-- dump date 20140619_235328 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_904360.1 34539881 2551501 1..1422 1 NC_002950.2 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1422 dnaA 2551501 dnaA Porphyromonas gingivalis W83 chromosomal replication initiation protein NP_904360.1 1 D 242619 CDS NP_904361.1 34539882 2551923 1435..2007 1 NC_002950.2 similar to GB:U03884, GB:U12541, GB:U12542, GB:U12544, GB:U12545, GB:S78737, GB:U12543, SP:P48048, PID:1698659, PID:1698660, PID:1698661, PID:1698662, PID:1698663, PID:1698664, PID:433143, PID:529313, PID:529315, PID:529317, PID:639911, and PID:639912; identified by sequence similarity; putative; hexapeptide transferase 2007 2551923 PG0002 Porphyromonas gingivalis W83 hexapeptide transferase NP_904361.1 1435 D 242619 CDS NP_904362.1 34539883 2551834 complement(2009..3028) 1 NC_002950.2 similar to GB:L22208, GB:Z24754, PID:415596, and PID:415918; identified by sequence similarity; putative; hypothetical protein 3028 2551834 PG0003 Porphyromonas gingivalis W83 hypothetical protein NP_904362.1 2009 R 242619 CDS NP_904363.1 34539884 2552205 3108..3812 1 NC_002950.2 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 3812 2552205 PG0004 Porphyromonas gingivalis W83 NAD-dependent deacetylase NP_904363.1 3108 D 242619 CDS NP_904364.1 34539885 2551831 complement(3887..5041) 1 NC_002950.2 hypothetical protein 5041 2551831 PG0005 Porphyromonas gingivalis W83 hypothetical protein NP_904364.1 3887 R 242619 CDS NP_904365.1 34539886 2552738 complement(5094..6422) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein 6422 2552738 PG0006 Porphyromonas gingivalis W83 MATE efflux family protein NP_904365.1 5094 R 242619 CDS NP_904366.1 34539887 2551790 complement(6845..7003) 1 NC_002950.2 hypothetical protein 7003 2551790 PG0007 Porphyromonas gingivalis W83 hypothetical protein NP_904366.1 6845 R 242619 CDS NP_904367.1 34539888 2552719 complement(7175..8113) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00665; ISPg5 transposase Orf2 8113 2552719 PG0008 Porphyromonas gingivalis W83 ISPg5 transposase Orf2 NP_904367.1 7175 R 242619 CDS NP_904368.1 34539889 2551768 complement(8167..8556) 1 NC_002950.2 ISPg5 transposase Orf1 8556 2551768 PG0009 Porphyromonas gingivalis W83 ISPg5 transposase Orf1 NP_904368.1 8167 R 242619 CDS NP_904369.1 34539890 2551760 8915..11494 1 NC_002950.2 similar to GB:J05272, SP:P20839, PID:307067, GB:J05272, SP:P20839, and PID:307067; identified by sequence similarity; putative; ATP-dependent Clp protease, ATP-binding subunit ClpC 11494 clpC 2551760 clpC Porphyromonas gingivalis W83 ATP-dependent Clp protease, ATP-binding subunit ClpC NP_904369.1 8915 D 242619 CDS NP_904370.1 34539891 2551515 11634..14645 1 NC_002950.2 glycosyl hydrolase 14645 2551515 PG0011 Porphyromonas gingivalis W83 glycosyl hydrolase NP_904370.1 11634 D 242619 CDS NP_904371.1 34539892 2551828 14693..15721 1 NC_002950.2 similar to GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, PID:1786365, GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, and PID:1786365; identified by sequence similarity; putative; L-threonine-O-3-phosphate decarboxylase 15721 2551828 PG0012 Porphyromonas gingivalis W83 L-threonine-O-3-phosphate decarboxylase NP_904371.1 14693 D 242619 CDS NP_904372.1 34539893 2553296 15731..16501 1 NC_002950.2 similar to GB:Z33042, and GB:Z33042; identified by sequence similarity; putative; hypothetical protein 16501 2553296 PG0013 Porphyromonas gingivalis W83 hypothetical protein NP_904372.1 15731 D 242619 CDS NP_904373.1 34539894 2552746 17087..18436 1 NC_002950.2 sigma-54 dependent DNA-binding response regulator 18436 2552746 PG0016 Porphyromonas gingivalis W83 sigma-54 dependent DNA-binding response regulator NP_904373.1 17087 D 242619 CDS NP_904374.1 34539895 2551778 18447..19784 1 NC_002950.2 similar to GB:L29642, and PID:461402; identified by sequence similarity; putative; sensor histidine kinase 19784 2551778 PG0017 Porphyromonas gingivalis W83 sensor histidine kinase NP_904374.1 18447 D 242619 CDS NP_904375.1 34539896 2551887 19788..22034 1 NC_002950.2 hypothetical protein 22034 2551887 PG0018 Porphyromonas gingivalis W83 hypothetical protein NP_904375.1 19788 D 242619 CDS NP_904376.1 34539897 2551769 22180..23337 1 NC_002950.2 ISPg4 transposase 23337 2551769 PG0019 Porphyromonas gingivalis W83 ISPg4 transposase NP_904376.1 22180 D 242619 CDS NP_904377.1 34539898 2552413 23522..24226 1 NC_002950.2 MarR family transcriptional regulator 24226 2552413 PG0020 Porphyromonas gingivalis W83 MarR family transcriptional regulator NP_904377.1 23522 D 242619 CDS NP_904378.1 34539899 2551464 complement(24212..25213) 1 NC_002950.2 NifR3 family TIM-barrel protein 25213 2551464 PG0021 Porphyromonas gingivalis W83 NifR3 family TIM-barrel protein NP_904378.1 24212 R 242619 CDS NP_904379.1 34539900 2551516 complement(25210..26886) 1 NC_002950.2 sulfate permease 26886 2551516 PG0022 Porphyromonas gingivalis W83 sulfate permease NP_904379.1 25210 R 242619 CDS NP_904380.1 34539901 2551876 27872..28528 1 NC_002950.2 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 28528 2551876 PG0024 Porphyromonas gingivalis W83 redox-sensing transcriptional repressor Rex NP_904380.1 27872 D 242619 CDS NP_904381.1 34539902 2551787 28597..29256 1 NC_002950.2 fumarylacetoacetate hydrolase 29256 2551787 PG0025 Porphyromonas gingivalis W83 fumarylacetoacetate hydrolase NP_904381.1 28597 D 242619 CDS NP_904382.1 34539903 2552655 29374..32745 1 NC_002950.2 hypothetical protein 32745 2552655 PG0026 Porphyromonas gingivalis W83 hypothetical protein NP_904382.1 29374 D 242619 CDS NP_904383.1 34539904 2553169 32821..33996 1 NC_002950.2 hypothetical protein 33996 2553169 PG0027 Porphyromonas gingivalis W83 hypothetical protein NP_904383.1 32821 D 242619 CDS NP_904384.1 34539905 2551764 34003..34491 1 NC_002950.2 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 34491 ispF 2551764 ispF Porphyromonas gingivalis W83 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NP_904384.1 34003 D 242619 CDS NP_904385.1 34539906 2552653 35986..36462 1 NC_002950.2 cytidine deaminase 36462 2552653 PG0030 Porphyromonas gingivalis W83 cytidine deaminase NP_904385.1 35986 D 242619 CDS NP_904386.1 34539907 2551775 complement(36995..37669) 1 NC_002950.2 hypothetical protein 37669 2551775 PG0031 Porphyromonas gingivalis W83 hypothetical protein NP_904386.1 36995 R 242619 CDS NP_904387.1 34539908 2551507 complement(37717..40302) 1 NC_002950.2 beta-mannosidase 40302 2551507 PG0032 Porphyromonas gingivalis W83 beta-mannosidase NP_904387.1 37717 R 242619 CDS NP_904388.1 34539909 2553297 complement(40332..41630) 1 NC_002950.2 RmuC domain-containing protein 41630 2553297 PG0033 Porphyromonas gingivalis W83 RmuC domain-containing protein NP_904388.1 40332 R 242619 CDS NP_904389.1 34539910 2551900 complement(42325..42639) 1 NC_002950.2 similar to SP:P22527, PID:1181554, and PID:43612; identified by sequence similarity; putative; thioredoxin 42639 trx 2551900 trx Porphyromonas gingivalis W83 thioredoxin NP_904389.1 42325 R 242619 CDS NP_904390.1 34539911 2551752 complement(42688..46374) 1 NC_002950.2 similar to SP:P12743; identified by sequence similarity; putative; DNA polymerase III subunit alpha 46374 dnaE 2551752 dnaE Porphyromonas gingivalis W83 DNA polymerase III subunit alpha NP_904390.1 42688 R 242619 CDS NP_904391.1 34539912 2552745 46659..47024 1 NC_002950.2 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 47024 rplS 2552745 rplS Porphyromonas gingivalis W83 50S ribosomal protein L19 NP_904391.1 46659 D 242619 CDS NP_904392.1 34539913 2551785 47777..47896 1 NC_002950.2 hypothetical protein 47896 2551785 PG0039 Porphyromonas gingivalis W83 hypothetical protein NP_904392.1 47777 D 242619 CDS NP_904393.1 34539914 2551486 48074..48463 1 NC_002950.2 ISPg5 transposase Orf1 48463 2551486 PG0040 Porphyromonas gingivalis W83 ISPg5 transposase Orf1 NP_904393.1 48074 D 242619 CDS NP_904394.1 34539915 2551860 48517..49455 1 NC_002950.2 ISPg5 transposase Orf2 49455 2551860 PG0041 Porphyromonas gingivalis W83 ISPg5 transposase Orf2 NP_904394.1 48517 D 242619 CDS NP_904395.1 34539916 2552360 49769..51049 1 NC_002950.2 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 51049 glyA 2552360 glyA Porphyromonas gingivalis W83 serine hydroxymethyltransferase NP_904395.1 49769 D 242619 CDS NP_904396.1 34539917 2552216 51206..53539 1 NC_002950.2 similar to GB:D14662, SP:P30041, PID:285949, GB:D14662, SP:P30041, and PID:285949; identified by sequence similarity; putative; beta-hexosaminidase 53539 nahA 2552216 nahA Porphyromonas gingivalis W83 beta-hexosaminidase NP_904396.1 51206 D 242619 CDS NP_904397.1 34539918 2553144 54199..56253 1 NC_002950.2 molecular chaperone; heat shock protein 90 56253 htpG 2553144 htpG Porphyromonas gingivalis W83 heat shock protein 90 NP_904397.1 54199 D 242619 CDS NP_904398.1 34539919 2552206 complement(56436..57290) 1 NC_002950.2 phosphatidate cytidylyltransferase 57290 cdsA 2552206 cdsA Porphyromonas gingivalis W83 phosphatidate cytidylyltransferase NP_904398.1 56436 R 242619 CDS NP_904399.1 34539920 2551512 complement(57319..59340) 1 NC_002950.2 cell division protein FtsH 59340 2551512 PG0047 Porphyromonas gingivalis W83 cell division protein FtsH NP_904399.1 57319 R 242619 CDS NP_904400.1 34539921 2551866 complement(59544..60647) 1 NC_002950.2 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 60647 2551866 PG0048 Porphyromonas gingivalis W83 GTP-dependent nucleic acid-binding protein EngD NP_904400.1 59544 R 242619 CDS NP_904401.1 34539922 2551869 complement(60666..60830) 1 NC_002950.2 hypothetical protein 60830 2551869 PG0049 Porphyromonas gingivalis W83 hypothetical protein NP_904401.1 60666 R 242619 CDS NP_904402.1 34539923 2551874 61056..62213 1 NC_002950.2 ISPg4, transposase 62213 2551874 PG0050 Porphyromonas gingivalis W83 ISPg4, transposase NP_904402.1 61056 D 242619 CDS NP_904403.1 34539924 2551880 63559..64746 1 NC_002950.2 sensor histidine kinase 64746 2551880 PG0052 Porphyromonas gingivalis W83 sensor histidine kinase NP_904403.1 63559 D 242619 CDS NP_904404.1 34539925 2551881 complement(65057..65176) 1 NC_002950.2 hypothetical protein 65176 2551881 PG0053 Porphyromonas gingivalis W83 hypothetical protein NP_904404.1 65057 R 242619 CDS NP_904405.1 34539926 2552385 65205..66959 1 NC_002950.2 similar to GB:D00173, GB:S46963, SP:P11712, SP:P11713, SP:P33259, SP:P33261, PID:181362, PID:181364, PID:181366, and PID:219571; identified by sequence similarity; putative; single-stranded-DNA-specific exonuclease RecJ 66959 recJ 2552385 recJ Porphyromonas gingivalis W83 single-stranded-DNA-specific exonuclease RecJ NP_904405.1 65205 D 242619 CDS NP_904406.1 34539927 2552338 66956..68011 1 NC_002950.2 similar to SP:Q05370, and PID:49224; identified by sequence similarity; putative; hypothetical protein 68011 2552338 PG0055 Porphyromonas gingivalis W83 hypothetical protein NP_904406.1 66956 D 242619 CDS NP_904407.1 34539928 2552384 68142..69842 1 NC_002950.2 hypothetical protein 69842 2552384 PG0056 Porphyromonas gingivalis W83 hypothetical protein NP_904407.1 68142 D 242619 CDS NP_904408.1 34539929 2552342 69875..71059 1 NC_002950.2 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 71059 pncB 2552342 pncB Porphyromonas gingivalis W83 nicotinate phosphoribosyltransferase NP_904408.1 69875 D 242619 CDS NP_904409.1 34539930 2552208 71059..71652 1 NC_002950.2 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 71652 nadD 2552208 nadD Porphyromonas gingivalis W83 nicotinic acid mononucleotide adenylyltransferase NP_904409.1 71059 D 242619 CDS NP_904410.1 34539931 2551475 71666..72049 1 NC_002950.2 hypothetical protein 72049 2551475 PG0059 Porphyromonas gingivalis W83 hypothetical protein NP_904410.1 71666 D 242619 CDS NP_904411.1 34539932 2551817 72056..72238 1 NC_002950.2 hypothetical protein 72238 2551817 PG0060 Porphyromonas gingivalis W83 hypothetical protein NP_904411.1 72056 D 242619 CDS NP_904412.1 34539933 2551483 72285..73823 1 NC_002950.2 hypothetical protein 73823 yngK-1 2551483 yngK-1 Porphyromonas gingivalis W83 hypothetical protein NP_904412.1 72285 D 242619 CDS NP_904413.1 34539934 2551802 73828..75870 1 NC_002950.2 hypothetical protein 75870 2551802 PG0062 Porphyromonas gingivalis W83 hypothetical protein NP_904413.1 73828 D 242619 CDS NP_904414.1 34539935 2553300 complement(75968..77146) 1 NC_002950.2 outer membrane efflux protein 77146 2553300 PG0063 Porphyromonas gingivalis W83 outer membrane efflux protein NP_904414.1 75968 R 242619 CDS NP_904415.1 34539936 2552731 complement(77164..80283) 1 NC_002950.2 CzcA family heavy metal efflux protein 80283 2552731 PG0064 Porphyromonas gingivalis W83 CzcA family heavy metal efflux protein NP_904415.1 77164 R 242619 CDS NP_904416.1 34539937 2551477 complement(80303..81277) 1 NC_002950.2 RND family efflux transporter MFP subunit 81277 2551477 PG0065 Porphyromonas gingivalis W83 RND family efflux transporter MFP subunit NP_904416.1 80303 R 242619 CDS NP_904417.1 34539938 2551456 complement(81354..81641) 1 NC_002950.2 hypothetical protein 81641 2551456 PG0066 Porphyromonas gingivalis W83 hypothetical protein NP_904417.1 81354 R 242619 CDS NP_904418.1 34539939 2551407 81888..82139 1 NC_002950.2 hypothetical protein 82139 2551407 PG0068 Porphyromonas gingivalis W83 hypothetical protein NP_904418.1 81888 D 242619 CDS NP_904419.1 34539940 2552354 complement(82511..84025) 1 NC_002950.2 similar to GB:X73124, SP:P39591, PID:413947, GB:AL009126, GB:X73124, SP:P39591, PID:413947, and GB:AL009126; identified by sequence similarity; putative; hypothetical protein 84025 2552354 PG0069 Porphyromonas gingivalis W83 hypothetical protein NP_904419.1 82511 R 242619 CDS NP_904420.1 34539941 2551990 complement(84030..84824) 1 NC_002950.2 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 84824 lpxA 2551990 lpxA Porphyromonas gingivalis W83 UDP-N-acetylglucosamine acyltransferase NP_904420.1 84030 R 242619 CDS NP_904421.1 34539942 2552347 complement(84821..86209) 1 NC_002950.2 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase 86209 2552347 PG0071 Porphyromonas gingivalis W83 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase NP_904421.1 84821 R 242619 CDS NP_904422.1 34539943 2552395 complement(86188..87237) 1 NC_002950.2 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 87237 lpxD 2552395 lpxD Porphyromonas gingivalis W83 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase NP_904422.1 86188 R 242619 CDS NP_904423.1 34539944 2552400 complement(87330..88160) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01740; orotidine 5'-monophosphate decarboxylase 88160 2552400 PG0073 Porphyromonas gingivalis W83 orotidine 5'-monophosphate decarboxylase NP_904423.1 87330 R 242619 CDS NP_904424.1 34539945 2552621 complement(88177..89262) 1 NC_002950.2 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 89262 prfA 2552621 prfA Porphyromonas gingivalis W83 peptide chain release factor 1 NP_904424.1 88177 R 242619 CDS NP_904425.1 34539946 2553379 complement(89287..90528) 1 NC_002950.2 similar to GB:X80821, and PID:527580; identified by sequence similarity; putative; phosphoribosylformylglycinamidine cyclo-ligase 90528 2553379 PG0075 Porphyromonas gingivalis W83 phosphoribosylformylglycinamidine cyclo-ligase NP_904425.1 89287 R 242619 CDS NP_904426.1 34539947 2551498 complement(90482..91423) 1 NC_002950.2 similar to GB:D26185, SP:P26497, GB:M59938, PID:143640, PID:40031, PID:467380, and GB:AL009126; identified by sequence similarity; putative; N-acetylmuramoyl-L-alanine amidase 91423 2551498 PG0076 Porphyromonas gingivalis W83 N-acetylmuramoyl-L-alanine amidase NP_904426.1 90482 R 242619 CDS NP_904427.1 34539948 2552637 complement(91656..92354) 1 NC_002950.2 similar to GP:19714814; identified by sequence similarity; putative; hypothetical protein 92354 2552637 PG0078 Porphyromonas gingivalis W83 hypothetical protein NP_904427.1 91656 R 242619 CDS NP_904428.1 34539949 2552623 complement(92327..93628) 1 NC_002950.2 similar to GB:Z36909, and PID:535280; identified by sequence similarity; putative; abortive infection protein 93628 2552623 PG0079 Porphyromonas gingivalis W83 abortive infection protein NP_904428.1 92327 R 242619 CDS NP_904429.1 34539950 2552636 complement(93659..93922) 1 NC_002950.2 hypothetical protein 93922 2552636 PG0080 Porphyromonas gingivalis W83 hypothetical protein NP_904429.1 93659 R 242619 CDS NP_904430.1 34539951 2551862 93945..96122 1 NC_002950.2 hypothetical protein 96122 2551862 PG0081 Porphyromonas gingivalis W83 hypothetical protein NP_904430.1 93945 D 242619 CDS NP_904431.1 34539952 2552476 96184..97086 1 NC_002950.2 hypothetical protein 97086 2552476 PG0082 Porphyromonas gingivalis W83 hypothetical protein NP_904431.1 96184 D 242619 CDS NP_904432.1 34539953 2552726 97092..97877 1 NC_002950.2 hypothetical protein 97877 2552726 PG0083 Porphyromonas gingivalis W83 hypothetical protein NP_904432.1 97092 D 242619 CDS NP_904433.1 34539954 2552213 97972..99171 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01698; L-serine dehydratase 99171 sda 2552213 sda Porphyromonas gingivalis W83 L-serine dehydratase NP_904433.1 97972 D 242619 CDS NP_904434.1 34539955 2552704 99312..100616 1 NC_002950.2 similar to GB:M98276, SP:Q04633, PID:151024, and PID:45364; identified by sequence similarity; putative; alpha-galactosidase 100616 2552704 PG0085 Porphyromonas gingivalis W83 alpha-galactosidase NP_904434.1 99312 D 242619 CDS NP_904435.1 34539956 2551986 complement(100635..102449) 1 NC_002950.2 DEAD/DEAH box helicase 102449 2551986 PG0086 Porphyromonas gingivalis W83 DEAD/DEAH box helicase NP_904435.1 100635 R 242619 CDS NP_904436.1 34539957 2551494 complement(102595..103215) 1 NC_002950.2 SIS domain-containing protein 103215 2551494 PG0087 Porphyromonas gingivalis W83 SIS domain-containing protein NP_904436.1 102595 R 242619 CDS NP_904437.1 34539958 2552221 103415..104632 1 NC_002950.2 similar to GB:X03663, GB:X14720, GB:M14002, GB:M14193, SP:P07333, PID:1196434, PID:182522, PID:1915976, PID:1916754, PID:29900, and PID:442423; identified by sequence similarity; putative; M16 family peptidase 104632 2552221 PG0088 Porphyromonas gingivalis W83 M16 family peptidase NP_904437.1 103415 D 242619 CDS NP_904438.1 34539959 2552605 105664..106143 1 NC_002950.2 Dps family protein 106143 2552605 PG0090 Porphyromonas gingivalis W83 Dps family protein NP_904438.1 105664 D 242619 CDS NP_904439.1 34539960 2552611 complement(106273..107490) 1 NC_002950.2 transporter 107490 2552611 PG0091 Porphyromonas gingivalis W83 transporter NP_904439.1 106273 R 242619 CDS NP_904440.1 34539961 2552600 complement(107549..108688) 1 NC_002950.2 transporter 108688 2552600 PG0092 Porphyromonas gingivalis W83 transporter NP_904440.1 107549 R 242619 CDS NP_904441.1 34539962 2552602 complement(108733..109728) 1 NC_002950.2 HlyD family secretion protein 109728 2552602 PG0093 Porphyromonas gingivalis W83 HlyD family secretion protein NP_904441.1 108733 R 242619 CDS NP_904442.1 34539963 2552214 complement(109778..111283) 1 NC_002950.2 similar to SP:P14114, GB:L19417, SP:P46444, and PID:304053; identified by sequence similarity; putative; outer membrane efflux protein 111283 2552214 PG0094 Porphyromonas gingivalis W83 outer membrane efflux protein NP_904442.1 109778 R 242619 CDS NP_904443.1 34539964 2552448 complement(112178..114853) 1 NC_002950.2 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 114853 mutS 2552448 mutS Porphyromonas gingivalis W83 DNA mismatch repair protein MutS NP_904443.1 112178 R 242619 CDS NP_904444.2 161579534 2552464 complement(115146..115874) 1 NC_002950.2 hypothetical protein 115874 2552464 PG0097 Porphyromonas gingivalis W83 hypothetical protein NP_904444.2 115146 R 242619 CDS NP_904445.1 34539966 2552542 complement(115835..115933) 1 NC_002950.2 hypothetical protein 115933 2552542 PG0098 Porphyromonas gingivalis W83 hypothetical protein NP_904445.1 115835 R 242619 CDS NP_904446.1 34539967 2551863 complement(115917..118376) 1 NC_002950.2 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 118376 pheT 2551863 pheT Porphyromonas gingivalis W83 phenylalanyl-tRNA synthetase subunit beta NP_904446.1 115917 R 242619 CDS NP_904447.1 34539968 2551855 complement(119142..119309) 1 NC_002950.2 hypothetical protein 119309 2551855 PG0100 Porphyromonas gingivalis W83 hypothetical protein NP_904447.1 119142 R 242619 CDS NP_904448.1 34539969 2551505 119338..119556 1 NC_002950.2 hypothetical protein 119556 2551505 PG0101 Porphyromonas gingivalis W83 hypothetical protein NP_904448.1 119338 D 242619 CDS NP_904449.1 34539970 2552472 121143..121301 1 NC_002950.2 hypothetical protein 121301 2552472 PG0102 Porphyromonas gingivalis W83 hypothetical protein NP_904449.1 121143 D 242619 CDS NP_904450.1 34539971 2552474 121430..121585 1 NC_002950.2 hypothetical protein 121585 2552474 PG0103 Porphyromonas gingivalis W83 hypothetical protein NP_904450.1 121430 D 242619 CDS NP_904451.1 34539972 2552210 125481..127508 1 NC_002950.2 similar to SP:P33446, GB:X64876, and PID:313842; identified by sequence similarity; putative; DNA topoisomerase III 127508 topB-1 2552210 topB-1 Porphyromonas gingivalis W83 DNA topoisomerase III NP_904451.1 125481 D 242619 CDS NP_904452.1 34539973 2552518 128858..129994 1 NC_002950.2 similar to GB:Z21876, GB:Z31348, GB:Z31006, GB:Z31007, GB:Z31008, GB:Z31009, GB:Z31010, SP:P33897, PID:1302652, PID:1340149, PID:38591, GB:X01630, GB:L00077, GB:L00078, GB:L00079, GB:L00080, GB:L00081, GB:L00082, GB:L00084, GB:L00083, GB:Z36810, SP:P00966, PID:179047, PID:179057, and PID:28872; identified by sequence similarity; putative; glycosyl transferase 129994 2552518 PG0106 Porphyromonas gingivalis W83 glycosyl transferase NP_904452.1 128858 D 242619 CDS NP_904453.1 34539974 2552211 130241..131449 1 NC_002950.2 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 131449 epsD 2552211 epsD Porphyromonas gingivalis W83 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase NP_904453.1 130241 D 242619 CDS NP_904454.1 34539975 2552524 131471..132694 1 NC_002950.2 hypothetical protein 132694 2552524 PG0109 Porphyromonas gingivalis W83 hypothetical protein NP_904454.1 131471 D 242619 CDS NP_904455.1 34539976 2552522 132731..133771 1 NC_002950.2 similar to SP:P04170; identified by sequence similarity; putative; glycosyl transferase 133771 2552522 PG0110 Porphyromonas gingivalis W83 glycosyl transferase NP_904455.1 132731 D 242619 CDS NP_904456.1 34539977 2552223 133820..135088 1 NC_002950.2 capsular polysacharride biosynthesis gene 135088 2552223 PG0111 Porphyromonas gingivalis W83 capsular polysacharride biosynthesis gene NP_904456.1 133820 D 242619 CDS NP_904457.1 34539978 2552224 136065..136922 1 NC_002950.2 identified by match to PFAM protein family HMM PF02522; hypothetical protein 136922 2552224 PG0113 Porphyromonas gingivalis W83 hypothetical protein NP_904457.1 136065 D 242619 CDS NP_904458.1 34539979 2552530 136919..138058 1 NC_002950.2 hypothetical protein 138058 2552530 PG0114 Porphyromonas gingivalis W83 hypothetical protein NP_904458.1 136919 D 242619 CDS NP_904459.1 34539980 2551870 138178..138615 1 NC_002950.2 hexapeptide transferase 138615 2551870 PG0115 Porphyromonas gingivalis W83 hexapeptide transferase NP_904459.1 138178 D 242619 CDS NP_904460.1 34539981 2552225 138609..139832 1 NC_002950.2 hypothetical protein 139832 2552225 PG0116 Porphyromonas gingivalis W83 hypothetical protein NP_904460.1 138609 D 242619 CDS NP_904461.1 34539982 2552485 139807..141345 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; polysaccharide transport protein 141345 2552485 PG0117 Porphyromonas gingivalis W83 polysaccharide transport protein NP_904461.1 139807 D 242619 CDS NP_904462.1 34539983 2552195 141349..142404 1 NC_002950.2 glycosyl transferase group 2 family protein 142404 2552195 PG0118 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_904462.1 141349 D 242619 CDS NP_904463.1 34539984 2552201 142440..143138 1 NC_002950.2 similar to GB:M26167, SP:P10720, and PID:292390; identified by sequence similarity; putative; WecB/TagA/CpsF family glycosyl transferase 143138 2552201 PG0119 Porphyromonas gingivalis W83 WecB/TagA/CpsF family glycosyl transferase NP_904463.1 142440 D 242619 CDS NP_904464.1 34539985 2551825 143144..144304 1 NC_002950.2 UDP-N-acetylglucosamine 2-epimerase 144304 epsC 2551825 epsC Porphyromonas gingivalis W83 UDP-N-acetylglucosamine 2-epimerase NP_904464.1 143144 D 242619 CDS NP_904465.1 34539986 2552529 144608..144874 1 NC_002950.2 similar to GB:L05425, PID:179285, GB:L05425, and PID:179285; identified by sequence similarity; putative; DNA-binding protein HU 144874 hup-1 2552529 hup-1 Porphyromonas gingivalis W83 DNA-binding protein HU NP_904465.1 144608 D 242619 CDS NP_904466.1 34539987 2552199 145127..145645 1 NC_002950.2 hypothetical protein 145645 2552199 PG0123 Porphyromonas gingivalis W83 hypothetical protein NP_904466.1 145127 D 242619 CDS NP_904467.1 34539988 2552573 complement(145704..146324) 1 NC_002950.2 hypothetical protein 146324 2552573 PG0124 Porphyromonas gingivalis W83 hypothetical protein NP_904467.1 145704 R 242619 CDS NP_904468.1 34539989 2552198 complement(146328..146876) 1 NC_002950.2 hypothetical protein 146876 2552198 PG0125 Porphyromonas gingivalis W83 hypothetical protein NP_904468.1 146328 R 242619 CDS NP_904469.1 34539990 2552581 complement(146873..148108) 1 NC_002950.2 type I phosphodiesterase/nucleotide pyrophosphatase 148108 2552581 PG0126 Porphyromonas gingivalis W83 type I phosphodiesterase/nucleotide pyrophosphatase NP_904469.1 146873 R 242619 CDS NP_904470.1 34539991 2552580 148690..149727 1 NC_002950.2 ferrochelatase 149727 hemH 2552580 hemH Porphyromonas gingivalis W83 ferrochelatase NP_904470.1 148690 D 242619 CDS NP_904471.1 34539992 2552544 149734..150708 1 NC_002950.2 hypothetical protein 150708 2552544 PG0128 Porphyromonas gingivalis W83 hypothetical protein NP_904471.1 149734 D 242619 CDS NP_904472.1 34539993 2552197 150725..151849 1 NC_002950.2 mannosyltransferase 151849 2552197 PG0129 Porphyromonas gingivalis W83 mannosyltransferase NP_904472.1 150725 D 242619 CDS NP_904473.1 34539994 2552191 complement(152012..152758) 1 NC_002950.2 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 152758 gpmA 2552191 gpmA Porphyromonas gingivalis W83 phosphoglyceromutase NP_904473.1 152012 R 242619 CDS NP_904474.1 34539995 2552229 153019..153114 1 NC_002950.2 hypothetical protein 153114 2552229 PG0132 Porphyromonas gingivalis W83 hypothetical protein NP_904474.1 153019 D 242619 CDS NP_904475.1 34539996 2552547 complement(154349..155854) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; hypothetical protein 155854 2552547 PG0133 Porphyromonas gingivalis W83 hypothetical protein NP_904475.1 154349 R 242619 CDS NP_904476.1 34539997 2552548 complement(155873..157225) 1 NC_002950.2 magnesium transporter 157225 mgtE 2552548 mgtE Porphyromonas gingivalis W83 magnesium transporter NP_904476.1 155873 R 242619 CDS NP_904477.1 34539998 2552537 complement(157257..158033) 1 NC_002950.2 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 158033 ksgA 2552537 ksgA Porphyromonas gingivalis W83 dimethyladenosine transferase NP_904477.1 157257 R 242619 CDS NP_904478.1 34539999 2552218 158164..159213 1 NC_002950.2 hypothetical protein 159213 2552218 PG0136 Porphyromonas gingivalis W83 hypothetical protein NP_904478.1 158164 D 242619 CDS NP_904479.1 34540000 2552227 159244..160698 1 NC_002950.2 similar to GB:L19444; identified by sequence similarity; putative; aminoacyl-histidine dipeptidase 160698 pepD-1 2552227 pepD-1 Porphyromonas gingivalis W83 aminoacyl-histidine dipeptidase NP_904479.1 159244 D 242619 CDS NP_904480.1 34540001 2552554 160813..161694 1 NC_002950.2 malonyl CoA-ACP transacylase 161694 fabD 2552554 fabD Porphyromonas gingivalis W83 malonyl CoA-ACP transacylase NP_904480.1 160813 D 242619 CDS NP_904481.1 34540002 2552560 complement(161876..163231) 1 NC_002950.2 similar to GB:U00148, and PID:401712; identified by sequence similarity; putative; lytic murein transglycosylase D 163231 2552560 PG0139 Porphyromonas gingivalis W83 lytic murein transglycosylase D NP_904481.1 161876 R 242619 CDS NP_904482.1 34540003 2552570 complement(163241..163948) 1 NC_002950.2 hypothetical protein 163948 2552570 PG0140 Porphyromonas gingivalis W83 hypothetical protein NP_904482.1 163241 R 242619 CDS NP_904483.1 34540004 2552589 complement(163968..164837) 1 NC_002950.2 similar to GB:M14219, SP:P07585, PID:181170, and PID:609452; identified by sequence similarity; putative; spoOJ protein 164837 spo0J 2552589 spo0J Porphyromonas gingivalis W83 spoOJ protein NP_904483.1 163968 R 242619 CDS NP_904484.1 34540005 2552574 complement(164845..165621) 1 NC_002950.2 similar to GB:M25108, SP:P05106, and PID:386833; identified by sequence similarity; putative; SpoOJ regulator protein 165621 soj 2552574 soj Porphyromonas gingivalis W83 SpoOJ regulator protein NP_904484.1 164845 R 242619 CDS NP_904485.1 34540006 2552220 complement(165837..166715) 1 NC_002950.2 carbon-nitrogen family hydrolase 166715 2552220 PG0143 Porphyromonas gingivalis W83 carbon-nitrogen family hydrolase NP_904485.1 165837 R 242619 CDS NP_904486.1 34540007 2552483 complement(166733..167758) 1 NC_002950.2 hypothetical protein 167758 2552483 PG0144 Porphyromonas gingivalis W83 hypothetical protein NP_904486.1 166733 R 242619 CDS NP_904487.1 34540008 2551491 167971..168549 1 NC_002950.2 hypothetical protein 168549 2551491 PG0145 Porphyromonas gingivalis W83 hypothetical protein NP_904487.1 167971 D 242619 CDS NP_904488.1 34540009 2553201 complement(168498..169205) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00428; hypothetical protein 169205 2553201 PG0146 Porphyromonas gingivalis W83 hypothetical protein NP_904488.1 168498 R 242619 CDS NP_904489.1 34540010 2551983 complement(169218..169757) 1 NC_002950.2 hypothetical protein 169757 2551983 PG0147 Porphyromonas gingivalis W83 hypothetical protein NP_904489.1 169218 R 242619 CDS NP_904490.1 34540011 2551485 complement(169744..170997) 1 NC_002950.2 sigma-54-dependent transcriptional regulator 170997 2551485 PG0148 Porphyromonas gingivalis W83 sigma-54-dependent transcriptional regulator NP_904490.1 169744 R 242619 CDS NP_904491.1 34540012 2552310 complement(171025..172293) 1 NC_002950.2 hypothetical protein 172293 2552310 PG0149 Porphyromonas gingivalis W83 hypothetical protein NP_904491.1 171025 R 242619 CDS NP_904492.1 34540013 2551981 complement(172330..173634) 1 NC_002950.2 similar to GB:X56550, PID:530026, GB:X56550, and PID:530026; identified by sequence similarity; putative; hypothetical protein 173634 2551981 PG0150 Porphyromonas gingivalis W83 hypothetical protein NP_904492.1 172330 R 242619 CDS NP_904493.1 34540014 2551997 complement(173631..174584) 1 NC_002950.2 signal recognition particle-docking protein FtsY 174584 ftsY 2551997 ftsY Porphyromonas gingivalis W83 signal recognition particle-docking protein FtsY NP_904493.1 173631 R 242619 CDS NP_904494.1 34540015 2552247 complement(174611..175747) 1 NC_002950.2 carboxynorspermidine decarboxylase 175747 nspC 2552247 nspC Porphyromonas gingivalis W83 carboxynorspermidine decarboxylase NP_904494.1 174611 R 242619 CDS NP_904495.1 34540016 2551976 complement(175757..177520) 1 NC_002950.2 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 177520 aspS 2551976 aspS Porphyromonas gingivalis W83 aspartyl-tRNA synthetase NP_904495.1 175757 R 242619 CDS NP_904496.1 34540017 2552261 complement(177951..178943) 1 NC_002950.2 riboflavin biosynthesis protein RibD 178943 ribD 2552261 ribD Porphyromonas gingivalis W83 riboflavin biosynthesis protein RibD NP_904496.1 177951 R 242619 CDS NP_904497.1 34540018 2552236 178968..179849 1 NC_002950.2 HemK family modification methylase 179849 2552236 PG0156 Porphyromonas gingivalis W83 HemK family modification methylase NP_904497.1 178968 D 242619 CDS NP_904498.1 34540019 2552317 179846..180331 1 NC_002950.2 identified by match to PFAM protein family HMM PF02631; regulatory protein RecX 180331 recX 2552317 recX Porphyromonas gingivalis W83 regulatory protein RecX NP_904498.1 179846 D 242619 CDS NP_904499.1 34540020 2551455 180315..181055 1 NC_002950.2 competence protein F-like protein 181055 2551455 PG0158 Porphyromonas gingivalis W83 competence protein F-like protein NP_904499.1 180315 D 242619 CDS NP_904500.1 34540021 2552327 complement(181185..183254) 1 NC_002950.2 endopeptidase PepO 183254 pepO 2552327 pepO Porphyromonas gingivalis W83 endopeptidase PepO NP_904500.1 181185 R 242619 CDS NP_904501.1 34540022 2552265 complement(183273..184175) 1 NC_002950.2 similar to GB:D10483, SP:P11288, PID:216438, PID:537248, PID:1128976, GB:U00096, and PID:1786187; identified by sequence similarity; putative; hypothetical protein 184175 2552265 PG0160 Porphyromonas gingivalis W83 hypothetical protein NP_904501.1 183273 R 242619 CDS NP_904502.1 34540023 2551448 complement(184357..184506) 1 NC_002950.2 hypothetical protein 184506 2551448 PG0161 Porphyromonas gingivalis W83 hypothetical protein NP_904502.1 184357 R 242619 CDS NP_904503.1 34540024 2552235 complement(184595..185176) 1 NC_002950.2 ECF subfamily RNA polymerase sigma factor 185176 2552235 PG0162 Porphyromonas gingivalis W83 ECF subfamily RNA polymerase sigma factor NP_904503.1 184595 R 242619 CDS NP_904504.1 34540025 2551450 complement(185326..186975) 1 NC_002950.2 catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase 186975 pfk 2551450 pfk Porphyromonas gingivalis W83 diphosphate--fructose-6-phosphate 1-phosphotransferase NP_904504.1 185326 R 242619 CDS NP_904505.1 34540026 2552313 complement(187171..187485) 1 NC_002950.2 similar to GP:11323229; identified by sequence similarity; putative; hypothetical protein 187485 2552313 PG0164 Porphyromonas gingivalis W83 hypothetical protein NP_904505.1 187171 R 242619 CDS NP_904506.1 34540027 2552446 complement(187460..187897) 1 NC_002950.2 similar to GB:X75208, SP:P54753, and PID:406868; identified by sequence similarity; putative; heat shock protein 15 187897 hslR 2552446 hslR Porphyromonas gingivalis W83 heat shock protein 15 NP_904506.1 187460 R 242619 CDS NP_904507.1 34540028 2551446 complement(187903..188460) 1 NC_002950.2 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 188460 pth 2551446 pth Porphyromonas gingivalis W83 peptidyl-tRNA hydrolase NP_904507.1 187903 R 242619 CDS NP_904508.1 34540029 2551445 complement(188602..189180) 1 NC_002950.2 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 189180 rplY 2551445 rplY Porphyromonas gingivalis W83 50S ribosomal protein L25 NP_904508.1 188602 R 242619 CDS NP_904509.1 34540030 2552318 189792..191834 1 NC_002950.2 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 191834 metG 2552318 metG Porphyromonas gingivalis W83 methionyl-tRNA synthetase NP_904509.1 189792 D 242619 CDS NP_904510.1 34540031 2552297 191864..193636 1 NC_002950.2 5'-nucleotidase 193636 2552297 PG0171 Porphyromonas gingivalis W83 5'-nucleotidase NP_904510.1 191864 D 242619 CDS NP_904511.1 34540032 2553133 193633..194415 1 NC_002950.2 exonuclease 194415 2553133 PG0172 Porphyromonas gingivalis W83 exonuclease NP_904511.1 193633 D 242619 CDS NP_904512.1 34540033 2551441 complement(194478..194831) 1 NC_002950.2 similar to SP:P33159, GB:X68014, and PID:40807; identified by sequence similarity; putative; transcriptional regulator 194831 2551441 PG0173 Porphyromonas gingivalis W83 transcriptional regulator NP_904512.1 194478 R 242619 CDS NP_904513.1 34540034 2552307 complement(194902..197718) 1 NC_002950.2 pyridine nucleotide-disulfide oxidoreductase 197718 2552307 PG0174 Porphyromonas gingivalis W83 pyridine nucleotide-disulfide oxidoreductase NP_904513.1 194902 R 242619 CDS NP_904514.1 34540035 2551430 199227..200384 1 NC_002950.2 ISPg4, transposase 200384 2551430 PG0177 Porphyromonas gingivalis W83 ISPg4, transposase NP_904514.1 199227 D 242619 CDS NP_904515.1 34540036 2551415 201923..202897 1 NC_002950.2 hypothetical protein 202897 2551415 PG0179 Porphyromonas gingivalis W83 hypothetical protein NP_904515.1 201923 D 242619 CDS NP_904516.1 34540037 2551412 203195..204535 1 NC_002950.2 putative lipoprotein 204535 2551412 PG0180 Porphyromonas gingivalis W83 putative lipoprotein NP_904516.1 203195 D 242619 CDS NP_904517.1 34540038 2552315 204544..205545 1 NC_002950.2 hypothetical protein 205545 2552315 PG0181 Porphyromonas gingivalis W83 hypothetical protein NP_904517.1 204544 D 242619 CDS NP_904518.1 34540039 2551410 205692..209372 1 NC_002950.2 von Willebrand factor A 209372 2551410 PG0182 Porphyromonas gingivalis W83 von Willebrand factor A NP_904518.1 205692 D 242619 CDS NP_904519.1 34540040 2551409 209569..216183 1 NC_002950.2 putative lipoprotein 216183 2551409 PG0183 Porphyromonas gingivalis W83 putative lipoprotein NP_904519.1 209569 D 242619 CDS NP_904520.1 34540041 2552292 216542..217627 1 NC_002950.2 ISPg1, transposase 217627 2552292 PG0184 Porphyromonas gingivalis W83 ISPg1, transposase NP_904520.1 216542 D 242619 CDS NP_904521.1 34540042 2551403 218469..221522 1 NC_002950.2 ragA protein 221522 ragA 2551403 ragA Porphyromonas gingivalis W83 ragA protein NP_904521.1 218469 D 242619 CDS NP_904522.1 34540043 2551404 221552..223057 1 NC_002950.2 lipoprotein RagB 223057 ragB 2551404 ragB Porphyromonas gingivalis W83 lipoprotein RagB NP_904522.1 221552 D 242619 CDS NP_904523.1 34540044 2552288 224074..225444 1 NC_002950.2 putative lipoprotein 225444 2552288 PG0188 Porphyromonas gingivalis W83 putative lipoprotein NP_904523.1 224074 D 242619 CDS NP_904524.1 34540045 2551401 225431..226138 1 NC_002950.2 hypothetical protein 226138 2551401 PG0189 Porphyromonas gingivalis W83 hypothetical protein NP_904524.1 225431 D 242619 CDS NP_904525.1 34540046 2551402 226216..226980 1 NC_002950.2 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 226980 uppS 2551402 uppS Porphyromonas gingivalis W83 undecaprenyl pyrophosphate synthase NP_904525.1 226216 D 242619 CDS NP_904526.1 34540047 2552287 226998..229673 1 NC_002950.2 outer membrane protein 229673 2552287 PG0191 Porphyromonas gingivalis W83 outer membrane protein NP_904526.1 226998 D 242619 CDS NP_904527.1 34540048 2551398 229730..230254 1 NC_002950.2 cationic outer membrane protein OmpH 230254 ompH-1 2551398 ompH-1 Porphyromonas gingivalis W83 cationic outer membrane protein OmpH NP_904527.1 229730 D 242619 CDS NP_904528.1 34540049 2551399 230289..230780 1 NC_002950.2 cationic outer membrane protein OmpH 230780 ompH-2 2551399 ompH-2 Porphyromonas gingivalis W83 cationic outer membrane protein OmpH NP_904528.1 230289 D 242619 CDS NP_904529.1 34540050 2552281 231068..231970 1 NC_002950.2 ISPg3, transposase 231970 2552281 PG0194 Porphyromonas gingivalis W83 ISPg3, transposase NP_904529.1 231068 D 242619 CDS NP_904530.1 34540051 2551389 232186..232764 1 NC_002950.2 rubrerythrin 232764 2551389 PG0195 Porphyromonas gingivalis W83 rubrerythrin NP_904530.1 232186 D 242619 CDS NP_904531.1 34540052 2551395 233043..235868 1 NC_002950.2 M16 family peptidase 235868 2551395 PG0196 Porphyromonas gingivalis W83 M16 family peptidase NP_904531.1 233043 D 242619 CDS NP_904532.1 34540053 2552272 complement(236031..236294) 1 NC_002950.2 hypothetical protein 236294 2552272 PG0197 Porphyromonas gingivalis W83 hypothetical protein NP_904532.1 236031 R 242619 CDS NP_904533.1 34540054 2551387 237022..237561 1 NC_002950.2 similar to GB:L05186, GB:L13616, SP:Q05397, and PID:439875; identified by sequence similarity; putative; hypothetical protein 237561 2551387 PG0198 Porphyromonas gingivalis W83 hypothetical protein NP_904533.1 237022 D 242619 CDS NP_904534.1 34540055 2551383 complement(237514..238227) 1 NC_002950.2 TatD family protein 238227 2551383 PG0199 Porphyromonas gingivalis W83 TatD family protein NP_904534.1 237514 R 242619 CDS NP_904535.1 34540056 2552277 complement(238211..238441) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00278; hypothetical protein 238441 2552277 PG0200 Porphyromonas gingivalis W83 hypothetical protein NP_904535.1 238211 R 242619 CDS NP_904536.1 34540057 2551386 complement(238447..238860) 1 NC_002950.2 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 238860 rnpA 2551386 rnpA Porphyromonas gingivalis W83 ribonuclease P NP_904536.1 238447 R 242619 CDS NP_904537.1 34540058 2551380 complement(238857..239603) 1 NC_002950.2 uroporphyrinogen-III synthase 239603 2551380 PG0202 Porphyromonas gingivalis W83 uroporphyrinogen-III synthase NP_904537.1 238857 R 242619 CDS NP_904538.1 34540059 2552273 complement(239594..240301) 1 NC_002950.2 hypothetical protein 240301 2552273 PG0203 Porphyromonas gingivalis W83 hypothetical protein NP_904538.1 239594 R 242619 CDS NP_904539.1 34540060 2551377 complement(240352..240597) 1 NC_002950.2 hypothetical protein 240597 2551377 PG0204 Porphyromonas gingivalis W83 hypothetical protein NP_904539.1 240352 R 242619 CDS NP_904540.1 34540061 2551371 complement(240603..242183) 1 NC_002950.2 peptide chain release factor 3 242183 prfC 2551371 prfC Porphyromonas gingivalis W83 peptide chain release factor 3 NP_904540.1 240603 R 242619 CDS NP_904541.1 34540062 2552269 243371..244156 1 NC_002950.2 formate/nitrite transporter 244156 2552269 PG0209 Porphyromonas gingivalis W83 formate/nitrite transporter NP_904541.1 243371 D 242619 CDS NP_904542.1 34540063 2551368 complement(244251..246059) 1 NC_002950.2 precorrin-6x reductase 246059 2551368 PG0210 Porphyromonas gingivalis W83 precorrin-6x reductase NP_904542.1 244251 R 242619 CDS NP_904543.1 34540064 2552022 complement(246056..247900) 1 NC_002950.2 similar to GB:Z27509, PID:185358, and PID:505446; identified by sequence similarity; putative; cobalamin biosynthesis protein CbiG/precorrin-4 C11-methyltransferase 247900 cbiGF 2552022 cbiGF Porphyromonas gingivalis W83 cobalamin biosynthesis protein CbiG/precorrin-4 C11-methyltransferase NP_904543.1 246056 R 242619 CDS NP_904544.1 34540065 2552256 complement(247914..249155) 1 NC_002950.2 similar to GB:X13482, SP:P09661, and PID:37547; identified by sequence similarity; putative; precorrin-6Y C5,15-methyltransferase 249155 cobL 2552256 cobL Porphyromonas gingivalis W83 precorrin-6Y C5,15-methyltransferase NP_904544.1 247914 R 242619 CDS NP_904545.1 34540066 2551366 complement(249148..250554) 1 NC_002950.2 similar to SP:P37011, GB:U00096, PID:1657597, PID:1773085, and PID:1786601; identified by sequence similarity; putative; precorrin-3 methylase/precorrin-8X methylmutase 250554 2551366 PG0213 Porphyromonas gingivalis W83 precorrin-3 methylase/precorrin-8X methylmutase NP_904545.1 249148 R 242619 CDS NP_904546.1 34540067 2552020 251103..251603 1 NC_002950.2 similar to GB:L14266, and PID:293079; identified by sequence similarity; putative; ECF subfamily RNA polymerase sigma factor 251603 2552020 PG0214 Porphyromonas gingivalis W83 ECF subfamily RNA polymerase sigma factor NP_904546.1 251103 D 242619 CDS NP_904547.1 34540068 2552246 251600..252088 1 NC_002950.2 hypothetical protein 252088 2552246 PG0215 Porphyromonas gingivalis W83 hypothetical protein NP_904547.1 251600 D 242619 CDS NP_904548.1 34540069 2552021 252096..252596 1 NC_002950.2 hypothetical protein 252596 2552021 PG0216 Porphyromonas gingivalis W83 hypothetical protein NP_904548.1 252096 D 242619 CDS NP_904549.1 34540070 2552019 252630..253523 1 NC_002950.2 hypothetical protein 253523 2552019 PG0217 Porphyromonas gingivalis W83 hypothetical protein NP_904549.1 252630 D 242619 CDS NP_904550.1 34540071 2552254 253435..254394 1 NC_002950.2 hypothetical protein 254394 2552254 PG0218 Porphyromonas gingivalis W83 hypothetical protein NP_904550.1 253435 D 242619 CDS NP_904551.1 34540072 2552018 complement(255100..255648) 1 NC_002950.2 similar to GB:U09868, PID:498877, GB:U09868, and PID:498877; identified by sequence similarity; putative; hypothetical protein 255648 2552018 PG0219 Porphyromonas gingivalis W83 hypothetical protein NP_904551.1 255100 R 242619 CDS NP_904552.1 34540073 2552015 complement(255703..255924) 1 NC_002950.2 hypothetical protein 255924 2552015 PG0221 Porphyromonas gingivalis W83 hypothetical protein NP_904552.1 255703 R 242619 CDS NP_904553.1 34540074 2552248 complement(256003..256470) 1 NC_002950.2 histone-like family DNA-binding protein 256470 2552248 PG0222 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_904553.1 256003 R 242619 CDS NP_904554.1 34540075 2552012 complement(257209..257700) 1 NC_002950.2 similar to GB:M24777, SP:P06994, GB:M10417, GB:U04742, GB:U04743, GB:U04744, GB:U04745, GB:U04746, GB:U04747, GB:U04748, GB:U04749, GB:U04750, GB:U04751, GB:U04752, GB:U04753, GB:U04754, GB:U04755, GB:U04756, GB:U04757, GB:U04758, GB:U04759, GB:U04760, GB:U04770, GB:Y00129, PID:440001, PID:440003, PID:440005, PID:440009, PID:440011, PID:440013, PID:440017, PID:440019, PID:440021, PID:440023, PID:440025, PID:440027, PID:440029, PID:440031, PID:440033, PID:440035, PID:440037, PID:440057, PID:450385, PID:146799, PID:41989, PID:606175, GB:U00096, PID:1789632, PID:2289251, PID:2289253, PID:2289255, PID:2289257, PID:2289259, PID:2289261, PID:2289263, PID:2289265, PID:2289267, PID:2289269, PID:2289271, PID:2289273, PID:2289275, PID:2289277, PID:2289279, PID:2289281, PID:2289283, PID:2289285, PID:2289287, PID:2289289, PID:2289291, PID:2289293, PID:2289295, PID:2289297, PID:2289299, PID:2289301, PID:2289303, PID:2289305, PID:2289307, PID:2289309, PID:2289311, PID:2289313, PID:2289315, PID:2289317, PID:2289319, PID:22; exonuclease 257700 2552012 PG0223 Porphyromonas gingivalis W83 exonuclease NP_904554.1 257209 R 242619 CDS NP_904555.1 34540076 2552014 complement(257704..258342) 1 NC_002950.2 similar to GB:Z31385, PID:619427, PID:619615, PID:619616, PID:861002, PID:940532, GB:Z31385, PID:619427, PID:619615, PID:619616, PID:861002, and PID:940532; identified by sequence similarity; putative; hypothetical protein 258342 2552014 PG0224 Porphyromonas gingivalis W83 hypothetical protein NP_904555.1 257704 R 242619 CDS NP_904556.1 34540077 2552243 complement(258575..259732) 1 NC_002950.2 ISPg4, transposase 259732 2552243 PG0225 Porphyromonas gingivalis W83 ISPg4, transposase NP_904556.1 258575 R 242619 CDS NP_904557.1 34540078 2552013 complement(259928..262621) 1 NC_002950.2 transglutaminase 262621 2552013 PG0226 Porphyromonas gingivalis W83 transglutaminase NP_904557.1 259928 R 242619 CDS NP_904558.1 34540079 2552010 complement(262683..264068) 1 NC_002950.2 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 264068 radA 2552010 radA Porphyromonas gingivalis W83 DNA repair protein RadA NP_904558.1 262683 R 242619 CDS NP_904559.1 34540080 2552240 complement(264114..265040) 1 NC_002950.2 DdaH family protein 265040 2552240 PG0228 Porphyromonas gingivalis W83 DdaH family protein NP_904559.1 264114 R 242619 CDS NP_904560.1 34540081 2552011 265012..265410 1 NC_002950.2 hypothetical protein 265410 2552011 PG0229 Porphyromonas gingivalis W83 hypothetical protein NP_904560.1 265012 D 242619 CDS NP_904561.1 34540082 2552009 265512..266174 1 NC_002950.2 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 266174 2552009 PG0230 Porphyromonas gingivalis W83 putative translaldolase NP_904561.1 265512 D 242619 CDS NP_904562.1 34540083 2551689 266171..267469 1 NC_002950.2 hypothetical protein 267469 2551689 PG0231 Porphyromonas gingivalis W83 hypothetical protein NP_904562.1 266171 D 242619 CDS NP_904563.1 34540084 2552008 complement(267548..270013) 1 NC_002950.2 zinc carboxypeptidase 270013 2552008 PG0232 Porphyromonas gingivalis W83 zinc carboxypeptidase NP_904563.1 267548 R 242619 CDS NP_904564.1 34540085 2552007 complement(270851..271474) 1 NC_002950.2 hypothetical protein 271474 2552007 PG0234 Porphyromonas gingivalis W83 hypothetical protein NP_904564.1 270851 R 242619 CDS NP_904565.1 34540086 2551425 271769..273292 1 NC_002950.2 carboxyl-terminal protease 273292 2551425 PG0235 Porphyromonas gingivalis W83 carboxyl-terminal protease NP_904565.1 271769 D 242619 CDS NP_904566.1 34540087 2552001 273364..274884 1 NC_002950.2 hypothetical protein 274884 2552001 PG0236 Porphyromonas gingivalis W83 hypothetical protein NP_904566.1 273364 D 242619 CDS NP_904567.1 34540088 2552002 274918..275586 1 NC_002950.2 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 275586 ung 2552002 ung Porphyromonas gingivalis W83 uracil-DNA glycosylase NP_904567.1 274918 D 242619 CDS NP_904568.1 34540089 2551680 complement(276485..277183) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01656; HAD superfamily hydrolase 277183 2551680 PG0240 Porphyromonas gingivalis W83 HAD superfamily hydrolase NP_904568.1 276485 R 242619 CDS NP_904569.1 34540090 2552000 complement(277450..278304) 1 NC_002950.2 putative lipoprotein 278304 2552000 PG0241 Porphyromonas gingivalis W83 putative lipoprotein NP_904569.1 277450 R 242619 CDS NP_904570.1 34540091 2551998 complement(278349..279050) 1 NC_002950.2 similar to GB:D38553, PID:559715, GB:D38553, and PID:559715; identified by sequence similarity; putative; hypothetical protein 279050 2551998 PG0242 Porphyromonas gingivalis W83 hypothetical protein NP_904570.1 278349 R 242619 CDS NP_904571.1 34540092 2551839 complement(279066..279542) 1 NC_002950.2 hypothetical protein 279542 2551839 PG0243 Porphyromonas gingivalis W83 hypothetical protein NP_904571.1 279066 R 242619 CDS NP_904572.1 34540093 2551460 complement(279863..280975) 1 NC_002950.2 universal stress protein 280975 2551460 PG0245 Porphyromonas gingivalis W83 universal stress protein NP_904572.1 279863 R 242619 CDS NP_904573.1 34540094 2551457 complement(281140..281331) 1 NC_002950.2 similar to GB:D26185, SP:P37573, PID:467476, and GB:AL009126; identified by sequence similarity; putative; hypothetical protein 281331 2551457 PG0246 Porphyromonas gingivalis W83 hypothetical protein NP_904573.1 281140 R 242619 CDS NP_904574.1 34540095 2551548 complement(281600..281932) 1 NC_002950.2 translation initation factor SUI1 281932 2551548 PG0248 Porphyromonas gingivalis W83 translation initation factor SUI1 NP_904574.1 281600 R 242619 CDS NP_904575.1 34540096 2551459 complement(282029..283888) 1 NC_002950.2 similar to SP:P35887, GB:U01667, and PID:403535; identified by sequence similarity; putative; oxaloacetate decarboxylase 283888 2551459 PG0249 Porphyromonas gingivalis W83 oxaloacetate decarboxylase NP_904575.1 282029 R 242619 CDS NP_904576.1 34540097 2551972 complement(283995..284171) 1 NC_002950.2 hypothetical protein 284171 2551972 PG0250 Porphyromonas gingivalis W83 hypothetical protein NP_904576.1 283995 R 242619 CDS NP_904577.1 34540098 2551447 284747..285205 1 NC_002950.2 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 285205 2551447 PG0253 Porphyromonas gingivalis W83 hypothetical protein NP_904577.1 284747 D 242619 CDS NP_904578.1 34540099 2551971 285252..286586 1 NC_002950.2 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 286586 nusA 2551971 nusA Porphyromonas gingivalis W83 transcription elongation factor NusA NP_904578.1 285252 D 242619 CDS NP_904579.1 34540100 2551965 286682..289621 1 NC_002950.2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 289621 infB 2551965 infB Porphyromonas gingivalis W83 translation initiation factor IF-2 NP_904579.1 286682 D 242619 CDS NP_904580.1 34540101 2551832 289649..290140 1 NC_002950.2 CvpA family protein 290140 2551832 PG0256 Porphyromonas gingivalis W83 CvpA family protein NP_904580.1 289649 D 242619 CDS NP_904581.1 34540102 2551968 290174..291619 1 NC_002950.2 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 291619 2551968 PG0257 Porphyromonas gingivalis W83 cysteine desulfurase activator complex subunit SufB NP_904581.1 290174 D 242619 CDS NP_904582.1 34540103 2551969 291659..292411 1 NC_002950.2 ABC transporter ATP-binding protein 292411 2551969 PG0258 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_904582.1 291659 D 242619 CDS NP_904583.1 34540104 2551816 292418..293761 1 NC_002950.2 similar to GB:L36531, SP:P53708, PID:559056, GB:L36531, SP:P53708, and PID:559056; identified by sequence similarity; putative; hypothetical protein 293761 2551816 PG0259 Porphyromonas gingivalis W83 hypothetical protein NP_904583.1 292418 D 242619 CDS NP_904584.1 34540105 2551966 complement(293952..294854) 1 NC_002950.2 ISPg3, transposase 294854 2551966 PG0261 Porphyromonas gingivalis W83 ISPg3, transposase NP_904584.1 293952 R 242619 CDS NP_904585.1 34540106 2551717 295803..297095 1 NC_002950.2 tyrosyl-tRNA synthetase 297095 tyrS 2551717 tyrS Porphyromonas gingivalis W83 tyrosyl-tRNA synthetase NP_904585.1 295803 D 242619 CDS NP_904586.1 34540107 2551967 297115..298182 1 NC_002950.2 glycosyl transferase group 2 family protein 298182 2551967 PG0264 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_904586.1 297115 D 242619 CDS NP_904587.1 34540108 2551963 complement(298483..298641) 1 NC_002950.2 hypothetical protein 298641 2551963 PG0265 Porphyromonas gingivalis W83 hypothetical protein NP_904587.1 298483 R 242619 CDS NP_904588.1 34540109 2551978 299240..301033 1 NC_002950.2 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 301033 argS 2551978 argS Porphyromonas gingivalis W83 arginyl-tRNA synthetase NP_904588.1 299240 D 242619 CDS NP_904589.1 34540110 2551962 301038..302123 1 NC_002950.2 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 302123 mnmA 2551962 mnmA Porphyromonas gingivalis W83 tRNA-specific 2-thiouridylase MnmA NP_904589.1 301038 D 242619 CDS NP_904590.1 34540111 2551957 302168..302932 1 NC_002950.2 exodeoxyribonuclease III 302932 xth 2551957 xth Porphyromonas gingivalis W83 exodeoxyribonuclease III NP_904590.1 302168 D 242619 CDS NP_904591.1 34540112 2551833 303005..303931 1 NC_002950.2 similar to GB:L04510, SP:P36406, and PID:292070; identified by sequence similarity; putative; redox-sensitive transcriptional activator OxyR 303931 oxyR 2551833 oxyR Porphyromonas gingivalis W83 redox-sensitive transcriptional activator OxyR NP_904591.1 303005 D 242619 CDS NP_904592.1 34540113 2551960 303982..304452 1 NC_002950.2 similar to GB:L04572, SP:P28689, GB:L05381, PID:145787, PID:146393, GB:U00096, PID:1736484, and PID:1788147; identified by sequence similarity; putative; ssDNA-binding protein 304452 ssb 2551960 ssb Porphyromonas gingivalis W83 ssDNA-binding protein NP_904592.1 303982 D 242619 CDS NP_904593.1 34540114 2551961 304539..305798 1 NC_002950.2 similar to GP:9837392, and GP:12024595; identified by sequence similarity; putative; hypothetical protein 305798 2551961 PG0272 Porphyromonas gingivalis W83 hypothetical protein NP_904593.1 304539 D 242619 CDS NP_904594.1 34540115 2551840 305834..306430 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00556; 4'-phosphopantetheinyl transferase 306430 2551840 PG0273 Porphyromonas gingivalis W83 4'-phosphopantetheinyl transferase NP_904594.1 305834 D 242619 CDS NP_904595.1 34540116 2551956 306473..306841 1 NC_002950.2 hypothetical protein 306841 2551956 PG0274 Porphyromonas gingivalis W83 hypothetical protein NP_904595.1 306473 D 242619 CDS NP_904596.1 34540117 2551958 complement(307045..307554) 1 NC_002950.2 similar to SP:P31092, GB:M34046, GB:M61886, GB:J04129, and SP:P09466; identified by sequence similarity; putative; thioredoxin family protein 307554 2551958 PG0275 Porphyromonas gingivalis W83 thioredoxin family protein NP_904596.1 307045 R 242619 CDS NP_904597.1 34540118 2551823 complement(307692..308879) 1 NC_002950.2 similar to GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; putative; hypothetical protein 308879 2551823 PG0276 Porphyromonas gingivalis W83 hypothetical protein NP_904597.1 307692 R 242619 CDS NP_904598.1 34540119 2551955 308996..310126 1 NC_002950.2 similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase 310126 2551955 PG0277 Porphyromonas gingivalis W83 ISPg2, transposase NP_904598.1 308996 D 242619 CDS NP_904599.1 34540120 2551954 310187..310537 1 NC_002950.2 hypothetical protein 310537 2551954 PG0278 Porphyromonas gingivalis W83 hypothetical protein NP_904599.1 310187 D 242619 CDS NP_904600.1 34540121 2551819 complement(310765..313044) 1 NC_002950.2 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 313044 maeB 2551819 maeB Porphyromonas gingivalis W83 malic enzyme NP_904600.1 310765 R 242619 CDS NP_904601.1 34540122 2551951 complement(313387..314715) 1 NC_002950.2 ABC transporter permease 314715 2551951 PG0280 Porphyromonas gingivalis W83 ABC transporter permease NP_904601.1 313387 R 242619 CDS NP_904602.1 34540123 2551952 complement(314737..316113) 1 NC_002950.2 ABC transporter permease 316113 2551952 PG0281 Porphyromonas gingivalis W83 ABC transporter permease NP_904602.1 314737 R 242619 CDS NP_904603.1 34540124 2551724 complement(316334..317005) 1 NC_002950.2 similar to GB:Z27456, GB:Z29610, GB:Z29611, GB:Z30082, GB:Z18918, PID:1335183, PID:505397, PID:553415, PID:553456, PID:598160, PID:780285, and PID:860980; identified by sequence similarity; putative; ABC transporter ATP-binding protein 317005 2551724 PG0282 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_904603.1 316334 R 242619 CDS NP_904604.1 34540125 2551953 complement(317085..318335) 1 NC_002950.2 similar to GB:D28503, PID:556484, and SP:Q59295; identified by sequence similarity; putative; RND family efflux transporter MFP subunit 318335 2551953 PG0283 Porphyromonas gingivalis W83 RND family efflux transporter MFP subunit NP_904604.1 317085 R 242619 CDS NP_904605.1 34540126 2551950 318599..320104 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01692; hypothetical protein 320104 2551950 PG0285 Porphyromonas gingivalis W83 hypothetical protein NP_904605.1 318599 D 242619 CDS NP_904606.1 34540127 2551804 320257..320514 1 NC_002950.2 hypothetical protein 320514 2551804 PG0286 Porphyromonas gingivalis W83 hypothetical protein NP_904606.1 320257 D 242619 CDS NP_904607.1 34540128 2551947 320597..321538 1 NC_002950.2 hypothetical protein 321538 2551947 PG0287 Porphyromonas gingivalis W83 hypothetical protein NP_904607.1 320597 D 242619 CDS NP_904608.1 34540129 2551949 321595..323070 1 NC_002950.2 putative lipoprotein 323070 2551949 PG0288 Porphyromonas gingivalis W83 putative lipoprotein NP_904608.1 321595 D 242619 CDS NP_904609.1 34540130 2551803 323000..324040 1 NC_002950.2 hypothetical protein 324040 2551803 PG0289 Porphyromonas gingivalis W83 hypothetical protein NP_904609.1 323000 D 242619 CDS NP_904610.1 34540131 2551948 324044..325594 1 NC_002950.2 hypothetical protein 325594 2551948 PG0290 Porphyromonas gingivalis W83 hypothetical protein NP_904610.1 324044 D 242619 CDS NP_904611.1 34540132 2551946 325597..326682 1 NC_002950.2 hypothetical protein 326682 2551946 PG0291 Porphyromonas gingivalis W83 hypothetical protein NP_904611.1 325597 D 242619 CDS NP_904612.1 34540133 2551938 complement(328183..328761) 1 NC_002950.2 similar to GB:M76558, PID:179752, and PID:179764; identified by sequence similarity; putative; secretion activator protein 328761 2551938 PG0293 Porphyromonas gingivalis W83 secretion activator protein NP_904612.1 328183 R 242619 CDS NP_904613.1 34540134 2551794 complement(329361..330251) 1 NC_002950.2 glycosyl transferase group 2 family protein 330251 2551794 PG0294 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_904613.1 329361 R 242619 CDS NP_904614.1 34540135 2551943 complement(330266..331390) 1 NC_002950.2 similar to GB:M33916, GB:M37840, PID:1008917, PID:1008919, PID:149926, and PID:149976; identified by sequence similarity; putative; DNA processing protein DprA 331390 dprA 2551943 dprA Porphyromonas gingivalis W83 DNA processing protein DprA NP_904614.1 330266 R 242619 CDS NP_904615.1 34540136 2551944 complement(331383..335087) 1 NC_002950.2 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 335087 2551944 PG0296 Porphyromonas gingivalis W83 phosphoribosylformylglycinamidine synthase NP_904615.1 331383 R 242619 CDS NP_904616.1 34540137 2551789 complement(335387..335608) 1 NC_002950.2 hypothetical protein 335608 2551789 PG0297 Porphyromonas gingivalis W83 hypothetical protein NP_904616.1 335387 R 242619 CDS NP_904617.1 34540138 2551940 336710..338002 1 NC_002950.2 hypothetical protein 338002 2551940 PG0300 Porphyromonas gingivalis W83 hypothetical protein NP_904617.1 336710 D 242619 CDS NP_904618.1 34540139 2551936 338359..338781 1 NC_002950.2 hypothetical protein 338781 2551936 PG0302 Porphyromonas gingivalis W83 hypothetical protein NP_904618.1 338359 D 242619 CDS NP_904619.1 34540140 2551845 338791..339663 1 NC_002950.2 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 339663 2551845 PG0303 Porphyromonas gingivalis W83 ferredoxin NP_904619.1 338791 D 242619 CDS NP_904620.1 34540141 2551939 339699..341030 1 NC_002950.2 similar to GB:X69604, PID:436326, and PID:928987; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit C 341030 2551939 PG0304 Porphyromonas gingivalis W83 RnfABCDGE type electron transport complex subunit C NP_904620.1 339699 D 242619 CDS NP_904621.1 34540142 2551937 341046..342029 1 NC_002950.2 similar to GB:X71398, GB:X69601, GB:X69603, PID:436320, PID:436324, and PID:436406; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit D 342029 2551937 PG0305 Porphyromonas gingivalis W83 RnfABCDGE type electron transport complex subunit D NP_904621.1 341046 D 242619 CDS NP_904622.1 34540143 2551917 342056..342703 1 NC_002950.2 similar to GB:S66431, SP:P29375, GB:M85252, and PID:155352; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit G 342703 2551917 PG0306 Porphyromonas gingivalis W83 RnfABCDGE type electron transport complex subunit G NP_904622.1 342056 D 242619 CDS NP_904623.1 34540144 2551703 342700..343290 1 NC_002950.2 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 343290 2551703 PG0307 Porphyromonas gingivalis W83 electron transport complex protein RsxE NP_904623.1 342700 D 242619 CDS NP_904624.1 34540145 2551704 343315..343887 1 NC_002950.2 similar to GB:M22902, SP:P40768, PID:143674, GB:X58072, GB:M69106, GB:X55037, SP:P23771, PID:31662, PID:31664, and PID:31666; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit A 343887 2551704 PG0308 Porphyromonas gingivalis W83 RnfABCDGE type electron transport complex subunit A NP_904624.1 343315 D 242619 CDS NP_904625.1 34540146 2551699 complement(344100..345113) 1 NC_002950.2 thiamine biosynthesis lipoprotein ApbE 345113 apbE 2551699 apbE Porphyromonas gingivalis W83 thiamine biosynthesis lipoprotein ApbE NP_904625.1 344100 R 242619 CDS NP_904626.1 34540147 2551705 complement(345110..345649) 1 NC_002950.2 similar to SP:P37718, GB:X54676, and PID:580743; identified by sequence similarity; putative; nitroreductase 345649 2551705 PG0310 Porphyromonas gingivalis W83 nitroreductase NP_904626.1 345110 R 242619 CDS NP_904627.1 34540148 2551706 complement(345649..346602) 1 NC_002950.2 similar to GB:L25659, SP:P29486, GB:X64098, PID:398397, PID:409772, PID:48405, SP:P37828, and PID:901847; identified by sequence similarity; putative; glycosyl transferase group 2 family protein 346602 2551706 PG0311 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_904627.1 345649 R 242619 CDS NP_904628.1 34540149 2551683 complement(346599..347138) 1 NC_002950.2 hypothetical protein 347138 2551683 PG0312 Porphyromonas gingivalis W83 hypothetical protein NP_904628.1 346599 R 242619 CDS NP_904629.1 34540150 2551707 347506..347814 1 NC_002950.2 hypothetical protein 347814 2551707 PG0313 Porphyromonas gingivalis W83 hypothetical protein NP_904629.1 347506 D 242619 CDS NP_904630.2 161579533 2551708 347875..348192 1 NC_002950.2 similar to GB:X03072, SP:P04628, and PID:33936; identified by sequence similarity; putative; 50S ribosomal protein L21 348192 rplU 2551708 rplU Porphyromonas gingivalis W83 50S ribosomal protein L21 NP_904630.2 347875 D 242619 CDS NP_904631.1 34540152 2551693 348220..348477 1 NC_002950.2 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 348477 rpmA 2551693 rpmA Porphyromonas gingivalis W83 50S ribosomal protein L27 NP_904631.1 348220 D 242619 CDS NP_904632.1 34540153 2551709 348577..349848 1 NC_002950.2 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 349848 serS 2551709 serS Porphyromonas gingivalis W83 seryl-tRNA synthetase NP_904632.1 348577 D 242619 CDS NP_904633.1 34540154 2551710 complement(349861..352521) 1 NC_002950.2 M49 family peptidase 352521 2551710 PG0317 Porphyromonas gingivalis W83 M49 family peptidase NP_904633.1 349861 R 242619 CDS NP_904634.1 34540155 2551688 353089..353517 1 NC_002950.2 identified by match to PFAM protein family HMM PF04975; hypothetical protein 353517 2551688 PG0319 Porphyromonas gingivalis W83 hypothetical protein NP_904634.1 353089 D 242619 CDS NP_904635.1 34540156 2551712 353549..354637 1 NC_002950.2 hypothetical protein 354637 2551712 PG0320 Porphyromonas gingivalis W83 hypothetical protein NP_904635.1 353549 D 242619 CDS NP_904636.1 34540157 2551897 354788..355819 1 NC_002950.2 functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 355819 2551897 PG0321 Porphyromonas gingivalis W83 arginine/ornithine transport system ATPase NP_904636.1 354788 D 242619 CDS NP_904637.1 34540158 2551681 355848..357026 1 NC_002950.2 similar to GB:U01100, and PID:434022; identified by sequence similarity; putative; serine/threonine transporter 357026 2551681 PG0322 Porphyromonas gingivalis W83 serine/threonine transporter NP_904637.1 355848 D 242619 CDS NP_904638.1 34540159 2551916 complement(357149..357478) 1 NC_002950.2 hypothetical protein 357478 2551916 PG0323 Porphyromonas gingivalis W83 hypothetical protein NP_904638.1 357149 R 242619 CDS NP_904639.1 34540160 2551871 complement(357679..359172) 1 NC_002950.2 similar to GB:D13563, and PID:216220; identified by sequence similarity; putative; histidine ammonia-lyase 359172 hutH 2551871 hutH Porphyromonas gingivalis W83 histidine ammonia-lyase NP_904639.1 357679 R 242619 CDS NP_904640.1 34540161 2551675 complement(359175..359804) 1 NC_002950.2 similar to GB:X76383, PID:434360, GB:X76383, and PID:434360; identified by sequence similarity; putative; hypothetical protein 359804 2551675 PG0325 Porphyromonas gingivalis W83 hypothetical protein NP_904640.1 359175 R 242619 CDS NP_904641.1 34540162 2551883 complement(359829..361064) 1 NC_002950.2 hypothetical protein 361064 2551883 PG0326 Porphyromonas gingivalis W83 hypothetical protein NP_904641.1 359829 R 242619 CDS NP_904642.1 34540163 2551909 complement(360997..362151) 1 NC_002950.2 hypothetical protein 362151 2551909 PG0327 Porphyromonas gingivalis W83 hypothetical protein NP_904642.1 360997 R 242619 CDS NP_904643.1 34540164 2551671 complement(362245..363516) 1 NC_002950.2 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 363516 hutI 2551671 hutI Porphyromonas gingivalis W83 imidazolonepropionase NP_904643.1 362245 R 242619 CDS NP_904644.1 34540165 2551886 complement(363617..364519) 1 NC_002950.2 similar to GB:M22589, SP:P13423, and PID:143282; identified by sequence similarity; putative; formiminotransferase-cyclodeaminase-like protein 364519 2551886 PG0329 Porphyromonas gingivalis W83 formiminotransferase-cyclodeaminase-like protein NP_904644.1 363617 R 242619 CDS NP_904645.1 34540166 2551910 complement(364568..365083) 1 NC_002950.2 similar to GB:L05147, SP:P51452, and PID:181840; identified by sequence similarity; putative; histone-like family DNA-binding protein 365083 2551910 PG0330 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_904645.1 364568 R 242619 CDS NP_904646.1 34540167 2551665 365759..367735 1 NC_002950.2 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 367735 rho 2551665 rho Porphyromonas gingivalis W83 transcription termination factor Rho NP_904646.1 365759 D 242619 CDS NP_904647.1 34540168 2551914 367963..368871 1 NC_002950.2 hypothetical protein 368871 2551914 PG0333 Porphyromonas gingivalis W83 hypothetical protein NP_904647.1 367963 D 242619 CDS NP_904648.1 34540169 2551913 complement(368882..369841) 1 NC_002950.2 similar to SP:P10245; identified by sequence similarity; putative; glycosyl transferase group 2 family protein 369841 2551913 PG0334 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_904648.1 368882 R 242619 CDS NP_904649.1 34540170 2551663 complement(369894..370796) 1 NC_002950.2 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 370796 miaA 2551663 miaA Porphyromonas gingivalis W83 tRNA delta(2)-isopentenylpyrophosphate transferase NP_904649.1 369894 R 242619 CDS NP_904650.1 34540171 2551630 complement(370813..371382) 1 NC_002950.2 hypothetical protein 371382 2551630 PG0336 Porphyromonas gingivalis W83 hypothetical protein NP_904650.1 370813 R 242619 CDS NP_904651.1 34540172 2551627 complement(371467..371619) 1 NC_002950.2 hypothetical protein 371619 2551627 PG0337 Porphyromonas gingivalis W83 hypothetical protein NP_904651.1 371467 R 242619 CDS NP_904652.1 34540173 2551660 371670..375197 1 NC_002950.2 hypothetical protein 375197 2551660 PG0338 Porphyromonas gingivalis W83 hypothetical protein NP_904652.1 371670 D 242619 CDS NP_904653.1 34540174 2551931 375202..375747 1 NC_002950.2 hypothetical protein 375747 2551931 PG0339 Porphyromonas gingivalis W83 hypothetical protein NP_904653.1 375202 D 242619 CDS NP_904654.1 34540175 2551902 376206..376496 1 NC_002950.2 hypothetical protein 376496 2551902 PG0340 Porphyromonas gingivalis W83 hypothetical protein NP_904654.1 376206 D 242619 CDS NP_904655.1 34540176 2551655 complement(377271..378452) 1 NC_002950.2 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase 378452 megL 2551655 megL Porphyromonas gingivalis W83 methionine gamma-lyase NP_904655.1 377271 R 242619 CDS NP_904656.1 34540177 2551905 complement(378633..380102) 1 NC_002950.2 purple acid phosphatase 380102 2551905 PG0344 Porphyromonas gingivalis W83 purple acid phosphatase NP_904656.1 378633 R 242619 CDS NP_904657.1 34540178 2551628 complement(380105..380698) 1 NC_002950.2 hypothetical protein 380698 2551628 PG0345 Porphyromonas gingivalis W83 hypothetical protein NP_904657.1 380105 R 242619 CDS NP_904658.1 34540179 2551650 380799..381404 1 NC_002950.2 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 381404 engB 2551650 engB Porphyromonas gingivalis W83 ribosome biogenesis GTP-binding protein YsxC NP_904658.1 380799 D 242619 CDS NP_904659.1 34540180 2551890 381414..382442 1 NC_002950.2 similar to GB:M31516, GB:M30142, SP:P08174, and PID:181476; identified by sequence similarity; putative; UDP-glucose 4-epimerase 382442 galE 2551890 galE Porphyromonas gingivalis W83 UDP-glucose 4-epimerase NP_904659.1 381414 D 242619 CDS NP_904660.1 34540181 2551617 382485..384581 1 NC_002950.2 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 384581 recG 2551617 recG Porphyromonas gingivalis W83 ATP-dependent DNA helicase RecG NP_904660.1 382485 D 242619 CDS NP_904661.1 34540182 2551648 384599..385351 1 NC_002950.2 similar to SP:Q05426, and PID:150149; identified by sequence similarity; putative; HAD superfamily hydrolase 385351 2551648 PG0349 Porphyromonas gingivalis W83 HAD superfamily hydrolase NP_904661.1 384599 D 242619 CDS NP_904662.1 34540183 2551891 complement(385446..386900) 1 NC_002950.2 internalin-like protein 386900 2551891 PG0350 Porphyromonas gingivalis W83 internalin-like protein NP_904662.1 385446 R 242619 CDS NP_904663.1 34540184 2551601 386914..387174 1 NC_002950.2 hypothetical protein 387174 2551601 PG0351 Porphyromonas gingivalis W83 hypothetical protein NP_904663.1 386914 D 242619 CDS NP_904664.1 34540185 2551624 387327..388907 1 NC_002950.2 similar to GB:L04751, SP:Q02928, PID:181397, PID:535787, PID:994758, GB:L04751, SP:Q02928, PID:181397, PID:535787, and PID:994758; identified by sequence similarity; putative; sialidase 388907 2551624 PG0352 Porphyromonas gingivalis W83 sialidase NP_904664.1 387327 D 242619 CDS NP_904665.1 34540186 2551915 complement(389221..389373) 1 NC_002950.2 hypothetical protein 389373 2551915 PG0354 Porphyromonas gingivalis W83 hypothetical protein NP_904665.1 389221 R 242619 CDS NP_904666.1 34540187 2551592 389784..390767 1 NC_002950.2 hypothetical protein 390767 2551592 PG0355 Porphyromonas gingivalis W83 hypothetical protein NP_904666.1 389784 D 242619 CDS NP_904667.1 34540188 2551920 390751..391533 1 NC_002950.2 hypothetical protein 391533 2551920 PG0356 Porphyromonas gingivalis W83 hypothetical protein NP_904667.1 390751 D 242619 CDS NP_904668.1 34540189 2551619 391580..392494 1 NC_002950.2 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 392494 pyrB 2551619 pyrB Porphyromonas gingivalis W83 aspartate carbamoyltransferase NP_904668.1 391580 D 242619 CDS NP_904669.1 34540190 2551588 392507..392962 1 NC_002950.2 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 392962 pyrI 2551588 pyrI Porphyromonas gingivalis W83 aspartate carbamoyltransferase NP_904669.1 392507 D 242619 CDS NP_904670.1 34540191 2551918 392991..393578 1 NC_002950.2 identified by match to PFAM protein family HMM PF01613; flavin reductase domain-containing protein 393578 2551918 PG0359 Porphyromonas gingivalis W83 flavin reductase domain-containing protein NP_904670.1 392991 D 242619 CDS NP_904671.1 34540192 2551622 393622..394212 1 NC_002950.2 similar to GB:S46950, SP:P29274, GB:U20231, PID:1117998, PID:177892, and PID:400452; identified by sequence similarity; putative; hypothetical protein 394212 2551622 PG0360 Porphyromonas gingivalis W83 hypothetical protein NP_904671.1 393622 D 242619 CDS NP_904672.1 34540193 2551576 394234..395541 1 NC_002950.2 similar to SP:P37742, GB:L11721, SP:P24175, GB:M77127, PID:147165, PID:304879, PID:415624, GB:U00096, PID:1407617, PID:1736750, PID:1736754, and PID:1788361; identified by sequence similarity; putative; hypothetical protein 395541 2551576 PG0361 Porphyromonas gingivalis W83 hypothetical protein NP_904672.1 394234 D 242619 CDS NP_904673.1 34540194 2551921 395441..397609 1 NC_002950.2 hypothetical protein 397609 2551921 PG0362 Porphyromonas gingivalis W83 hypothetical protein NP_904673.1 395441 D 242619 CDS NP_904674.1 34540195 2551618 397610..398437 1 NC_002950.2 hypothetical protein 398437 2551618 PG0363 Porphyromonas gingivalis W83 hypothetical protein NP_904674.1 397610 D 242619 CDS NP_904675.1 34540196 2551572 complement(398500..399705) 1 NC_002950.2 hypothetical protein 399705 2551572 PG0364 Porphyromonas gingivalis W83 hypothetical protein NP_904675.1 398500 R 242619 CDS NP_904676.1 34540197 2551888 complement(399702..400268) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01612; 3'-5' exonuclease 400268 2551888 PG0365 Porphyromonas gingivalis W83 3'-5' exonuclease NP_904676.1 399702 R 242619 CDS NP_904677.1 34540198 2551922 complement(400345..400905) 1 NC_002950.2 hypothetical protein 400905 2551922 PG0366 Porphyromonas gingivalis W83 hypothetical protein NP_904677.1 400345 R 242619 CDS NP_904678.1 34540199 2551569 401385..403319 1 NC_002950.2 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 403319 2551569 PG0368 Porphyromonas gingivalis W83 DNA topoisomerase IV subunit B NP_904678.1 401385 D 242619 CDS NP_904679.1 34540200 2551933 403350..403811 1 NC_002950.2 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 403811 coaD 2551933 coaD Porphyromonas gingivalis W83 phosphopantetheine adenylyltransferase NP_904679.1 403350 D 242619 CDS NP_904680.1 34540201 2551613 404183..404284 1 NC_002950.2 hypothetical protein 404284 2551613 PG0371 Porphyromonas gingivalis W83 hypothetical protein NP_904680.1 404183 D 242619 CDS NP_904681.1 34540202 2551901 404845..405513 1 NC_002950.2 hypothetical protein 405513 2551901 PG0373 Porphyromonas gingivalis W83 hypothetical protein NP_904681.1 404845 D 242619 CDS NP_904682.1 34540203 2551926 complement(405538..405654) 1 NC_002950.2 hypothetical protein 405654 2551926 PG0374 Porphyromonas gingivalis W83 hypothetical protein NP_904682.1 405538 R 242619 CDS NP_904683.1 34540204 2551925 406074..406529 1 NC_002950.2 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 406529 rplM 2551925 rplM Porphyromonas gingivalis W83 50S ribosomal protein L13 NP_904683.1 406074 D 242619 CDS NP_904684.1 34540205 2551892 406539..406925 1 NC_002950.2 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 406925 rpsI 2551892 rpsI Porphyromonas gingivalis W83 30S ribosomal protein S9 NP_904684.1 406539 D 242619 CDS NP_904685.1 34540206 2551924 407060..407905 1 NC_002950.2 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 407905 rpsB 2551924 rpsB Porphyromonas gingivalis W83 30S ribosomal protein S2 NP_904685.1 407060 D 242619 CDS NP_904686.1 34540207 2551929 408044..408868 1 NC_002950.2 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 408868 tsf 2551929 tsf Porphyromonas gingivalis W83 elongation factor Ts NP_904686.1 408044 D 242619 CDS NP_904687.1 34540208 2551907 409242..411278 1 NC_002950.2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 411278 uvrB 2551907 uvrB Porphyromonas gingivalis W83 excinuclease ABC subunit B NP_904687.1 409242 D 242619 CDS NP_904688.1 34540209 2551911 complement(411275..412795) 1 NC_002950.2 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 412795 2551911 PG0381 Porphyromonas gingivalis W83 potassium/proton antiporter NP_904688.1 411275 R 242619 CDS NP_904689.1 34540210 2551928 413331..414803 1 NC_002950.2 similar to GP:17430597; identified by sequence similarity; putative; hypothetical protein 414803 2551928 PG0382 Porphyromonas gingivalis W83 hypothetical protein NP_904689.1 413331 D 242619 CDS NP_904690.1 34540211 2551570 414906..416225 1 NC_002950.2 membrane-associated zinc metalloprotease 416225 2551570 PG0383 Porphyromonas gingivalis W83 membrane-associated zinc metalloprotease NP_904690.1 414906 D 242619 CDS NP_904691.1 34540212 2551927 416235..418757 1 NC_002950.2 Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.; similar to SP:P07324, and PID:40563; identified by sequence similarity; putative; MutS2 family protein 418757 2551927 PG0384 Porphyromonas gingivalis W83 MutS2 family protein NP_904691.1 416235 D 242619 CDS NP_904692.1 34540213 2551903 418919..419110 1 NC_002950.2 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 419110 rpsU 2551903 rpsU Porphyromonas gingivalis W83 30S ribosomal protein S21 NP_904692.1 418919 D 242619 CDS NP_904693.1 34540214 2551578 419187..420389 1 NC_002950.2 phage integrase site specific recombinase 420389 2551578 PG0386 Porphyromonas gingivalis W83 phage integrase site specific recombinase NP_904693.1 419187 D 242619 CDS NP_904694.1 34540215 2551600 420783..421970 1 NC_002950.2 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 421970 tuf 2551600 tuf Porphyromonas gingivalis W83 elongation factor Tu NP_904694.1 420783 D 242619 CDS NP_904695.1 34540216 2551597 422354..422893 1 NC_002950.2 similar to GB:L13858, PID:1220368, and PID:306780; identified by sequence similarity; putative; transcription antitermination protein NusG 422893 nusG 2551597 nusG Porphyromonas gingivalis W83 transcription antitermination protein NusG NP_904695.1 422354 D 242619 CDS NP_904696.1 34540217 2551589 422962..423399 1 NC_002950.2 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 423399 rplK 2551589 rplK Porphyromonas gingivalis W83 50S ribosomal protein L11 NP_904696.1 422962 D 242619 CDS NP_904697.1 34540218 2551593 423420..424118 1 NC_002950.2 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 424118 rplA 2551593 rplA Porphyromonas gingivalis W83 50S ribosomal protein L1 NP_904697.1 423420 D 242619 CDS NP_904698.1 34540219 2551584 424134..424658 1 NC_002950.2 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 424658 rplJ 2551584 rplJ Porphyromonas gingivalis W83 50S ribosomal protein L10 NP_904698.1 424134 D 242619 CDS NP_904699.1 34540220 2551575 424700..425077 1 NC_002950.2 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 425077 rplL 2551575 rplL Porphyromonas gingivalis W83 50S ribosomal protein L7/L12 NP_904699.1 424700 D 242619 CDS NP_904700.1 34540221 2551568 425189..428998 1 NC_002950.2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 428998 rpoB 2551568 rpoB Porphyromonas gingivalis W83 DNA-directed RNA polymerase subunit beta NP_904700.1 425189 D 242619 CDS NP_904701.1 34540222 2551908 429064..433365 1 NC_002950.2 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 433365 rpoC 2551908 rpoC Porphyromonas gingivalis W83 DNA-directed RNA polymerase subunit beta' NP_904701.1 429064 D 242619 CDS NP_904702.1 34540223 2551906 433653..434351 1 NC_002950.2 similar to GB:L07499, SP:P34918, and PID:410113; identified by sequence similarity; putative; Crp/FNR family transcriptional regulator 434351 2551906 PG0396 Porphyromonas gingivalis W83 Crp/FNR family transcriptional regulator NP_904702.1 433653 D 242619 CDS NP_904703.1 34540224 2551912 complement(434402..434692) 1 NC_002950.2 hypothetical protein 434692 2551912 PG0397 Porphyromonas gingivalis W83 hypothetical protein NP_904703.1 434402 R 242619 CDS NP_904704.1 34540225 2551893 complement(434706..435800) 1 NC_002950.2 similar to GB:S45332, GB:M34986, SP:P19235, PID:182134, PID:182201, PID:182245, PID:553281, GB:S45332, GB:M34986, SP:P19235, PID:182134, PID:182201, PID:182245, and PID:553281; identified by sequence similarity; putative; recF protein 435800 recF 2551893 recF Porphyromonas gingivalis W83 recF protein NP_904704.1 434706 R 242619 CDS NP_904705.1 34540226 2551894 complement(435797..436327) 1 NC_002950.2 putative lipoprotein 436327 2551894 PG0399 Porphyromonas gingivalis W83 putative lipoprotein NP_904705.1 435797 R 242619 CDS NP_904706.1 34540227 2551567 complement(436335..437618) 1 NC_002950.2 hypothetical protein 437618 2551567 PG0400 Porphyromonas gingivalis W83 hypothetical protein NP_904706.1 436335 R 242619 CDS NP_904707.1 34540228 2551571 complement(437855..439396) 1 NC_002950.2 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 439396 2551571 PG0401 Porphyromonas gingivalis W83 phosphodiesterase NP_904707.1 437855 R 242619 CDS NP_904708.1 34540229 2551579 complement(439543..439851) 1 NC_002950.2 identified by match to PFAM protein family HMM PF05164; hypothetical protein 439851 2551579 PG0403 Porphyromonas gingivalis W83 hypothetical protein NP_904708.1 439543 R 242619 CDS NP_904709.1 34540230 2551580 complement(439858..440196) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01682; hypothetical protein 440196 2551580 PG0404 Porphyromonas gingivalis W83 hypothetical protein NP_904709.1 439858 R 242619 CDS NP_904710.1 34540231 2551574 complement(441042..441575) 1 NC_002950.2 hypothetical protein 441575 2551574 PG0408 Porphyromonas gingivalis W83 hypothetical protein NP_904710.1 441042 R 242619 CDS NP_904711.1 34540232 2551591 441589..442410 1 NC_002950.2 hypothetical protein 442410 2551591 PG0409 Porphyromonas gingivalis W83 hypothetical protein NP_904711.1 441589 D 242619 CDS NP_904712.1 34540233 2551594 442757..446641 1 NC_002950.2 hypothetical protein 446641 2551594 PG0410 Porphyromonas gingivalis W83 hypothetical protein NP_904712.1 442757 D 242619 CDS NP_904713.1 34540234 2551598 446641..449418 1 NC_002950.2 similar to GP:10954334, and GP:2182812; identified by sequence similarity; putative; hemagglutinin 449418 2551598 PG0411 Porphyromonas gingivalis W83 hemagglutinin NP_904713.1 446641 D 242619 CDS NP_904714.1 34540235 2551596 complement(449674..451530) 1 NC_002950.2 similar to SP:P14160, GB:M33208, GB:M33209, GB:M33210, SP:P09619, and PID:532593; identified by sequence similarity; putative; DNA mismatch repair protein MutL 451530 mutL 2551596 mutL Porphyromonas gingivalis W83 DNA mismatch repair protein MutL NP_904714.1 449674 R 242619 CDS NP_904715.1 34540236 2551599 complement(451527..451871) 1 NC_002950.2 hypothetical protein 451871 2551599 PG0413 Porphyromonas gingivalis W83 hypothetical protein NP_904715.1 451527 R 242619 CDS NP_904716.1 34540237 2551602 complement(451862..453742) 1 NC_002950.2 hypothetical protein 453742 2551602 PG0414 Porphyromonas gingivalis W83 hypothetical protein NP_904716.1 451862 R 242619 CDS NP_904717.1 34540238 2551604 complement(453804..455186) 1 NC_002950.2 PpiC-type peptidyl-prolyl cis-trans isomerase 455186 2551604 PG0415 Porphyromonas gingivalis W83 PpiC-type peptidyl-prolyl cis-trans isomerase NP_904717.1 453804 R 242619 CDS NP_904718.1 34540239 2551603 complement(455223..457400) 1 NC_002950.2 ATP-dependent DNA helicase RecQ 457400 recQ-1 2551603 recQ-1 Porphyromonas gingivalis W83 ATP-dependent DNA helicase RecQ NP_904718.1 455223 R 242619 CDS NP_904719.1 34540240 2551605 complement(457479..458714) 1 NC_002950.2 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 458714 clpX 2551605 clpX Porphyromonas gingivalis W83 ATP-dependent protease ATP-binding subunit ClpX NP_904719.1 457479 R 242619 CDS NP_904720.1 34540241 2551607 complement(458751..459419) 1 NC_002950.2 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 459419 clpP 2551607 clpP Porphyromonas gingivalis W83 ATP-dependent Clp protease proteolytic subunit NP_904720.1 458751 R 242619 CDS NP_904721.1 34540242 2551611 complement(459792..460697) 1 NC_002950.2 hypothetical protein 460697 2551611 PG0419 Porphyromonas gingivalis W83 hypothetical protein NP_904721.1 459792 R 242619 CDS NP_904722.1 34540243 2551612 complement(460926..461783) 1 NC_002950.2 hypothetical protein 461783 2551612 PG0421 Porphyromonas gingivalis W83 hypothetical protein NP_904722.1 460926 R 242619 CDS NP_904723.1 34540244 2551606 complement(462021..462392) 1 NC_002950.2 hypothetical protein 462392 2551606 PG0422 Porphyromonas gingivalis W83 hypothetical protein NP_904723.1 462021 R 242619 CDS NP_904724.1 34540245 2551614 462391..462633 1 NC_002950.2 hypothetical protein 462633 2551614 PG0423 Porphyromonas gingivalis W83 hypothetical protein NP_904724.1 462391 D 242619 CDS NP_904725.1 34540246 2551623 462608..463273 1 NC_002950.2 hypothetical protein 463273 2551623 PG0424 Porphyromonas gingivalis W83 hypothetical protein NP_904725.1 462608 D 242619 CDS NP_904726.1 34540247 2551620 complement(463309..464079) 1 NC_002950.2 similar to GB:M13994, GB:M13995, GB:M14745, GB:L21669, GB:L21667, GB:L21668, GB:S72602, GB:M13415, GB:M15878, SP:P10415, SP:P10416, and PID:179369; identified by sequence similarity; putative; esterase 464079 2551620 PG0425 Porphyromonas gingivalis W83 esterase NP_904726.1 463309 R 242619 CDS NP_904727.1 34540248 2551625 complement(464250..465188) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 465188 2551625 PG0426 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_904727.1 464250 R 242619 CDS NP_904728.1 34540249 2551629 complement(465242..465631) 1 NC_002950.2 ISPg5, transposase Orf1 465631 2551629 PG0427 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_904728.1 465242 R 242619 CDS NP_904729.1 34540250 2551631 complement(465843..466067) 1 NC_002950.2 hypothetical protein 466067 2551631 PG0428 Porphyromonas gingivalis W83 hypothetical protein NP_904729.1 465843 R 242619 CDS NP_904730.1 34540251 2551633 466240..468099 1 NC_002950.2 pyruvate synthase 468099 2551633 PG0429 Porphyromonas gingivalis W83 pyruvate synthase NP_904730.1 466240 D 242619 CDS NP_904731.1 34540252 2551632 468126..469133 1 NC_002950.2 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 469133 2551632 PG0430 Porphyromonas gingivalis W83 2-oxoglutarate ferredoxin oxidoreductase subunit beta NP_904731.1 468126 D 242619 CDS NP_904732.1 34540253 2551634 469118..469234 1 NC_002950.2 hypothetical protein 469234 2551634 PG0431 Porphyromonas gingivalis W83 hypothetical protein NP_904732.1 469118 D 242619 CDS NP_904733.1 34540254 2551639 complement(469363..470769) 1 NC_002950.2 similar to SP:P08486, and PID:153155; identified by sequence similarity; putative; NOL1/NOP2/sun family protein 470769 2551639 PG0432 Porphyromonas gingivalis W83 NOL1/NOP2/sun family protein NP_904733.1 469363 R 242619 CDS NP_904734.1 34540255 2551638 complement(470773..471486) 1 NC_002950.2 similar to GB:L11577; identified by sequence similarity; putative; tetrapyrrole methylase 471486 2551638 PG0433 Porphyromonas gingivalis W83 tetrapyrrole methylase NP_904734.1 470773 R 242619 CDS NP_904735.1 34540256 2551419 complement(471524..472603) 1 NC_002950.2 hypothetical protein 472603 2551419 PG0434 Porphyromonas gingivalis W83 hypothetical protein NP_904735.1 471524 R 242619 CDS NP_904736.1 34540257 2551635 complement(472798..473541) 1 NC_002950.2 capsular polysaccharide biosynthesis protein 473541 2551635 PG0435 Porphyromonas gingivalis W83 capsular polysaccharide biosynthesis protein NP_904736.1 472798 R 242619 CDS NP_904737.1 34540258 2551640 complement(473551..476019) 1 NC_002950.2 capsular polysaccharide transport protein 476019 2551640 PG0436 Porphyromonas gingivalis W83 capsular polysaccharide transport protein NP_904737.1 473551 R 242619 CDS NP_904738.1 34540259 2551641 complement(476044..476967) 1 NC_002950.2 similar to SP:P17161, GB:X03147, PID:43926, SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; putative; BexD/CtrA/VexA family polysaccharide export protein 476967 2551641 PG0437 Porphyromonas gingivalis W83 BexD/CtrA/VexA family polysaccharide export protein NP_904738.1 476044 R 242619 CDS NP_904739.1 34540260 2551642 477024..477974 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01200; hypothetical protein 477974 2551642 PG0438 Porphyromonas gingivalis W83 hypothetical protein NP_904739.1 477024 D 242619 CDS NP_904740.1 34540261 2551626 477971..478870 1 NC_002950.2 hypothetical protein 478870 2551626 PG0439 Porphyromonas gingivalis W83 hypothetical protein NP_904740.1 477971 D 242619 CDS NP_904741.1 34540262 2551653 478874..481507 1 NC_002950.2 hypothetical protein 481507 2551653 PG0441 Porphyromonas gingivalis W83 hypothetical protein NP_904741.1 478874 D 242619 CDS NP_904742.1 34540263 2551656 complement(481604..481972) 1 NC_002950.2 hypothetical protein 481972 2551656 PG0442 Porphyromonas gingivalis W83 hypothetical protein NP_904742.1 481604 R 242619 CDS NP_904743.1 34540264 2551661 482161..483207 1 NC_002950.2 hemagglutinin-like protein 483207 2551661 PG0443 Porphyromonas gingivalis W83 hemagglutinin-like protein NP_904743.1 482161 D 242619 CDS NP_904744.1 34540265 2551664 483396..485375 1 NC_002950.2 OPT family oligopeptide transporter 485375 2551664 PG0444 Porphyromonas gingivalis W83 OPT family oligopeptide transporter NP_904744.1 483396 D 242619 CDS NP_904745.1 34540266 2551666 485392..486609 1 NC_002950.2 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 486609 pepT 2551666 pepT Porphyromonas gingivalis W83 peptidase T NP_904745.1 485392 D 242619 CDS NP_904746.1 34540267 2551672 486739..487446 1 NC_002950.2 thiF protein 487446 thiF 2551672 thiF Porphyromonas gingivalis W83 thiF protein NP_904746.1 486739 D 242619 CDS NP_904747.2 161579532 2551677 487502..488236 1 NC_002950.2 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 488236 2551677 PG0447 Porphyromonas gingivalis W83 pantothenate kinase NP_904747.2 487502 D 242619 CDS NP_904748.1 34540269 2551682 488229..489533 1 NC_002950.2 hypothetical protein 489533 2551682 PG0448 Porphyromonas gingivalis W83 hypothetical protein NP_904748.1 488229 D 242619 CDS NP_904749.1 34540270 2551686 489545..490927 1 NC_002950.2 hypothetical protein 490927 2551686 PG0449 Porphyromonas gingivalis W83 hypothetical protein NP_904749.1 489545 D 242619 CDS NP_904750.1 34540271 2551694 490952..491662 1 NC_002950.2 hypothetical protein 491662 2551694 PG0450 Porphyromonas gingivalis W83 hypothetical protein NP_904750.1 490952 D 242619 CDS NP_904751.1 34540272 2551697 491659..492912 1 NC_002950.2 hypothetical protein 492912 2551697 PG0451 Porphyromonas gingivalis W83 hypothetical protein NP_904751.1 491659 D 242619 CDS NP_904752.1 34540273 2551700 493019..495166 1 NC_002950.2 hypothetical protein 495166 2551700 PG0452 Porphyromonas gingivalis W83 hypothetical protein NP_904752.1 493019 D 242619 CDS NP_904753.1 34540274 2551847 495456..496730 1 NC_002950.2 hypothetical protein 496730 2551847 PG0453 Porphyromonas gingivalis W83 hypothetical protein NP_904753.1 495456 D 242619 CDS NP_904754.1 34540275 2551788 497855..499894 1 NC_002950.2 phosphotransferase domain-containing protein 499894 2551788 PG0456 Porphyromonas gingivalis W83 phosphotransferase domain-containing protein NP_904754.1 497855 D 242619 CDS NP_904755.1 34540276 2551793 499875..500168 1 NC_002950.2 hypothetical protein 500168 2551793 PG0457 Porphyromonas gingivalis W83 hypothetical protein NP_904755.1 499875 D 242619 CDS NP_904756.1 34540277 2551725 complement(500615..501553) 1 NC_002950.2 ISPg5, transposase Orf2 501553 2551725 PG0458 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_904756.1 500615 R 242619 CDS NP_904757.1 34540278 2551807 complement(501607..501984) 1 NC_002950.2 ISPg5, transposase Orf1 501984 2551807 PG0459 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_904757.1 501607 R 242619 CDS NP_904758.1 34540279 2551820 502077..503162 1 NC_002950.2 ISPg1, transposase 503162 2551820 PG0460 Porphyromonas gingivalis W83 ISPg1, transposase NP_904758.1 502077 D 242619 CDS NP_904759.1 34540280 2551991 complement(503529..504836) 1 NC_002950.2 ISPg7, transposase 504836 2551991 PG0461 Porphyromonas gingivalis W83 ISPg7, transposase NP_904759.1 503529 R 242619 CDS NP_904760.1 34540281 2551811 complement(504966..506369) 1 NC_002950.2 transporter 506369 2551811 PG0462 Porphyromonas gingivalis W83 transporter NP_904760.1 504966 R 242619 CDS NP_904761.1 34540282 2551392 complement(506407..507696) 1 NC_002950.2 folylpolyglutamate synthase 507696 folC 2551392 folC Porphyromonas gingivalis W83 folylpolyglutamate synthase NP_904761.1 506407 R 242619 CDS NP_904762.1 34540283 2551835 complement(507693..508964) 1 NC_002950.2 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 508964 purA 2551835 purA Porphyromonas gingivalis W83 adenylosuccinate synthetase NP_904762.1 507693 R 242619 CDS NP_904763.1 34540284 2551442 complement(508993..509493) 1 NC_002950.2 ferric uptake transcriptional regulator 509493 fur 2551442 fur Porphyromonas gingivalis W83 ferric uptake transcriptional regulator NP_904763.1 508993 R 242619 CDS NP_904764.1 34540285 2551654 complement(509579..510334) 1 NC_002950.2 hypothetical protein 510334 2551654 PG0466 Porphyromonas gingivalis W83 hypothetical protein NP_904764.1 509579 R 242619 CDS NP_904765.1 34540286 2551842 complement(510464..511474) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01238; mannose-6-phosphate isomerase 511474 manA 2551842 manA Porphyromonas gingivalis W83 mannose-6-phosphate isomerase NP_904765.1 510464 R 242619 CDS NP_904766.1 34540287 2551858 complement(511497..511748) 1 NC_002950.2 hypothetical protein 511748 2551858 PG0469 Porphyromonas gingivalis W83 hypothetical protein NP_904766.1 511497 R 242619 CDS NP_904767.1 34540288 2551974 complement(511827..511973) 1 NC_002950.2 hypothetical protein 511973 2551974 PG0470 Porphyromonas gingivalis W83 hypothetical protein NP_904767.1 511827 R 242619 CDS NP_904768.1 34540289 2551432 512428..513492 1 NC_002950.2 hypothetical protein 513492 2551432 PG0471 Porphyromonas gingivalis W83 hypothetical protein NP_904768.1 512428 D 242619 CDS NP_904769.1 34540290 2551406 513479..514474 1 NC_002950.2 iron-sulfur cluster binding protein 514474 2551406 PG0472 Porphyromonas gingivalis W83 iron-sulfur cluster binding protein NP_904769.1 513479 D 242619 CDS NP_904770.1 34540291 2551896 complement(515101..516138) 1 NC_002950.2 similar to GB:L29636, SP:P38133, and PID:532251; identified by sequence similarity; putative; low-specificity L-threonine aldolase 516138 2551896 PG0474 Porphyromonas gingivalis W83 low-specificity L-threonine aldolase NP_904770.1 515101 R 242619 CDS NP_904771.1 34540292 2552298 complement(516178..517308) 1 NC_002950.2 oxygen-independent coproporphyrinogen III oxidase 517308 2552298 PG0475 Porphyromonas gingivalis W83 oxygen-independent coproporphyrinogen III oxidase NP_904771.1 516178 R 242619 CDS NP_904772.1 34540293 2551564 complement(517305..518852) 1 NC_002950.2 similar to SP:P34024, GB:X54618, GB:X60035, and PID:581304; identified by sequence similarity; putative; hypothetical protein 518852 yngK-2 2551564 yngK-2 Porphyromonas gingivalis W83 hypothetical protein NP_904772.1 517305 R 242619 CDS NP_904773.1 34540294 2551844 complement(518842..519687) 1 NC_002950.2 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 519687 panC 2551844 panC Porphyromonas gingivalis W83 pantoate--beta-alanine ligase NP_904773.1 518842 R 242619 CDS NP_904774.1 34540295 2552242 519826..520605 1 NC_002950.2 hypothetical protein 520605 2552242 PG0479 Porphyromonas gingivalis W83 hypothetical protein NP_904774.1 519826 D 242619 CDS NP_904775.1 34540296 2552244 complement(520696..521409) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01466; precorrin-2 C20-methyltransferase 521409 2552244 PG0480 Porphyromonas gingivalis W83 precorrin-2 C20-methyltransferase NP_904775.1 520696 R 242619 CDS NP_904776.1 34540297 2552252 complement(521522..522712) 1 NC_002950.2 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase 522712 kbl 2552252 kbl Porphyromonas gingivalis W83 2-amino-3-ketobutyrate CoA ligase NP_904776.1 521522 R 242619 CDS NP_904777.1 34540298 2552255 complement(522788..523219) 1 NC_002950.2 hypothetical protein 523219 2552255 PG0482 Porphyromonas gingivalis W83 hypothetical protein NP_904777.1 522788 R 242619 CDS NP_904778.1 34540299 2552257 complement(523326..523934) 1 NC_002950.2 kinase 523934 2552257 PG0483 Porphyromonas gingivalis W83 kinase NP_904778.1 523326 R 242619 CDS NP_904779.1 34540300 2552260 complement(523941..524948) 1 NC_002950.2 hypothetical protein 524948 2552260 PG0484 Porphyromonas gingivalis W83 hypothetical protein NP_904779.1 523941 R 242619 CDS NP_904780.1 34540301 2552268 complement(525076..525414) 1 NC_002950.2 preprotein translocase subunit YajC 525414 yajC 2552268 yajC Porphyromonas gingivalis W83 preprotein translocase subunit YajC NP_904780.1 525076 R 242619 CDS NP_904781.1 34540302 2552270 complement(525497..526024) 1 NC_002950.2 identified by match to PFAM protein family HMM PF02870; methylated-DNA--protein-cysteine S-methyltransferase 526024 ogt 2552270 ogt Porphyromonas gingivalis W83 methylated-DNA--protein-cysteine S-methyltransferase NP_904781.1 525497 R 242619 CDS NP_904782.1 34540303 2552276 complement(526366..527523) 1 NC_002950.2 ISPg4, transposase 527523 2552276 PG0487 Porphyromonas gingivalis W83 ISPg4, transposase NP_904782.1 526366 R 242619 CDS NP_904783.1 34540304 2552278 528309..529340 1 NC_002950.2 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 529340 ruvB 2552278 ruvB Porphyromonas gingivalis W83 Holliday junction DNA helicase RuvB NP_904783.1 528309 D 242619 CDS NP_904784.1 34540305 2552283 529387..530868 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; polysaccharide biosynthesis-like protein 530868 2552283 PG0489 Porphyromonas gingivalis W83 polysaccharide biosynthesis-like protein NP_904784.1 529387 D 242619 CDS NP_904785.1 34540306 2552286 530968..532308 1 NC_002950.2 similar to GB:X78678, SP:P50053, PID:1743262, PID:1743264, PID:1845162, and PID:558351; identified by sequence similarity; putative; hypothetical protein 532308 2552286 PG0490 Porphyromonas gingivalis W83 hypothetical protein NP_904785.1 530968 D 242619 CDS NP_904786.1 34540307 2552289 532324..534462 1 NC_002950.2 hypothetical protein 534462 2552289 PG0491 Porphyromonas gingivalis W83 hypothetical protein NP_904786.1 532324 D 242619 CDS NP_904787.1 34540308 2552290 complement(534498..534758) 1 NC_002950.2 hypothetical protein 534758 2552290 PG0492 Porphyromonas gingivalis W83 hypothetical protein NP_904787.1 534498 R 242619 CDS NP_904788.1 34540309 2552226 complement(534832..534990) 1 NC_002950.2 hypothetical protein 534990 2552226 PG0493 Porphyromonas gingivalis W83 hypothetical protein NP_904788.1 534832 R 242619 CDS NP_904789.1 34540310 2552302 complement(535184..535456) 1 NC_002950.2 hypothetical protein 535456 2552302 PG0494 Porphyromonas gingivalis W83 hypothetical protein NP_904789.1 535184 R 242619 CDS NP_904790.1 34540311 2552305 535587..536996 1 NC_002950.2 hypothetical protein 536996 2552305 PG0495 Porphyromonas gingivalis W83 hypothetical protein NP_904790.1 535587 D 242619 CDS NP_904791.1 34540312 2552301 537308..537400 1 NC_002950.2 hypothetical protein 537400 2552301 PG0496 Porphyromonas gingivalis W83 hypothetical protein NP_904791.1 537308 D 242619 CDS NP_904792.1 34540313 2552308 537397..538083 1 NC_002950.2 similar to GB:X70848, GB:J04759, GB:M63960, SP:P08129, SP:P36873, SP:P37140, PID:190281, PID:190516, PID:35451, PID:484316, PID:506772, and PID:531476; identified by sequence similarity; putative; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 538083 mtn 2552308 mtn Porphyromonas gingivalis W83 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase NP_904792.1 537397 D 242619 CDS NP_904793.1 34540314 2552279 538108..538587 1 NC_002950.2 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 538587 luxS 2552279 luxS Porphyromonas gingivalis W83 S-ribosylhomocysteinase NP_904793.1 538108 D 242619 CDS NP_904794.1 34540315 2552311 538849..539202 1 NC_002950.2 hypothetical protein 539202 2552311 PG0499 Porphyromonas gingivalis W83 hypothetical protein NP_904794.1 538849 D 242619 CDS NP_904795.1 34540316 2552316 539337..540467 1 NC_002950.2 similar to GB:X68203, SP:P16057, SP:P35916, PID:1150991, PID:297050, and PID:388522; identified by sequence similarity; putative; queuine tRNA-ribosyltransferase 540467 tgt 2552316 tgt Porphyromonas gingivalis W83 queuine tRNA-ribosyltransferase NP_904795.1 539337 D 242619 CDS NP_904796.1 34540317 2552326 540484..541566 1 NC_002950.2 similar to GB:L23320, SP:P35251, PID:296908, PID:307338, and PID:410218; identified by sequence similarity; putative; hypothetical protein 541566 2552326 PG0501 Porphyromonas gingivalis W83 hypothetical protein NP_904796.1 540484 D 242619 CDS NP_904797.1 34540318 2552299 541599..542060 1 NC_002950.2 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 542060 smpB 2552299 smpB Porphyromonas gingivalis W83 SsrA-binding protein NP_904797.1 541599 D 242619 CDS NP_904798.1 34540319 2552314 542100..544271 1 NC_002950.2 dipeptidyl aminopeptidase IV 544271 dpp 2552314 dpp Porphyromonas gingivalis W83 dipeptidyl aminopeptidase IV NP_904798.1 542100 D 242619 CDS NP_904799.1 34540320 2552284 544374..545222 1 NC_002950.2 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 545222 lipA 2552284 lipA Porphyromonas gingivalis W83 lipoyl synthase NP_904799.1 544374 D 242619 CDS NP_904800.1 34540321 2552231 545335..545457 1 NC_002950.2 hypothetical protein 545457 2552231 PG0505 Porphyromonas gingivalis W83 hypothetical protein NP_904800.1 545335 D 242619 CDS NP_904801.1 34540322 2552233 545475..547685 1 NC_002950.2 similar to GB:M28829, and PID:551976; identified by sequence similarity; putative; arginine-specific cysteine proteinase 547685 prtRII 2552233 prtRII Porphyromonas gingivalis W83 arginine-specific cysteine proteinase NP_904801.1 545475 D 242619 CDS NP_904802.1 34540323 2552238 548056..548250 1 NC_002950.2 hypothetical protein 548250 2552238 PG0507 Porphyromonas gingivalis W83 hypothetical protein NP_904802.1 548056 D 242619 CDS NP_904803.1 34540324 2552324 complement(548226..548828) 1 NC_002950.2 HAD family hydrolase 548828 2552324 PG0508 Porphyromonas gingivalis W83 HAD family hydrolase NP_904803.1 548226 R 242619 CDS NP_904804.1 34540325 2552304 complement(548818..549678) 1 NC_002950.2 catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase 549678 2552304 PG0509 Porphyromonas gingivalis W83 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase NP_904804.1 548818 R 242619 CDS NP_904805.1 34540326 2552296 complement(549695..550150) 1 NC_002950.2 identified by match to PFAM protein family HMM PF02130; hypothetical protein 550150 2552296 PG0510 Porphyromonas gingivalis W83 hypothetical protein NP_904805.1 549695 R 242619 CDS NP_904806.1 34540327 2552325 complement(550186..551418) 1 NC_002950.2 similar to SP:P35157, and SP:P35158; identified by sequence similarity; putative; spore maturation protein A/spore maturation protein B 551418 2552325 PG0511 Porphyromonas gingivalis W83 spore maturation protein A/spore maturation protein B NP_904806.1 550186 R 242619 CDS NP_904807.1 34540328 2552249 complement(551438..552004) 1 NC_002950.2 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 552004 gmk 2552249 gmk Porphyromonas gingivalis W83 guanylate kinase NP_904807.1 551438 R 242619 CDS NP_904808.1 34540329 2552237 complement(552037..552927) 1 NC_002950.2 hypothetical protein 552927 2552237 PG0513 Porphyromonas gingivalis W83 hypothetical protein NP_904808.1 552037 R 242619 CDS NP_904809.2 161579531 2552320 complement(553019..556360) 1 NC_002950.2 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 556360 secA 2552320 secA Porphyromonas gingivalis W83 preprotein translocase subunit SecA NP_904809.2 553019 R 242619 CDS NP_904810.1 34540331 2552300 complement(556453..558048) 1 NC_002950.2 hypothetical protein 558048 2552300 PG0515 Porphyromonas gingivalis W83 hypothetical protein NP_904810.1 556453 R 242619 CDS NP_904811.1 34540332 2551479 complement(558027..559274) 1 NC_002950.2 hypothetical protein 559274 2551479 PG0516 Porphyromonas gingivalis W83 hypothetical protein NP_904811.1 558027 R 242619 CDS NP_904812.1 34540333 2551487 complement(559305..562187) 1 NC_002950.2 hypothetical protein 562187 2551487 PG0517 Porphyromonas gingivalis W83 hypothetical protein NP_904812.1 559305 R 242619 CDS NP_904813.1 34540334 2551478 complement(562304..563029) 1 NC_002950.2 hypothetical protein 563029 2551478 PG0518 Porphyromonas gingivalis W83 hypothetical protein NP_904813.1 562304 R 242619 CDS NP_904814.1 34540335 2551473 563029..563139 1 NC_002950.2 hypothetical protein 563139 2551473 PG0519 Porphyromonas gingivalis W83 hypothetical protein NP_904814.1 563029 D 242619 CDS NP_904815.1 34540336 2551465 complement(563708..565345) 1 NC_002950.2 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL 565345 groEL 2551465 groEL Porphyromonas gingivalis W83 molecular chaperone GroEL NP_904815.1 563708 R 242619 CDS NP_904816.1 34540337 2551481 complement(565598..565867) 1 NC_002950.2 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 565867 groES 2551481 groES Porphyromonas gingivalis W83 co-chaperonin GroES NP_904816.1 565598 R 242619 CDS NP_904817.1 34540338 2551438 complement(566083..566991) 1 NC_002950.2 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 566991 miaA 2551438 miaA Porphyromonas gingivalis W83 tRNA delta(2)-isopentenylpyrophosphate transferase NP_904817.1 566083 R 242619 CDS NP_904818.1 34540339 2551469 complement(566988..568484) 1 NC_002950.2 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 568484 guaB 2551469 guaB Porphyromonas gingivalis W83 inosine 5-monophosphate dehydrogenase NP_904818.1 566988 R 242619 CDS NP_904819.1 34540340 2552353 568739..569023 1 NC_002950.2 hypothetical protein 569023 2552353 PG0524 Porphyromonas gingivalis W83 hypothetical protein NP_904819.1 568739 D 242619 CDS NP_904820.1 34540341 2552352 569139..570758 1 NC_002950.2 CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 570758 pyrG 2552352 pyrG Porphyromonas gingivalis W83 CTP synthetase NP_904820.1 569139 D 242619 CDS NP_904821.1 34540342 2552356 570886..572769 1 NC_002950.2 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 572769 2552356 PG0526 Porphyromonas gingivalis W83 putative inner membrane protein translocase component YidC NP_904821.1 570886 D 242619 CDS NP_904822.1 34540343 2551691 572860..574743 1 NC_002950.2 similar to GB:J05068, SP:P20061, and PID:307479; identified by sequence similarity; putative; amidophosphoribosyltransferase 574743 2551691 PG0528 Porphyromonas gingivalis W83 amidophosphoribosyltransferase NP_904822.1 572860 D 242619 CDS NP_904823.1 34540344 2552389 574777..575850 1 NC_002950.2 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 575850 carA 2552389 carA Porphyromonas gingivalis W83 carbamoyl phosphate synthase small subunit NP_904823.1 574777 D 242619 CDS NP_904824.1 34540345 2552392 575869..579096 1 NC_002950.2 similar to GB:M34462, GB:M35670, GB:M36805, GB:X65787, GB:Y00809, GB:Z26248, SP:P13727, PID:182080, PID:187415, PID:306839, PID:31137, PID:312045, PID:34476, and PID:400414; identified by sequence similarity; putative; carbamoyl-phosphate synthase large subunit 579096 carB 2552392 carB Porphyromonas gingivalis W83 carbamoyl-phosphate synthase large subunit NP_904824.1 575869 D 242619 CDS NP_904825.1 34540346 2552377 complement(579286..581229) 1 NC_002950.2 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 581229 nadE 2552377 nadE Porphyromonas gingivalis W83 NAD synthetase NP_904825.1 579286 R 242619 CDS NP_904826.1 34540347 2552348 complement(581339..582238) 1 NC_002950.2 hypothetical protein 582238 2552348 PG0532 Porphyromonas gingivalis W83 hypothetical protein NP_904826.1 581339 R 242619 CDS NP_904827.1 34540348 2552359 583382..585865 1 NC_002950.2 hypothetical protein 585865 2552359 PG0534 Porphyromonas gingivalis W83 hypothetical protein NP_904827.1 583382 D 242619 CDS NP_904828.1 34540349 2552362 complement(586046..586666) 1 NC_002950.2 similar to GB:M24141, SP:P14924, and PID:155614; identified by sequence similarity; putative; hypothetical protein 586666 2552362 PG0535 Porphyromonas gingivalis W83 hypothetical protein NP_904828.1 586046 R 242619 CDS NP_904829.1 34540350 2552364 586680..586985 1 NC_002950.2 hypothetical protein 586985 2552364 PG0536 Porphyromonas gingivalis W83 hypothetical protein NP_904829.1 586680 D 242619 CDS NP_904830.1 34540351 2552341 586994..588454 1 NC_002950.2 aminoacyl-histidine dipeptidase 588454 pepD-2 2552341 pepD-2 Porphyromonas gingivalis W83 aminoacyl-histidine dipeptidase NP_904830.1 586994 D 242619 CDS NP_904831.1 34540352 2552343 589282..590670 1 NC_002950.2 previously submitted to Genbank by Ross, et al as immunoreactive 52 kDa antigen PG41; outer membrane efflux protein 590670 2552343 PG0538 Porphyromonas gingivalis W83 outer membrane efflux protein NP_904831.1 589282 D 242619 CDS NP_904832.1 34540353 2552345 590714..591766 1 NC_002950.2 RND family efflux transporter MFP subunit 591766 2552345 PG0539 Porphyromonas gingivalis W83 RND family efflux transporter MFP subunit NP_904832.1 590714 D 242619 CDS NP_904833.1 34540354 2552336 591763..594912 1 NC_002950.2 AcrB/AcrD/AcrF family protein 594912 2552336 PG0540 Porphyromonas gingivalis W83 AcrB/AcrD/AcrF family protein NP_904833.1 591763 D 242619 CDS NP_904834.1 34540355 2552339 594897..595196 1 NC_002950.2 hypothetical protein 595196 2552339 PG0541 Porphyromonas gingivalis W83 hypothetical protein NP_904834.1 594897 D 242619 CDS NP_904835.1 34540356 2552381 complement(595467..595772) 1 NC_002950.2 hypothetical protein 595772 2552381 PG0542 Porphyromonas gingivalis W83 hypothetical protein NP_904835.1 595467 R 242619 CDS NP_904836.1 34540357 2552387 595797..596000 1 NC_002950.2 identified by match to PFAM protein family HMM PF01381; transcriptional regulator 596000 2552387 PG0543 Porphyromonas gingivalis W83 transcriptional regulator NP_904836.1 595797 D 242619 CDS NP_904837.1 34540358 2552386 596192..598138 1 NC_002950.2 type I restriction-modification system, M subunit 598138 2552386 PG0544 Porphyromonas gingivalis W83 type I restriction-modification system, M subunit NP_904837.1 596192 D 242619 CDS NP_904838.1 34540359 2552328 598183..600288 1 NC_002950.2 hypothetical protein 600288 2552328 PG0545 Porphyromonas gingivalis W83 hypothetical protein NP_904838.1 598183 D 242619 CDS NP_904839.1 34540360 2552331 complement(600269..600481) 1 NC_002950.2 hypothetical protein 600481 2552331 PG0546 Porphyromonas gingivalis W83 hypothetical protein NP_904839.1 600269 R 242619 CDS NP_904840.1 34540361 2552332 600853..602049 1 NC_002950.2 hypothetical protein 602049 2552332 PG0547 Porphyromonas gingivalis W83 hypothetical protein NP_904840.1 600853 D 242619 CDS NP_904841.1 34540362 2552335 602238..605819 1 NC_002950.2 pyruvate ferredoxin/flavodoxin oxidoreductase 605819 2552335 PG0548 Porphyromonas gingivalis W83 pyruvate ferredoxin/flavodoxin oxidoreductase NP_904841.1 602238 D 242619 CDS NP_904842.1 34540363 2552371 complement(606077..607162) 1 NC_002950.2 ISPg1, transposase 607162 2552371 PG0549 Porphyromonas gingivalis W83 ISPg1, transposase NP_904842.1 606077 R 242619 CDS NP_904843.1 34540364 2552375 complement(608457..611279) 1 NC_002950.2 similar to GB:M63420, GB:J03261, SP:P15018, PID:178415, PID:187141, PID:34362, and PID:575489; identified by sequence similarity; putative; extracellular protease 611279 2552375 PG0553 Porphyromonas gingivalis W83 extracellular protease NP_904843.1 608457 R 242619 CDS NP_904844.1 34540365 2551382 611605..611721 1 NC_002950.2 hypothetical protein 611721 2551382 PG0554 Porphyromonas gingivalis W83 hypothetical protein NP_904844.1 611605 D 242619 CDS NP_904845.1 34540366 2551420 complement(611806..612324) 1 NC_002950.2 histone-like family DNA-binding protein 612324 2551420 PG0555 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_904845.1 611806 R 242619 CDS NP_904846.1 34540367 2551433 613418..614320 1 NC_002950.2 hypothetical protein 614320 2551433 PG0556 Porphyromonas gingivalis W83 hypothetical protein NP_904846.1 613418 D 242619 CDS NP_904847.1 34540368 2551480 614375..615067 1 NC_002950.2 hypothetical protein 615067 2551480 PG0557 Porphyromonas gingivalis W83 hypothetical protein NP_904847.1 614375 D 242619 CDS NP_904848.1 34540369 2551484 complement(615600..616421) 1 NC_002950.2 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 616421 2551484 PG0558 Porphyromonas gingivalis W83 purine nucleoside phosphorylase NP_904848.1 615600 R 242619 CDS NP_904849.1 34540370 2551462 complement(616441..617586) 1 NC_002950.2 chlorohydrolase 617586 2551462 PG0559 Porphyromonas gingivalis W83 chlorohydrolase NP_904849.1 616441 R 242619 CDS NP_904850.1 34540371 2551373 617563..617808 1 NC_002950.2 hypothetical protein 617808 2551373 PG0560 Porphyromonas gingivalis W83 hypothetical protein NP_904850.1 617563 D 242619 CDS NP_904851.1 34540372 2551421 complement(617790..619145) 1 NC_002950.2 similar to GB:M96364, PID:1033197, PID:144480, and SP:Q59335; identified by sequence similarity; putative; M20/M25/M40 family peptidase 619145 2551421 PG0561 Porphyromonas gingivalis W83 M20/M25/M40 family peptidase NP_904851.1 617790 R 242619 CDS NP_904852.1 34540373 2551452 619362..621038 1 NC_002950.2 similar to GB:J04046, GB:X52606, GB:X52607, GB:X52608, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M19311, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M27319, GB:U11886, GB:U12022, GB:U16851, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, and PID:825635; identified by sequence similarity; putative; hypothetical protein 621038 2551452 PG0562 Porphyromonas gingivalis W83 hypothetical protein NP_904852.1 619362 D 242619 CDS NP_904853.1 34540374 2552417 complement(621025..621528) 1 NC_002950.2 hypothetical protein 621528 2552417 PG0563 Porphyromonas gingivalis W83 hypothetical protein NP_904853.1 621025 R 242619 CDS NP_904854.1 34540375 2552415 complement(621506..621700) 1 NC_002950.2 hypothetical protein 621700 2552415 PG0564 Porphyromonas gingivalis W83 hypothetical protein NP_904854.1 621506 R 242619 CDS NP_904855.1 34540376 2552478 complement(621861..622733) 1 NC_002950.2 hypothetical protein 622733 2552478 PG0565 Porphyromonas gingivalis W83 hypothetical protein NP_904855.1 621861 R 242619 CDS NP_904856.1 34540377 2552482 complement(623025..623531) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00216; histone-like family DNA-binding protein 623531 2552482 PG0566 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_904856.1 623025 R 242619 CDS NP_904857.1 34540378 2552437 complement(624089..624655) 1 NC_002950.2 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 624655 efp-1 2552437 efp-1 Porphyromonas gingivalis W83 elongation factor P NP_904857.1 624089 R 242619 CDS NP_904858.1 34540379 2552435 complement(624787..626313) 1 NC_002950.2 hypothetical protein 626313 2552435 PG0569 Porphyromonas gingivalis W83 hypothetical protein NP_904858.1 624787 R 242619 CDS NP_904859.1 34540380 2552421 626539..627552 1 NC_002950.2 similar to GB:M87049, SP:P06983, GB:X04242, GB:X12614, PID:148204, PID:41186, PID:41664, PID:41666, GB:U00096, PID:2367293, GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; putative; aspartate-semialdehyde dehydrogenase 627552 asd 2552421 asd Porphyromonas gingivalis W83 aspartate-semialdehyde dehydrogenase NP_904859.1 626539 D 242619 CDS NP_904860.1 34540381 2552414 complement(627524..627661) 1 NC_002950.2 hypothetical protein 627661 2552414 PG0572 Porphyromonas gingivalis W83 hypothetical protein NP_904860.1 627524 R 242619 CDS NP_904861.1 34540382 2552422 628223..629158 1 NC_002950.2 S-adenosyl-methyltransferase MraW 629158 mraW 2552422 mraW Porphyromonas gingivalis W83 S-adenosyl-methyltransferase MraW NP_904861.1 628223 D 242619 CDS NP_904862.1 34540383 2552424 629158..629631 1 NC_002950.2 hypothetical protein 629631 2552424 PG0574 Porphyromonas gingivalis W83 hypothetical protein NP_904862.1 629158 D 242619 CDS NP_904863.1 34540384 2552419 629641..631842 1 NC_002950.2 penicillin-binding protein 2 631842 2552419 PG0575 Porphyromonas gingivalis W83 penicillin-binding protein 2 NP_904863.1 629641 D 242619 CDS NP_904864.1 34540385 2552459 631859..633322 1 NC_002950.2 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 633322 murE 2552459 murE Porphyromonas gingivalis W83 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase NP_904864.1 631859 D 242619 CDS NP_904865.1 34540386 2552457 633337..634596 1 NC_002950.2 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 634596 mraY 2552457 mraY Porphyromonas gingivalis W83 phospho-N-acetylmuramoyl-pentapeptide- transferase NP_904865.1 633337 D 242619 CDS NP_904866.1 34540387 2552460 634620..635972 1 NC_002950.2 UDP-N-acetylmuramoylalanine--D-glutamate ligase 635972 murD 2552460 murD Porphyromonas gingivalis W83 UDP-N-acetylmuramoylalanine--D-glutamate ligase NP_904866.1 634620 D 242619 CDS NP_904867.1 34540388 2552454 635984..637240 1 NC_002950.2 similar to GB:M27504, GB:Z15111, GB:S56813, GB:X68060, GB:Z15115, GB:D17023, SP:Q02880, PID:1354507, PID:2088635, PID:288565, PID:288567, PID:339810, PID:37231, and PID:38325; identified by sequence similarity; putative; cell division protein FtsW 637240 2552454 PG0579 Porphyromonas gingivalis W83 cell division protein FtsW NP_904867.1 635984 D 242619 CDS NP_904868.1 34540389 2552407 637237..638376 1 NC_002950.2 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 638376 murG 2552407 murG Porphyromonas gingivalis W83 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase NP_904868.1 637237 D 242619 CDS NP_904869.1 34540390 2552423 638376..639746 1 NC_002950.2 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 639746 murC 2552423 murC Porphyromonas gingivalis W83 UDP-N-acetylmuramate--L-alanine ligase NP_904869.1 638376 D 242619 CDS NP_904870.1 34540391 2552404 639740..640516 1 NC_002950.2 similar to GB:M60722, SP:P23256, PID:146693, GB:U00096, PID:1742676, PID:1742684, PID:1742716, and PID:1787909; identified by sequence similarity; putative; cell division protein FtsQ 640516 2552404 PG0582 Porphyromonas gingivalis W83 cell division protein FtsQ NP_904870.1 639740 D 242619 CDS NP_904871.1 34540392 2552410 640565..642004 1 NC_002950.2 similar to GB:M60722, SP:P23256, PID:146693, GB:U00096, PID:1742676, PID:1742684, PID:1742716, and PID:1787909; identified by sequence similarity; putative; cell division protein FtsA 642004 ftsA 2552410 ftsA Porphyromonas gingivalis W83 cell division protein FtsA NP_904871.1 640565 D 242619 CDS NP_904872.1 34540393 2552441 642007..643380 1 NC_002950.2 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 643380 ftsz 2552441 ftsz Porphyromonas gingivalis W83 cell division protein FtsZ NP_904872.1 642007 D 242619 CDS NP_904873.1 34540394 2552463 643412..643861 1 NC_002950.2 similar to GB:M31903, SP:P16218, and PID:144774; identified by sequence similarity; putative; hypothetical protein 643861 2552463 PG0585 Porphyromonas gingivalis W83 hypothetical protein NP_904873.1 643412 D 242619 CDS NP_904874.1 34540395 2552427 complement(644702..645334) 1 NC_002950.2 similar to GB:J04974, GB:U32169, GB:L18987, SP:P13942, PID:1000745, PID:1000747, PID:1724042, and PID:180715; identified by sequence similarity; putative; yadS protein 645334 yadS 2552427 yadS Porphyromonas gingivalis W83 yadS protein NP_904874.1 644702 R 242619 CDS NP_904875.1 34540396 2552406 complement(645386..646207) 1 NC_002950.2 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 646207 panB 2552406 panB Porphyromonas gingivalis W83 3-methyl-2-oxobutanoate hydroxymethyltransferase NP_904875.1 645386 R 242619 CDS NP_904876.1 34540397 2552440 complement(646278..647798) 1 NC_002950.2 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 647798 guaA 2552440 guaA Porphyromonas gingivalis W83 GMP synthase NP_904876.1 646278 R 242619 CDS NP_904877.1 34540398 2552431 648175..648570 1 NC_002950.2 ISPg5, transposase Orf1 648570 2552431 PG0590 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_904877.1 648175 D 242619 CDS NP_904878.1 34540399 2552428 648624..649562 1 NC_002950.2 ISPg5, transposase Orf2 649562 2552428 PG0591 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_904878.1 648624 D 242619 CDS NP_904879.1 34540400 2552481 650028..650285 1 NC_002950.2 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 650285 rpmE2 2552481 rpmE2 Porphyromonas gingivalis W83 50S ribosomal protein L31 NP_904879.1 650028 D 242619 CDS NP_904880.1 34540401 2552451 650502..651998 1 NC_002950.2 similar to GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, PID:180195, GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, PID:180195, GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, PID:180195, GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, and PID:180195; identified by sequence similarity; putative; htrA protein 651998 htrA 2552451 htrA Porphyromonas gingivalis W83 htrA protein NP_904880.1 650502 D 242619 CDS NP_904881.1 34540402 2552433 652188..653051 1 NC_002950.2 similar to GB:Z19055, SP:P42394, PID:396660, GB:Z19055, SP:P42394, and PID:396660; identified by sequence similarity; putative; RNA polymerase sigma-70 factor 653051 rpoD 2552433 rpoD Porphyromonas gingivalis W83 RNA polymerase sigma-70 factor NP_904881.1 652188 D 242619 CDS NP_904882.1 34540403 2552425 653148..653501 1 NC_002950.2 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 653501 rpsF 2552425 rpsF Porphyromonas gingivalis W83 30S ribosomal protein S6 NP_904882.1 653148 D 242619 CDS NP_904883.1 34540404 2552432 653505..653777 1 NC_002950.2 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 653777 rpsR 2552432 rpsR Porphyromonas gingivalis W83 30S ribosomal protein S18 NP_904883.1 653505 D 242619 CDS NP_904884.1 34540405 2552420 653802..654341 1 NC_002950.2 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 654341 rplI 2552420 rplI Porphyromonas gingivalis W83 50S ribosomal protein L9 NP_904884.1 653802 D 242619 CDS NP_904885.1 34540406 2552475 654617..656572 1 NC_002950.2 hypothetical protein 656572 2552475 PG0598 Porphyromonas gingivalis W83 hypothetical protein NP_904885.1 654617 D 242619 CDS NP_904886.1 34540407 2552480 656575..657792 1 NC_002950.2 similar to GB:M89481, SP:P37409, and PID:153891; identified by sequence similarity; putative; 3,4-dihydroxy-2-butanone 4-phosphate synthase 657792 ribBA 2552480 ribBA Porphyromonas gingivalis W83 3,4-dihydroxy-2-butanone 4-phosphate synthase NP_904886.1 656575 D 242619 CDS NP_904887.1 34540408 2552469 658640..659680 1 NC_002950.2 hypothetical protein 659680 2552469 PG0602 Porphyromonas gingivalis W83 hypothetical protein NP_904887.1 658640 D 242619 CDS NP_904888.1 34540409 2552444 659710..660405 1 NC_002950.2 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 660405 cmk 2552444 cmk Porphyromonas gingivalis W83 cytidylate kinase NP_904888.1 659710 D 242619 CDS NP_904889.1 34540410 2552442 660402..661271 1 NC_002950.2 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 661271 ispH 2552442 ispH Porphyromonas gingivalis W83 4-hydroxy-3-methylbut-2-enyl diphosphate reductase NP_904889.1 660402 D 242619 CDS NP_904890.1 34540411 2552456 complement(661255..662496) 1 NC_002950.2 hypothetical protein 662496 2552456 PG0605 Porphyromonas gingivalis W83 hypothetical protein NP_904890.1 661255 R 242619 CDS NP_904891.1 34540412 2552447 complement(662541..662648) 1 NC_002950.2 hypothetical protein 662648 2552447 PG0606 Porphyromonas gingivalis W83 hypothetical protein NP_904891.1 662541 R 242619 CDS NP_904892.1 34540413 2552465 662692..663054 1 NC_002950.2 hypothetical protein 663054 2552465 PG0607 Porphyromonas gingivalis W83 hypothetical protein NP_904892.1 662692 D 242619 CDS NP_904893.1 34540414 2552470 663085..663219 1 NC_002950.2 hypothetical protein 663219 2552470 PG0608 Porphyromonas gingivalis W83 hypothetical protein NP_904893.1 663085 D 242619 CDS NP_904894.1 34540415 2552471 663323..663415 1 NC_002950.2 hypothetical protein 663415 2552471 PG0609 Porphyromonas gingivalis W83 hypothetical protein NP_904894.1 663323 D 242619 CDS NP_904895.1 34540416 2551372 complement(663694..664113) 1 NC_002950.2 hypothetical protein 664113 2551372 PG0610 Porphyromonas gingivalis W83 hypothetical protein NP_904895.1 663694 R 242619 CDS NP_904896.1 34540417 2552526 664152..665102 1 NC_002950.2 putative lipoprotein 665102 2552526 PG0611 Porphyromonas gingivalis W83 putative lipoprotein NP_904896.1 664152 D 242619 CDS NP_904897.1 34540418 2552486 665099..665302 1 NC_002950.2 hypothetical protein 665302 2552486 PG0612 Porphyromonas gingivalis W83 hypothetical protein NP_904897.1 665099 D 242619 CDS NP_904898.1 34540419 2552493 665326..666015 1 NC_002950.2 hypothetical protein 666015 2552493 PG0613 Porphyromonas gingivalis W83 hypothetical protein NP_904898.1 665326 D 242619 CDS NP_904899.1 34540420 2552504 665987..666967 1 NC_002950.2 hypothetical protein 666967 2552504 PG0614 Porphyromonas gingivalis W83 hypothetical protein NP_904899.1 665987 D 242619 CDS NP_904900.1 34540421 2552506 667173..668972 1 NC_002950.2 similar to SP:Q05489, PID:49206, PID:640960, and PID:1247764; identified by sequence similarity; putative; GTP-binding protein TypA 668972 typA 2552506 typA Porphyromonas gingivalis W83 GTP-binding protein TypA NP_904900.1 667173 D 242619 CDS NP_904901.1 34540422 2552508 669075..670109 1 NC_002950.2 thioredoxin 670109 2552508 PG0616 Porphyromonas gingivalis W83 thioredoxin NP_904901.1 669075 D 242619 CDS NP_904902.1 34540423 2552510 670199..670498 1 NC_002950.2 hypothetical protein 670498 2552510 PG0617 Porphyromonas gingivalis W83 hypothetical protein NP_904902.1 670199 D 242619 CDS NP_904903.1 34540424 2552494 670512..671078 1 NC_002950.2 identified by match to PFAM protein family HMM PF00578; alkyl hydroperoxide reductase 671078 2552494 PG0618 Porphyromonas gingivalis W83 alkyl hydroperoxide reductase NP_904903.1 670512 D 242619 CDS NP_904904.1 34540425 2552498 671244..672791 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01698; alkyl hydroperoxide reductase 672791 2552498 PG0619 Porphyromonas gingivalis W83 alkyl hydroperoxide reductase NP_904904.1 671244 D 242619 CDS NP_904905.1 34540426 2552515 673103..675535 1 NC_002950.2 ATP-dependent protease La 675535 lon 2552515 lon Porphyromonas gingivalis W83 ATP-dependent protease La NP_904905.1 673103 D 242619 CDS NP_904906.1 34540427 2552500 675532..676080 1 NC_002950.2 hypothetical protein 676080 2552500 PG0621 Porphyromonas gingivalis W83 hypothetical protein NP_904906.1 675532 D 242619 CDS NP_904907.1 34540428 2552491 676077..677369 1 NC_002950.2 hypothetical protein 677369 2552491 PG0622 Porphyromonas gingivalis W83 hypothetical protein NP_904907.1 676077 D 242619 CDS NP_904908.1 34540429 2552517 677401..678156 1 NC_002950.2 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 678156 tpiA 2552517 tpiA Porphyromonas gingivalis W83 triosephosphate isomerase NP_904908.1 677401 D 242619 CDS NP_904909.1 34540430 2552501 678218..678724 1 NC_002950.2 identified by match to PFAM protein family HMM PF05036; hypothetical protein 678724 2552501 PG0624 Porphyromonas gingivalis W83 hypothetical protein NP_904909.1 678218 D 242619 CDS NP_904910.1 34540431 2552519 678728..679309 1 NC_002950.2 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 679309 folE 2552519 folE Porphyromonas gingivalis W83 GTP cyclohydrolase I NP_904910.1 678728 D 242619 CDS NP_904911.1 34540432 2552520 679540..680406 1 NC_002950.2 hypothetical protein 680406 2552520 PG0626 Porphyromonas gingivalis W83 hypothetical protein NP_904911.1 679540 D 242619 CDS NP_904912.1 34540433 2552523 complement(681232..681525) 1 NC_002950.2 similar to GB:D10483, SP:P05636, GB:X04711, PID:216475, PID:40918, GB:U00096, and PID:1786235; identified by sequence similarity; putative; RNA-binding protein 681525 2552523 PG0627 Porphyromonas gingivalis W83 RNA-binding protein NP_904912.1 681232 R 242619 CDS NP_904913.1 34540434 2552521 complement(681774..682529) 1 NC_002950.2 similar to GB:M63007, SP:P27345, and PID:142306; identified by sequence similarity; putative; ABC transporter ATP-binding protein 682529 2552521 PG0628 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_904913.1 681774 R 242619 CDS NP_904914.1 34540435 2552505 complement(682588..683454) 1 NC_002950.2 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 683454 ppnK 2552505 ppnK Porphyromonas gingivalis W83 inorganic polyphosphate/ATP-NAD kinase NP_904914.1 682588 R 242619 CDS NP_904915.1 34540436 2552514 683532..684248 1 NC_002950.2 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 684248 pdxJ 2552514 pdxJ Porphyromonas gingivalis W83 pyridoxine 5'-phosphate synthase NP_904915.1 683532 D 242619 CDS NP_904916.1 34540437 2552532 684406..685020 1 NC_002950.2 MotA/TolQ/ExbB proton channel family protein 685020 2552532 PG0631 Porphyromonas gingivalis W83 MotA/TolQ/ExbB proton channel family protein NP_904916.1 684406 D 242619 CDS NP_904917.1 34540438 2552533 685017..685436 1 NC_002950.2 identified by match to PFAM protein family HMM PF02472; biopolymer transport protein ExbD 685436 2552533 PG0632 Porphyromonas gingivalis W83 biopolymer transport protein ExbD NP_904917.1 685017 D 242619 CDS NP_904918.1 34540439 2552487 685441..686268 1 NC_002950.2 hypothetical protein 686268 2552487 PG0633 Porphyromonas gingivalis W83 hypothetical protein NP_904918.1 685441 D 242619 CDS NP_904919.1 34540440 2552527 686283..686828 1 NC_002950.2 ThiJ/PfpI family protein 686828 2552527 PG0634 Porphyromonas gingivalis W83 ThiJ/PfpI family protein NP_904919.1 686283 D 242619 CDS NP_904920.1 34540441 2552528 complement(686928..687863) 1 NC_002950.2 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 687863 prmA 2552528 prmA Porphyromonas gingivalis W83 50S ribosomal protein L11 methyltransferase NP_904920.1 686928 R 242619 CDS NP_904921.1 34540442 2551525 complement(687797..689161) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein 689161 2551525 PG0636 Porphyromonas gingivalis W83 MATE efflux family protein NP_904921.1 687797 R 242619 CDS NP_904922.1 34540443 2552561 complement(689154..690194) 1 NC_002950.2 similar to SP:P14071; identified by sequence similarity; putative; thiamine monophosphate kinase 690194 thiL 2552561 thiL Porphyromonas gingivalis W83 thiamine monophosphate kinase NP_904922.1 689154 R 242619 CDS NP_904923.1 34540444 2552577 complement(690200..691273) 1 NC_002950.2 similar to GB:X68277, SP:P28562, and PID:29981; identified by sequence similarity; putative; tetraacyldisaccharide 4'-kinase 691273 lpxK 2552577 lpxK Porphyromonas gingivalis W83 tetraacyldisaccharide 4'-kinase NP_904923.1 690200 R 242619 CDS NP_904924.1 34540445 2552578 complement(691303..693090) 1 NC_002950.2 similar to GB:X07743, SP:P08567, and PID:35518; identified by sequence similarity; putative; signal peptide peptidase SppA, 67K type 693090 sppA 2552578 sppA Porphyromonas gingivalis W83 signal peptide peptidase SppA, 67K type NP_904924.1 691303 R 242619 CDS NP_904925.1 34540446 2552541 complement(696973..698049) 1 NC_002950.2 similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; hypothetical protein 698049 2552541 PG0645 Porphyromonas gingivalis W83 hypothetical protein NP_904925.1 696973 R 242619 CDS NP_904926.1 34540447 2552539 complement(698160..699161) 1 NC_002950.2 similar to GB:L23560, SP:P01743, SP:P23083, PID:499592, PID:509804, PID:553397, PID:553411, PID:553471, PID:560840, PID:567116, PID:619770, PID:619775, and PID:860978; identified by sequence similarity; putative; iron ABC transporter ATP-binding protein 699161 2552539 PG0646 Porphyromonas gingivalis W83 iron ABC transporter ATP-binding protein NP_904926.1 698160 R 242619 CDS NP_904927.1 34540448 2552550 complement(699169..700203) 1 NC_002950.2 similar to SP:P06975, GB:X02589, PID:41515, GB:U00096, PID:1651290, PID:1651295, and PID:1786899; identified by sequence similarity; putative; iron ABC transporter permease 700203 2552550 PG0647 Porphyromonas gingivalis W83 iron ABC transporter permease NP_904927.1 699169 R 242619 CDS NP_904928.1 34540449 2552557 complement(700200..701375) 1 NC_002950.2 iron ABC transporter substrate-binding protein 701375 2552557 PG0648 Porphyromonas gingivalis W83 iron ABC transporter substrate-binding protein NP_904928.1 700200 R 242619 CDS NP_904929.1 34540450 2552546 701960..702544 1 NC_002950.2 identified by match to PFAM protein family HMM PF03692; hypothetical protein 702544 2552546 PG0649 Porphyromonas gingivalis W83 hypothetical protein NP_904929.1 701960 D 242619 CDS NP_904930.1 34540451 2552549 complement(702671..703054) 1 NC_002950.2 hypothetical protein 703054 2552549 PG0650 Porphyromonas gingivalis W83 hypothetical protein NP_904930.1 702671 R 242619 CDS NP_904931.1 34540452 2552571 complement(703161..703712) 1 NC_002950.2 similar to SP:P21862, GB:X54049, PID:43108, PID:882566, GB:U00096, and PID:1789414; identified by sequence similarity; putative; HDIG domain-containing protein 703712 2552571 PG0651 Porphyromonas gingivalis W83 HDIG domain-containing protein NP_904931.1 703161 R 242619 CDS NP_904932.1 34540453 2552563 complement(703989..704291) 1 NC_002950.2 similar to GP:4582460, and GP:19714389; identified by sequence similarity; putative; hypothetical protein 704291 2552563 PG0652 Porphyromonas gingivalis W83 hypothetical protein NP_904932.1 703989 R 242619 CDS NP_904933.1 34540454 2552569 complement(704303..705544) 1 NC_002950.2 phosphoserine phosphatase 705544 serB 2552569 serB Porphyromonas gingivalis W83 phosphoserine phosphatase NP_904933.1 704303 R 242619 CDS NP_904934.1 34540455 2552551 complement(705603..706775) 1 NC_002950.2 hypothetical protein 706775 2552551 PG0654 Porphyromonas gingivalis W83 hypothetical protein NP_904934.1 705603 R 242619 CDS NP_904935.1 34540456 2552562 706852..706947 1 NC_002950.2 hypothetical protein 706947 2552562 PG0655 Porphyromonas gingivalis W83 hypothetical protein NP_904935.1 706852 D 242619 CDS NP_904936.1 34540457 2552567 complement(707035..707187) 1 NC_002950.2 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 707187 rpmH 2552567 rpmH Porphyromonas gingivalis W83 50S ribosomal protein L34 NP_904936.1 707035 R 242619 CDS NP_904937.1 34540458 2552588 complement(707249..707872) 1 NC_002950.2 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 707872 maf 2552588 maf Porphyromonas gingivalis W83 Maf-like protein NP_904937.1 707249 R 242619 CDS NP_904938.1 34540459 2552590 complement(707888..708409) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01681; YrbI family phosphatase 708409 2552590 PG0658 Porphyromonas gingivalis W83 YrbI family phosphatase NP_904938.1 707888 R 242619 CDS NP_904939.1 34540460 2552594 complement(708426..709238) 1 NC_002950.2 similar to GB:L29436, and PID:459904; identified by sequence similarity; putative; hypothetical protein 709238 2552594 PG0659 Porphyromonas gingivalis W83 hypothetical protein NP_904939.1 708426 R 242619 CDS NP_904940.1 34540461 2552595 complement(709231..709785) 1 NC_002950.2 nitroreductase 709785 2552595 PG0660 Porphyromonas gingivalis W83 nitroreductase NP_904940.1 709231 R 242619 CDS NP_904941.1 34540462 2552596 complement(709782..709943) 1 NC_002950.2 hypothetical protein 709943 2552596 PG0661 Porphyromonas gingivalis W83 hypothetical protein NP_904941.1 709782 R 242619 CDS NP_904942.1 34540463 2552591 710007..710216 1 NC_002950.2 hypothetical protein 710216 2552591 PG0662 Porphyromonas gingivalis W83 hypothetical protein NP_904942.1 710007 D 242619 CDS NP_904943.1 34540464 2552598 710433..711920 1 NC_002950.2 Gfo/Idh/MocA family oxidoreductase 711920 2552598 PG0664 Porphyromonas gingivalis W83 Gfo/Idh/MocA family oxidoreductase NP_904943.1 710433 D 242619 CDS NP_904944.1 34540465 2552603 711967..715305 1 NC_002950.2 beta-galactosidase 715305 lacZ-1 2552603 lacZ-1 Porphyromonas gingivalis W83 beta-galactosidase NP_904944.1 711967 D 242619 CDS NP_904945.1 34540466 2552608 717591..719864 1 NC_002950.2 TonB-dependent receptor 719864 2552608 PG0668 Porphyromonas gingivalis W83 TonB-dependent receptor NP_904945.1 717591 D 242619 CDS NP_904946.1 34540467 2552613 719893..720774 1 NC_002950.2 heme-binding protein FetB 720774 fetB 2552613 fetB Porphyromonas gingivalis W83 heme-binding protein FetB NP_904946.1 719893 D 242619 CDS NP_904947.1 34540468 2552614 720892..722031 1 NC_002950.2 similar to GB:Z14955, GB:Z14954, GB:Z29574, GB:Z29575, SP:Q02223, PID:1930146, PID:29408, PID:33807, PID:471245, and PID:499189; identified by sequence similarity; putative; putative lipoprotein 722031 2552614 PG0670 Porphyromonas gingivalis W83 putative lipoprotein NP_904947.1 720892 D 242619 CDS NP_904948.1 34540469 2552619 722028..723098 1 NC_002950.2 iron ABC transporter permease 723098 2552619 PG0671 Porphyromonas gingivalis W83 iron ABC transporter permease NP_904948.1 722028 D 242619 CDS NP_904949.1 34540470 2552620 723142..723900 1 NC_002950.2 similar to GB:L23560, SP:P01743, SP:P23083, PID:499592, PID:509804, PID:553397, PID:553411, PID:553471, PID:560840, PID:567116, PID:619770, PID:619775, and PID:860978; identified by sequence similarity; putative; iron ABC transporter ATP-binding protein 723900 2552620 PG0672 Porphyromonas gingivalis W83 iron ABC transporter ATP-binding protein NP_904949.1 723142 D 242619 CDS NP_904950.1 34540471 2551495 complement(724299..724892) 1 NC_002950.2 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta 724892 iorB 2551495 iorB Porphyromonas gingivalis W83 indolepyruvate oxidoreductase subunit beta NP_904950.1 724299 R 242619 CDS NP_904951.1 34540472 2551499 complement(724919..726526) 1 NC_002950.2 similar to SP:P09192, GB:L36958, PID:1161271, PID:558141, PID:1001364, SP:P09192, GB:L36958, PID:1161271, PID:558141, and PID:1001364; identified by sequence similarity; putative; indolepyruvate ferredoxin oxidoreductase subunit alpha 726526 iorA 2551499 iorA Porphyromonas gingivalis W83 indolepyruvate ferredoxin oxidoreductase subunit alpha NP_904951.1 724919 R 242619 CDS NP_904952.1 34540473 2552627 complement(726604..727365) 1 NC_002950.2 short chain dehydrogenase/reductase oxidoreductase 727365 2552627 PG0676 Porphyromonas gingivalis W83 short chain dehydrogenase/reductase oxidoreductase NP_904952.1 726604 R 242619 CDS NP_904953.1 34540474 2552642 727793..728986 1 NC_002950.2 similar to GB:M22488, GB:L35279, GB:L35278, SP:P13497, and PID:619424; identified by sequence similarity; putative; saccharopine dehydrogenase 728986 LYS1 2552642 LYS1 Porphyromonas gingivalis W83 saccharopine dehydrogenase NP_904953.1 727793 D 242619 CDS NP_904954.1 34540475 2552629 729019..729531 1 NC_002950.2 similar to GB:X67514, and PID:433461; identified by sequence similarity; putative; pyrazinamidase/nicotinamidase 729531 2552629 PG0678 Porphyromonas gingivalis W83 pyrazinamidase/nicotinamidase NP_904954.1 729019 D 242619 CDS NP_904955.1 34540476 2552639 729734..731068 1 NC_002950.2 previously submitted to Genbank by Ross, et al as immunoreactive 50kD antigen PG53; outer membrane efflux protein 731068 2552639 PG0679 Porphyromonas gingivalis W83 outer membrane efflux protein NP_904955.1 729734 D 242619 CDS NP_904956.1 34540477 2552640 731108..732361 1 NC_002950.2 RND family efflux transporter MFP subunit 732361 2552640 PG0680 Porphyromonas gingivalis W83 RND family efflux transporter MFP subunit NP_904956.1 731108 D 242619 CDS NP_904957.1 34540478 2552644 complement(732501..732809) 1 NC_002950.2 hypothetical protein 732809 2552644 PG0681 Porphyromonas gingivalis W83 hypothetical protein NP_904957.1 732501 R 242619 CDS NP_904958.1 34540479 2552632 733011..735362 1 NC_002950.2 ABC transporter permease 735362 2552632 PG0682 Porphyromonas gingivalis W83 ABC transporter permease NP_904958.1 733011 D 242619 CDS NP_904959.1 34540480 2552634 735395..737761 1 NC_002950.2 ABC transporter permease 737761 2552634 PG0683 Porphyromonas gingivalis W83 ABC transporter permease NP_904959.1 735395 D 242619 CDS NP_904960.1 34540481 2552638 737788..740163 1 NC_002950.2 ABC transporter permease 740163 2552638 PG0684 Porphyromonas gingivalis W83 ABC transporter permease NP_904960.1 737788 D 242619 CDS NP_904961.1 34540482 2552631 740256..740915 1 NC_002950.2 ABC transporter ATP-binding protein 740915 2552631 PG0685 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_904961.1 740256 D 242619 CDS NP_904962.1 34540483 2552626 complement(741221..742774) 1 NC_002950.2 hypothetical protein 742774 2552626 PG0686 Porphyromonas gingivalis W83 hypothetical protein NP_904962.1 741221 R 242619 CDS NP_904963.1 34540484 2551522 complement(743258..744613) 1 NC_002950.2 similar to GB:Z18284, GB:L26494, SP:P20264, SP:Q03052, PID:35134, PID:508990, GB:Z18284, GB:L26494, SP:P20264, SP:Q03052, PID:35134, and PID:508990; identified by sequence similarity; putative; succinate-semialdehyde dehydrogenase 744613 sucD 2551522 sucD Porphyromonas gingivalis W83 succinate-semialdehyde dehydrogenase NP_904963.1 743258 R 242619 CDS NP_904964.1 34540485 2552693 complement(744808..745923) 1 NC_002950.2 similar to GB:D11144, GB:D11145, GB:D11146, GB:D11147, GB:D11148, GB:D11149, GB:D11150, GB:D11151, GB:L06622, GB:S45956, GB:S81539, SP:P25101, PID:181957, PID:219630, PID:219650, and PID:288313; identified by sequence similarity; putative; NAD-dependent 4-hydroxybutyrate dehydrogenase 745923 4hbD 2552693 4hbD Porphyromonas gingivalis W83 NAD-dependent 4-hydroxybutyrate dehydrogenase NP_904964.1 744808 R 242619 CDS NP_904965.1 34540486 2552694 complement(745974..747269) 1 NC_002950.2 4-hydroxybutyrate CoA-transferase 747269 abfT-1 2552694 abfT-1 Porphyromonas gingivalis W83 4-hydroxybutyrate CoA-transferase NP_904965.1 745974 R 242619 CDS NP_904966.1 34540487 2552650 complement(747275..747559) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01106; NifU-like protein 747559 2552650 PG0691 Porphyromonas gingivalis W83 NifU-like protein NP_904966.1 747275 R 242619 CDS NP_904967.1 34540488 2552648 complement(747632..749092) 1 NC_002950.2 4-hydroxybutyryl-CoA dehydratase 749092 abfD 2552648 abfD Porphyromonas gingivalis W83 4-hydroxybutyryl-CoA dehydratase NP_904967.1 747632 R 242619 CDS NP_904968.1 34540489 2552690 complement(749793..750935) 1 NC_002950.2 hypothetical protein 750935 2552690 PG0694 Porphyromonas gingivalis W83 hypothetical protein NP_904968.1 749793 R 242619 CDS NP_904969.1 34540490 2552740 complement(750982..752157) 1 NC_002950.2 hypothetical protein 752157 2552740 PG0695 Porphyromonas gingivalis W83 hypothetical protein NP_904969.1 750982 R 242619 CDS NP_904970.1 34540491 2552741 complement(752463..753446) 1 NC_002950.2 putative lipoprotein 753446 2552741 PG0698 Porphyromonas gingivalis W83 putative lipoprotein NP_904970.1 752463 R 242619 CDS NP_904971.1 34540492 2552725 complement(753478..756048) 1 NC_002950.2 maltodextrin phosphorylase 756048 malP 2552725 malP Porphyromonas gingivalis W83 maltodextrin phosphorylase NP_904971.1 753478 R 242619 CDS NP_904972.1 34540493 2552728 complement(756173..756685) 1 NC_002950.2 hypothetical protein 756685 2552728 PG0700 Porphyromonas gingivalis W83 hypothetical protein NP_904972.1 756173 R 242619 CDS NP_904973.1 34540494 2552671 756651..757187 1 NC_002950.2 similar to GB:U05040, and PID:460152; identified by sequence similarity; putative; cobinamide kinase/cobinamide phosphate guanylyltransferase 757187 cobU 2552671 cobU Porphyromonas gingivalis W83 cobinamide kinase/cobinamide phosphate guanylyltransferase NP_904973.1 756651 D 242619 CDS NP_904974.1 34540495 2552673 757240..758277 1 NC_002950.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 758277 2552673 PG0702 Porphyromonas gingivalis W83 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase NP_904974.1 757240 D 242619 CDS NP_904975.1 34540496 2552672 758284..759066 1 NC_002950.2 cobalamin (5'-phosphate) synthase 759066 2552672 PG0703 Porphyromonas gingivalis W83 cobalamin (5'-phosphate) synthase NP_904975.1 758284 D 242619 CDS NP_904976.1 34540497 2552675 759068..759607 1 NC_002950.2 similar to GB:M64120, SP:P28030, and PID:155295; identified by sequence similarity; putative; phosphoglycerate mutase 759607 2552675 PG0704 Porphyromonas gingivalis W83 phosphoglycerate mutase NP_904976.1 759068 D 242619 CDS NP_904977.1 34540498 2552652 759669..760493 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00035; glutamate racemase 760493 murI 2552652 murI Porphyromonas gingivalis W83 glutamate racemase NP_904977.1 759669 D 242619 CDS NP_904978.1 34540499 2552681 760490..760942 1 NC_002950.2 identified by match to PFAM protein family HMM PF03724; hypothetical protein 760942 2552681 PG0706 Porphyromonas gingivalis W83 hypothetical protein NP_904978.1 760490 D 242619 CDS NP_904979.1 34540500 2552729 complement(761176..763722) 1 NC_002950.2 TonB-dependent receptor 763722 2552729 PG0707 Porphyromonas gingivalis W83 TonB-dependent receptor NP_904979.1 761176 R 242619 CDS NP_904980.1 34540501 2552732 complement(763888..764718) 1 NC_002950.2 FKBP-type peptidylprolyl isomerase 764718 2552732 PG0708 Porphyromonas gingivalis W83 FKBP-type peptidylprolyl isomerase NP_904980.1 763888 R 242619 CDS NP_904981.1 34540502 2552730 complement(764746..765507) 1 NC_002950.2 similar to GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; putative; peptidyl-prolyl cis-trans isomerase FkpA 765507 fkpA 2552730 fkpA Porphyromonas gingivalis W83 peptidyl-prolyl cis-trans isomerase FkpA NP_904981.1 764746 R 242619 CDS NP_904982.1 34540503 2552733 complement(765537..766124) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01346; FKBP-type peptidylprolyl isomerase 766124 2552733 PG0710 Porphyromonas gingivalis W83 FKBP-type peptidylprolyl isomerase NP_904982.1 765537 R 242619 CDS NP_904983.1 34540504 2552735 766210..766341 1 NC_002950.2 hypothetical protein 766341 2552735 PG0711 Porphyromonas gingivalis W83 hypothetical protein NP_904983.1 766210 D 242619 CDS NP_904984.1 34540505 2552687 complement(766874..767221) 1 NC_002950.2 hypothetical protein 767221 2552687 PG0712 Porphyromonas gingivalis W83 hypothetical protein NP_904984.1 766874 R 242619 CDS NP_904985.1 34540506 2552708 complement(767243..767839) 1 NC_002950.2 similar to GB:N00031, GB:L00354, GB:N00050, SP:P06307, and PID:179996; identified by sequence similarity; putative; anthranilate synthase component II 767839 trpG 2552708 trpG Porphyromonas gingivalis W83 anthranilate synthase component II NP_904985.1 767243 R 242619 CDS NP_904986.1 34540507 2552697 complement(768015..768761) 1 NC_002950.2 identified by match to PFAM protein family HMM PF03932; copper homeostasis protein CutC 768761 cutC 2552697 cutC Porphyromonas gingivalis W83 copper homeostasis protein CutC NP_904986.1 768015 R 242619 CDS NP_904987.1 34540508 2552700 complement(768766..769686) 1 NC_002950.2 similar to GB:L19084, SP:P33668, PID:304942, GB:U00096, PID:1773180, and PID:1786707; identified by sequence similarity; putative; transporter 769686 2552700 PG0715 Porphyromonas gingivalis W83 transporter NP_904987.1 768766 R 242619 CDS NP_904988.1 34540509 2552683 complement(770081..771184) 1 NC_002950.2 putative lipoprotein 771184 2552683 PG0717 Porphyromonas gingivalis W83 putative lipoprotein NP_904988.1 770081 R 242619 CDS NP_904989.1 34540510 2552668 complement(771226..771663) 1 NC_002950.2 hypothetical protein 771663 2552668 PG0718 Porphyromonas gingivalis W83 hypothetical protein NP_904989.1 771226 R 242619 CDS NP_904990.1 34540511 2552684 complement(771786..773069) 1 NC_002950.2 sensor histidine kinase 773069 2552684 PG0719 Porphyromonas gingivalis W83 sensor histidine kinase NP_904990.1 771786 R 242619 CDS NP_904991.1 34540512 2552674 complement(773066..773755) 1 NC_002950.2 DNA-binding response regulator 773755 2552674 PG0720 Porphyromonas gingivalis W83 DNA-binding response regulator NP_904991.1 773066 R 242619 CDS NP_904992.1 34540513 2552720 773987..774595 1 NC_002950.2 similar to GB:D26166, and PID:442483; identified by sequence similarity; putative; NLP/P60 family protein 774595 2552720 PG0721 Porphyromonas gingivalis W83 NLP/P60 family protein NP_904992.1 773987 D 242619 CDS NP_904993.1 34540514 2552649 complement(774829..774981) 1 NC_002950.2 hypothetical protein 774981 2552649 PG0722 Porphyromonas gingivalis W83 hypothetical protein NP_904993.1 774829 R 242619 CDS NP_904994.1 34540515 2552676 775089..775415 1 NC_002950.2 hypothetical protein 775415 2552676 PG0723 Porphyromonas gingivalis W83 hypothetical protein NP_904994.1 775089 D 242619 CDS NP_904995.1 34540516 2552678 775369..777315 1 NC_002950.2 prolyl oligopeptidase 777315 2552678 PG0724 Porphyromonas gingivalis W83 prolyl oligopeptidase NP_904995.1 775369 D 242619 CDS NP_904996.1 34540517 2552679 777400..778026 1 NC_002950.2 similar to GB:X54057, and PID:48509; identified by sequence similarity; putative; HAD superfamily hydrolase 778026 2552679 PG0725 Porphyromonas gingivalis W83 HAD superfamily hydrolase NP_904996.1 777400 D 242619 CDS NP_904997.1 34540518 2552680 complement(778093..778482) 1 NC_002950.2 putative lipoprotein 778482 2552680 PG0726 Porphyromonas gingivalis W83 putative lipoprotein NP_904997.1 778093 R 242619 CDS NP_904998.1 34540519 2552665 complement(778479..778685) 1 NC_002950.2 hypothetical protein 778685 2552665 PG0727 Porphyromonas gingivalis W83 hypothetical protein NP_904998.1 778479 R 242619 CDS NP_904999.1 34540520 2552710 complement(778731..779897) 1 NC_002950.2 hypothetical protein 779897 2552710 PG0728 Porphyromonas gingivalis W83 hypothetical protein NP_904999.1 778731 R 242619 CDS NP_905000.1 34540521 2552707 complement(779916..780908) 1 NC_002950.2 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 780908 ddl 2552707 ddl Porphyromonas gingivalis W83 D-alanyl-alanine synthetase A NP_905000.1 779916 R 242619 CDS NP_905001.1 34540522 2552701 complement(782110..782766) 1 NC_002950.2 hypothetical protein 782766 2552701 PG0731 Porphyromonas gingivalis W83 hypothetical protein NP_905001.1 782110 R 242619 CDS NP_905002.1 34540523 2552703 782761..783078 1 NC_002950.2 hypothetical protein 783078 2552703 PG0732 Porphyromonas gingivalis W83 hypothetical protein NP_905002.1 782761 D 242619 CDS NP_905003.1 34540524 2552705 783314..783916 1 NC_002950.2 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 783916 ribE 2552705 ribE Porphyromonas gingivalis W83 riboflavin synthase subunit alpha NP_905003.1 783314 D 242619 CDS NP_905004.1 34540525 2552721 783913..784464 1 NC_002950.2 similar to SP:P37718, GB:X54676, and PID:580743; identified by sequence similarity; putative; nitroreductase 784464 2552721 PG0734 Porphyromonas gingivalis W83 nitroreductase NP_905004.1 783913 D 242619 CDS NP_905005.1 34540526 2552722 784523..785737 1 NC_002950.2 class V aminotransferase 785737 2552722 PG0735 Porphyromonas gingivalis W83 class V aminotransferase NP_905005.1 784523 D 242619 CDS NP_905006.1 34540527 2552686 785748..786353 1 NC_002950.2 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 786353 rnhB 2552686 rnhB Porphyromonas gingivalis W83 ribonuclease HII NP_905006.1 785748 D 242619 CDS NP_905007.1 34540528 2552714 786328..786606 1 NC_002950.2 identified by match to PFAM protein family HMM PF01402; hypothetical protein 786606 2552714 PG0737 Porphyromonas gingivalis W83 hypothetical protein NP_905007.1 786328 D 242619 CDS NP_905008.1 34540529 2552715 786603..787055 1 NC_002950.2 similar to GB:X63768, and PID:47572; identified by sequence similarity; putative; cytidine/deoxycytidylate deaminase 787055 2552715 PG0738 Porphyromonas gingivalis W83 cytidine/deoxycytidylate deaminase NP_905008.1 786603 D 242619 CDS NP_905009.1 34540530 2552663 787087..788001 1 NC_002950.2 member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 788001 2552663 PG0739 Porphyromonas gingivalis W83 ribonuclease Z NP_905009.1 787087 D 242619 CDS NP_905010.1 34540531 2552664 787976..788545 1 NC_002950.2 similar to GB:D26166, and PID:442483; identified by sequence similarity; putative; NLP/P60 family protein 788545 2552664 PG0740 Porphyromonas gingivalis W83 NLP/P60 family protein NP_905010.1 787976 D 242619 CDS NP_905011.1 34540532 2552654 complement(788807..789406) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01844; hypothetical protein 789406 2552654 PG0741 Porphyromonas gingivalis W83 hypothetical protein NP_905011.1 788807 R 242619 CDS NP_905012.1 34540533 2552657 complement(789390..790727) 1 NC_002950.2 similar to GB:L20916, SP:Q08360, PID:443723, and GB:AL009126; identified by sequence similarity; putative; antigen PgaA 790727 pgaA 2552657 pgaA Porphyromonas gingivalis W83 antigen PgaA NP_905012.1 789390 R 242619 CDS NP_905013.1 34540534 2552658 complement(791223..791987) 1 NC_002950.2 RNA methyltransferase 791987 2552658 PG0744 Porphyromonas gingivalis W83 RNA methyltransferase NP_905013.1 791223 R 242619 CDS NP_905014.1 34540535 2551520 complement(792072..792470) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00068; lactoylglutathione lyase 792470 2551520 PG0745 Porphyromonas gingivalis W83 lactoylglutathione lyase NP_905014.1 792072 R 242619 CDS NP_905015.1 34540536 2551506 complement(792626..793993) 1 NC_002950.2 sensor histidine kinase 793993 2551506 PG0746 Porphyromonas gingivalis W83 sensor histidine kinase NP_905015.1 792626 R 242619 CDS NP_905016.1 34540537 2551510 complement(793990..795384) 1 NC_002950.2 similar to GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, PID:825686, GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, and PID:825686; identified by sequence similarity; putative; sigma-54 dependent DNA-binding response regulator 795384 2551510 PG0747 Porphyromonas gingivalis W83 sigma-54 dependent DNA-binding response regulator NP_905016.1 793990 R 242619 CDS NP_905017.1 34540538 2551508 complement(795628..795744) 1 NC_002950.2 hypothetical protein 795744 2551508 PG0749 Porphyromonas gingivalis W83 hypothetical protein NP_905017.1 795628 R 242619 CDS NP_905018.1 34540539 2551504 complement(796036..796782) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00535; glycosyl transferase group 2 family protein 796782 2551504 PG0750 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_905018.1 796036 R 242619 CDS NP_905019.1 34540540 2552734 complement(796934..797668) 1 NC_002950.2 porT protein 797668 porT 2552734 porT Porphyromonas gingivalis W83 porT protein NP_905019.1 796934 R 242619 CDS NP_905020.1 34540541 2552744 797807..798457 1 NC_002950.2 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 798457 upp 2552744 upp Porphyromonas gingivalis W83 uracil phosphoribosyltransferase NP_905020.1 797807 D 242619 CDS NP_905021.1 34540542 2552742 798441..800348 1 NC_002950.2 protease 800348 prtQ 2552742 prtQ Porphyromonas gingivalis W83 protease NP_905021.1 798441 D 242619 CDS NP_905022.1 34540543 2552750 801083..803449 1 NC_002950.2 DNA topoisomerase I 803449 topA 2552750 topA Porphyromonas gingivalis W83 DNA topoisomerase I NP_905022.1 801083 D 242619 CDS NP_905023.1 34540544 2552753 complement(804411..805763) 1 NC_002950.2 hypothetical protein 805763 2552753 PG0756 Porphyromonas gingivalis W83 hypothetical protein NP_905023.1 804411 R 242619 CDS NP_905024.1 34540545 2552754 complement(805813..806460) 1 NC_002950.2 hypothetical protein 806460 2552754 PG0757 Porphyromonas gingivalis W83 hypothetical protein NP_905024.1 805813 R 242619 CDS NP_905025.1 34540546 2552748 complement(806557..808644) 1 NC_002950.2 peptidyl-dipeptidase Dcp 808644 dcp-1 2552748 dcp-1 Porphyromonas gingivalis W83 peptidyl-dipeptidase Dcp NP_905025.1 806557 R 242619 CDS NP_905026.1 34540547 2552756 complement(808722..810875) 1 NC_002950.2 hypothetical protein 810875 2552756 PG0759 Porphyromonas gingivalis W83 hypothetical protein NP_905026.1 808722 R 242619 CDS NP_905027.1 34540548 2552758 812899..814275 1 NC_002950.2 similar to GB:M86737, SP:Q08945, and PID:184242; identified by sequence similarity; putative; trigger factor 814275 2552758 PG0762 Porphyromonas gingivalis W83 trigger factor NP_905027.1 812899 D 242619 CDS NP_905028.1 34540549 2552025 complement(816264..818495) 1 NC_002950.2 similar to SP:P08367, GB:M97495, GB:M13608, PID:147249, PID:147691, PID:537237, and PID:1790859; identified by sequence similarity; putative; polynucleotide phosphorylase 818495 pnpA 2552025 pnpA Porphyromonas gingivalis W83 polynucleotide phosphorylase NP_905028.1 816264 R 242619 CDS NP_905029.1 34540550 2552026 complement(818647..820623) 1 NC_002950.2 4-alpha-glucanotransferase 820623 malQ 2552026 malQ Porphyromonas gingivalis W83 4-alpha-glucanotransferase NP_905029.1 818647 R 242619 CDS NP_905030.1 34540551 2552027 complement(821365..822471) 1 NC_002950.2 hypothetical protein 822471 2552027 PG0768 Porphyromonas gingivalis W83 hypothetical protein NP_905030.1 821365 R 242619 CDS NP_905031.1 34540552 2552029 complement(822645..824267) 1 NC_002950.2 fibronectin type III 824267 2552029 PG0769 Porphyromonas gingivalis W83 fibronectin type III NP_905031.1 822645 R 242619 CDS NP_905032.1 34540553 2552030 complement(824249..824665) 1 NC_002950.2 hypothetical protein 824665 2552030 PG0770 Porphyromonas gingivalis W83 hypothetical protein NP_905032.1 824249 R 242619 CDS NP_905033.1 34540554 2552759 824664..824927 1 NC_002950.2 hypothetical protein 824927 2552759 PG0771 Porphyromonas gingivalis W83 hypothetical protein NP_905033.1 824664 D 242619 CDS NP_905034.1 34540555 2552760 825115..825264 1 NC_002950.2 hypothetical protein 825264 2552760 PG0772 Porphyromonas gingivalis W83 hypothetical protein NP_905034.1 825115 D 242619 CDS NP_905035.1 34540556 2552761 825271..825408 1 NC_002950.2 hypothetical protein 825408 2552761 PG0773 Porphyromonas gingivalis W83 hypothetical protein NP_905035.1 825271 D 242619 CDS NP_905036.1 34540557 2552763 complement(825787..827031) 1 NC_002950.2 hypothetical protein 827031 2552763 PG0774 Porphyromonas gingivalis W83 hypothetical protein NP_905036.1 825787 R 242619 CDS NP_905037.1 34540558 2552766 complement(827522..829243) 1 NC_002950.2 acyl-CoA dehydrogenase 829243 2552766 PG0775 Porphyromonas gingivalis W83 acyl-CoA dehydrogenase NP_905037.1 827522 R 242619 CDS NP_905038.1 34540559 2552768 complement(829255..830274) 1 NC_002950.2 similar to GB:M13144, GB:M13981, GB:X04446, GB:X04445, SP:P05111, PID:1204105, PID:186413, PID:307068, and PID:490130; identified by sequence similarity; putative; electron transfer flavoprotein subunit alpha 830274 etfA-1 2552768 etfA-1 Porphyromonas gingivalis W83 electron transfer flavoprotein subunit alpha NP_905038.1 829255 R 242619 CDS NP_905039.1 34540560 2552764 complement(830283..831149) 1 NC_002950.2 electron transfer flavoprotein subunit beta 831149 etfB-1 2552764 etfB-1 Porphyromonas gingivalis W83 electron transfer flavoprotein subunit beta NP_905039.1 830283 R 242619 CDS NP_905040.1 34540561 2552769 complement(831240..831959) 1 NC_002950.2 similar to SP:P05974; identified by sequence similarity; putative; hypothetical protein 831959 2552769 PG0778 Porphyromonas gingivalis W83 hypothetical protein NP_905040.1 831240 R 242619 CDS NP_905041.1 34540562 2552765 complement(832190..832663) 1 NC_002950.2 hypothetical protein 832663 2552765 PG0779 Porphyromonas gingivalis W83 hypothetical protein NP_905041.1 832190 R 242619 CDS NP_905042.1 34540563 2552774 complement(832679..833293) 1 NC_002950.2 hypothetical protein 833293 2552774 PG0780 Porphyromonas gingivalis W83 hypothetical protein NP_905042.1 832679 R 242619 CDS NP_905043.1 34540564 2552775 complement(833329..833799) 1 NC_002950.2 hypothetical protein 833799 2552775 PG0781 Porphyromonas gingivalis W83 hypothetical protein NP_905043.1 833329 R 242619 CDS NP_905044.1 34540565 2552776 complement(833808..834620) 1 NC_002950.2 MotA/TolQ/ExbB proton channel family protein 834620 2552776 PG0782 Porphyromonas gingivalis W83 MotA/TolQ/ExbB proton channel family protein NP_905044.1 833808 R 242619 CDS NP_905045.1 34540566 2552777 complement(834968..835795) 1 NC_002950.2 hydrolase 835795 2552777 PG0783 Porphyromonas gingivalis W83 hydrolase NP_905045.1 834968 R 242619 CDS NP_905046.1 34540567 2552782 complement(835842..836819) 1 NC_002950.2 similar to GB:L34060, SP:P55286, and PID:506412; identified by sequence similarity; putative; polyprenyl synthetase 836819 2552782 PG0784 Porphyromonas gingivalis W83 polyprenyl synthetase NP_905046.1 835842 R 242619 CDS NP_905047.1 34540568 2552784 complement(836990..837682) 1 NC_002950.2 tonB protein 837682 2552784 PG0785 Porphyromonas gingivalis W83 tonB protein NP_905047.1 836990 R 242619 CDS NP_905048.1 34540569 2552781 complement(837660..837782) 1 NC_002950.2 hypothetical protein 837782 2552781 PG0786 Porphyromonas gingivalis W83 hypothetical protein NP_905048.1 837660 R 242619 CDS NP_905049.1 34540570 2552771 837815..838057 1 NC_002950.2 hypothetical protein 838057 2552771 PG0787 Porphyromonas gingivalis W83 hypothetical protein NP_905049.1 837815 D 242619 CDS NP_905050.1 34540571 2552780 complement(838133..840766) 1 NC_002950.2 hypothetical protein 840766 2552780 PG0788 Porphyromonas gingivalis W83 hypothetical protein NP_905050.1 838133 R 242619 CDS NP_905051.1 34540572 2552789 complement(840792..841508) 1 NC_002950.2 hypothetical protein 841508 2552789 PG0789 Porphyromonas gingivalis W83 hypothetical protein NP_905051.1 840792 R 242619 CDS NP_905052.1 34540573 2552791 complement(841489..842673) 1 NC_002950.2 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 842673 obgE 2552791 obgE Porphyromonas gingivalis W83 GTPase ObgE NP_905052.1 841489 R 242619 CDS NP_905053.1 34540574 2552793 complement(842683..843267) 1 NC_002950.2 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 843267 adk 2552793 adk Porphyromonas gingivalis W83 adenylate kinase NP_905053.1 842683 R 242619 CDS NP_905054.1 34540575 2552792 complement(843268..843804) 1 NC_002950.2 similar to GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, and GB:Z14228; identified by sequence similarity; putative; hypoxanthine phosphoribosyltransferase 843804 hpt 2552792 hpt Porphyromonas gingivalis W83 hypoxanthine phosphoribosyltransferase NP_905054.1 843268 R 242619 CDS NP_905055.1 34540576 2552795 844428..846395 1 NC_002950.2 similar to GB:U07794, GB:U07793, GB:L27071, GB:U07791, GB:U07792, SP:P42681, PID:1161364, PID:508223, PID:508224, and PID:684986; identified by sequence similarity; putative; fructose-1,6-bisphosphatase 846395 fbp 2552795 fbp Porphyromonas gingivalis W83 fructose-1,6-bisphosphatase NP_905055.1 844428 D 242619 CDS NP_905056.1 34540577 2552787 846551..848911 1 NC_002950.2 penicillin-binding protein 1A 848911 2552787 PG0794 Porphyromonas gingivalis W83 penicillin-binding protein 1A NP_905056.1 846551 D 242619 CDS NP_905057.1 34540578 2552797 848953..849663 1 NC_002950.2 similar to SP:P15318, GB:Y00545, PID:396666, PID:39732, PID:412231, and PID:580668; identified by sequence similarity; putative; hypothetical protein 849663 2552797 PG0795 Porphyromonas gingivalis W83 hypothetical protein NP_905057.1 848953 D 242619 CDS NP_905058.1 34540579 2552799 complement(849763..852540) 1 NC_002950.2 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 852540 leuS 2552799 leuS Porphyromonas gingivalis W83 leucyl-tRNA synthetase NP_905058.1 849763 R 242619 CDS NP_905059.1 34540580 2552801 852985..853887 1 NC_002950.2 ISPg3, transposase 853887 2552801 PG0798 Porphyromonas gingivalis W83 ISPg3, transposase NP_905059.1 852985 D 242619 CDS NP_905060.1 34540581 2552803 854474..854659 1 NC_002950.2 hypothetical protein 854659 2552803 PG0799 Porphyromonas gingivalis W83 hypothetical protein NP_905060.1 854474 D 242619 CDS NP_905061.1 34540582 2552807 complement(854809..856368) 1 NC_002950.2 hypothetical protein 856368 2552807 PG0800 Porphyromonas gingivalis W83 hypothetical protein NP_905061.1 854809 R 242619 CDS NP_905062.1 34540583 2552809 complement(856353..857804) 1 NC_002950.2 poly(A) polymerase 857804 2552809 PG0801 Porphyromonas gingivalis W83 poly(A) polymerase NP_905062.1 856353 R 242619 CDS NP_905063.1 34540584 2552810 complement(858463..859812) 1 NC_002950.2 similar to GB:M14584, GB:Y00081, GB:M18403, GB:S56892, GB:X04403, GB:A09367, GB:M54894, GB:X04602, GB:M29150, SP:P05231, PID:186352, PID:23833, PID:23835, PID:29495, PID:306910, PID:306911, PID:307063, PID:32674, PID:33850, PID:490070, GB:Z22970, and PID:312146; identified by sequence similarity; putative; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase 859812 pdhD 2552810 pdhD Porphyromonas gingivalis W83 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase NP_905063.1 858463 R 242619 CDS NP_905064.1 34540585 2552811 complement(859817..860608) 1 NC_002950.2 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 860608 nagB 2552811 nagB Porphyromonas gingivalis W83 glucosamine-6-phosphate deaminase NP_905064.1 859817 R 242619 CDS NP_905065.1 34540586 2552812 complement(860647..861855) 1 NC_002950.2 flavodoxin 861855 2552812 PG0804 Porphyromonas gingivalis W83 flavodoxin NP_905065.1 860647 R 242619 CDS NP_905066.1 34540587 2552813 complement(861889..862740) 1 NC_002950.2 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 862740 lgt 2552813 lgt Porphyromonas gingivalis W83 prolipoprotein diacylglyceryl transferase NP_905066.1 861889 R 242619 CDS NP_905067.1 34540588 2552814 complement(862777..863682) 1 NC_002950.2 Gfo/Idh/MocA family oxidoreductase 863682 2552814 PG0806 Porphyromonas gingivalis W83 Gfo/Idh/MocA family oxidoreductase NP_905067.1 862777 R 242619 CDS NP_905068.1 34540589 2552817 complement(863720..864814) 1 NC_002950.2 similar to GB:X59960, GB:X52679, GB:M59916, GB:M59917, GB:X52678, GB:M81780, GB:X63600, SP:P17405, PID:179095, PID:28880, PID:402621, PID:553192, PID:556809, PID:825629, PID:972769, and PID:972770; identified by sequence similarity; putative; NusB family protein 864814 2552817 PG0807 Porphyromonas gingivalis W83 NusB family protein NP_905068.1 863720 R 242619 CDS NP_905069.1 34540590 2552818 complement(865154..872104) 1 NC_002950.2 hypothetical protein 872104 2552818 PG0809 Porphyromonas gingivalis W83 hypothetical protein NP_905069.1 865154 R 242619 CDS NP_905070.1 34540591 2552819 complement(872067..872657) 1 NC_002950.2 hypothetical protein 872657 2552819 PG0810 Porphyromonas gingivalis W83 hypothetical protein NP_905070.1 872067 R 242619 CDS NP_905071.1 34540592 2552822 complement(872691..873299) 1 NC_002950.2 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 873299 ruvA 2552822 ruvA Porphyromonas gingivalis W83 Holliday junction DNA helicase RuvA NP_905071.1 872691 R 242619 CDS NP_905072.1 34540593 2552823 complement(875994..876341) 1 NC_002950.2 hypothetical protein 876341 2552823 PG0814 Porphyromonas gingivalis W83 hypothetical protein NP_905072.1 875994 R 242619 CDS NP_905073.1 34540594 2552821 876370..876507 1 NC_002950.2 hypothetical protein 876507 2552821 PG0815 Porphyromonas gingivalis W83 hypothetical protein NP_905073.1 876370 D 242619 CDS NP_905074.1 34540595 2552824 complement(876476..876949) 1 NC_002950.2 hypothetical protein 876949 2552824 PG0816 Porphyromonas gingivalis W83 hypothetical protein NP_905074.1 876476 R 242619 CDS NP_905075.1 34540596 2552825 877466..878695 1 NC_002950.2 integrase 878695 2552825 PG0819 Porphyromonas gingivalis W83 integrase NP_905075.1 877466 D 242619 CDS NP_905076.1 34540597 2552815 878721..879923 1 NC_002950.2 integrase 879923 2552815 PG0820 Porphyromonas gingivalis W83 integrase NP_905076.1 878721 D 242619 CDS NP_905077.1 34540598 2552805 879930..880292 1 NC_002950.2 putative lipoprotein 880292 2552805 PG0821 Porphyromonas gingivalis W83 putative lipoprotein NP_905077.1 879930 D 242619 CDS NP_905078.1 34540599 2552831 complement(880418..880825) 1 NC_002950.2 hypothetical protein 880825 2552831 PG0822 Porphyromonas gingivalis W83 hypothetical protein NP_905078.1 880418 R 242619 CDS NP_905079.1 34540600 2552832 880958..881272 1 NC_002950.2 similar to GB:L25896, PID:451865, GB:L25896, and PID:451865; identified by sequence similarity; putative; hypothetical protein 881272 2552832 PG0823 Porphyromonas gingivalis W83 hypothetical protein NP_905079.1 880958 D 242619 CDS NP_905080.1 34540601 2552829 881310..881990 1 NC_002950.2 hypothetical protein 881990 2552829 PG0824 Porphyromonas gingivalis W83 hypothetical protein NP_905080.1 881310 D 242619 CDS NP_905081.1 34540602 2552834 complement(882153..883238) 1 NC_002950.2 ISPg1, transposase 883238 2552834 PG0825 Porphyromonas gingivalis W83 ISPg1, transposase NP_905081.1 882153 R 242619 CDS NP_905082.1 34540603 2552837 883361..884209 1 NC_002950.2 AraC family transcriptional regulator 884209 2552837 PG0826 Porphyromonas gingivalis W83 AraC family transcriptional regulator NP_905082.1 883361 D 242619 CDS NP_905083.1 34540604 2552839 884306..885664 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein 885664 2552839 PG0827 Porphyromonas gingivalis W83 MATE efflux family protein NP_905083.1 884306 D 242619 CDS NP_905084.1 34540605 2552840 complement(886360..886836) 1 NC_002950.2 identified by match to PFAM protein family HMM PF02178; hypothetical protein 886836 2552840 PG0829 Porphyromonas gingivalis W83 hypothetical protein NP_905084.1 886360 R 242619 CDS NP_905085.1 34540606 2552843 887543..887971 1 NC_002950.2 hypothetical protein 887971 2552843 PG0831 Porphyromonas gingivalis W83 hypothetical protein NP_905085.1 887543 D 242619 CDS NP_905086.1 34540607 2552833 complement(888770..889798) 1 NC_002950.2 hypothetical protein 889798 2552833 PG0832 Porphyromonas gingivalis W83 hypothetical protein NP_905086.1 888770 R 242619 CDS NP_905087.1 34540608 2552846 complement(889798..891663) 1 NC_002950.2 hypothetical protein 891663 2552846 PG0833 Porphyromonas gingivalis W83 hypothetical protein NP_905087.1 889798 R 242619 CDS NP_905088.1 34540609 2552849 complement(892088..893350) 1 NC_002950.2 hypothetical protein 893350 2552849 PG0834 Porphyromonas gingivalis W83 hypothetical protein NP_905088.1 892088 R 242619 CDS NP_905089.1 34540610 2552850 893720..893857 1 NC_002950.2 hypothetical protein 893857 2552850 PG0835 Porphyromonas gingivalis W83 hypothetical protein NP_905089.1 893720 D 242619 CDS NP_905090.1 34540611 2552853 895617..896915 1 NC_002950.2 integrase 896915 2552853 PG0838 Porphyromonas gingivalis W83 integrase NP_905090.1 895617 D 242619 CDS NP_905091.1 34540612 2552856 897353..898534 1 NC_002950.2 hypothetical protein 898534 2552856 PG0839 Porphyromonas gingivalis W83 hypothetical protein NP_905091.1 897353 D 242619 CDS NP_905092.1 34540613 2552857 898512..902543 1 NC_002950.2 hypothetical protein 902543 2552857 PG0840 Porphyromonas gingivalis W83 hypothetical protein NP_905092.1 898512 D 242619 CDS NP_905093.1 34540614 2552859 complement(902871..903764) 1 NC_002950.2 mobilizable transposon, excision protein 903764 2552859 PG0841 Porphyromonas gingivalis W83 mobilizable transposon, excision protein NP_905093.1 902871 R 242619 CDS NP_905094.1 34540615 2552860 complement(903900..904964) 1 NC_002950.2 mobilizable transposon protein 904964 2552860 PG0842 Porphyromonas gingivalis W83 mobilizable transposon protein NP_905094.1 903900 R 242619 CDS NP_905095.1 34540616 2552861 complement(904961..905272) 1 NC_002950.2 hypothetical protein 905272 2552861 PG0843 Porphyromonas gingivalis W83 hypothetical protein NP_905095.1 904961 R 242619 CDS NP_905096.1 34540617 2552862 905429..905521 1 NC_002950.2 hypothetical protein 905521 2552862 PG0844 Porphyromonas gingivalis W83 hypothetical protein NP_905096.1 905429 D 242619 CDS NP_905097.1 34540618 2552868 907894..909474 1 NC_002950.2 hypothetical protein 909474 2552868 PG0847 Porphyromonas gingivalis W83 hypothetical protein NP_905097.1 907894 D 242619 CDS NP_905098.1 34540619 2552865 complement(909579..910577) 1 NC_002950.2 hypothetical protein 910577 2552865 PG0848 Porphyromonas gingivalis W83 hypothetical protein NP_905098.1 909579 R 242619 CDS NP_905099.1 34540620 2552844 complement(910562..911332) 1 NC_002950.2 hypothetical protein 911332 2552844 PG0849 Porphyromonas gingivalis W83 hypothetical protein NP_905099.1 910562 R 242619 CDS NP_905100.1 34540621 2552869 complement(911360..911668) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01764; excisionase DNA-binding protein 911668 2552869 PG0850 Porphyromonas gingivalis W83 excisionase DNA-binding protein NP_905100.1 911360 R 242619 CDS NP_905101.1 34540622 2552870 complement(911656..912822) 1 NC_002950.2 hypothetical protein 912822 2552870 PG0851 Porphyromonas gingivalis W83 hypothetical protein NP_905101.1 911656 R 242619 CDS NP_905102.1 34540623 2552871 914524..915009 1 NC_002950.2 histone-like family DNA-binding protein 915009 2552871 PG0853 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_905102.1 914524 D 242619 CDS NP_905103.1 34540624 2552873 915010..915828 1 NC_002950.2 hypothetical protein 915828 2552873 PG0854 Porphyromonas gingivalis W83 hypothetical protein NP_905103.1 915010 D 242619 CDS NP_905104.1 34540625 2552876 complement(916050..916145) 1 NC_002950.2 hypothetical protein 916145 2552876 PG0855 Porphyromonas gingivalis W83 hypothetical protein NP_905104.1 916050 R 242619 CDS NP_905105.1 34540626 2552877 916330..917235 1 NC_002950.2 hypothetical protein 917235 2552877 PG0856 Porphyromonas gingivalis W83 hypothetical protein NP_905105.1 916330 D 242619 CDS NP_905106.1 34540627 2552878 917459..917683 1 NC_002950.2 identified by match to PFAM protein family HMM PF01381; transcriptional regulator 917683 2552878 PG0857 Porphyromonas gingivalis W83 transcriptional regulator NP_905106.1 917459 D 242619 CDS NP_905107.1 34540628 2552879 917680..918015 1 NC_002950.2 similar to GB:D90318, GB:D90319, GB:D90320, GB:D90321, GB:D90322, GB:D90323, GB:D90324, GB:D90325, GB:D90326, GB:D90327, GB:D90328, GB:D90329, GB:D90330, GB:D90331, GB:D90332, GB:D90333, GB:D90334, GB:X16323, GB:M29145, GB:M60718, GB:M73239, SP:P14210, PID:1378042, PID:184032, PID:184034, PID:219700, PID:306846, PID:32082, PID:32084, and PID:337936; identified by sequence similarity; putative; hypothetical protein 918015 2552879 PG0858 Porphyromonas gingivalis W83 hypothetical protein NP_905107.1 917680 D 242619 CDS NP_905108.1 34540629 2552881 918005..918943 1 NC_002950.2 similar to GB:D90318, GB:D90319, GB:D90320, GB:D90321, GB:D90322, GB:D90323, GB:D90324, GB:D90325, GB:D90326, GB:D90327, GB:D90328, GB:D90329, GB:D90330, GB:D90331, GB:D90332, GB:D90333, GB:D90334, GB:X16323, GB:M29145, GB:M60718, GB:M73239, SP:P14210, PID:1378042, PID:184032, PID:184034, PID:219700, PID:306846, PID:32082, PID:32084, and PID:337936; identified by sequence similarity; putative; hypothetical protein 918943 2552881 PG0859 Porphyromonas gingivalis W83 hypothetical protein NP_905108.1 918005 D 242619 CDS NP_905109.1 34540630 2552882 919028..919333 1 NC_002950.2 transcriptional regulator 919333 2552882 PG0860 Porphyromonas gingivalis W83 transcriptional regulator NP_905109.1 919028 D 242619 CDS NP_905110.1 34540631 2552884 919387..922869 1 NC_002950.2 similar to GB:M36711, GB:M61156, GB:X77343, and SP:P05549; identified by sequence similarity; putative; Snf2/Rad54 family helicase 922869 2552884 PG0861 Porphyromonas gingivalis W83 Snf2/Rad54 family helicase NP_905110.1 919387 D 242619 CDS NP_905111.1 34540632 2552872 922880..926278 1 NC_002950.2 Possibly an isoschizomer of Eco57IR.; type IIS restriction endonuclease 926278 2552872 PG0862 Porphyromonas gingivalis W83 type IIS restriction endonuclease NP_905111.1 922880 D 242619 CDS NP_905112.1 34540633 2552887 complement(927139..927759) 1 NC_002950.2 in Bacteroides fragilis this site-specific serine recombinase globally regulates a number of loci involved in capsular polysaccharide production; multiple promoter invertase 927759 mpi 2552887 mpi Porphyromonas gingivalis W83 multiple promoter invertase NP_905112.1 927139 R 242619 CDS NP_905113.1 34540634 2552883 complement(927856..928986) 1 NC_002950.2 similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase 928986 2552883 PG0865 Porphyromonas gingivalis W83 ISPg2, transposase NP_905113.1 927856 R 242619 CDS NP_905114.1 34540635 2552889 929123..930268 1 NC_002950.2 hypothetical protein 930268 2552889 PG0866 Porphyromonas gingivalis W83 hypothetical protein NP_905114.1 929123 D 242619 CDS NP_905115.1 34540636 2552891 complement(930328..931023) 1 NC_002950.2 hypothetical protein 931023 2552891 PG0867 Porphyromonas gingivalis W83 hypothetical protein NP_905115.1 930328 R 242619 CDS NP_905116.1 34540637 2552892 complement(931020..931943) 1 NC_002950.2 similar to GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:; mobilization protein 931943 2552892 PG0868 Porphyromonas gingivalis W83 mobilization protein NP_905116.1 931020 R 242619 CDS NP_905117.1 34540638 2552896 complement(931940..932293) 1 NC_002950.2 mobilization protein 932293 2552896 PG0869 Porphyromonas gingivalis W83 mobilization protein NP_905117.1 931940 R 242619 CDS NP_905118.1 34540639 2552897 complement(932394..933452) 1 NC_002950.2 hypothetical protein 933452 2552897 PG0870 Porphyromonas gingivalis W83 hypothetical protein NP_905118.1 932394 R 242619 CDS NP_905119.1 34540640 2552898 complement(933550..934926) 1 NC_002950.2 hypothetical protein 934926 2552898 PG0871 Porphyromonas gingivalis W83 hypothetical protein NP_905119.1 933550 R 242619 CDS NP_905120.1 34540641 2552899 complement(934936..935295) 1 NC_002950.2 mobilizable transposon, Xis protein 935295 2552899 PG0872 Porphyromonas gingivalis W83 mobilizable transposon, Xis protein NP_905120.1 934936 R 242619 CDS NP_905121.1 34540642 2552900 complement(936200..936898) 1 NC_002950.2 mobilizable transposon, TnpC protein 936898 2552900 PG0873 Porphyromonas gingivalis W83 mobilizable transposon, TnpC protein NP_905121.1 936200 R 242619 CDS NP_905122.1 34540643 2552880 complement(937000..938103) 1 NC_002950.2 mobilizable transposon, int protein 938103 2552880 PG0874 Porphyromonas gingivalis W83 mobilizable transposon, int protein NP_905122.1 937000 R 242619 CDS NP_905123.1 34540644 2552904 complement(938192..939094) 1 NC_002950.2 similar to GB:L32019, and PID:474892; identified by sequence similarity; putative; mobilizable transposon, TnpA protein 939094 2552904 PG0875 Porphyromonas gingivalis W83 mobilizable transposon, TnpA protein NP_905123.1 938192 R 242619 CDS NP_905124.1 34540645 2552901 complement(939340..940896) 1 NC_002950.2 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 940896 trmE 2552901 trmE Porphyromonas gingivalis W83 tRNA modification GTPase TrmE NP_905124.1 939340 R 242619 CDS NP_905125.1 34540646 2552906 complement(940928..941635) 1 NC_002950.2 hypothetical protein 941635 2552906 PG0877 Porphyromonas gingivalis W83 hypothetical protein NP_905125.1 940928 R 242619 CDS NP_905126.1 34540647 2552907 complement(942021..942626) 1 NC_002950.2 hypothetical protein 942626 2552907 PG0879 Porphyromonas gingivalis W83 hypothetical protein NP_905126.1 942021 R 242619 CDS NP_905127.1 34540648 2552910 942679..943182 1 NC_002950.2 similar to GB:L19338, SP:P37926, PID:349136, GB:M26665, GB:M18372, GB:L05514, SP:P15515, SP:P15516, PID:179466, PID:184058, and PID:292146; identified by sequence similarity; putative; bacterioferritin comigratory protein 943182 bcp 2552910 bcp Porphyromonas gingivalis W83 bacterioferritin comigratory protein NP_905127.1 942679 D 242619 CDS NP_905128.1 34540649 2552911 943203..944225 1 NC_002950.2 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 944225 recA 2552911 recA Porphyromonas gingivalis W83 recombinase A NP_905128.1 943203 D 242619 CDS NP_905129.1 34540650 2552912 944335..945264 1 NC_002950.2 hypothetical protein 945264 2552912 PG0882 Porphyromonas gingivalis W83 hypothetical protein NP_905129.1 944335 D 242619 CDS NP_905130.1 34540651 2552903 945261..946622 1 NC_002950.2 hypothetical protein 946622 2552903 PG0883 Porphyromonas gingivalis W83 hypothetical protein NP_905130.1 945261 D 242619 CDS NP_905131.1 34540652 2552915 946619..947869 1 NC_002950.2 hypothetical protein 947869 2552915 PG0884 Porphyromonas gingivalis W83 hypothetical protein NP_905131.1 946619 D 242619 CDS NP_905132.1 34540653 2552917 947885..948985 1 NC_002950.2 similar to GB:Z21507, SP:P29692, and PID:38522; identified by sequence similarity; putative; phospho-2-dehydro-3-deoxyheptonate aldolase 948985 2552917 PG0885 Porphyromonas gingivalis W83 phospho-2-dehydro-3-deoxyheptonate aldolase NP_905132.1 947885 D 242619 CDS NP_905133.1 34540654 2552916 948982..949746 1 NC_002950.2 hypothetical protein 949746 2552916 PG0886 Porphyromonas gingivalis W83 hypothetical protein NP_905133.1 948982 D 242619 CDS NP_905134.1 34540655 2552914 950050..950181 1 NC_002950.2 hypothetical protein 950181 2552914 PG0888 Porphyromonas gingivalis W83 hypothetical protein NP_905134.1 950050 D 242619 CDS NP_905135.1 34540656 2552926 950240..951436 1 NC_002950.2 M24 family peptidase 951436 2552926 PG0889 Porphyromonas gingivalis W83 M24 family peptidase NP_905135.1 950240 D 242619 CDS NP_905136.1 34540657 2552918 951472..953163 1 NC_002950.2 alkaline phosphatase 953163 2552918 PG0890 Porphyromonas gingivalis W83 alkaline phosphatase NP_905136.1 951472 D 242619 CDS NP_905137.2 161579530 2552921 complement(954291..955931) 1 NC_002950.2 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 955931 2552921 PG0893 Porphyromonas gingivalis W83 hydroxylamine reductase NP_905137.2 954291 R 242619 CDS NP_905138.1 34540659 2552924 complement(956168..956851) 1 NC_002950.2 similar to GB:U05670; identified by sequence similarity; putative; DNA repair protein RadC 956851 radC 2552924 radC Porphyromonas gingivalis W83 DNA repair protein RadC NP_905138.1 956168 R 242619 CDS NP_905139.1 34540660 2552047 957389..960442 1 NC_002950.2 beta-galactosidase 960442 lacZ-2 2552047 lacZ-2 Porphyromonas gingivalis W83 beta-galactosidase NP_905139.1 957389 D 242619 CDS NP_905140.1 34540661 2552045 complement(960958..962562) 1 NC_002950.2 alpha-amylase 962562 2552045 PG0897 Porphyromonas gingivalis W83 alpha-amylase NP_905140.1 960958 R 242619 CDS NP_905141.1 34540662 2552048 complement(962649..963440) 1 NC_002950.2 similar to GB:D10483, SP:P06137, GB:K02668, GB:M36531, GB:X02821, PID:146025, PID:146032, PID:216508, PID:40862, PID:41494, GB:U00096, PID:1786282, GB:D10483, SP:P06137, GB:K02668, GB:M36531, GB:X02821, PID:146025, PID:146032, PID:216508, PID:40862, PID:41494, GB:U00096, and PID:1786282; identified by sequence similarity; putative; hypothetical protein 963440 2552048 PG0898 Porphyromonas gingivalis W83 hypothetical protein NP_905141.1 962649 R 242619 CDS NP_905142.1 34540663 2552050 complement(963587..964750) 1 NC_002950.2 similar to GB:X59066, GB:X65460, GB:D28126, GB:D14710, SP:P25705, PID:28938, PID:34468, PID:559317, and PID:559325; identified by sequence similarity; putative; cytochrome d ubiquinol oxidase subunit II 964750 cydB 2552050 cydB Porphyromonas gingivalis W83 cytochrome d ubiquinol oxidase subunit II NP_905142.1 963587 R 242619 CDS NP_905143.1 34540664 2552052 complement(964796..966379) 1 NC_002950.2 similar to SP:P11697; identified by sequence similarity; putative; cytochrome d ubiquinol oxidase subunit I 966379 cydA 2552052 cydA Porphyromonas gingivalis W83 cytochrome d ubiquinol oxidase subunit I NP_905143.1 964796 R 242619 CDS NP_905144.1 34540665 2552053 complement(966405..966653) 1 NC_002950.2 hypothetical protein 966653 2552053 PG0901 Porphyromonas gingivalis W83 hypothetical protein NP_905144.1 966405 R 242619 CDS NP_905145.1 34540666 2552055 complement(966836..969061) 1 NC_002950.2 alpha-1,2-mannosidase 969061 2552055 PG0902 Porphyromonas gingivalis W83 alpha-1,2-mannosidase NP_905145.1 966836 R 242619 CDS NP_905146.1 34540667 2552057 complement(969188..969730) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00286; hypothetical protein 969730 2552057 PG0903 Porphyromonas gingivalis W83 hypothetical protein NP_905146.1 969188 R 242619 CDS NP_905147.1 34540668 2552059 970756..971208 1 NC_002950.2 putative lipoprotein 971208 2552059 PG0906 Porphyromonas gingivalis W83 putative lipoprotein NP_905147.1 970756 D 242619 CDS NP_905148.1 34540669 2552060 complement(971320..971811) 1 NC_002950.2 identified by match to PFAM protein family HMM PF03167; G/U mismatch-specific DNA glycosylase 971811 2552060 PG0908 Porphyromonas gingivalis W83 G/U mismatch-specific DNA glycosylase NP_905148.1 971320 R 242619 CDS NP_905149.1 34540670 2552061 complement(971828..973129) 1 NC_002950.2 hypothetical protein 973129 2552061 PG0909 Porphyromonas gingivalis W83 hypothetical protein NP_905149.1 971828 R 242619 CDS NP_905150.1 34540671 2552062 complement(973184..973756) 1 NC_002950.2 FHA domain-containing protein 973756 2552062 PG0910 Porphyromonas gingivalis W83 FHA domain-containing protein NP_905150.1 973184 R 242619 CDS NP_905151.1 34540672 2552065 complement(973881..975446) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; polysaccharide transport protein 975446 2552065 PG0912 Porphyromonas gingivalis W83 polysaccharide transport protein NP_905151.1 973881 R 242619 CDS NP_905152.1 34540673 2552064 complement(975794..976507) 1 NC_002950.2 hypothetical protein 976507 2552064 PG0914 Porphyromonas gingivalis W83 hypothetical protein NP_905152.1 975794 R 242619 CDS NP_905153.1 34540674 2552066 976725..977117 1 NC_002950.2 hypothetical protein 977117 2552066 PG0915 Porphyromonas gingivalis W83 hypothetical protein NP_905153.1 976725 D 242619 CDS NP_905154.1 34540675 2552933 complement(977792..978187) 1 NC_002950.2 similar to SP:P03064, PID:1045524, PID:151680, PID:501832, PID:1053000, SP:P26295, and GB:X17241; identified by sequence similarity; putative; GtrA family protein 978187 2552933 PG0917 Porphyromonas gingivalis W83 GtrA family protein NP_905154.1 977792 R 242619 CDS NP_905155.1 34540676 2552927 complement(978153..978908) 1 NC_002950.2 hypothetical protein 978908 2552927 PG0918 Porphyromonas gingivalis W83 hypothetical protein NP_905155.1 978153 R 242619 CDS NP_905156.1 34540677 2552925 complement(979075..980424) 1 NC_002950.2 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 980424 pyrC 2552925 pyrC Porphyromonas gingivalis W83 dihydroorotase NP_905156.1 979075 R 242619 CDS NP_905157.1 34540678 2552929 complement(980435..981115) 1 NC_002950.2 glycosyl transferase group 2 family protein 981115 2552929 PG0920 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_905157.1 980435 R 242619 CDS NP_905158.1 34540679 2552930 complement(981318..982541) 1 NC_002950.2 hypothetical protein 982541 2552930 PG0922 Porphyromonas gingivalis W83 hypothetical protein NP_905158.1 981318 R 242619 CDS NP_905159.1 34540680 2552932 complement(982569..982904) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00082; ribosome-binding factor A 982904 rbfA 2552932 rbfA Porphyromonas gingivalis W83 ribosome-binding factor A NP_905159.1 982569 R 242619 CDS NP_905160.1 34540681 2552936 complement(982943..983758) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01680; 5'-nucleotidase 983758 2552936 PG0924 Porphyromonas gingivalis W83 5'-nucleotidase NP_905160.1 982943 R 242619 CDS NP_905161.1 34540682 2552938 complement(983755..984369) 1 NC_002950.2 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 984369 tmk 2552938 tmk Porphyromonas gingivalis W83 thymidine kinase NP_905161.1 983755 R 242619 CDS NP_905162.1 34540683 2552939 complement(984497..984724) 1 NC_002950.2 hypothetical protein 984724 2552939 PG0926 Porphyromonas gingivalis W83 hypothetical protein NP_905162.1 984497 R 242619 CDS NP_905163.1 34540684 2552943 complement(984724..985140) 1 NC_002950.2 hypothetical protein 985140 2552943 PG0927 Porphyromonas gingivalis W83 hypothetical protein NP_905163.1 984724 R 242619 CDS NP_905164.1 34540685 2552944 complement(985152..986708) 1 NC_002950.2 response regulator 986708 2552944 PG0928 Porphyromonas gingivalis W83 response regulator NP_905164.1 985152 R 242619 CDS NP_905165.1 34540686 2552945 complement(986757..987239) 1 NC_002950.2 hypothetical protein 987239 2552945 PG0929 Porphyromonas gingivalis W83 hypothetical protein NP_905165.1 986757 R 242619 CDS NP_905166.1 34540687 2552937 complement(987243..987632) 1 NC_002950.2 hypothetical protein 987632 2552937 PG0930 Porphyromonas gingivalis W83 hypothetical protein NP_905166.1 987243 R 242619 CDS NP_905167.1 34540688 2552948 988643..989893 1 NC_002950.2 DNA polymerase III, delta prime subunit 989893 2552948 PG0932 Porphyromonas gingivalis W83 DNA polymerase III, delta prime subunit NP_905167.1 988643 D 242619 CDS NP_905168.1 34540689 2552946 990137..992296 1 NC_002950.2 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 992296 2552946 PG0933 Porphyromonas gingivalis W83 elongation factor G NP_905168.1 990137 D 242619 CDS NP_905169.1 34540690 2552942 complement(992504..994408) 1 NC_002950.2 hypothetical protein 994408 2552942 PG0934 Porphyromonas gingivalis W83 hypothetical protein NP_905169.1 992504 R 242619 CDS NP_905170.1 34540691 2552951 complement(994387..995211) 1 NC_002950.2 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 995211 ispE 2552951 ispE Porphyromonas gingivalis W83 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase NP_905170.1 994387 R 242619 CDS NP_905171.1 34540692 2552950 complement(995240..996541) 1 NC_002950.2 xanthine/uracil permease 996541 2552950 PG0936 Porphyromonas gingivalis W83 xanthine/uracil permease NP_905171.1 995240 R 242619 CDS NP_905172.1 34540693 2552953 complement(996562..997284) 1 NC_002950.2 hypothetical protein 997284 2552953 PG0937 Porphyromonas gingivalis W83 hypothetical protein NP_905172.1 996562 R 242619 CDS NP_905173.1 34540694 2552954 complement(997284..1000475) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01652; calcium-transporting ATPase 1000475 2552954 PG0938 Porphyromonas gingivalis W83 calcium-transporting ATPase NP_905173.1 997284 R 242619 CDS NP_905174.1 34540695 2552961 1002203..1002598 1 NC_002950.2 ISPg5, transposase Orf1 1002598 2552961 PG0942 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_905174.1 1002203 D 242619 CDS NP_905175.1 34540696 2552962 1002652..1003590 1 NC_002950.2 identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 1003590 2552962 PG0943 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_905175.1 1002652 D 242619 CDS NP_905176.1 34540697 2552964 complement(1005194..1006522) 1 NC_002950.2 ABC transporter permease 1006522 2552964 PG0945 Porphyromonas gingivalis W83 ABC transporter permease NP_905176.1 1005194 R 242619 CDS NP_905177.1 34540698 2552963 complement(1006527..1007486) 1 NC_002950.2 ABC transporter ATP-binding protein 1007486 2552963 PG0946 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905177.1 1006527 R 242619 CDS NP_905178.1 34540699 2552966 complement(1007489..1007962) 1 NC_002950.2 identified by match to PFAM protein family HMM PF04313; hypothetical protein 1007962 2552966 PG0947 Porphyromonas gingivalis W83 hypothetical protein NP_905178.1 1007489 R 242619 CDS NP_905179.1 34540700 2552968 1008031..1008807 1 NC_002950.2 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1008807 2552968 PG0948 Porphyromonas gingivalis W83 AMP nucleosidase NP_905179.1 1008031 D 242619 CDS NP_905180.1 34540701 2552969 1008826..1009833 1 NC_002950.2 similar to GB:X59739, GB:X59738, GB:X59740, SP:P08048, SP:P17010, PID:340434, PID:38020, PID:38022, and PID:38024; identified by sequence similarity; putative; hypothetical protein 1009833 2552969 PG0949 Porphyromonas gingivalis W83 hypothetical protein NP_905180.1 1008826 D 242619 CDS NP_905181.1 34540702 2552970 1010001..1010381 1 NC_002950.2 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1010381 gcvH 2552970 gcvH Porphyromonas gingivalis W83 glycine cleavage system protein H NP_905181.1 1010001 D 242619 CDS NP_905182.1 34540703 2552974 1010382..1010888 1 NC_002950.2 similar to GB:M77836, SP:P32322, and PID:189498; identified by sequence similarity; putative; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE 1010888 purE 2552974 purE Porphyromonas gingivalis W83 phosphoribosylaminoimidazole carboxylase catalytic subunit PurE NP_905182.1 1010382 D 242619 CDS NP_905183.1 34540704 2552973 1011062..1012807 1 NC_002950.2 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1012807 ispG 2552973 ispG Porphyromonas gingivalis W83 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase NP_905183.1 1011062 D 242619 CDS NP_905184.1 34540705 2552975 1012864..1013298 1 NC_002950.2 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1013298 dut 2552975 dut Porphyromonas gingivalis W83 deoxyuridine 5'-triphosphate nucleotidohydrolase NP_905184.1 1012864 D 242619 CDS NP_905185.1 34540706 2552977 1013326..1015065 1 NC_002950.2 similar to GB:L12710, and PID:414576; identified by sequence similarity; putative; hypothetical protein 1015065 2552977 PG0954 Porphyromonas gingivalis W83 hypothetical protein NP_905185.1 1013326 D 242619 CDS NP_905186.1 34540707 2552979 1014972..1015925 1 NC_002950.2 hypothetical protein 1015925 2552979 PG0955 Porphyromonas gingivalis W83 hypothetical protein NP_905186.1 1014972 D 242619 CDS NP_905187.1 34540708 2552982 1015937..1017232 1 NC_002950.2 similar to GB:L10678, SP:P35080, and PID:190388; identified by sequence similarity; putative; M24/M37 family peptidase 1017232 2552982 PG0956 Porphyromonas gingivalis W83 M24/M37 family peptidase NP_905187.1 1015937 D 242619 CDS NP_905188.1 34540709 2552983 1017220..1018191 1 NC_002950.2 riboflavin biosynthesis protein RibF 1018191 ribF 2552983 ribF Porphyromonas gingivalis W83 riboflavin biosynthesis protein RibF NP_905188.1 1017220 D 242619 CDS NP_905189.1 34540710 2552984 complement(1018225..1019460) 1 NC_002950.2 ribonuclease BN 1019460 2552984 PG0958 Porphyromonas gingivalis W83 ribonuclease BN NP_905189.1 1018225 R 242619 CDS NP_905190.1 34540711 2552986 complement(1020113..1021231) 1 NC_002950.2 similar to GB:M22488, GB:L35279, GB:L35278, SP:P13497, and PID:619424; identified by sequence similarity; putative; ATP-binding Mrp/Nbp35 family protein 1021231 mrp 2552986 mrp Porphyromonas gingivalis W83 ATP-binding Mrp/Nbp35 family protein NP_905190.1 1020113 R 242619 CDS NP_905191.1 34540712 2552988 complement(1021251..1021985) 1 NC_002950.2 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1021985 trmB 2552988 trmB Porphyromonas gingivalis W83 tRNA (guanine-N(7)-)-methyltransferase NP_905191.1 1021251 R 242619 CDS NP_905192.1 34540713 2552978 complement(1022033..1022362) 1 NC_002950.2 hypothetical protein 1022362 2552978 PG0961 Porphyromonas gingivalis W83 hypothetical protein NP_905192.1 1022033 R 242619 CDS NP_905193.1 34540714 2552990 complement(1022417..1023898) 1 NC_002950.2 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1023898 proS 2552990 proS Porphyromonas gingivalis W83 prolyl-tRNA synthetase NP_905193.1 1022417 R 242619 CDS NP_905194.1 34540715 2552992 complement(1024177..1024422) 1 NC_002950.2 hypothetical protein 1024422 2552992 PG0963 Porphyromonas gingivalis W83 hypothetical protein NP_905194.1 1024177 R 242619 CDS NP_905195.1 34540716 2552993 complement(1025201..1025866) 1 NC_002950.2 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1025866 2552993 PG0965 Porphyromonas gingivalis W83 phosphatidylserine decarboxylase NP_905195.1 1025201 R 242619 CDS NP_905196.1 34540717 2552997 1026968..1027885 1 NC_002950.2 similar to GB:M55249, SP:P21319, PID:145154, GB:M22404, and PID:188866; identified by sequence similarity; putative; Mrr restriction system protein 1027885 mrr 2552997 mrr Porphyromonas gingivalis W83 Mrr restriction system protein NP_905196.1 1026968 D 242619 CDS NP_905197.1 34540718 2553000 complement(1028291..1029508) 1 NC_002950.2 similar to GB:X12534, SP:P10114, PID:35861, and PID:412184; identified by sequence similarity; putative; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1029508 2553000 PG0969 Porphyromonas gingivalis W83 S-adenosylmethionine--tRNA ribosyltransferase-isomerase NP_905197.1 1028291 R 242619 CDS NP_905198.1 34540719 2553002 1029746..1030903 1 NC_002950.2 ISPg4, transposase 1030903 2553002 PG0970 Porphyromonas gingivalis W83 ISPg4, transposase NP_905198.1 1029746 D 242619 CDS NP_905199.1 34540720 2553003 1031086..1032801 1 NC_002950.2 McrBC restriction endonuclease system, McrB subunit 1032801 2553003 PG0971 Porphyromonas gingivalis W83 McrBC restriction endonuclease system, McrB subunit NP_905199.1 1031086 D 242619 CDS NP_905200.1 34540721 2553004 1032808..1034103 1 NC_002950.2 hypothetical protein 1034103 2553004 PG0972 Porphyromonas gingivalis W83 hypothetical protein NP_905200.1 1032808 D 242619 CDS NP_905201.1 34540722 2552076 1034307..1036622 1 NC_002950.2 alpha-1,2-mannosidase 1036622 2552076 PG0973 Porphyromonas gingivalis W83 alpha-1,2-mannosidase NP_905201.1 1034307 D 242619 CDS NP_905202.1 34540723 2552078 1037424..1038416 1 NC_002950.2 similar to GB:J02906, SP:P24903, and PID:181358; identified by sequence similarity; putative; PhoH family protein 1038416 2552078 PG0975 Porphyromonas gingivalis W83 PhoH family protein NP_905202.1 1037424 D 242619 CDS NP_905203.1 34540724 2552082 1038466..1039407 1 NC_002950.2 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1039407 hemH 2552082 hemH Porphyromonas gingivalis W83 phosphoribosylaminoimidazole-succinocarboxamide synthase NP_905203.1 1038466 D 242619 CDS NP_905204.1 34540725 2552085 1039439..1040176 1 NC_002950.2 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1040176 ubiE 2552085 ubiE Porphyromonas gingivalis W83 ubiquinone/menaquinone biosynthesis methyltransferase NP_905204.1 1039439 D 242619 CDS NP_905205.1 34540726 2552086 1040173..1040922 1 NC_002950.2 similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; putative; shikimate 5-dehydrogenase 1040922 aroE 2552086 aroE Porphyromonas gingivalis W83 shikimate 5-dehydrogenase NP_905205.1 1040173 D 242619 CDS NP_905206.1 34540727 2552087 1040892..1041050 1 NC_002950.2 hypothetical protein 1041050 2552087 PG0979 Porphyromonas gingivalis W83 hypothetical protein NP_905206.1 1040892 D 242619 CDS NP_905207.1 34540728 2552089 1041037..1043274 1 NC_002950.2 hypothetical protein 1043274 2552089 PG0980 Porphyromonas gingivalis W83 hypothetical protein NP_905207.1 1041037 D 242619 CDS NP_905208.1 34540729 2552092 1044450..1046702 1 NC_002950.2 hypothetical protein 1046702 2552092 PG0982 Porphyromonas gingivalis W83 hypothetical protein NP_905208.1 1044450 D 242619 CDS NP_905209.1 34540730 2552094 complement(1046803..1047009) 1 NC_002950.2 hypothetical protein 1047009 2552094 PG0984 Porphyromonas gingivalis W83 hypothetical protein NP_905209.1 1046803 R 242619 CDS NP_905210.1 34540731 2552070 1047070..1047576 1 NC_002950.2 similar to GB:L10064, SP:Q05071, and PID:153365; identified by sequence similarity; putative; ECF subfamily RNA polymerase sigma factor 1047576 2552070 PG0985 Porphyromonas gingivalis W83 ECF subfamily RNA polymerase sigma factor NP_905210.1 1047070 D 242619 CDS NP_905211.1 34540732 2552998 1047566..1048126 1 NC_002950.2 hypothetical protein 1048126 2552998 PG0986 Porphyromonas gingivalis W83 hypothetical protein NP_905211.1 1047566 D 242619 CDS NP_905212.1 34540733 2553008 1048142..1048918 1 NC_002950.2 hypothetical protein 1048918 2553008 PG0987 Porphyromonas gingivalis W83 hypothetical protein NP_905212.1 1048142 D 242619 CDS NP_905213.1 34540734 2553014 complement(1050789..1051136) 1 NC_002950.2 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1051136 rplT 2553014 rplT Porphyromonas gingivalis W83 50S ribosomal protein L20 NP_905213.1 1050789 R 242619 CDS NP_905214.1 34540735 2553015 complement(1051249..1051446) 1 NC_002950.2 similar to GB:X59964, SP:P28325, PID:30264, and PID:398711; identified by sequence similarity; putative; 50S ribosomal protein L35 1051446 rpmI 2553015 rpmI Porphyromonas gingivalis W83 50S ribosomal protein L35 NP_905214.1 1051249 R 242619 CDS NP_905215.1 34540736 2553017 complement(1051524..1052129) 1 NC_002950.2 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 1052129 infC 2553017 infC Porphyromonas gingivalis W83 translation initiation factor IF-3 NP_905215.1 1051524 R 242619 CDS NP_905216.1 34540737 2553018 complement(1052233..1054194) 1 NC_002950.2 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1054194 thrS 2553018 thrS Porphyromonas gingivalis W83 threonyl-tRNA synthetase NP_905216.1 1052233 R 242619 CDS NP_905217.1 34540738 2553019 1055061..1055159 1 NC_002950.2 hypothetical protein 1055159 2553019 PG0994 Porphyromonas gingivalis W83 hypothetical protein NP_905217.1 1055061 D 242619 CDS NP_905218.1 34540739 2553020 complement(1055559..1055675) 1 NC_002950.2 hypothetical protein 1055675 2553020 PG0995 Porphyromonas gingivalis W83 hypothetical protein NP_905218.1 1055559 R 242619 CDS NP_905219.1 34540740 2553022 1055732..1056640 1 NC_002950.2 hypothetical protein 1056640 2553022 PG0996 Porphyromonas gingivalis W83 hypothetical protein NP_905219.1 1055732 D 242619 CDS NP_905220.1 34540741 2553024 1056806..1057072 1 NC_002950.2 identified by match to PFAM protein family HMM PF01381; transcriptional regulator 1057072 2553024 PG0997 Porphyromonas gingivalis W83 transcriptional regulator NP_905220.1 1056806 D 242619 CDS NP_905221.1 34540742 2553027 1057069..1057164 1 NC_002950.2 hypothetical protein 1057164 2553027 PG0998 Porphyromonas gingivalis W83 hypothetical protein NP_905221.1 1057069 D 242619 CDS NP_905222.1 34540743 2553026 1057166..1057711 1 NC_002950.2 hypothetical protein 1057711 2553026 PG0999 Porphyromonas gingivalis W83 hypothetical protein NP_905222.1 1057166 D 242619 CDS NP_905223.1 34540744 2553007 1057734..1058366 1 NC_002950.2 hypothetical protein 1058366 2553007 PG1000 Porphyromonas gingivalis W83 hypothetical protein NP_905223.1 1057734 D 242619 CDS NP_905224.1 34540745 2553031 1058370..1058906 1 NC_002950.2 similar to GP:19714875, and SP:P38059; identified by sequence similarity; putative; hypothetical protein 1058906 2553031 PG1001 Porphyromonas gingivalis W83 hypothetical protein NP_905224.1 1058370 D 242619 CDS NP_905225.1 34540746 2553033 1058911..1059297 1 NC_002950.2 hypothetical protein 1059297 2553033 PG1002 Porphyromonas gingivalis W83 hypothetical protein NP_905225.1 1058911 D 242619 CDS NP_905226.1 34540747 2553030 1059372..1060364 1 NC_002950.2 hypothetical protein 1060364 2553030 PG1003 Porphyromonas gingivalis W83 hypothetical protein NP_905226.1 1059372 D 242619 CDS NP_905227.1 34540748 2553035 complement(1060523..1062802) 1 NC_002950.2 similar to SP:P38372, PID:484252, and PID:2160219; identified by sequence similarity; putative; prolyl oligopeptidase 1062802 2553035 PG1004 Porphyromonas gingivalis W83 prolyl oligopeptidase NP_905227.1 1060523 R 242619 CDS NP_905228.1 34540749 2553034 complement(1063113..1063853) 1 NC_002950.2 putative lipoprotein 1063853 2553034 PG1005 Porphyromonas gingivalis W83 putative lipoprotein NP_905228.1 1063113 R 242619 CDS NP_905229.1 34540750 2553038 complement(1063884..1066568) 1 NC_002950.2 hypothetical protein 1066568 2553038 PG1006 Porphyromonas gingivalis W83 hypothetical protein NP_905229.1 1063884 R 242619 CDS NP_905230.1 34540751 2553039 complement(1066608..1066979) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01726; GntR family transcriptional regulator 1066979 2553039 PG1007 Porphyromonas gingivalis W83 GntR family transcriptional regulator NP_905230.1 1066608 R 242619 CDS NP_905231.1 34540752 2553040 complement(1066976..1067734) 1 NC_002950.2 hypothetical protein 1067734 2553040 PG1008 Porphyromonas gingivalis W83 hypothetical protein NP_905231.1 1066976 R 242619 CDS NP_905232.1 34540753 2553041 complement(1067731..1068585) 1 NC_002950.2 hypothetical protein 1068585 2553041 PG1009 Porphyromonas gingivalis W83 hypothetical protein NP_905232.1 1067731 R 242619 CDS NP_905233.1 34540754 2553044 complement(1068599..1069426) 1 NC_002950.2 similar to SP:P00632; identified by sequence similarity; putative; ABC transporter ATP-binding protein 1069426 2553044 PG1010 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905233.1 1068599 R 242619 CDS NP_905234.1 34540755 2553046 complement(1070179..1071570) 1 NC_002950.2 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1071570 2553046 PG1012 Porphyromonas gingivalis W83 (dimethylallyl)adenosine tRNA methylthiotransferase NP_905234.1 1070179 R 242619 CDS NP_905235.1 34540756 2553045 1071874..1073370 1 NC_002950.2 similar to GB:Z14982, GB:X62598, GB:X66401, GB:U17496, GB:U17497, GB:U32863, SP:P28062, PID:1045469, PID:1045471, PID:1054747, PID:38482, PID:596140, and PID:596142; identified by sequence similarity; putative; acetyl-CoA hydrolase/transferase 1073370 2553045 PG1013 Porphyromonas gingivalis W83 acetyl-CoA hydrolase/transferase NP_905235.1 1071874 D 242619 CDS NP_905236.1 34540757 2553047 1073903..1075915 1 NC_002950.2 hypothetical protein 1075915 2553047 PG1014 Porphyromonas gingivalis W83 hypothetical protein NP_905236.1 1073903 D 242619 CDS NP_905237.1 34540758 2553048 complement(1075967..1076110) 1 NC_002950.2 hypothetical protein 1076110 2553048 PG1015 Porphyromonas gingivalis W83 hypothetical protein NP_905237.1 1075967 R 242619 CDS NP_905238.1 34540759 2553051 1076278..1079004 1 NC_002950.2 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1079004 ppdK 2553051 ppdK Porphyromonas gingivalis W83 pyruvate phosphate dikinase NP_905238.1 1076278 D 242619 CDS NP_905239.1 34540760 2553055 1079034..1079342 1 NC_002950.2 hypothetical protein 1079342 2553055 PG1018 Porphyromonas gingivalis W83 hypothetical protein NP_905239.1 1079034 D 242619 CDS NP_905240.1 34540761 2553053 1079355..1080536 1 NC_002950.2 putative lipoprotein 1080536 2553053 PG1019 Porphyromonas gingivalis W83 putative lipoprotein NP_905240.1 1079355 D 242619 CDS NP_905241.1 34540762 2553043 1080708..1083518 1 NC_002950.2 hypothetical protein 1083518 2553043 PG1020 Porphyromonas gingivalis W83 hypothetical protein NP_905241.1 1080708 D 242619 CDS NP_905242.1 34540763 2553059 complement(1083485..1083682) 1 NC_002950.2 hypothetical protein 1083682 2553059 PG1021 Porphyromonas gingivalis W83 hypothetical protein NP_905242.1 1083485 R 242619 CDS NP_905243.1 34540764 2553060 1083677..1085158 1 NC_002950.2 hypothetical protein 1085158 2553060 PG1022 Porphyromonas gingivalis W83 hypothetical protein NP_905243.1 1083677 D 242619 CDS NP_905244.1 34540765 2553063 1086838..1086936 1 NC_002950.2 hypothetical protein 1086936 2553063 PG1024 Porphyromonas gingivalis W83 hypothetical protein NP_905244.1 1086838 D 242619 CDS NP_905245.1 34540766 2553064 1087281..1088369 1 NC_002950.2 hypothetical protein 1088369 2553064 PG1025 Porphyromonas gingivalis W83 hypothetical protein NP_905245.1 1087281 D 242619 CDS NP_905246.1 34540767 2553062 1088317..1089048 1 NC_002950.2 hypothetical protein 1089048 2553062 PG1026 Porphyromonas gingivalis W83 hypothetical protein NP_905246.1 1088317 D 242619 CDS NP_905247.1 34540768 2553066 complement(1089287..1089529) 1 NC_002950.2 hypothetical protein 1089529 2553066 PG1027 Porphyromonas gingivalis W83 hypothetical protein NP_905247.1 1089287 R 242619 CDS NP_905248.1 34540769 2553067 1089810..1091156 1 NC_002950.2 hypothetical protein 1091156 2553067 PG1028 Porphyromonas gingivalis W83 hypothetical protein NP_905248.1 1089810 D 242619 CDS NP_905249.1 34540770 2553071 1091220..1091396 1 NC_002950.2 hypothetical protein 1091396 2553071 PG1029 Porphyromonas gingivalis W83 hypothetical protein NP_905249.1 1091220 D 242619 CDS NP_905250.1 34540771 2553072 1091540..1092880 1 NC_002950.2 hypothetical protein 1092880 2553072 PG1030 Porphyromonas gingivalis W83 hypothetical protein NP_905250.1 1091540 D 242619 CDS NP_905251.1 34540772 2553074 complement(1093171..1094256) 1 NC_002950.2 ISPg1, transposase 1094256 2553074 PG1031 Porphyromonas gingivalis W83 ISPg1, transposase NP_905251.1 1093171 R 242619 CDS NP_905252.1 34540773 2553061 1094473..1095375 1 NC_002950.2 ISPg3, transposase 1095375 2553061 PG1032 Porphyromonas gingivalis W83 ISPg3, transposase NP_905252.1 1094473 D 242619 CDS NP_905253.1 34540774 2553078 1095538..1096284 1 NC_002950.2 similar to GB:L11998, PID:310609, PID:405561, GB:L11998, PID:310609, and PID:405561; identified by sequence similarity; putative; hypothetical protein 1096284 2553078 PG1033 Porphyromonas gingivalis W83 hypothetical protein NP_905253.1 1095538 D 242619 CDS NP_905254.1 34540775 2553080 1096303..1097037 1 NC_002950.2 similar to GB:D14694, SP:P48651, and PID:603802; identified by sequence similarity; putative; ABC transporter ATP-binding protein 1097037 2553080 PG1034 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905254.1 1096303 D 242619 CDS NP_905255.1 34540776 2553082 1097015..1098505 1 NC_002950.2 hypothetical protein 1098505 2553082 PG1035 Porphyromonas gingivalis W83 hypothetical protein NP_905255.1 1097015 D 242619 CDS NP_905256.1 34540777 2553083 1098576..1101479 1 NC_002950.2 similar to GB:X52520, GB:X52509, SP:P17735, PID:1217965, PID:36713, and PID:37502; identified by sequence similarity; putative; excinuclease ABC subunit A 1101479 uvrA-1 2553083 uvrA-1 Porphyromonas gingivalis W83 excinuclease ABC subunit A NP_905256.1 1098576 D 242619 CDS NP_905257.1 34540778 2553084 1101505..1102884 1 NC_002950.2 hypothetical protein 1102884 2553084 PG1037 Porphyromonas gingivalis W83 hypothetical protein NP_905257.1 1101505 D 242619 CDS NP_905258.1 34540779 2553086 1102884..1105181 1 NC_002950.2 UvrD/PcrA/Rep family ATP-dependent DNA helicase 1105181 2553086 PG1038 Porphyromonas gingivalis W83 UvrD/PcrA/Rep family ATP-dependent DNA helicase NP_905258.1 1102884 D 242619 CDS NP_905259.1 34540780 2553088 complement(1105415..1107142) 1 NC_002950.2 hypothetical protein 1107142 2553088 PG1039 Porphyromonas gingivalis W83 hypothetical protein NP_905259.1 1105415 R 242619 CDS NP_905260.1 34540781 2553076 complement(1107575..1108039) 1 NC_002950.2 transcriptional regulator 1108039 2553076 PG1040 Porphyromonas gingivalis W83 transcriptional regulator NP_905260.1 1107575 R 242619 CDS NP_905261.1 34540782 2553089 complement(1108060..1109013) 1 NC_002950.2 K+-dependent Na+/Ca+ exchanger-like protein 1109013 2553089 PG1041 Porphyromonas gingivalis W83 K+-dependent Na+/Ca+ exchanger-like protein NP_905261.1 1108060 R 242619 CDS NP_905262.1 34540783 2553090 complement(1109082..1110728) 1 NC_002950.2 glycogen synthase 1110728 2553090 PG1042 Porphyromonas gingivalis W83 glycogen synthase NP_905262.1 1109082 R 242619 CDS NP_905263.1 34540784 2553093 complement(1110765..1112942) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; ferrous iron transport protein B 1112942 feoB-1 2553093 feoB-1 Porphyromonas gingivalis W83 ferrous iron transport protein B NP_905263.1 1110765 R 242619 CDS NP_905264.1 34540785 2553094 complement(1112976..1113908) 1 NC_002950.2 similar to GB:D16629, PID:416248, and PID:2189974; identified by sequence similarity; putative; iron dependent repressor 1113908 2553094 PG1044 Porphyromonas gingivalis W83 iron dependent repressor NP_905264.1 1112976 R 242619 CDS NP_905265.1 34540786 2553100 1115296..1116486 1 NC_002950.2 N-acetylmuramoyl-L-alanine amidase 1116486 2553100 PG1048 Porphyromonas gingivalis W83 N-acetylmuramoyl-L-alanine amidase NP_905265.1 1115296 D 242619 CDS NP_905266.1 34540787 2553104 1116527..1117405 1 NC_002950.2 hypothetical protein 1117405 2553104 PG1049 Porphyromonas gingivalis W83 hypothetical protein NP_905266.1 1116527 D 242619 CDS NP_905267.1 34540788 2553106 1117412..1118308 1 NC_002950.2 hypothetical protein 1118308 2553106 PG1050 Porphyromonas gingivalis W83 hypothetical protein NP_905267.1 1117412 D 242619 CDS NP_905268.1 34540789 2553105 1118350..1119765 1 NC_002950.2 hypothetical protein 1119765 2553105 PG1051 Porphyromonas gingivalis W83 hypothetical protein NP_905268.1 1118350 D 242619 CDS NP_905269.1 34540790 2553102 1119830..1120186 1 NC_002950.2 transcriptional regulator 1120186 2553102 PG1052 Porphyromonas gingivalis W83 transcriptional regulator NP_905269.1 1119830 D 242619 CDS NP_905270.1 34540791 2553107 1120205..1120891 1 NC_002950.2 similar to GB:J01600, SP:P00475, GB:V00272, GB:Z19601, PID:145706, PID:41227, PID:41230, PID:606321, GB:U00096, and PID:1789789; identified by sequence similarity; putative; transcriptional regulator 1120891 2553107 PG1053 Porphyromonas gingivalis W83 transcriptional regulator NP_905270.1 1120205 D 242619 CDS NP_905271.1 34540792 2553108 complement(1121292..1122737) 1 NC_002950.2 similar to GB:X56351, SP:P13196, PID:28583, GB:X56351, SP:P13196, and PID:28583; identified by sequence similarity; putative; thiol protease 1122737 tpr 2553108 tpr Porphyromonas gingivalis W83 thiol protease NP_905271.1 1121292 R 242619 CDS NP_905272.1 34540793 2551799 1123120..1123539 1 NC_002950.2 similar to GB:Z12296, PID:43338, GB:Z12296, and PID:43338; identified by sequence similarity; putative; hypothetical protein 1123539 2551799 PG1056 Porphyromonas gingivalis W83 hypothetical protein NP_905272.1 1123120 D 242619 CDS NP_905273.1 34540794 2553109 1123559..1124152 1 NC_002950.2 identified by match to PFAM protein family HMM PF04055; hypothetical protein 1124152 2553109 PG1057 Porphyromonas gingivalis W83 hypothetical protein NP_905273.1 1123559 D 242619 CDS NP_905274.1 34540795 2553111 1124174..1126192 1 NC_002950.2 OmpA family protein 1126192 2553111 PG1058 Porphyromonas gingivalis W83 OmpA family protein NP_905274.1 1124174 D 242619 CDS NP_905275.1 34540796 2553110 complement(1126286..1126585) 1 NC_002950.2 hypothetical protein 1126585 2553110 PG1059 Porphyromonas gingivalis W83 hypothetical protein NP_905275.1 1126286 R 242619 CDS NP_905276.1 34540797 2553114 1126798..1128507 1 NC_002950.2 similar to GB:M60874, SP:P30959, and PID:152077; identified by sequence similarity; putative; carboxyl-terminal protease 1128507 2553114 PG1060 Porphyromonas gingivalis W83 carboxyl-terminal protease NP_905276.1 1126798 D 242619 CDS NP_905277.1 34540798 2553116 complement(1128820..1129908) 1 NC_002950.2 similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg6, transposase 1129908 2553116 PG1061 Porphyromonas gingivalis W83 ISPg6, transposase NP_905277.1 1128820 R 242619 CDS NP_905278.1 34540799 2553117 1131196..1131636 1 NC_002950.2 transcriptional regulator 1131636 2553117 PG1063 Porphyromonas gingivalis W83 transcriptional regulator NP_905278.1 1131196 D 242619 CDS NP_905279.1 34540800 2553119 1131688..1132485 1 NC_002950.2 similar to GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:Y00443, GB:M29706, GB:S68144, GB:M60331, SP:P04553, PID:1335010, PID:190454, PID:190528, PID:35686, PID:642459, and PID:; dihydroorotate dehydrogenase 1132485 2553119 PG1064 Porphyromonas gingivalis W83 dihydroorotate dehydrogenase NP_905279.1 1131688 D 242619 CDS NP_905280.1 34540801 2553121 1132467..1133390 1 NC_002950.2 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1133390 pyrD 2553121 pyrD Porphyromonas gingivalis W83 dihydroorotate dehydrogenase 1B NP_905280.1 1132467 D 242619 CDS NP_905281.1 34540802 2552103 1133661..1134305 1 NC_002950.2 similar to GB:M77232, GB:X67309, GB:J03537, SP:P10660, PID:307393, PID:337516, and PID:36148; identified by sequence similarity; putative; butyrate-acetoacetate CoA-transferase subunit A 1134305 ctfA 2552103 ctfA Porphyromonas gingivalis W83 butyrate-acetoacetate CoA-transferase subunit A NP_905281.1 1133661 D 242619 CDS NP_905282.1 34540803 2553207 1134359..1134748 1 NC_002950.2 similar to GP:19713115; identified by sequence similarity; putative; hypothetical protein 1134748 2553207 PG1067 Porphyromonas gingivalis W83 hypothetical protein NP_905282.1 1134359 D 242619 CDS NP_905283.1 34540804 2553202 1134776..1135597 1 NC_002950.2 similar to SP:P13685, GB:D26562, GB:M20574, GB:S48039, PID:147117, PID:259663, PID:473802, GB:U00096, and PID:1786336; identified by sequence similarity; putative; hypothetical protein 1135597 2553202 PG1068 Porphyromonas gingivalis W83 hypothetical protein NP_905283.1 1134776 D 242619 CDS NP_905284.1 34540805 2553208 1135639..1136682 1 NC_002950.2 zinc-containing alcohol dehydrogenase 1136682 2553208 PG1069 Porphyromonas gingivalis W83 zinc-containing alcohol dehydrogenase NP_905284.1 1135639 D 242619 CDS NP_905285.1 34540806 2553203 1136769..1138019 1 NC_002950.2 L-lysine 2,3-aminomutase 1138019 kamA 2553203 kamA Porphyromonas gingivalis W83 L-lysine 2,3-aminomutase NP_905285.1 1136769 D 242619 CDS NP_905286.1 34540807 2553205 1138148..1139116 1 NC_002950.2 similar to GP:19713109; identified by sequence similarity; putative; hypothetical protein 1139116 2553205 PG1071 Porphyromonas gingivalis W83 hypothetical protein NP_905286.1 1138148 D 242619 CDS NP_905287.1 34540808 2553210 1139116..1140507 1 NC_002950.2 similar to GB:S70527, GB:L37374, SP:P39748, GB:X76771, and PID:642090; identified by sequence similarity; putative; MutS family protein 1140507 2553210 PG1072 Porphyromonas gingivalis W83 MutS family protein NP_905287.1 1139116 D 242619 CDS NP_905288.1 34540809 2553370 1140535..1142106 1 NC_002950.2 D-lysine 5,6-aminomutase subunit alpha 1142106 kamD 2553370 kamD Porphyromonas gingivalis W83 D-lysine 5,6-aminomutase subunit alpha NP_905288.1 1140535 D 242619 CDS NP_905289.1 34540810 2553346 1142103..1142894 1 NC_002950.2 D-lysine 5,6-aminomutase subunit beta 1142894 kamE 2553346 kamE Porphyromonas gingivalis W83 D-lysine 5,6-aminomutase subunit beta NP_905289.1 1142103 D 242619 CDS NP_905290.1 34540811 2552189 1142918..1143580 1 NC_002950.2 coenzyme A transferase subunit beta 1143580 2552189 PG1075 Porphyromonas gingivalis W83 coenzyme A transferase subunit beta NP_905290.1 1142918 D 242619 CDS NP_905291.1 34540812 2553371 1143625..1144764 1 NC_002950.2 similar to GB:D26185, SP:P37497, PID:467350, GB:AL009126, GB:U07447, SP:P01621, SP:P01623, SP:P06311, SP:P18136, PID:470430, PID:470554, PID:470562, PID:470568, PID:470576, PID:470578, PID:470580, PID:470584, PID:470586, PID:470598, PID:470618, PID:511004, PID:553478, PID:560766, PID:561703, PID:587346, PID:587352, PID:619431, PID:619433, PID:619617, PID:619618, PID:619761, PID:619762, PID:619767, PID:619768, PID:619769, PID:681900, PID:695533, PID:695536, PID:722418, PID:722424, PID:722462, PID:722476, PID:722494, PID:722500, PID:722518, PID:722522, PID:722536, PID:722580, PID:722582, PID:722584, PID:722596, PID:732740, PID:860992, and PID:860998; identified by sequence similarity; putative; acyl-CoA dehydrogenase 1144764 acdA 2553371 acdA Porphyromonas gingivalis W83 acyl-CoA dehydrogenase NP_905291.1 1143625 D 242619 CDS NP_905292.1 34540813 2552174 1144779..1145564 1 NC_002950.2 similar to GB:U07447, SP:P01621, SP:P01623, SP:P06311, SP:P18136, PID:470430, PID:470554, PID:470562, PID:470568, PID:470576, PID:470578, PID:470580, PID:470584, PID:470586, PID:470598, PID:470618, PID:511004, PID:553478, PID:560766, PID:561703, PID:587346, PID:587352, PID:619431, PID:619433, PID:619617, PID:619618, PID:619761, PID:619762, PID:619767, PID:619768, PID:619769, PID:681900, PID:695533, PID:695536, PID:722418, PID:722424, PID:722462, PID:722476, PID:722494, PID:722500, PID:722518, PID:722522, PID:722536, PID:722580, PID:722582, PID:722584, PID:722596, PID:732740, PID:860992, and PID:860998; identified by sequence similarity; putative; electron transfer flavoprotein subunit beta 1145564 etfB-2 2552174 etfB-2 Porphyromonas gingivalis W83 electron transfer flavoprotein subunit beta NP_905292.1 1144779 D 242619 CDS NP_905293.1 34540814 2552180 1145578..1146585 1 NC_002950.2 similar to GB:U07447, SP:P01621, SP:P01623, SP:P06311, SP:P18136, PID:470430, PID:470554, PID:470562, PID:470568, PID:470576, PID:470578, PID:470580, PID:470584, PID:470586, PID:470598, PID:470618, PID:511004, PID:553478, PID:560766, PID:561703, PID:587346, PID:587352, PID:619431, PID:619433, PID:619617, PID:619618, PID:619761, PID:619762, PID:619767, PID:619768, PID:619769, PID:681900, PID:695533, PID:695536, PID:722418, PID:722424, PID:722462, PID:722476, PID:722494, PID:722500, PID:722518, PID:722522, PID:722536, PID:722580, PID:722582, PID:722584, PID:722596, PID:732740, PID:860992, and PID:860998; identified by sequence similarity; putative; electron transfer flavoprotein subunit alpha 1146585 etfA-2 2552180 etfA-2 Porphyromonas gingivalis W83 electron transfer flavoprotein subunit alpha NP_905293.1 1145578 D 242619 CDS NP_905294.1 34540815 2552181 1146689..1147459 1 NC_002950.2 similar to GB:X01563, SP:P02425, PID:42980, PID:606243, GB:U00096, and PID:1789705; identified by sequence similarity; putative; enoyl-CoA hydratase/isomerase 1147459 2552181 PG1079 Porphyromonas gingivalis W83 enoyl-CoA hydratase/isomerase NP_905294.1 1146689 D 242619 CDS NP_905295.1 34540816 2552179 1147506..1148351 1 NC_002950.2 similar to GB:D10653, GB:L10373, GB:D29808, SP:P41732, PID:285901, and PID:475006; identified by sequence similarity; putative; 3-hydroxyacyl-CoA dehydrogenase 1148351 2552179 PG1080 Porphyromonas gingivalis W83 3-hydroxyacyl-CoA dehydrogenase NP_905295.1 1147506 D 242619 CDS NP_905296.1 34540817 2552177 complement(1148521..1149717) 1 NC_002950.2 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1149717 ackA 2552177 ackA Porphyromonas gingivalis W83 acetate kinase NP_905296.1 1148521 R 242619 CDS NP_905297.1 34540818 2552173 complement(1149763..1150773) 1 NC_002950.2 similar to GB:U00039, SP:P28242, GB:X67639, PID:43280, PID:466632, GB:U00096, and PID:1789909; identified by sequence similarity; putative; phosphotransacetylase 1150773 pta 2552173 pta Porphyromonas gingivalis W83 phosphotransacetylase NP_905297.1 1149763 R 242619 CDS NP_905298.1 34540819 2553373 complement(1150983..1151924) 1 NC_002950.2 hypothetical protein 1151924 2553373 PG1083 Porphyromonas gingivalis W83 hypothetical protein NP_905298.1 1150983 R 242619 CDS NP_905299.1 34540820 2553357 complement(1151972..1153048) 1 NC_002950.2 thioredoxin family protein 1153048 2553357 PG1084 Porphyromonas gingivalis W83 thioredoxin family protein NP_905299.1 1151972 R 242619 CDS NP_905300.1 34540821 2553365 1153343..1153591 1 NC_002950.2 hypothetical protein 1153591 2553365 PG1085 Porphyromonas gingivalis W83 hypothetical protein NP_905300.1 1153343 D 242619 CDS NP_905301.1 34540822 2553362 1153945..1154880 1 NC_002950.2 similar to GB:U05888, PID:458314, and SP:Q45119; identified by sequence similarity; putative; radical SAM family protein 1154880 2553362 PG1087 Porphyromonas gingivalis W83 radical SAM family protein NP_905301.1 1153945 D 242619 CDS NP_905302.1 34540823 2553360 complement(1154932..1155516) 1 NC_002950.2 acetyltransferase 1155516 2553360 PG1088 Porphyromonas gingivalis W83 acetyltransferase NP_905302.1 1154932 R 242619 CDS NP_905303.1 34540824 2553358 complement(1155613..1156350) 1 NC_002950.2 similar to GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, PID:484051, GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, and PID:484051; identified by sequence similarity; putative; DNA-binding response regulator RprY 1156350 rprY 2553358 rprY Porphyromonas gingivalis W83 DNA-binding response regulator RprY NP_905303.1 1155613 R 242619 CDS NP_905304.1 34540825 2553359 1157157..1158152 1 NC_002950.2 similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; DHH subfamily 1 protein 1158152 2553359 PG1091 Porphyromonas gingivalis W83 DHH subfamily 1 protein NP_905304.1 1157157 D 242619 CDS NP_905305.1 34540826 2553353 1158261..1158839 1 NC_002950.2 hypothetical protein 1158839 2553353 PG1093 Porphyromonas gingivalis W83 hypothetical protein NP_905305.1 1158261 D 242619 CDS NP_905306.1 34540827 2553355 1158893..1160281 1 NC_002950.2 similar to SP:P00321; identified by sequence similarity; putative; phosphomannomutase 1160281 pgm 2553355 pgm Porphyromonas gingivalis W83 phosphomannomutase NP_905306.1 1158893 D 242619 CDS NP_905307.1 34540828 2553344 1160365..1161762 1 NC_002950.2 RNA methyltransferase 1161762 2553344 PG1095 Porphyromonas gingivalis W83 RNA methyltransferase NP_905307.1 1160365 D 242619 CDS NP_905308.1 34540829 2553352 1161979..1163061 1 NC_002950.2 hypothetical protein 1163061 2553352 PG1096 Porphyromonas gingivalis W83 hypothetical protein NP_905308.1 1161979 D 242619 CDS NP_905309.1 34540830 2553350 1163097..1165568 1 NC_002950.2 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase 1165568 2553350 PG1097 Porphyromonas gingivalis W83 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase NP_905309.1 1163097 D 242619 CDS NP_905310.1 34540831 2553349 complement(1165876..1167099) 1 NC_002950.2 hypothetical protein 1167099 2553349 PG1098 Porphyromonas gingivalis W83 hypothetical protein NP_905310.1 1165876 R 242619 CDS NP_905311.1 34540832 2553343 complement(1167434..1168258) 1 NC_002950.2 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 1168258 murQ 2553343 murQ Porphyromonas gingivalis W83 N-acetylmuramic acid 6-phosphate etherase NP_905311.1 1167434 R 242619 CDS NP_905312.1 34540833 2553337 complement(1168251..1169102) 1 NC_002950.2 hypothetical protein 1169102 2553337 PG1100 Porphyromonas gingivalis W83 hypothetical protein NP_905312.1 1168251 R 242619 CDS NP_905313.1 34540834 2553338 complement(1169099..1170559) 1 NC_002950.2 sodium:solute symporter family protein 1170559 2553338 PG1101 Porphyromonas gingivalis W83 sodium:solute symporter family protein NP_905313.1 1169099 R 242619 CDS NP_905314.1 34540835 2553332 complement(1170950..1173727) 1 NC_002950.2 hypothetical protein 1173727 2553332 PG1102 Porphyromonas gingivalis W83 hypothetical protein NP_905314.1 1170950 R 242619 CDS NP_905315.1 34540836 2553315 1173745..1175049 1 NC_002950.2 recombination factor protein RarA 1175049 2553315 PG1103 Porphyromonas gingivalis W83 recombination factor protein RarA NP_905315.1 1173745 D 242619 CDS NP_905316.1 34540837 2553335 1175075..1175842 1 NC_002950.2 similar to GB:L19999, GB:L19955, GB:X84654, GB:L15346, GB:U72196, SP:P50224, SP:P50225, SP:P50226, PID:1314740, PID:1575788, PID:179042, PID:1907312, PID:306455, PID:307343, PID:488285, PID:495487, PID:553649, PID:671534, PID:671642, PID:736379, PID:758595, PID:758597, PID:847763, PID:881503, and PID:881505; identified by sequence similarity; putative; hypothetical protein 1175842 2553335 PG1104 Porphyromonas gingivalis W83 hypothetical protein NP_905316.1 1175075 D 242619 CDS NP_905317.1 34540838 2553336 complement(1175806..1177263) 1 NC_002950.2 RNA polymerase sigma-54 factor 1177263 rpoN 2553336 rpoN Porphyromonas gingivalis W83 RNA polymerase sigma-54 factor NP_905317.1 1175806 R 242619 CDS NP_905318.1 34540839 2553321 complement(1177257..1178519) 1 NC_002950.2 similar to GB:X64229, SP:P35659, and PID:30503; identified by sequence similarity; putative; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1178519 murF 2553321 murF Porphyromonas gingivalis W83 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase NP_905318.1 1177257 R 242619 CDS NP_905319.1 34540840 2553334 1178900..1180309 1 NC_002950.2 hypothetical protein 1180309 2553334 PG1107 Porphyromonas gingivalis W83 hypothetical protein NP_905319.1 1178900 D 242619 CDS NP_905320.1 34540841 2553333 complement(1180797..1181198) 1 NC_002950.2 hypothetical protein 1181198 2553333 PG1108 Porphyromonas gingivalis W83 hypothetical protein NP_905320.1 1180797 R 242619 CDS NP_905321.1 34540842 2553329 complement(1181515..1182882) 1 NC_002950.2 mobilization protein 1182882 2553329 PG1109 Porphyromonas gingivalis W83 mobilization protein NP_905321.1 1181515 R 242619 CDS NP_905322.1 34540843 2553327 1182881..1183297 1 NC_002950.2 hypothetical protein 1183297 2553327 PG1110 Porphyromonas gingivalis W83 hypothetical protein NP_905322.1 1182881 D 242619 CDS NP_905323.1 34540844 2553323 1185143..1185631 1 NC_002950.2 hypothetical protein 1185631 2553323 PG1112 Porphyromonas gingivalis W83 hypothetical protein NP_905323.1 1185143 D 242619 CDS NP_905324.1 34540845 2553320 complement(1185613..1186836) 1 NC_002950.2 integrase 1186836 2553320 PG1113 Porphyromonas gingivalis W83 integrase NP_905324.1 1185613 R 242619 CDS NP_905325.1 34540846 2553319 1187177..1187533 1 NC_002950.2 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1187533 panD 2553319 panD Porphyromonas gingivalis W83 aspartate alpha-decarboxylase NP_905325.1 1187177 D 242619 CDS NP_905326.1 34540847 2553318 1187610..1188947 1 NC_002950.2 similar to GB:M82827, GB:X56058, SP:P29590, SP:P29591, SP:P29592, SP:P29593, SP:Q00755, and PID:182796; identified by sequence similarity; putative; signal recognition particle protein 1188947 ffh 2553318 ffh Porphyromonas gingivalis W83 signal recognition particle protein NP_905326.1 1187610 D 242619 CDS NP_905327.1 34540848 2553317 1189071..1189961 1 NC_002950.2 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1189961 folD 2553317 folD Porphyromonas gingivalis W83 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_905327.1 1189071 D 242619 CDS NP_905328.1 34540849 2553316 1190150..1191601 1 NC_002950.2 MATE efflux family protein 1191601 2553316 PG1117 Porphyromonas gingivalis W83 MATE efflux family protein NP_905328.1 1190150 D 242619 CDS NP_905329.1 34540850 2553313 complement(1192173..1194764) 1 NC_002950.2 clpB protein 1194764 clpB 2553313 clpB Porphyromonas gingivalis W83 clpB protein NP_905329.1 1192173 R 242619 CDS NP_905330.1 34540851 2553314 1194983..1195543 1 NC_002950.2 flavodoxin 1195543 2553314 PG1119 Porphyromonas gingivalis W83 flavodoxin NP_905330.1 1194983 D 242619 CDS NP_905331.1 34540852 2553310 complement(1196236..1197645) 1 NC_002950.2 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1197645 asnC 2553310 asnC Porphyromonas gingivalis W83 asparaginyl-tRNA synthetase NP_905331.1 1196236 R 242619 CDS NP_905332.1 34540853 2553308 complement(1199097..1200440) 1 NC_002950.2 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1200440 purB 2553308 purB Porphyromonas gingivalis W83 adenylosuccinate lyase NP_905332.1 1199097 R 242619 CDS NP_905333.1 34540854 2553309 complement(1200575..1201126) 1 NC_002950.2 ATP:cob(I)alamin adenosyltransferase 1201126 2553309 PG1124 Porphyromonas gingivalis W83 ATP:cob(I)alamin adenosyltransferase NP_905333.1 1200575 R 242619 CDS NP_905334.1 34540855 2553306 complement(1201161..1201817) 1 NC_002950.2 hypothetical protein 1201817 2553306 PG1125 Porphyromonas gingivalis W83 hypothetical protein NP_905334.1 1201161 R 242619 CDS NP_905335.1 34540856 2553378 complement(1201836..1203023) 1 NC_002950.2 uracil permease 1203023 uraA 2553378 uraA Porphyromonas gingivalis W83 uracil permease NP_905335.1 1201836 R 242619 CDS NP_905336.1 34540857 2553307 1203363..1203830 1 NC_002950.2 similar to GB:J03407, SP:P14373, PID:1903190, PID:337372, GB:X07282, SP:P10826, PID:184477, PID:32026, and PID:35883; identified by sequence similarity; putative; AsnC family transcriptional regulator 1203830 2553307 PG1127 Porphyromonas gingivalis W83 AsnC family transcriptional regulator NP_905336.1 1203363 D 242619 CDS NP_905337.1 34540858 2553330 1203877..1205259 1 NC_002950.2 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1205259 xseA 2553330 xseA Porphyromonas gingivalis W83 exodeoxyribonuclease VII large subunit NP_905337.1 1203877 D 242619 CDS NP_905338.1 34540859 2553305 1205538..1208090 1 NC_002950.2 similar to SP:P27298, GB:M93984, PID:451277, PID:466635, GB:U00096, PID:1789913, GB:M57894, SP:P29072, PID:142685, and GB:AL009126; identified by sequence similarity; putative; ribonucleotide reductase 1208090 nrd 2553305 nrd Porphyromonas gingivalis W83 ribonucleotide reductase NP_905338.1 1205538 D 242619 CDS NP_905339.1 34540860 2553115 1208193..1210190 1 NC_002950.2 hypothetical protein 1210190 2553115 PG1130 Porphyromonas gingivalis W83 hypothetical protein NP_905339.1 1208193 D 242619 CDS NP_905340.1 34540861 2552161 1211052..1213682 1 NC_002950.2 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1213682 valS 2552161 valS Porphyromonas gingivalis W83 valyl-tRNA synthetase NP_905340.1 1211052 D 242619 CDS NP_905341.1 34540862 2553193 1213711..1214163 1 NC_002950.2 hypothetical protein 1214163 2553193 PG1133 Porphyromonas gingivalis W83 hypothetical protein NP_905341.1 1213711 D 242619 CDS NP_905342.1 34540863 2552139 1214490..1215431 1 NC_002950.2 thioredoxin reductase 1215431 trxB 2552139 trxB Porphyromonas gingivalis W83 thioredoxin reductase NP_905342.1 1214490 D 242619 CDS NP_905343.1 34540864 2552141 1216000..1216614 1 NC_002950.2 identified by match to PFAM protein family HMM PF02397; sugar transferase 1216614 2552141 PG1135 Porphyromonas gingivalis W83 sugar transferase NP_905343.1 1216000 D 242619 CDS NP_905344.1 34540865 2552118 complement(1216789..1218417) 1 NC_002950.2 similar to GP:18892817; identified by sequence similarity; putative; hypothetical protein 1218417 2552118 PG1136 Porphyromonas gingivalis W83 hypothetical protein NP_905344.1 1216789 R 242619 CDS NP_905345.1 34540866 2553369 complement(1218380..1219687) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; porS protein 1219687 porS 2553369 porS Porphyromonas gingivalis W83 porS protein NP_905345.1 1218380 R 242619 CDS NP_905346.1 34540867 2553217 complement(1219684..1220838) 1 NC_002950.2 pigmentation and extracellular proteinase regulator 1220838 porR 2553217 porR Porphyromonas gingivalis W83 pigmentation and extracellular proteinase regulator NP_905346.1 1219684 R 242619 CDS NP_905347.1 34540868 2553368 complement(1221018..1222154) 1 NC_002950.2 hypothetical protein 1222154 2553368 PG1139 Porphyromonas gingivalis W83 hypothetical protein NP_905347.1 1221018 R 242619 CDS NP_905348.1 34540869 2552183 complement(1222265..1223125) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01556; glycosyl transferase group 2 family protein 1223125 2552183 PG1140 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_905348.1 1222265 R 242619 CDS NP_905349.1 34540870 2552168 complement(1223131..1224324) 1 NC_002950.2 glycosyl transferase 1224324 2552168 PG1141 Porphyromonas gingivalis W83 glycosyl transferase NP_905349.1 1223131 R 242619 CDS NP_905350.1 34540871 2553286 complement(1224661..1225569) 1 NC_002950.2 exopolysaccharide synthesis-like protein 1225569 2553286 PG1142 Porphyromonas gingivalis W83 exopolysaccharide synthesis-like protein NP_905350.1 1224661 R 242619 CDS NP_905351.1 34540872 2553294 complement(1225720..1227288) 1 NC_002950.2 sugar dehydrogenase 1227288 2553294 PG1143 Porphyromonas gingivalis W83 sugar dehydrogenase NP_905351.1 1225720 R 242619 CDS NP_905352.1 34540873 2553291 complement(1228572..1230395) 1 NC_002950.2 similar to GB:Z25430, and PID:405739; identified by sequence similarity; putative; long-chain-fatty-acid--CoA ligase 1230395 2553291 PG1145 Porphyromonas gingivalis W83 long-chain-fatty-acid--CoA ligase NP_905352.1 1228572 R 242619 CDS NP_905353.1 34540874 2553290 1231344..1231436 1 NC_002950.2 hypothetical protein 1231436 2553290 PG1148 Porphyromonas gingivalis W83 hypothetical protein NP_905353.1 1231344 D 242619 CDS NP_905354.1 34540875 2553289 1231782..1232909 1 NC_002950.2 similar to GB:U04847, and PID:440240; identified by sequence similarity; putative; glycosyl transferase 1232909 2553289 PG1149 Porphyromonas gingivalis W83 glycosyl transferase NP_905354.1 1231782 D 242619 CDS NP_905355.1 34540876 2553287 1233046..1233309 1 NC_002950.2 hypothetical protein 1233309 2553287 PG1150 Porphyromonas gingivalis W83 hypothetical protein NP_905355.1 1233046 D 242619 CDS NP_905356.1 34540877 2553288 1233290..1234438 1 NC_002950.2 iron-containing alcohol dehydrogenase 1234438 2553288 PG1151 Porphyromonas gingivalis W83 iron-containing alcohol dehydrogenase NP_905356.1 1233290 D 242619 CDS NP_905357.1 34540878 2553257 complement(1234764..1235036) 1 NC_002950.2 hypothetical protein 1235036 2553257 PG1152 Porphyromonas gingivalis W83 hypothetical protein NP_905357.1 1234764 R 242619 CDS NP_905358.1 34540879 2553283 complement(1235066..1235779) 1 NC_002950.2 hypothetical protein 1235779 2553283 PG1153 Porphyromonas gingivalis W83 hypothetical protein NP_905358.1 1235066 R 242619 CDS NP_905359.1 34540880 2553282 complement(1235787..1235915) 1 NC_002950.2 hypothetical protein 1235915 2553282 PG1154 Porphyromonas gingivalis W83 hypothetical protein NP_905359.1 1235787 R 242619 CDS NP_905360.1 34540881 2553281 1236001..1236891 1 NC_002950.2 ADP-heptose--LPS heptosyltransferase 1236891 2553281 PG1155 Porphyromonas gingivalis W83 ADP-heptose--LPS heptosyltransferase NP_905360.1 1236001 D 242619 CDS NP_905361.1 34540882 2553277 1236875..1237327 1 NC_002950.2 S4 domain-containing protein 1237327 2553277 PG1156 Porphyromonas gingivalis W83 S4 domain-containing protein NP_905361.1 1236875 D 242619 CDS NP_905362.1 34540883 2553276 complement(1238047..1239057) 1 NC_002950.2 cobalamin biosynthesis protein CbiB 1239057 cbiB 2553276 cbiB Porphyromonas gingivalis W83 cobalamin biosynthesis protein CbiB NP_905362.1 1238047 R 242619 CDS NP_905363.1 34540884 2553275 complement(1239071..1240078) 1 NC_002950.2 similar to GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, PID:1786365, GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, and PID:1786365; identified by sequence similarity; putative; L-threonine-O-3-phosphate decarboxylase 1240078 2553275 PG1160 Porphyromonas gingivalis W83 L-threonine-O-3-phosphate decarboxylase NP_905363.1 1239071 R 242619 CDS NP_905364.1 34540885 2553270 complement(1241563..1242129) 1 NC_002950.2 similar to GB:X63125, PID:402789, GB:X63125, and PID:402789; identified by sequence similarity; putative; ATP:cob(I)alamin adenosyltransferase 1242129 2553270 PG1162 Porphyromonas gingivalis W83 ATP:cob(I)alamin adenosyltransferase NP_905364.1 1241563 R 242619 CDS NP_905365.1 34540886 2553267 complement(1242152..1243471) 1 NC_002950.2 cobyrinic acid a,c-diamide synthase 1243471 cbiA 2553267 cbiA Porphyromonas gingivalis W83 cobyrinic acid a,c-diamide synthase NP_905365.1 1242152 R 242619 CDS NP_905366.1 34540887 2553265 complement(1244197..1247604) 1 NC_002950.2 hypothetical protein 1247604 2553265 PG1164 Porphyromonas gingivalis W83 hypothetical protein NP_905366.1 1244197 R 242619 CDS NP_905367.1 34540888 2553266 complement(1247601..1248317) 1 NC_002950.2 hypothetical protein 1248317 2553266 PG1165 Porphyromonas gingivalis W83 hypothetical protein NP_905367.1 1247601 R 242619 CDS NP_905368.1 34540889 2553263 complement(1248390..1248533) 1 NC_002950.2 hypothetical protein 1248533 2553263 PG1166 Porphyromonas gingivalis W83 hypothetical protein NP_905368.1 1248390 R 242619 CDS NP_905369.1 34540890 2553262 1248567..1248704 1 NC_002950.2 hypothetical protein 1248704 2553262 PG1167 Porphyromonas gingivalis W83 hypothetical protein NP_905369.1 1248567 D 242619 CDS NP_905370.1 34540891 2552150 complement(1249173..1249271) 1 NC_002950.2 hypothetical protein 1249271 2552150 PG1169 Porphyromonas gingivalis W83 hypothetical protein NP_905370.1 1249173 R 242619 CDS NP_905371.1 34540892 2552142 1249303..1250175 1 NC_002950.2 similar to SP:P33107, and PID:44436; identified by sequence similarity; putative; SerB family protein 1250175 2552142 PG1170 Porphyromonas gingivalis W83 SerB family protein NP_905371.1 1249303 D 242619 CDS NP_905372.1 34540893 2552157 1250495..1251235 1 NC_002950.2 identified by match to PFAM protein family HMM PF02754; oxidoreductase 1251235 2552157 PG1171 Porphyromonas gingivalis W83 oxidoreductase NP_905372.1 1250495 D 242619 CDS NP_905373.1 34540894 2552155 1251313..1252599 1 NC_002950.2 iron-sulfur cluster binding protein 1252599 2552155 PG1172 Porphyromonas gingivalis W83 iron-sulfur cluster binding protein NP_905373.1 1251313 D 242619 CDS NP_905374.1 34540895 2552154 1252575..1253189 1 NC_002950.2 identified by match to PFAM protein family HMM PF02589; hypothetical protein 1253189 2552154 PG1173 Porphyromonas gingivalis W83 hypothetical protein NP_905374.1 1252575 D 242619 CDS NP_905375.1 34540896 2552152 complement(1253300..1253797) 1 NC_002950.2 thioesterase 1253797 2552152 PG1174 Porphyromonas gingivalis W83 thioesterase NP_905375.1 1253300 R 242619 CDS NP_905376.1 34540897 2553258 complement(1254260..1255966) 1 NC_002950.2 ABC transporter ATP-binding protein 1255966 2553258 PG1175 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905376.1 1254260 R 242619 CDS NP_905377.1 34540898 2553261 complement(1256013..1257734) 1 NC_002950.2 ABC transporter ATP-binding protein 1257734 2553261 PG1176 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905377.1 1256013 R 242619 CDS NP_905378.1 34540899 2553253 complement(1257884..1258969) 1 NC_002950.2 ISPg1, transposase 1258969 2553253 PG1177 Porphyromonas gingivalis W83 ISPg1, transposase NP_905378.1 1257884 R 242619 CDS NP_905379.1 34540900 2553254 complement(1259150..1260427) 1 NC_002950.2 hypothetical protein 1260427 2553254 PG1178 Porphyromonas gingivalis W83 hypothetical protein NP_905379.1 1259150 R 242619 CDS NP_905380.1 34540901 2553251 complement(1260431..1261222) 1 NC_002950.2 hypothetical protein 1261222 2553251 PG1179 Porphyromonas gingivalis W83 hypothetical protein NP_905380.1 1260431 R 242619 CDS NP_905381.1 34540902 2553252 complement(1261300..1263705) 1 NC_002950.2 similar to SP:P19371; identified by sequence similarity; putative; hypothetical protein 1263705 2553252 PG1180 Porphyromonas gingivalis W83 hypothetical protein NP_905381.1 1261300 R 242619 CDS NP_905382.1 34540903 2553247 complement(1263746..1264345) 1 NC_002950.2 TetR family transcriptional regulator 1264345 2553247 PG1181 Porphyromonas gingivalis W83 TetR family transcriptional regulator NP_905382.1 1263746 R 242619 CDS NP_905383.1 34540904 2553246 complement(1265425..1266960) 1 NC_002950.2 alginate O-acetyltransferase 1266960 2553246 PG1184 Porphyromonas gingivalis W83 alginate O-acetyltransferase NP_905383.1 1265425 R 242619 CDS NP_905384.1 34540905 2553243 complement(1266982..1267842) 1 NC_002950.2 hypothetical protein 1267842 2553243 PG1185 Porphyromonas gingivalis W83 hypothetical protein NP_905384.1 1266982 R 242619 CDS NP_905385.1 34540906 2553240 complement(1267793..1269241) 1 NC_002950.2 hypothetical protein 1269241 2553240 PG1186 Porphyromonas gingivalis W83 hypothetical protein NP_905385.1 1267793 R 242619 CDS NP_905386.1 34540907 2553244 1270132..1272012 1 NC_002950.2 hypothetical protein 1272012 2553244 PG1189 Porphyromonas gingivalis W83 hypothetical protein NP_905386.1 1270132 D 242619 CDS NP_905387.1 34540908 2553239 1272252..1273205 1 NC_002950.2 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 1273205 hprA 2553239 hprA Porphyromonas gingivalis W83 glycerate dehydrogenase NP_905387.1 1272252 D 242619 CDS NP_905388.1 34540909 2553236 1274119..1275267 1 NC_002950.2 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 1275267 bioF-2 2553236 bioF-2 Porphyromonas gingivalis W83 8-amino-7-oxononanoate synthase NP_905388.1 1274119 D 242619 CDS NP_905389.1 34540910 2553242 1275267..1275419 1 NC_002950.2 hypothetical protein 1275419 2553242 PG1196 Porphyromonas gingivalis W83 hypothetical protein NP_905389.1 1275267 D 242619 CDS NP_905390.1 34540911 2553235 complement(1275565..1276650) 1 NC_002950.2 ISPg1, transposase 1276650 2553235 PG1197 Porphyromonas gingivalis W83 ISPg1, transposase NP_905390.1 1275565 R 242619 CDS NP_905391.1 34540912 2553232 1276790..1277029 1 NC_002950.2 hypothetical protein 1277029 2553232 PG1198 Porphyromonas gingivalis W83 hypothetical protein NP_905391.1 1276790 D 242619 CDS NP_905392.1 34540913 2553233 1277033..1277458 1 NC_002950.2 hypothetical protein 1277458 2553233 PG1199 Porphyromonas gingivalis W83 hypothetical protein NP_905392.1 1277033 D 242619 CDS NP_905393.1 34540914 2553230 complement(1277570..1278082) 1 NC_002950.2 hypothetical protein 1278082 2553230 PG1200 Porphyromonas gingivalis W83 hypothetical protein NP_905393.1 1277570 R 242619 CDS NP_905394.1 34540915 2553227 complement(1279682..1283104) 1 NC_002950.2 hypothetical protein 1283104 2553227 PG1202 Porphyromonas gingivalis W83 hypothetical protein NP_905394.1 1279682 R 242619 CDS NP_905395.1 34540916 2553226 complement(1283327..1283536) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01381; transcriptional regulator 1283536 2553226 PG1203 Porphyromonas gingivalis W83 transcriptional regulator NP_905395.1 1283327 R 242619 CDS NP_905396.1 34540917 2553225 1284093..1284563 1 NC_002950.2 identified by match to PFAM protein family HMM PF00216; histone-like family DNA-binding protein 1284563 2553225 PG1205 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_905396.1 1284093 D 242619 CDS NP_905397.1 34540918 2553224 complement(1284649..1284870) 1 NC_002950.2 hypothetical protein 1284870 2553224 PG1206 Porphyromonas gingivalis W83 hypothetical protein NP_905397.1 1284649 R 242619 CDS NP_905398.1 34540919 2553223 complement(1284863..1285021) 1 NC_002950.2 hypothetical protein 1285021 2553223 PG1207 Porphyromonas gingivalis W83 hypothetical protein NP_905398.1 1284863 R 242619 CDS NP_905399.1 34540920 2553221 complement(1285083..1287005) 1 NC_002950.2 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1287005 dnaK 2553221 dnaK Porphyromonas gingivalis W83 molecular chaperone DnaK NP_905399.1 1285083 R 242619 CDS NP_905400.1 34540921 2553377 1287585..1289135 1 NC_002950.2 hypothetical protein 1289135 2553377 PG1209 Porphyromonas gingivalis W83 hypothetical protein NP_905400.1 1287585 D 242619 CDS NP_905401.1 34540922 2552190 1289184..1290971 1 NC_002950.2 M24 family peptidase 1290971 2552190 PG1210 Porphyromonas gingivalis W83 M24 family peptidase NP_905401.1 1289184 D 242619 CDS NP_905402.1 34540923 2552175 1290941..1291519 1 NC_002950.2 similar to GB:Z36940, SP:P45492, and PID:535813; identified by sequence similarity; putative; hexapeptide transferase 1291519 2552175 PG1211 Porphyromonas gingivalis W83 hexapeptide transferase NP_905402.1 1290941 D 242619 CDS NP_905403.1 34540924 2553366 1291532..1292545 1 NC_002950.2 hypothetical protein 1292545 2553366 PG1212 Porphyromonas gingivalis W83 hypothetical protein NP_905403.1 1291532 D 242619 CDS NP_905404.1 34540925 2553213 1292573..1293223 1 NC_002950.2 identified by match to PFAM protein family HMM PF00075; ribonuclease H 1293223 rnhA 2553213 rnhA Porphyromonas gingivalis W83 ribonuclease H NP_905404.1 1292573 D 242619 CDS NP_905405.1 34540926 2553120 1293172..1294410 1 NC_002950.2 hypothetical protein 1294410 2553120 PG1214 Porphyromonas gingivalis W83 hypothetical protein NP_905405.1 1293172 D 242619 CDS NP_905406.1 34540927 2553125 1294761..1295573 1 NC_002950.2 lipoprotein 1295573 2553125 PG1215 Porphyromonas gingivalis W83 lipoprotein NP_905406.1 1294761 D 242619 CDS NP_905407.1 34540928 2553123 1295570..1295725 1 NC_002950.2 hypothetical protein 1295725 2553123 PG1216 Porphyromonas gingivalis W83 hypothetical protein NP_905407.1 1295570 D 242619 CDS NP_905408.1 34540929 2553124 1295715..1296047 1 NC_002950.2 hypothetical protein 1296047 2553124 PG1217 Porphyromonas gingivalis W83 hypothetical protein NP_905408.1 1295715 D 242619 CDS NP_905409.1 34540930 2552116 1296077..1296535 1 NC_002950.2 hypothetical protein 1296535 2552116 PG1218 Porphyromonas gingivalis W83 hypothetical protein NP_905409.1 1296077 D 242619 CDS NP_905410.1 34540931 2552115 1296811..1297122 1 NC_002950.2 hypothetical protein 1297122 2552115 PG1219 Porphyromonas gingivalis W83 hypothetical protein NP_905410.1 1296811 D 242619 CDS NP_905411.1 34540932 2552114 1297126..1298259 1 NC_002950.2 Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 1298259 2552114 PG1220 Porphyromonas gingivalis W83 erythronate-4-phosphate dehydrogenase NP_905411.1 1297126 D 242619 CDS NP_905412.1 34540933 2552113 1298269..1298994 1 NC_002950.2 similar to GB:X74801, GB:U17104, SP:P49368, PID:609308, and PID:671527; identified by sequence similarity; putative; short chain dehydrogenase/reductase oxidoreductase 1298994 2552113 PG1221 Porphyromonas gingivalis W83 short chain dehydrogenase/reductase oxidoreductase NP_905412.1 1298269 D 242619 CDS NP_905413.1 34540934 2552112 complement(1299165..1299482) 1 NC_002950.2 hypothetical protein 1299482 2552112 PG1222 Porphyromonas gingivalis W83 hypothetical protein NP_905413.1 1299165 R 242619 CDS NP_905414.1 34540935 2552110 1299601..1299804 1 NC_002950.2 hypothetical protein 1299804 2552110 PG1223 Porphyromonas gingivalis W83 hypothetical protein NP_905414.1 1299601 D 242619 CDS NP_905415.1 34540936 2552108 1301525..1303396 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01716; ABC transporter ATP-binding protein 1303396 2552108 PG1225 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905415.1 1301525 D 242619 CDS NP_905416.1 34540937 2552106 1303404..1304108 1 NC_002950.2 cyclophilin type peptidyl-prolyl cis-trans isomerase 1304108 2552106 PG1226 Porphyromonas gingivalis W83 cyclophilin type peptidyl-prolyl cis-trans isomerase NP_905416.1 1303404 D 242619 CDS NP_905417.1 34540938 2552104 complement(1305649..1305942) 1 NC_002950.2 hypothetical protein 1305942 2552104 PG1229 Porphyromonas gingivalis W83 hypothetical protein NP_905417.1 1305649 R 242619 CDS NP_905418.1 34540939 2553198 complement(1306050..1308158) 1 NC_002950.2 hypothetical protein 1308158 2553198 PG1230 Porphyromonas gingivalis W83 hypothetical protein NP_905418.1 1306050 R 242619 CDS NP_905419.1 34540940 2553197 complement(1308364..1309701) 1 NC_002950.2 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADH; forms a homohexamer; glutamate dehydrogenase 1309701 gdh 2553197 gdh Porphyromonas gingivalis W83 glutamate dehydrogenase NP_905419.1 1308364 R 242619 CDS NP_905420.1 34540941 2552134 1310025..1310135 1 NC_002950.2 hypothetical protein 1310135 2552134 PG1233 Porphyromonas gingivalis W83 hypothetical protein NP_905420.1 1310025 D 242619 CDS NP_905421.1 34540942 2552131 1310252..1310380 1 NC_002950.2 hypothetical protein 1310380 2552131 PG1234 Porphyromonas gingivalis W83 hypothetical protein NP_905421.1 1310252 D 242619 CDS NP_905422.1 34540943 2552132 complement(1310390..1311346) 1 NC_002950.2 epimerase/reductase 1311346 2552132 PG1235 Porphyromonas gingivalis W83 epimerase/reductase NP_905422.1 1310390 R 242619 CDS NP_905423.1 34540944 2552129 1311662..1312372 1 NC_002950.2 hypothetical protein 1312372 2552129 PG1236 Porphyromonas gingivalis W83 hypothetical protein NP_905423.1 1311662 D 242619 CDS NP_905424.1 34540945 2552125 1312369..1312968 1 NC_002950.2 LuxR family transcriptional regulator 1312968 2552125 PG1237 Porphyromonas gingivalis W83 LuxR family transcriptional regulator NP_905424.1 1312369 D 242619 CDS NP_905425.1 34540946 2553192 complement(1313713..1314459) 1 NC_002950.2 similar to SP:P25921, and PID:150653; identified by sequence similarity; putative; 3-oxoacyl-ACP reductase 1314459 fabG 2553192 fabG Porphyromonas gingivalis W83 3-oxoacyl-ACP reductase NP_905425.1 1313713 R 242619 CDS NP_905426.1 34540947 2553191 complement(1314543..1315151) 1 NC_002950.2 TetR family transcriptional regulator 1315151 2553191 PG1240 Porphyromonas gingivalis W83 TetR family transcriptional regulator NP_905426.1 1314543 R 242619 CDS NP_905427.1 34540948 2553188 1315753..1317540 1 NC_002950.2 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1317540 lepA 2553188 lepA Porphyromonas gingivalis W83 GTP-binding protein LepA NP_905427.1 1315753 D 242619 CDS NP_905428.1 34540949 2553187 1317575..1319161 1 NC_002950.2 replicative DNA helicase 1319161 dnaB 2553187 dnaB Porphyromonas gingivalis W83 replicative DNA helicase NP_905428.1 1317575 D 242619 CDS NP_905429.1 34540950 2553183 1319674..1320759 1 NC_002950.2 ISPg1, transposase 1320759 2553183 PG1244 Porphyromonas gingivalis W83 ISPg1, transposase NP_905429.1 1319674 D 242619 CDS NP_905430.1 34540951 2553302 1321939..1324569 1 NC_002950.2 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1324569 alaS 2553302 alaS Porphyromonas gingivalis W83 alanyl-tRNA synthetase NP_905430.1 1321939 D 242619 CDS NP_905431.1 34540952 2553182 1324584..1325645 1 NC_002950.2 similar to GB:Z22606, PID:405799, and SP:P50001; identified by sequence similarity; putative; 3-dehydroquinate synthase 1325645 aroB 2553182 aroB Porphyromonas gingivalis W83 3-dehydroquinate synthase NP_905431.1 1324584 D 242619 CDS NP_905432.1 34540953 2553181 complement(1325891..1326622) 1 NC_002950.2 hypothetical protein 1326622 2553181 PG1248 Porphyromonas gingivalis W83 hypothetical protein NP_905432.1 1325891 R 242619 CDS NP_905433.1 34540954 2553179 complement(1326637..1327251) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1327251 2553179 PG1249 Porphyromonas gingivalis W83 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_905433.1 1326637 R 242619 CDS NP_905434.1 34540955 2553153 complement(1327274..1327936) 1 NC_002950.2 hypothetical protein 1327936 2553153 PG1250 Porphyromonas gingivalis W83 hypothetical protein NP_905434.1 1327274 R 242619 CDS NP_905435.1 34540956 2553177 1327919..1328272 1 NC_002950.2 hypothetical protein 1328272 2553177 PG1251 Porphyromonas gingivalis W83 hypothetical protein NP_905435.1 1327919 D 242619 CDS NP_905436.1 34540957 2553173 complement(1328439..1329674) 1 NC_002950.2 similar to GB:Z33058, and PID:530419; identified by sequence similarity; putative; hypothetical protein 1329674 2553173 PG1252 Porphyromonas gingivalis W83 hypothetical protein NP_905436.1 1328439 R 242619 CDS NP_905437.1 34540958 2553175 complement(1329687..1331696) 1 NC_002950.2 NAD-dependent DNA ligase 1331696 ligA 2553175 ligA Porphyromonas gingivalis W83 NAD-dependent DNA ligase NP_905437.1 1329687 R 242619 CDS NP_905438.1 34540959 2553157 complement(1331684..1332211) 1 NC_002950.2 acetyltransferase 1332211 2553157 PG1254 Porphyromonas gingivalis W83 acetyltransferase NP_905438.1 1331684 R 242619 CDS NP_905439.1 34540960 2553145 complement(1332218..1332841) 1 NC_002950.2 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1332841 recR 2553145 recR Porphyromonas gingivalis W83 recombination protein RecR NP_905439.1 1332218 R 242619 CDS NP_905440.1 34540961 2552186 complement(1332838..1334352) 1 NC_002950.2 ribonuclease 1334352 2552186 PG1256 Porphyromonas gingivalis W83 ribonuclease NP_905440.1 1332838 R 242619 CDS NP_905441.1 34540962 2552185 complement(1334551..1334643) 1 NC_002950.2 hypothetical protein 1334643 2552185 PG1257 Porphyromonas gingivalis W83 hypothetical protein NP_905441.1 1334551 R 242619 CDS NP_905442.1 34540963 2553220 complement(1334674..1334952) 1 NC_002950.2 similar to GB:L05425, PID:179285, GB:L05425, and PID:179285; identified by sequence similarity; putative; DNA-binding protein HU 1334952 hup-2 2553220 hup-2 Porphyromonas gingivalis W83 DNA-binding protein HU NP_905442.1 1334674 R 242619 CDS NP_905443.1 34540964 2553152 complement(1335064..1335555) 1 NC_002950.2 anaerobic ribonucleoside-triphosphate reductase activating protein 1335555 nrdG 2553152 nrdG Porphyromonas gingivalis W83 anaerobic ribonucleoside-triphosphate reductase activating protein NP_905443.1 1335064 R 242619 CDS NP_905444.1 34540965 2553161 complement(1335588..1337984) 1 NC_002950.2 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1337984 2553161 PG1260 Porphyromonas gingivalis W83 anaerobic ribonucleoside triphosphate reductase NP_905444.1 1335588 R 242619 CDS NP_905445.1 34540966 2553162 1338511..1339668 1 NC_002950.2 ISPg4, transposase 1339668 2553162 PG1261 Porphyromonas gingivalis W83 ISPg4, transposase NP_905445.1 1338511 D 242619 CDS NP_905446.1 34540967 2553164 complement(1339822..1340724) 1 NC_002950.2 ISPg3, transposase 1340724 2553164 PG1262 Porphyromonas gingivalis W83 ISPg3, transposase NP_905446.1 1339822 R 242619 CDS NP_905447.1 34540968 2553136 complement(1344830..1344985) 1 NC_002950.2 hypothetical protein 1344985 2553136 PG1264 Porphyromonas gingivalis W83 hypothetical protein NP_905447.1 1344830 R 242619 CDS NP_905448.1 34540969 2552138 complement(1345114..1345272) 1 NC_002950.2 hypothetical protein 1345272 2552138 PG1265 Porphyromonas gingivalis W83 hypothetical protein NP_905448.1 1345114 R 242619 CDS NP_905449.1 34540970 2553129 complement(1346859..1347077) 1 NC_002950.2 hypothetical protein 1347077 2553129 PG1266 Porphyromonas gingivalis W83 hypothetical protein NP_905449.1 1346859 R 242619 CDS NP_905450.1 34540971 2553130 1347106..1347273 1 NC_002950.2 hypothetical protein 1347273 2553130 PG1267 Porphyromonas gingivalis W83 hypothetical protein NP_905450.1 1347106 D 242619 CDS NP_905451.1 34540972 2553156 1347511..1347609 1 NC_002950.2 hypothetical protein 1347609 2553156 PG1268 Porphyromonas gingivalis W83 hypothetical protein NP_905451.1 1347511 D 242619 CDS NP_905452.1 34540973 2553160 complement(1347660..1349291) 1 NC_002950.2 similar to GB:X67475, PID:42342, SP:P24185, GB:U00096, PID:1742409, PID:1742419, and PID:1787750; identified by sequence similarity; putative; delta-1-pyrroline-5-carboxylate dehydrogenase 1349291 pruA 2553160 pruA Porphyromonas gingivalis W83 delta-1-pyrroline-5-carboxylate dehydrogenase NP_905452.1 1347660 R 242619 CDS NP_905453.1 34540974 2553132 complement(1349368..1350297) 1 NC_002950.2 identified by match to PFAM protein family HMM PF02274; hypothetical protein 1350297 2553132 PG1270 Porphyromonas gingivalis W83 hypothetical protein NP_905453.1 1349368 R 242619 CDS NP_905454.1 34540975 2553146 complement(1350304..1351533) 1 NC_002950.2 similar to GB:L06132, SP:P21796, and PID:340199; identified by sequence similarity; putative; acetylornithine aminotransferase 1351533 2553146 PG1271 Porphyromonas gingivalis W83 acetylornithine aminotransferase NP_905454.1 1350304 R 242619 CDS NP_905455.1 34540976 2553172 complement(1351772..1351927) 1 NC_002950.2 hypothetical protein 1351927 2553172 PG1273 Porphyromonas gingivalis W83 hypothetical protein NP_905455.1 1351772 R 242619 CDS NP_905456.1 34540977 2553135 1351983..1352549 1 NC_002950.2 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1352549 efp-2 2553135 efp-2 Porphyromonas gingivalis W83 elongation factor P NP_905456.1 1351983 D 242619 CDS NP_905457.1 34540978 2553154 1353085..1353591 1 NC_002950.2 identified by match to PFAM protein family HMM PF00216; histone-like family DNA-binding protein 1353591 2553154 PG1276 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_905457.1 1353085 D 242619 CDS NP_905458.1 34540979 2553211 1353894..1355159 1 NC_002950.2 UDP-glucose-6 dehydrogenase 1355159 2553211 PG1277 Porphyromonas gingivalis W83 UDP-glucose-6 dehydrogenase NP_905458.1 1353894 D 242619 CDS NP_905459.1 34540980 2553159 1355492..1356574 1 NC_002950.2 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1356574 serC 2553159 serC Porphyromonas gingivalis W83 phosphoserine aminotransferase NP_905459.1 1355492 D 242619 CDS NP_905460.1 34540981 2553140 1356675..1357595 1 NC_002950.2 D-isomer specific 2-hydroxyacid dehydrogenase 1357595 2553140 PG1279 Porphyromonas gingivalis W83 D-isomer specific 2-hydroxyacid dehydrogenase NP_905460.1 1356675 D 242619 CDS NP_905461.1 34540982 2553166 1357614..1358861 1 NC_002950.2 hypothetical protein 1358861 2553166 PG1280 Porphyromonas gingivalis W83 hypothetical protein NP_905461.1 1357614 D 242619 CDS NP_905462.1 34540983 2553376 1358988..1360151 1 NC_002950.2 hypothetical protein 1360151 2553376 PG1281 Porphyromonas gingivalis W83 hypothetical protein NP_905462.1 1358988 D 242619 CDS NP_905463.1 34540984 2553170 1360175..1360630 1 NC_002950.2 similar to GB:U22662, and PID:726513; identified by sequence similarity; putative; hypothetical protein 1360630 2553170 PG1282 Porphyromonas gingivalis W83 hypothetical protein NP_905463.1 1360175 D 242619 CDS NP_905464.1 34540985 2553138 1360693..1362855 1 NC_002950.2 hypothetical protein 1362855 2553138 PG1283 Porphyromonas gingivalis W83 hypothetical protein NP_905464.1 1360693 D 242619 CDS NP_905465.1 34540986 2551729 1363034..1365001 1 NC_002950.2 glucosamine-6-phosphate deaminase 1365001 2551729 PG1285 Porphyromonas gingivalis W83 glucosamine-6-phosphate deaminase NP_905465.1 1363034 D 242619 CDS NP_905466.1 34540987 2551792 complement(1365109..1365591) 1 NC_002950.2 ferritin 1365591 ftn 2551792 ftn Porphyromonas gingivalis W83 ferritin NP_905466.1 1365109 R 242619 CDS NP_905467.1 34540988 2551440 1366103..1367188 1 NC_002950.2 GDP-mannose 4,6-dehydratase 1367188 gmd 2551440 gmd Porphyromonas gingivalis W83 GDP-mannose 4,6-dehydratase NP_905467.1 1366103 D 242619 CDS NP_905468.1 34540989 2551723 1367181..1368254 1 NC_002950.2 GDP-fucose synthetase 1368254 fcl 2551723 fcl Porphyromonas gingivalis W83 GDP-fucose synthetase NP_905468.1 1367181 D 242619 CDS NP_905469.1 34540990 2551658 1368393..1369412 1 NC_002950.2 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1369412 ilvE 2551658 ilvE Porphyromonas gingivalis W83 branched-chain amino acid aminotransferase NP_905469.1 1368393 D 242619 CDS NP_905470.1 34540991 2551566 complement(1369541..1371268) 1 NC_002950.2 hypothetical protein 1371268 2551566 PG1291 Porphyromonas gingivalis W83 hypothetical protein NP_905470.1 1369541 R 242619 CDS NP_905471.1 34540992 2551867 1372187..1374721 1 NC_002950.2 ferrous iron transport protein B 1374721 feoB-2 2551867 feoB-2 Porphyromonas gingivalis W83 ferrous iron transport protein B NP_905471.1 1372187 D 242619 CDS NP_905472.1 34540993 2551722 1374934..1375389 1 NC_002950.2 hypothetical protein 1375389 2551722 PG1296 Porphyromonas gingivalis W83 hypothetical protein NP_905472.1 1374934 D 242619 CDS NP_905473.1 34540994 2551856 1375971..1377770 1 NC_002950.2 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1377770 rpsA 2551856 rpsA Porphyromonas gingivalis W83 30S ribosomal protein S1 NP_905473.1 1375971 D 242619 CDS NP_905474.1 34540995 2551865 complement(1378620..1379159) 1 NC_002950.2 hypothetical protein 1379159 2551865 PG1300 Porphyromonas gingivalis W83 hypothetical protein NP_905474.1 1378620 R 242619 CDS NP_905475.1 34540996 2551846 complement(1379196..1380011) 1 NC_002950.2 hypothetical protein 1380011 2551846 PG1301 Porphyromonas gingivalis W83 hypothetical protein NP_905475.1 1379196 R 242619 CDS NP_905476.1 34540997 2551644 complement(1380029..1380727) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01707; hypothetical protein 1380727 2551644 PG1302 Porphyromonas gingivalis W83 hypothetical protein NP_905476.1 1380029 R 242619 CDS NP_905477.1 34540998 2551884 1380792..1382207 1 NC_002950.2 similar to GB:M67471, SP:P25146, PID:149674, PID:887026, PID:887868, PID:887874, SP:P23462, and PID:152000; identified by sequence similarity; putative; helicase 1382207 2551884 PG1303 Porphyromonas gingivalis W83 helicase NP_905477.1 1380792 D 242619 CDS NP_905478.1 34540999 2551550 complement(1382224..1383564) 1 NC_002950.2 hypothetical protein 1383564 2551550 PG1304 Porphyromonas gingivalis W83 hypothetical protein NP_905478.1 1382224 R 242619 CDS NP_905479.1 34541000 2551882 complement(1383761..1386628) 1 NC_002950.2 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1386628 gcvP 2551882 gcvP Porphyromonas gingivalis W83 glycine dehydrogenase NP_905479.1 1383761 R 242619 CDS NP_905480.1 34541001 2551809 complement(1386633..1387277) 1 NC_002950.2 metallo-beta-lactamase 1387277 2551809 PG1306 Porphyromonas gingivalis W83 metallo-beta-lactamase NP_905480.1 1386633 R 242619 CDS NP_905481.1 34541002 2551453 complement(1387274..1387939) 1 NC_002950.2 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1387939 gidB 2551453 gidB Porphyromonas gingivalis W83 16S rRNA methyltransferase GidB NP_905481.1 1387274 R 242619 CDS NP_905482.1 34541003 2551812 complement(1387973..1388818) 1 NC_002950.2 hypothetical protein 1388818 2551812 PG1308 Porphyromonas gingivalis W83 hypothetical protein NP_905482.1 1387973 R 242619 CDS NP_905483.1 34541004 2551879 1389224..1389886 1 NC_002950.2 exsB protein 1389886 2551879 PG1310 Porphyromonas gingivalis W83 exsB protein NP_905483.1 1389224 D 242619 CDS NP_905484.1 34541005 2551989 1389849..1390415 1 NC_002950.2 identified by match to PFAM protein family HMM PF00149; hypothetical protein 1390415 2551989 PG1311 Porphyromonas gingivalis W83 hypothetical protein NP_905484.1 1389849 D 242619 CDS NP_905485.1 34541006 2551864 1390426..1391613 1 NC_002950.2 capA protein 1391613 2551864 PG1312 Porphyromonas gingivalis W83 capA protein NP_905485.1 1390426 D 242619 CDS NP_905486.1 34541007 2551818 1392422..1394080 1 NC_002950.2 dipeptidase-like protein 1394080 2551818 PG1313 Porphyromonas gingivalis W83 dipeptidase-like protein NP_905486.1 1392422 D 242619 CDS NP_905487.1 34541008 2551821 complement(1394452..1395558) 1 NC_002950.2 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1395558 aroC 2551821 aroC Porphyromonas gingivalis W83 chorismate synthase NP_905487.1 1394452 R 242619 CDS NP_905488.1 34541009 2551720 complement(1395708..1396280) 1 NC_002950.2 similar to GB:L19084, SP:P33668, PID:304942, GB:U00096, PID:1773180, PID:1786707, GB:D90277, GB:L00692, GB:M22433, GB:L00693, GB:D90278, SP:P40198, PID:219537, and PID:553220; identified by sequence similarity; putative; peptidyl-prolyl cis-trans isomerase SlyD 1396280 slyD 2551720 slyD Porphyromonas gingivalis W83 peptidyl-prolyl cis-trans isomerase SlyD NP_905488.1 1395708 R 242619 CDS NP_905489.1 34541010 2551716 complement(1396331..1396861) 1 NC_002950.2 hypothetical protein 1396861 2551716 PG1316 Porphyromonas gingivalis W83 hypothetical protein NP_905489.1 1396331 R 242619 CDS NP_905490.1 34541011 2551545 complement(1396834..1397244) 1 NC_002950.2 hypothetical protein 1397244 2551545 PG1317 Porphyromonas gingivalis W83 hypothetical protein NP_905490.1 1396834 R 242619 CDS NP_905491.1 34541012 2551636 complement(1397292..1397858) 1 NC_002950.2 identified by match to PFAM protein family HMM PF04545; ECF subfamily RNA polymerase sigma factor 1397858 2551636 PG1318 Porphyromonas gingivalis W83 ECF subfamily RNA polymerase sigma factor NP_905491.1 1397292 R 242619 CDS NP_905492.1 34541013 2551975 1398892..1399527 1 NC_002950.2 ISPg1, transposase, internal deletion 1399527 2551975 PG1320 Porphyromonas gingivalis W83 ISPg1, transposase, internal deletion NP_905492.1 1398892 D 242619 CDS NP_905493.1 34541014 2551977 complement(1399746..1401413) 1 NC_002950.2 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1401413 fhs 2551977 fhs Porphyromonas gingivalis W83 formate--tetrahydrofolate ligase NP_905493.1 1399746 R 242619 CDS NP_905494.1 34541015 2551982 1401570..1402904 1 NC_002950.2 PhoH family protein 1402904 2551982 PG1323 Porphyromonas gingivalis W83 PhoH family protein NP_905494.1 1401570 D 242619 CDS NP_905495.1 34541016 2551993 complement(1402952..1403521) 1 NC_002950.2 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1403521 ruvC 2551993 ruvC Porphyromonas gingivalis W83 Holliday junction resolvase NP_905495.1 1402952 R 242619 CDS NP_905496.1 34541017 2551899 complement(1403594..1403968) 1 NC_002950.2 hypothetical protein 1403968 2551899 PG1325 Porphyromonas gingivalis W83 hypothetical protein NP_905496.1 1403594 R 242619 CDS NP_905497.1 34541018 2551449 1404173..1405231 1 NC_002950.2 similar to GP:8925307; identified by sequence similarity; putative; hemagglutinin 1405231 2551449 PG1326 Porphyromonas gingivalis W83 hemagglutinin NP_905497.1 1404173 D 242619 CDS NP_905498.1 34541019 2551980 complement(1405360..1406670) 1 NC_002950.2 aminotransferase 1406670 2551980 PG1327 Porphyromonas gingivalis W83 aminotransferase NP_905498.1 1405360 R 242619 CDS NP_905499.1 34541020 2551657 complement(1406713..1408770) 1 NC_002950.2 similar to SP:P32673, GB:U00006, PID:396297, GB:U00096, and PID:1790387; identified by sequence similarity; putative; CoA ligase 1408770 2551657 PG1328 Porphyromonas gingivalis W83 CoA ligase NP_905499.1 1406713 R 242619 CDS NP_905500.1 34541021 2551872 1409806..1410225 1 NC_002950.2 large conductance mechanosensitive channel protein 1410225 mscL 2551872 mscL Porphyromonas gingivalis W83 large conductance mechanosensitive channel protein NP_905500.1 1409806 D 242619 CDS NP_905501.1 34541022 2551988 1412182..1414170 1 NC_002950.2 similar to SP:P35633, GB:L20677, PID:304185, GB:L15189, GB:L11066, GB:D17027, GB:D17196, SP:P38646, and PID:292059; identified by sequence similarity; putative; NAD(P) transhydrogenase subunit beta 1414170 pntB 2551988 pntB Porphyromonas gingivalis W83 NAD(P) transhydrogenase subunit beta NP_905501.1 1412182 D 242619 CDS NP_905502.1 34541023 2551757 complement(1414316..1415515) 1 NC_002950.2 hypothetical protein 1415515 2551757 PG1333 Porphyromonas gingivalis W83 hypothetical protein NP_905502.1 1414316 R 242619 CDS NP_905503.1 34541024 2551985 complement(1415512..1416492) 1 NC_002950.2 similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; band 7/Mec-2 family protein 1416492 2551985 PG1334 Porphyromonas gingivalis W83 band 7/Mec-2 family protein NP_905503.1 1415512 R 242619 CDS NP_905504.1 34541025 2551721 complement(1416520..1416984) 1 NC_002950.2 similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; hypothetical protein 1416984 2551721 PG1335 Porphyromonas gingivalis W83 hypothetical protein NP_905504.1 1416520 R 242619 CDS NP_905505.1 34541026 2551994 1417953..1418378 1 NC_002950.2 similar to GB:J02933, GB:M13232, SP:P08709, PID:1000710, PID:180334, and PID:182801; identified by sequence similarity; putative; umuD protein 1418378 umuD 2551994 umuD Porphyromonas gingivalis W83 umuD protein NP_905505.1 1417953 D 242619 CDS NP_905506.1 34541027 2551728 1418386..1419684 1 NC_002950.2 similar to GB:X13529, GB:U07236, GB:M36881, GB:X14055, SP:P06239, PID:187034, PID:34289, PID:34295, PID:349702, PID:35780, PID:460966, PID:553522, PID:775208, and PID:825687; identified by sequence similarity; putative; umuC protein 1419684 umuC 2551728 umuC Porphyromonas gingivalis W83 umuC protein NP_905506.1 1418386 D 242619 CDS NP_905507.1 34541028 2551549 complement(1420388..1421938) 1 NC_002950.2 similar to SP:P00209; identified by sequence similarity; putative; L-lactate permease 1421938 2551549 PG1340 Porphyromonas gingivalis W83 L-lactate permease NP_905507.1 1420388 R 242619 CDS NP_905508.1 34541029 2551662 1422171..1422725 1 NC_002950.2 hypothetical protein 1422725 2551662 PG1341 Porphyromonas gingivalis W83 hypothetical protein NP_905508.1 1422171 D 242619 CDS NP_905509.1 34541030 2551534 1422725..1423741 1 NC_002950.2 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1423741 murB 2551534 murB Porphyromonas gingivalis W83 UDP-N-acetylenolpyruvoylglucosamine reductase NP_905509.1 1422725 D 242619 CDS NP_905510.1 34541031 2551531 1423768..1425246 1 NC_002950.2 similar to SP:P33912; identified by sequence similarity; putative; lipoate-protein ligase B 1425246 lipB 2551531 lipB Porphyromonas gingivalis W83 lipoate-protein ligase B NP_905510.1 1423768 D 242619 CDS NP_905511.1 34541032 2551537 1425730..1426851 1 NC_002950.2 glycosyl transferase 1426851 2551537 PG1345 Porphyromonas gingivalis W83 glycosyl transferase NP_905511.1 1425730 D 242619 CDS NP_905512.1 34541033 2551426 1426848..1428119 1 NC_002950.2 similar to GB:J03381, and SP:P10641; identified by sequence similarity; putative; glycosyl transferase 1428119 2551426 PG1346 Porphyromonas gingivalis W83 glycosyl transferase NP_905512.1 1426848 D 242619 CDS NP_905513.1 34541034 2551695 1428256..1428720 1 NC_002950.2 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1428720 2551695 PG1347 Porphyromonas gingivalis W83 7-cyano-7-deazaguanine reductase NP_905513.1 1428256 D 242619 CDS NP_905514.1 34541035 2551713 1428748..1429629 1 NC_002950.2 hypothetical protein 1429629 2551713 PG1348 Porphyromonas gingivalis W83 hypothetical protein NP_905514.1 1428748 D 242619 CDS NP_905515.1 34541036 2551536 1431006..1432136 1 NC_002950.2 similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase 1432136 2551536 PG1350 Porphyromonas gingivalis W83 ISPg2, transposase NP_905515.1 1431006 D 242619 CDS NP_905516.1 34541037 2551702 complement(1432328..1432834) 1 NC_002950.2 hypothetical protein 1432834 2551702 PG1351 Porphyromonas gingivalis W83 hypothetical protein NP_905516.1 1432328 R 242619 CDS NP_905517.1 34541038 2551541 complement(1432827..1433240) 1 NC_002950.2 hypothetical protein 1433240 2551541 PG1352 Porphyromonas gingivalis W83 hypothetical protein NP_905517.1 1432827 R 242619 CDS NP_905518.1 34541039 2551538 complement(1433291..1433923) 1 NC_002950.2 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1433923 pyrE 2551538 pyrE Porphyromonas gingivalis W83 orotate phosphoribosyltransferase NP_905518.1 1433291 R 242619 CDS NP_905519.1 34541040 2551547 complement(1434034..1434855) 1 NC_002950.2 carbon-nitrogen family hydrolase 1434855 2551547 PG1354 Porphyromonas gingivalis W83 carbon-nitrogen family hydrolase NP_905519.1 1434034 R 242619 CDS NP_905520.1 34541041 2551542 complement(1434852..1435382) 1 NC_002950.2 similar to GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, and PID:1789205; identified by sequence similarity; putative; acyltransferase 1435382 2551542 PG1355 Porphyromonas gingivalis W83 acyltransferase NP_905520.1 1434852 R 242619 CDS NP_905521.1 34541042 2551543 complement(1435451..1435939) 1 NC_002950.2 hypothetical protein 1435939 2551543 PG1356 Porphyromonas gingivalis W83 hypothetical protein NP_905521.1 1435451 R 242619 CDS NP_905522.1 34541043 2551554 complement(1436417..1436548) 1 NC_002950.2 hypothetical protein 1436548 2551554 PG1357 Porphyromonas gingivalis W83 hypothetical protein NP_905522.1 1436417 R 242619 CDS NP_905523.1 34541044 2551527 complement(1436743..1437423) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00583; acetyltransferase 1437423 2551527 PG1358 Porphyromonas gingivalis W83 acetyltransferase NP_905523.1 1436743 R 242619 CDS NP_905524.1 34541045 2551711 complement(1437734..1438705) 1 NC_002950.2 hypothetical protein 1438705 2551711 PG1359 Porphyromonas gingivalis W83 hypothetical protein NP_905524.1 1437734 R 242619 CDS NP_905525.1 34541046 2551935 complement(1438708..1440003) 1 NC_002950.2 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1440003 purD 2551935 purD Porphyromonas gingivalis W83 phosphoribosylamine--glycine ligase NP_905525.1 1438708 R 242619 CDS NP_905526.1 34541047 2551645 complement(1440000..1442198) 1 NC_002950.2 similar to GB:D31886, and PID:505100; identified by sequence similarity; putative; dipeptidyl aminopeptidase IV 1442198 2551645 PG1361 Porphyromonas gingivalis W83 dipeptidyl aminopeptidase IV NP_905526.1 1440000 R 242619 CDS NP_905527.1 34541048 2551416 complement(1442230..1443684) 1 NC_002950.2 similar to GB:M22488, GB:L35279, GB:L35278, SP:P13497, PID:619424, GB:M22488, GB:L35279, GB:L35278, SP:P13497, and PID:619424; identified by sequence similarity; putative; hypothetical protein 1443684 2551416 PG1362 Porphyromonas gingivalis W83 hypothetical protein NP_905527.1 1442230 R 242619 CDS NP_905528.1 34541049 2551535 1443944..1444219 1 NC_002950.2 hypothetical protein 1444219 2551535 PG1363 Porphyromonas gingivalis W83 hypothetical protein NP_905528.1 1443944 D 242619 CDS NP_905529.1 34541050 2551565 complement(1444478..1445635) 1 NC_002950.2 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1445635 dxr 2551565 dxr Porphyromonas gingivalis W83 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_905529.1 1444478 R 242619 CDS NP_905530.1 34541051 2551649 complement(1445632..1446159) 1 NC_002950.2 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1446159 rimM 2551649 rimM Porphyromonas gingivalis W83 16S rRNA-processing protein RimM NP_905530.1 1445632 R 242619 CDS NP_905531.1 34541052 2551563 complement(1446166..1447470) 1 NC_002950.2 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1447470 murA 2551563 murA Porphyromonas gingivalis W83 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_905531.1 1446166 R 242619 CDS NP_905532.1 34541053 2551687 complement(1447501..1448103) 1 NC_002950.2 hypothetical protein 1448103 2551687 PG1367 Porphyromonas gingivalis W83 hypothetical protein NP_905532.1 1447501 R 242619 CDS NP_905533.1 34541054 2551530 complement(1448123..1449460) 1 NC_002950.2 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1449460 pgi 2551530 pgi Porphyromonas gingivalis W83 glucose-6-phosphate isomerase NP_905533.1 1448123 R 242619 CDS NP_905534.1 34541055 2551533 complement(1449493..1450497) 1 NC_002950.2 glycerol-3-phosphate dehydrogenase 1450497 gpsA 2551533 gpsA Porphyromonas gingivalis W83 glycerol-3-phosphate dehydrogenase NP_905534.1 1449493 R 242619 CDS NP_905535.1 34541056 2551529 complement(1450583..1452319) 1 NC_002950.2 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1452319 lysS 2551529 lysS Porphyromonas gingivalis W83 lysyl-tRNA synthetase NP_905535.1 1450583 R 242619 CDS NP_905536.1 34541057 2551553 complement(1452442..1453320) 1 NC_002950.2 phosphorylase 1453320 2551553 PG1371 Porphyromonas gingivalis W83 phosphorylase NP_905536.1 1452442 R 242619 CDS NP_905537.1 34541058 2551930 complement(1453391..1454812) 1 NC_002950.2 hypothetical protein 1454812 2551930 PG1372 Porphyromonas gingivalis W83 hypothetical protein NP_905537.1 1453391 R 242619 CDS NP_905538.1 34541059 2551532 1454890..1455165 1 NC_002950.2 hypothetical protein 1455165 2551532 PG1373 Porphyromonas gingivalis W83 hypothetical protein NP_905538.1 1454890 D 242619 CDS NP_905539.1 34541060 2551898 complement(1455344..1456630) 1 NC_002950.2 hypothetical protein 1456630 2551898 PG1374 Porphyromonas gingivalis W83 hypothetical protein NP_905539.1 1455344 R 242619 CDS NP_905540.1 34541061 2551544 1456693..1456803 1 NC_002950.2 hypothetical protein 1456803 2551544 PG1375 Porphyromonas gingivalis W83 hypothetical protein NP_905540.1 1456693 D 242619 CDS NP_905541.1 34541062 2551560 complement(1457805..1459028) 1 NC_002950.2 A/G-specific adenine glycosylase 1459028 mutY 2551560 mutY Porphyromonas gingivalis W83 A/G-specific adenine glycosylase NP_905541.1 1457805 R 242619 CDS NP_905542.1 34541063 2551413 1459077..1460015 1 NC_002950.2 similar to SP:P37338, GB:U00096, PID:1789018, SP:P37338, GB:U00096, and PID:1789018; identified by sequence similarity; putative; ABC transporter periplasmic substrate-binding protein 1460015 2551413 PG1379 Porphyromonas gingivalis W83 ABC transporter periplasmic substrate-binding protein NP_905542.1 1459077 D 242619 CDS NP_905543.1 34541064 2551558 1460067..1460765 1 NC_002950.2 similar to SP:P37338, GB:U00096, and PID:1789018; identified by sequence similarity; putative; ABC transporter ATP-binding protein 1460765 2551558 PG1380 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905543.1 1460067 D 242619 CDS NP_905544.1 34541065 2551546 1460762..1461511 1 NC_002950.2 similar to SP:P37338, GB:U00096, and PID:1789018; identified by sequence similarity; putative; ABC transporter permease 1461511 2551546 PG1381 Porphyromonas gingivalis W83 ABC transporter permease NP_905544.1 1460762 D 242619 CDS NP_905545.1 34541066 2551755 1461471..1462610 1 NC_002950.2 hypothetical protein 1462610 2551755 PG1382 Porphyromonas gingivalis W83 hypothetical protein NP_905545.1 1461471 D 242619 CDS NP_905546.1 34541067 2551786 1462809..1463447 1 NC_002950.2 amino acid exporter 1463447 2551786 PG1383 Porphyromonas gingivalis W83 amino acid exporter NP_905546.1 1462809 D 242619 CDS NP_905547.1 34541068 2551783 complement(1465223..1466425) 1 NC_002950.2 hypothetical protein 1466425 2551783 PG1385 Porphyromonas gingivalis W83 hypothetical protein NP_905547.1 1465223 R 242619 CDS NP_905548.1 34541069 2551782 complement(1466459..1469038) 1 NC_002950.2 DNA gyrase subunit A 1469038 gyrA 2551782 gyrA Porphyromonas gingivalis W83 DNA gyrase subunit A NP_905548.1 1466459 R 242619 CDS NP_905549.1 34541070 2551781 complement(1469222..1470148) 1 NC_002950.2 similar to GB:L08575, and PID:415256; identified by sequence similarity; putative; hypothetical protein 1470148 2551781 PG1387 Porphyromonas gingivalis W83 hypothetical protein NP_905549.1 1469222 R 242619 CDS NP_905550.1 34541071 2551776 complement(1470185..1470979) 1 NC_002950.2 hypothetical protein 1470979 2551776 PG1388 Porphyromonas gingivalis W83 hypothetical protein NP_905550.1 1470185 R 242619 CDS NP_905551.1 34541072 2551774 complement(1470960..1471418) 1 NC_002950.2 histone-like family DNA-binding protein 1471418 2551774 PG1389 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_905551.1 1470960 R 242619 CDS NP_905552.1 34541073 2551772 1471810..1473021 1 NC_002950.2 hypothetical protein 1473021 2551772 PG1391 Porphyromonas gingivalis W83 hypothetical protein NP_905552.1 1471810 D 242619 CDS NP_905553.1 34541074 2551766 complement(1473049..1474506) 1 NC_002950.2 similar to GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, PID:32672, GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, and PID:32672; identified by sequence similarity; putative; rod shape-determining protein RodA 1474506 2551766 PG1392 Porphyromonas gingivalis W83 rod shape-determining protein RodA NP_905553.1 1473049 R 242619 CDS NP_905554.1 34541075 2551731 complement(1474496..1476361) 1 NC_002950.2 similar to GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; putative; penicillin-binding protein 2 1476361 2551731 PG1393 Porphyromonas gingivalis W83 penicillin-binding protein 2 NP_905554.1 1474496 R 242619 CDS NP_905555.1 34541076 2551748 complement(1476354..1476872) 1 NC_002950.2 hypothetical protein 1476872 2551748 PG1394 Porphyromonas gingivalis W83 hypothetical protein NP_905555.1 1476354 R 242619 CDS NP_905556.1 34541077 2551763 complement(1476872..1477759) 1 NC_002950.2 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1477759 2551763 PG1395 Porphyromonas gingivalis W83 rod shape-determining protein MreC NP_905556.1 1476872 R 242619 CDS NP_905557.1 34541078 2551753 complement(1477797..1478816) 1 NC_002950.2 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1478816 mreB 2551753 mreB Porphyromonas gingivalis W83 rod shape-determining protein MreB NP_905557.1 1477797 R 242619 CDS NP_905558.1 34541079 2551762 complement(1478919..1480445) 1 NC_002950.2 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1480445 purH 2551762 purH Porphyromonas gingivalis W83 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase NP_905558.1 1478919 R 242619 CDS NP_905559.1 34541080 2551761 1480834..1481007 1 NC_002950.2 hypothetical protein 1481007 2551761 PG1398 Porphyromonas gingivalis W83 hypothetical protein NP_905559.1 1480834 D 242619 CDS NP_905560.1 34541081 2551747 complement(1483489..1484868) 1 NC_002950.2 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 1484868 tnaA 2551747 tnaA Porphyromonas gingivalis W83 tryptophanase NP_905560.1 1483489 R 242619 CDS NP_905561.1 34541082 2551736 complement(1485121..1486053) 1 NC_002950.2 AP endonuclease domain-containing protein 1486053 2551736 PG1402 Porphyromonas gingivalis W83 AP endonuclease domain-containing protein NP_905561.1 1485121 R 242619 CDS NP_905562.1 34541083 2551745 complement(1486263..1487129) 1 NC_002950.2 rhomboid family protein 1487129 2551745 PG1403 Porphyromonas gingivalis W83 rhomboid family protein NP_905562.1 1486263 R 242619 CDS NP_905563.1 34541084 2551746 complement(1487161..1487877) 1 NC_002950.2 rhomboid family protein 1487877 2551746 PG1404 Porphyromonas gingivalis W83 rhomboid family protein NP_905563.1 1487161 R 242619 CDS NP_905564.1 34541085 2551744 complement(1487904..1490759) 1 NC_002950.2 hypothetical protein 1490759 2551744 PG1405 Porphyromonas gingivalis W83 hypothetical protein NP_905564.1 1487904 R 242619 CDS NP_905565.1 34541086 2551739 complement(1491202..1491738) 1 NC_002950.2 similar to GB:X16064, GB:L13806, SP:P13693, and PID:37496; identified by sequence similarity; putative; nitroimidazole resistance protein 1491738 2551739 PG1407 Porphyromonas gingivalis W83 nitroimidazole resistance protein NP_905565.1 1491202 R 242619 CDS NP_905566.1 34541087 2551733 1492001..1492966 1 NC_002950.2 CzcD family heavy metal efflux protein 1492966 2551733 PG1408 Porphyromonas gingivalis W83 CzcD family heavy metal efflux protein NP_905566.1 1492001 D 242619 CDS NP_905567.1 34541088 2551732 complement(1492963..1493355) 1 NC_002950.2 hypothetical protein 1493355 2551732 PG1409 Porphyromonas gingivalis W83 hypothetical protein NP_905567.1 1492963 R 242619 CDS NP_905568.1 34541089 2551743 1493401..1493496 1 NC_002950.2 hypothetical protein 1493496 2551743 PG1410 Porphyromonas gingivalis W83 hypothetical protein NP_905568.1 1493401 D 242619 CDS NP_905569.1 34541090 2551742 complement(1493571..1495256) 1 NC_002950.2 similar to GB:J04046, GB:X52606, GB:X52607, GB:X52608, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M19311, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M27319, GB:U11886, GB:U12022, GB:U16851, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, and PID:825635; identified by sequence similarity; putative; hypothetical protein 1495256 2551742 PG1411 Porphyromonas gingivalis W83 hypothetical protein NP_905569.1 1493571 R 242619 CDS NP_905570.1 34541091 2551740 1497149..1499764 1 NC_002950.2 hypothetical protein 1499764 2551740 PG1414 Porphyromonas gingivalis W83 hypothetical protein NP_905570.1 1497149 D 242619 CDS NP_905571.1 34541092 2551749 1500197..1501138 1 NC_002950.2 similar to GB:X54057, and PID:48509; identified by sequence similarity; putative; enoyl-ACP reductase 1501138 fabK 2551749 fabK Porphyromonas gingivalis W83 enoyl-ACP reductase NP_905571.1 1500197 D 242619 CDS NP_905572.1 34541093 2551692 1501435..1503081 1 NC_002950.2 similar to SP:P34210, and PID:550102; identified by sequence similarity; putative; fumarate hydratase class I, anaerobic 1503081 fumB 2551692 fumB Porphyromonas gingivalis W83 fumarate hydratase class I, anaerobic NP_905572.1 1501435 D 242619 CDS NP_905573.1 34541094 2551730 1503204..1505012 1 NC_002950.2 similar to GB:X04526, GB:M36430, SP:P04901, SP:P11016, PID:31669, and PID:339937; identified by sequence similarity; putative; DNA polymerase III subunits gamma and tau 1505012 dnaX 2551730 dnaX Porphyromonas gingivalis W83 DNA polymerase III subunits gamma and tau NP_905573.1 1503204 D 242619 CDS NP_905574.1 34541095 2552194 1505137..1505532 1 NC_002950.2 ISPg5, transposase Orf1 1505532 2552194 PG1419 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_905574.1 1505137 D 242619 CDS NP_905575.1 34541096 2552193 1505586..1506524 1 NC_002950.2 identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 1506524 2552193 PG1420 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_905575.1 1505586 D 242619 CDS NP_905576.1 34541097 2551502 complement(1506964..1507134) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00037; ferredoxin, 4Fe-4S 1507134 2551502 PG1421 Porphyromonas gingivalis W83 ferredoxin, 4Fe-4S NP_905576.1 1506964 R 242619 CDS NP_905577.1 34541098 2552117 complement(1507470..1509002) 1 NC_002950.2 similar to GB:L10393, SP:P08048, SP:P17010, and PID:340436; identified by sequence similarity; putative; D-alanyl-D-alanine carboxypeptidase 1509002 dacB 2552117 dacB Porphyromonas gingivalis W83 D-alanyl-D-alanine carboxypeptidase NP_905577.1 1507470 R 242619 CDS NP_905578.1 34541099 2552176 complement(1508981..1509178) 1 NC_002950.2 hypothetical protein 1509178 2552176 PG1423 Porphyromonas gingivalis W83 hypothetical protein NP_905578.1 1508981 R 242619 CDS NP_905579.1 34541100 2552184 complement(1509227..1510897) 1 NC_002950.2 peptidylarginine deiminase 1510897 2552184 PG1424 Porphyromonas gingivalis W83 peptidylarginine deiminase NP_905579.1 1509227 R 242619 CDS NP_905580.1 34541101 2552178 complement(1511242..1511400) 1 NC_002950.2 hypothetical protein 1511400 2552178 PG1426 Porphyromonas gingivalis W83 hypothetical protein NP_905580.1 1511242 R 242619 CDS NP_905581.1 34541102 2552172 complement(1511955..1514486) 1 NC_002950.2 thiol protease/hemagglutinin PrtT 1514486 2552172 PG1427 Porphyromonas gingivalis W83 thiol protease/hemagglutinin PrtT NP_905581.1 1511955 R 242619 CDS NP_905582.1 34541103 2552171 complement(1514627..1515112) 1 NC_002950.2 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1515112 ribH 2552171 ribH Porphyromonas gingivalis W83 6,7-dimethyl-8-ribityllumazine synthase NP_905582.1 1514627 R 242619 CDS NP_905583.1 34541104 2552170 complement(1515093..1515203) 1 NC_002950.2 hypothetical protein 1515203 2552170 PG1429 Porphyromonas gingivalis W83 hypothetical protein NP_905583.1 1515093 R 242619 CDS NP_905584.1 34541105 2552169 complement(1515204..1515890) 1 NC_002950.2 hypothetical protein 1515890 2552169 PG1430 Porphyromonas gingivalis W83 hypothetical protein NP_905584.1 1515204 R 242619 CDS NP_905585.1 34541106 2553375 complement(1516076..1516759) 1 NC_002950.2 LuxR family DNA-binding response regulator 1516759 2553375 PG1431 Porphyromonas gingivalis W83 LuxR family DNA-binding response regulator NP_905585.1 1516076 R 242619 CDS NP_905586.1 34541107 2553374 complement(1516824..1518689) 1 NC_002950.2 sensor histidine kinase 1518689 2553374 PG1432 Porphyromonas gingivalis W83 sensor histidine kinase NP_905586.1 1516824 R 242619 CDS NP_905587.1 34541108 2553367 1518971..1519186 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01280; hydrolase 1519186 2553367 PG1433 Porphyromonas gingivalis W83 hydrolase NP_905587.1 1518971 D 242619 CDS NP_905588.1 34541109 2553363 1519162..1519830 1 NC_002950.2 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1519830 ispD 2553363 ispD Porphyromonas gingivalis W83 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NP_905588.1 1519162 D 242619 CDS NP_905589.1 34541110 2553354 1520443..1521669 1 NC_002950.2 integrase 1521669 2553354 PG1435 Porphyromonas gingivalis W83 integrase NP_905589.1 1520443 D 242619 CDS NP_905590.1 34541111 2553351 1521796..1523814 1 NC_002950.2 ATPase 1523814 2553351 PG1436 Porphyromonas gingivalis W83 ATPase NP_905590.1 1521796 D 242619 CDS NP_905591.1 34541112 2553347 complement(1524675..1526750) 1 NC_002950.2 hypothetical protein 1526750 2553347 PG1439 Porphyromonas gingivalis W83 hypothetical protein NP_905591.1 1524675 R 242619 CDS NP_905592.1 34541113 2553341 complement(1526740..1527357) 1 NC_002950.2 hypothetical protein 1527357 2553341 PG1440 Porphyromonas gingivalis W83 hypothetical protein NP_905592.1 1526740 R 242619 CDS NP_905593.1 34541114 2553340 complement(1527448..1527615) 1 NC_002950.2 lysozyme-like protein 1527615 2553340 PG1441 Porphyromonas gingivalis W83 lysozyme-like protein NP_905593.1 1527448 R 242619 CDS NP_905594.1 34541115 2553339 complement(1527692..1528120) 1 NC_002950.2 hypothetical protein 1528120 2553339 PG1442 Porphyromonas gingivalis W83 hypothetical protein NP_905594.1 1527692 R 242619 CDS NP_905595.1 34541116 2553328 1528886..1529302 1 NC_002950.2 identified by match to PFAM protein family HMM PF02178; hypothetical protein 1529302 2553328 PG1444 Porphyromonas gingivalis W83 hypothetical protein NP_905595.1 1528886 D 242619 CDS NP_905596.1 34541117 2553326 complement(1529998..1531317) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein 1531317 2553326 PG1446 Porphyromonas gingivalis W83 MATE efflux family protein NP_905596.1 1529998 R 242619 CDS NP_905597.1 34541118 2553324 complement(1531453..1532301) 1 NC_002950.2 AraC family transcriptional regulator 1532301 2553324 PG1447 Porphyromonas gingivalis W83 AraC family transcriptional regulator NP_905597.1 1531453 R 242619 CDS NP_905598.1 34541119 2553304 1532424..1533509 1 NC_002950.2 ISPg1, transposase 1533509 2553304 PG1448 Porphyromonas gingivalis W83 ISPg1, transposase NP_905598.1 1532424 D 242619 CDS NP_905599.1 34541120 2553303 complement(1533672..1534352) 1 NC_002950.2 hypothetical protein 1534352 2553303 PG1449 Porphyromonas gingivalis W83 hypothetical protein NP_905599.1 1533672 R 242619 CDS NP_905600.1 34541121 2553299 complement(1534390..1534704) 1 NC_002950.2 similar to GB:L25896, PID:451865, GB:L25896, and PID:451865; identified by sequence similarity; putative; hypothetical protein 1534704 2553299 PG1450 Porphyromonas gingivalis W83 hypothetical protein NP_905600.1 1534390 R 242619 CDS NP_905601.1 34541122 2553295 1534837..1535244 1 NC_002950.2 hypothetical protein 1535244 2553295 PG1451 Porphyromonas gingivalis W83 hypothetical protein NP_905601.1 1534837 D 242619 CDS NP_905602.1 34541123 2553293 complement(1535370..1535732) 1 NC_002950.2 putative lipoprotein 1535732 2553293 PG1452 Porphyromonas gingivalis W83 putative lipoprotein NP_905602.1 1535370 R 242619 CDS NP_905603.1 34541124 2553285 complement(1535739..1536941) 1 NC_002950.2 integrase 1536941 2553285 PG1453 Porphyromonas gingivalis W83 integrase NP_905603.1 1535739 R 242619 CDS NP_905604.1 34541125 2553284 complement(1536967..1538196) 1 NC_002950.2 integrase 1538196 2553284 PG1454 Porphyromonas gingivalis W83 integrase NP_905604.1 1536967 R 242619 CDS NP_905605.1 34541126 2553278 1538790..1539257 1 NC_002950.2 hypothetical protein 1539257 2553278 PG1457 Porphyromonas gingivalis W83 hypothetical protein NP_905605.1 1538790 D 242619 CDS NP_905606.1 34541127 2553272 1539284..1539742 1 NC_002950.2 hypothetical protein 1539742 2553272 PG1458 Porphyromonas gingivalis W83 hypothetical protein NP_905606.1 1539284 D 242619 CDS NP_905607.1 34541128 2553271 complement(1539722..1539859) 1 NC_002950.2 hypothetical protein 1539859 2553271 PG1459 Porphyromonas gingivalis W83 hypothetical protein NP_905607.1 1539722 R 242619 CDS NP_905608.1 34541129 2553269 1540100..1540459 1 NC_002950.2 hypothetical protein 1540459 2553269 PG1460 Porphyromonas gingivalis W83 hypothetical protein NP_905608.1 1540100 D 242619 CDS NP_905609.1 34541130 2553268 1540466..1540987 1 NC_002950.2 hypothetical protein 1540987 2553268 PG1461 Porphyromonas gingivalis W83 hypothetical protein NP_905609.1 1540466 D 242619 CDS NP_905610.1 34541131 2553264 1541000..1541227 1 NC_002950.2 similar to SP:P34001, and PID:1196943; identified by sequence similarity; putative; hypothetical protein 1541227 2553264 PG1462 Porphyromonas gingivalis W83 hypothetical protein NP_905610.1 1541000 D 242619 CDS NP_905611.1 34541132 2552156 1541250..1541531 1 NC_002950.2 hypothetical protein 1541531 2552156 PG1463 Porphyromonas gingivalis W83 hypothetical protein NP_905611.1 1541250 D 242619 CDS NP_905612.1 34541133 2552153 1542122..1542766 1 NC_002950.2 hypothetical protein 1542766 2552153 PG1465 Porphyromonas gingivalis W83 hypothetical protein NP_905612.1 1542122 D 242619 CDS NP_905613.1 34541134 2552151 1542763..1543335 1 NC_002950.2 hypothetical protein 1543335 2552151 PG1466 Porphyromonas gingivalis W83 hypothetical protein NP_905613.1 1542763 D 242619 CDS NP_905614.1 34541135 2553260 1543350..1543961 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01934; UbiE/COQ5 family methlytransferase 1543961 2553260 PG1467 Porphyromonas gingivalis W83 UbiE/COQ5 family methlytransferase NP_905614.1 1543350 D 242619 CDS NP_905615.1 34541136 2553256 complement(1545080..1548088) 1 NC_002950.2 type I restriction-modification system, M subunit 1548088 2553256 PG1469 Porphyromonas gingivalis W83 type I restriction-modification system, M subunit NP_905615.1 1545080 R 242619 CDS NP_905616.1 34541137 2553255 1548261..1548491 1 NC_002950.2 hypothetical protein 1548491 2553255 PG1470 Porphyromonas gingivalis W83 hypothetical protein NP_905616.1 1548261 D 242619 CDS NP_905617.1 34541138 2553250 1548671..1549138 1 NC_002950.2 similar to GB:L22647, SP:P34995, and PID:410209; identified by sequence similarity; putative; hypothetical protein 1549138 2553250 PG1471 Porphyromonas gingivalis W83 hypothetical protein NP_905617.1 1548671 D 242619 CDS NP_905618.1 34541139 2553249 1549173..1549820 1 NC_002950.2 hypothetical protein 1549820 2553249 PG1472 Porphyromonas gingivalis W83 hypothetical protein NP_905618.1 1549173 D 242619 CDS NP_905619.1 34541140 2553248 complement(1549851..1550315) 1 NC_002950.2 conjugative transposon protein TraQ 1550315 2553248 PG1473 Porphyromonas gingivalis W83 conjugative transposon protein TraQ NP_905619.1 1549851 R 242619 CDS NP_905620.1 34541141 2553245 complement(1550328..1550906) 1 NC_002950.2 conjugative transposon protein TraO 1550906 2553245 PG1474 Porphyromonas gingivalis W83 conjugative transposon protein TraO NP_905620.1 1550328 R 242619 CDS NP_905621.1 34541142 2553241 complement(1550900..1551925) 1 NC_002950.2 conjugative transposon protein TraN 1551925 2553241 PG1475 Porphyromonas gingivalis W83 conjugative transposon protein TraN NP_905621.1 1550900 R 242619 CDS NP_905622.1 34541143 2553238 complement(1551948..1553309) 1 NC_002950.2 conjugative transposon protein TraM 1553309 2553238 PG1476 Porphyromonas gingivalis W83 conjugative transposon protein TraM NP_905622.1 1551948 R 242619 CDS NP_905623.1 34541144 2553234 complement(1553299..1553586) 1 NC_002950.2 hypothetical protein 1553586 2553234 PG1477 Porphyromonas gingivalis W83 hypothetical protein NP_905623.1 1553299 R 242619 CDS NP_905624.1 34541145 2553231 complement(1553583..1554206) 1 NC_002950.2 conjugative transposon protein TraK 1554206 2553231 PG1478 Porphyromonas gingivalis W83 conjugative transposon protein TraK NP_905624.1 1553583 R 242619 CDS NP_905625.1 34541146 2553222 complement(1554218..1555324) 1 NC_002950.2 conjugative transposon protein TraJ 1555324 2553222 PG1479 Porphyromonas gingivalis W83 conjugative transposon protein TraJ NP_905625.1 1554218 R 242619 CDS NP_905626.1 34541147 2553219 complement(1555356..1555985) 1 NC_002950.2 conjugative transposon protein TraI 1555985 2553219 PG1480 Porphyromonas gingivalis W83 conjugative transposon protein TraI NP_905626.1 1555356 R 242619 CDS NP_905627.1 34541148 2553215 complement(1556012..1558537) 1 NC_002950.2 conjugative transposon protein TraG 1558537 2553215 PG1481 Porphyromonas gingivalis W83 conjugative transposon protein TraG NP_905627.1 1556012 R 242619 CDS NP_905628.1 34541149 2553214 complement(1558534..1558869) 1 NC_002950.2 conjugative transposon protein TraF 1558869 2553214 PG1482 Porphyromonas gingivalis W83 conjugative transposon protein TraF NP_905628.1 1558534 R 242619 CDS NP_905629.1 34541150 2553212 complement(1558873..1559175) 1 NC_002950.2 conjugative transposon protein TraE 1559175 2553212 PG1483 Porphyromonas gingivalis W83 conjugative transposon protein TraE NP_905629.1 1558873 R 242619 CDS NP_905630.1 34541151 2553206 complement(1559365..1560069) 1 NC_002950.2 hypothetical protein 1560069 2553206 PG1484 Porphyromonas gingivalis W83 hypothetical protein NP_905630.1 1559365 R 242619 CDS NP_905631.1 34541152 2553209 complement(1560074..1560460) 1 NC_002950.2 conjugative transposon protein TraC 1560460 2553209 PG1485 Porphyromonas gingivalis W83 conjugative transposon protein TraC NP_905631.1 1560074 R 242619 CDS NP_905632.1 34541153 2553200 complement(1560447..1561256) 1 NC_002950.2 conjugative transposon protein TraA 1561256 2553200 PG1486 Porphyromonas gingivalis W83 conjugative transposon protein TraA NP_905632.1 1560447 R 242619 CDS NP_905633.1 34541154 2553195 1561608..1561859 1 NC_002950.2 hypothetical protein 1561859 2553195 PG1487 Porphyromonas gingivalis W83 hypothetical protein NP_905633.1 1561608 D 242619 CDS NP_905634.1 34541155 2552140 1561887..1562288 1 NC_002950.2 hypothetical protein 1562288 2552140 PG1488 Porphyromonas gingivalis W83 hypothetical protein NP_905634.1 1561887 D 242619 CDS NP_905635.1 34541156 2552137 1562273..1563553 1 NC_002950.2 hypothetical protein 1563553 2552137 PG1489 Porphyromonas gingivalis W83 hypothetical protein NP_905635.1 1562273 D 242619 CDS NP_905636.1 34541157 2552136 1563555..1565564 1 NC_002950.2 TraG family protein 1565564 2552136 PG1490 Porphyromonas gingivalis W83 TraG family protein NP_905636.1 1563555 D 242619 CDS NP_905637.1 34541158 2552133 1565881..1566093 1 NC_002950.2 hypothetical protein 1566093 2552133 PG1491 Porphyromonas gingivalis W83 hypothetical protein NP_905637.1 1565881 D 242619 CDS NP_905638.1 34541159 2552128 1566190..1566906 1 NC_002950.2 hypothetical protein 1566906 2552128 PG1492 Porphyromonas gingivalis W83 hypothetical protein NP_905638.1 1566190 D 242619 CDS NP_905639.1 34541160 2552126 1566923..1569598 1 NC_002950.2 hypothetical protein 1569598 2552126 PG1493 Porphyromonas gingivalis W83 hypothetical protein NP_905639.1 1566923 D 242619 CDS NP_905640.1 34541161 2553194 1569981..1571294 1 NC_002950.2 similar to GP:16549048; identified by sequence similarity; putative; hypothetical protein 1571294 2553194 PG1494 Porphyromonas gingivalis W83 hypothetical protein NP_905640.1 1569981 D 242619 CDS NP_905641.1 34541162 2553189 1571383..1573476 1 NC_002950.2 similar to SP:P33446, GB:X64876, and PID:313842; identified by sequence similarity; putative; DNA topoisomerase III 1573476 topB-2 2553189 topB-2 Porphyromonas gingivalis W83 DNA topoisomerase III NP_905641.1 1571383 D 242619 CDS NP_905642.1 34541163 2553186 1573482..1573757 1 NC_002950.2 hypothetical protein 1573757 2553186 PG1496 Porphyromonas gingivalis W83 hypothetical protein NP_905642.1 1573482 D 242619 CDS NP_905643.1 34541164 2553180 1574225..1574695 1 NC_002950.2 histone-like family DNA-binding protein 1574695 2553180 PG1497 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_905643.1 1574225 D 242619 CDS NP_905644.1 34541165 2553178 1574796..1575710 1 NC_002950.2 hypothetical protein 1575710 2553178 PG1498 Porphyromonas gingivalis W83 hypothetical protein NP_905644.1 1574796 D 242619 CDS NP_905645.1 34541166 2553174 1575664..1576161 1 NC_002950.2 hypothetical protein 1576161 2553174 PG1499 Porphyromonas gingivalis W83 hypothetical protein NP_905645.1 1575664 D 242619 CDS NP_905646.1 34541167 2553171 1576239..1578530 1 NC_002950.2 hypothetical protein 1578530 2553171 PG1500 Porphyromonas gingivalis W83 hypothetical protein NP_905646.1 1576239 D 242619 CDS NP_905647.1 34541168 2553167 complement(1578590..1579189) 1 NC_002950.2 TetR family transcriptional regulator 1579189 2553167 PG1501 Porphyromonas gingivalis W83 TetR family transcriptional regulator NP_905647.1 1578590 R 242619 CDS NP_905648.1 34541169 2553163 1580365..1581315 1 NC_002950.2 similar to GB:M59757, SP:P25996, PID:143392, and GB:AL009126; identified by sequence similarity; putative; LytB-like protein 1581315 2553163 PG1503 Porphyromonas gingivalis W83 LytB-like protein NP_905648.1 1580365 D 242619 CDS NP_905649.1 34541170 2553158 1581333..1582319 1 NC_002950.2 NAD dependent protein 1582319 2553158 PG1504 Porphyromonas gingivalis W83 NAD dependent protein NP_905649.1 1581333 D 242619 CDS NP_905650.1 34541171 2553151 1582383..1583261 1 NC_002950.2 similar to SP:P29201, and PID:148781; identified by sequence similarity; putative; radical SAM domain-containing protein 1583261 2553151 PG1505 Porphyromonas gingivalis W83 radical SAM domain-containing protein NP_905650.1 1582383 D 242619 CDS NP_905651.1 34541172 2553149 1583760..1586189 1 NC_002950.2 hypothetical protein 1586189 2553149 PG1507 Porphyromonas gingivalis W83 hypothetical protein NP_905651.1 1583760 D 242619 CDS NP_905652.1 34541173 2553142 1586200..1586748 1 NC_002950.2 hypothetical protein 1586748 2553142 PG1508 Porphyromonas gingivalis W83 hypothetical protein NP_905652.1 1586200 D 242619 CDS NP_905653.1 34541174 2553143 1586831..1587499 1 NC_002950.2 similar to GB:Z18899, GB:Z29633, PID:499594, PID:505400, and PID:553410; identified by sequence similarity; putative; HAD superfamily hydrolase 1587499 2553143 PG1509 Porphyromonas gingivalis W83 HAD superfamily hydrolase NP_905653.1 1586831 D 242619 CDS NP_905654.1 34541175 2553139 complement(1587519..1587626) 1 NC_002950.2 hypothetical protein 1587626 2553139 PG1510 Porphyromonas gingivalis W83 hypothetical protein NP_905654.1 1587519 R 242619 CDS NP_905655.1 34541176 2553127 1587749..1587910 1 NC_002950.2 hypothetical protein 1587910 2553127 PG1511 Porphyromonas gingivalis W83 hypothetical protein NP_905655.1 1587749 D 242619 CDS NP_905656.1 34541177 2553113 complement(1587903..1588520) 1 NC_002950.2 hypothetical protein 1588520 2553113 PG1512 Porphyromonas gingivalis W83 hypothetical protein NP_905656.1 1587903 R 242619 CDS NP_905657.1 34541178 2553122 1588609..1589925 1 NC_002950.2 phosphoribosyltransferase /phosphoglycerate mutase 1589925 2553122 PG1513 Porphyromonas gingivalis W83 phosphoribosyltransferase /phosphoglycerate mutase NP_905657.1 1588609 D 242619 CDS NP_905658.1 34541179 2552111 1589940..1590929 1 NC_002950.2 glycerol dehydrogenase 1590929 2552111 PG1514 Porphyromonas gingivalis W83 glycerol dehydrogenase NP_905658.1 1589940 D 242619 CDS NP_905659.1 34541180 2552109 1590917..1591930 1 NC_002950.2 similar to SP:P15756, and PID:43545; identified by sequence similarity; putative; ribulose bisphosphate carboxylase-like protein 1591930 2552109 PG1515 Porphyromonas gingivalis W83 ribulose bisphosphate carboxylase-like protein NP_905659.1 1590917 D 242619 CDS NP_905660.1 34541181 2552105 1591881..1593257 1 NC_002950.2 hypothetical protein 1593257 2552105 PG1516 Porphyromonas gingivalis W83 hypothetical protein NP_905660.1 1591881 D 242619 CDS NP_905661.1 34541182 2553103 1595845..1597485 1 NC_002950.2 hypothetical protein 1597485 2553103 PG1519 Porphyromonas gingivalis W83 hypothetical protein NP_905661.1 1595845 D 242619 CDS NP_905662.1 34541183 2553101 complement(1598144..1599193) 1 NC_002950.2 similar to GB:L03728, SP:P22993, PID:147103, PID:152544, GB:X59798, GB:M73554, GB:S71637, SP:P24385, PID:179365, PID:181245, PID:307345, PID:312912, PID:35632, and PID:483601; identified by sequence similarity; putative; O-succinylbenzoic acid--CoA ligase 1599193 2553101 PG1521 Porphyromonas gingivalis W83 O-succinylbenzoic acid--CoA ligase NP_905662.1 1598144 R 242619 CDS NP_905663.1 34541184 2553098 complement(1599190..1600260) 1 NC_002950.2 mandelate racemase/muconate lactonizing enzyme family protein 1600260 2553098 PG1522 Porphyromonas gingivalis W83 mandelate racemase/muconate lactonizing enzyme family protein NP_905663.1 1599190 R 242619 CDS NP_905664.1 34541185 2553097 complement(1600260..1601078) 1 NC_002950.2 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 1601078 menB 2553097 menB Porphyromonas gingivalis W83 naphthoate synthase NP_905664.1 1600260 R 242619 CDS NP_905665.1 34541186 2553091 complement(1601103..1602836) 1 NC_002950.2 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1602836 menD 2553091 menD Porphyromonas gingivalis W83 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase NP_905665.1 1601103 R 242619 CDS NP_905666.1 34541187 2553092 complement(1602849..1603955) 1 NC_002950.2 similar to GB:X73039, SP:P35715, SP:P35717, SP:P48431, PID:312152, PID:854182, PID:938229, and PID:938234; identified by sequence similarity; putative; isochorismate synthase 1603955 2553092 PG1525 Porphyromonas gingivalis W83 isochorismate synthase NP_905666.1 1602849 R 242619 CDS NP_905667.1 34541188 2553087 complement(1604022..1605461) 1 NC_002950.2 hypothetical protein 1605461 2553087 PG1526 Porphyromonas gingivalis W83 hypothetical protein NP_905667.1 1604022 R 242619 CDS NP_905668.1 34541189 2553079 complement(1605657..1605884) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01764; hypothetical protein 1605884 2553079 PG1527 Porphyromonas gingivalis W83 hypothetical protein NP_905668.1 1605657 R 242619 CDS NP_905669.1 34541190 2553077 1605923..1607248 1 NC_002950.2 similar to GB:M98252, GB:L06419, SP:Q02809, and PID:190074; identified by sequence similarity; putative; hypothetical protein 1607248 2553077 PG1528 Porphyromonas gingivalis W83 hypothetical protein NP_905669.1 1605923 D 242619 CDS NP_905670.1 34541191 2553075 1607375..1609513 1 NC_002950.2 hypothetical protein 1609513 2553075 PG1529 Porphyromonas gingivalis W83 hypothetical protein NP_905670.1 1607375 D 242619 CDS NP_905671.1 34541192 2553073 1609510..1610400 1 NC_002950.2 similar to GB:U14003, SP:P33999, PID:537214, GB:U00096, and PID:1790833; identified by sequence similarity; putative; hypothetical protein 1610400 2553073 PG1530 Porphyromonas gingivalis W83 hypothetical protein NP_905671.1 1609510 D 242619 CDS NP_905672.1 34541193 2553069 complement(1611612..1611806) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01764; hypothetical protein 1611806 2553069 PG1532 Porphyromonas gingivalis W83 hypothetical protein NP_905672.1 1611612 R 242619 CDS NP_905673.1 34541194 2553056 complement(1611803..1613851) 1 NC_002950.2 TOPRIM domain-containing protein 1613851 2553056 PG1533 Porphyromonas gingivalis W83 TOPRIM domain-containing protein NP_905673.1 1611803 R 242619 CDS NP_905674.1 34541195 2553065 complement(1613848..1614237) 1 NC_002950.2 similar to GB:U02141, GB:X61535, GB:L43967, SP:P47474, PID:406334, PID:1045921, GB:U14003, SP:P39390, PID:537182, GB:U00096, and PID:1790798; identified by sequence similarity; putative; hypothetical protein 1614237 2553065 PG1534 Porphyromonas gingivalis W83 hypothetical protein NP_905674.1 1613848 R 242619 CDS NP_905675.1 34541196 2553057 complement(1614240..1614581) 1 NC_002950.2 transcriptional regulator 1614581 2553057 PG1535 Porphyromonas gingivalis W83 transcriptional regulator NP_905675.1 1614240 R 242619 CDS NP_905676.1 34541197 2553054 1616502..1617389 1 NC_002950.2 cell division protein FtsX 1617389 2553054 PG1536 Porphyromonas gingivalis W83 cell division protein FtsX NP_905676.1 1616502 D 242619 CDS NP_905677.1 34541198 2553049 1617364..1617663 1 NC_002950.2 hypothetical protein 1617663 2553049 PG1537 Porphyromonas gingivalis W83 hypothetical protein NP_905677.1 1617364 D 242619 CDS NP_905678.1 34541199 2553042 1617771..1618613 1 NC_002950.2 undecaprenol kinase 1618613 2553042 PG1538 Porphyromonas gingivalis W83 undecaprenol kinase NP_905678.1 1617771 D 242619 CDS NP_905679.1 34541200 2553036 1619417..1620469 1 NC_002950.2 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1620469 queA 2553036 queA Porphyromonas gingivalis W83 S-adenosylmethionine--tRNA ribosyltransferase-isomerase NP_905679.1 1619417 D 242619 CDS NP_905680.1 34541201 2553032 1620466..1620915 1 NC_002950.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1620915 folK 2553032 folK Porphyromonas gingivalis W83 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase NP_905680.1 1620466 D 242619 CDS NP_905681.1 34541202 2553029 1620928..1622172 1 NC_002950.2 collagenase 1622172 prtC 2553029 prtC Porphyromonas gingivalis W83 collagenase NP_905681.1 1620928 D 242619 CDS NP_905682.1 34541203 2553028 1622228..1622647 1 NC_002950.2 thioesterase 1622647 2553028 PG1543 Porphyromonas gingivalis W83 thioesterase NP_905682.1 1622228 D 242619 CDS NP_905683.1 34541204 2553025 1622732..1623502 1 NC_002950.2 similar to GB:J03071, GB:A00501, GB:V00519, GB:M13438, GB:V00520, GB:J00148, GB:A12770, GB:A15072, GB:M14398, SP:P01241, SP:P01243, PID:183147, PID:183159, PID:490144, PID:512406, GB:J03071, GB:A00501, GB:V00519, GB:M13438, GB:V00520, GB:J00148, GB:A12770, GB:A15072, GB:M14398, SP:P01241, SP:P01243, PID:183147, PID:183159, PID:490144, and PID:512406; identified by sequence similarity; putative; hypothetical protein 1623502 yaaA 2553025 yaaA Porphyromonas gingivalis W83 hypothetical protein NP_905683.1 1622732 D 242619 CDS NP_905684.1 34541205 2553021 1623640..1624215 1 NC_002950.2 similar to GB:M64355, GB:D13074, GB:L06880, PID:2358061, PID:292767, PID:339329, PID:407739, PID:619777, PID:975606, GB:M64355, GB:D13074, GB:L06880, PID:2358061, PID:292767, PID:339329, PID:407739, PID:619777, and PID:975606; identified by sequence similarity; putative; superoxide dismutase, Fe-Mn 1624215 sodB 2553021 sodB Porphyromonas gingivalis W83 superoxide dismutase, Fe-Mn NP_905684.1 1623640 D 242619 CDS NP_905685.1 34541206 2553012 1624227..1624415 1 NC_002950.2 hypothetical protein 1624415 2553012 PG1546 Porphyromonas gingivalis W83 hypothetical protein NP_905685.1 1624227 D 242619 CDS NP_905686.1 34541207 2553013 1624402..1624755 1 NC_002950.2 similar to GB:X77383, SP:P43234, and PID:574804; identified by sequence similarity; putative; hypothetical protein 1624755 2553013 PG1547 Porphyromonas gingivalis W83 hypothetical protein NP_905686.1 1624402 D 242619 CDS NP_905687.1 34541208 2552093 complement(1627897..1628037) 1 NC_002950.2 hypothetical protein 1628037 2552093 PG1549 Porphyromonas gingivalis W83 hypothetical protein NP_905687.1 1627897 R 242619 CDS NP_905688.1 34541209 2552090 1628578..1629006 1 NC_002950.2 hmuY protein 1629006 hmuY 2552090 hmuY Porphyromonas gingivalis W83 hmuY protein NP_905688.1 1628578 D 242619 CDS NP_905689.1 34541210 2552088 1629021..1630961 1 NC_002950.2 TonB-dependent receptor HmuR 1630961 hmuR 2552088 hmuR Porphyromonas gingivalis W83 TonB-dependent receptor HmuR NP_905689.1 1629021 D 242619 CDS NP_905690.1 34541211 2552083 1630998..1635407 1 NC_002950.2 similar to SP:P17430, GB:X52093, GB:X52950, and PID:47743; identified by sequence similarity; putative; CobN/magnesium chelatase 1635407 2552083 PG1553 Porphyromonas gingivalis W83 CobN/magnesium chelatase NP_905690.1 1630998 D 242619 CDS NP_905691.1 34541212 2552081 1635404..1636081 1 NC_002950.2 hypothetical protein 1636081 2552081 PG1554 Porphyromonas gingivalis W83 hypothetical protein NP_905691.1 1635404 D 242619 CDS NP_905692.1 34541213 2552080 1636151..1636729 1 NC_002950.2 similar to SP:P36563, PID:434583, PID:466739, GB:U00096, PID:1790029, SP:P36563, PID:434583, PID:466739, GB:U00096, and PID:1790029; identified by sequence similarity; putative; hypothetical protein 1636729 2552080 PG1555 Porphyromonas gingivalis W83 hypothetical protein NP_905692.1 1636151 D 242619 CDS NP_905693.1 34541214 2552079 1636735..1637061 1 NC_002950.2 hypothetical protein 1637061 2552079 PG1556 Porphyromonas gingivalis W83 hypothetical protein NP_905693.1 1636735 D 242619 CDS NP_905694.1 34541215 2553006 complement(1637994..1639082) 1 NC_002950.2 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1639082 gcvT 2553006 gcvT Porphyromonas gingivalis W83 glycine cleavage system aminomethyltransferase T NP_905694.1 1637994 R 242619 CDS NP_905695.1 34541216 2553005 complement(1639157..1640221) 1 NC_002950.2 similar to SP:P02345, GB:X04500, GB:M15330, GB:K02770, GB:M54933, GB:X02532, GB:X56087, GB:X52431, GB:M15840, SP:P01584, PID:186288, PID:307043, PID:307045, PID:312408, PID:33790, PID:35663, and PID:386816; identified by sequence similarity; putative; dTDP-glucose 4,6-dehydratase 1640221 rfbB 2553005 rfbB Porphyromonas gingivalis W83 dTDP-glucose 4,6-dehydratase NP_905695.1 1639157 R 242619 CDS NP_905696.1 34541217 2552996 complement(1640228..1641085) 1 NC_002950.2 dTDP-4-dehydrorhamnose reductase 1641085 rfbD 2552996 rfbD Porphyromonas gingivalis W83 dTDP-4-dehydrorhamnose reductase NP_905696.1 1640228 R 242619 CDS NP_905697.1 34541218 2552991 complement(1641082..1641672) 1 NC_002950.2 dTDP-4-dehydrorhamnose 3,5-epimerase 1641672 rfbC 2552991 rfbC Porphyromonas gingivalis W83 dTDP-4-dehydrorhamnose 3,5-epimerase NP_905697.1 1641082 R 242619 CDS NP_905698.1 34541219 2552987 complement(1641687..1642556) 1 NC_002950.2 similar to GB:X69292, GB:S67240, SP:P35749, PID:2104553, PID:2352947, and PID:36507; identified by sequence similarity; putative; glucose-1-phosphate thymidylyltransferase 1642556 rfbA 2552987 rfbA Porphyromonas gingivalis W83 glucose-1-phosphate thymidylyltransferase NP_905698.1 1641687 R 242619 CDS NP_905699.1 34541220 2552985 complement(1642671..1644626) 1 NC_002950.2 hypothetical protein 1644626 2552985 PG1564 Porphyromonas gingivalis W83 hypothetical protein NP_905699.1 1642671 R 242619 CDS NP_905700.1 34541221 2552980 complement(1644711..1645949) 1 NC_002950.2 similar to GB:J05243, GB:M18627, GB:M19725, GB:M24773, GB:X86901, GB:U26396, SP:Q13813, PID:178426, PID:179106, PID:1805280, PID:537331, PID:829111, PID:836669, GB:J05243, GB:M18627, GB:M19725, GB:M24773, GB:X86901, GB:U26396, SP:Q13813, PID:178426, PID:179106, PID:1805280, PID:537331, PID:829111, and PID:836669; identified by sequence similarity; putative; 3-deoxy-D-manno-octulosonic-acid transferase 1645949 2552980 PG1565 Porphyromonas gingivalis W83 3-deoxy-D-manno-octulosonic-acid transferase NP_905700.1 1644711 R 242619 CDS NP_905701.1 34541222 2552976 complement(1645974..1647491) 1 NC_002950.2 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1647491 gltX 2552976 gltX Porphyromonas gingivalis W83 glutamyl-tRNA synthetase NP_905701.1 1645974 R 242619 CDS NP_905702.1 34541223 2552972 complement(1648672..1649055) 1 NC_002950.2 rhodanese-like domain-containing protein 1649055 2552972 PG1570 Porphyromonas gingivalis W83 rhodanese-like domain-containing protein NP_905702.1 1648672 R 242619 CDS NP_905703.1 34541224 2552967 complement(1649028..1650443) 1 NC_002950.2 similar to GB:X80061, and PID:510823; identified by sequence similarity; putative; metallo-beta-lactamase superfamily protein 1650443 2552967 PG1571 Porphyromonas gingivalis W83 metallo-beta-lactamase superfamily protein NP_905703.1 1649028 R 242619 CDS NP_905704.1 34541225 2552960 complement(1650536..1651342) 1 NC_002950.2 similar to SP:P25006, PID:1125639, SP:P25006, and PID:1125639; identified by sequence similarity; putative; hypothetical protein 1651342 2552960 PG1572 Porphyromonas gingivalis W83 hypothetical protein NP_905704.1 1650536 R 242619 CDS NP_905705.1 34541226 2552959 complement(1651407..1652258) 1 NC_002950.2 Crp family transcriptional regulator 1652258 2552959 PG1573 Porphyromonas gingivalis W83 Crp family transcriptional regulator NP_905705.1 1651407 R 242619 CDS NP_905706.1 34541227 2552958 complement(1652551..1652703) 1 NC_002950.2 hypothetical protein 1652703 2552958 PG1574 Porphyromonas gingivalis W83 hypothetical protein NP_905706.1 1652551 R 242619 CDS NP_905707.1 34541228 2552955 1653156..1654712 1 NC_002950.2 L-aspartate oxidase 1654712 nadB 2552955 nadB Porphyromonas gingivalis W83 L-aspartate oxidase NP_905707.1 1653156 D 242619 CDS NP_905708.1 34541229 2552952 1654759..1655586 1 NC_002950.2 nicotinate-nucleotide pyrophosphorylase 1655586 nadC 2552952 nadC Porphyromonas gingivalis W83 nicotinate-nucleotide pyrophosphorylase NP_905708.1 1654759 D 242619 CDS NP_905709.1 34541230 2552949 1655606..1656532 1 NC_002950.2 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1656532 nadA 2552949 nadA Porphyromonas gingivalis W83 quinolinate synthetase NP_905709.1 1655606 D 242619 CDS NP_905710.1 34541231 2552941 1656633..1657628 1 NC_002950.2 similar to GB:L14437, SP:P39809, PID:451869, PID:1762336, and GB:AL009126; identified by sequence similarity; putative; MoxR family ATPase 1657628 2552941 PG1579 Porphyromonas gingivalis W83 MoxR family ATPase NP_905710.1 1656633 D 242619 CDS NP_905711.1 34541232 2552935 1657639..1658511 1 NC_002950.2 similar to SP:P29134, and SP:P29134; identified by sequence similarity; putative; hypothetical protein 1658511 2552935 PG1580 Porphyromonas gingivalis W83 hypothetical protein NP_905711.1 1657639 D 242619 CDS NP_905712.1 34541233 2552040 1658508..1659464 1 NC_002950.2 hypothetical protein 1659464 2552040 PG1581 Porphyromonas gingivalis W83 hypothetical protein NP_905712.1 1658508 D 242619 CDS NP_905713.1 34541234 2552068 1659461..1660444 1 NC_002950.2 batA protein 1660444 batA 2552068 batA Porphyromonas gingivalis W83 batA protein NP_905713.1 1659461 D 242619 CDS NP_905714.1 34541235 2552067 1660455..1661474 1 NC_002950.2 batB protein 1661474 batB 2552067 batB Porphyromonas gingivalis W83 batB protein NP_905714.1 1660455 D 242619 CDS NP_905715.1 34541236 2552063 1661471..1662214 1 NC_002950.2 batC protein 1662214 batC 2552063 batC Porphyromonas gingivalis W83 batC protein NP_905715.1 1661471 D 242619 CDS NP_905716.1 34541237 2552058 1662395..1664197 1 NC_002950.2 batD protein 1664197 batD 2552058 batD Porphyromonas gingivalis W83 batD protein NP_905716.1 1662395 D 242619 CDS NP_905717.1 34541238 2552051 1664194..1665102 1 NC_002950.2 batE protein 1665102 batE 2552051 batE Porphyromonas gingivalis W83 batE protein NP_905717.1 1664194 D 242619 CDS NP_905718.1 34541239 2552049 1665123..1665839 1 NC_002950.2 PAP2 superfamily protein 1665839 2552049 PG1587 Porphyromonas gingivalis W83 PAP2 superfamily protein NP_905718.1 1665123 D 242619 CDS NP_905719.1 34541240 2552046 complement(1665855..1666622) 1 NC_002950.2 hypothetical protein 1666622 2552046 PG1588 Porphyromonas gingivalis W83 hypothetical protein NP_905719.1 1665855 R 242619 CDS NP_905720.1 34541241 2552920 complement(1666683..1667528) 1 NC_002950.2 similar to GB:M60178, SP:P22865, PID:149525, and PID:512521; identified by sequence similarity; putative; dihydropteroate synthase 1667528 folP 2552920 folP Porphyromonas gingivalis W83 dihydropteroate synthase NP_905720.1 1666683 R 242619 CDS NP_905721.1 34541242 2552922 1668057..1669154 1 NC_002950.2 similar to GP:19917917, SP:P25889, GB:U00096, and PID:1788469; identified by sequence similarity; putative; hypothetical protein 1669154 2552922 PG1591 Porphyromonas gingivalis W83 hypothetical protein NP_905721.1 1668057 D 242619 CDS NP_905722.1 34541243 2552913 1669523..1671595 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; HDIG domain-containing protein 1671595 2552913 PG1592 Porphyromonas gingivalis W83 HDIG domain-containing protein NP_905722.1 1669523 D 242619 CDS NP_905723.1 34541244 2552909 1671643..1672203 1 NC_002950.2 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1672203 aroK 2552909 aroK Porphyromonas gingivalis W83 shikimate kinase NP_905723.1 1671643 D 242619 CDS NP_905724.1 34541245 2552905 complement(1672142..1673677) 1 NC_002950.2 similar to GB:D00496, SP:P17167, and PID:216759; identified by sequence similarity; putative; ComEC/Rec2-like protein 1673677 2552905 PG1594 Porphyromonas gingivalis W83 ComEC/Rec2-like protein NP_905724.1 1672142 R 242619 CDS NP_905725.1 34541246 2552894 complement(1673684..1674340) 1 NC_002950.2 ribulose-phosphate 3-epimerase 1674340 rpe 2552894 rpe Porphyromonas gingivalis W83 ribulose-phosphate 3-epimerase NP_905725.1 1673684 R 242619 CDS NP_905726.1 34541247 2552895 1674683..1678096 1 NC_002950.2 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 1678096 ileS 2552895 ileS Porphyromonas gingivalis W83 isoleucyl-tRNA synthetase NP_905726.1 1674683 D 242619 CDS NP_905727.1 34541248 2552890 1678166..1678546 1 NC_002950.2 similar to GB:U14003, SP:P39402, PID:537207, GB:U00096, and PID:1790826; identified by sequence similarity; putative; DnaK suppressor protein 1678546 2552890 PG1597 Porphyromonas gingivalis W83 DnaK suppressor protein NP_905727.1 1678166 D 242619 CDS NP_905728.1 34541249 2552888 1678550..1679230 1 NC_002950.2 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1679230 2552888 PG1598 Porphyromonas gingivalis W83 lipoprotein signal peptidase NP_905728.1 1678550 D 242619 CDS NP_905729.1 34541250 2552885 1679227..1680015 1 NC_002950.2 hypothetical protein 1680015 2552885 PG1599 Porphyromonas gingivalis W83 hypothetical protein NP_905729.1 1679227 D 242619 CDS NP_905730.1 34541251 2552875 complement(1680049..1681074) 1 NC_002950.2 hypothetical protein 1681074 2552875 PG1600 Porphyromonas gingivalis W83 hypothetical protein NP_905730.1 1680049 R 242619 CDS NP_905731.1 34541252 2552874 complement(1681109..1681882) 1 NC_002950.2 similar to GB:M89470, GB:L25597, SP:Q02962, PID:438650, and PID:553607; identified by sequence similarity; putative; biotin--acetyl-CoA-carboxylase ligase 1681882 2552874 PG1601 Porphyromonas gingivalis W83 biotin--acetyl-CoA-carboxylase ligase NP_905731.1 1681109 R 242619 CDS NP_905732.1 34541253 2552867 complement(1681854..1682234) 1 NC_002950.2 similar to GB:M16937, GB:M30598, SP:P09629, SP:P31267, SP:P31268, and PID:306878; identified by sequence similarity; putative; hypothetical protein 1682234 2552867 PG1602 Porphyromonas gingivalis W83 hypothetical protein NP_905732.1 1681854 R 242619 CDS NP_905733.1 34541254 2552864 1682305..1682889 1 NC_002950.2 hydrolyzes non-standard nucleotides such as xanthine and inosine; putative deoxyribonucleoside-triphosphatase 1682889 2552864 PG1603 Porphyromonas gingivalis W83 putative deoxyribonucleoside-triphosphatase NP_905733.1 1682305 D 242619 CDS NP_905734.1 34541255 2552855 1682877..1685207 1 NC_002950.2 hypothetical protein 1685207 2552855 PG1604 Porphyromonas gingivalis W83 hypothetical protein NP_905734.1 1682877 D 242619 CDS NP_905735.1 34541256 2552854 1685319..1686662 1 NC_002950.2 similar to GB:X70308, GB:D13079, GB:M99570, GB:L11162, GB:S61985, PID:2358033, PID:36884, PID:36894, PID:36901, PID:404053, PID:407751, PID:437035, PID:639839, PID:758615, PID:804775, PID:804776, PID:804777, and PID:940541; identified by sequence similarity; putative; aminopeptidase 1686662 pepC 2552854 pepC Porphyromonas gingivalis W83 aminopeptidase NP_905735.1 1685319 D 242619 CDS NP_905736.1 34541257 2552852 complement(1686993..1687715) 1 NC_002950.2 ion transporter 1687715 2552852 PG1606 Porphyromonas gingivalis W83 ion transporter NP_905736.1 1686993 R 242619 CDS NP_905737.1 34541258 2552847 complement(1688775..1689926) 1 NC_002950.2 similar to GB:S85655, GB:U17179, and SP:P35232; identified by sequence similarity; putative; methylmalonyl-CoA decarboxylase subunit beta 1689926 mmdB 2552847 mmdB Porphyromonas gingivalis W83 methylmalonyl-CoA decarboxylase subunit beta NP_905737.1 1688775 R 242619 CDS NP_905738.1 34541259 2552848 complement(1689931..1690365) 1 NC_002950.2 methylmalonyl-CoA decarboxylase subunit gamma 1690365 mmdC 2552848 mmdC Porphyromonas gingivalis W83 methylmalonyl-CoA decarboxylase subunit gamma NP_905738.1 1689931 R 242619 CDS NP_905739.1 34541260 2552845 complement(1690403..1690639) 1 NC_002950.2 hypothetical protein 1690639 2552845 PG1610 Porphyromonas gingivalis W83 hypothetical protein NP_905739.1 1690403 R 242619 CDS NP_905740.1 34541261 2552842 complement(1690636..1691577) 1 NC_002950.2 hypothetical protein 1691577 2552842 PG1611 Porphyromonas gingivalis W83 hypothetical protein NP_905740.1 1690636 R 242619 CDS NP_905741.1 34541262 2552838 complement(1691602..1693155) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01698; methylmalonyl-CoA decarboxylase subunit alpha 1693155 mmdA 2552838 mmdA Porphyromonas gingivalis W83 methylmalonyl-CoA decarboxylase subunit alpha NP_905741.1 1691602 R 242619 CDS NP_905742.1 34541263 2552835 complement(1693254..1693658) 1 NC_002950.2 similar to GB:M35130, SP:P14638, GB:M31474, and PID:150072; identified by sequence similarity; putative; glyoxalase 1693658 2552835 PG1613 Porphyromonas gingivalis W83 glyoxalase NP_905742.1 1693254 R 242619 CDS NP_905743.1 34541264 2552830 complement(1693890..1694645) 1 NC_002950.2 catalyzes the reversible formation of fumarate and ubiquinol from succinate and ubiquinone; succinate dehydrogenase/fumarate reductase iron-sulfur subunit 1694645 frdB 2552830 frdB Porphyromonas gingivalis W83 succinate dehydrogenase/fumarate reductase iron-sulfur subunit NP_905743.1 1693890 R 242619 CDS NP_905744.1 34541265 2552827 complement(1694674..1696617) 1 NC_002950.2 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1696617 sdhA 2552827 sdhA Porphyromonas gingivalis W83 succinate dehydrogenase flavoprotein subunit NP_905744.1 1694674 R 242619 CDS NP_905745.1 34541266 2552820 complement(1696648..1697340) 1 NC_002950.2 hypothetical protein 1697340 2552820 PG1616 Porphyromonas gingivalis W83 hypothetical protein NP_905745.1 1696648 R 242619 CDS NP_905746.1 34541267 2552816 complement(1697387..1697845) 1 NC_002950.2 hypothetical protein 1697845 2552816 PG1617 Porphyromonas gingivalis W83 hypothetical protein NP_905746.1 1697387 R 242619 CDS NP_905747.1 34541268 2552808 1698043..1698729 1 NC_002950.2 similar to GB:L10975, GB:L10975, PID:425446, GB:L10975, GB:L10975, and PID:425446; identified by sequence similarity; putative; hypothetical protein 1698729 2552808 PG1618 Porphyromonas gingivalis W83 hypothetical protein NP_905747.1 1698043 D 242619 CDS NP_905748.1 34541269 2552806 1698708..1699475 1 NC_002950.2 similar to GB:M57707, GB:M38258, SP:P13631, SP:P22932, PID:190868, PID:190872, and PID:306887; identified by sequence similarity; putative; biotin synthesis protein BioC 1699475 2552806 PG1619 Porphyromonas gingivalis W83 biotin synthesis protein BioC NP_905748.1 1698708 D 242619 CDS NP_905749.1 34541270 2552802 complement(1699505..1700581) 1 NC_002950.2 similar to GB:M64171, GB:X60678, PID:144537, PID:311996, PID:927405, and PID:1518659; identified by sequence similarity; putative; carboxyl-terminal protease-like protein 1700581 2552802 PG1620 Porphyromonas gingivalis W83 carboxyl-terminal protease-like protein NP_905749.1 1699505 R 242619 CDS NP_905750.1 34541271 2552796 complement(1700574..1701521) 1 NC_002950.2 hypothetical protein 1701521 2552796 PG1621 Porphyromonas gingivalis W83 hypothetical protein NP_905750.1 1700574 R 242619 CDS NP_905751.1 34541272 2552794 complement(1701508..1704204) 1 NC_002950.2 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1704204 2552794 PG1622 Porphyromonas gingivalis W83 DNA topoisomerase IV subunit A NP_905751.1 1701508 R 242619 CDS NP_905752.1 34541273 2552790 complement(1704265..1705455) 1 NC_002950.2 membrane bound regulatory protein 1705455 2552790 PG1623 Porphyromonas gingivalis W83 membrane bound regulatory protein NP_905752.1 1704265 R 242619 CDS NP_905753.1 34541274 2552785 complement(1706278..1707363) 1 NC_002950.2 ISPg1, transposase 1707363 2552785 PG1624 Porphyromonas gingivalis W83 ISPg1, transposase NP_905753.1 1706278 R 242619 CDS NP_905754.1 34541275 2552783 1707576..1708778 1 NC_002950.2 hypothetical protein 1708778 2552783 PG1625 Porphyromonas gingivalis W83 hypothetical protein NP_905754.1 1707576 D 242619 CDS NP_905755.1 34541276 2552786 1708882..1710546 1 NC_002950.2 hypothetical protein 1710546 2552786 PG1626 Porphyromonas gingivalis W83 hypothetical protein NP_905755.1 1708882 D 242619 CDS NP_905756.1 34541277 2552773 1711912..1712202 1 NC_002950.2 hypothetical protein 1712202 2552773 PG1630 Porphyromonas gingivalis W83 hypothetical protein NP_905756.1 1711912 D 242619 CDS NP_905757.1 34541278 2552772 1712408..1713475 1 NC_002950.2 similar to GB:X78412, SP:P45454, PID:498768, GB:X56997, GB:Y00361, SP:P02248, SP:P14793, PID:37565, PID:37567, PID:37569, and PID:825728; identified by sequence similarity; putative; aldose 1-epimerase 1713475 galM 2552772 galM Porphyromonas gingivalis W83 aldose 1-epimerase NP_905757.1 1712408 D 242619 CDS NP_905758.1 34541279 2552770 1713525..1714679 1 NC_002950.2 galactokinase 1714679 galK 2552770 galK Porphyromonas gingivalis W83 galactokinase NP_905758.1 1713525 D 242619 CDS NP_905759.1 34541280 2552767 complement(1714813..1715238) 1 NC_002950.2 hypothetical protein 1715238 2552767 PG1634 Porphyromonas gingivalis W83 hypothetical protein NP_905759.1 1714813 R 242619 CDS NP_905760.1 34541281 2552028 complement(1715304..1715951) 1 NC_002950.2 hypothetical protein 1715951 2552028 PG1635 Porphyromonas gingivalis W83 hypothetical protein NP_905760.1 1715304 R 242619 CDS NP_905761.1 34541282 2552755 complement(1715965..1718550) 1 NC_002950.2 FtsK/SpoIIIE family protein 1718550 2552755 PG1636 Porphyromonas gingivalis W83 FtsK/SpoIIIE family protein NP_905761.1 1715965 R 242619 CDS NP_905762.1 34541283 2552757 complement(1718754..1719740) 1 NC_002950.2 thioredoxin family protein 1719740 2552757 PG1638 Porphyromonas gingivalis W83 thioredoxin family protein NP_905762.1 1718754 R 242619 CDS NP_905763.1 34541284 2552751 complement(1719866..1720009) 1 NC_002950.2 hypothetical protein 1720009 2552751 PG1639 Porphyromonas gingivalis W83 hypothetical protein NP_905763.1 1719866 R 242619 CDS NP_905764.1 34541285 2552749 complement(1720025..1721335) 1 NC_002950.2 DNA-damage-inducible protein F 1721335 dinF 2552749 dinF Porphyromonas gingivalis W83 DNA-damage-inducible protein F NP_905764.1 1720025 R 242619 CDS NP_905765.1 34541286 2552747 complement(1721350..1721853) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01451; phosphotyrosine protein phosphatase 1721853 2552747 PG1641 Porphyromonas gingivalis W83 phosphotyrosine protein phosphatase NP_905765.1 1721350 R 242619 CDS NP_905766.1 34541287 2551509 complement(1724771..1725709) 1 NC_002950.2 ISPg5, transposase Orf2 1725709 2551509 PG1644 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_905766.1 1724771 R 242619 CDS NP_905767.1 34541288 2551518 complement(1725763..1726152) 1 NC_002950.2 ISPg5, transposase Orf1 1726152 2551518 PG1645 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_905767.1 1725763 R 242619 CDS NP_905768.1 34541289 2551517 1726413..1727834 1 NC_002950.2 cardiolipin synthetase 1727834 cls 2551517 cls Porphyromonas gingivalis W83 cardiolipin synthetase NP_905768.1 1726413 D 242619 CDS NP_905769.1 34541290 2552656 1727902..1730142 1 NC_002950.2 RelA/SpoT family protein 1730142 2552656 PG1648 Porphyromonas gingivalis W83 RelA/SpoT family protein NP_905769.1 1727902 D 242619 CDS NP_905770.1 34541291 2552660 complement(1730120..1730242) 1 NC_002950.2 hypothetical protein 1730242 2552660 PG1649 Porphyromonas gingivalis W83 hypothetical protein NP_905770.1 1730120 R 242619 CDS NP_905771.1 34541292 2552718 1730466..1733453 1 NC_002950.2 hypothetical protein 1733453 2552718 PG1651 Porphyromonas gingivalis W83 hypothetical protein NP_905771.1 1730466 D 242619 CDS NP_905772.1 34541293 2552717 1733480..1735270 1 NC_002950.2 hypothetical protein 1735270 2552717 PG1652 Porphyromonas gingivalis W83 hypothetical protein NP_905772.1 1733480 D 242619 CDS NP_905773.1 34541294 2552713 1735295..1736518 1 NC_002950.2 similar to GB:M37435, GB:M27087, GB:M11038, GB:M11295, GB:M11296, GB:M64592, SP:P09603, PID:181135, PID:181144, PID:187463, PID:508986, PID:757917, PID:758781, GB:M37435, GB:M27087, GB:M11038, GB:M11295, GB:M11296, GB:M64592, SP:P09603, PID:181135, PID:181144, PID:187463, PID:508986, PID:757917, and PID:758781; identified by sequence similarity; putative; hypothetical protein 1736518 2552713 PG1653 Porphyromonas gingivalis W83 hypothetical protein NP_905773.1 1735295 D 242619 CDS NP_905774.1 34541295 2552723 1736598..1737221 1 NC_002950.2 D-alanyl-D-alanine dipeptidase 1737221 2552723 PG1654 Porphyromonas gingivalis W83 D-alanyl-D-alanine dipeptidase NP_905774.1 1736598 D 242619 CDS NP_905775.1 34541296 2552702 1737235..1737444 1 NC_002950.2 hypothetical protein 1737444 2552702 PG1655 Porphyromonas gingivalis W83 hypothetical protein NP_905775.1 1737235 D 242619 CDS NP_905776.1 34541297 2552711 1737599..1739455 1 NC_002950.2 similar to GB:M13932, GB:M18000, SP:P08708, PID:337501, and PID:337503; identified by sequence similarity; putative; methylmalonyl-CoA mutase small subunit 1739455 mutA 2552711 mutA Porphyromonas gingivalis W83 methylmalonyl-CoA mutase small subunit NP_905776.1 1737599 D 242619 CDS NP_905777.1 34541298 2552667 1739484..1741631 1 NC_002950.2 MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1741631 mutB 2552667 mutB Porphyromonas gingivalis W83 methylmalonyl-CoA mutase NP_905777.1 1739484 D 242619 CDS NP_905778.1 34541299 2552677 complement(1741837..1742994) 1 NC_002950.2 ISPg4, transposase 1742994 2552677 PG1658 Porphyromonas gingivalis W83 ISPg4, transposase NP_905778.1 1741837 R 242619 CDS NP_905779.1 34541300 2552669 complement(1743445..1743837) 1 NC_002950.2 hypothetical protein 1743837 2552669 PG1659 Porphyromonas gingivalis W83 hypothetical protein NP_905779.1 1743445 R 242619 CDS NP_905780.1 34541301 2552666 complement(1743834..1744358) 1 NC_002950.2 ECF subfamily RNA polymerase sigma factor 1744358 2552666 PG1660 Porphyromonas gingivalis W83 ECF subfamily RNA polymerase sigma factor NP_905780.1 1743834 R 242619 CDS NP_905781.1 34541302 2552685 1744608..1744895 1 NC_002950.2 hypothetical protein 1744895 2552685 PG1661 Porphyromonas gingivalis W83 hypothetical protein NP_905781.1 1744608 D 242619 CDS NP_905782.1 34541303 2552699 1744876..1745250 1 NC_002950.2 hypothetical protein 1745250 2552699 PG1662 Porphyromonas gingivalis W83 hypothetical protein NP_905782.1 1744876 D 242619 CDS NP_905783.1 34541304 2552698 1745269..1745928 1 NC_002950.2 ABC transporter ATP-binding protein 1745928 2552698 PG1663 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905783.1 1745269 D 242619 CDS NP_905784.1 34541305 2552695 1745953..1747227 1 NC_002950.2 similar to SP:P28910, PID:147625, PID:466617, GB:U00096, and PID:1789892; identified by sequence similarity; putative; ABC transporter permease 1747227 2552695 PG1664 Porphyromonas gingivalis W83 ABC transporter permease NP_905784.1 1745953 D 242619 CDS NP_905785.1 34541306 2552688 1747250..1748512 1 NC_002950.2 similar to GB:U18321, SP:P51398, and PID:603764; identified by sequence similarity; putative; ABC transporter permease 1748512 2552688 PG1665 Porphyromonas gingivalis W83 ABC transporter permease NP_905785.1 1747250 D 242619 CDS NP_905786.1 34541307 2552737 1748582..1749688 1 NC_002950.2 RND family efflux transporter MFP subunit 1749688 2552737 PG1666 Porphyromonas gingivalis W83 RND family efflux transporter MFP subunit NP_905786.1 1748582 D 242619 CDS NP_905787.1 34541308 2552661 1749685..1751052 1 NC_002950.2 previously submitted to Genbank by Ross, et al as immunoreactive 51kD antigen PG52; outer membrane efflux protein 1751052 2552661 PG1667 Porphyromonas gingivalis W83 outer membrane efflux protein NP_905787.1 1749685 D 242619 CDS NP_905788.1 34541309 2552643 complement(1755501..1755656) 1 NC_002950.2 hypothetical protein 1755656 2552643 PG1669 Porphyromonas gingivalis W83 hypothetical protein NP_905788.1 1755501 R 242619 CDS NP_905789.1 34541310 2552645 complement(1755785..1755943) 1 NC_002950.2 hypothetical protein 1755943 2552645 PG1670 Porphyromonas gingivalis W83 hypothetical protein NP_905789.1 1755785 R 242619 CDS NP_905790.1 34541311 2552622 complement(1757530..1757748) 1 NC_002950.2 hypothetical protein 1757748 2552622 PG1671 Porphyromonas gingivalis W83 hypothetical protein NP_905790.1 1757530 R 242619 CDS NP_905791.1 34541312 2552624 1757777..1757944 1 NC_002950.2 hypothetical protein 1757944 2552624 PG1672 Porphyromonas gingivalis W83 hypothetical protein NP_905791.1 1757777 D 242619 CDS NP_905792.1 34541313 2552618 1758528..1759685 1 NC_002950.2 ISPg4, transposase 1759685 2552618 PG1673 Porphyromonas gingivalis W83 ISPg4, transposase NP_905792.1 1758528 D 242619 CDS NP_905793.1 34541314 2552609 1760322..1760420 1 NC_002950.2 hypothetical protein 1760420 2552609 PG1675 Porphyromonas gingivalis W83 hypothetical protein NP_905793.1 1760322 D 242619 CDS NP_905794.1 34541315 2552610 complement(1760579..1762186) 1 NC_002950.2 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1762186 pckA 2552610 pckA Porphyromonas gingivalis W83 phosphoenolpyruvate carboxykinase NP_905794.1 1760579 R 242619 CDS NP_905795.1 34541316 2552606 1762482..1763738 1 NC_002950.2 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1763738 pgk 2552606 pgk Porphyromonas gingivalis W83 phosphoglycerate kinase NP_905795.1 1762482 D 242619 CDS NP_905796.1 34541317 2552604 complement(1763845..1763952) 1 NC_002950.2 hypothetical protein 1763952 2552604 PG1678 Porphyromonas gingivalis W83 hypothetical protein NP_905796.1 1763845 R 242619 CDS NP_905797.1 34541318 2552599 1763936..1765330 1 NC_002950.2 hypothetical protein 1765330 2552599 PG1679 Porphyromonas gingivalis W83 hypothetical protein NP_905797.1 1763936 D 242619 CDS NP_905798.1 34541319 2552597 1766552..1768528 1 NC_002950.2 glycogen debranching protein 1768528 2552597 PG1681 Porphyromonas gingivalis W83 glycogen debranching protein NP_905798.1 1766552 D 242619 CDS NP_905799.1 34541320 2552587 1768525..1769787 1 NC_002950.2 glycosyl transferase 1769787 2552587 PG1682 Porphyromonas gingivalis W83 glycosyl transferase NP_905799.1 1768525 D 242619 CDS NP_905800.1 34541321 2552592 1769784..1771070 1 NC_002950.2 similar to GB:Z27512, GB:Z14073, SP:P01764, PID:483870, PID:495944, PID:495993, PID:495995, PID:496014, PID:511000, PID:553412, PID:553422, PID:553456, PID:553461, PID:553468, PID:587277, PID:587307, PID:587314, PID:587318, PID:619625, PID:642584, PID:790809, PID:896272, PID:896273, PID:903667, PID:903675, PID:905377, PID:976299, and PID:976311; identified by sequence similarity; putative; hypothetical protein 1771070 2552592 PG1683 Porphyromonas gingivalis W83 hypothetical protein NP_905800.1 1769784 D 242619 CDS NP_905801.1 34541322 2552593 1771067..1771543 1 NC_002950.2 hypothetical protein 1771543 2552593 PG1684 Porphyromonas gingivalis W83 hypothetical protein NP_905801.1 1771067 D 242619 CDS NP_905802.1 34541323 2552584 complement(1772306..1773088) 1 NC_002950.2 hypothetical protein 1773088 2552584 PG1685 Porphyromonas gingivalis W83 hypothetical protein NP_905802.1 1772306 R 242619 CDS NP_905803.1 34541324 2552536 complement(1773902..1774291) 1 NC_002950.2 identified by match to PFAM protein family HMM PF01230; HIT family protein 1774291 2552536 PG1687 Porphyromonas gingivalis W83 HIT family protein NP_905803.1 1773902 R 242619 CDS NP_905804.1 34541325 2552568 complement(1774306..1774776) 1 NC_002950.2 transcription elongation factor GreA 1774776 greA 2552568 greA Porphyromonas gingivalis W83 transcription elongation factor GreA NP_905804.1 1774306 R 242619 CDS NP_905805.1 34541326 2552564 complement(1775261..1775863) 1 NC_002950.2 similar to GB:X75342, and PID:406738; identified by sequence similarity; putative; Sua5/YciO/YrdC/YwlC family protein 1775863 2552564 PG1690 Porphyromonas gingivalis W83 Sua5/YciO/YrdC/YwlC family protein NP_905805.1 1775261 R 242619 CDS NP_905806.1 34541327 2552585 complement(1775870..1776574) 1 NC_002950.2 hypothetical protein 1776574 2552585 PG1691 Porphyromonas gingivalis W83 hypothetical protein NP_905806.1 1775870 R 242619 CDS NP_905807.1 34541328 2552565 complement(1776604..1777263) 1 NC_002950.2 ABC transporter ATP-binding protein 1777263 2552565 PG1692 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905807.1 1776604 R 242619 CDS NP_905808.1 34541329 2552572 complement(1777260..1778009) 1 NC_002950.2 HesA/MoeB/ThiF family protein 1778009 2552572 PG1693 Porphyromonas gingivalis W83 HesA/MoeB/ThiF family protein NP_905808.1 1777260 R 242619 CDS NP_905809.1 34541330 2552538 complement(1778006..1779100) 1 NC_002950.2 hypothetical protein 1779100 2552538 PG1694 Porphyromonas gingivalis W83 hypothetical protein NP_905809.1 1778006 R 242619 CDS NP_905810.1 34541331 2552556 1779580..1779771 1 NC_002950.2 hypothetical protein 1779771 2552556 PG1695 Porphyromonas gingivalis W83 hypothetical protein NP_905810.1 1779580 D 242619 CDS NP_905811.1 34541332 2552555 1780113..1781150 1 NC_002950.2 Possibly an isoschizomer of LlaBIIM.; type II DNA modification methyltransferase 1781150 2552555 PG1696 Porphyromonas gingivalis W83 type II DNA modification methyltransferase NP_905811.1 1780113 D 242619 CDS NP_905812.1 34541333 2552553 1781160..1785134 1 NC_002950.2 Possibly an isoschizomer of LlaBIIR.; type II restriction endonuclease 1785134 2552553 PG1697 Porphyromonas gingivalis W83 type II restriction endonuclease NP_905812.1 1781160 D 242619 CDS NP_905813.1 34541334 2552552 complement(1786235..1788043) 1 NC_002950.2 glutamine amidotransferase 1788043 2552552 PG1701 Porphyromonas gingivalis W83 glutamine amidotransferase NP_905813.1 1786235 R 242619 CDS NP_905814.1 34541335 2552582 complement(1788036..1790000) 1 NC_002950.2 DNA gyrase subunit B 1790000 gyrB 2552582 gyrB Porphyromonas gingivalis W83 DNA gyrase subunit B NP_905814.1 1788036 R 242619 CDS NP_905815.1 34541336 2552579 complement(1790058..1790843) 1 NC_002950.2 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1790843 mazG 2552579 mazG Porphyromonas gingivalis W83 nucleoside triphosphate pyrophosphohydrolase NP_905815.1 1790058 R 242619 CDS NP_905816.1 34541337 2552576 complement(1790861..1792909) 1 NC_002950.2 thiol:disulfide interchange protein dsbD 1792909 2552576 PG1704 Porphyromonas gingivalis W83 thiol:disulfide interchange protein dsbD NP_905816.1 1790861 R 242619 CDS NP_905817.1 34541338 2552566 complement(1793939..1794301) 1 NC_002950.2 hypothetical protein 1794301 2552566 PG1706 Porphyromonas gingivalis W83 hypothetical protein NP_905817.1 1793939 R 242619 CDS NP_905818.1 34541339 2552516 complement(1794322..1794687) 1 NC_002950.2 identified by match to PFAM protein family HMM PF04977; hypothetical protein 1794687 2552516 PG1707 Porphyromonas gingivalis W83 hypothetical protein NP_905818.1 1794322 R 242619 CDS NP_905819.1 34541340 2552490 1795054..1795443 1 NC_002950.2 ISPg5, transposase Orf1 1795443 2552490 PG1709 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_905819.1 1795054 D 242619 CDS NP_905820.1 34541341 2552489 1795497..1796435 1 NC_002950.2 identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 1796435 2552489 PG1710 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_905820.1 1795497 D 242619 CDS NP_905821.1 34541342 2552535 complement(1796742..1799003) 1 NC_002950.2 alpha-1,2-mannosidase 1799003 2552535 PG1711 Porphyromonas gingivalis W83 alpha-1,2-mannosidase NP_905821.1 1796742 R 242619 CDS NP_905822.1 34541343 2552534 complement(1799070..1801415) 1 NC_002950.2 alpha-1,2-mannosidase 1801415 2552534 PG1712 Porphyromonas gingivalis W83 alpha-1,2-mannosidase NP_905822.1 1799070 R 242619 CDS NP_905823.1 34541344 2552512 complement(1801497..1801901) 1 NC_002950.2 putative lipoprotein 1801901 2552512 PG1713 Porphyromonas gingivalis W83 putative lipoprotein NP_905823.1 1801497 R 242619 CDS NP_905824.1 34541345 2552531 complement(1801938..1802582) 1 NC_002950.2 pyridoxamine-phosphate oxidase 1802582 pdxH 2552531 pdxH Porphyromonas gingivalis W83 pyridoxamine-phosphate oxidase NP_905824.1 1801938 R 242619 CDS NP_905825.1 34541346 2552503 complement(1803483..1806146) 1 NC_002950.2 hypothetical protein 1806146 2552503 PG1715 Porphyromonas gingivalis W83 hypothetical protein NP_905825.1 1803483 R 242619 CDS NP_905826.1 34541347 2552525 complement(1806622..1806897) 1 NC_002950.2 hypothetical protein 1806897 2552525 PG1718 Porphyromonas gingivalis W83 hypothetical protein NP_905826.1 1806622 R 242619 CDS NP_905827.1 34541348 2552497 1806889..1808739 1 NC_002950.2 similar to GB:M96669, SP:Q04937, PID:149490, GB:X61177, SP:Q01344, PID:1247445, PID:1247447, PID:186343, PID:186345, PID:186388, PID:33840, PID:33844, PID:36466, and PID:825601; identified by sequence similarity; putative; ABC transporter ATP-binding protein 1808739 2552497 PG1719 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905827.1 1806889 D 242619 CDS NP_905828.1 34541349 2552509 1808755..1810284 1 NC_002950.2 similar to GB:X80506, SP:P45783, PID:516863, GB:X80506, SP:P45783, and PID:516863; identified by sequence similarity; putative; hypothetical protein 1810284 2552509 PG1720 Porphyromonas gingivalis W83 hypothetical protein NP_905828.1 1808755 D 242619 CDS NP_905829.1 34541350 2552507 1810424..1812532 1 NC_002950.2 similar to SP:P31631, GB:M62363, and PID:150518; identified by sequence similarity; putative; ribonuclease R 1812532 vacB 2552507 vacB Porphyromonas gingivalis W83 ribonuclease R NP_905829.1 1810424 D 242619 CDS NP_905830.1 34541351 2552492 complement(1812723..1813028) 1 NC_002950.2 hypothetical protein 1813028 2552492 PG1722 Porphyromonas gingivalis W83 hypothetical protein NP_905830.1 1812723 R 242619 CDS NP_905831.1 34541352 2552468 1813209..1813463 1 NC_002950.2 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1813463 rpsT 2552468 rpsT Porphyromonas gingivalis W83 30S ribosomal protein S20 NP_905831.1 1813209 D 242619 CDS NP_905832.1 34541353 2552462 1813881..1814906 1 NC_002950.2 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1814906 gcp 2552462 gcp Porphyromonas gingivalis W83 putative DNA-binding/iron metalloprotein/AP endonuclease NP_905832.1 1813881 D 242619 CDS NP_905833.1 34541354 2552484 1814906..1815388 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00199; competence/damage inducible protein CinA 1815388 2552484 PG1725 Porphyromonas gingivalis W83 competence/damage inducible protein CinA NP_905833.1 1814906 D 242619 CDS NP_905834.1 34541355 2552449 1815421..1816839 1 NC_002950.2 PDZ domain-containing protein 1816839 2552449 PG1726 Porphyromonas gingivalis W83 PDZ domain-containing protein NP_905834.1 1815421 D 242619 CDS NP_905835.1 34541356 2552426 1816849..1817712 1 NC_002950.2 similar to SP:P08063, PID:154718, and PID:154801; identified by sequence similarity; putative; hypothetical protein 1817712 yitL 2552426 yitL Porphyromonas gingivalis W83 hypothetical protein NP_905835.1 1816849 D 242619 CDS NP_905836.1 34541357 2552453 1817784..1818236 1 NC_002950.2 identified by match to PFAM protein family HMM PF00383; cytidine/deoxycytidylate deaminase 1818236 2552453 PG1728 Porphyromonas gingivalis W83 cytidine/deoxycytidylate deaminase NP_905836.1 1817784 D 242619 CDS NP_905837.1 34541358 2552409 complement(1818432..1818971) 1 NC_002950.2 similar to SP:P14250, and PID:148571; identified by sequence similarity; putative; thiol peroxidase 1818971 2552409 PG1729 Porphyromonas gingivalis W83 thiol peroxidase NP_905837.1 1818432 R 242619 CDS NP_905838.1 34541359 2552430 complement(1819017..1819667) 1 NC_002950.2 similar to GB:L07024, and PID:142778; identified by sequence similarity; putative; O-methyltransferase 1819667 2552430 PG1730 Porphyromonas gingivalis W83 O-methyltransferase NP_905838.1 1819017 R 242619 CDS NP_905839.1 34541360 2552429 complement(1819768..1820193) 1 NC_002950.2 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1820193 aroQ 2552429 aroQ Porphyromonas gingivalis W83 3-dehydroquinate dehydratase NP_905839.1 1819768 R 242619 CDS NP_905840.1 34541361 2552438 1820311..1821237 1 NC_002950.2 similar to GB:D00173, GB:S46963, SP:P11712, SP:P11713, SP:P33259, SP:P33261, PID:181362, PID:181364, PID:181366, and PID:219571; identified by sequence similarity; putative; integrase/recombinase XerD 1821237 xerD 2552438 xerD Porphyromonas gingivalis W83 integrase/recombinase XerD NP_905840.1 1820311 D 242619 CDS NP_905841.1 34541362 2552443 complement(1821276..1821713) 1 NC_002950.2 hypothetical protein 1821713 2552443 PG1733 Porphyromonas gingivalis W83 hypothetical protein NP_905841.1 1821276 R 242619 CDS NP_905842.1 34541363 2552411 complement(1821710..1822651) 1 NC_002950.2 transporter 1822651 2552411 PG1734 Porphyromonas gingivalis W83 transporter NP_905842.1 1821710 R 242619 CDS NP_905843.1 34541364 2552450 complement(1822618..1823172) 1 NC_002950.2 MutT/nudix family protein 1823172 2552450 PG1735 Porphyromonas gingivalis W83 MutT/nudix family protein NP_905843.1 1822618 R 242619 CDS NP_905844.1 34541365 2552455 complement(1824187..1825221) 1 NC_002950.2 hypothetical protein 1825221 2552455 PG1738 Porphyromonas gingivalis W83 hypothetical protein NP_905844.1 1824187 R 242619 CDS NP_905845.1 34541366 2552436 complement(1825218..1825799) 1 NC_002950.2 hypothetical protein 1825799 2552436 PG1739 Porphyromonas gingivalis W83 hypothetical protein NP_905845.1 1825218 R 242619 CDS NP_905846.1 34541367 2551370 complement(1825946..1827373) 1 NC_002950.2 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 1827373 aspA 2551370 aspA Porphyromonas gingivalis W83 aspartate ammonia-lyase NP_905846.1 1825946 R 242619 CDS NP_905847.1 34541368 2551482 1827390..1827566 1 NC_002950.2 hypothetical protein 1827566 2551482 PG1742 Porphyromonas gingivalis W83 hypothetical protein NP_905847.1 1827390 D 242619 CDS NP_905848.1 34541369 2551463 complement(1827620..1828438) 1 NC_002950.2 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1828438 kdsA 2551463 kdsA Porphyromonas gingivalis W83 2-dehydro-3-deoxyphosphooctonate aldolase NP_905848.1 1827620 R 242619 CDS NP_905849.1 34541370 2551417 complement(1829525..1831114) 1 NC_002950.2 similar to SP:P13467, SP:P16155, SP:P23732, SP:P17451, SP:P19542, SP:P06597, SP:P23114, SP:P23421, GB:X16007, SP:P08780, GB:J03813, GB:L35605, GB:L35606, GB:M14738, GB:M17342, GB:M33635, GB:M33636, GB:M35099, GB:M36533, GB:M58938, GB:X55700, GB:X62921, PID:1321799, PID:2076876, SP:P13467, SP:P16155, SP:P23732, SP:P17451, SP:P19542, SP:P06597, SP:P23114, SP:P23421, GB:X52080, SP:P08780, GB:J03813, GB:L35605, GB:L35606, GB:M14738, GB:M17342, GB:M33635, GB:M33636, GB:M35099, GB:M36533, GB:M58938, GB:X55700, GB:X62921, PID:1321799, PID:2076876, SP:P13467, SP:P16155, SP:P23732, SP:P17451, SP:P19542, SP:P06597, SP:P23114, SP:P23421, GB:X52557, SP:P08780, GB:J03813, GB:L35605, GB:L35606, GB:M14738, GB:M17342, GB:M33635, GB:M33636, GB:M35099, GB:M36533, GB:M58938, GB:X55700, GB:X62921, PID:1321799, and PID:2076876; identified by sequence similarity; putative; phosphoribulokinase 1831114 2551417 PG1745 Porphyromonas gingivalis W83 phosphoribulokinase NP_905849.1 1829525 R 242619 CDS NP_905850.1 34541371 2551454 complement(1831190..1832320) 1 NC_002950.2 similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase 1832320 2551454 PG1746 Porphyromonas gingivalis W83 ISPg2, transposase NP_905850.1 1831190 R 242619 CDS NP_905851.1 34541372 2551393 complement(1832468..1832905) 1 NC_002950.2 ribose 5-phosphate isomerase B 1832905 2551393 PG1747 Porphyromonas gingivalis W83 ribose 5-phosphate isomerase B NP_905851.1 1832468 R 242619 CDS NP_905852.1 34541373 2551396 complement(1832992..1835019) 1 NC_002950.2 transketolase 1835019 tkt 2551396 tkt Porphyromonas gingivalis W83 transketolase NP_905852.1 1832992 R 242619 CDS NP_905853.1 34541374 2551488 1835463..1837283 1 NC_002950.2 identified by match to PFAM protein family HMM PF00754; alpha-1,3/4-fucosidase 1837283 2551488 PG1750 Porphyromonas gingivalis W83 alpha-1,3/4-fucosidase NP_905853.1 1835463 D 242619 CDS NP_905854.1 34541375 2551397 1837420..1838550 1 NC_002950.2 class V aminotransferase 1838550 2551397 PG1751 Porphyromonas gingivalis W83 class V aminotransferase NP_905854.1 1837420 D 242619 CDS NP_905855.1 34541376 2551411 1838534..1838758 1 NC_002950.2 hypothetical protein 1838758 2551411 PG1752 Porphyromonas gingivalis W83 hypothetical protein NP_905855.1 1838534 D 242619 CDS NP_905856.1 34541377 2551434 1838755..1839801 1 NC_002950.2 selenide, water dikinase 1839801 selD 2551434 selD Porphyromonas gingivalis W83 selenide, water dikinase NP_905856.1 1838755 D 242619 CDS NP_905857.1 34541378 2551451 1839819..1842344 1 NC_002950.2 hypothetical protein 1842344 2551451 PG1754 Porphyromonas gingivalis W83 hypothetical protein NP_905857.1 1839819 D 242619 CDS NP_905858.1 34541379 2552379 complement(1842487..1843368) 1 NC_002950.2 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 1843368 fbaB 2552379 fbaB Porphyromonas gingivalis W83 fructose-1,6-bisphosphate aldolase NP_905858.1 1842487 R 242619 CDS NP_905859.1 34541380 2552376 complement(1844021..1845052) 1 NC_002950.2 hypothetical protein 1845052 2552376 PG1757 Porphyromonas gingivalis W83 hypothetical protein NP_905859.1 1844021 R 242619 CDS NP_905860.1 34541381 2552374 1845325..1845594 1 NC_002950.2 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1845594 rpsO 2552374 rpsO Porphyromonas gingivalis W83 30S ribosomal protein S15 NP_905860.1 1845325 D 242619 CDS NP_905861.1 34541382 2552373 1845710..1846657 1 NC_002950.2 similar to SP:P18501, and PID:39033; identified by sequence similarity; putative; adhesion protein 1846657 2552373 PG1759 Porphyromonas gingivalis W83 adhesion protein NP_905861.1 1845710 D 242619 CDS NP_905862.1 34541383 2552370 1846647..1847276 1 NC_002950.2 ABC transporter ATP-binding protein 1847276 2552370 PG1760 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_905862.1 1846647 D 242619 CDS NP_905863.1 34541384 2552368 1847224..1847799 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 1847799 2552368 PG1761 Porphyromonas gingivalis W83 acetyltransferase NP_905863.1 1847224 D 242619 CDS NP_905864.2 161579529 2552333 1848017..1850962 1 NC_002950.2 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 1850962 secDF 2552333 secDF Porphyromonas gingivalis W83 bifunctional preprotein translocase subunit SecD/SecF NP_905864.2 1848017 D 242619 CDS NP_905865.1 34541386 2552329 complement(1851089..1851802) 1 NC_002950.2 similar to GB:L06133, GB:L06476, SP:Q04656, PID:179253, PID:2052036, PID:2052038, PID:34705, PID:464228, PID:854136, and PID:987255; identified by sequence similarity; putative; ribonuclease III 1851802 rnc 2552329 rnc Porphyromonas gingivalis W83 ribonuclease III NP_905865.1 1851089 R 242619 CDS NP_905866.1 34541387 2552383 complement(1851886..1853142) 1 NC_002950.2 3-oxoacyl-ACP synthase 1853142 fabF 2552383 fabF Porphyromonas gingivalis W83 3-oxoacyl-ACP synthase NP_905866.1 1851886 R 242619 CDS NP_905867.1 34541388 2552337 complement(1853152..1853388) 1 NC_002950.2 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1853388 acpP 2552337 acpP Porphyromonas gingivalis W83 acyl carrier protein NP_905867.1 1853152 R 242619 CDS NP_905868.1 34541389 2552346 1853557..1854138 1 NC_002950.2 similar to GB:Y00711, GB:X13794, GB:X13795, GB:X13796, GB:X13797, GB:X13798, GB:X13799, GB:X13800, SP:P07195, PID:1200083, PID:34329, GB:Y00711, GB:X13794, GB:X13795, GB:X13796, GB:X13797, GB:X13798, GB:X13799, GB:X13800, SP:P07195, PID:1200083, and PID:34329; identified by sequence similarity; putative; phosphoribosylglycinamide formyltransferase 1854138 purN 2552346 purN Porphyromonas gingivalis W83 phosphoribosylglycinamide formyltransferase NP_905868.1 1853557 D 242619 CDS NP_905869.1 34541390 2552344 1854135..1855175 1 NC_002950.2 putative lipoprotein 1855175 2552344 PG1767 Porphyromonas gingivalis W83 putative lipoprotein NP_905869.1 1854135 D 242619 CDS NP_905870.1 34541391 2552365 1855201..1856742 1 NC_002950.2 similar to GB:X06614, GB:S57794, SP:P10276, PID:1335286, PID:35874, PID:36157, PID:825712, GB:X55330, GB:M64073, GB:X55762, GB:M64075, GB:M64076, GB:U21281, GB:X61959, GB:U21273, GB:U21274, GB:U21275, GB:U21276, GB:U21277, GB:U21278, GB:U21279, GB:U21280, SP:P20933, PID:183334, PID:28534, PID:34760, PID:553306, and PID:732508; identified by sequence similarity; putative; magnesium chelatase subunit D/I family protein 1856742 2552365 PG1768 Porphyromonas gingivalis W83 magnesium chelatase subunit D/I family protein NP_905870.1 1855201 D 242619 CDS NP_905871.1 34541392 2552363 1856747..1857070 1 NC_002950.2 hypothetical protein 1857070 2552363 PG1769 Porphyromonas gingivalis W83 hypothetical protein NP_905871.1 1856747 D 242619 CDS NP_905872.1 34541393 2552361 1857424..1858101 1 NC_002950.2 hypothetical protein 1858101 2552361 PG1770 Porphyromonas gingivalis W83 hypothetical protein NP_905872.1 1857424 D 242619 CDS NP_905873.1 34541394 2552366 1858178..1859200 1 NC_002950.2 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1859200 pheS 2552366 pheS Porphyromonas gingivalis W83 phenylalanyl-tRNA synthetase subunit alpha NP_905873.1 1858178 D 242619 CDS NP_905874.1 34541395 2552358 1859219..1859893 1 NC_002950.2 similar to SP:P23794, GB:X53263, PID:296865, PID:296866, GB:M17398, GB:M21941, GB:M21942, GB:Y00498, GB:M17397, GB:X51535, SP:P10632, PID:181326, PID:181368, PID:181370, PID:23885, PID:297404, and PID:30335; identified by sequence similarity; putative; endonuclease III 1859893 nth 2552358 nth Porphyromonas gingivalis W83 endonuclease III NP_905874.1 1859219 D 242619 CDS NP_905875.1 34541396 2552402 1859955..1861292 1 NC_002950.2 PAP2 superfamily protein 1861292 2552402 PG1773 Porphyromonas gingivalis W83 PAP2 superfamily protein NP_905875.1 1859955 D 242619 CDS NP_905876.1 34541397 2552401 complement(1861269..1864637) 1 NC_002950.2 similar to GB:M81651, GB:M81652, SP:Q02383, PID:1147570, PID:307418, and PID:338239; identified by sequence similarity; putative; transcription-repair coupling factor 1864637 mfd 2552401 mfd Porphyromonas gingivalis W83 transcription-repair coupling factor NP_905876.1 1861269 R 242619 CDS NP_905877.1 34541398 2552398 1864984..1865568 1 NC_002950.2 heat shock protein GrpE 1865568 grpE 2552398 grpE Porphyromonas gingivalis W83 heat shock protein GrpE NP_905877.1 1864984 D 242619 CDS NP_905878.1 34541399 2552394 1865611..1866762 1 NC_002950.2 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 1866762 dnaJ 2552394 dnaJ Porphyromonas gingivalis W83 molecular chaperone DnaJ NP_905878.1 1865611 D 242619 CDS NP_905879.1 34541400 2552351 1866848..1867165 1 NC_002950.2 similar to GB:L29189, SP:P39215, PID:459688, PID:1934800, and GB:AL009126; identified by sequence similarity; putative; hypothetical protein 1867165 2552351 PG1777 Porphyromonas gingivalis W83 hypothetical protein NP_905879.1 1866848 D 242619 CDS NP_905880.1 34541401 2552349 1867194..1867982 1 NC_002950.2 similar to GB:J05412, GB:M18963, GB:L08010, GB:J05413, SP:P05451, SP:P48304, PID:190979, PID:190981, PID:474306, PID:474308, PID:487726, and PID:623413; identified by sequence similarity; putative; hypothetical protein 1867982 2552349 PG1778 Porphyromonas gingivalis W83 hypothetical protein NP_905880.1 1867194 D 242619 CDS NP_905881.1 34541402 2552391 1868064..1868558 1 NC_002950.2 similar to GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, and PID:758071; identified by sequence similarity; putative; hypothetical protein 1868558 2552391 PG1779 Porphyromonas gingivalis W83 hypothetical protein NP_905881.1 1868064 D 242619 CDS NP_905882.1 34541403 2552390 1868926..1870113 1 NC_002950.2 similar to GB:M10058, SP:P07306, and PID:179079; identified by sequence similarity; putative; 8-amino-7-oxononanoate synthase 1870113 bioF-3 2552390 bioF-3 Porphyromonas gingivalis W83 8-amino-7-oxononanoate synthase NP_905882.1 1868926 D 242619 CDS NP_905883.1 34541404 2552355 1870163..1870792 1 NC_002950.2 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1870792 udk 2552355 udk Porphyromonas gingivalis W83 uridine kinase NP_905883.1 1870163 D 242619 CDS NP_905884.1 34541405 2552405 1870834..1872021 1 NC_002950.2 hypothetical protein 1872021 2552405 PG1782 Porphyromonas gingivalis W83 hypothetical protein NP_905884.1 1870834 D 242619 CDS NP_905885.1 34541406 2551476 1872008..1872718 1 NC_002950.2 glycosyl transferase group 2 family protein 1872718 2551476 PG1783 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_905885.1 1872008 D 242619 CDS NP_905886.1 34541407 2551443 1872706..1873500 1 NC_002950.2 hypothetical protein 1873500 2551443 PG1784 Porphyromonas gingivalis W83 hypothetical protein NP_905886.1 1872706 D 242619 CDS NP_905887.1 34541408 2551369 1874498..1875382 1 NC_002950.2 hypothetical protein 1875382 2551369 PG1786 Porphyromonas gingivalis W83 hypothetical protein NP_905887.1 1874498 D 242619 CDS NP_905888.1 34541409 2552264 complement(1875531..1875998) 1 NC_002950.2 hypothetical protein 1875998 2552264 PG1787 Porphyromonas gingivalis W83 hypothetical protein NP_905888.1 1875531 R 242619 CDS NP_905889.1 34541410 2552253 1876116..1877387 1 NC_002950.2 similar to GB:L17071, SP:Q07602, GB:L17073, and PID:310302; identified by sequence similarity; putative; cysteine peptidase 1877387 2552253 PG1788 Porphyromonas gingivalis W83 cysteine peptidase NP_905889.1 1876116 D 242619 CDS NP_905890.1 34541411 2552250 complement(1877507..1879543) 1 NC_002950.2 peptidyl-dipeptidase Dcp 1879543 dcp-2 2552250 dcp-2 Porphyromonas gingivalis W83 peptidyl-dipeptidase Dcp NP_905890.1 1877507 R 242619 CDS NP_905891.1 34541412 2552275 complement(1879560..1881044) 1 NC_002950.2 hypothetical protein 1881044 2552275 PG1790 Porphyromonas gingivalis W83 hypothetical protein NP_905891.1 1879560 R 242619 CDS NP_905892.1 34541413 2552294 complement(1881041..1881256) 1 NC_002950.2 hypothetical protein 1881256 2552294 PG1791 Porphyromonas gingivalis W83 hypothetical protein NP_905892.1 1881041 R 242619 CDS NP_905893.1 34541414 2552234 1881762..1884065 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01695; sodium/hydrogen antiporter 1884065 2552234 PG1792 Porphyromonas gingivalis W83 sodium/hydrogen antiporter NP_905893.1 1881762 D 242619 CDS NP_905894.1 34541415 2552291 1884062..1886068 1 NC_002950.2 1,4-alpha-glucan branching protein 1886068 glgB 2552291 glgB Porphyromonas gingivalis W83 1,4-alpha-glucan branching protein NP_905894.1 1884062 D 242619 CDS NP_905895.1 34541416 2552230 1886118..1888898 1 NC_002950.2 similar to GB:X72760, SP:P55268, PID:1103585, PID:1335202, and PID:288401; identified by sequence similarity; putative; DNA polymerase type I 1888898 polA 2552230 polA Porphyromonas gingivalis W83 DNA polymerase type I NP_905895.1 1886118 D 242619 CDS NP_905896.1 34541417 2552322 complement(1889045..1889866) 1 NC_002950.2 hypothetical protein 1889866 2552322 PG1795 Porphyromonas gingivalis W83 hypothetical protein NP_905896.1 1889045 R 242619 CDS NP_905897.1 34541418 2552312 1890153..1893038 1 NC_002950.2 DNA-binding response regulator/sensor histidine kinase 1893038 2552312 PG1797 Porphyromonas gingivalis W83 DNA-binding response regulator/sensor histidine kinase NP_905897.1 1890153 D 242619 CDS NP_905898.1 34541419 2552319 complement(1893118..1894335) 1 NC_002950.2 hypothetical protein 1894335 2552319 PG1798 Porphyromonas gingivalis W83 hypothetical protein NP_905898.1 1893118 R 242619 CDS NP_905899.1 34541420 2552321 1894639..1894848 1 NC_002950.2 hypothetical protein 1894848 2552321 PG1799 Porphyromonas gingivalis W83 hypothetical protein NP_905899.1 1894639 D 242619 CDS NP_905900.1 34541421 2552309 1895086..1895676 1 NC_002950.2 similar to SP:P00437; identified by sequence similarity; putative; v-type ATPase subunit E 1895676 2552309 PG1801 Porphyromonas gingivalis W83 v-type ATPase subunit E NP_905900.1 1895086 D 242619 CDS NP_905901.1 34541422 2552303 1895680..1896618 1 NC_002950.2 hypothetical protein 1896618 2552303 PG1802 Porphyromonas gingivalis W83 hypothetical protein NP_905901.1 1895680 D 242619 CDS NP_905902.1 34541423 2552295 1896628..1898382 1 NC_002950.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 1898382 atpA 2552295 atpA Porphyromonas gingivalis W83 V-type ATP synthase subunit A NP_905902.1 1896628 D 242619 CDS NP_905903.1 34541424 2552293 1898394..1899713 1 NC_002950.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 1899713 atpB 2552293 atpB Porphyromonas gingivalis W83 V-type ATP synthase subunit B NP_905903.1 1898394 D 242619 CDS NP_905904.1 34541425 2552285 1899729..1900343 1 NC_002950.2 produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 1900343 atpD 2552285 atpD Porphyromonas gingivalis W83 V-type ATP synthase subunit D NP_905904.1 1899729 D 242619 CDS NP_905905.1 34541426 2552280 1900340..1902154 1 NC_002950.2 similar to SP:P19371; identified by sequence similarity; putative; v-type ATPase subunit I 1902154 atpI 2552280 atpI Porphyromonas gingivalis W83 v-type ATPase subunit I NP_905905.1 1900340 D 242619 CDS NP_905906.1 34541427 2552274 1902209..1902685 1 NC_002950.2 similar to GB:Z31397, PID:1335178, PID:1335181, PID:32850, PID:33129, PID:505450, PID:510299, PID:510301, PID:510303, PID:510392, PID:510394, PID:510396, PID:510398, PID:510400, PID:510404, PID:553403, PID:577484, PID:587249, PID:587259, PID:940518, PID:940520, PID:998277, GB:J05249, SP:P15927, and PID:337350; identified by sequence similarity; putative; v-type ATPase subunit K 1902685 atpK 2552274 atpK Porphyromonas gingivalis W83 v-type ATPase subunit K NP_905906.1 1902209 D 242619 CDS NP_905907.1 34541428 2552271 complement(1903045..1905333) 1 NC_002950.2 similar to GB:L28806, GB:Z29976, PID:454966, and PID:515737; identified by sequence similarity; putative; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 1905333 spoT 2552271 spoT Porphyromonas gingivalis W83 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase NP_905907.1 1903045 R 242619 CDS NP_905908.1 34541429 2552267 complement(1905581..1906126) 1 NC_002950.2 similar to SP:P37737, and PID:150760; identified by sequence similarity; putative; 2-oxoglutarate oxidoreductase subunit gamma 1906126 2552267 PG1809 Porphyromonas gingivalis W83 2-oxoglutarate oxidoreductase subunit gamma NP_905908.1 1905581 R 242619 CDS NP_905909.1 34541430 2552263 complement(1906155..1906847) 1 NC_002950.2 2-oxoglutarate oxidoreductase subunit beta 1906847 2552263 PG1810 Porphyromonas gingivalis W83 2-oxoglutarate oxidoreductase subunit beta NP_905909.1 1906155 R 242619 CDS NP_905910.1 34541431 2552258 1906943..1907035 1 NC_002950.2 hypothetical protein 1907035 2552258 PG1811 Porphyromonas gingivalis W83 hypothetical protein NP_905910.1 1906943 D 242619 CDS NP_905911.1 34541432 2552241 complement(1907136..1908197) 1 NC_002950.2 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 1908197 2552241 PG1812 Porphyromonas gingivalis W83 2-ketoisovalerate ferredoxin reductase NP_905911.1 1907136 R 242619 CDS NP_905912.1 34541433 2552005 complement(1908237..1908464) 1 NC_002950.2 similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; ferredoxin, 4Fe-4S 1908464 2552005 PG1813 Porphyromonas gingivalis W83 ferredoxin, 4Fe-4S NP_905912.1 1908237 R 242619 CDS NP_905913.1 34541434 2551365 complement(1908696..1910717) 1 NC_002950.2 similar to GB:X52947, GB:M65188, SP:P17302, PID:181209, and PID:29917; identified by sequence similarity; putative; DNA primase 1910717 dnaG 2551365 dnaG Porphyromonas gingivalis W83 DNA primase NP_905913.1 1908696 R 242619 CDS NP_905914.1 34541435 2552004 complement(1910759..1911523) 1 NC_002950.2 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1911523 kdsB 2552004 kdsB Porphyromonas gingivalis W83 3-deoxy-manno-octulosonate cytidylyltransferase NP_905914.1 1910759 R 242619 CDS NP_905915.1 34541436 2552006 complement(1911520..1912041) 1 NC_002950.2 identified by match to PFAM protein family HMM PF02525; quinone family NAD(P)H dehydrogenase 1912041 2552006 PG1816 Porphyromonas gingivalis W83 quinone family NAD(P)H dehydrogenase NP_905915.1 1911520 R 242619 CDS NP_905916.1 34541437 2551999 complement(1912310..1913125) 1 NC_002950.2 similar to SP:P30692, PID:45253, SP:P30692, and PID:45253; identified by sequence similarity; putative; hypothetical protein 1913125 2551999 PG1817 Porphyromonas gingivalis W83 hypothetical protein NP_905916.1 1912310 R 242619 CDS NP_905917.1 34541438 2552016 complement(1913118..1913834) 1 NC_002950.2 hypothetical protein 1913834 2552016 PG1818 Porphyromonas gingivalis W83 hypothetical protein NP_905917.1 1913118 R 242619 CDS NP_905918.1 34541439 2551987 complement(1913786..1914412) 1 NC_002950.2 hypothetical protein 1914412 2551987 PG1819 Porphyromonas gingivalis W83 hypothetical protein NP_905918.1 1913786 R 242619 CDS NP_905919.1 34541440 2551461 complement(1914483..1915979) 1 NC_002950.2 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 1915979 nrfA 2551461 nrfA Porphyromonas gingivalis W83 cytochrome c552 NP_905919.1 1914483 R 242619 CDS NP_905920.1 34541441 2552003 complement(1916001..1916612) 1 NC_002950.2 cytochrome c nitrite reductase small subunit NrfH 1916612 nrfH 2552003 nrfH Porphyromonas gingivalis W83 cytochrome c nitrite reductase small subunit NrfH NP_905920.1 1916001 R 242619 CDS NP_905921.1 34541442 2551970 1917457..1918110 1 NC_002950.2 hypothetical protein 1918110 2551970 PG1823 Porphyromonas gingivalis W83 hypothetical protein NP_905921.1 1917457 D 242619 CDS NP_905922.1 34541443 2551984 complement(1918243..1919520) 1 NC_002950.2 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1919520 eno 2551984 eno Porphyromonas gingivalis W83 phosphopyruvate hydratase NP_905922.1 1918243 R 242619 CDS NP_905923.1 34541444 2551942 complement(1919600..1919761) 1 NC_002950.2 hypothetical protein 1919761 2551942 PG1825 Porphyromonas gingivalis W83 hypothetical protein NP_905923.1 1919600 R 242619 CDS NP_905924.1 34541445 2551973 complement(1919736..1920155) 1 NC_002950.2 hypothetical protein 1920155 2551973 PG1826 Porphyromonas gingivalis W83 hypothetical protein NP_905924.1 1919736 R 242619 CDS NP_905925.1 34541446 2551964 1920154..1920795 1 NC_002950.2 ECF subfamily RNA polymerase sigma factor 1920795 2551964 PG1827 Porphyromonas gingivalis W83 ECF subfamily RNA polymerase sigma factor NP_905925.1 1920154 D 242619 CDS NP_905926.1 34541447 2551941 complement(1921014..1921226) 1 NC_002950.2 putative lipoprotein 1921226 2551941 PG1828 Porphyromonas gingivalis W83 putative lipoprotein NP_905926.1 1921014 R 242619 CDS NP_905927.1 34541448 2551945 complement(1921397..1923070) 1 NC_002950.2 similar to GB:M68061, SP:P04740, PID:147073, and PID:41881; identified by sequence similarity; putative; long-chain-fatty-acid--CoA ligase 1923070 2551945 PG1829 Porphyromonas gingivalis W83 long-chain-fatty-acid--CoA ligase NP_905927.1 1921397 R 242619 CDS NP_905928.1 34541449 2551932 complement(1923545..1925512) 1 NC_002950.2 ATP-dependent DNA helicase RecQ 1925512 recQ-2 2551932 recQ-2 Porphyromonas gingivalis W83 ATP-dependent DNA helicase RecQ NP_905928.1 1923545 R 242619 CDS NP_905929.1 34541450 2551919 1926295..1927110 1 NC_002950.2 similar to GB:M55263, SP:P22322, PID:143022, PID:403481, PID:1303801, GB:AL009126, GB:X51445, GB:X56653, GB:X51440, SP:P02735, PID:1160969, PID:337743, PID:36310, PID:36317, PID:36321, PID:758679, PID:758681, PID:758683, PID:825714, PID:825715, PID:825716, PID:825717, and PID:939926; identified by sequence similarity; putative; glycogen synthase-like protein 1927110 2551919 PG1834 Porphyromonas gingivalis W83 glycogen synthase-like protein NP_905929.1 1926295 D 242619 CDS NP_905930.1 34541451 2551904 1927213..1928580 1 NC_002950.2 putative lipoprotein 1928580 2551904 PG1835 Porphyromonas gingivalis W83 putative lipoprotein NP_905930.1 1927213 D 242619 CDS NP_905931.1 34541452 2551895 1928683..1929918 1 NC_002950.2 similar to GB:L05628, GB:X78338, SP:P33527, PID:1835659, and PID:1871200; identified by sequence similarity; putative; nucleoside permease NupG 1929918 nupG 2551895 nupG Porphyromonas gingivalis W83 nucleoside permease NupG NP_905931.1 1928683 D 242619 CDS NP_905932.1 34541453 2551934 1930477..1936794 1 NC_002950.2 similar to GB:D26185, SP:P26497, GB:M59938, PID:143640, PID:40031, PID:467380, and GB:AL009126; identified by sequence similarity; putative; hemagglutinin protein HagA 1936794 2551934 PG1837 Porphyromonas gingivalis W83 hemagglutinin protein HagA NP_905932.1 1930477 D 242619 CDS NP_905933.1 34541454 2551877 1937242..1937355 1 NC_002950.2 similar to SP:P31128; identified by sequence similarity; putative; hypothetical protein 1937355 2551877 PG1840 Porphyromonas gingivalis W83 hypothetical protein NP_905933.1 1937242 D 242619 CDS NP_905934.1 34541455 2551875 1937450..1938373 1 NC_002950.2 similar to GB:S48322, GB:X68059, SP:Q04968, SP:Q09088, GB:L36036, GB:S72439, GB:X62161, GB:X62387, GB:X65599, GB:X68540, GB:X69323, GB:X70365, GB:X81047, GB:Z29087, PID:1235758, PID:288383, PID:288389, PID:39387, PID:39389, PID:436060, PID:441227, PID:483557, PID:809623, PID:984066, PID:984072, PID:984074, PID:688403, PID:1762839, and PID:1762841; identified by sequence similarity; putative; hypothetical protein 1938373 2551875 PG1841 Porphyromonas gingivalis W83 hypothetical protein NP_905934.1 1937450 D 242619 CDS NP_905935.1 34541456 2551885 1938381..1939373 1 NC_002950.2 acetyltransferase 1939373 2551885 PG1842 Porphyromonas gingivalis W83 acetyltransferase NP_905935.1 1938381 D 242619 CDS NP_905936.1 34541457 2551848 1946177..1946314 1 NC_002950.2 hypothetical protein 1946314 2551848 PG1846 Porphyromonas gingivalis W83 hypothetical protein NP_905936.1 1946177 D 242619 CDS NP_905937.1 34541458 2551873 complement(1946317..1946697) 1 NC_002950.2 endoribonuclease L-PSP 1946697 2551873 PG1847 Porphyromonas gingivalis W83 endoribonuclease L-PSP NP_905937.1 1946317 R 242619 CDS NP_905938.1 34541459 2551837 complement(1946723..1947472) 1 NC_002950.2 RNA methyltransferase 1947472 2551837 PG1848 Porphyromonas gingivalis W83 RNA methyltransferase NP_905938.1 1946723 R 242619 CDS NP_905939.1 34541460 2551854 complement(1947469..1949124) 1 NC_002950.2 DNA repair protein RecN 1949124 recN 2551854 recN Porphyromonas gingivalis W83 DNA repair protein RecN NP_905939.1 1947469 R 242619 CDS NP_905940.1 34541461 2551851 complement(1949139..1950047) 1 NC_002950.2 hypothetical protein 1950047 2551851 PG1850 Porphyromonas gingivalis W83 hypothetical protein NP_905940.1 1949139 R 242619 CDS NP_905941.1 34541462 2551824 complement(1950044..1951258) 1 NC_002950.2 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1951258 coaBC 2551824 coaBC Porphyromonas gingivalis W83 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase NP_905941.1 1950044 R 242619 CDS NP_905942.1 34541463 2551838 complement(1951284..1952063) 1 NC_002950.2 similar to GB:X52592, and PID:46994; identified by sequence similarity; putative; exonuclease 1952063 2551838 PG1852 Porphyromonas gingivalis W83 exonuclease NP_905942.1 1951284 R 242619 CDS NP_905943.1 34541464 2551836 complement(1952076..1953209) 1 NC_002950.2 DNA polymerase III subunit beta 1953209 dnaN 2551836 dnaN Porphyromonas gingivalis W83 DNA polymerase III subunit beta NP_905943.1 1952076 R 242619 CDS NP_905944.1 34541465 2551826 complement(1953415..1953972) 1 NC_002950.2 similar to GB:U02373, PID:407279, and PID:1100880; identified by sequence similarity; putative; 5-formyltetrahydrofolate cyclo-ligase 1953972 2551826 PG1854 Porphyromonas gingivalis W83 5-formyltetrahydrofolate cyclo-ligase NP_905944.1 1953415 R 242619 CDS NP_905945.1 34541466 2551827 complement(1953932..1955566) 1 NC_002950.2 carboxyl-terminal protease 1955566 2551827 PG1855 Porphyromonas gingivalis W83 carboxyl-terminal protease NP_905945.1 1953932 R 242619 CDS NP_905946.1 34541467 2551822 complement(1955574..1956029) 1 NC_002950.2 similar to SP:P13063, and SP:P13064; identified by sequence similarity; putative; cytidine/deoxycytidylate deaminase 1956029 2551822 PG1856 Porphyromonas gingivalis W83 cytidine/deoxycytidylate deaminase NP_905946.1 1955574 R 242619 CDS NP_905947.1 34541468 2551814 complement(1956110..1956463) 1 NC_002950.2 similar to GP:19916677; identified by sequence similarity; putative; hypothetical protein 1956463 2551814 PG1857 Porphyromonas gingivalis W83 hypothetical protein NP_905947.1 1956110 R 242619 CDS NP_905948.1 34541469 2551815 complement(1956628..1957125) 1 NC_002950.2 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1957125 2551815 PG1858 Porphyromonas gingivalis W83 flavodoxin FldA NP_905948.1 1956628 R 242619 CDS NP_905949.1 34541470 2551813 complement(1957264..1958424) 1 NC_002950.2 glycerate kinase 1958424 2551813 PG1859 Porphyromonas gingivalis W83 glycerate kinase NP_905949.1 1957264 R 242619 CDS NP_905950.1 34541471 2551808 complement(1958664..1959848) 1 NC_002950.2 hypothetical protein 1959848 2551808 PG1860 Porphyromonas gingivalis W83 hypothetical protein NP_905950.1 1958664 R 242619 CDS NP_905951.1 34541472 2551805 complement(1959977..1960147) 1 NC_002950.2 hypothetical protein 1960147 2551805 PG1861 Porphyromonas gingivalis W83 hypothetical protein NP_905951.1 1959977 R 242619 CDS NP_905952.1 34541473 2551800 complement(1960160..1960453) 1 NC_002950.2 hypothetical protein 1960453 2551800 PG1862 Porphyromonas gingivalis W83 hypothetical protein NP_905952.1 1960160 R 242619 CDS NP_905953.1 34541474 2551798 complement(1960454..1960606) 1 NC_002950.2 hypothetical protein 1960606 2551798 PG1863 Porphyromonas gingivalis W83 hypothetical protein NP_905953.1 1960454 R 242619 CDS NP_905954.1 34541475 2551797 complement(1960599..1964399) 1 NC_002950.2 leucine-rich protein 1964399 2551797 PG1864 Porphyromonas gingivalis W83 leucine-rich protein NP_905954.1 1960599 R 242619 CDS NP_905955.1 34541476 2551784 1964671..1964796 1 NC_002950.2 hypothetical protein 1964796 2551784 PG1866 Porphyromonas gingivalis W83 hypothetical protein NP_905955.1 1964671 D 242619 CDS NP_905956.1 34541477 2551791 complement(1965188..1965709) 1 NC_002950.2 similar to GB:L11373, GB:L11371, GB:L11372, PID:307329, PID:387677, GB:L11373, GB:L11371, GB:L11372, PID:307329, and PID:387677; identified by sequence similarity; putative; hypothetical protein 1965709 2551791 PG1868 Porphyromonas gingivalis W83 hypothetical protein NP_905956.1 1965188 R 242619 CDS NP_905957.1 34541478 2551795 complement(1965745..1965912) 1 NC_002950.2 hypothetical protein 1965912 2551795 PG1869 Porphyromonas gingivalis W83 hypothetical protein NP_905957.1 1965745 R 242619 CDS NP_905958.1 34541479 2551767 complement(1965958..1966617) 1 NC_002950.2 similar to SP:P11430, SP:P16529, GB:S51490, GB:D00217, and PID:262707; identified by sequence similarity; putative; UbiE/COQ5 family methlytransferase 1966617 2551767 PG1870 Porphyromonas gingivalis W83 UbiE/COQ5 family methlytransferase NP_905958.1 1965958 R 242619 CDS NP_905959.1 34541480 2551771 complement(1966659..1966949) 1 NC_002950.2 hypothetical protein 1966949 2551771 PG1871 Porphyromonas gingivalis W83 hypothetical protein NP_905959.1 1966659 R 242619 CDS NP_905960.1 34541481 2551777 complement(1967022..1969001) 1 NC_002950.2 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1969001 hutU 2551777 hutU Porphyromonas gingivalis W83 urocanate hydratase NP_905960.1 1967022 R 242619 CDS NP_905961.1 34541482 2551779 complement(1969343..1969750) 1 NC_002950.2 hypothetical protein 1969750 2551779 PG1874 Porphyromonas gingivalis W83 hypothetical protein NP_905961.1 1969343 R 242619 CDS NP_905962.1 34541483 2551780 complement(1969737..1970711) 1 NC_002950.2 hemolysin 1970711 2551780 PG1875 Porphyromonas gingivalis W83 hemolysin NP_905962.1 1969737 R 242619 CDS NP_905963.1 34541484 2551759 complement(1970723..1971550) 1 NC_002950.2 similar to GB:L20470, GB:L22431, GB:D16495, GB:D16508, GB:D16510, GB:D16512, GB:D16514, GB:D16516, GB:D16518, GB:D16520, GB:D16522, GB:D16523, GB:D16524, GB:D16525, GB:D16526, GB:D16527, GB:D16528, GB:D16529, GB:D16530, GB:D16531, GB:D16532, GB:D16493, SP:P98155, PID:391734, PID:407221, PID:409426, and PID:437387; identified by sequence similarity; putative; hypothetical protein 1971550 2551759 PG1876 Porphyromonas gingivalis W83 hypothetical protein NP_905963.1 1970723 R 242619 CDS NP_905964.1 34541485 2551765 complement(1971579..1972937) 1 NC_002950.2 Na+/H+ antiporter 1972937 nhaA 2551765 nhaA Porphyromonas gingivalis W83 Na+/H+ antiporter NP_905964.1 1971579 R 242619 CDS NP_905965.1 34541486 2551751 1973068..1974540 1 NC_002950.2 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1974540 cysS 2551751 cysS Porphyromonas gingivalis W83 cysteinyl-tRNA synthetase NP_905965.1 1973068 D 242619 CDS NP_905966.1 34541487 2551754 1974591..1975610 1 NC_002950.2 similar to GB:M36711, GB:M61156, GB:X77343, and SP:P05549; identified by sequence similarity; putative; hypothetical protein 1975610 2551754 PG1879 Porphyromonas gingivalis W83 hypothetical protein NP_905966.1 1974591 D 242619 CDS NP_905967.1 34541488 2551758 1975621..1976631 1 NC_002950.2 similar to SP:P02928, GB:M12644, GB:J01648, GB:M12637, GB:V00303, GB:X03923, and PID:146770; identified by sequence similarity; putative; glycosyl transferase group 2 family protein 1976631 2551758 PG1880 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_905967.1 1975621 D 242619 CDS NP_905968.1 34541489 2551756 1976664..1978106 1 NC_002950.2 hypothetical protein 1978106 2551756 PG1881 Porphyromonas gingivalis W83 hypothetical protein NP_905968.1 1976664 D 242619 CDS NP_905969.1 34541490 2551741 complement(1979058..1981082) 1 NC_002950.2 similar to GB:M63675, SP:Q00561, PID:149367, and PID:149422; identified by sequence similarity; putative; alpha-L-fucosidase 1981082 2551741 PG1884 Porphyromonas gingivalis W83 alpha-L-fucosidase NP_905969.1 1979058 R 242619 CDS NP_905970.1 34541491 2551750 complement(1981155..1983242) 1 NC_002950.2 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1983242 ppk 2551750 ppk Porphyromonas gingivalis W83 polyphosphate kinase NP_905970.1 1981155 R 242619 CDS NP_905971.1 34541492 2551727 complement(1983406..1984626) 1 NC_002950.2 GTP-binding protein HflX 1984626 hflX 2551727 hflX Porphyromonas gingivalis W83 GTP-binding protein HflX NP_905971.1 1983406 R 242619 CDS NP_905972.1 34541493 2551734 1984705..1985739 1 NC_002950.2 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1985739 2551734 PG1887 Porphyromonas gingivalis W83 tRNA 2-selenouridine synthase NP_905972.1 1984705 D 242619 CDS NP_905973.1 34541494 2551737 1985736..1986350 1 NC_002950.2 hypothetical protein 1986350 2551737 PG1888 Porphyromonas gingivalis W83 hypothetical protein NP_905973.1 1985736 D 242619 CDS NP_905974.1 34541495 2551714 1986491..1987150 1 NC_002950.2 hypothetical protein 1987150 2551714 PG1889 Porphyromonas gingivalis W83 hypothetical protein NP_905974.1 1986491 D 242619 CDS NP_905975.1 34541496 2551715 1987705..1987932 1 NC_002950.2 putative lipoprotein 1987932 2551715 PG1890 Porphyromonas gingivalis W83 putative lipoprotein NP_905975.1 1987705 D 242619 CDS NP_905976.1 34541497 2551719 1987996..1988505 1 NC_002950.2 hypothetical protein 1988505 2551719 PG1891 Porphyromonas gingivalis W83 hypothetical protein NP_905976.1 1987996 D 242619 CDS NP_905977.1 34541498 2551696 1989565..1989951 1 NC_002950.2 hypothetical protein 1989951 2551696 PG1892 Porphyromonas gingivalis W83 hypothetical protein NP_905977.1 1989565 D 242619 CDS NP_905978.1 34541499 2551698 1991100..1991873 1 NC_002950.2 hypothetical protein 1991873 2551698 PG1893 Porphyromonas gingivalis W83 hypothetical protein NP_905978.1 1991100 D 242619 CDS NP_905979.1 34541500 2551701 1992417..1992995 1 NC_002950.2 hypothetical protein 1992995 2551701 PG1894 Porphyromonas gingivalis W83 hypothetical protein NP_905979.1 1992417 D 242619 CDS NP_905980.1 34541501 2551673 1993602..1994300 1 NC_002950.2 hypothetical protein 1994300 2551673 PG1895 Porphyromonas gingivalis W83 hypothetical protein NP_905980.1 1993602 D 242619 CDS NP_905981.1 34541502 2551678 1994726..1996015 1 NC_002950.2 methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1996015 metK 2551678 metK Porphyromonas gingivalis W83 S-adenosylmethionine synthetase NP_905981.1 1994726 D 242619 CDS NP_905982.1 34541503 2551674 complement(1996143..1996820) 1 NC_002950.2 similar to SP:P26236, and PID:46105; identified by sequence similarity; putative; thiamin pyrophosphokinase catalytic subunit 1996820 2551674 PG1897 Porphyromonas gingivalis W83 thiamin pyrophosphokinase catalytic subunit NP_905982.1 1996143 R 242619 CDS NP_905983.1 34541504 2551690 complement(1996817..1997425) 1 NC_002950.2 transporter 1997425 2551690 PG1898 Porphyromonas gingivalis W83 transporter NP_905983.1 1996817 R 242619 CDS NP_905984.1 34541505 2551669 complement(1997430..1999814) 1 NC_002950.2 TonB-dependent receptor 1999814 2551669 PG1899 Porphyromonas gingivalis W83 TonB-dependent receptor NP_905984.1 1997430 R 242619 CDS NP_905985.1 34541506 2551670 complement(1999889..2000836) 1 NC_002950.2 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 2000836 2551670 PG1900 Porphyromonas gingivalis W83 ribosome-associated GTPase NP_905985.1 1999889 R 242619 CDS NP_905986.2 161579528 2551651 complement(2000921..2001481) 1 NC_002950.2 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2001481 frr 2551651 frr Porphyromonas gingivalis W83 ribosome recycling factor NP_905986.2 2000921 R 242619 CDS NP_905987.1 34541508 2551652 complement(2001518..2002237) 1 NC_002950.2 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2002237 pyrH 2551652 pyrH Porphyromonas gingivalis W83 uridylate kinase NP_905987.1 2001518 R 242619 CDS NP_905988.1 34541509 2551667 complement(2002320..2004311) 1 NC_002950.2 similar to GB:X58178, GB:U20101, GB:U20102, GB:U20103, GB:U20104, GB:X66816, and PID:47363; identified by sequence similarity; putative; hypothetical protein 2004311 2551667 PG1903 Porphyromonas gingivalis W83 hypothetical protein NP_905988.1 2002320 R 242619 CDS NP_905989.1 34541510 2551668 complement(2004522..2004851) 1 NC_002950.2 hypothetical protein 2004851 2551668 PG1904 Porphyromonas gingivalis W83 hypothetical protein NP_905989.1 2004522 R 242619 CDS NP_905990.1 34541511 2551646 2005547..2006632 1 NC_002950.2 ISPg1, transposase 2006632 2551646 PG1906 Porphyromonas gingivalis W83 ISPg1, transposase NP_905990.1 2005547 D 242619 CDS NP_905991.1 34541512 2551637 2007935..2008780 1 NC_002950.2 hypothetical protein 2008780 2551637 PG1908 Porphyromonas gingivalis W83 hypothetical protein NP_905991.1 2007935 D 242619 CDS NP_905992.1 34541513 2551616 complement(2010372..2010854) 1 NC_002950.2 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2010854 rplQ 2551616 rplQ Porphyromonas gingivalis W83 50S ribosomal protein L17 NP_905992.1 2010372 R 242619 CDS NP_905993.1 34541514 2551615 complement(2010860..2011852) 1 NC_002950.2 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2011852 rpoA 2551615 rpoA Porphyromonas gingivalis W83 DNA-directed RNA polymerase subunit alpha NP_905993.1 2010860 R 242619 CDS NP_905994.1 34541515 2551581 complement(2011865..2012470) 1 NC_002950.2 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2012470 rpsD 2551581 rpsD Porphyromonas gingivalis W83 30S ribosomal protein S4 NP_905994.1 2011865 R 242619 CDS NP_905995.1 34541516 2551583 complement(2012630..2013016) 1 NC_002950.2 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2013016 rpsK 2551583 rpsK Porphyromonas gingivalis W83 30S ribosomal protein S11 NP_905995.1 2012630 R 242619 CDS NP_905996.1 34541517 2551582 complement(2013028..2013408) 1 NC_002950.2 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 2013408 rpsM 2551582 rpsM Porphyromonas gingivalis W83 30S ribosomal protein S13 NP_905996.1 2013028 R 242619 CDS NP_905997.1 34541518 2551561 complement(2013441..2013557) 1 NC_002950.2 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 2013557 rpmJ 2551561 rpmJ Porphyromonas gingivalis W83 50S ribosomal protein L36 NP_905997.1 2013441 R 242619 CDS NP_905998.1 34541519 2551585 complement(2013574..2013792) 1 NC_002950.2 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2013792 infA 2551585 infA Porphyromonas gingivalis W83 translation initiation factor IF-1 NP_905998.1 2013574 R 242619 CDS NP_905999.1 34541520 2551573 complement(2013795..2014580) 1 NC_002950.2 methionine aminopeptidase 2014580 map 2551573 map Porphyromonas gingivalis W83 methionine aminopeptidase NP_905999.1 2013795 R 242619 CDS NP_906000.1 34541521 2551551 complement(2014580..2015920) 1 NC_002950.2 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2015920 secY 2551551 secY Porphyromonas gingivalis W83 preprotein translocase subunit SecY NP_906000.1 2014580 R 242619 CDS NP_906001.1 34541522 2551556 complement(2015925..2016371) 1 NC_002950.2 late assembly protein; 50S ribosomal protein L15 2016371 rplO 2551556 rplO Porphyromonas gingivalis W83 50S ribosomal protein L15 NP_906001.1 2015925 R 242619 CDS NP_906002.1 34541523 2551555 complement(2016397..2016573) 1 NC_002950.2 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 2016573 rpmD 2551555 rpmD Porphyromonas gingivalis W83 50S ribosomal protein L30 NP_906002.1 2016397 R 242619 CDS NP_906003.1 34541524 2551559 complement(2016593..2017111) 1 NC_002950.2 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2017111 rpsE 2551559 rpsE Porphyromonas gingivalis W83 30S ribosomal protein S5 NP_906003.1 2016593 R 242619 CDS NP_906004.1 34541525 2551528 complement(2017117..2017461) 1 NC_002950.2 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2017461 rplR 2551528 rplR Porphyromonas gingivalis W83 50S ribosomal protein L18 NP_906004.1 2017117 R 242619 CDS NP_906005.1 34541526 2551539 complement(2017480..2018031) 1 NC_002950.2 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2018031 rplF 2551539 rplF Porphyromonas gingivalis W83 50S ribosomal protein L6 NP_906005.1 2017480 R 242619 CDS NP_906006.1 34541527 2552212 complement(2018050..2018445) 1 NC_002950.2 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2018445 rpsH 2552212 rpsH Porphyromonas gingivalis W83 30S ribosomal protein S8 NP_906006.1 2018050 R 242619 CDS NP_906007.1 34541528 2552222 complement(2018496..2018765) 1 NC_002950.2 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 2018765 rpsN 2552222 rpsN Porphyromonas gingivalis W83 30S ribosomal protein S14 NP_906007.1 2018496 R 242619 CDS NP_906008.1 34541529 2552200 complement(2018767..2019327) 1 NC_002950.2 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2019327 rplE 2552200 rplE Porphyromonas gingivalis W83 50S ribosomal protein L5 NP_906008.1 2018767 R 242619 CDS NP_906009.1 34541530 2552228 complement(2019327..2019647) 1 NC_002950.2 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2019647 rplX 2552228 rplX Porphyromonas gingivalis W83 50S ribosomal protein L24 NP_906009.1 2019327 R 242619 CDS NP_906010.1 34541531 2552219 complement(2019670..2020035) 1 NC_002950.2 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2020035 rplN 2552219 rplN Porphyromonas gingivalis W83 50S ribosomal protein L14 NP_906010.1 2019670 R 242619 CDS NP_906011.1 34541532 2552209 complement(2020037..2020291) 1 NC_002950.2 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2020291 rpsQ 2552209 rpsQ Porphyromonas gingivalis W83 30S ribosomal protein S17 NP_906011.1 2020037 R 242619 CDS NP_906012.1 34541533 2552215 complement(2020305..2020499) 1 NC_002950.2 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2020499 rpmC 2552215 rpmC Porphyromonas gingivalis W83 50S ribosomal protein L29 NP_906012.1 2020305 R 242619 CDS NP_906013.1 34541534 2552217 complement(2020505..2020939) 1 NC_002950.2 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 2020939 rplP 2552217 rplP Porphyromonas gingivalis W83 50S ribosomal protein L16 NP_906013.1 2020505 R 242619 CDS NP_906014.1 34541535 2552204 complement(2020960..2021700) 1 NC_002950.2 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2021700 rpsC 2552204 rpsC Porphyromonas gingivalis W83 30S ribosomal protein S3 NP_906014.1 2020960 R 242619 CDS NP_906015.1 34541536 2552207 complement(2021707..2022057) 1 NC_002950.2 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2022057 rplV 2552207 rplV Porphyromonas gingivalis W83 50S ribosomal protein L22 NP_906015.1 2021707 R 242619 CDS NP_906016.1 34541537 2552202 complement(2022166..2022435) 1 NC_002950.2 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2022435 rpsS 2552202 rpsS Porphyromonas gingivalis W83 30S ribosomal protein S19 NP_906016.1 2022166 R 242619 CDS NP_906017.1 34541538 2552203 complement(2022458..2023282) 1 NC_002950.2 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2023282 rplB 2552203 rplB Porphyromonas gingivalis W83 50S ribosomal protein L2 NP_906017.1 2022458 R 242619 CDS NP_906018.1 34541539 2551540 complement(2023289..2023582) 1 NC_002950.2 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2023582 rplW 2551540 rplW Porphyromonas gingivalis W83 50S ribosomal protein L23 NP_906018.1 2023289 R 242619 CDS NP_906019.1 34541540 2551995 complement(2023597..2024226) 1 NC_002950.2 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2024226 rplD 2551995 rplD Porphyromonas gingivalis W83 50S ribosomal protein L4 NP_906019.1 2023597 R 242619 CDS NP_906020.1 34541541 2552196 complement(2024226..2024843) 1 NC_002950.2 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2024843 rplC 2552196 rplC Porphyromonas gingivalis W83 50S ribosomal protein L3 NP_906020.1 2024226 R 242619 CDS NP_906021.1 34541542 2552192 complement(2024866..2025171) 1 NC_002950.2 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2025171 rpsJ 2552192 rpsJ Porphyromonas gingivalis W83 30S ribosomal protein S10 NP_906021.1 2024866 R 242619 CDS NP_906022.1 34541543 2552187 complement(2025187..2027310) 1 NC_002950.2 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 2027310 fusA 2552187 fusA Porphyromonas gingivalis W83 elongation factor G NP_906022.1 2025187 R 242619 CDS NP_906023.1 34541544 2552166 complement(2027323..2027799) 1 NC_002950.2 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 2027799 rpsG 2552166 rpsG Porphyromonas gingivalis W83 30S ribosomal protein S7 NP_906023.1 2027323 R 242619 CDS NP_906024.1 34541545 2552165 complement(2028036..2028440) 1 NC_002950.2 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 2028440 rpsL 2552165 rpsL Porphyromonas gingivalis W83 30S ribosomal protein S12 NP_906024.1 2028036 R 242619 CDS NP_906025.1 34541546 2552167 complement(2029064..2030350) 1 NC_002950.2 hypothetical protein 2030350 2552167 PG1943 Porphyromonas gingivalis W83 hypothetical protein NP_906025.1 2029064 R 242619 CDS NP_906026.1 34541547 2552164 2030556..2031815 1 NC_002950.2 similar to GB:M15815, SP:P10336, PID:142352, and PID:142385; identified by sequence similarity; putative; 3-phosphoshikimate 1-carboxyvinyltransferase 2031815 aroA 2552164 aroA Porphyromonas gingivalis W83 3-phosphoshikimate 1-carboxyvinyltransferase NP_906026.1 2030556 D 242619 CDS NP_906027.1 34541548 2552163 2031837..2032280 1 NC_002950.2 hypothetical protein 2032280 2552163 PG1945 Porphyromonas gingivalis W83 hypothetical protein NP_906027.1 2031837 D 242619 CDS NP_906028.1 34541549 2552162 2032273..2033079 1 NC_002950.2 similar to SP:P33786, and PID:48912; identified by sequence similarity; putative; ABC transporter 2033079 2552162 PG1946 Porphyromonas gingivalis W83 ABC transporter NP_906028.1 2032273 D 242619 CDS NP_906029.1 34541550 2552160 2033072..2036554 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01696; hypothetical protein 2036554 2552160 PG1947 Porphyromonas gingivalis W83 hypothetical protein NP_906029.1 2033072 D 242619 CDS NP_906030.1 34541551 2552159 2036579..2038000 1 NC_002950.2 putative lipoprotein 2038000 2552159 PG1948 Porphyromonas gingivalis W83 putative lipoprotein NP_906030.1 2036579 D 242619 CDS NP_906031.1 34541552 2552158 complement(2038274..2039278) 1 NC_002950.2 similar to GB:M19169, GB:J03870, SP:P01037, PID:337752, and PID:386825; identified by sequence similarity; putative; malate dehydrogenase 2039278 mdh 2552158 mdh Porphyromonas gingivalis W83 malate dehydrogenase NP_906031.1 2038274 R 242619 CDS NP_906032.1 34541553 2552188 2039740..2040900 1 NC_002950.2 similar to GB:M80712, SP:P23619, and PID:141831; identified by sequence similarity; putative; hypothetical protein 2040900 2552188 PG1950 Porphyromonas gingivalis W83 hypothetical protein NP_906032.1 2039740 D 242619 CDS NP_906033.1 34541554 2552182 2041282..2042982 1 NC_002950.2 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2042982 glnS 2552182 glnS Porphyromonas gingivalis W83 glutaminyl-tRNA synthetase NP_906033.1 2041282 D 242619 CDS NP_906034.1 34541555 2553372 2043010..2043657 1 NC_002950.2 similar to GB:X07856, and PID:44531; identified by sequence similarity; putative; DedA family protein 2043657 2553372 PG1952 Porphyromonas gingivalis W83 DedA family protein NP_906034.1 2043010 D 242619 CDS NP_906035.1 34541556 2553364 2043714..2044649 1 NC_002950.2 similar to GB:M27725, SP:P13719, and PID:145697; identified by sequence similarity; putative; hypothetical protein 2044649 2553364 PG1953 Porphyromonas gingivalis W83 hypothetical protein NP_906035.1 2043714 D 242619 CDS NP_906036.1 34541557 2553356 2044653..2045672 1 NC_002950.2 NAD dependent epimerase/reductase-like protein 2045672 2553356 PG1954 Porphyromonas gingivalis W83 NAD dependent epimerase/reductase-like protein NP_906036.1 2044653 D 242619 CDS NP_906037.1 34541558 2553342 complement(2046305..2047600) 1 NC_002950.2 4-hydroxybutyrate CoA-transferase 2047600 abfT-2 2553342 abfT-2 Porphyromonas gingivalis W83 4-hydroxybutyrate CoA-transferase NP_906037.1 2046305 R 242619 CDS NP_906038.1 34541559 2553322 complement(2048307..2048495) 1 NC_002950.2 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2048495 rpmG 2553322 rpmG Porphyromonas gingivalis W83 50S ribosomal protein L33 NP_906038.1 2048307 R 242619 CDS NP_906039.1 34541560 2553311 complement(2048514..2048753) 1 NC_002950.2 required for 70S ribosome assembly; 50S ribosomal protein L28 2048753 rpmB 2553311 rpmB Porphyromonas gingivalis W83 50S ribosomal protein L28 NP_906039.1 2048514 R 242619 CDS NP_906040.1 34541561 2553301 complement(2048976..2051243) 1 NC_002950.2 hypothetical protein 2051243 2553301 PG1961 Porphyromonas gingivalis W83 hypothetical protein NP_906040.1 2048976 R 242619 CDS NP_906041.1 34541562 2553280 2052478..2053053 1 NC_002950.2 similar to SP:P37719, GB:X54676, and PID:455537; identified by sequence similarity; putative; Sua5/YciO/YrdC/YwlC family protein 2053053 2553280 PG1963 Porphyromonas gingivalis W83 Sua5/YciO/YrdC/YwlC family protein NP_906041.1 2052478 D 242619 CDS NP_906042.1 34541563 2553273 2053050..2054456 1 NC_002950.2 sugar transferase 2054456 2553273 PG1964 Porphyromonas gingivalis W83 sugar transferase NP_906042.1 2053050 D 242619 CDS NP_906043.1 34541564 2552148 complement(2056208..2057014) 1 NC_002950.2 similar to GB:X54868, SP:P26715, PID:35059, GB:X54868, SP:P26715, and PID:35059; identified by sequence similarity; putative; hypothetical protein 2057014 2552148 PG1966 Porphyromonas gingivalis W83 hypothetical protein NP_906043.1 2056208 R 242619 CDS NP_906044.1 34541565 2552147 2057308..2058195 1 NC_002950.2 similar to GB:L12710, and PID:414576; identified by sequence similarity; putative; hypothetical protein 2058195 2552147 PG1967 Porphyromonas gingivalis W83 hypothetical protein NP_906044.1 2057308 D 242619 CDS NP_906045.1 34541566 2552146 complement(2058550..2058654) 1 NC_002950.2 hypothetical protein 2058654 2552146 PG1968 Porphyromonas gingivalis W83 hypothetical protein NP_906045.1 2058550 R 242619 CDS NP_906046.1 34541567 2552145 complement(2058703..2059605) 1 NC_002950.2 hypothetical protein 2059605 2552145 PG1969 Porphyromonas gingivalis W83 hypothetical protein NP_906046.1 2058703 R 242619 CDS NP_906047.1 34541568 2552144 complement(2059574..2059873) 1 NC_002950.2 hypothetical protein 2059873 2552144 PG1970 Porphyromonas gingivalis W83 hypothetical protein NP_906047.1 2059574 R 242619 CDS NP_906048.1 34541569 2552143 2060142..2061263 1 NC_002950.2 hemagglutinin protein HagB 2061263 2552143 PG1972 Porphyromonas gingivalis W83 hemagglutinin protein HagB NP_906048.1 2060142 D 242619 CDS NP_906049.1 34541570 2553259 complement(2062054..2063145) 1 NC_002950.2 hypothetical protein 2063145 2553259 PG1974 Porphyromonas gingivalis W83 hypothetical protein NP_906049.1 2062054 R 242619 CDS NP_906050.1 34541571 2553237 2063358..2064410 1 NC_002950.2 similar to GB:M76559, SP:P54289, and PID:179762; identified by sequence similarity; putative; hemagglutinin protein HagC 2064410 2553237 PG1975 Porphyromonas gingivalis W83 hemagglutinin protein HagC NP_906050.1 2063358 D 242619 CDS NP_906051.1 34541572 2553218 complement(2064777..2066783) 1 NC_002950.2 hypothetical protein 2066783 2553218 PG1977 Porphyromonas gingivalis W83 hypothetical protein NP_906051.1 2064777 R 242619 CDS NP_906052.1 34541573 2553228 complement(2066813..2067427) 1 NC_002950.2 hypothetical protein 2067427 2553228 PG1978 Porphyromonas gingivalis W83 hypothetical protein NP_906052.1 2066813 R 242619 CDS NP_906053.1 34541574 2553216 2067412..2067579 1 NC_002950.2 hypothetical protein 2067579 2553216 PG1979 Porphyromonas gingivalis W83 hypothetical protein NP_906053.1 2067412 D 242619 CDS NP_906054.1 34541575 2553204 complement(2067850..2068020) 1 NC_002950.2 hypothetical protein 2068020 2553204 PG1980 Porphyromonas gingivalis W83 hypothetical protein NP_906054.1 2067850 R 242619 CDS NP_906055.1 34541576 2553196 complement(2069305..2069595) 1 NC_002950.2 similar to SP:P30329, and PID:150728; identified by sequence similarity; putative; CRISPR-associated Cas2 family protein 2069595 cas2-1 2553196 cas2-1 Porphyromonas gingivalis W83 CRISPR-associated Cas2 family protein NP_906055.1 2069305 R 242619 CDS NP_906056.1 34541577 2552124 complement(2069615..2072710) 1 NC_002950.2 CRISPR-associated Cas1 family protein 2072710 2552124 PG1982 Porphyromonas gingivalis W83 CRISPR-associated Cas1 family protein NP_906056.1 2069615 R 242619 CDS NP_906057.1 34541578 2552123 complement(2072771..2073532) 1 NC_002950.2 CRISPR-associated Cmr5 family protein 2073532 2552123 PG1983 Porphyromonas gingivalis W83 CRISPR-associated Cmr5 family protein NP_906057.1 2072771 R 242619 CDS NP_906058.1 34541579 2552122 complement(2073529..2073972) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01881; hypothetical protein 2073972 2552122 PG1984 Porphyromonas gingivalis W83 hypothetical protein NP_906058.1 2073529 R 242619 CDS NP_906059.1 34541580 2552121 complement(2073969..2074670) 1 NC_002950.2 CRISPR-associated Cmr4 family protein 2074670 2552121 PG1985 Porphyromonas gingivalis W83 CRISPR-associated Cmr4 family protein NP_906059.1 2073969 R 242619 CDS NP_906060.1 34541581 2552120 complement(2074684..2075874) 1 NC_002950.2 CRISPR-associated Cmr3 family protein 2075874 2552120 PG1986 Porphyromonas gingivalis W83 CRISPR-associated Cmr3 family protein NP_906060.1 2074684 R 242619 CDS NP_906061.1 34541582 2552119 complement(2075876..2077522) 1 NC_002950.2 CRISPR-associated Csm1 family protein 2077522 2552119 PG1987 Porphyromonas gingivalis W83 CRISPR-associated Csm1 family protein NP_906061.1 2075876 R 242619 CDS NP_906062.1 34541583 2552135 complement(2077515..2078957) 1 NC_002950.2 hypothetical protein 2078957 2552135 PG1988 Porphyromonas gingivalis W83 hypothetical protein NP_906062.1 2077515 R 242619 CDS NP_906063.1 34541584 2552130 complement(2078973..2079191) 1 NC_002950.2 hypothetical protein 2079191 2552130 PG1989 Porphyromonas gingivalis W83 hypothetical protein NP_906063.1 2078973 R 242619 CDS NP_906064.1 34541585 2553190 2081550..2083427 1 NC_002950.2 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2083427 gidA 2553190 gidA Porphyromonas gingivalis W83 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA NP_906064.1 2081550 D 242619 CDS NP_906065.1 34541586 2553185 2083461..2085260 1 NC_002950.2 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2085260 uvrC 2553185 uvrC Porphyromonas gingivalis W83 excinuclease ABC subunit C NP_906065.1 2083461 D 242619 CDS NP_906066.1 34541587 2553176 2085267..2085719 1 NC_002950.2 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2085719 dtd 2553176 dtd Porphyromonas gingivalis W83 D-tyrosyl-tRNA(Tyr) deacylase NP_906066.1 2085267 D 242619 CDS NP_906067.1 34541588 2553168 2085724..2086074 1 NC_002950.2 similar to GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, and PID:553291; identified by sequence similarity; putative; hypothetical protein 2086074 2553168 PG1995 Porphyromonas gingivalis W83 hypothetical protein NP_906067.1 2085724 D 242619 CDS NP_906068.1 34541589 2553165 2086061..2086930 1 NC_002950.2 similar to GB:S68409, and PID:545046; identified by sequence similarity; putative; deoxyribose-phosphate aldolase 2086930 deoC 2553165 deoC Porphyromonas gingivalis W83 deoxyribose-phosphate aldolase NP_906068.1 2086061 D 242619 CDS NP_906069.1 34541590 2553150 2086971..2087132 1 NC_002950.2 hypothetical protein 2087132 2553150 PG1997 Porphyromonas gingivalis W83 hypothetical protein NP_906069.1 2086971 D 242619 CDS NP_906070.1 34541591 2553147 complement(2087241..2088119) 1 NC_002950.2 polyprenyl synthetase 2088119 2553147 PG1998 Porphyromonas gingivalis W83 polyprenyl synthetase NP_906070.1 2087241 R 242619 CDS NP_906071.1 34541592 2553141 complement(2088273..2088911) 1 NC_002950.2 similar to GB:U01032, and PID:393012; identified by sequence similarity; putative; hypothetical protein 2088911 2553141 PG1999 Porphyromonas gingivalis W83 hypothetical protein NP_906071.1 2088273 R 242619 CDS NP_906072.1 34541593 2553131 complement(2088932..2089558) 1 NC_002950.2 similar to GB:X02747, GB:M15656, GB:M15657, GB:K01177, GB:X00270, SP:P05062, PID:178353, PID:178357, PID:2160383, PID:28420, PID:28617, and PID:563884; identified by sequence similarity; putative; signal peptidase-like protein 2089558 2553131 PG2000 Porphyromonas gingivalis W83 signal peptidase-like protein NP_906072.1 2088932 R 242619 CDS NP_906073.1 34541594 2552102 complement(2089548..2090945) 1 NC_002950.2 similar to GB:X02747, GB:M15656, GB:M15657, GB:K01177, GB:X00270, SP:P05062, PID:178353, PID:178357, PID:2160383, PID:28420, PID:28617, and PID:563884; identified by sequence similarity; putative; signal peptidase I 2090945 lepB 2552102 lepB Porphyromonas gingivalis W83 signal peptidase I NP_906073.1 2089548 R 242619 CDS NP_906074.1 34541595 2552101 complement(2090961..2091677) 1 NC_002950.2 dihydrodipicolinate reductase 2091677 dapB 2552101 dapB Porphyromonas gingivalis W83 dihydrodipicolinate reductase NP_906074.1 2090961 R 242619 CDS NP_906075.1 34541596 2552100 complement(2091738..2093081) 1 NC_002950.2 similar to GB:X76942, GB:U41740, GB:X76942, PID:1213484, and PID:439656; identified by sequence similarity; putative; deoxyguanosinetriphosphate triphosphohydrolase 2093081 dgt 2552100 dgt Porphyromonas gingivalis W83 deoxyguanosinetriphosphate triphosphohydrolase NP_906075.1 2091738 R 242619 CDS NP_906076.1 34541597 2552099 complement(2093225..2094217) 1 NC_002950.2 similar to GB:M19267, GB:M19713, GB:M19714, GB:M19715, SP:P06753, SP:P07951, SP:P09493, SP:P09494, PID:339954, and PID:339956; identified by sequence similarity; putative; hypothetical protein 2094217 2552099 PG2004 Porphyromonas gingivalis W83 hypothetical protein NP_906076.1 2093225 R 242619 CDS NP_906077.1 34541598 2552098 2094727..2095086 1 NC_002950.2 hypothetical protein 2095086 2552098 PG2006 Porphyromonas gingivalis W83 hypothetical protein NP_906077.1 2094727 D 242619 CDS NP_906078.1 34541599 2552097 2095383..2097884 1 NC_002950.2 TonB-dependent receptor 2097884 2552097 PG2008 Porphyromonas gingivalis W83 TonB-dependent receptor NP_906078.1 2095383 D 242619 CDS NP_906079.1 34541600 2552096 2098454..2099191 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00613; DNA repair protein RecO 2099191 2552096 PG2009 Porphyromonas gingivalis W83 DNA repair protein RecO NP_906079.1 2098454 D 242619 CDS NP_906080.1 34541601 2552095 2099360..2101012 1 NC_002950.2 phosphomannomutase 2101012 2552095 PG2010 Porphyromonas gingivalis W83 phosphomannomutase NP_906080.1 2099360 D 242619 CDS NP_906081.1 34541602 2553112 complement(2104316..2104579) 1 NC_002950.2 similar to SP:Q04733; identified by sequence similarity; putative; CRISPR-associated Cas2 family protein 2104579 cas2-2 2553112 cas2-2 Porphyromonas gingivalis W83 CRISPR-associated Cas2 family protein NP_906081.1 2104316 R 242619 CDS NP_906082.1 34541603 2553099 complement(2104579..2105595) 1 NC_002950.2 similar to SP:P33962, PID:43662, PID:1154786, SP:P33962, PID:43662, and PID:1154786; identified by sequence similarity; putative; CRISPR-associated Cas1 family protein 2105595 cas1 2553099 cas1 Porphyromonas gingivalis W83 CRISPR-associated Cas1 family protein NP_906082.1 2104579 R 242619 CDS NP_906083.1 34541604 2553095 complement(2105592..2106104) 1 NC_002950.2 similar to GB:M63594, SP:P29236, PID:150688, GB:M63594, SP:P29236, and PID:150688; identified by sequence similarity; putative; CRISPR-associated Cas4 family protein 2106104 cas4 2553095 cas4 Porphyromonas gingivalis W83 CRISPR-associated Cas4 family protein NP_906083.1 2105592 R 242619 CDS NP_906084.1 34541605 2553085 complement(2106124..2108460) 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR01696; CRISPR-associated helicase Cas3 2108460 cas3 2553085 cas3 Porphyromonas gingivalis W83 CRISPR-associated helicase Cas3 NP_906084.1 2106124 R 242619 CDS NP_906085.1 34541606 2553081 complement(2108435..2109451) 1 NC_002950.2 hypothetical protein 2109451 2553081 PG2017 Porphyromonas gingivalis W83 hypothetical protein NP_906085.1 2108435 R 242619 CDS NP_906086.1 34541607 2553068 complement(2109462..2110961) 1 NC_002950.2 hypothetical protein 2110961 2553068 PG2018 Porphyromonas gingivalis W83 hypothetical protein NP_906086.1 2109462 R 242619 CDS NP_906087.1 34541608 2553058 complement(2110958..2111752) 1 NC_002950.2 identified by match to PFAM protein family HMM PF03787; hypothetical protein 2111752 2553058 PG2019 Porphyromonas gingivalis W83 hypothetical protein NP_906087.1 2110958 R 242619 CDS NP_906088.1 34541609 2553050 complement(2111698..2112363) 1 NC_002950.2 similar to GB:M63264, SP:P26900, PID:142517, PID:1303987, and GB:AL009126; identified by sequence similarity; putative; CRISPR-associated Cas5e family protein 2112363 2553050 PG2020 Porphyromonas gingivalis W83 CRISPR-associated Cas5e family protein NP_906088.1 2111698 R 242619 CDS NP_906089.1 34541610 2553023 complement(2113011..2114942) 1 NC_002950.2 hypothetical protein 2114942 2553023 PG2021 Porphyromonas gingivalis W83 hypothetical protein NP_906089.1 2113011 R 242619 CDS NP_906090.1 34541611 2553016 complement(2114946..2117489) 1 NC_002950.2 hypothetical protein 2117489 2553016 PG2022 Porphyromonas gingivalis W83 hypothetical protein NP_906090.1 2114946 R 242619 CDS NP_906091.1 34541612 2553010 complement(2117655..2118626) 1 NC_002950.2 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 2118626 fmt 2553010 fmt Porphyromonas gingivalis W83 methionyl-tRNA formyltransferase NP_906091.1 2117655 R 242619 CDS NP_906092.1 34541613 2552074 complement(2119173..2124293) 1 NC_002950.2 hemagglutinin protein HagE 2124293 hagE 2552074 hagE Porphyromonas gingivalis W83 hemagglutinin protein HagE NP_906092.1 2119173 R 242619 CDS NP_906093.1 34541614 2552073 2125072..2125605 1 NC_002950.2 phosphoglycerate mutase 2125605 2552073 PG2026 Porphyromonas gingivalis W83 phosphoglycerate mutase NP_906093.1 2125072 D 242619 CDS NP_906094.1 34541615 2552072 2125634..2126158 1 NC_002950.2 hypothetical protein 2126158 2552072 PG2027 Porphyromonas gingivalis W83 hypothetical protein NP_906094.1 2125634 D 242619 CDS NP_906095.1 34541616 2552071 2126167..2126676 1 NC_002950.2 ebsC protein 2126676 2552071 PG2028 Porphyromonas gingivalis W83 ebsC protein NP_906095.1 2126167 D 242619 CDS NP_906096.1 34541617 2552084 2126683..2129262 1 NC_002950.2 hypothetical protein 2129262 2552084 PG2029 Porphyromonas gingivalis W83 hypothetical protein NP_906096.1 2126683 D 242619 CDS NP_906097.1 34541618 2552077 2129887..2130468 1 NC_002950.2 hypothetical protein 2130468 2552077 PG2030 Porphyromonas gingivalis W83 hypothetical protein NP_906097.1 2129887 D 242619 CDS NP_906098.1 34541619 2553001 2130479..2130931 1 NC_002950.2 identified by match to PFAM protein family HMM PF05146; hypothetical protein 2130931 2553001 PG2031 Porphyromonas gingivalis W83 hypothetical protein NP_906098.1 2130479 D 242619 CDS NP_906099.1 34541620 2552994 complement(2130958..2133471) 1 NC_002950.2 similar to SP:P06519, PID:455334, and PID:1145786; identified by sequence similarity; putative; primosomal protein N' 2133471 priA 2552994 priA Porphyromonas gingivalis W83 primosomal protein N' NP_906099.1 2130958 R 242619 CDS NP_906100.1 34541621 2552989 complement(2133505..2134893) 1 NC_002950.2 similar to GB:L19221, and PID:410147; identified by sequence similarity; putative; glutamate synthase small subunit 2134893 gltD 2552989 gltD Porphyromonas gingivalis W83 glutamate synthase small subunit NP_906100.1 2133505 R 242619 CDS NP_906101.1 34541622 2552981 complement(2135000..2135791) 1 NC_002950.2 ferredoxin-NADP(+) reductase subunit alpha 2135791 2552981 PG2034 Porphyromonas gingivalis W83 ferredoxin-NADP(+) reductase subunit alpha NP_906101.1 2135000 R 242619 CDS NP_906102.1 34541623 2552971 2135992..2136669 1 NC_002950.2 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2136669 trmD 2552971 trmD Porphyromonas gingivalis W83 tRNA (guanine-N(1)-)-methyltransferase NP_906102.1 2135992 D 242619 CDS NP_906103.1 34541624 2552965 2136701..2137612 1 NC_002950.2 ion transporter 2137612 2552965 PG2036 Porphyromonas gingivalis W83 ion transporter NP_906103.1 2136701 D 242619 CDS NP_906104.1 34541625 2552956 complement(2137681..2137902) 1 NC_002950.2 hypothetical protein 2137902 2552956 PG2037 Porphyromonas gingivalis W83 hypothetical protein NP_906104.1 2137681 R 242619 CDS NP_906105.1 34541626 2552940 complement(2137899..2138297) 1 NC_002950.2 similar to GB:L10970, GB:L10970, PID:425436, GB:L10970, GB:L10970, PID:425436, SP:P28056, and PID:38963; identified by sequence similarity; putative; N-acetylmuramoyl-L-alanine amidase 2138297 2552940 PG2038 Porphyromonas gingivalis W83 N-acetylmuramoyl-L-alanine amidase NP_906105.1 2137899 R 242619 CDS NP_906106.1 34541627 2552931 complement(2138488..2138964) 1 NC_002950.2 histone-like family DNA-binding protein 2138964 2552931 PG2040 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_906106.1 2138488 R 242619 CDS NP_906107.1 34541628 2552928 complement(2139325..2140056) 1 NC_002950.2 hypothetical protein 2140056 2552928 PG2041 Porphyromonas gingivalis W83 hypothetical protein NP_906107.1 2139325 R 242619 CDS NP_906108.1 34541629 2552934 complement(2140189..2141199) 1 NC_002950.2 thioredoxin family protein 2141199 2552934 PG2042 Porphyromonas gingivalis W83 thioredoxin family protein NP_906108.1 2140189 R 242619 CDS NP_906109.1 34541630 2552043 2142358..2143452 1 NC_002950.2 hypothetical protein 2143452 2552043 PG2043 Porphyromonas gingivalis W83 hypothetical protein NP_906109.1 2142358 D 242619 CDS NP_906110.1 34541631 2552042 2143470..2144225 1 NC_002950.2 hypothetical protein 2144225 2552042 PG2044 Porphyromonas gingivalis W83 hypothetical protein NP_906110.1 2143470 D 242619 CDS NP_906111.1 34541632 2552041 2144489..2145853 1 NC_002950.2 hypothetical protein 2145853 2552041 PG2046 Porphyromonas gingivalis W83 hypothetical protein NP_906111.1 2144489 D 242619 CDS NP_906112.1 34541633 2552039 complement(2145848..2148133) 1 NC_002950.2 helicase 2148133 2552039 PG2047 Porphyromonas gingivalis W83 helicase NP_906112.1 2145848 R 242619 CDS NP_906113.1 34541634 2552038 complement(2148224..2148604) 1 NC_002950.2 hypothetical protein 2148604 2552038 PG2048 Porphyromonas gingivalis W83 hypothetical protein NP_906113.1 2148224 R 242619 CDS NP_906114.1 34541635 2552037 complement(2148617..2148994) 1 NC_002950.2 hypothetical protein 2148994 2552037 PG2049 Porphyromonas gingivalis W83 hypothetical protein NP_906114.1 2148617 R 242619 CDS NP_906115.1 34541636 2552036 complement(2149249..2149524) 1 NC_002950.2 hypothetical protein 2149524 2552036 PG2050 Porphyromonas gingivalis W83 hypothetical protein NP_906115.1 2149249 R 242619 CDS NP_906116.1 34541637 2552035 2149776..2150645 1 NC_002950.2 dihydrodipicolinate synthase 2150645 dapA 2552035 dapA Porphyromonas gingivalis W83 dihydrodipicolinate synthase NP_906116.1 2149776 D 242619 CDS NP_906117.1 34541638 2552034 2150674..2151327 1 NC_002950.2 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2151327 bioD 2552034 bioD Porphyromonas gingivalis W83 dithiobiotin synthetase NP_906117.1 2150674 D 242619 CDS NP_906118.1 34541639 2552033 complement(2151433..2152104) 1 NC_002950.2 lipoprotein PG3 2152104 2552033 PG2054 Porphyromonas gingivalis W83 lipoprotein PG3 NP_906118.1 2151433 R 242619 CDS NP_906119.1 34541640 2552032 complement(2152170..2153150) 1 NC_002950.2 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 2153150 2552032 PG2055 Porphyromonas gingivalis W83 dihydroorotate dehydrogenase 2 NP_906119.1 2152170 R 242619 CDS NP_906120.1 34541641 2552056 complement(2155099..2156037) 1 NC_002950.2 ISPg5, transposase Orf2 2156037 2552056 PG2057 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_906120.1 2155099 R 242619 CDS NP_906121.1 34541642 2552054 complement(2156091..2156480) 1 NC_002950.2 ISPg5, transposase Orf1 2156480 2552054 PG2058 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_906121.1 2156091 R 242619 CDS NP_906122.1 34541643 2552923 2157713..2158516 1 NC_002950.2 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2158516 thyA 2552923 thyA Porphyromonas gingivalis W83 thymidylate synthase NP_906122.1 2157713 D 242619 CDS NP_906123.1 34541644 2552908 2158562..2159050 1 NC_002950.2 similar to GB:X63753, GB:S47238, GB:S47239, GB:S47240, GB:S79056, SP:P18583, PID:338290, and PID:36546; identified by sequence similarity; putative; dihydrofolate reductase 2159050 folA 2552908 folA Porphyromonas gingivalis W83 dihydrofolate reductase NP_906123.1 2158562 D 242619 CDS NP_906124.1 34541645 2552902 2159111..2160475 1 NC_002950.2 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2160475 hisS 2552902 hisS Porphyromonas gingivalis W83 histidyl-tRNA synthetase NP_906124.1 2159111 D 242619 CDS NP_906125.1 34541646 2552893 complement(2160480..2160686) 1 NC_002950.2 hypothetical protein 2160686 2552893 PG2063 Porphyromonas gingivalis W83 hypothetical protein NP_906125.1 2160480 R 242619 CDS NP_906126.1 34541647 2552886 2160690..2161094 1 NC_002950.2 hypothetical protein 2161094 2552886 PG2064 Porphyromonas gingivalis W83 hypothetical protein NP_906126.1 2160690 D 242619 CDS NP_906127.1 34541648 2552858 2161140..2162165 1 NC_002950.2 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2162165 2552858 PG2065 Porphyromonas gingivalis W83 ribosomal RNA large subunit methyltransferase N NP_906127.1 2161140 D 242619 CDS NP_906128.1 34541649 2552836 2162256..2163311 1 NC_002950.2 putative lipoprotein 2163311 2552836 PG2066 Porphyromonas gingivalis W83 putative lipoprotein NP_906128.1 2162256 D 242619 CDS NP_906129.1 34541650 2552828 2163355..2164452 1 NC_002950.2 pyridoxal phosphate biosynthetic protein PdxA 2164452 pdxA 2552828 pdxA Porphyromonas gingivalis W83 pyridoxal phosphate biosynthetic protein PdxA NP_906129.1 2163355 D 242619 CDS NP_906130.1 34541651 2552800 2164474..2164932 1 NC_002950.2 similar to GB:X13543, and GB:X13541; identified by sequence similarity; putative; glycerol-3-phosphate cytidylyltransferase 2164932 tagD 2552800 tagD Porphyromonas gingivalis W83 glycerol-3-phosphate cytidylyltransferase NP_906130.1 2164474 D 242619 CDS NP_906131.1 34541652 2552798 2164938..2165669 1 NC_002950.2 short chain dehydrogenase/reductase oxidoreductase 2165669 2552798 PG2069 Porphyromonas gingivalis W83 short chain dehydrogenase/reductase oxidoreductase NP_906131.1 2164938 D 242619 CDS NP_906132.1 34541653 2552788 2165681..2166607 1 NC_002950.2 hypothetical protein 2166607 2552788 PG2070 Porphyromonas gingivalis W83 hypothetical protein NP_906132.1 2165681 D 242619 CDS NP_906133.1 34541654 2552778 2166577..2167512 1 NC_002950.2 hypothetical protein 2167512 2552778 PG2071 Porphyromonas gingivalis W83 hypothetical protein NP_906133.1 2166577 D 242619 CDS NP_906134.1 34541655 2552024 2167509..2170817 1 NC_002950.2 UvrD/REP helicase 2170817 2552024 PG2072 Porphyromonas gingivalis W83 UvrD/REP helicase NP_906134.1 2167509 D 242619 CDS NP_906135.1 34541656 2551503 complement(2174309..2174464) 1 NC_002950.2 hypothetical protein 2174464 2551503 PG2073 Porphyromonas gingivalis W83 hypothetical protein NP_906135.1 2174309 R 242619 CDS NP_906136.1 34541657 2551519 complement(2174593..2174751) 1 NC_002950.2 hypothetical protein 2174751 2551519 PG2074 Porphyromonas gingivalis W83 hypothetical protein NP_906136.1 2174593 R 242619 CDS NP_906137.1 34541658 2552706 complement(2176338..2176556) 1 NC_002950.2 hypothetical protein 2176556 2552706 PG2075 Porphyromonas gingivalis W83 hypothetical protein NP_906137.1 2176338 R 242619 CDS NP_906138.1 34541659 2552709 2176585..2177133 1 NC_002950.2 hypothetical protein 2177133 2552709 PG2076 Porphyromonas gingivalis W83 hypothetical protein NP_906138.1 2176585 D 242619 CDS NP_906139.1 34541660 2552670 complement(2177095..2177481) 1 NC_002950.2 hypothetical protein 2177481 2552670 PG2077 Porphyromonas gingivalis W83 hypothetical protein NP_906139.1 2177095 R 242619 CDS NP_906140.1 34541661 2552696 complement(2177518..2178690) 1 NC_002950.2 similar to GB:J01614, SP:P03024, GB:V00280, PID:146068, PID:41534, PID:882730, GB:U00096, and PID:1789202; identified by sequence similarity; putative; hypothetical protein 2178690 2552696 PG2078 Porphyromonas gingivalis W83 hypothetical protein NP_906140.1 2177518 R 242619 CDS NP_906141.1 34541662 2552716 complement(2178980..2179456) 1 NC_002950.2 hypothetical protein 2179456 2552716 PG2079 Porphyromonas gingivalis W83 hypothetical protein NP_906141.1 2178980 R 242619 CDS NP_906142.1 34541663 2552682 complement(2179468..2180769) 1 NC_002950.2 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2180769 bioA 2552682 bioA Porphyromonas gingivalis W83 adenosylmethionine-8-amino-7-oxononanoate aminotransferase NP_906142.1 2179468 R 242619 CDS NP_906143.1 34541664 2552727 complement(2180759..2181751) 1 NC_002950.2 biotin synthetase 2181751 bioB 2552727 bioB Porphyromonas gingivalis W83 biotin synthetase NP_906143.1 2180759 R 242619 CDS NP_906144.1 34541665 2552724 complement(2181933..2183474) 1 NC_002950.2 POT family protein 2183474 2552724 PG2082 Porphyromonas gingivalis W83 POT family protein NP_906144.1 2181933 R 242619 CDS NP_906145.1 34541666 2552651 complement(2183500..2184597) 1 NC_002950.2 hypothetical protein 2184597 2552651 PG2083 Porphyromonas gingivalis W83 hypothetical protein NP_906145.1 2183500 R 242619 CDS NP_906146.1 34541667 2552692 2185672..2186655 1 NC_002950.2 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2186655 trpS 2552692 trpS Porphyromonas gingivalis W83 tryptophanyl-tRNA synthetase NP_906146.1 2185672 D 242619 CDS NP_906147.1 34541668 2551526 2186711..2187130 1 NC_002950.2 hypothetical protein 2187130 2551526 PG2086 Porphyromonas gingivalis W83 hypothetical protein NP_906147.1 2186711 D 242619 CDS NP_906148.1 34541669 2551496 2187130..2187603 1 NC_002950.2 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2187603 2551496 PG2087 Porphyromonas gingivalis W83 rRNA large subunit methyltransferase NP_906148.1 2187130 D 242619 CDS NP_906149.1 34541670 2551523 2187665..2188723 1 NC_002950.2 this fusion consists of methionine sulfoxide A reductase at the N-terminus and B at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion; bifunctional methionine sulfoxide reductase A/B 2188723 msrA 2551523 msrA Porphyromonas gingivalis W83 bifunctional methionine sulfoxide reductase A/B NP_906149.1 2187665 D 242619 CDS NP_906150.1 34541671 2552633 2188780..2189964 1 NC_002950.2 hypothetical protein 2189964 2552633 PG2089 Porphyromonas gingivalis W83 hypothetical protein NP_906150.1 2188780 D 242619 CDS NP_906151.1 34541672 2552641 2190370..2191278 1 NC_002950.2 similar to SP:P38100, and PID:1750387; identified by sequence similarity; putative; cation efflux family protein 2191278 2552641 PG2090 Porphyromonas gingivalis W83 cation efflux family protein NP_906151.1 2190370 D 242619 CDS NP_906152.1 34541673 2552635 2191317..2191670 1 NC_002950.2 identified by match to TIGR protein family HMM TIGR00526; dihydroneopterin aldolase 2191670 folB 2552635 folB Porphyromonas gingivalis W83 dihydroneopterin aldolase NP_906152.1 2191317 D 242619 CDS NP_906153.1 34541674 2552646 complement(2191741..2193000) 1 NC_002950.2 hypothetical protein 2193000 2552646 PG2092 Porphyromonas gingivalis W83 hypothetical protein NP_906153.1 2191741 R 242619 CDS NP_906154.1 34541675 2552625 complement(2193411..2197958) 1 NC_002950.2 hypothetical protein 2197958 2552625 PG2094 Porphyromonas gingivalis W83 hypothetical protein NP_906154.1 2193411 R 242619 CDS NP_906155.1 34541676 2552617 complement(2198380..2200707) 1 NC_002950.2 putative lipoprotein 2200707 2552617 PG2095 Porphyromonas gingivalis W83 putative lipoprotein NP_906155.1 2198380 R 242619 CDS NP_906156.1 34541677 2551497 complement(2200715..2205505) 1 NC_002950.2 hypothetical protein 2205505 2551497 PG2096 Porphyromonas gingivalis W83 hypothetical protein NP_906156.1 2200715 R 242619 CDS NP_906157.1 34541678 2552615 complement(2205611..2206552) 1 NC_002950.2 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 2206552 prsA 2552615 prsA Porphyromonas gingivalis W83 ribose-phosphate pyrophosphokinase NP_906157.1 2205611 R 242619 CDS NP_906158.1 34541679 2552616 complement(2206549..2206725) 1 NC_002950.2 hypothetical protein 2206725 2552616 PG2098 Porphyromonas gingivalis W83 hypothetical protein NP_906158.1 2206549 R 242619 CDS NP_906159.1 34541680 2552601 complement(2206739..2208022) 1 NC_002950.2 DEAD/DEAH box helicase 2208022 2552601 PG2099 Porphyromonas gingivalis W83 DEAD/DEAH box helicase NP_906159.1 2206739 R 242619 CDS NP_906160.1 34541681 2552583 complement(2208617..2210281) 1 NC_002950.2 hypothetical protein 2210281 2552583 PG2100 Porphyromonas gingivalis W83 hypothetical protein NP_906160.1 2208617 R 242619 CDS NP_906161.1 34541682 2552558 complement(2210368..2211363) 1 NC_002950.2 hypothetical protein 2211363 2552558 PG2101 Porphyromonas gingivalis W83 hypothetical protein NP_906161.1 2210368 R 242619 CDS NP_906162.1 34541683 2552545 complement(2211514..2213136) 1 NC_002950.2 hypothetical protein 2213136 2552545 PG2102 Porphyromonas gingivalis W83 hypothetical protein NP_906162.1 2211514 R 242619 CDS NP_906163.1 34541684 2552540 complement(2213316..2213450) 1 NC_002950.2 hypothetical protein 2213450 2552540 PG2103 Porphyromonas gingivalis W83 hypothetical protein NP_906163.1 2213316 R 242619 CDS NP_906164.1 34541685 2551493 complement(2213575..2213709) 1 NC_002950.2 hypothetical protein 2213709 2551493 PG2104 Porphyromonas gingivalis W83 hypothetical protein NP_906164.1 2213575 R 242619 CDS NP_906165.1 34541686 2552502 2214139..2214639 1 NC_002950.2 putative lipoprotein 2214639 2552502 PG2105 Porphyromonas gingivalis W83 putative lipoprotein NP_906165.1 2214139 D 242619 CDS NP_906166.1 34541687 2552495 2214834..2215517 1 NC_002950.2 hypothetical protein 2215517 2552495 PG2106 Porphyromonas gingivalis W83 hypothetical protein NP_906166.1 2214834 D 242619 CDS NP_906167.1 34541688 2551801 complement(2215636..2216748) 1 NC_002950.2 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH 2216748 thiH 2551801 thiH Porphyromonas gingivalis W83 thiamine biosynthesis protein ThiH NP_906167.1 2215636 R 242619 CDS NP_906168.1 34541689 2552496 complement(2216761..2217540) 1 NC_002950.2 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2217540 thiG 2552496 thiG Porphyromonas gingivalis W83 thiazole synthase NP_906168.1 2216761 R 242619 CDS NP_906169.1 34541690 2551490 complement(2217599..2219542) 1 NC_002950.2 thiamine-phosphate pyrophosphorylase 2219542 thiE 2551490 thiE Porphyromonas gingivalis W83 thiamine-phosphate pyrophosphorylase NP_906169.1 2217599 R 242619 CDS NP_906170.1 34541691 2551489 complement(2219539..2221302) 1 NC_002950.2 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2221302 thiC 2551489 thiC Porphyromonas gingivalis W83 thiamine biosynthesis protein ThiC NP_906170.1 2219539 R 242619 CDS NP_906171.1 34541692 2552473 complement(2221372..2221572) 1 NC_002950.2 similar to GB:Z36940, PID:535808, GB:Z36940, and PID:535808; identified by sequence similarity; putative; sulfur carrier protein ThiS 2221572 thiS 2552473 thiS Porphyromonas gingivalis W83 sulfur carrier protein ThiS NP_906171.1 2221372 R 242619 CDS NP_906172.1 34541693 2552445 2221611..2222723 1 NC_002950.2 hypothetical protein 2222723 2552445 PG2112 Porphyromonas gingivalis W83 hypothetical protein NP_906172.1 2221611 D 242619 CDS NP_906173.1 34541694 2552467 complement(2224072..2224248) 1 NC_002950.2 hypothetical protein 2224248 2552467 PG2114 Porphyromonas gingivalis W83 hypothetical protein NP_906173.1 2224072 R 242619 CDS NP_906174.1 34541695 2552477 2224775..2224927 1 NC_002950.2 hypothetical protein 2224927 2552477 PG2116 Porphyromonas gingivalis W83 hypothetical protein NP_906174.1 2224775 D 242619 CDS NP_906175.1 34541696 2552452 complement(2225325..2225903) 1 NC_002950.2 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2225903 rpsP 2552452 rpsP Porphyromonas gingivalis W83 30S ribosomal protein S16 NP_906175.1 2225325 R 242619 CDS NP_906176.1 34541697 2552412 2226687..2227658 1 NC_002950.2 identified by match to PFAM protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 2227658 2552412 PG2119 Porphyromonas gingivalis W83 Gfo/Idh/MocA family oxidoreductase NP_906176.1 2226687 D 242619 CDS NP_906177.1 34541698 2552439 complement(2227773..2228582) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00753; metallo-beta-lactamase superfamily protein 2228582 2552439 PG2120 Porphyromonas gingivalis W83 metallo-beta-lactamase superfamily protein NP_906177.1 2227773 R 242619 CDS NP_906178.1 34541699 2552408 complement(2228635..2229714) 1 NC_002950.2 L-asparaginase 2229714 ansA 2552408 ansA Porphyromonas gingivalis W83 L-asparaginase NP_906178.1 2228635 R 242619 CDS NP_906179.1 34541700 2552458 2230031..2230303 1 NC_002950.2 hypothetical protein 2230303 2552458 PG2123 Porphyromonas gingivalis W83 hypothetical protein NP_906179.1 2230031 D 242619 CDS NP_906180.1 34541701 2552418 2230314..2231324 1 NC_002950.2 glyceraldehyde 3-phosphate dehydrogenase, type I 2231324 gapA 2552418 gapA Porphyromonas gingivalis W83 glyceraldehyde 3-phosphate dehydrogenase, type I NP_906180.1 2230314 D 242619 CDS NP_906181.1 34541702 2552434 complement(2231466..2232344) 1 NC_002950.2 AraC family transcriptional regulator 2232344 2552434 PG2125 Porphyromonas gingivalis W83 AraC family transcriptional regulator NP_906181.1 2231466 R 242619 CDS NP_906182.1 34541703 2552416 complement(2232528..2233202) 1 NC_002950.2 similar to GB:D13816, SP:Q08637, PID:391682, PID:487279, GB:D13816, SP:Q08637, PID:391682, and PID:487279; identified by sequence similarity; putative; hypothetical protein 2233202 2552416 PG2126 Porphyromonas gingivalis W83 hypothetical protein NP_906182.1 2232528 R 242619 CDS NP_906183.1 34541704 2551437 complement(2233199..2233642) 1 NC_002950.2 hypothetical protein 2233642 2551437 PG2127 Porphyromonas gingivalis W83 hypothetical protein NP_906183.1 2233199 R 242619 CDS NP_906184.1 34541705 2551439 complement(2233957..2234895) 1 NC_002950.2 identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 2234895 2551439 PG2128 Porphyromonas gingivalis W83 ISPg5, transposase Orf2 NP_906184.1 2233957 R 242619 CDS NP_906185.1 34541706 2551400 complement(2234949..2235338) 1 NC_002950.2 ISPg5, transposase Orf1 2235338 2551400 PG2129 Porphyromonas gingivalis W83 ISPg5, transposase Orf1 NP_906185.1 2234949 R 242619 CDS NP_906186.1 34541707 2551500 2235707..2236288 1 NC_002950.2 hypothetical protein 2236288 2551500 PG2130 Porphyromonas gingivalis W83 hypothetical protein NP_906186.1 2235707 D 242619 CDS NP_906187.1 34541708 2551376 2236314..2237786 1 NC_002950.2 hypothetical protein 2237786 2551376 PG2131 Porphyromonas gingivalis W83 hypothetical protein NP_906187.1 2236314 D 242619 CDS NP_906188.1 34541709 2551422 2237837..2239003 1 NC_002950.2 similar to GB:M15518, GB:D01096, GB:A01465, GB:A04051, GB:A07197, GB:V00570, GB:K03021, GB:L00153, GB:L00141, GB:L00142, GB:L00143, GB:L00144, GB:L00145, GB:L00146, GB:L00147, GB:L00148, GB:L00149, GB:L00150, GB:L00151, GB:L00152, GB:S77144, SP:P00750, PID:190032, PID:2285954, PID:339818, PID:339834, PID:339839, PID:340177, PID:345129, PID:37244, PID:412165, PID:441174, and PID:575655; identified by sequence similarity; putative; fimbrilin 2239003 fimA 2551422 fimA Porphyromonas gingivalis W83 fimbrilin NP_906188.1 2237837 D 242619 CDS NP_906189.1 34541710 2551391 2239142..2240053 1 NC_002950.2 putative lipoprotein 2240053 2551391 PG2133 Porphyromonas gingivalis W83 putative lipoprotein NP_906189.1 2239142 D 242619 CDS NP_906190.1 34541711 2551367 2240067..2241440 1 NC_002950.2 similar to GB:M64978, and PID:150553; identified by sequence similarity; putative; putative lipoprotein 2241440 2551367 PG2134 Porphyromonas gingivalis W83 putative lipoprotein NP_906190.1 2240067 D 242619 CDS NP_906191.1 34541712 2551524 2241461..2243473 1 NC_002950.2 similar to GB:X75411, SP:P39466, and PID:415999; identified by sequence similarity; putative; putative lipoprotein 2243473 2551524 PG2135 Porphyromonas gingivalis W83 putative lipoprotein NP_906191.1 2241461 D 242619 CDS NP_906192.1 34541713 2551405 2243500..2245164 1 NC_002950.2 hypothetical protein 2245164 2551405 PG2136 Porphyromonas gingivalis W83 hypothetical protein NP_906192.1 2243500 D 242619 CDS NP_906193.1 34541714 2551428 2245788..2246267 1 NC_002950.2 hypothetical protein 2246267 2551428 PG2139 Porphyromonas gingivalis W83 hypothetical protein NP_906193.1 2245788 D 242619 CDS NP_906194.1 34541715 2551444 2246274..2246459 1 NC_002950.2 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2246459 rpmF 2551444 rpmF Porphyromonas gingivalis W83 50S ribosomal protein L32 NP_906194.1 2246274 D 242619 CDS NP_906195.1 34541716 2551458 2246639..2247646 1 NC_002950.2 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2247646 fabH 2551458 fabH Porphyromonas gingivalis W83 3-oxoacyl-ACP synthase NP_906195.1 2246639 D 242619 CDS NP_906196.1 34541717 2552378 2247725..2248624 1 NC_002950.2 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2248624 era 2552378 era Porphyromonas gingivalis W83 GTP-binding protein Era NP_906196.1 2247725 D 242619 CDS NP_906197.1 34541718 2552372 2248687..2250000 1 NC_002950.2 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2250000 engA 2552372 engA Porphyromonas gingivalis W83 GTP-binding protein EngA NP_906197.1 2248687 D 242619 CDS NP_906198.1 34541719 2552369 2250051..2253350 1 NC_002950.2 hypothetical protein 2253350 2552369 PG2144 Porphyromonas gingivalis W83 hypothetical protein NP_906198.1 2250051 D 242619 CDS NP_906199.1 34541720 2552367 2253393..2253998 1 NC_002950.2 identified by match to PFAM protein family HMM PF01522; polysaccharide deacetylase 2253998 2552367 PG2145 Porphyromonas gingivalis W83 polysaccharide deacetylase NP_906199.1 2253393 D 242619 CDS NP_906200.1 34541721 2552330 2253955..2254710 1 NC_002950.2 similar to GB:D10668, SP:P29537, PID:216714, GB:D10668, SP:P29537, and PID:216714; identified by sequence similarity; putative; hypothetical protein 2254710 2552330 PG2146 Porphyromonas gingivalis W83 hypothetical protein NP_906200.1 2253955 D 242619 CDS NP_906201.1 34541722 2552382 complement(2254909..2255490) 1 NC_002950.2 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 2255490 xpt 2552382 xpt Porphyromonas gingivalis W83 xanthine phosphoribosyltransferase NP_906201.1 2254909 R 242619 CDS NP_906202.1 34541723 2552380 complement(2255527..2256864) 1 NC_002950.2 xanthine/uracil permease 2256864 2552380 PG2148 Porphyromonas gingivalis W83 xanthine/uracil permease NP_906202.1 2255527 R 242619 CDS NP_906203.1 34541724 2552340 complement(2257026..2257748) 1 NC_002950.2 hypothetical protein 2257748 2552340 PG2149 Porphyromonas gingivalis W83 hypothetical protein NP_906203.1 2257026 R 242619 CDS NP_906204.1 34541725 2552334 complement(2257757..2259262) 1 NC_002950.2 LysM domain-containing protein 2259262 2552334 PG2150 Porphyromonas gingivalis W83 LysM domain-containing protein NP_906204.1 2257757 R 242619 CDS NP_906205.1 34541726 2552357 2259890..2260375 1 NC_002950.2 histone-like family DNA-binding protein 2260375 2552357 PG2152 Porphyromonas gingivalis W83 histone-like family DNA-binding protein NP_906205.1 2259890 D 242619 CDS NP_906206.1 34541727 2552388 complement(2260850..2261035) 1 NC_002950.2 hypothetical protein 2261035 2552388 PG2154 Porphyromonas gingivalis W83 hypothetical protein NP_906206.1 2260850 R 242619 CDS NP_906207.1 34541728 2551466 complement(2261062..2261952) 1 NC_002950.2 putative lipoprotein 2261952 2551466 PG2155 Porphyromonas gingivalis W83 putative lipoprotein NP_906207.1 2261062 R 242619 CDS NP_906208.1 34541729 2551467 complement(2261989..2262735) 1 NC_002950.2 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2262735 2551467 PG2156 Porphyromonas gingivalis W83 16S ribosomal RNA methyltransferase RsmE NP_906208.1 2261989 R 242619 CDS NP_906209.1 34541730 2551468 2263083..2264084 1 NC_002950.2 similar to GB:M61877, GB:M11049, GB:M61775, GB:M13233, SP:P02549, PID:182243, PID:338438, PID:460309, and PID:553648; identified by sequence similarity; putative; glutamine cyclotransferase-like protein 2264084 2551468 PG2157 Porphyromonas gingivalis W83 glutamine cyclotransferase-like protein NP_906209.1 2263083 D 242619 CDS NP_906210.1 34541731 2551470 2264108..2264533 1 NC_002950.2 identified by match to PFAM protein family HMM PF02657; hypothetical protein 2264533 2551470 PG2158 Porphyromonas gingivalis W83 hypothetical protein NP_906210.1 2264108 D 242619 CDS NP_906211.1 34541732 2551471 2264537..2265934 1 NC_002950.2 protoporphyrinogen oxidase 2265934 2551471 PG2159 Porphyromonas gingivalis W83 protoporphyrinogen oxidase NP_906211.1 2264537 D 242619 CDS NP_906212.1 34541733 2551472 complement(2266807..2267706) 1 NC_002950.2 AraC family transcriptional regulator 2267706 2551472 PG2161 Porphyromonas gingivalis W83 AraC family transcriptional regulator NP_906212.1 2266807 R 242619 CDS NP_906213.1 34541734 2551474 complement(2267703..2268854) 1 NC_002950.2 lipid A disaccharide synthase 2268854 lpxB 2551474 lpxB Porphyromonas gingivalis W83 lipid A disaccharide synthase NP_906213.1 2267703 R 242619 CDS NP_906214.1 34541735 2551435 complement(2268891..2269661) 1 NC_002950.2 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 2269661 surE 2551435 surE Porphyromonas gingivalis W83 stationary phase survival protein SurE NP_906214.1 2268891 R 242619 CDS NP_906215.1 34541736 2551431 complement(2269658..2270215) 1 NC_002950.2 FKBP-type peptidylprolyl isomerase 2270215 2551431 PG2164 Porphyromonas gingivalis W83 FKBP-type peptidylprolyl isomerase NP_906215.1 2269658 R 242619 CDS NP_906216.1 34541737 2551429 complement(2270212..2271759) 1 NC_002950.2 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 2271759 glyS 2551429 glyS Porphyromonas gingivalis W83 glycyl-tRNA synthetase NP_906216.1 2270212 R 242619 CDS NP_906217.1 34541738 2551384 2271949..2272059 1 NC_002950.2 hypothetical protein 2272059 2551384 PG2166 Porphyromonas gingivalis W83 hypothetical protein NP_906217.1 2271949 D 242619 CDS NP_906218.1 34541739 2551388 complement(2272194..2273633) 1 NC_002950.2 hypothetical protein 2273633 2551388 PG2167 Porphyromonas gingivalis W83 hypothetical protein NP_906218.1 2272194 R 242619 CDS NP_906219.1 34541740 2551375 complement(2273678..2274247) 1 NC_002950.2 hypothetical protein 2274247 2551375 PG2168 Porphyromonas gingivalis W83 hypothetical protein NP_906219.1 2273678 R 242619 CDS NP_906220.1 34541741 2551379 complement(2276775..2278064) 1 NC_002950.2 similar to GB:S68805, SP:P50440, and PID:791049; identified by sequence similarity; putative; sugar transporter 2278064 2551379 PG2170 Porphyromonas gingivalis W83 sugar transporter NP_906220.1 2276775 R 242619 CDS NP_906221.1 34541742 2552323 complement(2278103..2279062) 1 NC_002950.2 D-isomer specific 2-hydroxyacid dehydrogenase 2279062 2552323 PG2171 Porphyromonas gingivalis W83 D-isomer specific 2-hydroxyacid dehydrogenase NP_906221.1 2278103 R 242619 CDS NP_906222.1 34541743 2552266 complement(2279281..2280027) 1 NC_002950.2 hypothetical protein 2280027 2552266 PG2172 Porphyromonas gingivalis W83 hypothetical protein NP_906222.1 2279281 R 242619 CDS NP_906223.1 34541744 2552232 complement(2280031..2280903) 1 NC_002950.2 outer membrane lipoprotein Omp28 2280903 omp28 2552232 omp28 Porphyromonas gingivalis W83 outer membrane lipoprotein Omp28 NP_906223.1 2280031 R 242619 CDS NP_906224.1 34541745 2552239 complement(2280923..2282668) 1 NC_002950.2 hypothetical protein 2282668 2552239 PG2174 Porphyromonas gingivalis W83 hypothetical protein NP_906224.1 2280923 R 242619 CDS NP_906225.1 34541746 2552282 complement(2282724..2283206) 1 NC_002950.2 hypothetical protein 2283206 2552282 PG2175 Porphyromonas gingivalis W83 hypothetical protein NP_906225.1 2282724 R 242619 CDS NP_906226.1 34541747 2552306 complement(2283305..2284435) 1 NC_002950.2 similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase 2284435 2552306 PG2176 Porphyromonas gingivalis W83 ISPg2, transposase NP_906226.1 2283305 R 242619 CDS NP_906227.1 34541748 2552262 complement(2285356..2286594) 1 NC_002950.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 2286594 nqrF 2552262 nqrF Porphyromonas gingivalis W83 Na(+)-translocating NADH-quinone reductase subunit F NP_906227.1 2285356 R 242619 CDS NP_906228.1 34541749 2552251 complement(2286613..2287227) 1 NC_002950.2 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 2287227 nqrE 2552251 nqrE Porphyromonas gingivalis W83 Na(+)-translocating NADH-quinone reductase subunit E NP_906228.1 2286613 R 242619 CDS NP_906229.1 34541750 2552245 complement(2287267..2287896) 1 NC_002950.2 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 2287896 nqrD 2552245 nqrD Porphyromonas gingivalis W83 Na(+)-translocating NADH-quinone reductase subunit D NP_906229.1 2287267 R 242619 CDS NP_906230.1 34541751 2551394 complement(2287902..2288636) 1 NC_002950.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 2288636 nqrC 2551394 nqrC Porphyromonas gingivalis W83 Na(+)-translocating NADH-quinone reductase subunit C NP_906230.1 2287902 R 242619 CDS NP_906231.1 34541752 2551378 complement(2288660..2289859) 1 NC_002950.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 2289859 nqrB 2551378 nqrB Porphyromonas gingivalis W83 Na(+)-translocating NADH-quinone reductase subunit B NP_906231.1 2288660 R 242619 CDS NP_906232.1 34541753 2551385 complement(2289890..2291245) 1 NC_002950.2 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 2291245 nqrA 2551385 nqrA Porphyromonas gingivalis W83 Na(+)-translocating NADH-quinone reductase subunit A NP_906232.1 2289890 R 242619 CDS NP_906233.1 34541754 2551390 complement(2292023..2293339) 1 NC_002950.2 similar to GB:D13633, and PID:286013; identified by sequence similarity; putative; transporter 2293339 2551390 PG2185 Porphyromonas gingivalis W83 transporter NP_906233.1 2292023 R 242619 CDS NP_906234.1 34541755 2551414 complement(2293374..2293709) 1 NC_002950.2 identified by match to PFAM protein family HMM PF03965; transcriptional regulator 2293709 2551414 PG2186 Porphyromonas gingivalis W83 transcriptional regulator NP_906234.1 2293374 R 242619 CDS NP_906235.1 34541756 2552023 complement(2293846..2294733) 1 NC_002950.2 similar to GB:M57417, and PID:188878; identified by sequence similarity; putative; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2294733 menA 2552023 menA Porphyromonas gingivalis W83 1,4-dihydroxy-2-naphthoate octaprenyltransferase NP_906235.1 2293846 R 242619 CDS NP_906236.1 34541757 2551374 complement(2294723..2295871) 1 NC_002950.2 similar to GB:X14448, GB:L35265, GB:M13571, GB:X16889, SP:P06280, PID:1684916, PID:178246, PID:31756, PID:553299, and PID:757912; identified by sequence similarity; putative; diaminopimelate decarboxylase 2295871 lysA 2551374 lysA Porphyromonas gingivalis W83 diaminopimelate decarboxylase NP_906236.1 2294723 R 242619 CDS NP_906237.1 34541758 2551423 complement(2295901..2297241) 1 NC_002950.2 similar to GB:L13923, GB:X63556, GB:L19896, SP:P35555, PID:1335064, and PID:306746; identified by sequence similarity; putative; aspartate kinase 2297241 lysC 2551423 lysC Porphyromonas gingivalis W83 aspartate kinase NP_906237.1 2295901 R 242619 CDS NP_906238.1 34541759 2552017 complement(2297259..2297999) 1 NC_002950.2 cell-division ATP-binding protein 2297999 ftsE 2552017 ftsE Porphyromonas gingivalis W83 cell-division ATP-binding protein NP_906238.1 2297259 R 242619 CDS NP_906239.1 34541760 2551408 2298381..2299394 1 NC_002950.2 M24/M37 family peptidase 2299394 2551408 PG2192 Porphyromonas gingivalis W83 M24/M37 family peptidase NP_906239.1 2298381 D 242619 CDS NP_906240.1 34541761 2551959 complement(2301052..2302209) 1 NC_002950.2 ISPg4, transposase 2302209 2551959 PG2194 Porphyromonas gingivalis W83 ISPg4, transposase NP_906240.1 2301052 R 242619 CDS NP_906241.1 34541762 2551889 2302745..2303542 1 NC_002950.2 hypothetical protein 2303542 2551889 PG2197 Porphyromonas gingivalis W83 hypothetical protein NP_906241.1 2302745 D 242619 CDS NP_906242.1 34541763 2551857 complement(2304876..2306813) 1 NC_002950.2 similar to GB:M33782, SP:P19484, PID:553790, and SP:P05974; identified by sequence similarity; putative; ABC transporter ATP-binding protein 2306813 2551857 PG2199 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_906242.1 2304876 R 242619 CDS NP_906243.1 34541764 2551859 complement(2306810..2308897) 1 NC_002950.2 similar to SP:P27029, GB:X57299, and PID:47906; identified by sequence similarity; putative; hypothetical protein 2308897 2551859 PG2200 Porphyromonas gingivalis W83 hypothetical protein NP_906243.1 2306810 R 242619 CDS NP_906244.1 34541765 2551853 complement(2308933..2309502) 1 NC_002950.2 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2309502 def 2551853 def Porphyromonas gingivalis W83 peptide deformylase NP_906244.1 2308933 R 242619 CDS NP_906245.1 34541766 2551852 complement(2309607..2310023) 1 NC_002950.2 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2310023 2551852 PG2202 Porphyromonas gingivalis W83 Holliday junction resolvase-like protein NP_906245.1 2309607 R 242619 CDS NP_906246.1 34541767 2551841 2310521..2316247 1 NC_002950.2 hypothetical protein 2316247 2551841 PG2204 Porphyromonas gingivalis W83 hypothetical protein NP_906246.1 2310521 D 242619 CDS NP_906247.1 34541768 2551861 2316261..2317205 1 NC_002950.2 2-dehydropantoate 2-reductase 2317205 panE 2551861 panE Porphyromonas gingivalis W83 2-dehydropantoate 2-reductase NP_906247.1 2316261 D 242619 CDS NP_906248.1 34541769 2551810 complement(2317340..2318956) 1 NC_002950.2 similar to SP:P33159, GB:X68014, and PID:40807; identified by sequence similarity; putative; ABC transporter ATP-binding protein 2318956 2551810 PG2206 Porphyromonas gingivalis W83 ABC transporter ATP-binding protein NP_906248.1 2317340 R 242619 CDS NP_906249.1 34541770 2551806 complement(2319232..2320251) 1 NC_002950.2 hypothetical protein 2320251 2551806 PG2207 Porphyromonas gingivalis W83 hypothetical protein NP_906249.1 2319232 R 242619 CDS NP_906250.1 34541771 2551843 complement(2320422..2320676) 1 NC_002950.2 hypothetical protein 2320676 2551843 PG2208 Porphyromonas gingivalis W83 hypothetical protein NP_906250.1 2320422 R 242619 CDS NP_906251.1 34541772 2551773 complement(2320764..2321018) 1 NC_002950.2 similar to GB:M31917, SP:P26879, PID:149688, GB:M31917, SP:P26879, and PID:149688; identified by sequence similarity; putative; hypothetical protein 2321018 2551773 PG2209 Porphyromonas gingivalis W83 hypothetical protein NP_906251.1 2320764 R 242619 CDS NP_906252.1 34541773 2551770 complement(2321042..2323900) 1 NC_002950.2 similar to GB:X52520, GB:X52509, SP:P17735, PID:1217965, PID:36713, and PID:37502; identified by sequence similarity; putative; excinuclease ABC subunit A 2323900 uvrA-2 2551770 uvrA-2 Porphyromonas gingivalis W83 excinuclease ABC subunit A NP_906252.1 2321042 R 242619 CDS NP_906253.1 34541774 2551685 complement(2324573..2324857) 1 NC_002950.2 hypothetical protein 2324857 2551685 PG2212 Porphyromonas gingivalis W83 hypothetical protein NP_906253.1 2324573 R 242619 CDS NP_906254.1 34541775 2551679 complement(2324938..2325120) 1 NC_002950.2 similar to GB:M19480, GB:M19481, SP:P19883, and PID:182721; identified by sequence similarity; putative; nitrite reductase-like protein 2325120 2551679 PG2213 Porphyromonas gingivalis W83 nitrite reductase-like protein NP_906254.1 2324938 R 242619 CDS NP_906255.1 34541776 2551726 complement(2325391..2326665) 1 NC_002950.2 hypothetical protein 2326665 2551726 PG2214 Porphyromonas gingivalis W83 hypothetical protein NP_906255.1 2325391 R 242619 CDS NP_906256.1 34541777 2551659 complement(2326700..2327785) 1 NC_002950.2 similar to GB:D26185, SP:P37464, PID:467403, and GB:AL009126; identified by sequence similarity; putative; mannose-1-phosphate guanylyltransferase 2327785 manC 2551659 manC Porphyromonas gingivalis W83 mannose-1-phosphate guanylyltransferase NP_906256.1 2326700 R 242619 CDS NP_906257.1 34541778 2551647 2327860..2329590 1 NC_002950.2 hypothetical protein 2329590 2551647 PG2216 Porphyromonas gingivalis W83 hypothetical protein NP_906257.1 2327860 D 242619 CDS NP_906258.1 34541779 2551684 2329763..2331667 1 NC_002950.2 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2331667 dxs 2551684 dxs Porphyromonas gingivalis W83 1-deoxy-D-xylulose-5-phosphate synthase NP_906258.1 2329763 D 242619 CDS NP_906259.1 34541780 2551621 2331720..2333060 1 NC_002950.2 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 2333060 trkA 2551621 trkA Porphyromonas gingivalis W83 potassium transporter peripheral membrane protein NP_906259.1 2331720 D 242619 CDS NP_906260.1 34541781 2551676 2333087..2334550 1 NC_002950.2 potassium uptake protein TrkH 2334550 trkH 2551676 trkH Porphyromonas gingivalis W83 potassium uptake protein TrkH NP_906260.1 2333087 D 242619 CDS NP_906261.1 34541782 2551643 2335075..2335428 1 NC_002950.2 hypothetical protein 2335428 2551643 PG2220 Porphyromonas gingivalis W83 hypothetical protein NP_906261.1 2335075 D 242619 CDS NP_906262.1 34541783 2551590 2335566..2336900 1 NC_002950.2 MiaB-like tRNA modifying enzyme 2336900 2551590 PG2221 Porphyromonas gingivalis W83 MiaB-like tRNA modifying enzyme NP_906262.1 2335566 D 242619 CDS NP_906263.1 34541784 2551562 2336897..2337814 1 NC_002950.2 acyltransferase 2337814 2551562 PG2222 Porphyromonas gingivalis W83 acyltransferase NP_906263.1 2336897 D 242619 CDS NP_906264.1 34541785 2551610 2337853..2338821 1 NC_002950.2 similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; glycosyl transferase group 2 family protein 2338821 2551610 PG2223 Porphyromonas gingivalis W83 glycosyl transferase group 2 family protein NP_906264.1 2337853 D 242619 CDS NP_906265.1 34541786 2551577 2339003..2339560 1 NC_002950.2 similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; hypothetical protein 2339560 2551577 PG2224 Porphyromonas gingivalis W83 hypothetical protein NP_906265.1 2339003 D 242619 CDS NP_906266.1 34541787 2551586 2339580..2339849 1 NC_002950.2 similar to GB:L23283, SP:P01764, SP:P01767, PID:483870, PID:495944, PID:495993, PID:496012, PID:496014, PID:505431, PID:507337, PID:509800, PID:511000, PID:520409, PID:520410, PID:547525, PID:547528, PID:547545, PID:553379, PID:553406, PID:553408, PID:553412, PID:553422, PID:553434, PID:553435, PID:553436, PID:553437, PID:553438, PID:553439, PID:553443, PID:553445, PID:553446, PID:553453, PID:553455, PID:553472, PID:563648, PID:567114, PID:567121, PID:567123, PID:567127, PID:567169, PID:567173, PID:567177, PID:587261, PID:587265, PID:587269, PID:587271, PID:587275, PID:587294, PID:587296, PID:587302, PID:587305, PID:587307, PID:587318, PID:619425, PID:619625, PID:619627, PID:619629, PID:619630, PID:619779, PID:642584, PID:773612, PID:773618, PID:773638, PID:790801, PID:790805, PID:790809, PID:806834, PID:860973, PID:860977, PID:896272, PID:896273, PID:901824, PID:901825, PID:903667, PID:903675, PID:905375, PID:905377, PID:939890, PID:939891, PID:939894, PID:940526, PID:945217, PID:976299, PID:976304, PID:976; hypothetical protein 2339849 2551586 PG2225 Porphyromonas gingivalis W83 hypothetical protein NP_906266.1 2339580 D 242619 CDS NP_906267.1 34541788 2551552 2339929..2342151 1 NC_002950.2 similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; hypothetical protein 2342151 2551552 PG2226 Porphyromonas gingivalis W83 hypothetical protein NP_906267.1 2339929 D 242619 CDS NP_906268.1 34541789 2551557 2342148..2342804 1 NC_002950.2 hypothetical protein 2342804 2551557 PG2227 Porphyromonas gingivalis W83 hypothetical protein NP_906268.1 2342148 D 242619 CDS