-- dump date   	20140619_235031
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001154787.1	KEGG: bpm:BURPS1710b_0301 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator, DnaA C-terminal domain; Chromosomal replication initiator, DnaA; SMART: AAA ATPase
YP_001154788.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001154789.1	KEGG: reu:Reut_A0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II
YP_001154790.1	PFAM: nuclear protein SET; KEGG: rme:Rmet_3537 nuclear protein SET
YP_001154791.1	KEGG: rso:RSc3357 hypothetical protein
YP_001154792.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_B0501 ABC-type transporter, ATPase component: HAAT family
YP_001154793.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA3429 ABC transporter subunit
YP_001154794.1	KEGG: reu:Reut_A3369 extracellular ligand-binding receptor
YP_001154795.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A3659 ABC-type transporter, permease component
YP_001154796.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A3658 ABC-type transporter, permease component
YP_001154797.1	PFAM: aminoglycoside phosphotransferase; KEGG: ajs:Ajs_0232 aminoglycoside phosphotransferase
YP_001154798.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ajs:Ajs_0231 short-chain dehydrogenase/reductase SDR
YP_001154799.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ajs:Ajs_0230 acyl-CoA dehydrogenase domain protein
YP_001154800.1	PFAM: protein of unknown function DUF81; KEGG: reu:Reut_A3365 protein of unknown function DUF81
YP_001154801.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001154802.1	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: azo:azo0142 probable methyltransferase GidB
YP_001154803.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rso:RSc3326  chromosome partitioning protein ParA
YP_001154804.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: rso:RSc3325  chromosome partitioning protein ParB
YP_001154805.1	KEGG: bps:BPSL3403  ATP synthase I AtpI
YP_001154806.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001154807.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_001154808.1	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: rme:Rmet_3498 ATP synthase F0, B subunit
YP_001154809.1	TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: rso:RSc3320 probable ATP synthase delta chain protein
YP_001154810.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001154811.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001154812.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001154813.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_001154814.1	KEGG: rme:Rmet_3491 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D)
YP_001154815.1	KEGG: bpa:BPP4131  primosomal protein; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_001154816.1	TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: rme:Rmet_3481 glycine cleavage system H protein
YP_001154817.1	PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A3268 beta-lactamase-like
YP_001154818.1	PFAM: fatty acid desaturase; KEGG: bps:BPSL2382  fatty acid desaturase
YP_001154819.1	PFAM: cytochrome c, class I; KEGG: reu:Reut_A3322 cytochrome c, class I
YP_001154820.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rso:RSc3266 hypothetical transmembrane protein
YP_001154821.1	TIGRFAM: phosphoheptose isomerase; KEGG: ngo:NGO1986 phosphoheptose isomerase
YP_001154822.1	PFAM: transport-associated; KEGG: rso:RSc3264 hypothetical signal peptide protein
YP_001154823.1	PFAM: cytochrome c, class I; KEGG: rso:RSc3260 probable cytochrome c transmembrane protein
YP_001154824.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bps:BPSL3237 hypothetical protein
YP_001154825.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001154826.1	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: bps:BPSL3227 preprotein translocase SecE subunit
YP_001154827.1	KEGG: reh:H16_A3502 transcription antitermination protein; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein
YP_001154828.1	binds directly to 23S ribosomal RNA
YP_001154829.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001154830.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001154831.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001154832.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001154833.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001154834.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001154835.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001154836.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001154837.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001154838.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001154839.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001154840.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001154841.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001154842.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001154843.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001154844.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001154845.1	KEGG: rfr:Rfer_3789 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein
YP_001154846.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001154847.1	one of the stabilizing components for the large ribosomal subunit
YP_001154848.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001154849.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001154850.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001154851.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001154852.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_001154853.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001154854.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001154855.1	binds 5S rRNA along with protein L5 and L25
YP_001154856.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001154857.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001154858.1	late assembly protein
YP_001154859.1	TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: rso:RSc2999 probable preprotein translocase secy (membrane subunit) transmembrane
YP_001154860.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001154861.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001154862.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001154863.1	PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: reu:Reut_A3155 ribosomal protein S4, bacterial and organelle form
YP_001154864.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001154865.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001154866.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: mca:MCA1040 periplasmic divalent cation tolerance protein
YP_001154867.1	PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: rme:Rmet_3288 cytochrome c biogenesis protein, transmembrane region
YP_001154868.1	PFAM: MOSC domain containing protein; KEGG: fal:FRAAL1642 hypothetical protein; MOSC domain
YP_001154869.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001154870.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001154871.1	KEGG: reh:H16_A3451 cytochrome c553
YP_001154872.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: reh:H16_A3443 diaminopimelate decarboxylase
YP_001154873.1	PFAM: Frataxin family protein; KEGG: bxe:Bxe_A0353 hypothetical protein
YP_001154874.1	PFAM: 3-dehydroquinate synthase; KEGG: reh:H16_A3434 3-dehydroquinate synthase
YP_001154875.1	PFAM: shikimate kinase; KEGG: bur:Bcep18194_A3489 shikimate kinase
YP_001154876.1	PFAM: type II and III secretion system protein; Secretin/TonB, short N-terminal domain; KEGG: net:Neut_1803 type IV pilus secretin PilQ
YP_001154878.1	KEGG: rme:Rmet_3274 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase
YP_001154879.1	PFAM: protein of unknown function DUF1568; KEGG: aav:Aave_1007 protein of unknown function DUF1568
YP_001154880.1	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: reh:H16_A3431 glutamate synthase [NADPH], glutamate synthase amidotransferase domain
YP_001154881.1	TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bte:BTH_I3013 glutamate synthase, small subunit
YP_001154882.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2962 probable ATP-binding ABC transporter protein
YP_001154883.1	PFAM: protein of unknown function DUF140; KEGG: reh:H16_A3426 ABC-type transporter, permease component involved in toluene tolerance
YP_001154884.1	PFAM: Mammalian cell entry related domain protein; KEGG: reu:Reut_A3120 mammalian cell entry related
YP_001154885.1	PFAM: VacJ family lipoprotein; KEGG: pna:Pnap_0688 VacJ family lipoprotein
YP_001154886.1	PFAM: toluene tolerance family protein; KEGG: reu:Reut_A3118 toluene tolerance
YP_001154887.1	KEGG: rme:Rmet_3254 sulfate transporter/antisigma-factor antagonist STAS
YP_001154888.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_3396 ABC transporter related
YP_001154889.1	PFAM: ABC-2 type transporter; KEGG: reh:H16_A3420 ABC-2-type transporter, permease component
YP_001154890.1	PFAM: BolA family protein; KEGG: reh:H16_A3419 predicted transcriptional regulator, BolA superfamily
YP_001154891.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001154892.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001154893.1	PFAM: histidinol dehydrogenase; KEGG: reu:Reut_A3111 histidinol dehydrogenase
YP_001154894.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001154895.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_001154896.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001154897.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001154898.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001154899.1	PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: eba:ebB39 phosphoribosyl-AMP cyclohydrolase
YP_001154900.1	PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: bxe:Bxe_A0406  phosphoribosyl-ATP pyrophosphohydrolase HisE
YP_001154901.1	PFAM: histidine triad (HIT) protein; KEGG: vei:Veis_0702 histidine triad (HIT) protein
YP_001154902.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_001154903.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: reu:Reut_A3099 twin-arginine translocation protein TatB
YP_001154904.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: bxe:Bxe_A0411 twin-arginine translocation protein, TatC
YP_001154905.1	PFAM: porin, Gram-negative type; KEGG: pna:Pnap_0650 porin, gram-negative type
YP_001154906.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1840 TPR repeat-containing protein
YP_001154907.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein
YP_001154908.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rme:Rmet_3233 peptidase S1 and S6, chymotrypsin/Hap
YP_001154909.1	TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ajs:Ajs_0788 large conductance mechanosensitive channel protein
YP_001154910.1	KEGG: ajs:Ajs_0789 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_001154911.1	PFAM: Cytochrome b/b6, N-terminal domain; KEGG: rso:RSc2928  cytochrome B subunit transmembrane protein
YP_001154912.1	PFAM: cytochrome c1; KEGG: reh:H16_A3396 ubiquinol-cytochrome c reductase, cytochrome c1
YP_001154913.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bam:Bamb_0362 glutathione S-transferase, N-terminal domain
YP_001154914.1	PFAM: Stringent starvation protein B; KEGG: rso:RSc2925  stringent starvation protein B
YP_001154915.1	KEGG: cph:Cpha266_1837 TPR domain protein
YP_001154916.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: azo:azo2850  sugar transport protein
YP_001154917.1	KEGG: pna:Pnap_3102 phasin family protein
YP_001154918.1	PFAM: protein of unknown function DUF195; KEGG: mpt:Mpe_B0614 hypothetical protein
YP_001154919.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: reh:H16_A3343 glutaredoxin-related protein
YP_001154920.1	TIGRFAM: modification methylase, HemK family; PFAM:  RNA methylase; methyltransferase small; KEGG: hch:HCH_01734 methylase of polypeptide chain release factors
YP_001154921.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001154922.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_001154923.1	PFAM: Uracil-DNA glycosylase superfamily; KEGG: reu:Reut_A3028 uracil-DNA glycosylase
YP_001154924.1	PFAM: PDZ/DHR/GLGF domain protein; peptidase M61 domain protein; KEGG: azo:azo2068 conserved hypothetical protein
YP_001154925.1	KEGG: reu:Reut_A3035 probable thiol:disulfide interchange protein
YP_001154926.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: reu:Reut_A3036 hypothetical protein
YP_001154927.1	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: bpm:BURPS1710b_3587 GTP-binding protein YchF
YP_001154928.1	KEGG: rme:Rmet_5343 hypothetical protein
YP_001154929.1	KEGG: rme:Rmet_5344 hypothetical protein
YP_001154930.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_001154931.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001154932.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: rso:RSc2882 probable panthranilate synthase component II (glutamine amido-transferase) protein
YP_001154933.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_001154934.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: bpm:BURPS1710b_3573 ribulose-phosphate 3-epimerase
YP_001154935.1	protein associated with Co2+ and Mg2+ efflux
YP_001154936.1	PFAM: MltA domain protein; 3D domain protein; KEGG: rme:Rmet_3173 MltA
YP_001154937.1	KEGG: rso:RSc2871  hippurate hydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_001154938.1	TIGRFAM: dethiobiotin synthase; KEGG: eba:ebA6011 cobyrinic acid a,c-diamide synthase:dethiobiotin synthase
YP_001154939.1	PFAM: aminotransferase, class I and II; KEGG: reh:H16_A0181 8-amino-7-oxononanoate synthase
YP_001154940.1	TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: eba:ebA6019 adenosylmethionine-8-amino-7-oxononanoate transaminase
YP_001154941.1	KEGG: rfr:Rfer_2292 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_001154942.1	KEGG: rso:RSc2854  ubiquinone biosynthesis protein
YP_001154943.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001154944.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rme:Rmet_3136 methyltransferase
YP_001154945.1	PFAM: cell division protein FtsL; KEGG: reh:H16_A3280 cell division protein FtsL
YP_001154946.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: reu:Reut_A2985 peptidoglycan glycosyltransferase
YP_001154947.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: reu:Reut_A2984 UDP-N-acetylmuramyl-tripeptide synthetase
YP_001154948.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: bps:BPSL3029 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino pimelate--D-alanyl-D-alanyl ligase
YP_001154949.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001154950.1	TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: reu:Reut_A2981 UDP-N-acetylmuramoylalanine-D-glutamate ligase
YP_001154951.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: reu:Reut_A2980 cell cycle protein
YP_001154952.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001154953.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001154954.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001154955.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rso:RSc2841  cell division transmembrane protein
YP_001154956.1	PFAM: cell division protein FtsA; KEGG: rso:RSc2840 probable cell division protein FtsA
YP_001154957.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001154958.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A0492  type 2 peroxiredoxin, AhpC/TSA family
YP_001154959.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001154961.1	TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: rme:Rmet_3118 preprotein translocase, SecA subunit
YP_001154962.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gfo:orf438 molybdenum-dependent oxidoreductase iron-sulfur binding subunit
YP_001154963.1	KEGG: sfu:Sfum_1730 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
YP_001154964.1	KEGG: reh:H16_A3263 N-acetylglutamate synthase; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ
YP_001154965.1	PFAM: protein of unknown function DUF815; KEGG: reh:H16_A3262 predicted ATPase, AAA+ superfamily
YP_001154966.1	PFAM: NUDIX hydrolase; KEGG: bxe:Bxe_A0498  mutator protein(7,8-dihydro-8-oxoguanine-triphosphatase), MutT
YP_001154967.1	PFAM: protein of unknown function DUF1342; KEGG: rso:RSc2829 hypothetical protein
YP_001154968.1	KEGG: bam:Bamb_0478 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase
YP_001154969.1	PFAM: peptidase A24A, prepilin type IV; KEGG: pfo:Pfl_4822 prepilin peptidase
YP_001154970.1	PFAM: type II secretion system protein; KEGG: rme:Rmet_3109 type II secretion system protein
YP_001154971.1	PFAM: type II secretion system protein E; KEGG: rme:Rmet_3108 type II secretion system protein E
YP_001154972.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rso:RSc2824 probable transmembrane protein
YP_001154973.1	TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: reh:H16_A0591 methylated-DNA [protein]-cysteine S-methyltransferase
YP_001154974.1	PFAM: Squalene/phytoene synthase; KEGG: neu:NE1958 squalene and phytoene synthase
YP_001154975.1	PFAM: Na+/solute symporter; KEGG: reh:H16_A0450 APC transporter, SSS family
YP_001154976.1	KEGG: pol:Bpro_2793 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein
YP_001154977.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rpe:RPE_1953 fumarylacetoacetate (FAA) hydrolase
YP_001154978.1	PFAM: Polyprenyl synthetase; KEGG: bxe:Bxe_A0506 octylprenyl-diphosphate synthase
YP_001154979.1	PFAM: ribosomal protein L21; KEGG: rso:RSc2822 probable 50S ribosomal subunit protein L21
YP_001154980.1	involved in the peptidyltransferase reaction during translation
YP_001154981.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001154982.1	KEGG: rme:Rmet_3103 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase
YP_001154983.1	KEGG: bpm:BURPS1710b_3520  lipoprotein
YP_001154984.1	hydrolyzes diadenosine polyphosphate
YP_001154985.1	TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: rme:Rmet_3100 prolyl-tRNA synthetase
YP_001154986.1	KEGG: bte:BTH_I1149 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_001154987.1	PFAM: cytochrome c assembly protein; KEGG: bxe:Bxe_A0517 cytochrome c assembly protein
YP_001154988.1	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: reh:H16_A3236 N-acetylmuramoyl-L-alanine amidase
YP_001154989.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001154990.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001154992.1	PFAM: PfkB domain protein; KEGG: reh:H16_A3176 carbohydrate kinase, PfkB family
YP_001154993.1	TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: bam:Bamb_0505 ribosomal protein L11 methyltransferase
YP_001154994.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rso:RSc2787 probable biotin carboxylase
YP_001154995.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: bml:BMA10299_A1281 acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_001154996.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001154997.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: reu:Reut_A2863  thioredoxin-related transmembrane protein
YP_001154998.1	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: bpm:BURPS1710b_3496 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
YP_001154999.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_3057 short-chain dehydrogenase/reductase SDR
YP_001155000.1	PFAM: ribonuclease II; KEGG: rme:Rmet_3056 ribonuclease II
YP_001155001.1	TIGRFAM: TonB family protein; KEGG: rso:RSc2778 hypothetical protein
YP_001155002.1	KEGG: bte:BTH_I1171 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein
YP_001155003.1	TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: rme:Rmet_3053 monofunctional biosynthetic peptidoglycan transglycosylase
YP_001155004.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001155005.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: reu:Reut_A2853 magnesium and cobalt transport protein CorA
YP_001155006.1	PFAM: CinA domain protein; KEGG: lpf:lpl1767 competence/damage-inducible protein CinA C-terminal domain
YP_001155007.1	PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A
YP_001155008.1	TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rso:RSc2768 thiamine monophosphate kinase
YP_001155009.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_001155010.1	KEGG: rso:RSc2765 hypothetical protein
YP_001155011.1	PFAM: protein of unknown function DUF558; KEGG: rso:RSc2763 hypothetical protein
YP_001155012.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: rso:RSc2750 transketolase
YP_001155013.1	KEGG: mpt:Mpe_A0260 glycerladehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_001155014.1	PFAM: ferric-uptake regulator; KEGG: rso:RSc2747 probable ferric uptake transcriptional repressor transcription regulator protein
YP_001155015.1	PFAM: SmpA/OmlA domain protein; KEGG: reh:H16_A3142 lipoprotein
YP_001155016.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001155017.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001155018.1	KEGG: reh:H16_A3138 rare lipoprotein B precursor
YP_001155019.1	TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: rso:RSc2742 probable DNA polymerase III (delta subunit) protein
YP_001155020.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_001155021.1	PFAM: conserved hypothetical protein 701; KEGG: bbr:BB3690  conserved inner membrane protein
YP_001155022.1	PFAM:  RNA methylase; THUMP domain protein; KEGG: bxe:Bxe_A4003 hypothetical protein
YP_001155023.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_0668 rubredoxin-type Fe(Cys)4 protein
YP_001155024.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_001155025.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_001155026.1	PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: bxe:Bxe_B2844 deoxyribodipyrimidine photolyase
YP_001155027.1	PFAM: protein of unknown function DUF218; KEGG: nwi:Nwi_1708 protein of unknown function DUF218
YP_001155028.1	PFAM: protein of unknown function DUF179; KEGG: rso:RSc0675 hypothetical protein
YP_001155029.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001155030.1	PFAM: phosphoribosyltransferase; KEGG: bte:BTH_I1464 pyrimidine operon regulatory protein PyrR
YP_001155031.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001155032.1	KEGG: gsu:GSU2251 hypothetical protein
YP_001155034.1	PFAM: glycosyl transferase, family 25; KEGG: hhe:HH0323 glycosyl transferase, family 25
YP_001155036.1	KEGG: hpa:HPAG1_0636 alpha 1,3-fucosyltransferase
YP_001155038.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cvi:CV4010 dTDPglucose 4,6-dehydratase
YP_001155039.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; KEGG: reh:H16_A1850 dTDP-4-dehydrorhamnose reductase
YP_001155040.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: reu:Reut_A0714 glucose-1-phosphate thymidylyltransferase, long form
YP_001155041.1	KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_001155042.1	TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: rme:Rmet_2715 lipopolysaccharide heptosyltransferase I
YP_001155043.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: reh:H16_A2879 cation/multidrug efflux system outer membrane porin
YP_001155044.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_001155045.1	KEGG: azo:azo2606 conserved hypothetical membrane protein
YP_001155046.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: xft:PD1543 dTDP-glucose 4-6-dehydratase
YP_001155047.1	KEGG: bxe:Bxe_A0859 conserved hypothetical protein 91; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM:  methyltransferase
YP_001155048.1	KEGG: mpt:Mpe_A2324 succinate-semialdehyde dehydrogenase (NAD(P)+); TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase
YP_001155049.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: mfa:Mfla_0493 NusB antitermination factor
YP_001155050.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001155051.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: reu:Reut_A0770 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_001155055.1	KEGG: rme:Rmet_2688 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein
YP_001155056.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001155057.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: reh:H16_A2826 predicted PP-loop superfamily ATPase
YP_001155058.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: reh:H16_A2827 hypothetical membrane associated protein
YP_001155059.1	PFAM: OmpA/MotB domain protein; KEGG: reh:H16_A2828 outer membrane protein or related peptidoglycan-associated (LipO)protein
YP_001155060.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_001155061.1	TIGRFAM: TonB family protein; TonB, C-terminal domain; KEGG: reh:H16_A1671 hypothetical membrane associated protein
YP_001155062.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: bxe:Bxe_A3918 biopolymer transport protein ExbD/TolR
YP_001155063.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: bam:Bamb_0680 MotA/TolQ/ExbB proton channel
YP_001155064.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001155065.1	PFAM: ATP-cone domain protein; KEGG: rme:Rmet_2681 protein of unknown function DUF193
YP_001155066.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001155067.1	KEGG: reu:Reut_A0591 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_001155068.1	PFAM: protein of unknown function DUF343; KEGG: ppr:PBPRA2383 hypothetical protein
YP_001155069.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_001155070.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aav:Aave_2565 biopolymer transport protein ExbD/TolR
YP_001155071.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: reh:H16_A0608 biopolymer transport channel protein
YP_001155072.1	KEGG: bur:Bcep18194_A5875 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type
YP_001155073.1	KEGG: pol:Bpro_3563 hypothetical protein
YP_001155074.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001155075.1	PFAM: protein of unknown function DUF520; KEGG: bxe:Bxe_A0754 hypothetical protein
YP_001155076.1	KEGG: rpc:RPC_2134 hypothetical protein
YP_001155077.1	TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rso:RSc2544 probable integrase/recombinase
YP_001155078.1	PFAM: protein of unknown function DUF205; KEGG: reu:Reut_A0575 hypothetical protein
YP_001155079.1	KEGG: ajs:Ajs_2347 membrane protein-like protein
YP_001155080.1	PFAM: GTP cyclohydrolase I; KEGG: mpt:Mpe_A1074 GTP cyclohydrolase I
YP_001155081.1	PFAM: High potential iron-sulfur protein; KEGG: rfr:Rfer_3162 twin-arginine translocation pathway signal
YP_001155082.1	KEGG: psb:Psyr_4859 ISPsy8, transposase OrfA
YP_001155083.1	PFAM: Integrase, catalytic region; KEGG: bca:BCE_A0056 IS3-family transposase, OrfB
YP_001155084.1	PFAM: HPP family protein+B94; KEGG: pol:Bpro_0211 CBS domain containing membrane protein
YP_001155086.1	KEGG: mpt:Mpe_A0629 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein
YP_001155087.1	TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: stm:STM2109 GDP-D-mannose dehydratase
YP_001155088.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: rfr:Rfer_1235 NAD-dependent epimerase/dehydratase
YP_001155091.1	PFAM: glycosyl transferase, family 2; KEGG: plt:Plut_1853 glycosyltransferase involved in cell wall biogenesis-like
YP_001155092.1	KEGG: tel:tlr2386 hemolytic protein hlpA homolog
YP_001155093.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: syn:slr1118 UDP-N-acetyl-D-mannosaminuronic acid transferase
YP_001155094.1	PFAM: glycosyl transferase, family 9; KEGG: sus:Acid_2356 glycosyl transferase, family 9
YP_001155095.1	PFAM: sugar transferase; KEGG: tcx:Tcr_1675 undecaprenyl-phosphate galactosephosphotransferase
YP_001155096.1	PFAM: polysaccharide biosynthesis protein; KEGG: ecs:ECs2842 O antigen flippase
YP_001155097.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ecs:ECs2841 perosamine synthetase
YP_001155098.1	PFAM: glycosyl transferase, group 1; KEGG: ecs:ECs2840  glycosyl transferase
YP_001155099.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: reu:Reut_A1128 transferase hexapeptide repeat
YP_001155101.1	PFAM: glycosyl transferase, family 4; KEGG: rso:RSc0689  undecaprenyl phosphate N-acetylglucosaminyltransferase transmembrane protein
YP_001155102.1	PFAM: glycosyl transferase, family 2; KEGG: pfl:PFL_5496 glycosyl transferase, group 2 family protein
YP_001155103.1	PFAM: ABC-2 type transporter; KEGG: pol:Bpro_4002 ABC-2
YP_001155104.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmv:BMASAVP1_A0928  lipopolysaccharide ABC transporter, ATP-binding protein
YP_001155105.1	PFAM: Methyltransferase type 11; KEGG: xom:XOO_0728 hypothetical protein
YP_001155106.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC0309 methyltransferase
YP_001155108.1	PFAM: Phytanoyl-CoA dioxygenase; KEGG: xac:XAC3597 hypothetical protein
YP_001155109.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: dar:Daro_1706 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase
YP_001155110.1	PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aav:Aave_0059 amine oxidase
YP_001155111.1	KEGG: rso:RSc0167 hypothetical protein
YP_001155112.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1708 short-chain dehydrogenase/reductase SDR
YP_001155113.1	PFAM: FAD linked oxidase domain protein; KEGG: dar:Daro_1709 FAD linked oxidase, N-terminal
YP_001155114.1	catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate
YP_001155115.1	PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: maq:Maqu_1644 acid phosphatase/vanadium-dependent haloperoxidase related
YP_001155118.1	PFAM: adenylylsulfate kinase; KEGG: net:Neut_0164 sulfate adenylyltransferase., adenylyl-sulfate kinase
YP_001155119.1	PFAM: glycosyl transferase, family 2; Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: gvi:gll2778 hypothetical protein
YP_001155121.1	PFAM: acyltransferase 3; KEGG: xfa:XF0778 O-antigen acetylase
YP_001155123.1	PFAM: sodium/calcium exchanger membrane region; KEGG: mpt:Mpe_A0997 Ca2+/H+ antiporter
YP_001155124.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: reu:Reut_A2686 cobalamin (vitamin B12) biosynthesis CbiX protein
YP_001155125.1	KEGG: yps:YPTB1722 hypothetical protein
YP_001155126.1	KEGG: yps:YPTB1721 hypothetical protein
YP_001155127.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_001155128.1	PFAM: Uncharacterised conserved protein UCP030820; KEGG: bte:BTH_I0815 bacterial protein of unknown function (DUF934) superfamily
YP_001155129.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bxe:Bxe_A3664  sulfite reductase
YP_001155130.1	KEGG: rfr:Rfer_2813  transcriptional regulator, XRE family
YP_001155131.1	KEGG: rfr:Rfer_2812 hypothetical protein
YP_001155132.1	TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: ana:alr9029  death on curing protein
YP_001155134.1	KEGG: sus:Acid_4082 hypothetical protein
YP_001155135.1	PFAM: acyltransferase 3; KEGG: dar:Daro_0178 acyltransferase 3
YP_001155136.1	PFAM: protein of unknown function DUF615; KEGG: bam:Bamb_0956 protein of unknown function DUF615
YP_001155137.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rso:RSc3345  choline dehydrogenase lipoprotein oxidoreductase
YP_001155138.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: ccr:CC3090 integral membrane protein
YP_001155139.1	PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein
YP_001155140.1	PFAM: inner-membrane translocator; KEGG: bxe:Bxe_A3707 ABC branched chain amino acid family transporter, inner membrane subunit
YP_001155141.1	PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_3519 ABC transporter related
YP_001155142.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_3518 ABC transporter related
YP_001155144.1	PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN0009 hypothetical protein
YP_001155145.1	KEGG: gbe:GbCGDNIH1_1686 hypothetical secreted protein
YP_001155146.1	KEGG: azo:azo3861 conserved hypothetical protein
YP_001155147.1	PFAM: DNA/RNA non-specific endonuclease; KEGG: rme:Rmet_4634 DNA/RNA non-specific endonuclease
YP_001155148.1	PFAM: Lytic transglycosylase, catalytic; KEGG: reh:H16_A2858 hypothetical membrane associated protein
YP_001155149.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: mfa:Mfla_0379 peptidylprolyl isomerase
YP_001155150.1	KEGG: reh:H16_B1931 isocitrate dehydrogenase [NADP]; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type
YP_001155151.1	PFAM: BLUF domain protein; KEGG: tel:tll0078 hypothetical protein
YP_001155152.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_001155153.1	PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: pna:Pnap_1457 lipocalin family protein
YP_001155154.1	PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: mpt:Mpe_A2516 vinylacetyl-CoA delta-isomerase
YP_001155155.1	PFAM: regulatory protein, TetR; KEGG: mpt:Mpe_A2515  TetR-family transcriptional regulator
YP_001155156.1	PFAM: isochorismatase hydrolase; KEGG: mpt:Mpe_A2514 hypothetical protein
YP_001155157.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc0730 probable oxidoreductase
YP_001155158.1	KEGG: ajs:Ajs_1755 hypothetical protein
YP_001155159.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rso:RSc0674 probable ribosomal small subunit pseudouridine synthase A protein
YP_001155160.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: syn:ssl2296 pterin-4a-carbinolamine dehydratase
YP_001155162.1	PFAM: protein of unknown function DUF159; KEGG: rfr:Rfer_4344 protein of unknown function DUF159
YP_001155163.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: neu:NE1418 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_001155164.1	PFAM: dihydrofolate reductase region; KEGG: reh:H16_A2704 dihydrofolate reductase
YP_001155165.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_001155166.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2462 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001155167.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bxe:Bxe_A1051  ferredoxin
YP_001155168.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001155169.1	KEGG: reu:Reut_A2279 hypothetical protein
YP_001155170.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rso:RSc1037 probable molybdopterin biosynthesis MoeA protein
YP_001155171.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: bbr:BB2115 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_001155172.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_001155173.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rso:RSc1040 probable ribonuclease E (RNase E) protein
YP_001155174.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: reh:H16_A2578 pseudouridylate synthase, 23S RNA-specific
YP_001155175.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rso:RSc1042  phosphoglycolate phosphatase
YP_001155176.1	PFAM: peptidase S49; KEGG: rme:Rmet_2436 peptidase S49
YP_001155177.1	KEGG: reu:Reut_A2270 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase
YP_001155178.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: aav:Aave_1179 maf protein
YP_001155179.1	PFAM: protein of unknown function DUF177; KEGG: reu:Reut_A2268 protein of unknown function DUF177
YP_001155180.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001155181.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001155182.1	KEGG: bch:Bcen2424_1121 3-oxoacyl-(acyl-carrier-protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_001155183.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: reu:Reut_A2264 malonyl CoA-acyl carrier protein transacylase
YP_001155184.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc1052 3-ketoacyl-(acyl-carrier-protein) reductase
YP_001155185.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001155186.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001155187.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: reu:Reut_A2256 peptidase S1C, Do
YP_001155188.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001155189.1	KEGG: rme:Rmet_2420 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B
YP_001155190.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001155191.1	TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: rme:Rmet_2417 GTP-binding protein Era
YP_001155192.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_001155193.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_001155194.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_001155195.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: reu:Reut_A2247 beta-hexosaminidase
YP_001155196.1	PFAM: carbonic anhydrase; KEGG: reh:H16_B2403 periplasmic alpha-carbonic anhydrase
YP_001155197.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001155198.1	KEGG: pfl:PFL_4265 hypothetical protein
YP_001155199.1	TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC, C subunit domain protein; excinuclease ABC, C subunit domain protein; UvrB/UvrC protein; KEGG: rme:Rmet_2410 excinuclease ABC, C subunit
YP_001155200.1	KEGG: reh:H16_A2546 CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_001155201.1	KEGG: mag:amb4330 hypothetical protein
YP_001155202.1	KEGG: pol:Bpro_2954 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein
YP_001155203.1	PFAM: Asparaginase/glutaminase; KEGG: reu:Reut_A2007 L-asparaginase, type II
YP_001155204.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001155205.1	KEGG: bxe:Bxe_A2455  primosomal replication protein N, PriB
YP_001155206.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001155207.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001155208.1	PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: pol:Bpro_3033 DnaB-like helicase-like
YP_001155209.1	KEGG: bja:bsl4187 hypothetical protein
YP_001155210.1	PFAM: MscS Mechanosensitive ion channel; KEGG: rso:RSc2662 probable transmembrane protein
YP_001155211.1	PFAM: NLP/P60 protein; KEGG: bxe:Bxe_A2393  transmembrane lipoprotein
YP_001155212.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: rme:Rmet_1970 PhoH-like protein
YP_001155213.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rso:RSc1317 probable bacterioferritin comigratory oxidoreductase
YP_001155214.1	PFAM: polysaccharide deacetylase; KEGG: bam:Bamb_1801 polysaccharide deacetylase
YP_001155215.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: bur:Bcep18194_A5163 hypothetical protein
YP_001155216.1	PFAM: formyl transferase domain protein; KEGG: rso:RSc1320 methionyl-tRNA formyltransferase
YP_001155217.1	PFAM: glycosyl transferase, family 2; KEGG: rso:RSc1321  polymixin resistance glycosyltransferase transmembrane protein
YP_001155218.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rso:RSc1322  aminotransferase
YP_001155219.1	PFAM: glycosyl transferase, family 39; KEGG: bxe:Bxe_A2384  transmembrane protein
YP_001155220.1	PFAM: protein of unknown function DUF498; KEGG: reh:H16_A2268 hypothetical protein
YP_001155221.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_001155222.1	PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: aav:Aave_1238 homoserine dehydrogenase
YP_001155223.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001155224.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: reu:Reut_A1991 molybdopterin binding domain
YP_001155225.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: bur:Bcep18194_A5152 molybdopterin converting factor, subunit 1
YP_001155226.1	PFAM: molybdopterin biosynthesis MoaE; KEGG: dar:Daro_2729 molybdopterin biosynthesis MoaE
YP_001155227.1	PFAM: Carboxylesterase, type B; KEGG: nar:Saro_1730 carboxylesterase, type B
YP_001155228.1	PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4329 major facilitator superfamily MFS_1
YP_001155229.1	KEGG: bxe:Bxe_B1050 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_001155230.1	PFAM: Excinuclease ABC, C subunit domain protein; KEGG: xac:XAC3202  endonuclease
YP_001155231.1	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: rme:Rmet_1959 ATPase AAA-2
YP_001155232.1	KEGG: mxa:MXAN_6813 hypothetical protein
YP_001155233.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_4169 uncharacterized protein UPF0065
YP_001155234.1	PFAM: major facilitator superfamily MFS_1; KEGG: mag:amb3967 permease of the major facilitator superfamily
YP_001155235.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: reh:H16_A2321  heavy metal transporting P-type ATPase
YP_001155236.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type
YP_001155237.1	CcoN; FixN
YP_001155238.1	CcoO; FixO
YP_001155239.1	KEGG: bbr:BB3327 cytochrome C oxidase subunit
YP_001155240.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: rso:RSc1279 probable cytochrome C oxidase (subunit III) transmembrane protein
YP_001155241.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rso:RSc1280 probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein
YP_001155242.1	KEGG: bpe:BP2174  lipoprotein
YP_001155243.1	KEGG: rso:RSc1282 probable transmembrane protein
YP_001155244.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rso:RSc1283  fumarate and nitrate reduction regulatory transcription regulator protein
YP_001155245.1	KEGG: reu:Reut_A2033 probable transmembrane protein
YP_001155246.1	KEGG: mpt:Mpe_A3561 hypothetical protein
YP_001155247.1	PFAM: UspA domain protein; KEGG: xcb:XC_4113 hypothetical protein
YP_001155248.1	PFAM: peptidase M23B; KEGG: net:Neut_1544 peptidase M23B
YP_001155249.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: bbr:BB2438 probable 3-hydroxybutyryl-CoA dehydrogenase
YP_001155250.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: bbr:BB2683  racemase
YP_001155251.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bld:BLi02556 hypothetical protein
YP_001155252.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: afu:AF0635 immunogenic protein
YP_001155253.1	PFAM: dihydrodipicolinate synthetase; KEGG: pol:Bpro_3814 dihydrodipicolinate synthetase
YP_001155254.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3811 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001155255.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reh:H16_B1652 3-hydroxyacyl-CoA dehydrogenase
YP_001155256.1	PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: mfa:Mfla_2622 major facilitator superfamily MFS_1
YP_001155257.1	PFAM: cytochrome B561; KEGG: azo:azo0089 conserved hypothetical hydrogenase cytochrome b-type subunit
YP_001155258.1	PFAM: cytochrome c, class II; KEGG: pna:Pnap_0216 cytochrome c, class II
YP_001155259.1	PFAM: peptidase M50; KEGG: aav:Aave_3710 peptidase M50
YP_001155260.1	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: eca:ECA0327 hypothetical protein
YP_001155261.1	TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: bte:BTH_I1520 CrcB protein
YP_001155262.1	PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP4256 hypothetical protein
YP_001155263.1	PFAM: Chromate transporter; KEGG: dar:Daro_3385 chromate transporter
YP_001155264.1	PFAM: Chromate transporter; KEGG: dar:Daro_3386 chromate transporter
YP_001155265.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_1268 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001155266.1	PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_1269 MmgE/PrpD
YP_001155267.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1270 uncharacterized protein UPF0065
YP_001155268.1	PFAM: Rhodanese domain protein; KEGG: reh:H16_A0899 predicted sulfurtransferase
YP_001155269.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_1056 uncharacterized protein UPF0065
YP_001155270.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: bxe:Bxe_C0965 hypothetical protein
YP_001155271.1	PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: maq:Maqu_3553 pirin domain protein domain protein
YP_001155272.1	PFAM: methyltransferase small; KEGG: bte:BTH_I2943 hypothetical protein
YP_001155273.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein
YP_001155274.1	KEGG: reh:H16_A0786 predicted phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_001155275.1	KEGG: bbr:BB3475 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12
YP_001155276.1	PFAM: OmpA/MotB domain protein; KEGG: ajs:Ajs_2463 OmpA/MotB domain protein
YP_001155277.1	negatively supercoils closed circular double-stranded DNA
YP_001155278.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_001155279.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: bxe:Bxe_A0977 bifunctional, chorismate mutase/prephenate dehydratase
YP_001155280.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_001155281.1	PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: reu:Reut_A2573 prephenate dehydrogenase
YP_001155282.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_001155283.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001155284.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001155285.1	TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: rme:Rmet_0723 integration host factor, beta subunit
YP_001155286.1	SMART: Tetratricopeptide domain protein; KEGG: bam:Bamb_0926 tetratricopeptide domain protein
YP_001155287.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: reu:Reut_A2565 UDP-glucose 6-dehydrogenase
YP_001155288.1	TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: reu:Reut_A2564 RfaE bifunctional protein, domain I
YP_001155289.1	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: reh:H16_A0804 ADP-D-beta-D-heptose 6-epimerase
YP_001155290.1	KEGG: dar:Daro_4102 hypothetical protein
YP_001155291.1	PFAM: helix-hairpin-helix motif; KEGG: bam:Bamb_1783 hypothetical protein
YP_001155292.1	TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: reh:H16_A0807 cysteine synthase
YP_001155293.1	TIGRFAM: lytic murein transglycosylase B; KEGG: rme:Rmet_0732 lytic murein transglycosylase B
YP_001155294.1	PFAM: histone deacetylase superfamily; KEGG: rme:Rmet_0733 histone deacetylase superfamily
YP_001155295.1	PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3136 AMP-dependent synthetase and ligase
YP_001155296.1	PFAM: electron transfer flavoprotein beta-subunit; KEGG: reh:H16_A0814 electron transfer flavoprotein beta-subunit
YP_001155297.1	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: ajs:Ajs_2809 electron transfer flavoprotein, alpha subunit
YP_001155298.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pna:Pnap_3285 acyl-CoA dehydrogenase domain protein
YP_001155299.1	KEGG: rso:RSc0929 probable transmembrane protein
YP_001155300.1	PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: rme:Rmet_2713 protein of unknown function DUF306, MetA and HslJ
YP_001155301.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001155302.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: reu:Reut_A2539 16S rRNA processing protein RimM
YP_001155303.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001155304.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001155305.1	PFAM: NUDIX hydrolase; KEGG: rme:Rmet_0752 NUDIX hydrolase
YP_001155306.1	PFAM: cobalamin biosynthesis protein CbiB; KEGG: rme:Rmet_2578 cobalamin biosynthesis protein CbiB
YP_001155307.1	TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: reu:Reut_A0905 GTPase EngC
YP_001155308.1	PFAM: peptidase M48, Ste24p; KEGG: bps:BPSL2482 subfamily M48A unassigned peptidase
YP_001155309.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_001155310.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: bur:Bcep18194_A4193 molybdopterin binding protein
YP_001155311.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rso:RSc0945  pmba protein (tldE protein)
YP_001155312.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_3543 twin-arginine translocation pathway signal
YP_001155313.1	KEGG: sme:SMa1115  manganese transport protein
YP_001155314.1	PFAM: protein of unknown function DUF81; KEGG: pol:Bpro_1234 protein of unknown function DUF81
YP_001155315.1	PFAM: phospholipase/Carboxylesterase; KEGG: rfr:Rfer_1674 carboxylesterase
YP_001155318.1	PFAM: protein of unknown function DUF485; KEGG: pna:Pnap_0484 protein of unknown function DUF485
YP_001155319.1	TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: bur:Bcep18194_B1980 Na+/solute symporter
YP_001155320.1	3'-5' exonuclease of DNA polymerase III
YP_001155321.1	PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: pna:Pnap_0480 cyclic nucleotide-binding protein
YP_001155322.1	KEGG: chu:CHU_0221 hypothetical protein
YP_001155323.1	PFAM: HpcH/HpaI aldolase; KEGG: ade:Adeh_0181 citryl-CoA lyase
YP_001155324.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pna:Pnap_0056 GCN5-related N-acetyltransferase
YP_001155325.1	PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: mfa:Mfla_0507 glutathione S-transferase-like protein
YP_001155326.1	KEGG: cps:CPS_2500  lipoprotein
YP_001155327.1	KEGG: rha:RHA1_ro06278 possible protein-tyrosine phosphatase
YP_001155329.1	KEGG: rfr:Rfer_0914  cytochrome c1 signal peptide protein
YP_001155330.1	PFAM: cytochrome c, class I; KEGG: rfr:Rfer_0913 cytochrome c, class I
YP_001155331.1	KEGG: bte:BTH_I2045 phytochelatin synthase
YP_001155332.1	KEGG: mlo:mll4938 hypothetical protein
YP_001155333.1	KEGG: mbb:BCG_3103  hydroxylaminobenzene mutase hab
YP_001155334.1	PFAM: secretory lipase; KEGG: mes:Meso_1425 secretory lipase
YP_001155335.1	PFAM: protein of unknown function DUF336; KEGG: ppu:PP_3193 hypothetical protein
YP_001155336.1	PFAM: Cl- channel, voltage-gated family protein; KEGG: mkm:Mkms_4266 Cl-channel, voltage-gated family protein
YP_001155337.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: pae:PA5297 pyruvate dehydrogenase (cytochrome)
YP_001155339.1	PFAM: cytochrome c, class I; KEGG: bam:Bamb_2722 cytochrome c, class I
YP_001155340.1	PFAM: DoxX family protein; KEGG: pen:PSEEN2275 hypothetical protein
YP_001155343.1	KEGG: rle:pRL110227  transmembrane protein
YP_001155347.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pna:Pnap_2688 integral membrane sensor hybrid histidine kinase
YP_001155348.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pat:Patl_0522 two component transcriptional regulator, LuxR family
YP_001155350.1	KEGG: rso:RSp1129  arsenical resistance operon repressor transcription regulator protein
YP_001155351.1	KEGG: eba:ebB231 hypothetical protein
YP_001155352.1	KEGG: sco:SCO6331 hypothetical protein
YP_001155353.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rpe:RPE_3904  anti-sigma regulatory factor, serine/threonine protein kinase
YP_001155354.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: rfr:Rfer_0496 cation diffusion facilitator family transporter
YP_001155355.1	PFAM: beta-lactamase domain protein; KEGG: reh:H16_A1980 hydroxyacylglutathione hydrolase
YP_001155356.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mca:MCA0486 hypothetical protein
YP_001155357.1	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: sus:Acid_4064 multiple antibiotic resistance (MarC)-related protein
YP_001155358.1	PFAM: Choloylglycine hydrolase; KEGG: stt:t1459  secreted hydrolase
YP_001155359.1	KEGG: gbe:GbCGDNIH1_1333 hypothetical protein
YP_001155360.1	PFAM: Amidohydrolase 3; KEGG: mul:MUL_0894 metal-dependent hydrolase
YP_001155361.1	KEGG: rle:pRL110217 hypothetical protein
YP_001155364.1	KEGG: dar:Daro_1872 hypothetical protein
YP_001155365.1	KEGG: azo:azo0274 conserved hypothetical secreted protein
YP_001155366.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: azo:azo0273  ECF-family RNA polymerase sigma factor
YP_001155368.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: dar:Daro_1388 cold-shock protein, DNA-binding
YP_001155369.1	TIGRFAM: translation initiation factor IF-1; PFAM: S1, IF1 family protein; KEGG: pna:Pnap_0981 translation initiation factor IF-1
YP_001155373.1	KEGG: eba:ebA2161 hypothetical protein
YP_001155374.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mta:Moth_1954 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001155375.1	transports degraded pectin products into the bacterial cell
YP_001155376.1	KEGG: pol:Bpro_4563 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding
YP_001155377.1	PFAM: cell wall hydrolase/autolysin; KEGG: reh:H16_A0597 N-acetylmuramoyl-L-alanine amidase
YP_001155378.1	PFAM: protein of unknown function UPF0079; KEGG: cvi:CV3821 hypothetical protein
YP_001155379.1	TIGRFAM:  iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: rme:Rmet_0524 4Fe-4S cluster binding
YP_001155380.1	PFAM: AzlC family protein; KEGG: pub:SAR11_1356 hypothetical protein
YP_001155381.1	KEGG: atc:AGR_C_2526 hypothetical protein
YP_001155382.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_2755 D-lactate dehydrogenase (cytochrome)
YP_001155383.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2754 transcriptional regulator, GntR family
YP_001155384.1	PFAM: aminotransferase, class V; KEGG: reh:H16_B1170 aminotransferase class-V
YP_001155385.1	PFAM: protein of unknown function DUF336; KEGG: rso:RSc1967 probable GlcG protein
YP_001155386.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: reh:H16_A2717 ATP-dependent helicase, superfamily II DNA and RNA helicase
YP_001155387.1	PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: mpt:Mpe_A2900 glutamate--tRNA ligase
YP_001155388.1	KEGG: reu:Reut_A2534 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_001155389.1	PFAM: glycosyl transferase, family 9; KEGG: bte:BTH_I0990 lipopolysaccharide core biosynthesis heptosyltransferase
YP_001155390.1	PFAM: glycosyl transferase, family 2; KEGG: pna:Pnap_2051 glycosyl transferase, family 2
YP_001155391.1	PFAM: glycosyl transferase, family 2; KEGG: rme:Rmet_0756 glycosyl transferase, family 2
YP_001155392.1	KEGG: rme:Rmet_0757 lipid A export ATP-binding/permease MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_001155393.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: reu:Reut_A2529 ribonuclease E and G
YP_001155394.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bpm:BURPS1710b_1378 septum formation protein Maf
YP_001155395.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001155396.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: rme:Rmet_0781 iojap-related protein
YP_001155397.1	KEGG: reu:Reut_A2525 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase
YP_001155398.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_001155399.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001155400.1	PFAM: protein of unknown function DUF28; KEGG: reh:H16_A0916 hypothetical protein
YP_001155401.1	KEGG: bxe:Bxe_A0057 hypothetical protein
YP_001155402.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_2818 transcriptional regulator, LysR family
YP_001155403.1	PFAM: permease YjgP/YjgQ family protein; KEGG: bps:BPSL0963  permease
YP_001155404.1	PFAM: permease YjgP/YjgQ family protein; KEGG: rme:Rmet_2808 permease YjgP/YjgQ
YP_001155405.1	PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: reu:Reut_A2683 leucyl aminopeptidase
YP_001155406.1	PFAM: DNA polymerase III chi subunit, HolC; KEGG: rso:RSc2414 probable DNA polymerase III (chi subunit) protein
YP_001155407.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001155408.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pna:Pnap_0955 transcriptional regulator, LysR family
YP_001155409.1	PFAM: Malonyl-CoA decarboxylase; KEGG: sme:SMa0151 hypothetical protein
YP_001155410.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpa:RPA2543 TrapT family, DctP subunit, C4-dicarboxylate periplasmic binding protein
YP_001155411.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rpa:RPA2542 possible TrapT family, DctQ subunit, C4-dicarboxylate transport
YP_001155412.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_2527 TRAP dicarboxylate transporter-DctM subunit
YP_001155413.1	catalyzes the formation of malonyl-CoA from malonate and CoA
YP_001155414.1	PFAM: protein of unknown function DUF81; KEGG: reh:H16_A2976 predicted permease
YP_001155415.1	KEGG: reu:Reut_A0652 protein of unknown function DUF710
YP_001155416.1	KEGG: reh:H16_A2973 hypothetical protein
YP_001155417.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: dar:Daro_4030 TonB-dependent receptor:lipocalin
YP_001155418.1	PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_2799 cyclic nucleotide-binding domain (cNMP-BD) protein
YP_001155419.1	catalyzes the formation of formyl-CoA from oxalyl-CoA
YP_001155420.1	catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA
YP_001155421.1	KEGG: reu:Reut_B4662 PAS; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001155422.1	catalyzes the formation of oxalyl-CoA from oxalate and Formyl-CoA
YP_001155423.1	PFAM: formyl transferase domain protein; KEGG: cfa:474534 similar to aldehyde dehydrogenase 1 family, member L2
YP_001155425.1	PFAM: Choloylglycine hydrolase; KEGG: stt:t1459  secreted hydrolase
YP_001155426.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001155427.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: rme:Rmet_2773 chromosome segregation and condensation protein ScpA
YP_001155428.1	KEGG: reu:Reut_A0670 hypothetical protein
YP_001155429.1	TIGRFAM: methionyl-tRNA synthetase; PFAM: methionyl-tRNA synthetase, class Ia; KEGG: rso:RSc2381 probable methionyl-tRNA synthetase
YP_001155430.1	PFAM: formate dehydrogenase, subunit FdhD; KEGG: reh:H16_A2932 protein required for formate dehydrogenase activity
YP_001155431.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_001155432.1	PFAM: Ion transport 2 domain protein, ; K+ channel, inward rectifier, conserved region 2 domain protein; KEGG: mag:amb1660 ATP-sensitive inward rectifier potassium channel 10
YP_001155433.1	PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: mfa:Mfla_1059 lysine decarboxylase
YP_001155434.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001155435.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rme:Rmet_2753 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_001155436.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: reu:Reut_A0694 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001155437.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001155438.1	KEGG: bur:Bcep18194_A5752 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase
YP_001155439.1	PFAM: Uroporphyrinogen III synthase HEM4; KEGG: bxe:Bxe_A3410 uroporphyrinogen III synthase HEM4
YP_001155440.1	PFAM: Chorismate lyase; KEGG: azo:azo0478  chorismate:pyruvate lyase
YP_001155441.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mpt:Mpe_A2918  ATP-dependent RNA helicase
YP_001155442.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rme:Rmet_2194 lysine exporter protein (LysE/YggA)
YP_001155443.1	PFAM: aldehyde dehydrogenase; KEGG: pna:Pnap_2218 aldehyde dehydrogenase
YP_001155444.1	TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: mpt:Mpe_A2934 methionine-S-oxide reductase
YP_001155445.1	KEGG: reh:H16_A2802 pyridoxamine-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_001155446.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rme:Rmet_2639 UBA/ThiF-type NAD/FAD binding fold
YP_001155447.1	PFAM: amino acid permease-associated region; KEGG: ppu:PP_1059 amino acid permease
YP_001155448.1	TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; KEGG: rfr:Rfer_4054 alanine dehydrogenase
YP_001155449.1	PFAM: protein of unknown function UPF0016; KEGG: rso:RSc2100 probable transmembrane protein
YP_001155450.1	TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: reu:Reut_A2443 peptidase M, neutral zinc metallopeptidases, zinc-binding site
YP_001155451.1	PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: aav:Aave_1843 inositol phosphatase/fructose-1,6-bisphosphatase
YP_001155452.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_001155453.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_001155454.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_0705 ABC transporter-related protein
YP_001155455.1	KEGG: reh:H16_A0777 hypothetical protein
YP_001155456.1	PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4656 major facilitator superfamily MFS_1
YP_001155457.1	KEGG: azo:azo2157 conserved hypothetical secreted protein
YP_001155458.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: mxa:MXAN_6716  TonB dependent receptor
YP_001155459.1	KEGG: nwi:Nwi_2903 glycosyl hydrolase, BNR repeat
YP_001155460.1	PFAM: Redoxin domain protein; KEGG: nwi:Nwi_2904 possible signal peptide protein
YP_001155461.1	PFAM: protein of unknown function DUF461; KEGG: pde:Pden_4444 protein of unknown function DUF461
YP_001155462.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001155463.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: sfu:Sfum_0582 two component transcriptional regulator, LuxR family
YP_001155465.1	PFAM: nitrogen regulatory protein P-II; KEGG: mfa:Mfla_1885 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_001155466.1	KEGG: rso:RSc2347 NAD(+) synthase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase
YP_001155467.1	PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase
YP_001155468.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_001155469.1	KEGG: eba:ebD16 hypothetical protein
YP_001155470.1	PFAM: PilT protein domain protein; SMART: Nucleotide binding protein, PINc; KEGG: cch:Cag_1325 nucleic acid-binding protein,contains PIN domain
YP_001155471.1	KEGG: bpm:BURPS1710b_3078 thioredoxin-disulfide reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001155472.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: rso:RSc2341 probable cell division ftsk transmembrane protein
YP_001155473.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: bpm:BURPS1710b_3076 outer-membrane lipoprotein carrier protein precursor
YP_001155474.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001155475.1	PFAM: PilT protein domain protein; KEGG: gox:GOX1501 hypothetical protein
YP_001155476.1	PFAM: SpoVT/AbrB domain protein; KEGG: rso:RSc3056 hypothetical protein
YP_001155477.1	KEGG: mfa:Mfla_1097 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_001155478.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sus:Acid_5787 amidohydrolase
YP_001155479.1	PFAM: Choloylglycine hydrolase; KEGG: syg:sync_1125 choloylglycine hydrolase
YP_001155481.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: vei:Veis_3657  DNA exonuclease X
YP_001155482.1	KEGG: rme:Rmet_2129 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase
YP_001155483.1	PFAM: conserved hypothetical protein 103; KEGG: azo:azo0958 conserved hypothetical protein
YP_001155484.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001155485.1	PFAM: Carbohydrate-selective porin OprB; KEGG: dar:Daro_3545 OmpA-like transmembrane domain
YP_001155486.1	PFAM: peptidase S24, S26A and S26B; KEGG: syf:Synpcc7942_1549 DNA polymerase V
YP_001155487.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: eba:p2A244 DNA repair protein
YP_001155488.1	PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: reu:Reut_A3140 hypothetical protein
YP_001155491.1	PFAM: protein of unknown function DUF465; KEGG: pna:Pnap_4690 protein of unknown function DUF465
YP_001155492.1	TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; KEGG: bpm:BURPS1710b_0482 alkylphosphonate utilization operon protein PhnA
YP_001155493.1	PFAM: AsmA family protein; KEGG: rru:Rru_A2657 AsmA
YP_001155494.1	PFAM: membrane protein of unknown function; KEGG: dar:Daro_1075 membrane protein of unknown function
YP_001155495.1	PFAM: SlyX family protein; KEGG: dar:Daro_2678 SlyX
YP_001155496.1	PFAM: luciferase family protein; KEGG: mxa:MXAN_5094 luciferase-like monooxygenase family protein
YP_001155497.1	KEGG: tbd:Tbd_2605 protein of unknown function DUF132
YP_001155498.1	PFAM: YaeQ family protein; KEGG: bbr:BB2522 hypothetical protein
YP_001155499.1	PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: azo:azo1913 conserved hypothetical protein
YP_001155500.1	KEGG: azo:azo1352 coproporphyrinogen oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001155501.1	PFAM: OmpW family protein; KEGG: rpb:RPB_4324 OmpW
YP_001155502.1	KEGG: rme:Rmet_2638  ATP-ase
YP_001155503.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0181 ferric-enterobactin ABC transporter ATPase
YP_001155504.1	KEGG: bxe:Bxe_B2344 hypothetical protein
YP_001155505.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: bxe:Bxe_B2345  DnaJ chaperone protein
YP_001155506.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: reu:Reut_B4278 altronate dehydratase
YP_001155507.1	PFAM: Pirin domain protein domain protein; KEGG: pna:Pnap_2931 pirin domain protein domain protein
YP_001155508.1	KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family
YP_001155509.1	PFAM: phosphate-starvation-inducible E; KEGG: psb:Psyr_1034 phosphate-starvation-inducible E
YP_001155510.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A2429  sulfide dehydrogenase flavocytochrome c oxidoreductase
YP_001155511.1	KEGG: rme:Rmet_3427 cytochrome c, class I
YP_001155512.1	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: bpm:BURPS1710b_2750 oligopeptidase A
YP_001155513.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_001155514.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rme:Rmet_1194 two component transcriptional regulator, LuxR family
YP_001155515.1	KEGG: reu:Reut_A1302 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001155516.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_001155517.1	KEGG: bxe:Bxe_A1542 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein
YP_001155518.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rso:RSc1603 probable dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) protein
YP_001155519.1	TIGRFAM: phasin family protein; KEGG: reh:H16_A1381 phasin (PHA-granule associated protein)
YP_001155520.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rso:RSc1607 probable transmembrane protein
YP_001155521.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: rme:Rmet_1204 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
YP_001155522.1	PFAM: regulatory proteins, IclR; KEGG: rme:Rmet_1205 transcriptional regulator, IclR family
YP_001155523.1	PFAM: dihydroorotate dehydrogenase; KEGG: rme:Rmet_1213 dihydroorotate dehydrogenase
YP_001155524.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_001155525.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_001155526.1	PFAM: NUDIX hydrolase; KEGG: bte:BTH_I2508 pyrophosphatase, MutT/NUDIX family
YP_001155527.1	PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: bxe:Bxe_A3959 para-aminobenzoate synthase, component I
YP_001155528.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1165 probable peptidyl-prolyl cis-trans isomerase A (PPIase A)(rotamase A)(CypH) signal peptide protein
YP_001155529.1	PFAM: DSBA oxidoreductase; KEGG: bch:Bcen2424_5467 DsbA oxidoreductase
YP_001155530.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: bch:Bcen2424_0977 AAA ATPase, central domain protein
YP_001155531.1	KEGG: psb:Psyr_2639 hypothetical protein
YP_001155532.1	PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: aav:Aave_4261 3-hydroxybutyryl-CoA dehydrogenase
YP_001155533.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: reh:H16_A1090 glutathione S-transferase
YP_001155534.1	PFAM: aminotransferase, class I and II; KEGG: bch:Bcen2424_2225 aminotransferase, class I and II
YP_001155535.1	PFAM: protein of unknown function DUF328; KEGG: reh:H16_A1106 hypothetical protein
YP_001155536.1	KEGG: rme:Rmet_2494 hypothetical protein
YP_001155537.1	KEGG: rme:Rmet_2491  signal peptide protein
YP_001155538.1	catalyzes the oxidation of malate to oxaloacetate
YP_001155539.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: reh:H16_A2633 transcriptional regulator, GntR-family
YP_001155540.1	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rso:RSc1996  transmembrane succinate dehydrogenase (cytochrome b-556 subunit) oxidoreductase
YP_001155541.1	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: rme:Rmet_2485 succinate dehydrogenase, cytochrome b subunit
YP_001155542.1	KEGG: rso:RSc1994  succinate dehydrogenase (flavoprotein subunit) oxidoreductase; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001155543.1	TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: rso:RSc1993  succinate dehydrogenase (iron-sulfur subunit) oxidoreductase
YP_001155544.1	PFAM: protein of unknown function DUF339; KEGG: rso:RSc1992 hypothetical protein
YP_001155545.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_001155546.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_001155548.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_001155549.1	KEGG: rme:Rmet_2472 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_001155550.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_001155551.1	KEGG: dar:Daro_0866 hypothetical protein
YP_001155552.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001155553.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rso:RSc1984 N-(5'-phosphoribosyl)anthranilate isomerase
YP_001155554.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001155555.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_001155556.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: rme:Rmet_2464 acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_001155557.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: reu:Reut_A2302 folylpolyglutamate synthetase
YP_001155558.1	PFAM: Sporulation domain protein; KEGG: reh:H16_A2609 hypothetical membrane associated protein
YP_001155559.1	PFAM: Colicin V production protein; KEGG: rso:RSc1977 probable colicin V production transmembrane protein
YP_001155560.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001155561.1	catalyzes the conversion of O-succinylhomoserine into homocysteine
YP_001155562.1	PFAM: thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: eba:ebA59 predicted SAM-dependent methyltransferase
YP_001155563.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aeh:Mlg_1923 ABC transporter related
YP_001155564.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aeh:Mlg_1924 molybdate ABC transporter, inner membrane subunit
YP_001155566.1	PFAM: OmpA/MotB domain protein; KEGG: reu:Reut_A0796 OmpA/MotB
YP_001155568.1	PFAM: cytochrome c, class I; KEGG: pfl:PFL_3402 cytochrome c family protein
YP_001155569.1	KEGG: pfl:PFL_3403 cytochrome c family protein
YP_001155570.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sfu:Sfum_0512 protein of unknown function DUF395, YeeE/YedE
YP_001155571.1	KEGG: sfu:Sfum_0511 rhodanese domain protein
YP_001155573.1	KEGG: sme:SMb21551 hypothetical protein
YP_001155574.1	PFAM: Rhodanese domain protein; KEGG: aeh:Mlg_1647 rhodanese domain protein
YP_001155575.1	PFAM: regulatory protein, ArsR; helix-turn-helix, HxlR type; KEGG: bur:Bcep18194_B1884 transcriptional regulator, ArsR family
YP_001155576.1	KEGG: rfr:Rfer_0021 hypothetical protein
YP_001155577.1	PFAM: UbiA prenyltransferase; KEGG: eba:ebA3963 predicted 1,4-dihydroxy-2-naphthoate octaprenyltransferase
YP_001155578.1	PFAM: cyclic nucleotide-binding; KEGG: rru:Rru_A1622 transcriptional regulator, Crp/Fnr family
YP_001155579.1	PFAM: High potential iron-sulfur protein; KEGG: rfr:Rfer_3162 twin-arginine translocation pathway signal
YP_001155580.1	PFAM: protein of unknown function DUF81; KEGG: rso:RSc1541 probable transmembrane protein
YP_001155581.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: neu:NE2567 hypothetical protein
YP_001155582.1	PFAM: beta-lactamase domain protein; KEGG: reh:H16_A1980 hydroxyacylglutathione hydrolase
YP_001155583.1	PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: reu:Reut_A3258 oxidoreductase, molybdopterin binding:Mo-co oxidoreductase dimerisation domain
YP_001155584.1	PFAM: cytochrome c, class I; KEGG: ade:Adeh_2285 cytochrome c, class I
YP_001155585.1	KEGG: reu:Reut_A3255 twin-arginine translocation pathway signal
YP_001155586.1	KEGG: reh:H16_A3568 sulfur oxidation protein (SoxZ)
YP_001155587.1	KEGG: mpt:Mpe_A2434 hypothetical protein
YP_001155588.1	KEGG: mpt:Mpe_A2433 hypothetical protein
YP_001155589.1	PFAM: 5'-Nucleotidase domain protein; KEGG: reu:Reut_A3249 twin-arginine translocation pathway signal
YP_001155590.1	KEGG: mpt:Mpe_A2431 conserved hypothetical signal peptide protein
YP_001155591.1	PFAM: beta-lactamase domain protein; KEGG: mpt:Mpe_A2427 beta lactamase precursor
YP_001155592.1	KEGG: tbd:Tbd_1840 hypothetical protein
YP_001155593.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: reh:H16_A2825 predicted transporter component
YP_001155594.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE
YP_001155595.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: mpt:Mpe_A2717  transmembrane protein
YP_001155596.1	PFAM: protein of unknown function DUF442; KEGG: mpt:Mpe_A1235 hypothetical protein
YP_001155597.1	PFAM: thioesterase superfamily protein; KEGG: vei:Veis_3983 thioesterase superfamily protein
YP_001155598.1	SMART: Rhodanese domain protein; KEGG: dar:Daro_2715 rhodanese-like
YP_001155599.1	PFAM: cytochrome c, class I; KEGG: dar:Daro_2492 cytochrome c, class I
YP_001155600.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pfl:PFL_0117 glutaryl-CoA dehydrogenase
YP_001155601.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: reu:Reut_A0480 protein of unknown function DUF165
YP_001155602.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1844 ABC transporter related
YP_001155603.1	PFAM: protein of unknown function DUF1289; KEGG: rme:Rmet_1581 protein of unknown function DUF1289
YP_001155604.1	PFAM: protein of unknown function DUF482; KEGG: bml:BMA10299_A3011 hypothetical protein
YP_001155605.1	KEGG: aav:Aave_2791 lactoylglutathione lyase; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_001155606.1	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: bch:Bcen2424_1461 electron-transferring-flavoprotein dehydrogenase
YP_001155607.1	KEGG: reu:Reut_A1269 coenzyme A transferase; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_001155608.1	KEGG: rme:Rmet_1154 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_001155609.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: alpha/beta hydrolase fold; cation efflux protein; KEGG: reu:Reut_A1272 alpha/beta hydrolase fold
YP_001155610.1	PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; KEGG: rme:Rmet_1159 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
YP_001155611.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001155612.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: bps:BPSL1944 translation initiation factor IF-3
YP_001155613.1	PFAM: ribosomal protein L35; KEGG: bxe:Bxe_A1373 ribosomal protein L35
YP_001155614.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001155615.1	KEGG: reh:H16_A1343 phenylalanyl-tRNA synthetase alpha chain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein
YP_001155616.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001155617.1	TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: reu:Reut_A1281 integration host factor, alpha subunit
YP_001155618.1	PFAM: regulatory protein, MerR; KEGG: bbr:BB2043  MerR-family transcriptional regulator
YP_001155619.1	PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_1850 phenylacetic acid degradation-related protein
YP_001155620.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: aav:Aave_1150 histone family protein nucleoid-structuring protein H-NS
YP_001155621.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: dar:Daro_0562 excisionase/Xis, DNA-binding
YP_001155622.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_001155623.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: reu:Reut_A2046 dihydrolipoamide succinyltransferase
YP_001155624.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_001155625.1	PFAM: AFG1-family ATPase; KEGG: rme:Rmet_2047 AFG1-like ATPase
YP_001155626.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: aav:Aave_3707 PHP C-terminal domain protein
YP_001155627.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001155628.1	KEGG: dar:Daro_2716 hypothetical protein
YP_001155629.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001155630.1	PFAM: NlpBDapX family lipoprotein; KEGG: rso:RSc1146 probable transmembrane protein
YP_001155632.1	PFAM: Cupin 4 family protein; KEGG: bxe:Bxe_A1614 hypothetical protein
YP_001155633.1	KEGG: bpm:BURPS1710b_2693  FkbP-type peptidyl-prolyl cis-trans isomerase
YP_001155634.1	TIGRFAM: serine O-acetyltransferase; KEGG: reu:Reut_A1117 serine O-acetyltransferase
YP_001155635.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: bpe:BP1901 probable methyltransferase
YP_001155636.1	PFAM: inositol monophosphatase; KEGG: reu:Reut_A1115 inositol-1(or 4)-monophosphatase
YP_001155637.1	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: reu:Reut_A1118 UDP-2,3-diacylglucosamine hydrolase
YP_001155638.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1164 probable peptidyl-prolyl cis-trans isomerase B (ppiase B) (rotamase B)(cypB protein)
YP_001155639.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2
YP_001155640.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001155641.1	PFAM: HhH-GPD family protein; KEGG: reu:Reut_A1123 HhH-GPD
YP_001155642.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_001155643.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase domain protein; KEGG: reu:Reut_A1125 PP-loop
YP_001155644.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_001155645.1	PFAM: metallophosphoesterase; KEGG: ajs:Ajs_0506 metallophosphoesterase
YP_001155646.1	PFAM: HipA domain protein; KEGG: pna:Pnap_4338 HipA domain protein
YP_001155647.1	KEGG: rfr:Rfer_3066 transcriptional regulator, XRE family
YP_001155648.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein
YP_001155649.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: lpp:lpp2581 hypothetical protein
YP_001155650.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: bja:blr6726 AcrB/AcrD/AcrF family protein
YP_001155652.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_2745 L-carnitine dehydratase/bile acid-inducible protein F
YP_001155653.1	PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_4037 pyruvate carboxyltransferase
YP_001155654.1	KEGG: dar:Daro_3019 phasin
YP_001155657.1	PFAM: Smr protein/MutS2; KEGG: dps:DP1166 hypothetical protein
YP_001155658.1	PFAM: protein of unknown function DUF883, ElaB; KEGG: azo:azo3667 conserved hypothetical membrane protein
YP_001155659.1	KEGG: rme:Rmet_2656  transmembrane protein
YP_001155661.1	PFAM: phosphoribosyltransferase; KEGG: syw:SYNW0814 adenine phosphoribosyltransferase
YP_001155662.1	KEGG: nwi:Nwi_3067 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase
YP_001155663.1	PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll1319 acyl-CoA synthase
YP_001155664.1	catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate
YP_001155665.1	KEGG: rme:Rmet_1758 hypothetical protein
YP_001155666.1	KEGG: sme:SMa0945 hypothetical protein
YP_001155667.1	PFAM: peptidase U32; KEGG: rfr:Rfer_1385 peptidase U32
YP_001155669.1	KEGG: rso:RSc0100 probable bifunctional protein: hydroxy-phosphomethylpyrimidine kinase and hydroxy-methylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1
YP_001155672.1	KEGG: rfr:Rfer_2467 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_001155673.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_001155674.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rfr:Rfer_2465 thiamine biosynthesis protein ThiS
YP_001155675.1	PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_4314 FAD dependent oxidoreductase
YP_001155676.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001155677.1	PFAM: NUDIX hydrolase; KEGG: ngo:NGO2040 hypothetical protein
YP_001155678.1	PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_2522 major facilitator superfamily MFS_1
YP_001155679.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_0830 L-carnitine dehydratase/bile acid-inducible protein F
YP_001155680.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001155681.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_001155682.1	PFAM: protein of unknown function DUF182; KEGG: mpt:Mpe_A3412 hypothetical protein
YP_001155683.1	KEGG: rpa:RPA3797 hypothetical protein
YP_001155684.1	PFAM: Endoribonuclease L-PSP; KEGG: rme:Rmet_2512 endoribonuclease L-PSP
YP_001155685.1	KEGG: reu:Reut_A1021 hypothetical protein
YP_001155686.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_A1023 AAA ATPase, central region:ATPase associated with various cellular activities, AAA_5
YP_001155687.1	KEGG: rso:RSc0999  periplasmic cytochrome type-c oxidoreductase signal peptide protein
YP_001155688.1	PFAM: cytochrome c, class I; KEGG: rso:RSc1000  periplasmic cytochrome type-c oxidoreductase signal peptide protein
YP_001155689.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: azo:azo0684 transcriptional regulator, GntR-family
YP_001155690.1	MDM; functions in conversion of succinate to propionate
YP_001155691.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_001155692.1	PFAM: carboxyl transferase; KEGG: mpt:Mpe_A1016 propionyl-CoA carboxylase beta subunit
YP_001155693.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: mpt:Mpe_A1017 propionyl-CoA carboxylase, alpha subunit
YP_001155694.1	KEGG: dar:Daro_0300 lactoylglutathione lyase
YP_001155695.1	PFAM: peptidase M22, glycoprotease; KEGG: bxe:Bxe_A1654 peptidase M22, glycoprotease
YP_001155696.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: reh:H16_A2117 ribosomal-protein-alanine acetyltransferase
YP_001155698.1	PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A1659 major facilitator superfamily (MFS) transporter
YP_001155699.1	KEGG: bpm:BURPS1710b_2603 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_001155700.1	KEGG: rso:RSc1627 probable transmembrane protein
YP_001155701.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bxe:Bxe_A2346 pseudouridine synthase, RluD
YP_001155702.1	PFAM: protein of unknown function DUF152; KEGG: yps:YPTB0847 conserved hypothetical protein
YP_001155703.1	TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rso:RSc1631 probable poly-beta-hydroxybutyrate polymerase transmembrane protein
YP_001155704.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001155705.1	TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: reh:H16_A1440 transcriptional regulator of phasin expression
YP_001155706.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_001155707.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_001155708.1	KEGG: bxe:Bxe_A2331 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase, type 3
YP_001155709.1	KEGG: reu:Reut_A1360 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_001155710.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: rso:RSc1643 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_001155711.1	KEGG: rso:RSc1644 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase
YP_001155712.1	PFAM: nitroreductase; KEGG: reh:H16_A1142 nitroreductase
YP_001155713.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001155714.1	KEGG: rso:RSc1711 probable ATP-dependent protease (proteolytic subunit) transmembrane protein; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14, ClpP
YP_001155715.1	binds and unfolds substrates as part of the ClpXP protease
YP_001155716.1	KEGG: reu:Reut_A1382 peptidase S16, ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_001155717.1	KEGG: rfr:Rfer_2249 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_001155718.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bpe:BP1733 acyl-CoA thioesterase I precursor
YP_001155719.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A1385 ABC transporter related
YP_001155720.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001155721.1	KEGG: reu:Reut_A2336 hypothetical protein
YP_001155722.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_001155723.1	KEGG: deh:cbdb_A54 hypothetical protein
YP_001155724.1	KEGG: reu:Reut_A2874 conserved hypothetical signal peptide protein
YP_001155725.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001155726.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_001155727.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001155728.1	PFAM: Septum formation initiator; KEGG: reu:Reut_A1092 septum formation initiator
YP_001155729.1	PFAM: Hsp33 protein; KEGG: bps:BPSL2267  HSP33 chaperonin
YP_001155730.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001155731.1	KEGG: cps:CPS_2751 hypothetical protein
YP_001155732.1	KEGG: dar:Daro_1174 hypothetical protein
YP_001155734.1	PFAM: phosphopantetheine-binding; KEGG: pna:Pnap_2673 phosphopantetheine-binding
YP_001155735.1	PFAM: beta-ketoacyl synthase; KEGG: pna:Pnap_2672 beta-ketoacyl synthase
YP_001155737.1	KEGG: reh:H16_A2157 hypothetical protein
YP_001155738.1	KEGG: pol:Bpro_4563 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding
YP_001155739.1	PFAM: protein of unknown function UPF0227; KEGG: bbr:BB4394 hypothetical protein
YP_001155740.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mpt:Mpe_A0423 hypothetical protein
YP_001155741.1	KEGG: bpm:BURPS1710b_0598 hypothetical protein
YP_001155742.1	PFAM: Ion transport 2 domain protein; KEGG: rde:RD1_4108 hypothetical protein
YP_001155743.1	PFAM: Ankyrin; KEGG: reu:Reut_A1438 ankyrin
YP_001155744.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: reh:H16_A1573 Mg-dependent DNase
YP_001155745.1	KEGG: rme:Rmet_1827 DNA polymerase III, delta prime subunit
YP_001155746.1	PFAM: thymidylate kinase; KEGG: reu:Reut_A1434 thymidylate kinase
YP_001155747.1	PFAM: aminodeoxychorismate lyase; KEGG: nmu:Nmul_A1077 aminodeoxychorismate lyase
YP_001155748.1	KEGG: bam:Bamb_1832 glycine cleavage T protein (aminomethyl transferase)
YP_001155749.1	PFAM: protein of unknown function DUF833; KEGG: reu:Reut_A1430 protein of unknown function DUF833
YP_001155750.1	PFAM: thioesterase superfamily protein; KEGG: reu:Reut_A1410 phenylacetic acid degradation-related protein
YP_001155751.1	PFAM: protein of unknown function UPF0061; KEGG: bch:Bcen2424_1908 protein of unknown function UPF0061
YP_001155752.1	TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rso:RSc1747 peptide methionine sulfoxide reductase
YP_001155753.1	Involved in cell division; probably involved in intracellular septation
YP_001155754.1	PFAM: BolA family protein; KEGG: rso:RSc1745 hypothetical protein
YP_001155755.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: reh:H16_A1514 peptidyl-prolyl cis-trans isomerase
YP_001155756.1	PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A1318  MFS transporter
YP_001155757.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001155758.1	PFAM: CBS domain containing protein; KEGG: reh:H16_A1314 conserved hypothetical protein with CBS domain
YP_001155759.1	TIGRFAM:  ribonuclease BN; PFAM: ribonuclease BN; KEGG: bte:BTH_I2618 YihY family protein
YP_001155760.1	PFAM: flavodoxin/nitric oxide synthase; KEGG: rme:Rmet_1130 flavodoxin/nitric oxide synthase
YP_001155761.1	KEGG: bxe:Bxe_A1352 hypothetical protein
YP_001155762.1	PFAM: FAD linked oxidase domain protein; KEGG: bte:BTH_I2621 oxidoreductase, FAD-binding
YP_001155763.1	PFAM: alpha/beta hydrolase fold; KEGG: reh:H16_A0197 predicted hydrolase or acyltransferase
YP_001155764.1	KEGG: rme:Rmet_3579 calcium-binding EF-hand
YP_001155765.1	KEGG: bpe:BP0876  lipoprotein
YP_001155767.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mpt:Mpe_A0446  polar amino acid transport system ATP-binding protein
YP_001155768.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0611 polar amino acid ABC transporter, inner membrane subunit
YP_001155769.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0610 polar amino acid ABC transporter, inner membrane subunit
YP_001155770.1	PFAM: extracellular solute-binding protein, family 3; KEGG: vei:Veis_1219 extracellular solute-binding protein, family 3
YP_001155771.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:blr3727 NADH dehydrogenase
YP_001155772.1	PFAM: Choloylglycine hydrolase; KEGG: stt:t1459  secreted hydrolase
YP_001155773.1	KEGG: bxe:Bxe_B2761  PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001155774.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_001155775.1	KEGG: mpt:Mpe_A3485  nitrate transport system ATP-binding protein; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001155776.1	TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3973 nitrate ABC transporter, inner membrane subunit
YP_001155777.1	KEGG: pol:Bpro_0292 ABC transporter nitrate-binding protein
YP_001155778.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_001155779.1	KEGG: reh:H16_A0359 ABC-type transporter, periplasmic component: NitT family
YP_001155780.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3276 nitrite reductase (NAD(P)H) large subunit, NirB
YP_001155781.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: mpt:Mpe_A2318  nitrite reductase small subunit
YP_001155782.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pna:Pnap_1404 molybdopterin oxidoreductase
YP_001155783.1	PFAM: glycosyl transferase, family 3; KEGG: pna:Pnap_1403 glycosyl transferase, family 3
YP_001155784.1	PFAM: HPP family protein+B94; KEGG: nmu:Nmul_A0073 conserved hypothetical membrane spanning protein
YP_001155785.1	KEGG: azo:azo3102 conserved hypothetical membrane protein
YP_001155786.1	PFAM: CBS domain containing protein; HPP family protein+B94; KEGG: mpt:Mpe_A0317 CBS domain protein
YP_001155787.1	PFAM: protein of unknown function DUF1348; KEGG: aba:Acid345_2217 protein of unknown function DUF1348
YP_001155788.1	PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase
YP_001155790.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A2510 TonB-dependent receptor
YP_001155791.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001155792.1	KEGG: bml:BMA10299_A0579 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS
YP_001155793.1	KEGG: rme:Rmet_2188 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase
YP_001155794.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: rso:RSc1525 probable ribosomal RNA large subunit methyltransferase J (cell division protein ftsj)
YP_001155795.1	PFAM: protein of unknown function UPF0044; KEGG: reh:H16_A2449 predicted RNA-binding protein containing KH domain
YP_001155796.1	KEGG: reh:H16_A2450 conserved hypothetical membrane spanning protein
YP_001155797.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: reh:H16_A2451 transcription elongation factor GreA
YP_001155798.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001155799.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: bxe:Bxe_A1256 carbamoyl-phosphate synthase, small subunit
YP_001155800.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_001155801.1	PFAM: Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: rme:Rmet_2205 lytic transglycosylase, catalytic
YP_001155802.1	PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A2187 hydroxyacylglutathione hydrolase
YP_001155803.1	PFAM: Methyltransferase type 11; KEGG: rme:Rmet_2207 methyltransferase type 11
YP_001155804.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_001155805.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_3581 secretion protein HlyD
YP_001155806.1	PFAM: acriflavin resistance protein; KEGG: mpt:Mpe_A1335  RND efflux transporter
YP_001155807.1	KEGG: bur:Bcep18194_A4426 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_001155808.1	KEGG: reu:Reut_A0462 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_001155812.1	PFAM: Amidase; KEGG: bbr:BB4925 amidase
YP_001155813.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2118 uncharacterized protein UPF0065
YP_001155814.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: rfr:Rfer_4113 NADH:flavin oxidoreductase/NADH oxidase
YP_001155815.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: mpt:Mpe_A3524  transmembrane aldehyde dehydrogenase oxidoreductase
YP_001155816.1	PFAM: protein of unknown function DUF1178; KEGG: rso:RSc2046 hypothetical protein
YP_001155817.1	PFAM: NUDIX hydrolase; KEGG: bte:BTH_I1076 pyrophosphatase, MutT/NUDIX family
YP_001155818.1	KEGG: rme:Rmet_0940 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_001155819.1	KEGG: rme:Rmet_0939 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_001155820.1	KEGG: rso:RSc2051 probable transmembrane NADH dehydrogenase I (chain L) oxidoreductase; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I)
YP_001155821.1	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rso:RSc2052 probable transmembrane NADH dehydrogenase I (chain K) oxidoreductase
YP_001155822.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: rso:RSc2053 probable transmembrane NADH dehydrogenase I (chain J) oxidoreductase
YP_001155823.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001155824.1	PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: rso:RSc2055 probable transmembrane NADH dehydrogenase I (chain H) oxidoreductase
YP_001155825.1	TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase; KEGG: rso:RSc2056 probable NADH dehydrogenase I (chain G) oxidoreductase
YP_001155826.1	KEGG: bur:Bcep18194_A5572 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
YP_001155827.1	TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: rso:RSc2058 probable NADH dehydrogenase I (chain E) oxidoreductase
YP_001155828.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001155829.1	KEGG: reu:Reut_A0963 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit
YP_001155830.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001155831.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001155832.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: rme:Rmet_0926 preprotein translocase, SecG subunit
YP_001155833.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001155834.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: reu:Reut_A0958 zinc-containing alcohol dehydrogenase superfamily
YP_001155835.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: reh:H16_A1045 polyribonucleotide nucleotidyltransferase
YP_001155836.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001155837.1	KEGG: pat:Patl_4149  lipoprotein
YP_001155838.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_001155839.1	KEGG: rme:Rmet_0916 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_001155840.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001155841.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_001155842.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_001155843.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: reh:H16_A1035 acetolactate synthase III (valine sensitive)
YP_001155844.1	PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bur:Bcep18194_A5593 RNA polymerase sigma-70 factor
YP_001155845.1	KEGG: rfr:Rfer_3320  transmembrane protein
YP_001155846.1	KEGG: bps:BPSL1193 hypothetical protein
YP_001155847.1	PFAM: RDD domain containing protein; KEGG: azo:azo3150 conserved hypothetical RDD family protein
YP_001155848.1	PFAM: protein of unknown function DUF214; KEGG: rso:RSc2091 probable transmembrane protein
YP_001155849.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rfr:Rfer_1638 short-chain dehydrogenase/reductase SDR
YP_001155850.1	PFAM: Uncharacterized protein UPF0065; KEGG: aav:Aave_1312 uncharacterized protein UPF0065
YP_001155851.1	KEGG: pca:Pcar_2752 hypothetical protein
YP_001155852.1	PFAM: Mammalian cell entry related domain protein; KEGG: vvu:VV1_0009 ABC-type transport system, periplasmic component
YP_001155853.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_2750 ABC transporter, ATP-binding protein
YP_001155854.1	PFAM: protein of unknown function DUF140; KEGG: pca:Pcar_2749 ABC-type transport system, permease component
YP_001155855.1	TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: reh:H16_A0956 transcription elongation factor
YP_001155856.1	KEGG: reu:Reut_A2471 RelA/SpoT protein; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region
YP_001155857.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001155858.1	Essential for recycling GMP and indirectly, cGMP
YP_001155859.1	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rso:RSc2156 hypothetical protein
YP_001155860.1	KEGG: rso:RSc2159 probable ribonuclease ph (tRNA nucleotidyltransferase) protein; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease
YP_001155861.1	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: dar:Daro_3852 Ham1-like protein
YP_001155862.1	KEGG: rme:Rmet_0850  oxygen-independent coproporphyrinogen III oxidase; TIGRFAM:  oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001155863.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2752 uncharacterized protein UPF0065
YP_001155864.1	PFAM: beta-lactamase domain protein; KEGG: ppr:PBPRA1265 hypothetical beta-lactamase
YP_001155865.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: atc:AGR_L_216 hypothetical protein
YP_001155866.1	PFAM: Patatin; KEGG: rpc:RPC_3027 patatin
YP_001155868.1	PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: msm:MSMEG_1606 benzoylformate decarboxylase
YP_001155870.1	PFAM: FAD dependent oxidoreductase; KEGG: reh:H16_A1319 predicted dehydrogenase
YP_001155871.1	PFAM: phosphoglucose isomerase (PGI); KEGG: rme:Rmet_1879 phosphoglucose isomerase (PGI)
YP_001155872.1	PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rme:Rmet_2716 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
YP_001155874.1	PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: psp:PSPPH_0780 outer membrane protein, OMP85 family
YP_001155875.1	TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: gbe:GbCGDNIH1_1474 hemagglutinin-related protein
YP_001155876.1	PFAM: sulfotransferase; TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: RNA-processing protein, HAT helix repeating-containing protein; Tetratricopeptide domain protein; KEGG: rso:RSc3163 probable TPR domain protein
YP_001155877.1	KEGG: mag:amb3787 hypothetical protein
YP_001155878.1	TIGRFAM: methyltransferase FkbM family; KEGG: rpc:RPC_4783 methyltransferase FkbM
YP_001155879.1	PFAM: adenylylsulfate kinase; KEGG: pha:PSHAa0209 adenosine 5'-phosphosulfate kinase
YP_001155880.1	PFAM: peptidase M48, Ste24p; KEGG: mxa:MXAN_6435 peptidase, M48 family
YP_001155881.1	PFAM: protein of unknown function DUF583; KEGG: nar:Saro_0062 protein of unknown function DUF583
YP_001155883.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001155884.1	KEGG: mpt:Mpe_A1553 nicotinate-nucleotide diphosphorylase (carboxylating); TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_001155885.1	KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family
YP_001155886.1	KEGG: mpt:Mpe_A1551 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_001155887.1	PFAM: PemK family protein; KEGG: gox:GOX2564 PemK-like protein
YP_001155888.1	KEGG: cch:Cag_0428 transcriptional regulator/antitoxin, MazE
YP_001155889.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ajs:Ajs_3470 formate dehydrogenase, alpha subunit
YP_001155890.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: pna:Pnap_0825 NADH dehydrogenase (quinone)
YP_001155891.1	PFAM: protein of unknown function DUF748; KEGG: cvi:CV1447 hypothetical protein
YP_001155892.1	PFAM: protein of unknown function DUF1080; KEGG: rba:RB7152 probable secreted glycosyl hydrolase
YP_001155893.1	KEGG: eba:ebA5924 hypothetical protein
YP_001155894.1	KEGG: eba:ebA5923 hypothetical protein
YP_001155895.1	unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity
YP_001155896.1	PFAM: phage integrase family protein; KEGG: nmu:Nmul_A0922 phage integrase
YP_001155898.1	PFAM: SMC domain protein; KEGG: pna:Pnap_3541 ATPase-like protein
YP_001155901.1	KEGG: ret:RHE_CH01097 hypothetical protein
YP_001155902.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: oih:OB1762 ATP-dependent DNA helicase
YP_001155903.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: gsu:GSU2183 fic family protein
YP_001155904.1	KEGG: ehi:30.t00029 villidin,  Pfam: TolA Gelsolin HIN FdtA VHP PROSITE: GLU_RICH HP
YP_001155906.1	KEGG: vvu:VV1_2420 chromosome segregation ATPase
YP_001155908.1	KEGG: mgm:Mmc1_1690 protein of unknown function DUF264
YP_001155909.1	KEGG: mes:Meso_1211 hypothetical protein
YP_001155910.1	PFAM: protein of unknown function DUF1376; KEGG: xft:PD1000 hypothetical protein
YP_001155911.1	PFAM: Prophage CP4-57 regulatory
YP_001155912.1	PFAM: restriction modification system DNA specificity domain; KEGG: ppr:PBPRA1802 hypothetical type I restriction enzyme EcoEI specificity protein (S protein)
YP_001155913.1	PFAM: N-6 DNA methylase; KEGG: ppu:PP_4741 type I restriction-modification system, M subunit
YP_001155914.1	PFAM: helicase domain protein; type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: ppu:PP_4740 type I restriction-modification system, R subunit
YP_001155916.1	KEGG: pol:Bpro_5072 hypothetical protein
YP_001155917.1	KEGG: nmu:Nmul_A0110 hypothetical protein
YP_001155918.1	TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2525 acetyl-coenzyme A synthetase
YP_001155919.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: azo:azo2415  fumarate hydratase
YP_001155920.1	KEGG: rso:RSc1956 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase
YP_001155921.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: bur:Bcep18194_A5527 TonB-like protein
YP_001155922.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pna:Pnap_2569 MotA/TolQ/ExbB proton channel
YP_001155923.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rso:RSc1965 probable biopolymer transport transmembrane protein
YP_001155925.1	KEGG: tko:TK0935 TRAP-type transporter, periplasmic component
YP_001155926.1	KEGG: deh:cbdb_A161 phosphate ABC transporter, phosphate-binding protein
YP_001155927.1	KEGG: dde:Dde_1062 phosphate binding protein
YP_001155928.1	KEGG: plt:Plut_1030 hypothetical protein
YP_001155929.1	TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: mgm:Mmc1_2695 filamentous haemagglutinin family outer membrane protein
YP_001155930.1	PFAM: peptidase S45, penicillin amidase; KEGG: pol:Bpro_2452 penicillin amidase
YP_001155933.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001155934.1	KEGG: bja:bll2732  cytochrome c
YP_001155935.1	KEGG: bja:bll2733 probable sulfur oxidation protein
YP_001155936.1	KEGG: bja:bll2734 sulfur oxidation protein SoxY
YP_001155937.1	KEGG: bja:blr3511 probable cytochrome c
YP_001155938.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bja:bll2736  aldehyde dehydrogenase
YP_001155939.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bja:bll2737 oxidoreductase with iron-sulfur subunit
YP_001155940.1	PFAM: LrgA family protein; KEGG: pfo:Pfl_4981 LrgA
YP_001155941.1	PFAM: LrgB family protein; KEGG: reh:H16_A3099  effector of murein hydrolase LrgB
YP_001155942.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065
YP_001155943.1	PFAM: gamma-glutamyltranspeptidase; KEGG: ajs:Ajs_4154 gamma-glutamyltransferase
YP_001155944.1	KEGG: hne:HNE_3264 hypothetical protein
YP_001155945.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dar:Daro_0232 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal
YP_001155946.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: vch:VC1348 response regulator
YP_001155947.1	PFAM: glycoside hydrolase, family 8; KEGG: zmo:ZMO1086 endoglucanase Y
YP_001155948.1	KEGG: reu:Reut_B3520 hypothetical protein
YP_001155949.1	PFAM: Tetratricopeptide TPR_2 repeat protein
YP_001155950.1	PFAM: TPR repeat-containing protein; cellulose synthase operon C domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cvi:CV2675 cellulose synthase, subunit C
YP_001155951.1	PFAM: glycosyl transferase, family 2; type IV pilus assembly PilZ; KEGG: aae:aq_1407 cellulose synthase catalytic subunit
YP_001155953.1	PFAM: diacylglycerol kinase; KEGG: nha:Nham_1484 diacylglycerol kinase
YP_001155954.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aeh:Mlg_0164 diguanylate cyclase
YP_001155955.1	KEGG: rfr:Rfer_3391  PAS/PAC sensor protein; TIGRFAM: metal dependent phophohydrolase; PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; HDOD; SMART: metal-dependent phosphohydrolase, HD region
YP_001155956.1	KEGG: tcr:510377.134 mucin-associated surface protein (MASP) Pfam: Prosystemin PROSITE: ALA_RICH
YP_001155957.1	PFAM: dihydrouridine synthase, DuS; KEGG: reh:H16_A2289 transfer RNA-dihydrouridine synthase
YP_001155958.1	PFAM: protein of unknown function DUF81; KEGG: reu:Reut_A0650 protein of unknown function DUF81
YP_001155959.1	PFAM: Amidase; KEGG: rpa:RPA2500 possible amidase
YP_001155960.1	KEGG: rpa:RPA2499 possible ABC transporter, periplasmic protein
YP_001155961.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA2498 possible ABC transporter, permease
YP_001155962.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2497  anion ABC transporter, ATP-binding protein
YP_001155963.1	KEGG: rpb:RPB_2835 hypothetical protein
YP_001155964.1	PFAM: Amidase; KEGG: rpb:RPB_2085 amidase
YP_001155965.1	KEGG: eca:ECA3956 ABC transporter, substrate binding protein
YP_001155966.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA3955 ABC transporter protein, membrane protein
YP_001155967.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA3954 ABC transporter, ATP-binding protein
YP_001155968.1	KEGG: syw:SYNW1403 hypothetical protein
YP_001155969.1	KEGG: rme:Rmet_0964 urease accessory protein UreG; TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; SMART: AAA ATPase
YP_001155970.1	PFAM: Urease accessory protein UreF; KEGG: reu:Reut_A0997 urease accessory protein UreF
YP_001155971.1	PFAM: UreE urease accessory domain protein domain protein; UreE urease accessory domain protein; KEGG: rso:RSc2031 probable urease accessory protein UreE
YP_001155972.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_001155973.1	KEGG: pau:PA14_64370 urease beta subunit; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit
YP_001155974.1	PFAM: HupE/UreJ protein; KEGG: mca:MCA0164 nickel-iron hydrogenase, accessory protein
YP_001155975.1	KEGG: reh:H16_A1081 UreA amidohydrolase (urease) gamma subunit; TIGRFAM: urease, gamma subunit; PFAM: Urease, gamma subunit region
YP_001155976.1	PFAM: Urease accessory protein UreD; KEGG: bam:Bamb_0782 urease accessory protein UreD
YP_001155977.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rso:RSc2037 probable ATP-binding ABC transporter protein
YP_001155978.1	PFAM: ABC transporter related; KEGG: reh:H16_A1078 ABC-type transporter, ATPase component: HAAT family
YP_001155979.1	PFAM: inner-membrane translocator; KEGG: reh:H16_A1077 ABC-type transporter, permease component: HAAT family
YP_001155980.1	PFAM: inner-membrane translocator; KEGG: rso:RSc2040 probable permease transporter transmembrane protein
YP_001155981.1	KEGG: rso:RSc2041  urea/short-chain amide-binding signal peptide protein
YP_001155982.1	PFAM: secretory lipase; KEGG: nfa:nfa31360 hypothetical protein
YP_001155984.1	KEGG: sus:Acid_4681 protein of unknown function DUF1501
YP_001155985.1	KEGG: sus:Acid_5563 hypothetical protein
YP_001155986.1	KEGG: rso:RSc3291 hypothetical protein
YP_001155987.1	KEGG: reh:H16_A2393 hypothetical protein
YP_001155988.1	KEGG: bja:bll4412 hypothetical protein
YP_001155989.1	PFAM: ferredoxin-dependent glutamate synthase; KEGG: mpt:Mpe_A3620  glutamate synthase
YP_001155990.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cth:Cthe_0129 metal dependent phosphohydrolase
YP_001155991.1	PFAM: pseudouridine synthase; KEGG: pol:Bpro_2906 pseudouridine synthase
YP_001155993.1	TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: reu:Reut_A0762 polyhydroxyalkanoate depolymerase
YP_001155995.1	KEGG: pna:Pnap_2754 cupin 2, conserved barrel domain protein
YP_001155996.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rme:Rmet_2700 glutathione S-transferase-like protein
YP_001155997.1	PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3159 transglutaminase-like
YP_001155998.1	PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rfr:Rfer_2497 protein of unknown function DUF404
YP_001155999.1	PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: pol:Bpro_3161 transglutaminase-like
YP_001156000.1	KEGG: reu:Reut_A0387 hypothetical protein
YP_001156001.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: nmu:Nmul_A1585 RNA binding S1
YP_001156002.1	PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_3546 major facilitator superfamily MFS_1
YP_001156003.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: reu:Reut_A2021 small GTP-binding protein domain:GTP-binding protein TypA
YP_001156004.1	KEGG: rso:RSc1291 probable tRNA pseudouridine synthase B protein; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein
YP_001156005.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001156006.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001156007.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001156008.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_001156009.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: reh:H16_A2309 predicted 16S rRNA uridine-516 pseudouridylate synthase or related pseudouridylate synthase
YP_001156010.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: reu:Reut_A2032 prokaryotic chromosome segregation and condensation protein ScpB
YP_001156011.1	PFAM: Patatin; KEGG: rso:RSc1178 probable lipoprotein transmembrane
YP_001156012.1	PFAM: NLP/P60 protein; KEGG: bte:BTH_I1982 NLP/P60 family protein
YP_001156013.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2143 ABC transporter-related protein
YP_001156014.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reh:H16_A2407 ABC-type transporter, permease component: PepT family
YP_001156015.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A2128 binding-protein-dependent transport systems inner membrane component
YP_001156016.1	PFAM: extracellular solute-binding protein, family 5; KEGG: reu:Reut_A2129 extracellular solute-binding protein, family 5
YP_001156017.1	KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR
YP_001156018.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: azo:azo2963  chromate transport protein
YP_001156019.1	PFAM: Integrase, catalytic region; KEGG: xom:XOO_3705 IS1112 transposase
YP_001156020.1	KEGG: pna:Pnap_2143 hypothetical protein
YP_001156021.1	PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD
YP_001156022.1	PFAM: HpcH/HpaI aldolase; KEGG: pna:Pnap_2139 HpcH/HpaI aldolase
YP_001156023.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065
YP_001156024.1	KEGG: pfl:PFL_3848 hypothetical protein
YP_001156025.1	KEGG: pna:Pnap_3075 BNR/Asp-box repeat protein
YP_001156026.1	PFAM: glycosyl transferase, family 39; KEGG: pol:Bpro_0463 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like
YP_001156028.1	KEGG: pin:Ping_2652 integrase, catalytic region
YP_001156029.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: gox:GOX1323 transposase
YP_001156030.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: reh:H16_A1368 exonuclease III
YP_001156031.1	KEGG: rso:RSc1261 probable nitrogen assimilation regulatory response regulator transcription regulator protein; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase
YP_001156032.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: rso:RSc1260 probable nitrogen regulation (sensor protein kinase) transcription regulator
YP_001156033.1	KEGG: rso:RSc1258  3-hydroxylaminophenol mutase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp
YP_001156034.1	PFAM: molybdopterin binding domain; KEGG: rme:Rmet_2064 molybdopterin binding domain
YP_001156035.1	KEGG: reu:Reut_A2061 probable transmembrane protein
YP_001156036.1	KEGG: rso:RSc1254 probable transmembrane protein
YP_001156037.1	PFAM: polysaccharide deacetylase; KEGG: rme:Rmet_2067 polysaccharide deacetylase
YP_001156038.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1, heme region; KEGG: reh:H16_A2341 cytochrome d1 heme domain
YP_001156039.1	KEGG: rso:RSc1251 probable ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like
YP_001156040.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_001156041.1	PFAM: Fe(II) trafficking protein YggX; KEGG: reh:H16_A2344 Fe-S cluster protector protein
YP_001156042.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_001156043.1	KEGG: rso:RSc1231 probable transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_001156044.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sus:Acid_5787 amidohydrolase
YP_001156045.1	PFAM: coenzyme A transferase; KEGG: dar:Daro_0457 coenzyme A transferase
YP_001156046.1	PFAM: Citrate transporter; KEGG: dar:Daro_0456 hypothetical protein
YP_001156047.1	KEGG: ajs:Ajs_3417 hypothetical protein
YP_001156048.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: reu:Reut_A2071 RNA methyltransferase TrmH, group 3
YP_001156049.1	KEGG: reu:Reut_A2072 3'-5' exoribonuclease, VacB and RNase II:ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; Cold-shock protein, DNA-binding; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein
YP_001156050.1	PFAM: amino acid permease-associated region; KEGG: mac:MA2286 amino acid transporter
YP_001156051.1	PFAM: branched-chain amino acid transport; KEGG: reh:H16_A0573 predicted membrane protein
YP_001156052.1	PFAM: AzlC family protein; KEGG: bxe:Bxe_A0687 branched chain amino acid efflux pump, LivE family
YP_001156053.1	KEGG: cph:Cpha266_1686 hypothetical protein
YP_001156054.1	PFAM: dienelactone hydrolase; KEGG: rso:RS04764  transmembrane protein
YP_001156055.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1077 general substrate transporter:major facilitator superfamily MFS_1
YP_001156057.1	KEGG: pub:SAR11_1188 hypothetical protein
YP_001156058.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_001156059.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001156060.1	PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: rme:Rmet_2097 tRNA synthetase, class II (G, H, P and S)
YP_001156061.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: reh:H16_A2356 membrane protease subunit, stomatin/prohibitin homolog
YP_001156062.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rso:RSc1222 hypothetical transmembrane protein
YP_001156063.1	PFAM: GTP-binding protein, HSR1-related; KEGG: reh:H16_A2358 predicted GTPase
YP_001156064.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: rso:RSc1220  host factor-i protein
YP_001156065.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001156066.1	PFAM: Pyrrolo-quinoline quinone; KEGG: reh:H16_A2361 hypothetical protein
YP_001156067.1	KEGG: reu:Reut_A2084 hypothetical protein
YP_001156068.1	KEGG: reu:Reut_A2085 histidyl-tRNA synthetase, class IIa; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein
YP_001156069.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001156070.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rme:Rmet_2109 hypothetical protein
YP_001156071.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_001156072.1	PFAM: protein of unknown function UPF0005; KEGG: rso:RSc1210 hypothetical transmembrane protein
YP_001156073.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: reu:Reut_A2092 23S rRNA methyltransferase/RumA
YP_001156074.1	KEGG: reh:H16_A2372 predicted 3'-5' exonuclease related to the exonuclease domain of PolB
YP_001156075.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: reu:Reut_A2096 peptidoglycan-binding LysM:peptidase M23B
YP_001156076.1	KEGG: rme:Rmet_2117 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_001156077.1	KEGG: rso:RSc1204 acid phosphatase; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE
YP_001156078.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: mfa:Mfla_1306 heavy metal efflux pump CzcA
YP_001156079.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: mfa:Mfla_1305 secretion protein HlyD
YP_001156080.1	PFAM: outer membrane efflux protein; KEGG: mfa:Mfla_1304 outer membrane efflux protein
YP_001156081.1	KEGG: rfr:Rfer_0847 hypothetical protein
YP_001156082.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bxe:Bxe_A1958  TPR repeat membrane protein
YP_001156083.1	PFAM: UvrD/REP helicase; KEGG: rme:Rmet_2131 UvrD/REP helicase
YP_001156084.1	KEGG: rso:RSc1189 hypothetical protein
YP_001156085.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rso:RSc1188 probable thioredoxin 1 (redox factor) protein
YP_001156086.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001156087.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_001156088.1	KEGG: rso:RSc1181 probable inner membrane transmembrane protein
YP_001156089.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: rso:RSc1180 probable inner membrane transmembrane protein
YP_001156090.1	KEGG: pen:PSEEN5346 hypothetical protein
YP_001156091.1	TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: tbd:Tbd_2514  lipoprotein
YP_001156092.1	KEGG: pen:PSEEN5344 hypothetical protein
YP_001156093.1	KEGG: tbd:Tbd_2516 hypothetical protein
YP_001156094.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3983 uncharacterized protein UPF0065
YP_001156095.1	KEGG: plu:plu0239 hypothetical protein
YP_001156096.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_001156097.1	PFAM: Lytic transglycosylase, catalytic; KEGG: aav:Aave_2727 lytic transglycosylase, catalytic
YP_001156098.1	PFAM: alpha/beta hydrolase fold; KEGG: rso:RSc1396  transmembrane protein
YP_001156099.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bms:BR0063 fumarylacetoacetate hydrolase family protein
YP_001156100.1	KEGG: pna:Pnap_3696 hypothetical protein
YP_001156101.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3949 hypothetical protein
YP_001156102.1	TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ajs:Ajs_1108 haloacid dehalogenase, type II
YP_001156103.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5058 uncharacterized protein UPF0065
YP_001156104.1	KEGG: mca:MCA2108 hypothetical protein
YP_001156105.1	PFAM: class II aldolase/adducin family protein; KEGG: pen:PSEEN2585 class II aldolase
YP_001156106.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bcl:ABC1122 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
YP_001156107.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aav:Aave_1161 ferrous iron transport protein B
YP_001156108.1	PFAM: FeoA family protein; KEGG: mpt:Mpe_A1470 transport protein A
YP_001156109.1	PFAM: Carbohydrate-selective porin OprB; KEGG: reu:Reut_A0411 hypothetical protein
YP_001156110.1	PFAM: Negative transcriptional regulator; KEGG: azo:azo2453 probable negative transcriptional regulator
YP_001156111.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: pol:Bpro_0161 molybdenum ABC transporter, periplasmic molybdate-binding protein
YP_001156112.1	PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_3829 major facilitator superfamily MFS_1
YP_001156113.1	PFAM: regulatory protein, LysR; KEGG: reu:Reut_A0616 regulatory protein, LysR
YP_001156114.1	KEGG: bja:bll6227  sulfate transport system substrate-binding protein
YP_001156115.1	PFAM: TOBE domain protein; KEGG: rpb:RPB_0855 molybdenum-pterin binding protein
YP_001156116.1	KEGG: reu:Reut_A0482 hypothetical protein
YP_001156117.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase
YP_001156118.1	PFAM: thioesterase superfamily protein; KEGG: gox:GOX1683 hypothetical protein
YP_001156119.1	KEGG: bbr:BB4575 hypothetical protein
YP_001156120.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bxe:Bxe_A0648  ATP-dependent RNA helicase 1
YP_001156121.1	PFAM: transglutaminase domain protein; KEGG: azo:azo0103 conserved hypothetical secreted protein
YP_001156122.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tbd:Tbd_0272 thioredoxin family protein
YP_001156123.1	TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rfr:Rfer_2844 selenide, water dikinase
YP_001156124.1	KEGG: pna:Pnap_4882 hypothetical protein
YP_001156125.1	KEGG: dar:Daro_1859 protein of unknown function DUF1330
YP_001156127.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0646 hypothetical protein
YP_001156128.1	SMART: Rhodanese domain protein; KEGG: pau:PA14_30430 thiosulfate sulfurtransferase
YP_001156129.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mag:amb2827 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
YP_001156131.1	KEGG: pat:Patl_0281 tryptophan-rich Ignore
YP_001156133.1	PFAM: globin; KEGG: ajs:Ajs_3454 globin
YP_001156134.1	PFAM: Integral membrane protein TerC; KEGG: mpt:Mpe_A1788 hypothetical protein
YP_001156135.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sme:SMc00763 hypothetical protein
YP_001156136.1	KEGG: rde:RD1_4108 hypothetical protein
YP_001156137.1	PFAM: conserved hypothetical protein 730; KEGG: ajs:Ajs_2487 conserved hypothetical protein 730
YP_001156139.1	SMART: extracellular solute-binding protein, family 3; KEGG: bam:Bamb_6273 extracellular solute-binding protein, family 3
YP_001156140.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dar:Daro_0992 beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
YP_001156141.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; KEGG: dar:Daro_2379 hypothetical protein
YP_001156142.1	PFAM: protein of unknown function DUF6, transmembrane; Protein of unknown function DUF250; KEGG: reh:H16_A0930 permease of the drug/metabolite transporter (DMT) superfamily
YP_001156143.1	KEGG: rfr:Rfer_2762 protein tyrosine phosphatase, receptor type, F-like
YP_001156144.1	KEGG: nar:Saro_2686 hypothetical protein
YP_001156145.1	KEGG: dar:Daro_2722 aminotransferase, class V
YP_001156146.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4641 hypothetical protein
YP_001156147.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bha:BH2000 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
YP_001156148.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: mpt:Mpe_A3051 permeases of the drug/metabolite transporter (DMT) superfamily
YP_001156149.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: azo:azo1016 L-lactate dehydrogenase
YP_001156150.1	KEGG: bxe:Bxe_B2086 hypothetical protein
YP_001156151.1	PFAM: cytochrome B561; KEGG: reh:H16_A0747 cytochrome b561
YP_001156152.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: syf:Synpcc7942_0473 NADH:flavin oxidoreductase Old Yellow enzyme family-like
YP_001156153.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mag:amb0589 transcriptional regulator
YP_001156154.1	PFAM: Rubrerythrin; KEGG: eba:ebA6038 rubrerythrin/nigerythrin-like protein
YP_001156155.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: abo:ABO_0163 rubredoxin
YP_001156156.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nmu:Nmul_A0171 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001156159.1	PFAM: type II and III secretion system protein; Tetratricopeptide TPR_2 repeat protein; KEGG: plt:Plut_1029 type II secretory pathway component PulD-like
YP_001156160.1	PFAM: DSBA oxidoreductase; KEGG: maq:Maqu_4051 DsbA oxidoreductase
YP_001156162.1	KEGG: pub:SAR11_0982 hypothetical protein
YP_001156163.1	PFAM: manganese and iron superoxide dismutase; KEGG: rso:RSc2526 probable superoxide dismutase [Fe] protein
YP_001156164.1	TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pna:Pnap_2539 3-hydroxybutyrate dehydrogenase
YP_001156165.1	KEGG: rme:Rmet_0366 hypothetical protein
YP_001156166.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_0583 acyl-CoA dehydrogenase-like
YP_001156167.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pna:Pnap_2141 L-carnitine dehydratase/bile acid-inducible protein F
YP_001156168.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_001156169.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: nmu:Nmul_A0606 endonuclease/exonuclease/phosphatase
YP_001156170.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:ebA5015  permease component of ABC transporter
YP_001156171.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1759 ABC transporter related
YP_001156172.1	KEGG: mpt:Mpe_A1174 hypothetical protein
YP_001156173.1	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: reh:H16_A2934 cytochrome b subunit of formate dehydrogenase
YP_001156174.1	KEGG: rme:Rmet_2759  lipoprotein
YP_001156175.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: reu:Reut_A0683 4Fe-4S ferredoxin, iron-sulfur binding
YP_001156176.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: reu:Reut_A0682 twin-arginine translocation pathway signal
YP_001156177.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: rme:Rmet_2763 cytoplasmic chaperone TorD
YP_001156178.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: reu:Reut_A0679 4Fe-4S ferredoxin, iron-sulfur binding
YP_001156179.1	KEGG: rfr:Rfer_3265 hypothetical protein
YP_001156180.1	KEGG: rme:Rmet_2766 hypothetical protein
YP_001156181.1	PFAM: protein of unknown function DUF59; KEGG: rso:RSc2379 probable mrp protein ATP-binding
YP_001156182.1	PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter
YP_001156183.1	PFAM: protein of unknown function DUF47; KEGG: aav:Aave_1880 protein of unknown function DUF47
YP_001156184.1	PFAM: Heavy metal transport/detoxification protein; KEGG: reh:H16_A3669 copper chaperone, heavy metal ion binding
YP_001156185.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: pna:Pnap_4090 heavy metal translocating P-type ATPase
YP_001156186.1	KEGG: reh:H16_A3301 hypothetical protein
YP_001156187.1	KEGG: tcx:Tcr_1743 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like
YP_001156189.1	PFAM: glycosyl transferase, family 9; KEGG: tcx:Tcr_1745 glycosyl transferase, family 9
YP_001156190.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: azo:azo2159 conservd hypothetical membrane protein
YP_001156191.1	PFAM: protein of unknown function DUF519; KEGG: bpm:BURPS1710b_A1916 hypothetical protein
YP_001156192.1	PFAM: SOUL heme-binding protein; KEGG: pcr:Pcryo_1702 SOUL heme-binding protein
YP_001156193.1	PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: reh:H16_A1922  muramoyl-tetrapeptide carboxypeptidase,homologs of microcin C7 resistance protein MccF
YP_001156194.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: ajs:Ajs_2282 CMP/dCMP deaminase, zinc-binding
YP_001156195.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: reh:H16_A1924 6-pyruvoyl tetrahydrobiopterin synthase
YP_001156196.1	PFAM: Radical SAM domain protein; KEGG: rso:RSc1449 hypothetical protein
YP_001156198.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: azo:azo2509 conserved hypothetical protein
YP_001156199.1	PFAM: protein of unknown function DUF455; KEGG: bam:Bamb_2139 protein of unknown function DUF455
YP_001156200.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001156201.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001156202.1	PFAM: protein of unknown function UPF0125; KEGG: reh:H16_A2033 hypothetical protein
YP_001156203.1	PFAM: cyclase/dehydrase; KEGG: rme:Rmet_1457 cyclase/dehydrase
YP_001156204.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001156205.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: bxe:Bxe_B0763 hypothetical protein
YP_001156206.1	PFAM: protein of unknown function DUF403; KEGG: reu:Reut_A1084 protein of unknown function DUF403, bacteria
YP_001156207.1	PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; KEGG: rso:RSc1123 hypothetical protein
YP_001156208.1	KEGG: rso:RSc1124 hypothetical protein
YP_001156209.1	KEGG: psb:Psyr_4859 ISPsy8, transposase OrfA
YP_001156210.1	PFAM: Integrase, catalytic region; KEGG: bca:BCE_A0056 IS3-family transposase, OrfB
YP_001156211.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001156212.1	PFAM: protein of unknown function DUF299; KEGG: rme:Rmet_1452 protein of unknown function DUF299
YP_001156213.1	PFAM: secretory lipase; KEGG: mes:Meso_1425 secretory lipase
YP_001156214.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rme:Rmet_1450 tRNA/rRNA methyltransferase (SpoU)
YP_001156215.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001156216.1	KEGG: bps:BPSL2146  lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19
YP_001156217.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_001156218.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001156219.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_001156220.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: rme:Rmet_1444 outer membrane chaperone Skp (OmpH)
YP_001156221.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: rme:Rmet_1443 surface antigen (D15)
YP_001156222.1	TIGRFAM:  membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: sat:SYN_00915 membrane metalloprotease
YP_001156223.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001156224.1	PFAM: phosphatidate cytidylyltransferase; KEGG: bch:Bcen2424_2014 phosphatidate cytidylyltransferase
YP_001156225.1	KEGG: rme:Rmet_1439 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_001156226.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001156227.1	Catalyzes the phosphorylation of UMP to UDP
YP_001156228.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001156229.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001156230.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: rme:Rmet_1434 methionine aminopeptidase, type I
YP_001156231.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_001156232.1	PFAM: DoxX family protein; KEGG: rfr:Rfer_2535 DoxX
YP_001156233.1	KEGG: bxe:Bxe_A1676 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like
YP_001156234.1	SMART: ZipA, C-terminal FtsZ-binding region; KEGG: rso:RSc1397 hypothetical protein
YP_001156235.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: reh:H16_A2062 chromosome segregation ATPase
YP_001156236.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_001156237.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_001156238.1	involved in methylation of ribosomal protein L3
YP_001156239.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001156240.1	KEGG: bur:Bcep18194_A5098 hypothetical protein
YP_001156241.1	PFAM: K+ potassium transporter; KEGG: rme:Rmet_1231 K+ potassium transporter
YP_001156242.1	KEGG: rru:Rru_A0637 hypothetical protein
YP_001156243.1	TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: nmu:Nmul_A2506 DNA internalization-related competence protein ComEC/Rec2
YP_001156244.1	PFAM: TatD-related deoxyribonuclease; KEGG: bpm:BURPS1710b_2716 hydrolase, TatD family
YP_001156245.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3699 lipoprotein releasing system, ATP-binding protein
YP_001156246.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: reh:H16_A1173 ABC-type transporter, permease component: LPT family
YP_001156247.1	KEGG: bxe:Bxe_A1565 hypothetical protein
YP_001156248.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: bam:Bamb_2153 single-stranded-DNA-specific exonuclease RecJ
YP_001156249.1	TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: rme:Rmet_1036 peptide chain release factor 2
YP_001156250.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001156252.1	PFAM: OmpA/MotB domain protein; KEGG: bbr:BB4238  peptidoglycan-associated lipoprotein
YP_001156254.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rpe:RPE_3624 cysteine synthase A
YP_001156255.1	KEGG: rfr:Rfer_2202 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_001156256.1	PFAM: Disulphide bond formation protein DsbB; KEGG: reh:H16_A2110 disulfide bond formation protein
YP_001156257.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rso:RSc1305 probable ferredoxin--NADP reductase oxidoreductase
YP_001156258.1	PFAM: protein of unknown function DUF81; KEGG: reh:H16_A3000 predicted permease
YP_001156259.1	KEGG: reu:Reut_A2694 phosphoadenosine phosphosulfate reductase; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase
YP_001156260.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001156261.1	KEGG: bte:BTH_I0818 sulfate adenylyltransferase, subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding
YP_001156262.1	KEGG: rme:Rmet_1695 hypothetical protein
YP_001156263.1	KEGG: mca:MCA0470 hypothetical protein
YP_001156264.1	KEGG: reu:Reut_A3082 cytochrome c, class I
YP_001156265.1	PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: reu:Reut_A3083 twin-arginine translocation pathway signal
YP_001156266.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: mpt:Mpe_A2257  ferredoxin (2Fe-2S) protein
YP_001156267.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_001156268.1	TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: cvi:CV1091 chaperone protein hscB
YP_001156269.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: bte:BTH_I1877 iron-sulfur cluster assembly protein IscA
YP_001156270.1	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: rso:RSc1020 probable nifU protein
YP_001156271.1	TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bxe:Bxe_A1553 cysteine desulfurase IscS
YP_001156272.1	TIGRFAM:  transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: rso:RSc1018 hypothetical protein
YP_001156273.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001156274.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_001156275.1	TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: reh:H16_A1150 intracellular poly(3-hydroxybutyrate) depolymerase
YP_001156276.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: rso:RSc1006 probable ferredoxin [4Fe-4S] protein
YP_001156277.1	TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: reh:H16_A1147 endonuclease III protein
YP_001156278.1	KEGG: reu:Reut_A1043 hypothetical protein
YP_001156279.1	PFAM: protein of unknown function DUF35; KEGG: rpd:RPD_3114 protein of unknown function DUF35
YP_001156280.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_001156281.1	KEGG: rme:Rmet_3668 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_001156282.1	KEGG: bpe:BP0221 3-oxoadipate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_001156283.1	PFAM: histidine triad (HIT) protein; KEGG: bch:Bcen2424_2734 histidine triad (HIT) protein
YP_001156284.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: aav:Aave_2860 isocitrate lyase
YP_001156285.1	PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1964 major facilitator superfamily MFS_1
YP_001156286.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0585 uncharacterized protein UPF0065
YP_001156287.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: mpt:Mpe_A2215 hypothetical protein
YP_001156288.1	KEGG: dar:Daro_1405 TPR repeat
YP_001156289.1	PFAM: cytochrome C biogenesis protein; KEGG: rfr:Rfer_0038 cytochrome c biogenesis protein
YP_001156290.1	TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rfr:Rfer_0039 periplasmic protein thiol
YP_001156291.1	TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: dar:Daro_3996 cytochrome c-type biogenesis protein CcmF
YP_001156292.1	PFAM: CcmE/CycJ protein; KEGG: rfr:Rfer_0041 CcmE/CycJ protein
YP_001156293.1	KEGG: rfr:Rfer_0042 heme exporter protein D (CcmD)
YP_001156294.1	TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: net:Neut_0061 heme exporter protein CcmC
YP_001156295.1	TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dar:Daro_3992 cytochrome c-type biogenesis protein CcmB
YP_001156296.1	KEGG: dar:Daro_3991 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001156297.1	PFAM: YceI family protein; KEGG: dar:Daro_2796 YceI
YP_001156298.1	PFAM: YceI family protein; KEGG: cvi:CV3277 hypothetical protein
YP_001156299.1	PFAM: cytochrome B561; KEGG: azo:azo2869 conserved hypothetical cytochrome b561
YP_001156300.1	KEGG: rfr:Rfer_2573  flavodoxin
YP_001156301.1	PFAM: regulatory protein, MarR; KEGG: gvi:glr2761 MarR family transcriptional regulatory protein
YP_001156302.1	PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4324 beta-lactamase-like
YP_001156303.1	KEGG: nmu:Nmul_A1517 hypothetical protein
YP_001156304.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_0197 alcohol dehydrogenase, zinc-binding
YP_001156306.1	KEGG: pol:Bpro_2412 hypothetical protein
YP_001156307.1	PFAM: histone deacetylase superfamily; KEGG: rme:Rmet_1201 histone deacetylase superfamily
YP_001156308.1	KEGG: pna:Pnap_1612 phasin family protein
YP_001156309.1	KEGG: pat:Patl_4149  lipoprotein
YP_001156310.1	KEGG: rme:Rmet_1904 hypothetical protein
YP_001156312.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pau:PA14_01710 alkyl hydroperoxide reductase subunit C
YP_001156313.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: pfo:Pfl_2924 pyridine nucleotide-disulphide oxidoreductase, class-II, active site
YP_001156315.1	KEGG: dar:Daro_2680 hypothetical protein
YP_001156316.1	PFAM: Citrate transporter; Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpe:RPE_2875 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_001156317.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpe:RPE_2876 TRAP dicarboxylate transporter, DctP subunit
YP_001156318.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: vei:Veis_4817 short-chain dehydrogenase/reductase SDR
YP_001156319.1	KEGG: eba:ebA232 ketopantoate reductase ApbA; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein
YP_001156320.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mpt:Mpe_B0554  iron-sulfur oxidoreductase subunit
YP_001156321.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: bbr:BB4318  dioxygenase
YP_001156322.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1715 transcriptional regulator, GntR family
YP_001156323.1	PFAM: class II aldolase/adducin family protein; KEGG: pol:Bpro_4082 class II aldolase/adducin-like
YP_001156324.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4083 transcriptional regulator, LysR family
YP_001156325.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cps:CPS_4050 membrane protein
YP_001156326.1	PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A3248 EphC
YP_001156327.1	PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A3706 ABC branched chain amino acid family transporter, periplasmic ligand binding protein
YP_001156328.1	PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; homoserine dehydrogenase, NAD-binding; SAF domain; KEGG: mpt:Mpe_A3249 hypothetical protein
YP_001156329.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_001156330.1	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: azo:azo1372 probable dihydrolipoamide acetyltransferase
YP_001156331.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: aav:Aave_2309 transcriptional regulator, AsnC family
YP_001156332.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sus:Acid_5492 short-chain dehydrogenase/reductase SDR
YP_001156333.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pfl:PFL_3063 acyl-CoA dehydrogenase
YP_001156334.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pfo:Pfl_2864 enoyl-CoA hydratase/isomerase
YP_001156335.1	KEGG: bxe:Bxe_A3575 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding
YP_001156336.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mag:amb0634 enoyl-CoA hydratase/carnithine racemase
YP_001156337.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase
YP_001156338.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: aav:Aave_2606 transcriptional regulator, LysR family
YP_001156339.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_4345 major facilitator superfamily MFS_1
YP_001156340.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_001156341.1	KEGG: mxa:MXAN_6597 hypothetical protein
YP_001156342.1	PFAM: FMN-binding domain protein; KEGG: rso:RSc0610  signal peptide protein
YP_001156343.1	PFAM: ApbE family lipoprotein; KEGG: rso:RSc0611 probable thiamine biosynthesis lipoprotein ApbE precursor transmembrane
YP_001156344.1	KEGG: saz:Sama_2658 hypothetical protein
YP_001156345.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bam:Bamb_4554 hydroxypyruvate isomerase
YP_001156346.1	KEGG: dar:Daro_3554 hypothetical protein
YP_001156347.1	PFAM: protein of unknown function DUF330; KEGG: rme:Rmet_4087 protein of unknown function DUF330
YP_001156348.1	PFAM: Mammalian cell entry related domain protein; KEGG: bxe:Bxe_A4000  paraquat-inducible protein
YP_001156349.1	PFAM: Paraquat-inducible protein A; KEGG: ppd:Ppro_0402 paraquat-inducible protein A
YP_001156350.1	PFAM: Paraquat-inducible protein A; KEGG: ppd:Ppro_0401 paraquat-inducible protein A
YP_001156352.1	PFAM: Acetamidase/Formamidase; KEGG: syc:syc0006_c probable amidase
YP_001156353.1	KEGG: maq:Maqu_1180 anti-ECFsigma factor, ChrR
YP_001156354.1	PFAM: Choloylglycine hydrolase; KEGG: bmb:BruAb1_1463 choloylglycine hydrolase family protein
YP_001156355.1	KEGG: dar:Daro_1084 conserved hypothetical protein 2001
YP_001156356.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_2636 arsenical-resistance protein ACR3
YP_001156357.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: net:Neut_2262 protein tyrosine phosphatase
YP_001156358.1	PFAM: regulatory protein, ArsR; KEGG: ajs:Ajs_3055 regulatory protein, ArsR
YP_001156359.1	KEGG: bpm:BURPS1710b_3509 hypothetical protein
YP_001156360.1	PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344
YP_001156361.1	PFAM: protein of unknown function DUF344; KEGG: mpt:Mpe_A1572 hypothetical protein
YP_001156362.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: rso:RSc0680 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase transmembrane protein
YP_001156363.1	PFAM: metallophosphoesterase; KEGG: rso:RSc2083 hypothetical protein
YP_001156364.1	PFAM: glycosyl transferase, group 1; KEGG: bte:BTH_I1039 glycosyl transferase, group 1 family protein
YP_001156365.1	PFAM: diacylglycerol kinase; KEGG: reu:Reut_A0939 prokaryotic diacylglycerol kinase
YP_001156366.1	KEGG: rme:Rmet_2176 hypothetical protein
YP_001156367.1	PFAM: Ppx/GppA phosphatase; KEGG: rso:RSc1537 probable exopolyphosphatase
YP_001156368.1	KEGG: pin:Ping_1936 hypothetical protein
YP_001156369.1	PFAM: MgtC/SapB transporter; KEGG: rme:Rmet_5334 MgtC/SapB transporter
YP_001156370.1	PFAM: Alkaline phosphatase; KEGG: eca:ECA4130 alkaline phosphatase
YP_001156371.1	KEGG: syf:Synpcc7942_1504 hypothetical protein
YP_001156372.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sfx:S2710 hypothetical arsenate reductase
YP_001156373.1	PFAM: MgtC/SapB transporter; KEGG: rpe:RPE_2025 MgtC/SapB transporter
YP_001156374.1	TIGRFAM: Lantibiotic regulatory protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: reh:H16_A2438 signal transduction histidine kinase, phosphate regulon sensor PhoR
YP_001156375.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rso:RSc1534 probable phosphate regulon two-component response regulator transcription regulator protein
YP_001156376.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: reh:H16_A2440 phosphate uptake regulator PhoU
YP_001156377.1	KEGG: vei:Veis_1290 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_001156378.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1291 phosphate ABC transporter, inner membrane subunit PstA
YP_001156379.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_1292 phosphate ABC transporter, inner membrane subunit PstC
YP_001156380.1	TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: vei:Veis_1293 phosphate ABC transporter, periplasmic phosphate-binding protein
YP_001156381.1	KEGG: mpt:Mpe_A0231 lipoprotein
YP_001156382.1	KEGG: mpt:Mpe_A0233 hypothetical protein
YP_001156383.1	PFAM:  thiol-disulphide oxidoreductase DCC; KEGG: pme:NATL1_15521 hypothetical protein
YP_001156384.1	KEGG: mmr:Mmar10_1001 short-chain dehydrogenase/reductase SDR
YP_001156385.1	KEGG: vpa:VPA0206 hypothetical protein
YP_001156386.1	PFAM: deoxyribodipyrimidine photolyase-related protein; KEGG: mpt:Mpe_A2055  alpha-deoxyribodipyrimidine photolyase-related protein
YP_001156387.1	KEGG: ilo:IL2050 hypothetical protein
YP_001156388.1	KEGG: syf:Synpcc7942_0436 hypothetical protein
YP_001156389.1	catalyzes the formation of propanoyl-CoA from methylmalonyl-CoA
YP_001156390.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sil:SPO2040 CaiB/BaiF family protein
YP_001156391.1	KEGG: gbe:GbCGDNIH1_1042 hypothetical membrane spanning protein
YP_001156392.1	TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: rpb:RPB_4671 cytochrome d ubiquinol oxidase, subunit II
YP_001156393.1	PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: rpc:RPC_0092 cytochrome bd ubiquinol oxidase, subunit I
YP_001156394.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_001156395.1	KEGG: gbe:GbCGDNIH1_1043 hypothetical protein
YP_001156396.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_001156399.1	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pen:PSEEN2685 cation transporter, CorA family
YP_001156400.1	KEGG: cte:CT0471 hypothetical protein
YP_001156401.1	KEGG: mmr:Mmar10_1749 ion transport 2 domain protein
YP_001156402.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: atc:AGR_pAT_799 hypothetical protein
YP_001156403.1	KEGG: bxe:Bxe_A4172 hypothetical protein
YP_001156404.1	PFAM: superoxide dismutase, copper/zinc binding; KEGG: reu:Reut_B4338 copper/zinc superoxide dismutase
YP_001156405.1	PFAM: Phosphoglycerate mutase; KEGG: maq:Maqu_2185 phosphoglycerate mutase
YP_001156406.1	KEGG: reu:Reut_A2150 hypothetical protein
YP_001156407.1	KEGG: bpa:BPP2035 hypothetical protein
YP_001156408.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bch:Bcen2424_2743 intracellular protease, PfpI family
YP_001156409.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc0020 hypothetical hydroxypyruvate isomerase
YP_001156410.1	PFAM: class II aldolase/adducin family protein; KEGG: csa:Csal_3180 class II aldolase/adducin-like protein
YP_001156411.1	PFAM: type III effector Hrp-dependent outers; KEGG: reu:Reut_A1426 type III effector Hrp-dependent outers
YP_001156412.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_0446 3-hydroxyisobutyrate dehydrogenase
YP_001156413.1	PFAM: major facilitator superfamily MFS_1; KEGG: bpm:BURPS1710b_A0441 major facilitator family transporter
YP_001156414.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rme:Rmet_1834 GntR-like protein
YP_001156415.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: bxe:Bxe_B2168 hypothetical protein
YP_001156416.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: reu:Reut_A2347 protein of unknown function DUF6, transmembrane
YP_001156417.1	PFAM: extracellular solute-binding protein, family 1; KEGG: aav:Aave_3268 extracellular solute-binding protein, family 1
YP_001156418.1	KEGG: mlo:mll1538 hypothetical protein
YP_001156419.1	PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_0115 DsbA oxidoreductase
YP_001156420.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: pae:PA5186 probable iron-containing alcohol dehydrogenase
YP_001156421.1	PFAM: thioesterase superfamily protein; KEGG: rme:Rmet_1202 thioesterase superfamily
YP_001156422.1	KEGG: rpb:RPB_1658 hypothetical protein
YP_001156423.1	PFAM: nitroreductase; KEGG: ter:Tery_2657 nitroreductase
YP_001156424.1	KEGG: eba:ebA4628 excinuclease Cho, similar to DNA polymerase III epsilon subunit family; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Excinuclease ABC, C subunit domain protein; Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_001156425.1	TIGRFAM:  transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tcx:Tcr_0617 transcriptional regulator, BadM/Rrf2 family
YP_001156426.1	KEGG: bch:Bcen2424_1294 hypothetical protein
YP_001156427.1	PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like
YP_001156428.1	KEGG: bxe:Bxe_A0614 hypothetical protein
YP_001156430.1	PFAM: membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); KEGG: rpe:RPE_0518 membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG)
YP_001156431.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: net:Neut_1349 2OG-Fe(II) oxygenase
YP_001156432.1	PFAM: FAD dependent oxidoreductase; KEGG: xcb:XC_2960 hypothetical protein
YP_001156434.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: maq:Maqu_1452 ABC transporter related
YP_001156435.1	PFAM: ABC-2 type transporter; KEGG: mpt:Mpe_A0977 ABC transporter permease
YP_001156436.1	PFAM: protein of unknown function DUF427; KEGG: ana:asl0060 hypothetical protein
YP_001156437.1	KEGG: pol:Bpro_2909  uncharacterized conserved protein
YP_001156438.1	KEGG: pna:Pnap_2927 protein of unknown function DUF323
YP_001156439.1	PFAM: aminotransferase, class I and II; KEGG: sat:SYN_01966 aminotransferase
YP_001156440.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_1646 general substrate transporter
YP_001156441.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ecs:ECs2290 spermidine N1-acetyltransferase
YP_001156442.1	TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reu:Reut_B5495 citrate-proton symport
YP_001156443.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dar:Daro_1079 response regulator receiver:transcriptional regulatory protein, C-terminal
YP_001156444.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Osmosensitive K+ channel His kinase sensor; KEGG: dar:Daro_1080 ATP-binding region, ATPase-like:histidine kinase A, N-terminal:osmosensitive K+ channel His kinase sensor
YP_001156445.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions. The C subunit may be involved in assembly of the KDP complex
YP_001156446.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_001156447.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_001156448.1	KEGG: hne:HNE_0121 hypothetical protein
YP_001156449.1	PFAM: Heavy metal transport/detoxification protein; KEGG: hne:HNE_0122 hypothetical protein
YP_001156450.1	KEGG: hne:HNE_0123 hypothetical protein
YP_001156451.1	KEGG: pna:Pnap_4550 hypothetical protein
YP_001156453.1	KEGG: tbd:Tbd_0610 conserved secreted protein with internal repeats
YP_001156454.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ajs:Ajs_1242 heavy metal translocating P-type ATPase
YP_001156455.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: mpt:Mpe_A1657  transcriptional regulator
YP_001156456.1	KEGG: rme:Rmet_5677 hypothetical protein
YP_001156457.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: reu:Reut_B5655 heavy metal efflux pump CzcA
YP_001156458.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reu:Reut_B5654 secretion protein HlyD
YP_001156462.1	KEGG: tma:TM0686 DNA polymerase III, gamma and tau subunit
YP_001156466.1	PFAM: phage integrase family protein; KEGG: mag:amb3768 integrase
YP_001156468.1	KEGG: mag:amb2118 hypothetical protein
YP_001156471.1	PFAM: phage integrase family protein; KEGG: she:Shewmr4_3198 phage integrase family protein
YP_001156473.1	KEGG: tko:TK0773 predicted ATP-dependent endonuclease, OLD family
YP_001156474.1	KEGG: bps:BPSL3269 hypothetical protein
YP_001156475.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: reh:H16_A2725 DNA-directed RNA polymerase sigma subunit (RpoD)
YP_001156476.1	KEGG: rme:Rmet_2607 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein
YP_001156477.1	PFAM: GatB/Yqey domain protein; KEGG: bur:Bcep18194_B2206 conserved hypothetical protein, GatB/YqeY family
YP_001156478.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001156479.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001156480.1	PFAM: protein of unknown function DUF198; KEGG: reu:Reut_A0883 protein of unknown function DUF198
YP_001156481.1	TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: rme:Rmet_2615 deoxyxylulose-5-phosphate synthase
YP_001156482.1	PFAM: Polyprenyl synthetase; KEGG: reu:Reut_A0881 polyprenyl synthetase
YP_001156483.1	PFAM: Exonuclease VII, small subunit; KEGG: mfa:Mfla_2131 exodeoxyribonuclease VII, small subunit
YP_001156484.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: rme:Rmet_2618 Rieske (2Fe-2S) region
YP_001156485.1	PFAM: Rhodanese domain protein; KEGG: rme:Rmet_2620 rhodanese-like protein
YP_001156486.1	PFAM: zinc/iron permease; KEGG: rso:RSc2227 probable transmembrane protein
YP_001156487.1	PFAM: dienelactone hydrolase; KEGG: reu:Reut_A0875 twin-arginine translocation pathway signal
YP_001156488.1	KEGG: reh:H16_A2741 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2
YP_001156489.1	KEGG: reu:Reut_A0871  transmembrane protein
YP_001156490.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_001156491.1	KEGG: reu:Reut_A0869 probable transmembrane protein
YP_001156492.1	PFAM: UvrD/REP helicase; KEGG: bxe:Bxe_A1337 DNA helicase II protein
YP_001156493.1	TIGRFAM: valyl-tRNA synthetase; KEGG: bte:BTH_I2633 valyl-tRNA synthetase
YP_001156494.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: bch:Bcen2424_1440 UTP-glucose-1-phosphate uridylyltransferase
YP_001156495.1	PFAM: SirA family protein; KEGG: rme:Rmet_0811 SirA-like protein
YP_001156496.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001156497.1	PFAM: protein of unknown function DUF1468; KEGG: bbr:BB4221 hypothetical protein
YP_001156498.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: rme:Rmet_3964 protein of unknown function DUF112, transmembrane
YP_001156499.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001156500.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; Male sterility C-terminal domain; KEGG: mpt:Mpe_A1128  oxidoreductase
YP_001156501.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_001156502.1	DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_001156503.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_2863 ABC transporter-related protein
YP_001156504.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A3027 ABC-type transporter, ATPase component: HAAT family
YP_001156505.1	PFAM: inner-membrane translocator; KEGG: bur:Bcep18194_A5828 ABC branched-chain amino acid family transporter, inner membrane subunit
YP_001156506.1	PFAM: inner-membrane translocator; KEGG: rme:Rmet_2866 inner-membrane translocator
YP_001156507.1	PFAM: Extracellular ligand-binding receptor; KEGG: rme:Rmet_2867 extracellular ligand-binding receptor
YP_001156508.1	KEGG: rme:Rmet_2868 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein
YP_001156509.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: bxe:Bxe_A0819  FkpB-type peptidyl-prolyl cis-transisomerase
YP_001156510.1	PFAM: DNA repair protein RadC; KEGG: eba:ebA840 DNA repair protein, RadC
YP_001156511.1	required for 70S ribosome assembly
YP_001156512.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_001156513.1	PFAM: fatty acid desaturase; KEGG: rso:RSc2450  stearoyl-CoA desaturase oxidoreductase
YP_001156514.1	PFAM: Fmu (Sun) domain protein; KEGG: reh:H16_A3041 tRNA and rRNA cytosine-C5-methylase
YP_001156515.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: bml:BMA10299_A1031 phosphoribosylglycinamide formyltransferase
YP_001156516.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: bpm:BURPS1710b_1124 riboflavin kinase/FAD synthetase
YP_001156517.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001156518.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001156519.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: rme:Rmet_2887 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
YP_001156520.1	catalyzes the formation of dUMP from dUTP
YP_001156521.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: lpp:lpp0188 hypothetical protein
YP_001156522.1	PFAM: sodium:dicarboxylate symporter; KEGG: aha:AHA_2605 proton/sodium-glutamate symport protein
YP_001156523.1	PFAM: fumarate lyase; KEGG: azo:azo0437 probable aspartate ammonia-lyase
YP_001156525.1	KEGG: rme:Rmet_2892 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_001156526.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: bxe:Bxe_A0800  ATP-dependent Clp protease adaptor protein ClpS
YP_001156527.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: rme:Rmet_2894 cold-shock DNA-binding domain protein
YP_001156528.1	PFAM: protein of unknown function DUF192; KEGG: rme:Rmet_2898 protein of unknown function DUF192
YP_001156529.1	KEGG: dar:Daro_3029 protein of unknown function DUF1255
YP_001156530.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_001156531.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001156532.1	KEGG: reh:H16_A3064 hypothetical protein
YP_001156533.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001156534.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: reh:H16_A3066 hypothetical membrane protein in MviN family
YP_001156535.1	KEGG: rso:RSc2558 hypothetical protein
YP_001156536.1	KEGG: rme:Rmet_2907 DedA
YP_001156537.1	KEGG: reu:Reut_A2770 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_001156538.1	KEGG: reu:Reut_A2773 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein
YP_001156539.1	PFAM: protein of unknown function UPF0118; KEGG: rso:RSc2624 probable permease transmembrane transport protein
YP_001156540.1	PFAM: Chromosomal replication initiator, DnaA; KEGG: reu:Reut_A2775 hypothetical protein
YP_001156541.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: rso:RSc2626  hydrolase
YP_001156542.1	TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: rso:RSc2627 probable polynucleotide adenylyltransferase
YP_001156543.1	KEGG: rme:Rmet_2915 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_001156544.1	KEGG: rme:Rmet_2917 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_001156545.1	TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: rme:Rmet_2921 chaperone DnaJ
YP_001156546.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001156547.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_001156548.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_001156549.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001156550.1	PFAM: ATP-NAD/AcoX kinase; KEGG: reu:Reut_A1035 inorganic polyphosphate/ATP-NAD kinase
YP_001156551.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rso:RSc2651 probable DNA repair protein
YP_001156552.1	PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: rso:RSc2656 probable glutamate-ammonia-ligase adenylyltransferase (glutamine-synthetase adenylyltransferase) protein
YP_001156553.1	KEGG: rso:RSc2657 probable transmembrane protein
YP_001156554.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bpe:BP2910  hydrolase
YP_001156555.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rme:Rmet_0991 peptidase U62, modulator of DNA gyrase
YP_001156556.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_001156557.1	TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: rso:RSc2663 hypothetical protein
YP_001156558.1	PFAM: FAD linked oxidase domain protein; KEGG: reh:H16_A3094 glycolate oxidase subunit GlcD
YP_001156559.1	PFAM: FAD linked oxidase domain protein; KEGG: bxe:Bxe_A3979  glycolate oxidase, subunit GlcE
YP_001156560.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: reu:Reut_A2793 4Fe-4S ferredoxin, iron-sulfur binding:protein of unknown function DUF224, cysteine-rich region
YP_001156561.1	PFAM: alanine racemase domain protein; KEGG: bte:BTH_I1288 conserved hypothetical protein TIGR00044
YP_001156562.1	KEGG: azo:azo3466 probable 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_001156563.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: bte:BTH_I1286 4-hydroxybenzoate polyprenyl transferase
YP_001156564.1	catalyzes branch migration in Holliday junction intermediates
YP_001156565.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001156566.1	KEGG: bch:Bcen2424_0722 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase
YP_001156567.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rme:Rmet_2945 preprotein translocase, YajC subunit
YP_001156568.1	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: rso:RSc2715 probable-export membrane protein secd transmembrane
YP_001156569.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001156570.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: reu:Reut_A0747 three-deoxy-D-manno-octulosonic-acid transferase, N-terminal
YP_001156571.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001156572.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: aav:Aave_4668 glutathione S-transferase, N-terminal domain
YP_001156573.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001156574.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: reh:H16_A3128 NAD(P) transhydrogenase subunit alpha 1
YP_001156575.1	KEGG: cvi:CV0100 probable transmembrane NAD(P) transhydrogenase transmembrane protein
YP_001156576.1	PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: cvi:CV0099 NAD(P) transhydrogenase, beta subunit
YP_001156577.1	KEGG: bxe:Bxe_B1588 hypothetical protein
YP_001156578.1	PFAM: glycosyl transferase, family 11; KEGG: gfo:orf553 alpha-1,2-fucosyltransferase
YP_001156579.1	KEGG: bba:Bd1672  N-acetylglucosaminyltransferase
YP_001156580.1	KEGG: bxe:Bxe_B1588 hypothetical protein
YP_001156581.1	KEGG: mva:Mvan_3455 conserved hypothetical protein
YP_001156582.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001156583.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001156585.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: reh:H16_B1086 response regulator, NarL-family
YP_001156586.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: ppu:PP_3413 sensor histidine kinase/response regulator
YP_001156587.1	TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: reu:Reut_A0564 peptidase S13, D-Ala-D-Ala carboxypeptidase C
YP_001156588.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: reh:H16_A0572  translation factor (SUA5)
YP_001156589.1	KEGG: reh:H16_A0571 phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp
YP_001156590.1	KEGG: pna:Pnap_3863 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_001156591.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001156592.1	class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis
YP_001156593.1	PFAM: pyruvate kinase; KEGG: rso:RSc0572 pyruvate kinase
YP_001156594.1	PFAM: phosphoglycerate kinase; KEGG: mpt:Mpe_A0289 phosphoglycerate kinase
YP_001156595.1	TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase, class IV; KEGG: rme:Rmet_0493 branched-chain amino acid aminotransferase
YP_001156596.1	KEGG: reu:Reut_A0546 hypothetical protein
YP_001156597.1	TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: reh:H16_A0559 ADP-heptose:LPS heptosyltransferase III
YP_001156598.1	KEGG: reu:Reut_A0544 hypothetical protein
YP_001156599.1	KEGG: rso:RSc0562 hypothetical protein
YP_001156600.1	PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rme:Rmet_0487 peptidase M48, Ste24p
YP_001156601.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: reu:Reut_A0540 molybdopterin cofactor biosynthesis MoaC region
YP_001156602.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_0301 TPR repeat
YP_001156603.1	PFAM: glycosyl transferase, group 1
YP_001156604.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein
YP_001156605.1	KEGG: maq:Maqu_2680 fimbrial protein pilin
YP_001156606.1	PFAM: Integral membrane protein TerC; KEGG: reh:H16_A0549 integral membrane protein
YP_001156607.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_001156608.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_001156609.1	PFAM: regulatory protein RecX; KEGG: bam:Bamb_2698 regulatory protein RecX
YP_001156610.1	KEGG: rme:Rmet_0466 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_001156611.1	KEGG: ppd:Ppro_0125 hypothetical protein
YP_001156616.1	PFAM: phage integrase family protein; KEGG: mag:amb4292 integrase
YP_001156617.1	KEGG: pcr:Pcryo_0936 hypothetical protein
YP_001156621.1	KEGG: mag:amb2118 hypothetical protein
YP_001156622.1	PFAM: phage integrase family protein; KEGG: she:Shewmr4_3198 phage integrase family protein
YP_001156624.1	KEGG: gfo:orf2569 secreted protein
YP_001156625.1	PFAM: MOSC domain containing protein; KEGG: reu:Reut_A3423 MOSC
YP_001156626.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aav:Aave_4345 major facilitator superfamily MFS_1
YP_001156627.1	PFAM: protein of unknown function UPF0126; KEGG: cps:CPS_4741 hypothetical protein
YP_001156628.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: reh:H16_A0362 maleylacetoacetate isomerase
YP_001156629.1	KEGG: pol:Bpro_3188 transferase hexapeptide repeat
YP_001156630.1	KEGG: mca:MCA0470 hypothetical protein
YP_001156631.1	KEGG: mca:MCA2026 hypothetical protein
YP_001156632.1	PFAM: OsmC family protein; KEGG: dar:Daro_2717 OsmC-like protein
YP_001156633.1	PFAM: Rhodanese domain protein; KEGG: mag:amb0217 rhodanese-related sulfurtransferase
YP_001156634.1	PFAM: protein of unknown function DUF1504; KEGG: pna:Pnap_2982 protein of unknown function DUF1504
YP_001156635.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001156636.1	PFAM: protein of unknown function UPF0054; KEGG: bxe:Bxe_A0628 protein of unknown function UPF0054
YP_001156637.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: rso:RSc0528 conserved hypothetical protein
YP_001156638.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rme:Rmet_0449 apolipoprotein N-acyltransferase
YP_001156639.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001156640.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001156641.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase, central region; KEGG: reu:Reut_A0506 hypothetical protein
YP_001156642.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: rme:Rmet_0444 phospholipid/glycerol acyltransferase
YP_001156643.1	TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dar:Daro_3656 rRNA 16S rRNA dimethylase
YP_001156644.1	KEGG: bam:Bamb_2761 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_001156645.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rso:RSc0516 probable peptidyl-prolyl cis-trans isomerase (rotamase C) protein
YP_001156646.1	PFAM: Organic solvent tolerance protein; KEGG: reu:Reut_A0497 organic solvent tolerance protein
YP_001156647.1	PFAM: aminoglycoside phosphotransferase; KEGG: rme:Rmet_0435 aminoglycoside phosphotransferase
YP_001156648.1	PFAM: Nucleotidyl transferase; KEGG: nmu:Nmul_A0127 nucleotidyl transferase
YP_001156649.1	PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rso:RSc0509 probable Xaa-Pro aminopeptidase (aminopeptidase P II) protein
YP_001156650.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: bam:Bamb_0587 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
YP_001156651.1	TIGRFAM:  TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: bxe:Bxe_A0621 dihydrouridine synthase TIM-barrel protein nifR3
YP_001156652.1	PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family
YP_001156653.1	involved in de novo purine biosynthesis
YP_001156654.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_001156655.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001156656.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001156657.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001156658.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_001156659.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rso:RSc0494 hypothetical protein
YP_001156660.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_001156661.1	PFAM: ribosomal protein S9; KEGG: rme:Rmet_0411 ribosomal protein S9
YP_001156662.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001156663.1	PFAM: OsmC family protein; KEGG: bxe:Bxe_A0605  OsmC-like protein
YP_001156664.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001156665.1	PFAM: MOFRL domain protein; KEGG: reu:Reut_A0463 hydroxypyruvate reductase
YP_001156666.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: reu:Reut_A0452 ABC transporter, transmembrane region:ABC transporter related
YP_001156667.1	PFAM: NUDIX hydrolase; KEGG: bte:BTH_I0561 dATP pyrophosphohydrolase
YP_001156668.1	TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); GAD domain protein; tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: rso:RSc0466 probable aspartyl-tRNA synthetase
YP_001156669.1	PFAM: protein of unknown function DUF502; KEGG: rfr:Rfer_1296 protein of unknown function DUF502
YP_001156670.1	TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: rso:RSc0461 probable ubiquinone biosynthesis transmembrane protein
YP_001156671.1	PFAM: protein of unknown function DUF1243; KEGG: bxe:Bxe_A4048 hypothetical protein
YP_001156672.1	PFAM: import inner membrane translocase, subunit Tim44; KEGG: reh:H16_A0446 hypothetical membrane spanning protein
YP_001156673.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_0371 ubiquinone/menaquinone biosynthesis methyltransferases
YP_001156674.1	PFAM: protein of unknown function DUF971; KEGG: ajs:Ajs_0866 protein of unknown function DUF971
YP_001156675.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD linked oxidase domain protein; KEGG: reu:Reut_A0427 protein of unknown function DUF224, cysteine-rich region:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal
YP_001156676.1	TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: reh:H16_A0427 threonine dehydratase
YP_001156677.1	PFAM: 5-nucleotidase; KEGG: mpt:Mpe_A3141 5-nucleotidase
YP_001156678.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_001156679.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: rme:Rmet_0315 single-strand binding protein
YP_001156680.1	PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A0368 major facilitator superfamily MFS_1
YP_001156681.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: rso:RSc0420 probable excinuclease ABC subunit A (DNA repair ATP-binding) ABC transporter protein
YP_001156682.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: reh:H16_A0392 Kef-type K+ transport system, membrane and NAD-binding component
YP_001156683.1	KEGG: bxe:Bxe_A4117 KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_001156684.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: rso:RSc0412  3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
YP_001156685.1	PFAM: protein of unknown function DUF1239; KEGG: rme:Rmet_0306 protein of unknown function DUF1239
YP_001156686.1	PFAM: OstA family protein; KEGG: reu:Reut_A0357 OstA-like protein
YP_001156687.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: reh:H16_A0388 ABC-type transporter, ATPase component: HAAT family
YP_001156688.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: bte:BTH_I0485 ribosomal subunit interface protein
YP_001156689.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: rme:Rmet_0300 PTS IIA-like nitrogen-regulatory protein PtsN
YP_001156690.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001156691.1	PFAM: Uncharacterised P-loop ATPase UPF0042; KEGG: rso:RSc0403 hypothetical protein
YP_001156692.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: bpm:BURPS1710b_0759 A/G-specific adenine glycosylase
YP_001156693.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_001156694.1	PFAM: outer membrane lipoprotein LolB; KEGG: bam:Bamb_2859 tetratricopeptide TPR_2 repeat protein
YP_001156695.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001156696.1	KEGG: rso:RSc0395 probable ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_001156697.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001156698.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001156699.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dar:Daro_3724 4Fe-4S ferredoxin, iron-sulfur binding
YP_001156700.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001156701.1	TIGRFAM:  methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: bur:Bcep18194_A6138 hypothetical protein
YP_001156702.1	PFAM: peptidase M16 domain protein; KEGG: rme:Rmet_0283 peptidase M16-like protein
YP_001156703.1	PFAM: peptidase M16 domain protein; KEGG: rme:Rmet_0282 peptidase M16-like protein
YP_001156704.1	KEGG: eba:ebA1393 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_001156705.1	TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: bch:Bcen2424_2815 RNA polymerase, sigma 32 subunit, RpoH
YP_001156706.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: rme:Rmet_0271 electron transport protein SCO1/SenC
YP_001156707.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_001156708.1	PFAM: cytochrome oxidase assembly; KEGG: reh:H16_A0351  hemeA synthase
YP_001156709.1	KEGG: reu:Reut_A0321 probable transmembrane protein
YP_001156710.1	KEGG: bam:Bamb_2897 SURF1 family protein
YP_001156711.1	KEGG: bur:Bcep18194_A6171 hypothetical protein
YP_001156712.1	PFAM: cytochrome c oxidase, subunit III; KEGG: bxe:Bxe_A4167  cytochrome c oxidase, subunit III
YP_001156713.1	KEGG: rso:RSc0366 probable transmembrane protein
YP_001156714.1	PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: rme:Rmet_0263 cytochrome c oxidase assembly protein CtaG/Cox11
YP_001156715.1	PFAM: cytochrome c oxidase, subunit I; KEGG: rso:RSc0363 probable cytochrome C oxidase polypeptide I (cytochrome AA3 subunit 1) transmembrane protein
YP_001156716.1	PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: reu:Reut_A0314 cytochrome c oxidase, subunit II:cytochrome c, class I:cytochrome c oxidase subunit II, transmembrane region
YP_001156717.1	PFAM: Methyltransferase type 11; KEGG: reh:H16_A0340 predicted methyltransferase
YP_001156718.1	KEGG: nmu:Nmul_A1128 phosphoribosyltransferase
YP_001156719.1	TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: rso:RSc0358  tRNA/rRNA methyltransferase
YP_001156720.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001156721.1	TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: reh:H16_A0335 preprotein translocase subunit SecB
YP_001156722.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: bxe:Bxe_A4179  glutaredoxin 3
YP_001156723.1	PFAM: Rhodanese domain protein; KEGG: bxe:Bxe_A4180  rhodanese-related sulfurtransferase
YP_001156724.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_001156725.1	KEGG: reh:H16_A0331 C-terminal processing peptidase-3, periplasmic; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_001156726.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rfr:Rfer_1307 UBA/ThiF-type NAD/FAD binding protein
YP_001156727.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: reh:H16_A0326 phosphoenolpyruvate-protein kinase (PTS system EI component)
YP_001156728.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: azo:azo3781  phosphocarrier protein HPr
YP_001156729.1	PFAM: PTS system fructose subfamily IIA component; KEGG: reu:Reut_A0295 PTS system fructose subfamily IIA component
YP_001156730.1	KEGG: pna:Pnap_3736 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp
YP_001156731.1	TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase GshA; KEGG: reu:Reut_A0293 glutamate--cysteine ligase GshA
YP_001156732.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: reu:Reut_A0292 ammonium transporter
YP_001156733.1	PFAM: nitrogen regulatory protein P-II; KEGG: reu:Reut_A0291 nitrogen regulatory protein P-II
YP_001156734.1	KEGG: rso:RSc0341 probable signal peptide protein
YP_001156735.1	PFAM: protein of unknown function DUF526; KEGG: reh:H16_A0318 hypothetical protein
YP_001156736.1	KEGG: reh:H16_A0308 hypothetical protein
YP_001156737.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001156738.1	lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism
YP_001156739.1	PFAM: protein of unknown function DUF493; KEGG: pna:Pnap_0245 protein of unknown function DUF493
YP_001156740.1	KEGG: reh:H16_A0301 predicted hydrolase of the alpha/beta superfamily
YP_001156741.1	KEGG: neu:NE1874  ferredoxin 2fe-2s protein
YP_001156742.1	PFAM: VanZ family protein; KEGG: reh:H16_A0130 predicted integral membrane protein
YP_001156743.1	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: reh:H16_A0135 biotin-(acetyl-CoA carboxylase) ligase
YP_001156744.1	TIGRFAM:  transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; KEGG: eba:ebA4111 transcriptional regulator, Bvg acessory factor
YP_001156745.1	TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: reh:H16_A0138 D-beta-D-heptose 1-phosphate adenylyltransferase
YP_001156746.1	PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase
YP_001156747.1	PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: mpt:Mpe_A0236  dehydrogenase
YP_001156748.1	PFAM: protein of unknown function DUF1365; KEGG: mpt:Mpe_A0235 hypothetical protein
YP_001156749.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mpt:Mpe_A0234 cyclopropane-fatty-acyl-phospholipid synthase
YP_001156750.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azo:azo3315 short-chain dehydrogenase family protein
YP_001156751.1	PFAM: DSBA oxidoreductase; KEGG: rme:Rmet_0098 DsbA oxidoreductase
YP_001156752.1	PFAM: Sporulation domain protein; KEGG: ajs:Ajs_0344 sporulation domain protein
YP_001156753.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001156754.1	KEGG: bxe:Bxe_A4244 hypothetical protein
YP_001156755.1	KEGG: bch:Bcen2424_2917 methionine synthase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein
YP_001156756.1	PFAM: homocysteine S-methyltransferase; KEGG: rme:Rmet_0087 homocysteine S-methyltransferase
YP_001156757.1	PFAM: beta-lactamase domain protein; KEGG: bbr:BB4943 metallo-beta-lactamase family protein
YP_001156758.1	PFAM: protein of unknown function DUF1289; KEGG: reh:H16_A0189 predicted Fe-S protein
YP_001156759.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pfo:Pfl_2939 zinc-containing alcohol dehydrogenase superfamily
YP_001156761.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: bpm:BURPS1710b_1057 flavin reductase domain protein
YP_001156762.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bxe:Bxe_A2053  glutathione S-transferase
YP_001156763.1	PFAM: acriflavin resistance protein; KEGG: cvi:CV1626 probable multidrug efflux protein
YP_001156764.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cvi:CV1627 acriflavin resistance protein E precursor; probable RND efflux membrane fusion protein precursor
YP_001156765.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_0766 RND efflux system, outer membrane lipoprotein, NodT family
YP_001156766.1	TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: reh:H16_A0263 glutamine-fructose-6-phosphate transaminase (isomerizing)
YP_001156767.1	KEGG: reh:H16_A0262 UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate acetyltransferase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase
YP_001156768.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_001156769.1	KEGG: reh:H16_A0259 dihydroneopterin aldolase
YP_001156770.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rme:Rmet_0182 short-chain dehydrogenase/reductase SDR
YP_001156771.1	PFAM: protein of unknown function DUF185; KEGG: bam:Bamb_3024 protein of unknown function DUF185
YP_001156772.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: bpm:BURPS1710b_0457 tRNA nucleotidyltransferase
YP_001156773.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; KEGG: rso:RSc0087  NADH-ubiquinone oxidoreductase oxidoreductase
YP_001156774.1	PFAM: Lytic transglycosylase, catalytic; KEGG: reu:Reut_A0219 lytic transglycosylase, catalytic
YP_001156775.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: reu:Reut_A0218 5-formyltetrahydrofolate cyclo-ligase
YP_001156776.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: rfr:Rfer_0654 5,10-methylenetetrahydrofolate reductase
YP_001156777.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_001156778.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001156779.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: reu:Reut_A1946 lipid A biosynthesis acyltransferase
YP_001156780.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: reh:H16_A0228 lauroyl/myristoyl acyltransferase
YP_001156781.1	PFAM: diaminopimelate epimerase; KEGG: reh:H16_A0227 diaminopimelate epimerase
YP_001156782.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001156783.1	KEGG: rme:Rmet_0149 exodeoxyribonuclease III (xth); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_001156784.1	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_0199 major facilitator superfamily MFS_1
YP_001156785.1	TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: reu:Reut_A0187 methionine biosynthesis MetW
YP_001156786.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_001156787.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_001156788.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_001156789.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: reu:Reut_A0162 Zn-finger, prokaryotic DksA/TraR C4 type
YP_001156790.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rso:RSc0047 hypothetical protein
YP_001156791.1	PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rso:RSc0052 probable site specific integrase/recombinase
YP_001156792.1	PFAM: protein of unknown function DUF484; KEGG: rso:RSc0053 hypothetical protein
YP_001156793.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001156794.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001156795.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: rme:Rmet_0050 glutamyl-tRNA(Gln) amidotransferase, C subunit
YP_001156796.1	functions in MreBCD complex in some organisms
YP_001156797.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001156798.1	KEGG: reh:H16_A0115 rod shape-determining protein MreD
YP_001156799.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rme:Rmet_0054 penicillin-binding protein, transpeptidase
YP_001156800.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: rme:Rmet_0055 rod shape-determining protein RodA
YP_001156801.1	PFAM: histone family protein DNA-binding protein; KEGG: rme:Rmet_4749 histone-like DNA-binding protein
YP_001156802.1	KEGG: gme:Gmet_2579 hypothetical protein
YP_001156803.1	PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: mpt:Mpe_A2325 hypothetical protein
YP_001156804.1	PFAM: protein of unknown function DUF167; KEGG: dar:Daro_3887 conserved hypothetical protein 251
YP_001156805.1	PFAM: carbonic anhydrase; KEGG: xfa:XF0880 carbonic anhydrase
YP_001156806.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: reh:H16_A0228 lauroyl/myristoyl acyltransferase
YP_001156807.1	PFAM: metallophosphoesterase; KEGG: mpt:Mpe_A3031  serine/threonine phosphatase
YP_001156808.1	PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ade:Adeh_3699 serine/threonine protein kinase
YP_001156809.1	involved in the transport of C4-dicarboxylates across the membrane
YP_001156810.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bbr:BB2525  RNA pseudouridylate synthase
YP_001156811.1	TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; KEGG: neu:NE2481 peptide chain release factor RF-3
YP_001156812.1	KEGG: rfr:Rfer_3643 hypothetical protein
YP_001156813.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pmu:PM1553 unknown
YP_001156814.1	PFAM: Phosphoglycerate mutase; KEGG: cvi:CV3211 phosphoglycerate mutase 2
YP_001156815.1	PFAM: MltA-interacting MipA family protein; KEGG: par:Psyc_1656  outer membrane protein/scaffolding protein MipA
YP_001156816.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4413 hypothetical protein
YP_001156818.1	PFAM: alpha/beta hydrolase fold; KEGG: mag:amb0624 predicted hydrolase or acyltransferase
YP_001156819.1	KEGG: vch:VC1560 catalase/peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase
YP_001156820.1	KEGG: vpa:VPA0752 glutathione S-transfersae-related protein
YP_001156821.1	KEGG: pol:Bpro_4516 haloacid dehalogenase, type II; TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase
YP_001156822.1	PFAM: protein of unknown function DUF486; KEGG: neu:NE1692 hypothetical protein
YP_001156823.1	KEGG: bja:blr3488 hypothetical protein
YP_001156825.1	KEGG: bja:bll2644 hypothetical protein
YP_001156826.1	PFAM: protein of unknown function DUF1275; KEGG: pol:Bpro_0910 protein of unknown function DUF1275
YP_001156827.1	PFAM: cyclase/dehydrase; KEGG: plt:Plut_0548 hypothetical protein
YP_001156828.1	PFAM: Catalase domain protein; KEGG: dar:Daro_0523 catalase, N-terminal
YP_001156829.1	SMART: CHRD domain containing protein; KEGG: nmu:Nmul_A1716 CHRD
YP_001156830.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ajs:Ajs_2254 transcriptional regulator, LysR family
YP_001156831.1	PFAM: protein of unknown function DUF897; KEGG: mpt:Mpe_A0139 hypothetical protein
YP_001156832.1	KEGG: gvi:glr2085 hypothetical protein
YP_001156833.1	PFAM: Uracil-DNA glycosylase superfamily; KEGG: ilo:IL2499 uracil-DNA glycosylase
YP_001156834.1	PFAM: Ion transport 2 domain protein, ; K+ channel, inward rectifier, conserved region 2 domain protein; KEGG: ava:Ava_0532 K+ channel, inward rectifier
YP_001156835.1	PFAM: Patatin; KEGG: aau:AAur_3745 hypothetical protein
YP_001156836.1	KEGG: pin:Ping_2941 hypothetical protein
YP_001156838.1	PFAM: phage integrase family protein; KEGG: mag:amb3688 integrase
YP_001156840.1	KEGG: mag:amb4289 hypothetical protein
YP_001156841.1	SMART: AAA ATPase; KEGG: cel:F31E3.3 RFC (DNA replication factor) family
YP_001156842.1	PFAM: phage integrase family protein; KEGG: she:Shewmr4_3198 phage integrase family protein
YP_001156845.1	KEGG: rme:Rmet_5343 hypothetical protein
YP_001156846.1	KEGG: pna:Pnap_4675 hypothetical protein
YP_001156848.1	PFAM: OsmC family protein; protein of unknown function DUF181; KEGG: rme:Rmet_4822 protein of unknown function DUF181
YP_001156849.1	PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: bxe:Bxe_A4409 two component transcriptional regulator, fis family
YP_001156850.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: reu:Reut_A3403 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal
YP_001156851.1	KEGG: rme:Rmet_3561  periplasmic ligand-binding sensor protein
YP_001156852.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: rme:Rmet_3562 sun protein
YP_001156853.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: bur:Bcep18194_A6477 methionyl-tRNA formyltransferase
YP_001156854.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001156855.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: chy:CHY_1795  DNA proccessing protein DprA
YP_001156856.1	decatenates replicating daughter chromosomes
YP_001156857.1	PFAM: FAD dependent oxidoreductase; KEGG: rso:RSc1709  lipoprotein
YP_001156858.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_001156859.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001156860.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: reh:H16_A3744 inner membrane protein
YP_001156861.1	PFAM: protein of unknown function DUF37; KEGG: cch:Cag_2031 protein of unknown function DUF37
YP_001156862.1	TIGRFAM: ribonuclease P protein component
YP_001156863.1	in Escherichia coli transcription of this gene is enhanced by polyamines