1 CDS Ppha_2811 NC_011060.1 2898763 2899593 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2898763..2899593) Pelodictyon phaeoclathratiforme BU-1 6463819 YP_002019578.1 CDS Ppha_2812 NC_011060.1 2899715 2901037 D PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2577 ATPase AAA-2 domain protein; ATPase AAA-2 domain-containing protein 2899715..2901037 Pelodictyon phaeoclathratiforme BU-1 6460859 YP_002019579.1 CDS Ppha_2813 NC_011060.1 2901106 2902233 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2578 glycoside hydrolase, family 3 domain protein; beta-N-acetylhexosaminidase 2901106..2902233 Pelodictyon phaeoclathratiforme BU-1 6460870 YP_002019580.1 CDS Ppha_2814 NC_011060.1 2902230 2902724 D PFAM: Phosphoglycerate mutase; KEGG: cph:Cpha266_2579 phosphohistidine phosphatase, SixA; phosphohistidine phosphatase SixA 2902230..2902724 Pelodictyon phaeoclathratiforme BU-1 6460878 YP_002019581.1 CDS gpsA NC_011060.1 2902729 2903730 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2902729..2903730) Pelodictyon phaeoclathratiforme BU-1 6460874 YP_002019582.1 CDS Ppha_2816 NC_011060.1 2903747 2904454 R PFAM: protein of unknown function DUF205; KEGG: pvi:Cvib_1700 acyl-phosphate glycerol-3-phosphate acyltransferase; membrane protein complement(2903747..2904454) Pelodictyon phaeoclathratiforme BU-1 6460887 YP_002019583.1 CDS Ppha_2817 NC_011060.1 2904475 2905467 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(2904475..2905467) Pelodictyon phaeoclathratiforme BU-1 6463084 YP_002019584.1 CDS Ppha_2818 NC_011060.1 2905537 2906952 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(2905537..2906952) Pelodictyon phaeoclathratiforme BU-1 6463096 YP_002019585.1 CDS Ppha_2819 NC_011060.1 2907211 2907690 D PFAM: NLP/P60 protein; KEGG: cph:Cpha266_2584 NLP/P60 protein; NLP/P60 protein 2907211..2907690 Pelodictyon phaeoclathratiforme BU-1 6463110 YP_002019586.1 CDS prmA NC_011060.1 2907795 2908661 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 2907795..2908661 Pelodictyon phaeoclathratiforme BU-1 6460892 YP_002019587.1 CDS Ppha_2821 NC_011060.1 2908658 2909596 D PFAM: Ppx/GppA phosphatase; KEGG: cch:Cag_2019 exopolyphosphatase; Ppx/GppA phosphatase 2908658..2909596 Pelodictyon phaeoclathratiforme BU-1 6460911 YP_002019588.1 CDS Ppha_2822 NC_011060.1 2909529 2910791 R KEGG: cph:Cpha266_2587 hypothetical protein; hypothetical protein complement(2909529..2910791) Pelodictyon phaeoclathratiforme BU-1 6460898 YP_002019589.1 CDS Ppha_2823 NC_011060.1 2910860 2911753 R KEGG: vha:VIBHAR_p08196 hypothetical protein; hypothetical protein complement(2910860..2911753) Pelodictyon phaeoclathratiforme BU-1 6460921 YP_002019590.1 CDS Ppha_2824 NC_011060.1 2911908 2912387 R KEGG: mar:MAE_61600 predicted nucleic acid-binding protein; nucleic acid-binding protein complement(2911908..2912387) Pelodictyon phaeoclathratiforme BU-1 6460922 YP_002019591.1 CDS Ppha_2825 NC_011060.1 2912384 2912662 R KEGG: mar:MAE_46960 hypothetical protein; hypothetical protein complement(2912384..2912662) Pelodictyon phaeoclathratiforme BU-1 6460928 YP_002019592.1 CDS Ppha_2826 NC_011060.1 2912960 2913241 D KEGG: cph:Cpha266_1379 transcriptional regulator, CopG family; CopG family transcriptional regulator 2912960..2913241 Pelodictyon phaeoclathratiforme BU-1 6460943 YP_002019593.1 CDS Ppha_2828 NC_011060.1 2913711 2915168 R KEGG: tex:Teth514_0739 ATPase (AAA+ superfamily)-like protein; ATPase -like protein complement(2913711..2915168) Pelodictyon phaeoclathratiforme BU-1 6460958 YP_002019594.1 CDS Ppha_2830 NC_011060.1 2915698 2915937 D KEGG: cph:Cpha266_0070 helix-turn-helix protein, CopG family; helix-turn-helix protein, CopG family 2915698..2915937 Pelodictyon phaeoclathratiforme BU-1 6460976 YP_002019595.1 CDS Ppha_2832 NC_011060.1 2916265 2918007 D PFAM: SMC domain protein; KEGG: vei:Veis_4173 SMC domain protein; SMC domain-containing protein 2916265..2918007 Pelodictyon phaeoclathratiforme BU-1 6461014 YP_002019596.1 CDS Ppha_2833 NC_011060.1 2918080 2919786 R PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_2588 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2918080..2919786) Pelodictyon phaeoclathratiforme BU-1 6461008 YP_002019597.1 CDS Ppha_2834 NC_011060.1 2919853 2921145 R TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cch:Cag_0083 adenosylmethionine--8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2919853..2921145) Pelodictyon phaeoclathratiforme BU-1 6461024 YP_002019598.1 CDS Ppha_2835 NC_011060.1 2921173 2921850 R TIGRFAM: dethiobiotin synthase; KEGG: cch:Cag_0082 dithiobiotin synthetase; dethiobiotin synthase complement(2921173..2921850) Pelodictyon phaeoclathratiforme BU-1 6461059 YP_002019599.1 CDS Ppha_2836 NC_011060.1 2921847 2922629 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_2067 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(2921847..2922629) Pelodictyon phaeoclathratiforme BU-1 6461058 YP_002019600.1 CDS Ppha_2837 NC_011060.1 2922617 2923306 R PFAM: protein of unknown function DUF452; KEGG: plt:Plut_2068 hypothetical protein; hypothetical protein complement(2922617..2923306) Pelodictyon phaeoclathratiforme BU-1 6461089 YP_002019601.1 CDS Ppha_2838 NC_011060.1 2923303 2924472 R PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: plt:Plut_2069 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase complement(2923303..2924472) Pelodictyon phaeoclathratiforme BU-1 6461097 YP_002019602.1 CDS Ppha_2839 NC_011060.1 2924487 2925500 R KEGG: pvi:Cvib_1711 biotin synthase; PFAM: radical SAM protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2924487..2925500) Pelodictyon phaeoclathratiforme BU-1 6461119 YP_002019603.1 CDS Ppha_2840 NC_011060.1 2925517 2926503 R KEGG: cph:Cpha266_0111 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin--acetyl-CoA-carboxylase ligase complement(2925517..2926503) Pelodictyon phaeoclathratiforme BU-1 6461130 YP_002019604.1 CDS Ppha_2841 NC_011060.1 2926629 2928356 R PFAM: cell wall hydrolase/autolysin; KEGG: plt:Plut_2072 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(2926629..2928356) Pelodictyon phaeoclathratiforme BU-1 6461162 YP_002019605.1 CDS Ppha_2842 NC_011060.1 2928588 2930984 D KEGG: cph:Cpha266_0109 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 2928588..2930984 Pelodictyon phaeoclathratiforme BU-1 6461173 YP_002019606.1 CDS Ppha_2843 NC_011060.1 2930974 2933112 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cph:Cpha266_0108 ferrous iron transport protein B; ferrous iron transport protein B complement(2930974..2933112) Pelodictyon phaeoclathratiforme BU-1 6461197 YP_002019607.1 CDS Ppha_2844 NC_011060.1 2933109 2933375 R PFAM: FeoA family protein; KEGG: plt:Plut_2075 ferrous iron transport protein A; FeoA family protein complement(2933109..2933375) Pelodictyon phaeoclathratiforme BU-1 6461208 YP_002019608.1 CDS Ppha_2845 NC_011060.1 2933478 2933858 R PFAM: histidine triad (HIT) protein; KEGG: pvi:Cvib_1717 histidine triad (HIT) protein; histidine triad (HIT) protein complement(2933478..2933858) Pelodictyon phaeoclathratiforme BU-1 6461214 YP_002019609.1 CDS Ppha_2846 NC_011060.1 2934000 2935331 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cph:Cpha266_0098 protein of unknown function DUF21; hypothetical protein complement(2934000..2935331) Pelodictyon phaeoclathratiforme BU-1 6461240 YP_002019610.1 CDS Ppha_2847 NC_011060.1 2935672 2936208 R PFAM: hypothetical protein-containing protein; hypothetical protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 hypothetical protein; hypothetical protein complement(2935672..2936208) Pelodictyon phaeoclathratiforme BU-1 6461235 YP_002019611.1 CDS Ppha_2848 NC_011060.1 2936334 2938523 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: mag:amb0540 outer membrane receptor protein; TonB-dependent receptor complement(2936334..2938523) Pelodictyon phaeoclathratiforme BU-1 6461249 YP_002019612.1 CDS Ppha_2849 NC_011060.1 2938714 2939100 R hypothetical protein complement(2938714..2939100) Pelodictyon phaeoclathratiforme BU-1 6461247 YP_002019613.1 CDS Ppha_2850 NC_011060.1 2939346 2939750 R KEGG: cch:Cag_1113 hypothetical protein; hypothetical protein complement(2939346..2939750) Pelodictyon phaeoclathratiforme BU-1 6461263 YP_002019614.1 CDS Ppha_2851 NC_011060.1 2940137 2940910 R PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_2080 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; succinate dehydrogenase/fumarate reductase iron-sulfur subunit complement(2940137..2940910) Pelodictyon phaeoclathratiforme BU-1 6461268 YP_002019615.1 CDS sdhA NC_011060.1 2940920 2942860 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2940920..2942860) Pelodictyon phaeoclathratiforme BU-1 6461280 YP_002019616.1 CDS Ppha_2853 NC_011060.1 2942919 2943581 R TIGRFAM: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family; KEGG: cph:Cpha266_0102 succinate dehydrogenase subunit C; succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family complement(2942919..2943581) Pelodictyon phaeoclathratiforme BU-1 6461304 YP_002019617.1 CDS Ppha_2854 NC_011060.1 2943685 2944326 R PFAM: cyclase family protein; KEGG: cch:Cag_1936 hypothetical protein; cyclase family protein complement(2943685..2944326) Pelodictyon phaeoclathratiforme BU-1 6461303 YP_002019618.1 CDS Ppha_2855 NC_011060.1 2944326 2945246 R KEGG: plt:Plut_2086 lysophospholipase L2; Esterase/lipase-like protein complement(2944326..2945246) Pelodictyon phaeoclathratiforme BU-1 6461314 YP_002019619.1 CDS Ppha_2856 NC_011060.1 2945269 2945733 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pvi:Cvib_1727 rare lipoprotein A; rare lipoprotein A 2945269..2945733 Pelodictyon phaeoclathratiforme BU-1 6461328 YP_002019620.1 CDS Ppha_2857 NC_011060.1 2945738 2946631 R PFAM: protein of unknown function DUF89; KEGG: cph:Cpha266_1577 protein of unknown function DUF89; hypothetical protein complement(2945738..2946631) Pelodictyon phaeoclathratiforme BU-1 6461349 YP_002019621.1 CDS Ppha_2858 NC_011060.1 2946732 2947745 R PFAM: beta-lactamase domain protein; KEGG: pde:Pden_4160 SoxH protein-like; beta-lactamase domain-containing protein complement(2946732..2947745) Pelodictyon phaeoclathratiforme BU-1 6462518 YP_002019622.1 CDS Ppha_2859 NC_011060.1 2947810 2948868 R TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cph:Cpha266_0466 arsenical-resistance protein; arsenical-resistance protein complement(2947810..2948868) Pelodictyon phaeoclathratiforme BU-1 6461360 YP_002019623.1 CDS Ppha_2860 NC_011060.1 2948873 2949262 R SMART: Rhodanese domain protein; KEGG: cph:Cpha266_0463 rhodanese domain protein; rhodanese domain-containing protein complement(2948873..2949262) Pelodictyon phaeoclathratiforme BU-1 6462481 YP_002019624.1 CDS Ppha_2861 NC_011060.1 2949281 2949418 R hypothetical protein complement(2949281..2949418) Pelodictyon phaeoclathratiforme BU-1 6461370 YP_002019625.1 CDS Ppha_2862 NC_011060.1 2949431 2949604 R hypothetical protein complement(2949431..2949604) Pelodictyon phaeoclathratiforme BU-1 6461388 YP_002019626.1 CDS Ppha_2863 NC_011060.1 2949644 2950099 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cph:Cpha266_0918 protein tyrosine phosphatase; protein tyrosine phosphatase complement(2949644..2950099) Pelodictyon phaeoclathratiforme BU-1 6461408 YP_002019627.1 CDS Ppha_2864 NC_011060.1 2950134 2950820 R TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: cte:CT0900 phosphate transport system regulatory protein; phosphate uptake regulator PhoU complement(2950134..2950820) Pelodictyon phaeoclathratiforme BU-1 6461400 YP_002019628.1 CDS Ppha_2865 NC_011060.1 2951277 2951480 R KEGG: swo:Swol_2490 hypothetical protein; hypothetical protein complement(2951277..2951480) Pelodictyon phaeoclathratiforme BU-1 6461417 YP_002019629.1 CDS Ppha_2866 NC_011060.1 2951480 2951923 R KEGG: ajs:Ajs_3020 hypothetical protein; hypothetical protein complement(2951480..2951923) Pelodictyon phaeoclathratiforme BU-1 6461438 YP_002019630.1 CDS Ppha_2867 NC_011060.1 2952250 2952429 R hypothetical protein complement(2952250..2952429) Pelodictyon phaeoclathratiforme BU-1 6461434 YP_002019631.1 CDS Ppha_2868 NC_011060.1 2952761 2953672 R PFAM: Abortive infection protein; KEGG: mth:MTH623 hypothetical protein; abortive infection protein complement(2952761..2953672) Pelodictyon phaeoclathratiforme BU-1 6461458 YP_002019632.1 CDS Ppha_2869 NC_011060.1 2953674 2954903 R KEGG: ngo:NGO1209 DNA cytosine methyltransferase M.NgoMIII; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(2953674..2954903) Pelodictyon phaeoclathratiforme BU-1 6461479 YP_002019633.1 CDS Ppha_2870 NC_011060.1 2954900 2955547 R KEGG: ngo:NGO1208 NgoMIIIM; hypothetical protein complement(2954900..2955547) Pelodictyon phaeoclathratiforme BU-1 6461492 YP_002019634.1 CDS Ppha_2873 NC_011060.1 2956808 2959300 R PFAM: hypothetical protein-containing protein; hypothetical protein; SEFIR domain protein; SMART: Tetratricopeptide domain protein; KEGG: rru:Rru_A1817 hypothetical protein; SEFIR domain-containing protein complement(2956808..2959300) Pelodictyon phaeoclathratiforme BU-1 6461550 YP_002019635.1 CDS Ppha_2875 NC_011060.1 2959873 2960541 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(2959873..2960541) Pelodictyon phaeoclathratiforme BU-1 6461576 YP_002019636.1 CDS Ppha_2876 NC_011060.1 2960551 2961600 R transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine; deoxyhypusine synthase-like protein complement(2960551..2961600) Pelodictyon phaeoclathratiforme BU-1 6461611 YP_002019637.1 CDS Ppha_2877 NC_011060.1 2961956 2963002 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2961956..2963002 Pelodictyon phaeoclathratiforme BU-1 6461669 YP_002019638.1 CDS Ppha_2878 NC_011060.1 2963009 2963710 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0071 beta-phosphoglucomutase hydrolase; beta-phosphoglucomutase family hydrolase 2963009..2963710 Pelodictyon phaeoclathratiforme BU-1 6461646 YP_002019639.1 CDS argS NC_011060.1 2963720 2965378 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2963720..2965378 Pelodictyon phaeoclathratiforme BU-1 6461682 YP_002019640.1 CDS Ppha_2880 NC_011060.1 2965341 2965985 R TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: pvi:Cvib_1733 nicotinate (nicotinamide) nucleotide adenylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(2965341..2965985) Pelodictyon phaeoclathratiforme BU-1 6461673 YP_002019641.1 CDS Ppha_2881 NC_011060.1 2966001 2966897 R KEGG: cph:Cpha266_2704 lipoprotein; lipoprotein complement(2966001..2966897) Pelodictyon phaeoclathratiforme BU-1 6461694 YP_002019642.1 CDS Ppha_2882 NC_011060.1 2967290 2967826 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(2967290..2967826) Pelodictyon phaeoclathratiforme BU-1 6461712 YP_002019643.1 CDS Ppha_2883 NC_011060.1 2967843 2968370 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(2967843..2968370) Pelodictyon phaeoclathratiforme BU-1 6461725 YP_002019644.1 CDS Ppha_2884 NC_011060.1 2968473 2968694 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: cch:Cag_0065 ATP synthase F0, C subunit; ATP synthase F0 subunit C complement(2968473..2968694) Pelodictyon phaeoclathratiforme BU-1 6462534 YP_002019645.1 CDS Ppha_2885 NC_011060.1 2968814 2969836 R produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(2968814..2969836) Pelodictyon phaeoclathratiforme BU-1 6461744 YP_002019646.1 CDS Ppha_2886 NC_011060.1 2969833 2970219 R KEGG: plt:Plut_2099 hypothetical protein; hypothetical protein complement(2969833..2970219) Pelodictyon phaeoclathratiforme BU-1 6461792 YP_002019647.1 CDS Ppha_2887 NC_011060.1 2970266 2970511 R KEGG: cph:Cpha266_2711 hypothetical protein; hypothetical protein complement(2970266..2970511) Pelodictyon phaeoclathratiforme BU-1 6461772 YP_002019648.1 CDS Ppha_2888 NC_011060.1 2970762 2971580 D PFAM: protein of unknown function DUF152; KEGG: cch:Cag_0061 protein of unknown function DUF152; hypothetical protein 2970762..2971580 Pelodictyon phaeoclathratiforme BU-1 6461782 YP_002019649.1 CDS Ppha_2889 NC_011060.1 2971626 2972918 R PFAM: acetyl-CoA hydrolase/transferase; KEGG: plt:Plut_2104 4-hydroxybutyrate coenzyme A transferase; acetyl-CoA hydrolase/transferase complement(2971626..2972918) Pelodictyon phaeoclathratiforme BU-1 6461817 YP_002019650.1 CDS Ppha_2890 NC_011060.1 2972952 2974244 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2972952..2974244) Pelodictyon phaeoclathratiforme BU-1 6461814 YP_002019651.1 CDS Ppha_2891 NC_011060.1 2974287 2975588 R PFAM: cell division protein FtsA; KEGG: cch:Cag_0058 cell division protein FtsA; cell division protein FtsA complement(2974287..2975588) Pelodictyon phaeoclathratiforme BU-1 6461838 YP_002019652.1 CDS Ppha_2892 NC_011060.1 2975610 2976413 R PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cph:Cpha266_2718 polypeptide-transport-associated domain protein, FtsQ-type; Polypeptide-transport-associated domain-containing protein FtsQ-type complement(2975610..2976413) Pelodictyon phaeoclathratiforme BU-1 6462438 YP_002019653.1 CDS murC NC_011060.1 2976410 2977849 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2976410..2977849) Pelodictyon phaeoclathratiforme BU-1 6461857 YP_002019654.1 CDS murG NC_011060.1 2977864 2978961 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2977864..2978961) Pelodictyon phaeoclathratiforme BU-1 6461887 YP_002019655.1 CDS Ppha_2895 NC_011060.1 2978958 2980187 R PFAM: cell cycle protein; KEGG: cph:Cpha266_2722 cell cycle protein; cell cycle protein complement(2978958..2980187) Pelodictyon phaeoclathratiforme BU-1 6461878 YP_002019656.1 CDS Ppha_2896 NC_011060.1 2980160 2981554 R TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cch:Cag_0053 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(2980160..2981554) Pelodictyon phaeoclathratiforme BU-1 6461901 YP_002019657.1 CDS mraY NC_011060.1 2981560 2982666 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2981560..2982666) Pelodictyon phaeoclathratiforme BU-1 6461909 YP_002019658.1 CDS Ppha_2898 NC_011060.1 2982670 2985687 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_2726 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase complement(2982670..2985687) Pelodictyon phaeoclathratiforme BU-1 6461921 YP_002019659.1 CDS Ppha_2899 NC_011060.1 2985684 2987726 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cph:Cpha266_2727 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(2985684..2987726) Pelodictyon phaeoclathratiforme BU-1 6461938 YP_002019660.1 CDS Ppha_2900 NC_011060.1 2987758 2988189 R KEGG: cph:Cpha266_2728 hypothetical protein; hypothetical protein complement(2987758..2988189) Pelodictyon phaeoclathratiforme BU-1 6461927 YP_002019661.1 CDS Ppha_2901 NC_011060.1 2988176 2989174 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cph:Cpha266_2729 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW complement(2988176..2989174) Pelodictyon phaeoclathratiforme BU-1 6461945 YP_002019662.1 CDS Ppha_2902 NC_011060.1 2989174 2989632 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2989174..2989632) Pelodictyon phaeoclathratiforme BU-1 6461966 YP_002019663.1 CDS Ppha_2903 NC_011060.1 2989859 2990389 D KEGG: pvi:Cvib_1763 hypothetical protein; hypothetical protein 2989859..2990389 Pelodictyon phaeoclathratiforme BU-1 6461984 YP_002019664.1 CDS Ppha_2904 NC_011060.1 2990457 2990786 D PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase; Chorismate mutase 2990457..2990786 Pelodictyon phaeoclathratiforme BU-1 6462104 YP_002019665.1 CDS Ppha_2905 NC_011060.1 2990801 2991814 D PFAM: aminodeoxychorismate lyase; KEGG: cph:Cpha266_2733 aminodeoxychorismate lyase; aminodeoxychorismate lyase 2990801..2991814 Pelodictyon phaeoclathratiforme BU-1 6462027 YP_002019666.1 CDS pgk NC_011060.1 2991919 2993112 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2991919..2993112 Pelodictyon phaeoclathratiforme BU-1 6462157 YP_002019667.1 CDS Ppha_2907 NC_011060.1 2993175 2993996 D PFAM: Rhomboid family protein; KEGG: cph:Cpha266_2735 rhomboid family protein; rhomboid family protein 2993175..2993996 Pelodictyon phaeoclathratiforme BU-1 6462047 YP_002019668.1 CDS Ppha_2908 NC_011060.1 2993993 2994451 D PFAM: protein of unknown function DUF1232; KEGG: plt:Plut_2125 hypothetical protein; hypothetical protein 2993993..2994451 Pelodictyon phaeoclathratiforme BU-1 6462194 YP_002019669.1 CDS Ppha_2909 NC_011060.1 2994429 2995895 R TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: plt:Plut_2126 23S rRNA methyltransferase; TrmA family RNA methyltransferase complement(2994429..2995895) Pelodictyon phaeoclathratiforme BU-1 6462085 YP_002019670.1 CDS Ppha_2911 NC_011060.1 2996724 3000062 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases; KEGG: psa:PST_3195 ATP-dependent helicase HEPA; helicase domain-containing protein 2996724..3000062 Pelodictyon phaeoclathratiforme BU-1 6462138 YP_002019671.1 CDS Ppha_2912 NC_011060.1 3000067 3004083 D KEGG: rrs:RoseRS_0299 hypothetical protein; hypothetical protein 3000067..3004083 Pelodictyon phaeoclathratiforme BU-1 6462161 YP_002019672.1 CDS Ppha_2913 NC_011060.1 3004080 3005633 D KEGG: cth:Cthe_1161 hypothetical protein; hypothetical protein 3004080..3005633 Pelodictyon phaeoclathratiforme BU-1 6462175 YP_002019673.1 CDS Ppha_2914 NC_011060.1 3005959 3006675 D KEGG: cph:Cpha266_1605 hypothetical protein; hypothetical protein 3005959..3006675 Pelodictyon phaeoclathratiforme BU-1 6462096 YP_002019674.1 CDS Ppha_2915 NC_011060.1 3006672 3007124 D KEGG: cph:Cpha266_1606 hypothetical protein; hypothetical protein 3006672..3007124 Pelodictyon phaeoclathratiforme BU-1 6462108 YP_002019675.1 CDS Ppha_2916 NC_011060.1 3007428 3007679 R hypothetical protein complement(3007428..3007679) Pelodictyon phaeoclathratiforme BU-1 6462118 YP_002019676.1 CDS Ppha_2917 NC_011060.1 3007830 3012665 R PFAM: hypothetical protein-containing protein; hypothetical protein; SEFIR domain protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_3004 hypothetical protein protein; SEFIR domain-containing protein complement(3007830..3012665) Pelodictyon phaeoclathratiforme BU-1 6462125 YP_002019677.1 CDS Ppha_2918 NC_011060.1 3012911 3013477 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mag:amb2384 peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(3012911..3013477) Pelodictyon phaeoclathratiforme BU-1 6462156 YP_002019678.1 CDS Ppha_2919 NC_011060.1 3013528 3014442 R PFAM: ROK family protein; KEGG: cph:Cpha266_2738 N-acetylglucosamine kinase; ROK family protein complement(3013528..3014442) Pelodictyon phaeoclathratiforme BU-1 6462082 YP_002019679.1 CDS Ppha_2920 NC_011060.1 3014435 3015040 R PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_1770 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(3014435..3015040) Pelodictyon phaeoclathratiforme BU-1 6462181 YP_002019680.1 CDS Ppha_2921 NC_011060.1 3015046 3016797 R PFAM: 60 kDa inner membrane insertion protein; KEGG: cch:Cag_2030 Oxa1/60 kDa IMP family protein; 60 kDa inner membrane insertion protein complement(3015046..3016797) Pelodictyon phaeoclathratiforme BU-1 6462275 YP_002019681.1 CDS Ppha_2922 NC_011060.1 3016790 3017083 R PFAM: protein of unknown function DUF37; KEGG: cch:Cag_2031 protein of unknown function DUF37; hypothetical protein complement(3016790..3017083) Pelodictyon phaeoclathratiforme BU-1 6462281 YP_002019682.1 CDS rnpA NC_011060.1 3017140 3017550 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3017140..3017550) Pelodictyon phaeoclathratiforme BU-1 6462288 YP_002019683.1 CDS rpmH NC_011060.1 3017605 3017766 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3017605..3017766) Pelodictyon phaeoclathratiforme BU-1 6462242 Ppha_R0001 tRNA Ppha_R0001 NC_011060.1 46796 46868 R tRNA-Thr complement(46796..46868) Pelodictyon phaeoclathratiforme BU-1 6462718 Ppha_R0002 tRNA Ppha_R0002 NC_011060.1 84404 84477 D tRNA-Val 84404..84477 Pelodictyon phaeoclathratiforme BU-1 6462016 Ppha_R0004 tRNA Ppha_R0004 NC_011060.1 105723 105799 D tRNA-Ile 105723..105799 Pelodictyon phaeoclathratiforme BU-1 6461649 Ppha_R0005 tRNA Ppha_R0005 NC_011060.1 105835 105907 D tRNA-Ala 105835..105907 Pelodictyon phaeoclathratiforme BU-1 6461498 Ppha_R0009 tRNA Ppha_R0009 NC_011060.1 116826 116902 D tRNA-Ile 116826..116902 Pelodictyon phaeoclathratiforme BU-1 6462519 Ppha_R0010 tRNA Ppha_R0010 NC_011060.1 116938 117010 D tRNA-Ala 116938..117010 Pelodictyon phaeoclathratiforme BU-1 6461662 Ppha_R0013 tRNA Ppha_R0013 NC_011060.1 198415 198486 D tRNA-Asn 198415..198486 Pelodictyon phaeoclathratiforme BU-1 6461316 Ppha_R0014 tRNA Ppha_R0014 NC_011060.1 293222 293297 D tRNA-Gly 293222..293297 Pelodictyon phaeoclathratiforme BU-1 6460996 Ppha_R0015 tRNA Ppha_R0015 NC_011060.1 412224 412296 D tRNA-Lys 412224..412296 Pelodictyon phaeoclathratiforme BU-1 6462243 Ppha_R0016 tRNA Ppha_R0016 NC_011060.1 412331 412412 D tRNA-Leu 412331..412412 Pelodictyon phaeoclathratiforme BU-1 6462234 Ppha_R0017 tRNA Ppha_R0017 NC_011060.1 452501 452576 D tRNA-Phe 452501..452576 Pelodictyon phaeoclathratiforme BU-1 6462143 Ppha_R0018 tRNA Ppha_R0018 NC_011060.1 822242 822315 D tRNA-Val 822242..822315 Pelodictyon phaeoclathratiforme BU-1 6461302 Ppha_R0019 tRNA Ppha_R0019 NC_011060.1 890850 890926 R tRNA-Gln complement(890850..890926) Pelodictyon phaeoclathratiforme BU-1 6461145 Ppha_R0020 tRNA Ppha_R0020 NC_011060.1 891919 891992 R tRNA-Arg complement(891919..891992) Pelodictyon phaeoclathratiforme BU-1 6461142 Ppha_R0021 tRNA Ppha_R0021 NC_011060.1 891999 892075 R tRNA-Glu complement(891999..892075) Pelodictyon phaeoclathratiforme BU-1 6461141 Ppha_R0022 tRNA Ppha_R0022 NC_011060.1 892103 892179 R tRNA-Met complement(892103..892179) Pelodictyon phaeoclathratiforme BU-1 6461140 Ppha_R0024 tRNA Ppha_R0024 NC_011060.1 1186384 1186460 D tRNA-Ile 1186384..1186460 Pelodictyon phaeoclathratiforme BU-1 6461510 Ppha_R0025 tRNA Ppha_R0025 NC_011060.1 1186496 1186568 D tRNA-Ala 1186496..1186568 Pelodictyon phaeoclathratiforme BU-1 6461827 Ppha_R0028 tRNA Ppha_R0028 NC_011060.1 1190291 1190367 R tRNA-Val complement(1190291..1190367) Pelodictyon phaeoclathratiforme BU-1 6461042 Ppha_R0029 tRNA Ppha_R0029 NC_011060.1 1234141 1234213 D tRNA-Arg 1234141..1234213 Pelodictyon phaeoclathratiforme BU-1 6462858 Ppha_R0030 tRNA Ppha_R0030 NC_011060.1 1234232 1234304 D tRNA-Pro 1234232..1234304 Pelodictyon phaeoclathratiforme BU-1 6462812 Ppha_R0031 tRNA Ppha_R0031 NC_011060.1 1249465 1249540 D tRNA-Met 1249465..1249540 Pelodictyon phaeoclathratiforme BU-1 6463042 Ppha_R0032 tRNA Ppha_R0032 NC_011060.1 1561933 1562006 D tRNA-Cys 1561933..1562006 Pelodictyon phaeoclathratiforme BU-1 6463516 Ppha_R0033 tRNA Ppha_R0033 NC_011060.1 1704656 1704732 D tRNA-Met 1704656..1704732 Pelodictyon phaeoclathratiforme BU-1 6463249 Ppha_R0034 tRNA Ppha_R0034 NC_011060.1 1704740 1704815 D tRNA-Gly 1704740..1704815 Pelodictyon phaeoclathratiforme BU-1 6463248 Ppha_R0035 tRNA Ppha_R0035 NC_011060.1 1740111 1740192 D tRNA-Leu 1740111..1740192 Pelodictyon phaeoclathratiforme BU-1 6463169 Ppha_R0036 tRNA Ppha_R0036 NC_011060.1 1890343 1890432 R tRNA-Ser complement(1890343..1890432) Pelodictyon phaeoclathratiforme BU-1 6461688 Ppha_R0037 tRNA Ppha_R0037 NC_011060.1 1890445 1890527 R tRNA-Ser complement(1890445..1890527) Pelodictyon phaeoclathratiforme BU-1 6461149 Ppha_R0038 tRNA Ppha_R0038 NC_011060.1 1890617 1890707 R tRNA-Ser complement(1890617..1890707) Pelodictyon phaeoclathratiforme BU-1 6461687 Ppha_R0039 tRNA Ppha_R0039 NC_011060.1 1966734 1966818 D tRNA-Leu 1966734..1966818 Pelodictyon phaeoclathratiforme BU-1 6463310 Ppha_R0040 tRNA Ppha_R0040 NC_011060.1 1966830 1966917 D tRNA-Leu 1966830..1966917 Pelodictyon phaeoclathratiforme BU-1 6463308 Ppha_R0041 tRNA Ppha_R0041 NC_011060.1 1989694 1989766 D tRNA-Gly 1989694..1989766 Pelodictyon phaeoclathratiforme BU-1 6463240 Ppha_R0042 tRNA Ppha_R0042 NC_011060.1 1990819 1990908 D tRNA-Ser 1990819..1990908 Pelodictyon phaeoclathratiforme BU-1 6463238 Ppha_R0043 tRNA Ppha_R0043 NC_011060.1 2171695 2171769 R tRNA-Lys complement(2171695..2171769) Pelodictyon phaeoclathratiforme BU-1 6462788 Ppha_R0044 tRNA Ppha_R0044 NC_011060.1 2178152 2178223 R tRNA-Glu complement(2178152..2178223) Pelodictyon phaeoclathratiforme BU-1 6462769 Ppha_R0045 tRNA Ppha_R0045 NC_011060.1 2178229 2178304 R tRNA-His complement(2178229..2178304) Pelodictyon phaeoclathratiforme BU-1 6462768 Ppha_R0046 tRNA Ppha_R0046 NC_011060.1 2178329 2178404 R tRNA-Arg complement(2178329..2178404) Pelodictyon phaeoclathratiforme BU-1 6462766 Ppha_R0047 tRNA Ppha_R0047 NC_011060.1 2178433 2178505 R tRNA-Pro complement(2178433..2178505) Pelodictyon phaeoclathratiforme BU-1 6462763 Ppha_R0048 tRNA Ppha_R0048 NC_011060.1 2183179 2183253 R tRNA-Gln complement(2183179..2183253) Pelodictyon phaeoclathratiforme BU-1 6462754 Ppha_R0049 tRNA Ppha_R0049 NC_011060.1 2361560 2361632 D tRNA-Ala 2361560..2361632 Pelodictyon phaeoclathratiforme BU-1 6461153 Ppha_R0050 tRNA Ppha_R0050 NC_011060.1 2500755 2500832 D tRNA-Asp 2500755..2500832 Pelodictyon phaeoclathratiforme BU-1 6461036 Ppha_R0051 tRNA Ppha_R0051 NC_011060.1 2702405 2702493 D tRNA-Leu 2702405..2702493 Pelodictyon phaeoclathratiforme BU-1 6461605 Ppha_R0052 tRNA Ppha_R0052 NC_011060.1 2730201 2730274 R tRNA-Pro complement(2730201..2730274) Pelodictyon phaeoclathratiforme BU-1 6461821 Ppha_R0053 tRNA Ppha_R0053 NC_011060.1 2774628 2774700 R tRNA-Trp complement(2774628..2774700) Pelodictyon phaeoclathratiforme BU-1 6462294 Ppha_R0054 tRNA Ppha_R0054 NC_011060.1 2774723 2774798 R tRNA-Thr complement(2774723..2774798) Pelodictyon phaeoclathratiforme BU-1 6462318 Ppha_R0055 tRNA Ppha_R0055 NC_011060.1 2774815 2774896 R tRNA-Tyr complement(2774815..2774896) Pelodictyon phaeoclathratiforme BU-1 6462390 Ppha_R0056 tRNA Ppha_R0056 NC_011060.1 2774908 2774980 R tRNA-Thr complement(2774908..2774980) Pelodictyon phaeoclathratiforme BU-1 6462317 Ppha_R0057 tRNA Ppha_R0057 NC_011060.1 2791151 2791223 R tRNA-Arg complement(2791151..2791223) Pelodictyon phaeoclathratiforme BU-1 6462516 Ppha_R0058 tRNA Ppha_R0058 NC_011060.1 2967113 2967188 R tRNA-Ala complement(2967113..2967188) Pelodictyon phaeoclathratiforme BU-1 6461703 Ppha_R0003 rRNA Ppha_R0003 NC_011060.1 104060 105554 D 16S ribosomal RNA 104060..105554 Pelodictyon phaeoclathratiforme BU-1 6461290 Ppha_R0006 rRNA Ppha_R0006 NC_011060.1 106046 108989 D 23S ribosomal RNA 106046..108989 Pelodictyon phaeoclathratiforme BU-1 6462578 Ppha_R0007 rRNA Ppha_R0007 NC_011060.1 109061 109169 D 5S ribosomal RNA 109061..109169 Pelodictyon phaeoclathratiforme BU-1 6462555 Ppha_R0008 rRNA Ppha_R0008 NC_011060.1 115163 116657 D 16S ribosomal RNA 115163..116657 Pelodictyon phaeoclathratiforme BU-1 6461447 Ppha_R0011 rRNA Ppha_R0011 NC_011060.1 117149 120092 D 23S ribosomal RNA 117149..120092 Pelodictyon phaeoclathratiforme BU-1 6461949 Ppha_R0012 rRNA Ppha_R0012 NC_011060.1 120164 120272 D 5S ribosomal RNA 120164..120272 Pelodictyon phaeoclathratiforme BU-1 6462524 Ppha_R0023 rRNA Ppha_R0023 NC_011060.1 1184721 1186215 D 16S ribosomal RNA 1184721..1186215 Pelodictyon phaeoclathratiforme BU-1 6461623 Ppha_R0026 rRNA Ppha_R0026 NC_011060.1 1186707 1189654 D 23S ribosomal RNA 1186707..1189654 Pelodictyon phaeoclathratiforme BU-1 6462285 Ppha_R0027 rRNA Ppha_R0027 NC_011060.1 1189720 1189828 D 5S ribosomal RNA 1189720..1189828 Pelodictyon phaeoclathratiforme BU-1 6461347