-- dump date 20240506_063344 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP098611.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP098611.1.REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam.REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: FullREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: YesREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0xREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeqREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38 CRISPR Arrays :: 10REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38 CRISPR Arrays :: 10 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP098611.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from Steven Hallam. ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38 CRISPR Arrays :: 10 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NZ_CP098612.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP098612.1.REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam.REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: FullREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: YesREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0xREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeqREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38 CRISPR Arrays :: 10REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38 CRISPR Arrays :: 10 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP098612.1. Bacteria and source DNA available from Steven Hallam. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Unicycler v. 0.4.8 Assembly Name :: UBC_Pyuhuli_1.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 170.0x Sequencing Technology :: Oxford Nanopore; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 09/13/2023 03:29:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,176 CDSs (total) :: 4,122 Genes (coding) :: 4,084 CDSs (with protein) :: 4,084 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 27 of 38 Pseudo Genes (internal stop) :: 3 of 38 Pseudo Genes (multiple problems) :: 3 of 38 CRISPR Arrays :: 10 ##Genome-Annotation-Data-END## COMPLETENESS: full length.