-- dump date 20140619_235326 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 242619000001 SEQ_END SEQ_END NC_002950.2 2343476 2343476 DR NC_002950.2; contig end 2343476..2343476 Porphyromonas gingivalis W83 NP_904360.1 CDS dnaA NC_002950.2 1 1422 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1422 Porphyromonas gingivalis W83 2551501 NP_904361.1 CDS PG0002 NC_002950.2 1435 2007 D similar to GB:U03884, GB:U12541, GB:U12542, GB:U12544, GB:U12545, GB:S78737, GB:U12543, SP:P48048, PID:1698659, PID:1698660, PID:1698661, PID:1698662, PID:1698663, PID:1698664, PID:433143, PID:529313, PID:529315, PID:529317, PID:639911, and PID:639912; identified by sequence similarity; putative; hexapeptide transferase 1435..2007 Porphyromonas gingivalis W83 2551923 NP_904362.1 CDS PG0003 NC_002950.2 2009 3028 R similar to GB:L22208, GB:Z24754, PID:415596, and PID:415918; identified by sequence similarity; putative; hypothetical protein complement(2009..3028) Porphyromonas gingivalis W83 2551834 NP_904363.1 CDS PG0004 NC_002950.2 3108 3812 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 3108..3812 Porphyromonas gingivalis W83 2552205 NP_904364.1 CDS PG0005 NC_002950.2 3887 5041 R hypothetical protein complement(3887..5041) Porphyromonas gingivalis W83 2551831 NP_904365.1 CDS PG0006 NC_002950.2 5094 6422 R identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein complement(5094..6422) Porphyromonas gingivalis W83 2552738 NP_904366.1 CDS PG0007 NC_002950.2 6845 7003 R hypothetical protein complement(6845..7003) Porphyromonas gingivalis W83 2551790 NP_904367.1 CDS PG0008 NC_002950.2 7175 8113 R identified by match to PFAM protein family HMM PF00665; ISPg5 transposase Orf2 complement(7175..8113) Porphyromonas gingivalis W83 2552719 NP_904368.1 CDS PG0009 NC_002950.2 8167 8556 R ISPg5 transposase Orf1 complement(8167..8556) Porphyromonas gingivalis W83 2551768 NP_904369.1 CDS clpC NC_002950.2 8915 11494 D similar to GB:J05272, SP:P20839, PID:307067, GB:J05272, SP:P20839, and PID:307067; identified by sequence similarity; putative; ATP-dependent Clp protease, ATP-binding subunit ClpC 8915..11494 Porphyromonas gingivalis W83 2551760 NP_904370.1 CDS PG0011 NC_002950.2 11634 14645 D glycosyl hydrolase 11634..14645 Porphyromonas gingivalis W83 2551515 NP_904371.1 CDS PG0012 NC_002950.2 14693 15721 D similar to GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, PID:1786365, GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, and PID:1786365; identified by sequence similarity; putative; L-threonine-O-3-phosphate decarboxylase 14693..15721 Porphyromonas gingivalis W83 2551828 NP_904372.1 CDS PG0013 NC_002950.2 15731 16501 D similar to GB:Z33042, and GB:Z33042; identified by sequence similarity; putative; hypothetical protein 15731..16501 Porphyromonas gingivalis W83 2553296 NP_904373.1 CDS PG0016 NC_002950.2 17087 18436 D sigma-54 dependent DNA-binding response regulator 17087..18436 Porphyromonas gingivalis W83 2552746 NP_904374.1 CDS PG0017 NC_002950.2 18447 19784 D similar to GB:L29642, and PID:461402; identified by sequence similarity; putative; sensor histidine kinase 18447..19784 Porphyromonas gingivalis W83 2551778 NP_904375.1 CDS PG0018 NC_002950.2 19788 22034 D hypothetical protein 19788..22034 Porphyromonas gingivalis W83 2551887 NP_904376.1 CDS PG0019 NC_002950.2 22180 23337 D ISPg4 transposase 22180..23337 Porphyromonas gingivalis W83 2551769 NP_904377.1 CDS PG0020 NC_002950.2 23522 24226 D MarR family transcriptional regulator 23522..24226 Porphyromonas gingivalis W83 2552413 NP_904378.1 CDS PG0021 NC_002950.2 24212 25213 R NifR3 family TIM-barrel protein complement(24212..25213) Porphyromonas gingivalis W83 2551464 NP_904379.1 CDS PG0022 NC_002950.2 25210 26886 R sulfate permease complement(25210..26886) Porphyromonas gingivalis W83 2551516 NP_904380.1 CDS PG0024 NC_002950.2 27872 28528 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 27872..28528 Porphyromonas gingivalis W83 2551876 NP_904381.1 CDS PG0025 NC_002950.2 28597 29256 D fumarylacetoacetate hydrolase 28597..29256 Porphyromonas gingivalis W83 2551787 NP_904382.1 CDS PG0026 NC_002950.2 29374 32745 D hypothetical protein 29374..32745 Porphyromonas gingivalis W83 2552655 NP_904383.1 CDS PG0027 NC_002950.2 32821 33996 D hypothetical protein 32821..33996 Porphyromonas gingivalis W83 2553169 NP_904384.1 CDS ispF NC_002950.2 34003 34491 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 34003..34491 Porphyromonas gingivalis W83 2551764 NP_904385.1 CDS PG0030 NC_002950.2 35986 36462 D cytidine deaminase 35986..36462 Porphyromonas gingivalis W83 2552653 NP_904386.1 CDS PG0031 NC_002950.2 36995 37669 R hypothetical protein complement(36995..37669) Porphyromonas gingivalis W83 2551775 NP_904387.1 CDS PG0032 NC_002950.2 37717 40302 R beta-mannosidase complement(37717..40302) Porphyromonas gingivalis W83 2551507 NP_904388.1 CDS PG0033 NC_002950.2 40332 41630 R RmuC domain-containing protein complement(40332..41630) Porphyromonas gingivalis W83 2553297 NP_904389.1 CDS trx NC_002950.2 42325 42639 R similar to SP:P22527, PID:1181554, and PID:43612; identified by sequence similarity; putative; thioredoxin complement(42325..42639) Porphyromonas gingivalis W83 2551900 NP_904390.1 CDS dnaE NC_002950.2 42688 46374 R similar to SP:P12743; identified by sequence similarity; putative; DNA polymerase III subunit alpha complement(42688..46374) Porphyromonas gingivalis W83 2551752 NP_904391.1 CDS rplS NC_002950.2 46659 47024 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 46659..47024 Porphyromonas gingivalis W83 2552745 NP_904392.1 CDS PG0039 NC_002950.2 47777 47896 D hypothetical protein 47777..47896 Porphyromonas gingivalis W83 2551785 NP_904393.1 CDS PG0040 NC_002950.2 48074 48463 D ISPg5 transposase Orf1 48074..48463 Porphyromonas gingivalis W83 2551486 NP_904394.1 CDS PG0041 NC_002950.2 48517 49455 D ISPg5 transposase Orf2 48517..49455 Porphyromonas gingivalis W83 2551860 NP_904395.1 CDS glyA NC_002950.2 49769 51049 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 49769..51049 Porphyromonas gingivalis W83 2552360 NP_904396.1 CDS nahA NC_002950.2 51206 53539 D similar to GB:D14662, SP:P30041, PID:285949, GB:D14662, SP:P30041, and PID:285949; identified by sequence similarity; putative; beta-hexosaminidase 51206..53539 Porphyromonas gingivalis W83 2552216 NP_904397.1 CDS htpG NC_002950.2 54199 56253 D molecular chaperone; heat shock protein 90 54199..56253 Porphyromonas gingivalis W83 2553144 NP_904398.1 CDS cdsA NC_002950.2 56436 57290 R phosphatidate cytidylyltransferase complement(56436..57290) Porphyromonas gingivalis W83 2552206 NP_904399.1 CDS PG0047 NC_002950.2 57319 59340 R cell division protein FtsH complement(57319..59340) Porphyromonas gingivalis W83 2551512 NP_904400.1 CDS PG0048 NC_002950.2 59544 60647 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(59544..60647) Porphyromonas gingivalis W83 2551866 NP_904401.1 CDS PG0049 NC_002950.2 60666 60830 R hypothetical protein complement(60666..60830) Porphyromonas gingivalis W83 2551869 NP_904402.1 CDS PG0050 NC_002950.2 61056 62213 D ISPg4, transposase 61056..62213 Porphyromonas gingivalis W83 2551874 NP_904403.1 CDS PG0052 NC_002950.2 63559 64746 D sensor histidine kinase 63559..64746 Porphyromonas gingivalis W83 2551880 NP_904404.1 CDS PG0053 NC_002950.2 65057 65176 R hypothetical protein complement(65057..65176) Porphyromonas gingivalis W83 2551881 NP_904405.1 CDS recJ NC_002950.2 65205 66959 D similar to GB:D00173, GB:S46963, SP:P11712, SP:P11713, SP:P33259, SP:P33261, PID:181362, PID:181364, PID:181366, and PID:219571; identified by sequence similarity; putative; single-stranded-DNA-specific exonuclease RecJ 65205..66959 Porphyromonas gingivalis W83 2552385 NP_904406.1 CDS PG0055 NC_002950.2 66956 68011 D similar to SP:Q05370, and PID:49224; identified by sequence similarity; putative; hypothetical protein 66956..68011 Porphyromonas gingivalis W83 2552338 NP_904407.1 CDS PG0056 NC_002950.2 68142 69842 D hypothetical protein 68142..69842 Porphyromonas gingivalis W83 2552384 NP_904408.1 CDS pncB NC_002950.2 69875 71059 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 69875..71059 Porphyromonas gingivalis W83 2552342 NP_904409.1 CDS nadD NC_002950.2 71059 71652 D transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 71059..71652 Porphyromonas gingivalis W83 2552208 NP_904410.1 CDS PG0059 NC_002950.2 71666 72049 D hypothetical protein 71666..72049 Porphyromonas gingivalis W83 2551475 NP_904411.1 CDS PG0060 NC_002950.2 72056 72238 D hypothetical protein 72056..72238 Porphyromonas gingivalis W83 2551817 NP_904412.1 CDS yngK-1 NC_002950.2 72285 73823 D hypothetical protein 72285..73823 Porphyromonas gingivalis W83 2551483 NP_904413.1 CDS PG0062 NC_002950.2 73828 75870 D hypothetical protein 73828..75870 Porphyromonas gingivalis W83 2551802 NP_904414.1 CDS PG0063 NC_002950.2 75968 77146 R outer membrane efflux protein complement(75968..77146) Porphyromonas gingivalis W83 2553300 NP_904415.1 CDS PG0064 NC_002950.2 77164 80283 R CzcA family heavy metal efflux protein complement(77164..80283) Porphyromonas gingivalis W83 2552731 NP_904416.1 CDS PG0065 NC_002950.2 80303 81277 R RND family efflux transporter MFP subunit complement(80303..81277) Porphyromonas gingivalis W83 2551477 NP_904417.1 CDS PG0066 NC_002950.2 81354 81641 R hypothetical protein complement(81354..81641) Porphyromonas gingivalis W83 2551456 NP_904418.1 CDS PG0068 NC_002950.2 81888 82139 D hypothetical protein 81888..82139 Porphyromonas gingivalis W83 2551407 NP_904419.1 CDS PG0069 NC_002950.2 82511 84025 R similar to GB:X73124, SP:P39591, PID:413947, GB:AL009126, GB:X73124, SP:P39591, PID:413947, and GB:AL009126; identified by sequence similarity; putative; hypothetical protein complement(82511..84025) Porphyromonas gingivalis W83 2552354 NP_904420.1 CDS lpxA NC_002950.2 84030 84824 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(84030..84824) Porphyromonas gingivalis W83 2551990 NP_904421.1 CDS PG0071 NC_002950.2 84821 86209 R catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase complement(84821..86209) Porphyromonas gingivalis W83 2552347 NP_904422.1 CDS lpxD NC_002950.2 86188 87237 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(86188..87237) Porphyromonas gingivalis W83 2552395 NP_904423.1 CDS PG0073 NC_002950.2 87330 88160 R identified by match to TIGR protein family HMM TIGR01740; orotidine 5'-monophosphate decarboxylase complement(87330..88160) Porphyromonas gingivalis W83 2552400 NP_904424.1 CDS prfA NC_002950.2 88177 89262 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(88177..89262) Porphyromonas gingivalis W83 2552621 NP_904425.1 CDS PG0075 NC_002950.2 89287 90528 R similar to GB:X80821, and PID:527580; identified by sequence similarity; putative; phosphoribosylformylglycinamidine cyclo-ligase complement(89287..90528) Porphyromonas gingivalis W83 2553379 NP_904426.1 CDS PG0076 NC_002950.2 90482 91423 R similar to GB:D26185, SP:P26497, GB:M59938, PID:143640, PID:40031, PID:467380, and GB:AL009126; identified by sequence similarity; putative; N-acetylmuramoyl-L-alanine amidase complement(90482..91423) Porphyromonas gingivalis W83 2551498 NP_904427.1 CDS PG0078 NC_002950.2 91656 92354 R similar to GP:19714814; identified by sequence similarity; putative; hypothetical protein complement(91656..92354) Porphyromonas gingivalis W83 2552637 NP_904428.1 CDS PG0079 NC_002950.2 92327 93628 R similar to GB:Z36909, and PID:535280; identified by sequence similarity; putative; abortive infection protein complement(92327..93628) Porphyromonas gingivalis W83 2552623 NP_904429.1 CDS PG0080 NC_002950.2 93659 93922 R hypothetical protein complement(93659..93922) Porphyromonas gingivalis W83 2552636 NP_904430.1 CDS PG0081 NC_002950.2 93945 96122 D hypothetical protein 93945..96122 Porphyromonas gingivalis W83 2551862 NP_904431.1 CDS PG0082 NC_002950.2 96184 97086 D hypothetical protein 96184..97086 Porphyromonas gingivalis W83 2552476 NP_904432.1 CDS PG0083 NC_002950.2 97092 97877 D hypothetical protein 97092..97877 Porphyromonas gingivalis W83 2552726 NP_904433.1 CDS sda NC_002950.2 97972 99171 D identified by match to TIGR protein family HMM TIGR01698; L-serine dehydratase 97972..99171 Porphyromonas gingivalis W83 2552213 NP_904434.1 CDS PG0085 NC_002950.2 99312 100616 D similar to GB:M98276, SP:Q04633, PID:151024, and PID:45364; identified by sequence similarity; putative; alpha-galactosidase 99312..100616 Porphyromonas gingivalis W83 2552704 NP_904435.1 CDS PG0086 NC_002950.2 100635 102449 R DEAD/DEAH box helicase complement(100635..102449) Porphyromonas gingivalis W83 2551986 NP_904436.1 CDS PG0087 NC_002950.2 102595 103215 R SIS domain-containing protein complement(102595..103215) Porphyromonas gingivalis W83 2551494 NP_904437.1 CDS PG0088 NC_002950.2 103415 104632 D similar to GB:X03663, GB:X14720, GB:M14002, GB:M14193, SP:P07333, PID:1196434, PID:182522, PID:1915976, PID:1916754, PID:29900, and PID:442423; identified by sequence similarity; putative; M16 family peptidase 103415..104632 Porphyromonas gingivalis W83 2552221 NP_904438.1 CDS PG0090 NC_002950.2 105664 106143 D Dps family protein 105664..106143 Porphyromonas gingivalis W83 2552605 NP_904439.1 CDS PG0091 NC_002950.2 106273 107490 R transporter complement(106273..107490) Porphyromonas gingivalis W83 2552611 NP_904440.1 CDS PG0092 NC_002950.2 107549 108688 R transporter complement(107549..108688) Porphyromonas gingivalis W83 2552600 NP_904441.1 CDS PG0093 NC_002950.2 108733 109728 R HlyD family secretion protein complement(108733..109728) Porphyromonas gingivalis W83 2552602 NP_904442.1 CDS PG0094 NC_002950.2 109778 111283 R similar to SP:P14114, GB:L19417, SP:P46444, and PID:304053; identified by sequence similarity; putative; outer membrane efflux protein complement(109778..111283) Porphyromonas gingivalis W83 2552214 NP_904443.1 CDS mutS NC_002950.2 112178 114853 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(112178..114853) Porphyromonas gingivalis W83 2552448 NP_904444.2 CDS PG0097 NC_002950.2 115146 115874 R hypothetical protein complement(115146..115874) Porphyromonas gingivalis W83 2552464 NP_904445.1 CDS PG0098 NC_002950.2 115835 115933 R hypothetical protein complement(115835..115933) Porphyromonas gingivalis W83 2552542 NP_904446.1 CDS pheT NC_002950.2 115917 118376 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(115917..118376) Porphyromonas gingivalis W83 2551863 NP_904447.1 CDS PG0100 NC_002950.2 119142 119309 R hypothetical protein complement(119142..119309) Porphyromonas gingivalis W83 2551855 NP_904448.1 CDS PG0101 NC_002950.2 119338 119556 D hypothetical protein 119338..119556 Porphyromonas gingivalis W83 2551505 NP_904449.1 CDS PG0102 NC_002950.2 121143 121301 D hypothetical protein 121143..121301 Porphyromonas gingivalis W83 2552472 NP_904450.1 CDS PG0103 NC_002950.2 121430 121585 D hypothetical protein 121430..121585 Porphyromonas gingivalis W83 2552474 NP_904451.1 CDS topB-1 NC_002950.2 125481 127508 D similar to SP:P33446, GB:X64876, and PID:313842; identified by sequence similarity; putative; DNA topoisomerase III 125481..127508 Porphyromonas gingivalis W83 2552210 NP_904452.1 CDS PG0106 NC_002950.2 128858 129994 D similar to GB:Z21876, GB:Z31348, GB:Z31006, GB:Z31007, GB:Z31008, GB:Z31009, GB:Z31010, SP:P33897, PID:1302652, PID:1340149, PID:38591, GB:X01630, GB:L00077, GB:L00078, GB:L00079, GB:L00080, GB:L00081, GB:L00082, GB:L00084, GB:L00083, GB:Z36810, SP:P00966, PID:179047, PID:179057, and PID:28872; identified by sequence similarity; putative; glycosyl transferase 128858..129994 Porphyromonas gingivalis W83 2552518 NP_904453.1 CDS epsD NC_002950.2 130241 131449 D UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 130241..131449 Porphyromonas gingivalis W83 2552211 NP_904454.1 CDS PG0109 NC_002950.2 131471 132694 D hypothetical protein 131471..132694 Porphyromonas gingivalis W83 2552524 NP_904455.1 CDS PG0110 NC_002950.2 132731 133771 D similar to SP:P04170; identified by sequence similarity; putative; glycosyl transferase 132731..133771 Porphyromonas gingivalis W83 2552522 NP_904456.1 CDS PG0111 NC_002950.2 133820 135088 D capsular polysacharride biosynthesis gene 133820..135088 Porphyromonas gingivalis W83 2552223 NP_904457.1 CDS PG0113 NC_002950.2 136065 136922 D identified by match to PFAM protein family HMM PF02522; hypothetical protein 136065..136922 Porphyromonas gingivalis W83 2552224 NP_904458.1 CDS PG0114 NC_002950.2 136919 138058 D hypothetical protein 136919..138058 Porphyromonas gingivalis W83 2552530 NP_904459.1 CDS PG0115 NC_002950.2 138178 138615 D hexapeptide transferase 138178..138615 Porphyromonas gingivalis W83 2551870 NP_904460.1 CDS PG0116 NC_002950.2 138609 139832 D hypothetical protein 138609..139832 Porphyromonas gingivalis W83 2552225 NP_904461.1 CDS PG0117 NC_002950.2 139807 141345 D identified by match to TIGR protein family HMM TIGR01695; polysaccharide transport protein 139807..141345 Porphyromonas gingivalis W83 2552485 NP_904462.1 CDS PG0118 NC_002950.2 141349 142404 D glycosyl transferase group 2 family protein 141349..142404 Porphyromonas gingivalis W83 2552195 NP_904463.1 CDS PG0119 NC_002950.2 142440 143138 D similar to GB:M26167, SP:P10720, and PID:292390; identified by sequence similarity; putative; WecB/TagA/CpsF family glycosyl transferase 142440..143138 Porphyromonas gingivalis W83 2552201 NP_904464.1 CDS epsC NC_002950.2 143144 144304 D UDP-N-acetylglucosamine 2-epimerase 143144..144304 Porphyromonas gingivalis W83 2551825 NP_904465.1 CDS hup-1 NC_002950.2 144608 144874 D similar to GB:L05425, PID:179285, GB:L05425, and PID:179285; identified by sequence similarity; putative; DNA-binding protein HU 144608..144874 Porphyromonas gingivalis W83 2552529 NP_904466.1 CDS PG0123 NC_002950.2 145127 145645 D hypothetical protein 145127..145645 Porphyromonas gingivalis W83 2552199 NP_904467.1 CDS PG0124 NC_002950.2 145704 146324 R hypothetical protein complement(145704..146324) Porphyromonas gingivalis W83 2552573 NP_904468.1 CDS PG0125 NC_002950.2 146328 146876 R hypothetical protein complement(146328..146876) Porphyromonas gingivalis W83 2552198 NP_904469.1 CDS PG0126 NC_002950.2 146873 148108 R type I phosphodiesterase/nucleotide pyrophosphatase complement(146873..148108) Porphyromonas gingivalis W83 2552581 NP_904470.1 CDS hemH NC_002950.2 148690 149727 D ferrochelatase 148690..149727 Porphyromonas gingivalis W83 2552580 NP_904471.1 CDS PG0128 NC_002950.2 149734 150708 D hypothetical protein 149734..150708 Porphyromonas gingivalis W83 2552544 NP_904472.1 CDS PG0129 NC_002950.2 150725 151849 D mannosyltransferase 150725..151849 Porphyromonas gingivalis W83 2552197 NP_904473.1 CDS gpmA NC_002950.2 152012 152758 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(152012..152758) Porphyromonas gingivalis W83 2552191 NP_904474.1 CDS PG0132 NC_002950.2 153019 153114 D hypothetical protein 153019..153114 Porphyromonas gingivalis W83 2552229 NP_904475.1 CDS PG0133 NC_002950.2 154349 155854 R identified by match to TIGR protein family HMM TIGR01695; hypothetical protein complement(154349..155854) Porphyromonas gingivalis W83 2552547 NP_904476.1 CDS mgtE NC_002950.2 155873 157225 R magnesium transporter complement(155873..157225) Porphyromonas gingivalis W83 2552548 NP_904477.1 CDS ksgA NC_002950.2 157257 158033 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(157257..158033) Porphyromonas gingivalis W83 2552537 NP_904478.1 CDS PG0136 NC_002950.2 158164 159213 D hypothetical protein 158164..159213 Porphyromonas gingivalis W83 2552218 NP_904479.1 CDS pepD-1 NC_002950.2 159244 160698 D similar to GB:L19444; identified by sequence similarity; putative; aminoacyl-histidine dipeptidase 159244..160698 Porphyromonas gingivalis W83 2552227 NP_904480.1 CDS fabD NC_002950.2 160813 161694 D malonyl CoA-ACP transacylase 160813..161694 Porphyromonas gingivalis W83 2552554 NP_904481.1 CDS PG0139 NC_002950.2 161876 163231 R similar to GB:U00148, and PID:401712; identified by sequence similarity; putative; lytic murein transglycosylase D complement(161876..163231) Porphyromonas gingivalis W83 2552560 NP_904482.1 CDS PG0140 NC_002950.2 163241 163948 R hypothetical protein complement(163241..163948) Porphyromonas gingivalis W83 2552570 NP_904483.1 CDS spo0J NC_002950.2 163968 164837 R similar to GB:M14219, SP:P07585, PID:181170, and PID:609452; identified by sequence similarity; putative; spoOJ protein complement(163968..164837) Porphyromonas gingivalis W83 2552589 NP_904484.1 CDS soj NC_002950.2 164845 165621 R similar to GB:M25108, SP:P05106, and PID:386833; identified by sequence similarity; putative; SpoOJ regulator protein complement(164845..165621) Porphyromonas gingivalis W83 2552574 NP_904485.1 CDS PG0143 NC_002950.2 165837 166715 R carbon-nitrogen family hydrolase complement(165837..166715) Porphyromonas gingivalis W83 2552220 NP_904486.1 CDS PG0144 NC_002950.2 166733 167758 R hypothetical protein complement(166733..167758) Porphyromonas gingivalis W83 2552483 NP_904487.1 CDS PG0145 NC_002950.2 167971 168549 D hypothetical protein 167971..168549 Porphyromonas gingivalis W83 2551491 NP_904488.1 CDS PG0146 NC_002950.2 168498 169205 R identified by match to PFAM protein family HMM PF00428; hypothetical protein complement(168498..169205) Porphyromonas gingivalis W83 2553201 NP_904489.1 CDS PG0147 NC_002950.2 169218 169757 R hypothetical protein complement(169218..169757) Porphyromonas gingivalis W83 2551983 NP_904490.1 CDS PG0148 NC_002950.2 169744 170997 R sigma-54-dependent transcriptional regulator complement(169744..170997) Porphyromonas gingivalis W83 2551485 NP_904491.1 CDS PG0149 NC_002950.2 171025 172293 R hypothetical protein complement(171025..172293) Porphyromonas gingivalis W83 2552310 NP_904492.1 CDS PG0150 NC_002950.2 172330 173634 R similar to GB:X56550, PID:530026, GB:X56550, and PID:530026; identified by sequence similarity; putative; hypothetical protein complement(172330..173634) Porphyromonas gingivalis W83 2551981 NP_904493.1 CDS ftsY NC_002950.2 173631 174584 R signal recognition particle-docking protein FtsY complement(173631..174584) Porphyromonas gingivalis W83 2551997 NP_904494.1 CDS nspC NC_002950.2 174611 175747 R carboxynorspermidine decarboxylase complement(174611..175747) Porphyromonas gingivalis W83 2552247 NP_904495.1 CDS aspS NC_002950.2 175757 177520 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(175757..177520) Porphyromonas gingivalis W83 2551976 NP_904496.1 CDS ribD NC_002950.2 177951 178943 R riboflavin biosynthesis protein RibD complement(177951..178943) Porphyromonas gingivalis W83 2552261 NP_904497.1 CDS PG0156 NC_002950.2 178968 179849 D HemK family modification methylase 178968..179849 Porphyromonas gingivalis W83 2552236 NP_904498.1 CDS recX NC_002950.2 179846 180331 D identified by match to PFAM protein family HMM PF02631; regulatory protein RecX 179846..180331 Porphyromonas gingivalis W83 2552317 NP_904499.1 CDS PG0158 NC_002950.2 180315 181055 D competence protein F-like protein 180315..181055 Porphyromonas gingivalis W83 2551455 NP_904500.1 CDS pepO NC_002950.2 181185 183254 R endopeptidase PepO complement(181185..183254) Porphyromonas gingivalis W83 2552327 NP_904501.1 CDS PG0160 NC_002950.2 183273 184175 R similar to GB:D10483, SP:P11288, PID:216438, PID:537248, PID:1128976, GB:U00096, and PID:1786187; identified by sequence similarity; putative; hypothetical protein complement(183273..184175) Porphyromonas gingivalis W83 2552265 NP_904502.1 CDS PG0161 NC_002950.2 184357 184506 R hypothetical protein complement(184357..184506) Porphyromonas gingivalis W83 2551448 NP_904503.1 CDS PG0162 NC_002950.2 184595 185176 R ECF subfamily RNA polymerase sigma factor complement(184595..185176) Porphyromonas gingivalis W83 2552235 NP_904504.1 CDS pfk NC_002950.2 185326 186975 R catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; diphosphate--fructose-6-phosphate 1-phosphotransferase complement(185326..186975) Porphyromonas gingivalis W83 2551450 NP_904505.1 CDS PG0164 NC_002950.2 187171 187485 R similar to GP:11323229; identified by sequence similarity; putative; hypothetical protein complement(187171..187485) Porphyromonas gingivalis W83 2552313 NP_904506.1 CDS hslR NC_002950.2 187460 187897 R similar to GB:X75208, SP:P54753, and PID:406868; identified by sequence similarity; putative; heat shock protein 15 complement(187460..187897) Porphyromonas gingivalis W83 2552446 NP_904507.1 CDS pth NC_002950.2 187903 188460 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(187903..188460) Porphyromonas gingivalis W83 2551446 NP_904508.1 CDS rplY NC_002950.2 188602 189180 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 complement(188602..189180) Porphyromonas gingivalis W83 2551445 NP_904509.1 CDS metG NC_002950.2 189792 191834 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 189792..191834 Porphyromonas gingivalis W83 2552318 NP_904510.1 CDS PG0171 NC_002950.2 191864 193636 D 5'-nucleotidase 191864..193636 Porphyromonas gingivalis W83 2552297 NP_904511.1 CDS PG0172 NC_002950.2 193633 194415 D exonuclease 193633..194415 Porphyromonas gingivalis W83 2553133 NP_904512.1 CDS PG0173 NC_002950.2 194478 194831 R similar to SP:P33159, GB:X68014, and PID:40807; identified by sequence similarity; putative; transcriptional regulator complement(194478..194831) Porphyromonas gingivalis W83 2551441 NP_904513.1 CDS PG0174 NC_002950.2 194902 197718 R pyridine nucleotide-disulfide oxidoreductase complement(194902..197718) Porphyromonas gingivalis W83 2552307 NP_904514.1 CDS PG0177 NC_002950.2 199227 200384 D ISPg4, transposase 199227..200384 Porphyromonas gingivalis W83 2551430 NP_904515.1 CDS PG0179 NC_002950.2 201923 202897 D hypothetical protein 201923..202897 Porphyromonas gingivalis W83 2551415 NP_904516.1 CDS PG0180 NC_002950.2 203195 204535 D putative lipoprotein 203195..204535 Porphyromonas gingivalis W83 2551412 NP_904517.1 CDS PG0181 NC_002950.2 204544 205545 D hypothetical protein 204544..205545 Porphyromonas gingivalis W83 2552315 NP_904518.1 CDS PG0182 NC_002950.2 205692 209372 D von Willebrand factor A 205692..209372 Porphyromonas gingivalis W83 2551410 NP_904519.1 CDS PG0183 NC_002950.2 209569 216183 D putative lipoprotein 209569..216183 Porphyromonas gingivalis W83 2551409 NP_904520.1 CDS PG0184 NC_002950.2 216542 217627 D ISPg1, transposase 216542..217627 Porphyromonas gingivalis W83 2552292 NP_904521.1 CDS ragA NC_002950.2 218469 221522 D ragA protein 218469..221522 Porphyromonas gingivalis W83 2551403 NP_904522.1 CDS ragB NC_002950.2 221552 223057 D lipoprotein RagB 221552..223057 Porphyromonas gingivalis W83 2551404 NP_904523.1 CDS PG0188 NC_002950.2 224074 225444 D putative lipoprotein 224074..225444 Porphyromonas gingivalis W83 2552288 NP_904524.1 CDS PG0189 NC_002950.2 225431 226138 D hypothetical protein 225431..226138 Porphyromonas gingivalis W83 2551401 NP_904525.1 CDS uppS NC_002950.2 226216 226980 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 226216..226980 Porphyromonas gingivalis W83 2551402 NP_904526.1 CDS PG0191 NC_002950.2 226998 229673 D outer membrane protein 226998..229673 Porphyromonas gingivalis W83 2552287 NP_904527.1 CDS ompH-1 NC_002950.2 229730 230254 D cationic outer membrane protein OmpH 229730..230254 Porphyromonas gingivalis W83 2551398 NP_904528.1 CDS ompH-2 NC_002950.2 230289 230780 D cationic outer membrane protein OmpH 230289..230780 Porphyromonas gingivalis W83 2551399 NP_904529.1 CDS PG0194 NC_002950.2 231068 231970 D ISPg3, transposase 231068..231970 Porphyromonas gingivalis W83 2552281 NP_904530.1 CDS PG0195 NC_002950.2 232186 232764 D rubrerythrin 232186..232764 Porphyromonas gingivalis W83 2551389 NP_904531.1 CDS PG0196 NC_002950.2 233043 235868 D M16 family peptidase 233043..235868 Porphyromonas gingivalis W83 2551395 NP_904532.1 CDS PG0197 NC_002950.2 236031 236294 R hypothetical protein complement(236031..236294) Porphyromonas gingivalis W83 2552272 NP_904533.1 CDS PG0198 NC_002950.2 237022 237561 D similar to GB:L05186, GB:L13616, SP:Q05397, and PID:439875; identified by sequence similarity; putative; hypothetical protein 237022..237561 Porphyromonas gingivalis W83 2551387 NP_904534.1 CDS PG0199 NC_002950.2 237514 238227 R TatD family protein complement(237514..238227) Porphyromonas gingivalis W83 2551383 NP_904535.1 CDS PG0200 NC_002950.2 238211 238441 R identified by match to TIGR protein family HMM TIGR00278; hypothetical protein complement(238211..238441) Porphyromonas gingivalis W83 2552277 NP_904536.1 CDS rnpA NC_002950.2 238447 238860 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(238447..238860) Porphyromonas gingivalis W83 2551386 NP_904537.1 CDS PG0202 NC_002950.2 238857 239603 R uroporphyrinogen-III synthase complement(238857..239603) Porphyromonas gingivalis W83 2551380 NP_904538.1 CDS PG0203 NC_002950.2 239594 240301 R hypothetical protein complement(239594..240301) Porphyromonas gingivalis W83 2552273 NP_904539.1 CDS PG0204 NC_002950.2 240352 240597 R hypothetical protein complement(240352..240597) Porphyromonas gingivalis W83 2551377 NP_904540.1 CDS prfC NC_002950.2 240603 242183 R peptide chain release factor 3 complement(240603..242183) Porphyromonas gingivalis W83 2551371 NP_904541.1 CDS PG0209 NC_002950.2 243371 244156 D formate/nitrite transporter 243371..244156 Porphyromonas gingivalis W83 2552269 NP_904542.1 CDS PG0210 NC_002950.2 244251 246059 R precorrin-6x reductase complement(244251..246059) Porphyromonas gingivalis W83 2551368 NP_904543.1 CDS cbiGF NC_002950.2 246056 247900 R similar to GB:Z27509, PID:185358, and PID:505446; identified by sequence similarity; putative; cobalamin biosynthesis protein CbiG/precorrin-4 C11-methyltransferase complement(246056..247900) Porphyromonas gingivalis W83 2552022 NP_904544.1 CDS cobL NC_002950.2 247914 249155 R similar to GB:X13482, SP:P09661, and PID:37547; identified by sequence similarity; putative; precorrin-6Y C5,15-methyltransferase complement(247914..249155) Porphyromonas gingivalis W83 2552256 NP_904545.1 CDS PG0213 NC_002950.2 249148 250554 R similar to SP:P37011, GB:U00096, PID:1657597, PID:1773085, and PID:1786601; identified by sequence similarity; putative; precorrin-3 methylase/precorrin-8X methylmutase complement(249148..250554) Porphyromonas gingivalis W83 2551366 NP_904546.1 CDS PG0214 NC_002950.2 251103 251603 D similar to GB:L14266, and PID:293079; identified by sequence similarity; putative; ECF subfamily RNA polymerase sigma factor 251103..251603 Porphyromonas gingivalis W83 2552020 NP_904547.1 CDS PG0215 NC_002950.2 251600 252088 D hypothetical protein 251600..252088 Porphyromonas gingivalis W83 2552246 NP_904548.1 CDS PG0216 NC_002950.2 252096 252596 D hypothetical protein 252096..252596 Porphyromonas gingivalis W83 2552021 NP_904549.1 CDS PG0217 NC_002950.2 252630 253523 D hypothetical protein 252630..253523 Porphyromonas gingivalis W83 2552019 NP_904550.1 CDS PG0218 NC_002950.2 253435 254394 D hypothetical protein 253435..254394 Porphyromonas gingivalis W83 2552254 NP_904551.1 CDS PG0219 NC_002950.2 255100 255648 R similar to GB:U09868, PID:498877, GB:U09868, and PID:498877; identified by sequence similarity; putative; hypothetical protein complement(255100..255648) Porphyromonas gingivalis W83 2552018 NP_904552.1 CDS PG0221 NC_002950.2 255703 255924 R hypothetical protein complement(255703..255924) Porphyromonas gingivalis W83 2552015 NP_904553.1 CDS PG0222 NC_002950.2 256003 256470 R histone-like family DNA-binding protein complement(256003..256470) Porphyromonas gingivalis W83 2552248 NP_904554.1 CDS PG0223 NC_002950.2 257209 257700 R similar to GB:M24777, SP:P06994, GB:M10417, GB:U04742, GB:U04743, GB:U04744, GB:U04745, GB:U04746, GB:U04747, GB:U04748, GB:U04749, GB:U04750, GB:U04751, GB:U04752, GB:U04753, GB:U04754, GB:U04755, GB:U04756, GB:U04757, GB:U04758, GB:U04759, GB:U04760, GB:U04770, GB:Y00129, PID:440001, PID:440003, PID:440005, PID:440009, PID:440011, PID:440013, PID:440017, PID:440019, PID:440021, PID:440023, PID:440025, PID:440027, PID:440029, PID:440031, PID:440033, PID:440035, PID:440037, PID:440057, PID:450385, PID:146799, PID:41989, PID:606175, GB:U00096, PID:1789632, PID:2289251, PID:2289253, PID:2289255, PID:2289257, PID:2289259, PID:2289261, PID:2289263, PID:2289265, PID:2289267, PID:2289269, PID:2289271, PID:2289273, PID:2289275, PID:2289277, PID:2289279, PID:2289281, PID:2289283, PID:2289285, PID:2289287, PID:2289289, PID:2289291, PID:2289293, PID:2289295, PID:2289297, PID:2289299, PID:2289301, PID:2289303, PID:2289305, PID:2289307, PID:2289309, PID:2289311, PID:2289313, PID:2289315, PID:2289317, PID:2289319, PID:22; exonuclease complement(257209..257700) Porphyromonas gingivalis W83 2552012 NP_904555.1 CDS PG0224 NC_002950.2 257704 258342 R similar to GB:Z31385, PID:619427, PID:619615, PID:619616, PID:861002, PID:940532, GB:Z31385, PID:619427, PID:619615, PID:619616, PID:861002, and PID:940532; identified by sequence similarity; putative; hypothetical protein complement(257704..258342) Porphyromonas gingivalis W83 2552014 NP_904556.1 CDS PG0225 NC_002950.2 258575 259732 R ISPg4, transposase complement(258575..259732) Porphyromonas gingivalis W83 2552243 NP_904557.1 CDS PG0226 NC_002950.2 259928 262621 R transglutaminase complement(259928..262621) Porphyromonas gingivalis W83 2552013 NP_904558.1 CDS radA NC_002950.2 262683 264068 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(262683..264068) Porphyromonas gingivalis W83 2552010 NP_904559.1 CDS PG0228 NC_002950.2 264114 265040 R DdaH family protein complement(264114..265040) Porphyromonas gingivalis W83 2552240 NP_904560.1 CDS PG0229 NC_002950.2 265012 265410 D hypothetical protein 265012..265410 Porphyromonas gingivalis W83 2552011 NP_904561.1 CDS PG0230 NC_002950.2 265512 266174 D similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 265512..266174 Porphyromonas gingivalis W83 2552009 NP_904562.1 CDS PG0231 NC_002950.2 266171 267469 D hypothetical protein 266171..267469 Porphyromonas gingivalis W83 2551689 NP_904563.1 CDS PG0232 NC_002950.2 267548 270013 R zinc carboxypeptidase complement(267548..270013) Porphyromonas gingivalis W83 2552008 NP_904564.1 CDS PG0234 NC_002950.2 270851 271474 R hypothetical protein complement(270851..271474) Porphyromonas gingivalis W83 2552007 NP_904565.1 CDS PG0235 NC_002950.2 271769 273292 D carboxyl-terminal protease 271769..273292 Porphyromonas gingivalis W83 2551425 NP_904566.1 CDS PG0236 NC_002950.2 273364 274884 D hypothetical protein 273364..274884 Porphyromonas gingivalis W83 2552001 NP_904567.1 CDS ung NC_002950.2 274918 275586 D Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 274918..275586 Porphyromonas gingivalis W83 2552002 NP_904568.1 CDS PG0240 NC_002950.2 276485 277183 R identified by match to TIGR protein family HMM TIGR01656; HAD superfamily hydrolase complement(276485..277183) Porphyromonas gingivalis W83 2551680 NP_904569.1 CDS PG0241 NC_002950.2 277450 278304 R putative lipoprotein complement(277450..278304) Porphyromonas gingivalis W83 2552000 NP_904570.1 CDS PG0242 NC_002950.2 278349 279050 R similar to GB:D38553, PID:559715, GB:D38553, and PID:559715; identified by sequence similarity; putative; hypothetical protein complement(278349..279050) Porphyromonas gingivalis W83 2551998 NP_904571.1 CDS PG0243 NC_002950.2 279066 279542 R hypothetical protein complement(279066..279542) Porphyromonas gingivalis W83 2551839 NP_904572.1 CDS PG0245 NC_002950.2 279863 280975 R universal stress protein complement(279863..280975) Porphyromonas gingivalis W83 2551460 NP_904573.1 CDS PG0246 NC_002950.2 281140 281331 R similar to GB:D26185, SP:P37573, PID:467476, and GB:AL009126; identified by sequence similarity; putative; hypothetical protein complement(281140..281331) Porphyromonas gingivalis W83 2551457 NP_904574.1 CDS PG0248 NC_002950.2 281600 281932 R translation initation factor SUI1 complement(281600..281932) Porphyromonas gingivalis W83 2551548 NP_904575.1 CDS PG0249 NC_002950.2 282029 283888 R similar to SP:P35887, GB:U01667, and PID:403535; identified by sequence similarity; putative; oxaloacetate decarboxylase complement(282029..283888) Porphyromonas gingivalis W83 2551459 NP_904576.1 CDS PG0250 NC_002950.2 283995 284171 R hypothetical protein complement(283995..284171) Porphyromonas gingivalis W83 2551972 NP_904577.1 CDS PG0253 NC_002950.2 284747 285205 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 284747..285205 Porphyromonas gingivalis W83 2551447 NP_904578.1 CDS nusA NC_002950.2 285252 286586 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 285252..286586 Porphyromonas gingivalis W83 2551971 NP_904579.1 CDS infB NC_002950.2 286682 289621 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 286682..289621 Porphyromonas gingivalis W83 2551965 NP_904580.1 CDS PG0256 NC_002950.2 289649 290140 D CvpA family protein 289649..290140 Porphyromonas gingivalis W83 2551832 NP_904581.1 CDS PG0257 NC_002950.2 290174 291619 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 290174..291619 Porphyromonas gingivalis W83 2551968 NP_904582.1 CDS PG0258 NC_002950.2 291659 292411 D ABC transporter ATP-binding protein 291659..292411 Porphyromonas gingivalis W83 2551969 NP_904583.1 CDS PG0259 NC_002950.2 292418 293761 D similar to GB:L36531, SP:P53708, PID:559056, GB:L36531, SP:P53708, and PID:559056; identified by sequence similarity; putative; hypothetical protein 292418..293761 Porphyromonas gingivalis W83 2551816 NP_904584.1 CDS PG0261 NC_002950.2 293952 294854 R ISPg3, transposase complement(293952..294854) Porphyromonas gingivalis W83 2551966 NP_904585.1 CDS tyrS NC_002950.2 295803 297095 D tyrosyl-tRNA synthetase 295803..297095 Porphyromonas gingivalis W83 2551717 NP_904586.1 CDS PG0264 NC_002950.2 297115 298182 D glycosyl transferase group 2 family protein 297115..298182 Porphyromonas gingivalis W83 2551967 NP_904587.1 CDS PG0265 NC_002950.2 298483 298641 R hypothetical protein complement(298483..298641) Porphyromonas gingivalis W83 2551963 NP_904588.1 CDS argS NC_002950.2 299240 301033 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 299240..301033 Porphyromonas gingivalis W83 2551978 NP_904589.1 CDS mnmA NC_002950.2 301038 302123 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 301038..302123 Porphyromonas gingivalis W83 2551962 NP_904590.1 CDS xth NC_002950.2 302168 302932 D exodeoxyribonuclease III 302168..302932 Porphyromonas gingivalis W83 2551957 NP_904591.1 CDS oxyR NC_002950.2 303005 303931 D similar to GB:L04510, SP:P36406, and PID:292070; identified by sequence similarity; putative; redox-sensitive transcriptional activator OxyR 303005..303931 Porphyromonas gingivalis W83 2551833 NP_904592.1 CDS ssb NC_002950.2 303982 304452 D similar to GB:L04572, SP:P28689, GB:L05381, PID:145787, PID:146393, GB:U00096, PID:1736484, and PID:1788147; identified by sequence similarity; putative; ssDNA-binding protein 303982..304452 Porphyromonas gingivalis W83 2551960 NP_904593.1 CDS PG0272 NC_002950.2 304539 305798 D similar to GP:9837392, and GP:12024595; identified by sequence similarity; putative; hypothetical protein 304539..305798 Porphyromonas gingivalis W83 2551961 NP_904594.1 CDS PG0273 NC_002950.2 305834 306430 D identified by match to TIGR protein family HMM TIGR00556; 4'-phosphopantetheinyl transferase 305834..306430 Porphyromonas gingivalis W83 2551840 NP_904595.1 CDS PG0274 NC_002950.2 306473 306841 D hypothetical protein 306473..306841 Porphyromonas gingivalis W83 2551956 NP_904596.1 CDS PG0275 NC_002950.2 307045 307554 R similar to SP:P31092, GB:M34046, GB:M61886, GB:J04129, and SP:P09466; identified by sequence similarity; putative; thioredoxin family protein complement(307045..307554) Porphyromonas gingivalis W83 2551958 NP_904597.1 CDS PG0276 NC_002950.2 307692 308879 R similar to GB:X53463, SP:P18283, and PID:579930; identified by sequence similarity; putative; hypothetical protein complement(307692..308879) Porphyromonas gingivalis W83 2551823 NP_904598.1 CDS PG0277 NC_002950.2 308996 310126 D similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase 308996..310126 Porphyromonas gingivalis W83 2551955 NP_904599.1 CDS PG0278 NC_002950.2 310187 310537 D hypothetical protein 310187..310537 Porphyromonas gingivalis W83 2551954 NP_904600.1 CDS maeB NC_002950.2 310765 313044 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(310765..313044) Porphyromonas gingivalis W83 2551819 NP_904601.1 CDS PG0280 NC_002950.2 313387 314715 R ABC transporter permease complement(313387..314715) Porphyromonas gingivalis W83 2551951 NP_904602.1 CDS PG0281 NC_002950.2 314737 316113 R ABC transporter permease complement(314737..316113) Porphyromonas gingivalis W83 2551952 NP_904603.1 CDS PG0282 NC_002950.2 316334 317005 R similar to GB:Z27456, GB:Z29610, GB:Z29611, GB:Z30082, GB:Z18918, PID:1335183, PID:505397, PID:553415, PID:553456, PID:598160, PID:780285, and PID:860980; identified by sequence similarity; putative; ABC transporter ATP-binding protein complement(316334..317005) Porphyromonas gingivalis W83 2551724 NP_904604.1 CDS PG0283 NC_002950.2 317085 318335 R similar to GB:D28503, PID:556484, and SP:Q59295; identified by sequence similarity; putative; RND family efflux transporter MFP subunit complement(317085..318335) Porphyromonas gingivalis W83 2551953 NP_904605.1 CDS PG0285 NC_002950.2 318599 320104 D identified by match to TIGR protein family HMM TIGR01692; hypothetical protein 318599..320104 Porphyromonas gingivalis W83 2551950 NP_904606.1 CDS PG0286 NC_002950.2 320257 320514 D hypothetical protein 320257..320514 Porphyromonas gingivalis W83 2551804 NP_904607.1 CDS PG0287 NC_002950.2 320597 321538 D hypothetical protein 320597..321538 Porphyromonas gingivalis W83 2551947 NP_904608.1 CDS PG0288 NC_002950.2 321595 323070 D putative lipoprotein 321595..323070 Porphyromonas gingivalis W83 2551949 NP_904609.1 CDS PG0289 NC_002950.2 323000 324040 D hypothetical protein 323000..324040 Porphyromonas gingivalis W83 2551803 NP_904610.1 CDS PG0290 NC_002950.2 324044 325594 D hypothetical protein 324044..325594 Porphyromonas gingivalis W83 2551948 NP_904611.1 CDS PG0291 NC_002950.2 325597 326682 D hypothetical protein 325597..326682 Porphyromonas gingivalis W83 2551946 NP_904612.1 CDS PG0293 NC_002950.2 328183 328761 R similar to GB:M76558, PID:179752, and PID:179764; identified by sequence similarity; putative; secretion activator protein complement(328183..328761) Porphyromonas gingivalis W83 2551938 NP_904613.1 CDS PG0294 NC_002950.2 329361 330251 R glycosyl transferase group 2 family protein complement(329361..330251) Porphyromonas gingivalis W83 2551794 NP_904614.1 CDS dprA NC_002950.2 330266 331390 R similar to GB:M33916, GB:M37840, PID:1008917, PID:1008919, PID:149926, and PID:149976; identified by sequence similarity; putative; DNA processing protein DprA complement(330266..331390) Porphyromonas gingivalis W83 2551943 NP_904615.1 CDS PG0296 NC_002950.2 331383 335087 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(331383..335087) Porphyromonas gingivalis W83 2551944 NP_904616.1 CDS PG0297 NC_002950.2 335387 335608 R hypothetical protein complement(335387..335608) Porphyromonas gingivalis W83 2551789 NP_904617.1 CDS PG0300 NC_002950.2 336710 338002 D hypothetical protein 336710..338002 Porphyromonas gingivalis W83 2551940 NP_904618.1 CDS PG0302 NC_002950.2 338359 338781 D hypothetical protein 338359..338781 Porphyromonas gingivalis W83 2551936 NP_904619.1 CDS PG0303 NC_002950.2 338791 339663 D involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate; ferredoxin 338791..339663 Porphyromonas gingivalis W83 2551845 NP_904620.1 CDS PG0304 NC_002950.2 339699 341030 D similar to GB:X69604, PID:436326, and PID:928987; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit C 339699..341030 Porphyromonas gingivalis W83 2551939 NP_904621.1 CDS PG0305 NC_002950.2 341046 342029 D similar to GB:X71398, GB:X69601, GB:X69603, PID:436320, PID:436324, and PID:436406; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit D 341046..342029 Porphyromonas gingivalis W83 2551937 NP_904622.1 CDS PG0306 NC_002950.2 342056 342703 D similar to GB:S66431, SP:P29375, GB:M85252, and PID:155352; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit G 342056..342703 Porphyromonas gingivalis W83 2551917 NP_904623.1 CDS PG0307 NC_002950.2 342700 343290 D in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 342700..343290 Porphyromonas gingivalis W83 2551703 NP_904624.1 CDS PG0308 NC_002950.2 343315 343887 D similar to GB:M22902, SP:P40768, PID:143674, GB:X58072, GB:M69106, GB:X55037, SP:P23771, PID:31662, PID:31664, and PID:31666; identified by sequence similarity; putative; RnfABCDGE type electron transport complex subunit A 343315..343887 Porphyromonas gingivalis W83 2551704 NP_904625.1 CDS apbE NC_002950.2 344100 345113 R thiamine biosynthesis lipoprotein ApbE complement(344100..345113) Porphyromonas gingivalis W83 2551699 NP_904626.1 CDS PG0310 NC_002950.2 345110 345649 R similar to SP:P37718, GB:X54676, and PID:580743; identified by sequence similarity; putative; nitroreductase complement(345110..345649) Porphyromonas gingivalis W83 2551705 NP_904627.1 CDS PG0311 NC_002950.2 345649 346602 R similar to GB:L25659, SP:P29486, GB:X64098, PID:398397, PID:409772, PID:48405, SP:P37828, and PID:901847; identified by sequence similarity; putative; glycosyl transferase group 2 family protein complement(345649..346602) Porphyromonas gingivalis W83 2551706 NP_904628.1 CDS PG0312 NC_002950.2 346599 347138 R hypothetical protein complement(346599..347138) Porphyromonas gingivalis W83 2551683 NP_904629.1 CDS PG0313 NC_002950.2 347506 347814 D hypothetical protein 347506..347814 Porphyromonas gingivalis W83 2551707 NP_904630.2 CDS rplU NC_002950.2 347875 348192 D similar to GB:X03072, SP:P04628, and PID:33936; identified by sequence similarity; putative; 50S ribosomal protein L21 347875..348192 Porphyromonas gingivalis W83 2551708 NP_904631.1 CDS rpmA NC_002950.2 348220 348477 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 348220..348477 Porphyromonas gingivalis W83 2551693 NP_904632.1 CDS serS NC_002950.2 348577 349848 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 348577..349848 Porphyromonas gingivalis W83 2551709 NP_904633.1 CDS PG0317 NC_002950.2 349861 352521 R M49 family peptidase complement(349861..352521) Porphyromonas gingivalis W83 2551710 NP_904634.1 CDS PG0319 NC_002950.2 353089 353517 D identified by match to PFAM protein family HMM PF04975; hypothetical protein 353089..353517 Porphyromonas gingivalis W83 2551688 NP_904635.1 CDS PG0320 NC_002950.2 353549 354637 D hypothetical protein 353549..354637 Porphyromonas gingivalis W83 2551712 NP_904636.1 CDS PG0321 NC_002950.2 354788 355819 D functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins; arginine/ornithine transport system ATPase 354788..355819 Porphyromonas gingivalis W83 2551897 NP_904637.1 CDS PG0322 NC_002950.2 355848 357026 D similar to GB:U01100, and PID:434022; identified by sequence similarity; putative; serine/threonine transporter 355848..357026 Porphyromonas gingivalis W83 2551681 NP_904638.1 CDS PG0323 NC_002950.2 357149 357478 R hypothetical protein complement(357149..357478) Porphyromonas gingivalis W83 2551916 NP_904639.1 CDS hutH NC_002950.2 357679 359172 R similar to GB:D13563, and PID:216220; identified by sequence similarity; putative; histidine ammonia-lyase complement(357679..359172) Porphyromonas gingivalis W83 2551871 NP_904640.1 CDS PG0325 NC_002950.2 359175 359804 R similar to GB:X76383, PID:434360, GB:X76383, and PID:434360; identified by sequence similarity; putative; hypothetical protein complement(359175..359804) Porphyromonas gingivalis W83 2551675 NP_904641.1 CDS PG0326 NC_002950.2 359829 361064 R hypothetical protein complement(359829..361064) Porphyromonas gingivalis W83 2551883 NP_904642.1 CDS PG0327 NC_002950.2 360997 362151 R hypothetical protein complement(360997..362151) Porphyromonas gingivalis W83 2551909 NP_904643.1 CDS hutI NC_002950.2 362245 363516 R catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase complement(362245..363516) Porphyromonas gingivalis W83 2551671 NP_904644.1 CDS PG0329 NC_002950.2 363617 364519 R similar to GB:M22589, SP:P13423, and PID:143282; identified by sequence similarity; putative; formiminotransferase-cyclodeaminase-like protein complement(363617..364519) Porphyromonas gingivalis W83 2551886 NP_904645.1 CDS PG0330 NC_002950.2 364568 365083 R similar to GB:L05147, SP:P51452, and PID:181840; identified by sequence similarity; putative; histone-like family DNA-binding protein complement(364568..365083) Porphyromonas gingivalis W83 2551910 NP_904646.1 CDS rho NC_002950.2 365759 367735 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 365759..367735 Porphyromonas gingivalis W83 2551665 NP_904647.1 CDS PG0333 NC_002950.2 367963 368871 D hypothetical protein 367963..368871 Porphyromonas gingivalis W83 2551914 NP_904648.1 CDS PG0334 NC_002950.2 368882 369841 R similar to SP:P10245; identified by sequence similarity; putative; glycosyl transferase group 2 family protein complement(368882..369841) Porphyromonas gingivalis W83 2551913 NP_904649.1 CDS miaA NC_002950.2 369894 370796 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(369894..370796) Porphyromonas gingivalis W83 2551663 NP_904650.1 CDS PG0336 NC_002950.2 370813 371382 R hypothetical protein complement(370813..371382) Porphyromonas gingivalis W83 2551630 NP_904651.1 CDS PG0337 NC_002950.2 371467 371619 R hypothetical protein complement(371467..371619) Porphyromonas gingivalis W83 2551627 NP_904652.1 CDS PG0338 NC_002950.2 371670 375197 D hypothetical protein 371670..375197 Porphyromonas gingivalis W83 2551660 NP_904653.1 CDS PG0339 NC_002950.2 375202 375747 D hypothetical protein 375202..375747 Porphyromonas gingivalis W83 2551931 NP_904654.1 CDS PG0340 NC_002950.2 376206 376496 D hypothetical protein 376206..376496 Porphyromonas gingivalis W83 2551902 NP_904655.1 CDS megL NC_002950.2 377271 378452 R catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine; methionine gamma-lyase complement(377271..378452) Porphyromonas gingivalis W83 2551655 NP_904656.1 CDS PG0344 NC_002950.2 378633 380102 R purple acid phosphatase complement(378633..380102) Porphyromonas gingivalis W83 2551905 NP_904657.1 CDS PG0345 NC_002950.2 380105 380698 R hypothetical protein complement(380105..380698) Porphyromonas gingivalis W83 2551628 NP_904658.1 CDS engB NC_002950.2 380799 381404 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 380799..381404 Porphyromonas gingivalis W83 2551650 NP_904659.1 CDS galE NC_002950.2 381414 382442 D similar to GB:M31516, GB:M30142, SP:P08174, and PID:181476; identified by sequence similarity; putative; UDP-glucose 4-epimerase 381414..382442 Porphyromonas gingivalis W83 2551890 NP_904660.1 CDS recG NC_002950.2 382485 384581 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 382485..384581 Porphyromonas gingivalis W83 2551617 NP_904661.1 CDS PG0349 NC_002950.2 384599 385351 D similar to SP:Q05426, and PID:150149; identified by sequence similarity; putative; HAD superfamily hydrolase 384599..385351 Porphyromonas gingivalis W83 2551648 NP_904662.1 CDS PG0350 NC_002950.2 385446 386900 R internalin-like protein complement(385446..386900) Porphyromonas gingivalis W83 2551891 NP_904663.1 CDS PG0351 NC_002950.2 386914 387174 D hypothetical protein 386914..387174 Porphyromonas gingivalis W83 2551601 NP_904664.1 CDS PG0352 NC_002950.2 387327 388907 D similar to GB:L04751, SP:Q02928, PID:181397, PID:535787, PID:994758, GB:L04751, SP:Q02928, PID:181397, PID:535787, and PID:994758; identified by sequence similarity; putative; sialidase 387327..388907 Porphyromonas gingivalis W83 2551624 NP_904665.1 CDS PG0354 NC_002950.2 389221 389373 R hypothetical protein complement(389221..389373) Porphyromonas gingivalis W83 2551915 NP_904666.1 CDS PG0355 NC_002950.2 389784 390767 D hypothetical protein 389784..390767 Porphyromonas gingivalis W83 2551592 NP_904667.1 CDS PG0356 NC_002950.2 390751 391533 D hypothetical protein 390751..391533 Porphyromonas gingivalis W83 2551920 NP_904668.1 CDS pyrB NC_002950.2 391580 392494 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 391580..392494 Porphyromonas gingivalis W83 2551619 NP_904669.1 CDS pyrI NC_002950.2 392507 392962 D involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase 392507..392962 Porphyromonas gingivalis W83 2551588 NP_904670.1 CDS PG0359 NC_002950.2 392991 393578 D identified by match to PFAM protein family HMM PF01613; flavin reductase domain-containing protein 392991..393578 Porphyromonas gingivalis W83 2551918 NP_904671.1 CDS PG0360 NC_002950.2 393622 394212 D similar to GB:S46950, SP:P29274, GB:U20231, PID:1117998, PID:177892, and PID:400452; identified by sequence similarity; putative; hypothetical protein 393622..394212 Porphyromonas gingivalis W83 2551622 NP_904672.1 CDS PG0361 NC_002950.2 394234 395541 D similar to SP:P37742, GB:L11721, SP:P24175, GB:M77127, PID:147165, PID:304879, PID:415624, GB:U00096, PID:1407617, PID:1736750, PID:1736754, and PID:1788361; identified by sequence similarity; putative; hypothetical protein 394234..395541 Porphyromonas gingivalis W83 2551576 NP_904673.1 CDS PG0362 NC_002950.2 395441 397609 D hypothetical protein 395441..397609 Porphyromonas gingivalis W83 2551921 NP_904674.1 CDS PG0363 NC_002950.2 397610 398437 D hypothetical protein 397610..398437 Porphyromonas gingivalis W83 2551618 NP_904675.1 CDS PG0364 NC_002950.2 398500 399705 R hypothetical protein complement(398500..399705) Porphyromonas gingivalis W83 2551572 NP_904676.1 CDS PG0365 NC_002950.2 399702 400268 R identified by match to PFAM protein family HMM PF01612; 3'-5' exonuclease complement(399702..400268) Porphyromonas gingivalis W83 2551888 NP_904677.1 CDS PG0366 NC_002950.2 400345 400905 R hypothetical protein complement(400345..400905) Porphyromonas gingivalis W83 2551922 NP_904678.1 CDS PG0368 NC_002950.2 401385 403319 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 401385..403319 Porphyromonas gingivalis W83 2551569 NP_904679.1 CDS coaD NC_002950.2 403350 403811 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 403350..403811 Porphyromonas gingivalis W83 2551933 NP_904680.1 CDS PG0371 NC_002950.2 404183 404284 D hypothetical protein 404183..404284 Porphyromonas gingivalis W83 2551613 NP_904681.1 CDS PG0373 NC_002950.2 404845 405513 D hypothetical protein 404845..405513 Porphyromonas gingivalis W83 2551901 NP_904682.1 CDS PG0374 NC_002950.2 405538 405654 R hypothetical protein complement(405538..405654) Porphyromonas gingivalis W83 2551926 NP_904683.1 CDS rplM NC_002950.2 406074 406529 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 406074..406529 Porphyromonas gingivalis W83 2551925 NP_904684.1 CDS rpsI NC_002950.2 406539 406925 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 406539..406925 Porphyromonas gingivalis W83 2551892 NP_904685.1 CDS rpsB NC_002950.2 407060 407905 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 407060..407905 Porphyromonas gingivalis W83 2551924 NP_904686.1 CDS tsf NC_002950.2 408044 408868 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 408044..408868 Porphyromonas gingivalis W83 2551929 NP_904687.1 CDS uvrB NC_002950.2 409242 411278 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 409242..411278 Porphyromonas gingivalis W83 2551907 NP_904688.1 CDS PG0381 NC_002950.2 411275 412795 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(411275..412795) Porphyromonas gingivalis W83 2551911 NP_904689.1 CDS PG0382 NC_002950.2 413331 414803 D similar to GP:17430597; identified by sequence similarity; putative; hypothetical protein 413331..414803 Porphyromonas gingivalis W83 2551928 NP_904690.1 CDS PG0383 NC_002950.2 414906 416225 D membrane-associated zinc metalloprotease 414906..416225 Porphyromonas gingivalis W83 2551570 NP_904691.1 CDS PG0384 NC_002950.2 416235 418757 D Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.; similar to SP:P07324, and PID:40563; identified by sequence similarity; putative; MutS2 family protein 416235..418757 Porphyromonas gingivalis W83 2551927 NP_904692.1 CDS rpsU NC_002950.2 418919 419110 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 418919..419110 Porphyromonas gingivalis W83 2551903 NP_904693.1 CDS PG0386 NC_002950.2 419187 420389 D phage integrase site specific recombinase 419187..420389 Porphyromonas gingivalis W83 2551578 NP_904694.1 CDS tuf NC_002950.2 420783 421970 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 420783..421970 Porphyromonas gingivalis W83 2551600 NP_904695.1 CDS nusG NC_002950.2 422354 422893 D similar to GB:L13858, PID:1220368, and PID:306780; identified by sequence similarity; putative; transcription antitermination protein NusG 422354..422893 Porphyromonas gingivalis W83 2551597 NP_904696.1 CDS rplK NC_002950.2 422962 423399 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 422962..423399 Porphyromonas gingivalis W83 2551589 NP_904697.1 CDS rplA NC_002950.2 423420 424118 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 423420..424118 Porphyromonas gingivalis W83 2551593 NP_904698.1 CDS rplJ NC_002950.2 424134 424658 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 424134..424658 Porphyromonas gingivalis W83 2551584 NP_904699.1 CDS rplL NC_002950.2 424700 425077 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 424700..425077 Porphyromonas gingivalis W83 2551575 NP_904700.1 CDS rpoB NC_002950.2 425189 428998 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 425189..428998 Porphyromonas gingivalis W83 2551568 NP_904701.1 CDS rpoC NC_002950.2 429064 433365 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 429064..433365 Porphyromonas gingivalis W83 2551908 NP_904702.1 CDS PG0396 NC_002950.2 433653 434351 D similar to GB:L07499, SP:P34918, and PID:410113; identified by sequence similarity; putative; Crp/FNR family transcriptional regulator 433653..434351 Porphyromonas gingivalis W83 2551906 NP_904703.1 CDS PG0397 NC_002950.2 434402 434692 R hypothetical protein complement(434402..434692) Porphyromonas gingivalis W83 2551912 NP_904704.1 CDS recF NC_002950.2 434706 435800 R similar to GB:S45332, GB:M34986, SP:P19235, PID:182134, PID:182201, PID:182245, PID:553281, GB:S45332, GB:M34986, SP:P19235, PID:182134, PID:182201, PID:182245, and PID:553281; identified by sequence similarity; putative; recF protein complement(434706..435800) Porphyromonas gingivalis W83 2551893 NP_904705.1 CDS PG0399 NC_002950.2 435797 436327 R putative lipoprotein complement(435797..436327) Porphyromonas gingivalis W83 2551894 NP_904706.1 CDS PG0400 NC_002950.2 436335 437618 R hypothetical protein complement(436335..437618) Porphyromonas gingivalis W83 2551567 NP_904707.1 CDS PG0401 NC_002950.2 437855 439396 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(437855..439396) Porphyromonas gingivalis W83 2551571 NP_904708.1 CDS PG0403 NC_002950.2 439543 439851 R identified by match to PFAM protein family HMM PF05164; hypothetical protein complement(439543..439851) Porphyromonas gingivalis W83 2551579 NP_904709.1 CDS PG0404 NC_002950.2 439858 440196 R identified by match to TIGR protein family HMM TIGR01682; hypothetical protein complement(439858..440196) Porphyromonas gingivalis W83 2551580 NP_904710.1 CDS PG0408 NC_002950.2 441042 441575 R hypothetical protein complement(441042..441575) Porphyromonas gingivalis W83 2551574 NP_904711.1 CDS PG0409 NC_002950.2 441589 442410 D hypothetical protein 441589..442410 Porphyromonas gingivalis W83 2551591 NP_904712.1 CDS PG0410 NC_002950.2 442757 446641 D hypothetical protein 442757..446641 Porphyromonas gingivalis W83 2551594 NP_904713.1 CDS PG0411 NC_002950.2 446641 449418 D similar to GP:10954334, and GP:2182812; identified by sequence similarity; putative; hemagglutinin 446641..449418 Porphyromonas gingivalis W83 2551598 NP_904714.1 CDS mutL NC_002950.2 449674 451530 R similar to SP:P14160, GB:M33208, GB:M33209, GB:M33210, SP:P09619, and PID:532593; identified by sequence similarity; putative; DNA mismatch repair protein MutL complement(449674..451530) Porphyromonas gingivalis W83 2551596 NP_904715.1 CDS PG0413 NC_002950.2 451527 451871 R hypothetical protein complement(451527..451871) Porphyromonas gingivalis W83 2551599 NP_904716.1 CDS PG0414 NC_002950.2 451862 453742 R hypothetical protein complement(451862..453742) Porphyromonas gingivalis W83 2551602 NP_904717.1 CDS PG0415 NC_002950.2 453804 455186 R PpiC-type peptidyl-prolyl cis-trans isomerase complement(453804..455186) Porphyromonas gingivalis W83 2551604 NP_904718.1 CDS recQ-1 NC_002950.2 455223 457400 R ATP-dependent DNA helicase RecQ complement(455223..457400) Porphyromonas gingivalis W83 2551603 NP_904719.1 CDS clpX NC_002950.2 457479 458714 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(457479..458714) Porphyromonas gingivalis W83 2551605 NP_904720.1 CDS clpP NC_002950.2 458751 459419 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(458751..459419) Porphyromonas gingivalis W83 2551607 NP_904721.1 CDS PG0419 NC_002950.2 459792 460697 R hypothetical protein complement(459792..460697) Porphyromonas gingivalis W83 2551611 NP_904722.1 CDS PG0421 NC_002950.2 460926 461783 R hypothetical protein complement(460926..461783) Porphyromonas gingivalis W83 2551612 NP_904723.1 CDS PG0422 NC_002950.2 462021 462392 R hypothetical protein complement(462021..462392) Porphyromonas gingivalis W83 2551606 NP_904724.1 CDS PG0423 NC_002950.2 462391 462633 D hypothetical protein 462391..462633 Porphyromonas gingivalis W83 2551614 NP_904725.1 CDS PG0424 NC_002950.2 462608 463273 D hypothetical protein 462608..463273 Porphyromonas gingivalis W83 2551623 NP_904726.1 CDS PG0425 NC_002950.2 463309 464079 R similar to GB:M13994, GB:M13995, GB:M14745, GB:L21669, GB:L21667, GB:L21668, GB:S72602, GB:M13415, GB:M15878, SP:P10415, SP:P10416, and PID:179369; identified by sequence similarity; putative; esterase complement(463309..464079) Porphyromonas gingivalis W83 2551620 NP_904727.1 CDS PG0426 NC_002950.2 464250 465188 R identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 complement(464250..465188) Porphyromonas gingivalis W83 2551625 NP_904728.1 CDS PG0427 NC_002950.2 465242 465631 R ISPg5, transposase Orf1 complement(465242..465631) Porphyromonas gingivalis W83 2551629 NP_904729.1 CDS PG0428 NC_002950.2 465843 466067 R hypothetical protein complement(465843..466067) Porphyromonas gingivalis W83 2551631 NP_904730.1 CDS PG0429 NC_002950.2 466240 468099 D pyruvate synthase 466240..468099 Porphyromonas gingivalis W83 2551633 NP_904731.1 CDS PG0430 NC_002950.2 468126 469133 D catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 468126..469133 Porphyromonas gingivalis W83 2551632 NP_904732.1 CDS PG0431 NC_002950.2 469118 469234 D hypothetical protein 469118..469234 Porphyromonas gingivalis W83 2551634 NP_904733.1 CDS PG0432 NC_002950.2 469363 470769 R similar to SP:P08486, and PID:153155; identified by sequence similarity; putative; NOL1/NOP2/sun family protein complement(469363..470769) Porphyromonas gingivalis W83 2551639 NP_904734.1 CDS PG0433 NC_002950.2 470773 471486 R similar to GB:L11577; identified by sequence similarity; putative; tetrapyrrole methylase complement(470773..471486) Porphyromonas gingivalis W83 2551638 NP_904735.1 CDS PG0434 NC_002950.2 471524 472603 R hypothetical protein complement(471524..472603) Porphyromonas gingivalis W83 2551419 NP_904736.1 CDS PG0435 NC_002950.2 472798 473541 R capsular polysaccharide biosynthesis protein complement(472798..473541) Porphyromonas gingivalis W83 2551635 NP_904737.1 CDS PG0436 NC_002950.2 473551 476019 R capsular polysaccharide transport protein complement(473551..476019) Porphyromonas gingivalis W83 2551640 NP_904738.1 CDS PG0437 NC_002950.2 476044 476967 R similar to SP:P17161, GB:X03147, PID:43926, SP:P17161, GB:X03147, and PID:43926; identified by sequence similarity; putative; BexD/CtrA/VexA family polysaccharide export protein complement(476044..476967) Porphyromonas gingivalis W83 2551641 NP_904739.1 CDS PG0438 NC_002950.2 477024 477974 D identified by match to TIGR protein family HMM TIGR01200; hypothetical protein 477024..477974 Porphyromonas gingivalis W83 2551642 NP_904740.1 CDS PG0439 NC_002950.2 477971 478870 D hypothetical protein 477971..478870 Porphyromonas gingivalis W83 2551626 NP_904741.1 CDS PG0441 NC_002950.2 478874 481507 D hypothetical protein 478874..481507 Porphyromonas gingivalis W83 2551653 NP_904742.1 CDS PG0442 NC_002950.2 481604 481972 R hypothetical protein complement(481604..481972) Porphyromonas gingivalis W83 2551656 NP_904743.1 CDS PG0443 NC_002950.2 482161 483207 D hemagglutinin-like protein 482161..483207 Porphyromonas gingivalis W83 2551661 NP_904744.1 CDS PG0444 NC_002950.2 483396 485375 D OPT family oligopeptide transporter 483396..485375 Porphyromonas gingivalis W83 2551664 NP_904745.1 CDS pepT NC_002950.2 485392 486609 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 485392..486609 Porphyromonas gingivalis W83 2551666 NP_904746.1 CDS thiF NC_002950.2 486739 487446 D thiF protein 486739..487446 Porphyromonas gingivalis W83 2551672 NP_904747.2 CDS PG0447 NC_002950.2 487502 488236 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 487502..488236 Porphyromonas gingivalis W83 2551677 NP_904748.1 CDS PG0448 NC_002950.2 488229 489533 D hypothetical protein 488229..489533 Porphyromonas gingivalis W83 2551682 NP_904749.1 CDS PG0449 NC_002950.2 489545 490927 D hypothetical protein 489545..490927 Porphyromonas gingivalis W83 2551686 NP_904750.1 CDS PG0450 NC_002950.2 490952 491662 D hypothetical protein 490952..491662 Porphyromonas gingivalis W83 2551694 NP_904751.1 CDS PG0451 NC_002950.2 491659 492912 D hypothetical protein 491659..492912 Porphyromonas gingivalis W83 2551697 NP_904752.1 CDS PG0452 NC_002950.2 493019 495166 D hypothetical protein 493019..495166 Porphyromonas gingivalis W83 2551700 NP_904753.1 CDS PG0453 NC_002950.2 495456 496730 D hypothetical protein 495456..496730 Porphyromonas gingivalis W83 2551847 NP_904754.1 CDS PG0456 NC_002950.2 497855 499894 D phosphotransferase domain-containing protein 497855..499894 Porphyromonas gingivalis W83 2551788 NP_904755.1 CDS PG0457 NC_002950.2 499875 500168 D hypothetical protein 499875..500168 Porphyromonas gingivalis W83 2551793 NP_904756.1 CDS PG0458 NC_002950.2 500615 501553 R ISPg5, transposase Orf2 complement(500615..501553) Porphyromonas gingivalis W83 2551725 NP_904757.1 CDS PG0459 NC_002950.2 501607 501984 R ISPg5, transposase Orf1 complement(501607..501984) Porphyromonas gingivalis W83 2551807 NP_904758.1 CDS PG0460 NC_002950.2 502077 503162 D ISPg1, transposase 502077..503162 Porphyromonas gingivalis W83 2551820 NP_904759.1 CDS PG0461 NC_002950.2 503529 504836 R ISPg7, transposase complement(503529..504836) Porphyromonas gingivalis W83 2551991 NP_904760.1 CDS PG0462 NC_002950.2 504966 506369 R transporter complement(504966..506369) Porphyromonas gingivalis W83 2551811 NP_904761.1 CDS folC NC_002950.2 506407 507696 R folylpolyglutamate synthase complement(506407..507696) Porphyromonas gingivalis W83 2551392 NP_904762.1 CDS purA NC_002950.2 507693 508964 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(507693..508964) Porphyromonas gingivalis W83 2551835 NP_904763.1 CDS fur NC_002950.2 508993 509493 R ferric uptake transcriptional regulator complement(508993..509493) Porphyromonas gingivalis W83 2551442 NP_904764.1 CDS PG0466 NC_002950.2 509579 510334 R hypothetical protein complement(509579..510334) Porphyromonas gingivalis W83 2551654 NP_904765.1 CDS manA NC_002950.2 510464 511474 R identified by match to PFAM protein family HMM PF01238; mannose-6-phosphate isomerase complement(510464..511474) Porphyromonas gingivalis W83 2551842 NP_904766.1 CDS PG0469 NC_002950.2 511497 511748 R hypothetical protein complement(511497..511748) Porphyromonas gingivalis W83 2551858 NP_904767.1 CDS PG0470 NC_002950.2 511827 511973 R hypothetical protein complement(511827..511973) Porphyromonas gingivalis W83 2551974 NP_904768.1 CDS PG0471 NC_002950.2 512428 513492 D hypothetical protein 512428..513492 Porphyromonas gingivalis W83 2551432 NP_904769.1 CDS PG0472 NC_002950.2 513479 514474 D iron-sulfur cluster binding protein 513479..514474 Porphyromonas gingivalis W83 2551406 NP_904770.1 CDS PG0474 NC_002950.2 515101 516138 R similar to GB:L29636, SP:P38133, and PID:532251; identified by sequence similarity; putative; low-specificity L-threonine aldolase complement(515101..516138) Porphyromonas gingivalis W83 2551896 NP_904771.1 CDS PG0475 NC_002950.2 516178 517308 R oxygen-independent coproporphyrinogen III oxidase complement(516178..517308) Porphyromonas gingivalis W83 2552298 NP_904772.1 CDS yngK-2 NC_002950.2 517305 518852 R similar to SP:P34024, GB:X54618, GB:X60035, and PID:581304; identified by sequence similarity; putative; hypothetical protein complement(517305..518852) Porphyromonas gingivalis W83 2551564 NP_904773.1 CDS panC NC_002950.2 518842 519687 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(518842..519687) Porphyromonas gingivalis W83 2551844 NP_904774.1 CDS PG0479 NC_002950.2 519826 520605 D hypothetical protein 519826..520605 Porphyromonas gingivalis W83 2552242 NP_904775.1 CDS PG0480 NC_002950.2 520696 521409 R identified by match to TIGR protein family HMM TIGR01466; precorrin-2 C20-methyltransferase complement(520696..521409) Porphyromonas gingivalis W83 2552244 NP_904776.1 CDS kbl NC_002950.2 521522 522712 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate CoA ligase complement(521522..522712) Porphyromonas gingivalis W83 2552252 NP_904777.1 CDS PG0482 NC_002950.2 522788 523219 R hypothetical protein complement(522788..523219) Porphyromonas gingivalis W83 2552255 NP_904778.1 CDS PG0483 NC_002950.2 523326 523934 R kinase complement(523326..523934) Porphyromonas gingivalis W83 2552257 NP_904779.1 CDS PG0484 NC_002950.2 523941 524948 R hypothetical protein complement(523941..524948) Porphyromonas gingivalis W83 2552260 NP_904780.1 CDS yajC NC_002950.2 525076 525414 R preprotein translocase subunit YajC complement(525076..525414) Porphyromonas gingivalis W83 2552268 NP_904781.1 CDS ogt NC_002950.2 525497 526024 R identified by match to PFAM protein family HMM PF02870; methylated-DNA--protein-cysteine S-methyltransferase complement(525497..526024) Porphyromonas gingivalis W83 2552270 NP_904782.1 CDS PG0487 NC_002950.2 526366 527523 R ISPg4, transposase complement(526366..527523) Porphyromonas gingivalis W83 2552276 NP_904783.1 CDS ruvB NC_002950.2 528309 529340 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 528309..529340 Porphyromonas gingivalis W83 2552278 NP_904784.1 CDS PG0489 NC_002950.2 529387 530868 D identified by match to TIGR protein family HMM TIGR01695; polysaccharide biosynthesis-like protein 529387..530868 Porphyromonas gingivalis W83 2552283 NP_904785.1 CDS PG0490 NC_002950.2 530968 532308 D similar to GB:X78678, SP:P50053, PID:1743262, PID:1743264, PID:1845162, and PID:558351; identified by sequence similarity; putative; hypothetical protein 530968..532308 Porphyromonas gingivalis W83 2552286 NP_904786.1 CDS PG0491 NC_002950.2 532324 534462 D hypothetical protein 532324..534462 Porphyromonas gingivalis W83 2552289 NP_904787.1 CDS PG0492 NC_002950.2 534498 534758 R hypothetical protein complement(534498..534758) Porphyromonas gingivalis W83 2552290 NP_904788.1 CDS PG0493 NC_002950.2 534832 534990 R hypothetical protein complement(534832..534990) Porphyromonas gingivalis W83 2552226 NP_904789.1 CDS PG0494 NC_002950.2 535184 535456 R hypothetical protein complement(535184..535456) Porphyromonas gingivalis W83 2552302 NP_904790.1 CDS PG0495 NC_002950.2 535587 536996 D hypothetical protein 535587..536996 Porphyromonas gingivalis W83 2552305 NP_904791.1 CDS PG0496 NC_002950.2 537308 537400 D hypothetical protein 537308..537400 Porphyromonas gingivalis W83 2552301 NP_904792.1 CDS mtn NC_002950.2 537397 538083 D similar to GB:X70848, GB:J04759, GB:M63960, SP:P08129, SP:P36873, SP:P37140, PID:190281, PID:190516, PID:35451, PID:484316, PID:506772, and PID:531476; identified by sequence similarity; putative; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 537397..538083 Porphyromonas gingivalis W83 2552308 NP_904793.1 CDS luxS NC_002950.2 538108 538587 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 538108..538587 Porphyromonas gingivalis W83 2552279 NP_904794.1 CDS PG0499 NC_002950.2 538849 539202 D hypothetical protein 538849..539202 Porphyromonas gingivalis W83 2552311 NP_904795.1 CDS tgt NC_002950.2 539337 540467 D similar to GB:X68203, SP:P16057, SP:P35916, PID:1150991, PID:297050, and PID:388522; identified by sequence similarity; putative; queuine tRNA-ribosyltransferase 539337..540467 Porphyromonas gingivalis W83 2552316 NP_904796.1 CDS PG0501 NC_002950.2 540484 541566 D similar to GB:L23320, SP:P35251, PID:296908, PID:307338, and PID:410218; identified by sequence similarity; putative; hypothetical protein 540484..541566 Porphyromonas gingivalis W83 2552326 NP_904797.1 CDS smpB NC_002950.2 541599 542060 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 541599..542060 Porphyromonas gingivalis W83 2552299 NP_904798.1 CDS dpp NC_002950.2 542100 544271 D dipeptidyl aminopeptidase IV 542100..544271 Porphyromonas gingivalis W83 2552314 NP_904799.1 CDS lipA NC_002950.2 544374 545222 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 544374..545222 Porphyromonas gingivalis W83 2552284 NP_904800.1 CDS PG0505 NC_002950.2 545335 545457 D hypothetical protein 545335..545457 Porphyromonas gingivalis W83 2552231 NP_904801.1 CDS prtRII NC_002950.2 545475 547685 D similar to GB:M28829, and PID:551976; identified by sequence similarity; putative; arginine-specific cysteine proteinase 545475..547685 Porphyromonas gingivalis W83 2552233 NP_904802.1 CDS PG0507 NC_002950.2 548056 548250 D hypothetical protein 548056..548250 Porphyromonas gingivalis W83 2552238 NP_904803.1 CDS PG0508 NC_002950.2 548226 548828 R HAD family hydrolase complement(548226..548828) Porphyromonas gingivalis W83 2552324 NP_904804.1 CDS PG0509 NC_002950.2 548818 549678 R catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase complement(548818..549678) Porphyromonas gingivalis W83 2552304 NP_904805.1 CDS PG0510 NC_002950.2 549695 550150 R identified by match to PFAM protein family HMM PF02130; hypothetical protein complement(549695..550150) Porphyromonas gingivalis W83 2552296 NP_904806.1 CDS PG0511 NC_002950.2 550186 551418 R similar to SP:P35157, and SP:P35158; identified by sequence similarity; putative; spore maturation protein A/spore maturation protein B complement(550186..551418) Porphyromonas gingivalis W83 2552325 NP_904807.1 CDS gmk NC_002950.2 551438 552004 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(551438..552004) Porphyromonas gingivalis W83 2552249 NP_904808.1 CDS PG0513 NC_002950.2 552037 552927 R hypothetical protein complement(552037..552927) Porphyromonas gingivalis W83 2552237 NP_904809.2 CDS secA NC_002950.2 553019 556360 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(553019..556360) Porphyromonas gingivalis W83 2552320 NP_904810.1 CDS PG0515 NC_002950.2 556453 558048 R hypothetical protein complement(556453..558048) Porphyromonas gingivalis W83 2552300 NP_904811.1 CDS PG0516 NC_002950.2 558027 559274 R hypothetical protein complement(558027..559274) Porphyromonas gingivalis W83 2551479 NP_904812.1 CDS PG0517 NC_002950.2 559305 562187 R hypothetical protein complement(559305..562187) Porphyromonas gingivalis W83 2551487 NP_904813.1 CDS PG0518 NC_002950.2 562304 563029 R hypothetical protein complement(562304..563029) Porphyromonas gingivalis W83 2551478 NP_904814.1 CDS PG0519 NC_002950.2 563029 563139 D hypothetical protein 563029..563139 Porphyromonas gingivalis W83 2551473 NP_904815.1 CDS groEL NC_002950.2 563708 565345 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(563708..565345) Porphyromonas gingivalis W83 2551465 NP_904816.1 CDS groES NC_002950.2 565598 565867 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(565598..565867) Porphyromonas gingivalis W83 2551481 NP_904817.1 CDS miaA NC_002950.2 566083 566991 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(566083..566991) Porphyromonas gingivalis W83 2551438 NP_904818.1 CDS guaB NC_002950.2 566988 568484 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase complement(566988..568484) Porphyromonas gingivalis W83 2551469 NP_904819.1 CDS PG0524 NC_002950.2 568739 569023 D hypothetical protein 568739..569023 Porphyromonas gingivalis W83 2552353 NP_904820.1 CDS pyrG NC_002950.2 569139 570758 D CTP synthase; CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 569139..570758 Porphyromonas gingivalis W83 2552352 NP_904821.1 CDS PG0526 NC_002950.2 570886 572769 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 570886..572769 Porphyromonas gingivalis W83 2552356 NP_904822.1 CDS PG0528 NC_002950.2 572860 574743 D similar to GB:J05068, SP:P20061, and PID:307479; identified by sequence similarity; putative; amidophosphoribosyltransferase 572860..574743 Porphyromonas gingivalis W83 2551691 NP_904823.1 CDS carA NC_002950.2 574777 575850 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 574777..575850 Porphyromonas gingivalis W83 2552389 NP_904824.1 CDS carB NC_002950.2 575869 579096 D similar to GB:M34462, GB:M35670, GB:M36805, GB:X65787, GB:Y00809, GB:Z26248, SP:P13727, PID:182080, PID:187415, PID:306839, PID:31137, PID:312045, PID:34476, and PID:400414; identified by sequence similarity; putative; carbamoyl-phosphate synthase large subunit 575869..579096 Porphyromonas gingivalis W83 2552392 NP_904825.1 CDS nadE NC_002950.2 579286 581229 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(579286..581229) Porphyromonas gingivalis W83 2552377 NP_904826.1 CDS PG0532 NC_002950.2 581339 582238 R hypothetical protein complement(581339..582238) Porphyromonas gingivalis W83 2552348 NP_904827.1 CDS PG0534 NC_002950.2 583382 585865 D hypothetical protein 583382..585865 Porphyromonas gingivalis W83 2552359 NP_904828.1 CDS PG0535 NC_002950.2 586046 586666 R similar to GB:M24141, SP:P14924, and PID:155614; identified by sequence similarity; putative; hypothetical protein complement(586046..586666) Porphyromonas gingivalis W83 2552362 NP_904829.1 CDS PG0536 NC_002950.2 586680 586985 D hypothetical protein 586680..586985 Porphyromonas gingivalis W83 2552364 NP_904830.1 CDS pepD-2 NC_002950.2 586994 588454 D aminoacyl-histidine dipeptidase 586994..588454 Porphyromonas gingivalis W83 2552341 NP_904831.1 CDS PG0538 NC_002950.2 589282 590670 D previously submitted to Genbank by Ross, et al as immunoreactive 52 kDa antigen PG41; outer membrane efflux protein 589282..590670 Porphyromonas gingivalis W83 2552343 NP_904832.1 CDS PG0539 NC_002950.2 590714 591766 D RND family efflux transporter MFP subunit 590714..591766 Porphyromonas gingivalis W83 2552345 NP_904833.1 CDS PG0540 NC_002950.2 591763 594912 D AcrB/AcrD/AcrF family protein 591763..594912 Porphyromonas gingivalis W83 2552336 NP_904834.1 CDS PG0541 NC_002950.2 594897 595196 D hypothetical protein 594897..595196 Porphyromonas gingivalis W83 2552339 NP_904835.1 CDS PG0542 NC_002950.2 595467 595772 R hypothetical protein complement(595467..595772) Porphyromonas gingivalis W83 2552381 NP_904836.1 CDS PG0543 NC_002950.2 595797 596000 D identified by match to PFAM protein family HMM PF01381; transcriptional regulator 595797..596000 Porphyromonas gingivalis W83 2552387 NP_904837.1 CDS PG0544 NC_002950.2 596192 598138 D type I restriction-modification system, M subunit 596192..598138 Porphyromonas gingivalis W83 2552386 NP_904838.1 CDS PG0545 NC_002950.2 598183 600288 D hypothetical protein 598183..600288 Porphyromonas gingivalis W83 2552328 NP_904839.1 CDS PG0546 NC_002950.2 600269 600481 R hypothetical protein complement(600269..600481) Porphyromonas gingivalis W83 2552331 NP_904840.1 CDS PG0547 NC_002950.2 600853 602049 D hypothetical protein 600853..602049 Porphyromonas gingivalis W83 2552332 NP_904841.1 CDS PG0548 NC_002950.2 602238 605819 D pyruvate ferredoxin/flavodoxin oxidoreductase 602238..605819 Porphyromonas gingivalis W83 2552335 NP_904842.1 CDS PG0549 NC_002950.2 606077 607162 R ISPg1, transposase complement(606077..607162) Porphyromonas gingivalis W83 2552371 NP_904843.1 CDS PG0553 NC_002950.2 608457 611279 R similar to GB:M63420, GB:J03261, SP:P15018, PID:178415, PID:187141, PID:34362, and PID:575489; identified by sequence similarity; putative; extracellular protease complement(608457..611279) Porphyromonas gingivalis W83 2552375 NP_904844.1 CDS PG0554 NC_002950.2 611605 611721 D hypothetical protein 611605..611721 Porphyromonas gingivalis W83 2551382 NP_904845.1 CDS PG0555 NC_002950.2 611806 612324 R histone-like family DNA-binding protein complement(611806..612324) Porphyromonas gingivalis W83 2551420 NP_904846.1 CDS PG0556 NC_002950.2 613418 614320 D hypothetical protein 613418..614320 Porphyromonas gingivalis W83 2551433 NP_904847.1 CDS PG0557 NC_002950.2 614375 615067 D hypothetical protein 614375..615067 Porphyromonas gingivalis W83 2551480 NP_904848.1 CDS PG0558 NC_002950.2 615600 616421 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(615600..616421) Porphyromonas gingivalis W83 2551484 NP_904849.1 CDS PG0559 NC_002950.2 616441 617586 R chlorohydrolase complement(616441..617586) Porphyromonas gingivalis W83 2551462 NP_904850.1 CDS PG0560 NC_002950.2 617563 617808 D hypothetical protein 617563..617808 Porphyromonas gingivalis W83 2551373 NP_904851.1 CDS PG0561 NC_002950.2 617790 619145 R similar to GB:M96364, PID:1033197, PID:144480, and SP:Q59335; identified by sequence similarity; putative; M20/M25/M40 family peptidase complement(617790..619145) Porphyromonas gingivalis W83 2551421 NP_904852.1 CDS PG0562 NC_002950.2 619362 621038 D similar to GB:J04046, GB:X52606, GB:X52607, GB:X52608, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M19311, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M27319, GB:U11886, GB:U12022, GB:U16851, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, and PID:825635; identified by sequence similarity; putative; hypothetical protein 619362..621038 Porphyromonas gingivalis W83 2551452 NP_904853.1 CDS PG0563 NC_002950.2 621025 621528 R hypothetical protein complement(621025..621528) Porphyromonas gingivalis W83 2552417 NP_904854.1 CDS PG0564 NC_002950.2 621506 621700 R hypothetical protein complement(621506..621700) Porphyromonas gingivalis W83 2552415 NP_904855.1 CDS PG0565 NC_002950.2 621861 622733 R hypothetical protein complement(621861..622733) Porphyromonas gingivalis W83 2552478 NP_904856.1 CDS PG0566 NC_002950.2 623025 623531 R identified by match to PFAM protein family HMM PF00216; histone-like family DNA-binding protein complement(623025..623531) Porphyromonas gingivalis W83 2552482 NP_904857.1 CDS efp-1 NC_002950.2 624089 624655 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(624089..624655) Porphyromonas gingivalis W83 2552437 NP_904858.1 CDS PG0569 NC_002950.2 624787 626313 R hypothetical protein complement(624787..626313) Porphyromonas gingivalis W83 2552435 NP_904859.1 CDS asd NC_002950.2 626539 627552 D similar to GB:M87049, SP:P06983, GB:X04242, GB:X12614, PID:148204, PID:41186, PID:41664, PID:41666, GB:U00096, PID:2367293, GB:X53331, GB:X07362, GB:M55270, GB:M58549, SP:P08493, PID:187591, PID:187593, PID:34614, and PID:34618; identified by sequence similarity; putative; aspartate-semialdehyde dehydrogenase 626539..627552 Porphyromonas gingivalis W83 2552421 NP_904860.1 CDS PG0572 NC_002950.2 627524 627661 R hypothetical protein complement(627524..627661) Porphyromonas gingivalis W83 2552414 NP_904861.1 CDS mraW NC_002950.2 628223 629158 D S-adenosyl-methyltransferase MraW 628223..629158 Porphyromonas gingivalis W83 2552422 NP_904862.1 CDS PG0574 NC_002950.2 629158 629631 D hypothetical protein 629158..629631 Porphyromonas gingivalis W83 2552424 NP_904863.1 CDS PG0575 NC_002950.2 629641 631842 D penicillin-binding protein 2 629641..631842 Porphyromonas gingivalis W83 2552419 NP_904864.1 CDS murE NC_002950.2 631859 633322 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 631859..633322 Porphyromonas gingivalis W83 2552459 NP_904865.1 CDS mraY NC_002950.2 633337 634596 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 633337..634596 Porphyromonas gingivalis W83 2552457 NP_904866.1 CDS murD NC_002950.2 634620 635972 D UDP-N-acetylmuramoylalanine--D-glutamate ligase 634620..635972 Porphyromonas gingivalis W83 2552460 NP_904867.1 CDS PG0579 NC_002950.2 635984 637240 D similar to GB:M27504, GB:Z15111, GB:S56813, GB:X68060, GB:Z15115, GB:D17023, SP:Q02880, PID:1354507, PID:2088635, PID:288565, PID:288567, PID:339810, PID:37231, and PID:38325; identified by sequence similarity; putative; cell division protein FtsW 635984..637240 Porphyromonas gingivalis W83 2552454 NP_904868.1 CDS murG NC_002950.2 637237 638376 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 637237..638376 Porphyromonas gingivalis W83 2552407 NP_904869.1 CDS murC NC_002950.2 638376 639746 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 638376..639746 Porphyromonas gingivalis W83 2552423 NP_904870.1 CDS PG0582 NC_002950.2 639740 640516 D similar to GB:M60722, SP:P23256, PID:146693, GB:U00096, PID:1742676, PID:1742684, PID:1742716, and PID:1787909; identified by sequence similarity; putative; cell division protein FtsQ 639740..640516 Porphyromonas gingivalis W83 2552404 NP_904871.1 CDS ftsA NC_002950.2 640565 642004 D similar to GB:M60722, SP:P23256, PID:146693, GB:U00096, PID:1742676, PID:1742684, PID:1742716, and PID:1787909; identified by sequence similarity; putative; cell division protein FtsA 640565..642004 Porphyromonas gingivalis W83 2552410 NP_904872.1 CDS ftsz NC_002950.2 642007 643380 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 642007..643380 Porphyromonas gingivalis W83 2552441 NP_904873.1 CDS PG0585 NC_002950.2 643412 643861 D similar to GB:M31903, SP:P16218, and PID:144774; identified by sequence similarity; putative; hypothetical protein 643412..643861 Porphyromonas gingivalis W83 2552463 NP_904874.1 CDS yadS NC_002950.2 644702 645334 R similar to GB:J04974, GB:U32169, GB:L18987, SP:P13942, PID:1000745, PID:1000747, PID:1724042, and PID:180715; identified by sequence similarity; putative; yadS protein complement(644702..645334) Porphyromonas gingivalis W83 2552427 NP_904875.1 CDS panB NC_002950.2 645386 646207 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(645386..646207) Porphyromonas gingivalis W83 2552406 NP_904876.1 CDS guaA NC_002950.2 646278 647798 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(646278..647798) Porphyromonas gingivalis W83 2552440 NP_904877.1 CDS PG0590 NC_002950.2 648175 648570 D ISPg5, transposase Orf1 648175..648570 Porphyromonas gingivalis W83 2552431 NP_904878.1 CDS PG0591 NC_002950.2 648624 649562 D ISPg5, transposase Orf2 648624..649562 Porphyromonas gingivalis W83 2552428 NP_904879.1 CDS rpmE2 NC_002950.2 650028 650285 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 650028..650285 Porphyromonas gingivalis W83 2552481 NP_904880.1 CDS htrA NC_002950.2 650502 651998 D similar to GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, PID:180195, GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, PID:180195, GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, PID:180195, GB:D90452, GB:D90453, GB:M64110, GB:M83216, SP:Q05682, and PID:180195; identified by sequence similarity; putative; htrA protein 650502..651998 Porphyromonas gingivalis W83 2552451 NP_904881.1 CDS rpoD NC_002950.2 652188 653051 D similar to GB:Z19055, SP:P42394, PID:396660, GB:Z19055, SP:P42394, and PID:396660; identified by sequence similarity; putative; RNA polymerase sigma-70 factor 652188..653051 Porphyromonas gingivalis W83 2552433 NP_904882.1 CDS rpsF NC_002950.2 653148 653501 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 653148..653501 Porphyromonas gingivalis W83 2552425 NP_904883.1 CDS rpsR NC_002950.2 653505 653777 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 653505..653777 Porphyromonas gingivalis W83 2552432 NP_904884.1 CDS rplI NC_002950.2 653802 654341 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 653802..654341 Porphyromonas gingivalis W83 2552420 NP_904885.1 CDS PG0598 NC_002950.2 654617 656572 D hypothetical protein 654617..656572 Porphyromonas gingivalis W83 2552475 NP_904886.1 CDS ribBA NC_002950.2 656575 657792 D similar to GB:M89481, SP:P37409, and PID:153891; identified by sequence similarity; putative; 3,4-dihydroxy-2-butanone 4-phosphate synthase 656575..657792 Porphyromonas gingivalis W83 2552480 NP_904887.1 CDS PG0602 NC_002950.2 658640 659680 D hypothetical protein 658640..659680 Porphyromonas gingivalis W83 2552469 NP_904888.1 CDS cmk NC_002950.2 659710 660405 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 659710..660405 Porphyromonas gingivalis W83 2552444 NP_904889.1 CDS ispH NC_002950.2 660402 661271 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 660402..661271 Porphyromonas gingivalis W83 2552442 NP_904890.1 CDS PG0605 NC_002950.2 661255 662496 R hypothetical protein complement(661255..662496) Porphyromonas gingivalis W83 2552456 NP_904891.1 CDS PG0606 NC_002950.2 662541 662648 R hypothetical protein complement(662541..662648) Porphyromonas gingivalis W83 2552447 NP_904892.1 CDS PG0607 NC_002950.2 662692 663054 D hypothetical protein 662692..663054 Porphyromonas gingivalis W83 2552465 NP_904893.1 CDS PG0608 NC_002950.2 663085 663219 D hypothetical protein 663085..663219 Porphyromonas gingivalis W83 2552470 NP_904894.1 CDS PG0609 NC_002950.2 663323 663415 D hypothetical protein 663323..663415 Porphyromonas gingivalis W83 2552471 NP_904895.1 CDS PG0610 NC_002950.2 663694 664113 R hypothetical protein complement(663694..664113) Porphyromonas gingivalis W83 2551372 NP_904896.1 CDS PG0611 NC_002950.2 664152 665102 D putative lipoprotein 664152..665102 Porphyromonas gingivalis W83 2552526 NP_904897.1 CDS PG0612 NC_002950.2 665099 665302 D hypothetical protein 665099..665302 Porphyromonas gingivalis W83 2552486 NP_904898.1 CDS PG0613 NC_002950.2 665326 666015 D hypothetical protein 665326..666015 Porphyromonas gingivalis W83 2552493 NP_904899.1 CDS PG0614 NC_002950.2 665987 666967 D hypothetical protein 665987..666967 Porphyromonas gingivalis W83 2552504 NP_904900.1 CDS typA NC_002950.2 667173 668972 D similar to SP:Q05489, PID:49206, PID:640960, and PID:1247764; identified by sequence similarity; putative; GTP-binding protein TypA 667173..668972 Porphyromonas gingivalis W83 2552506 NP_904901.1 CDS PG0616 NC_002950.2 669075 670109 D thioredoxin 669075..670109 Porphyromonas gingivalis W83 2552508 NP_904902.1 CDS PG0617 NC_002950.2 670199 670498 D hypothetical protein 670199..670498 Porphyromonas gingivalis W83 2552510 NP_904903.1 CDS PG0618 NC_002950.2 670512 671078 D identified by match to PFAM protein family HMM PF00578; alkyl hydroperoxide reductase 670512..671078 Porphyromonas gingivalis W83 2552494 NP_904904.1 CDS PG0619 NC_002950.2 671244 672791 D identified by match to TIGR protein family HMM TIGR01698; alkyl hydroperoxide reductase 671244..672791 Porphyromonas gingivalis W83 2552498 NP_904905.1 CDS lon NC_002950.2 673103 675535 D ATP-dependent protease La 673103..675535 Porphyromonas gingivalis W83 2552515 NP_904906.1 CDS PG0621 NC_002950.2 675532 676080 D hypothetical protein 675532..676080 Porphyromonas gingivalis W83 2552500 NP_904907.1 CDS PG0622 NC_002950.2 676077 677369 D hypothetical protein 676077..677369 Porphyromonas gingivalis W83 2552491 NP_904908.1 CDS tpiA NC_002950.2 677401 678156 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 677401..678156 Porphyromonas gingivalis W83 2552517 NP_904909.1 CDS PG0624 NC_002950.2 678218 678724 D identified by match to PFAM protein family HMM PF05036; hypothetical protein 678218..678724 Porphyromonas gingivalis W83 2552501 NP_904910.1 CDS folE NC_002950.2 678728 679309 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 678728..679309 Porphyromonas gingivalis W83 2552519 NP_904911.1 CDS PG0626 NC_002950.2 679540 680406 D hypothetical protein 679540..680406 Porphyromonas gingivalis W83 2552520 NP_904912.1 CDS PG0627 NC_002950.2 681232 681525 R similar to GB:D10483, SP:P05636, GB:X04711, PID:216475, PID:40918, GB:U00096, and PID:1786235; identified by sequence similarity; putative; RNA-binding protein complement(681232..681525) Porphyromonas gingivalis W83 2552523 NP_904913.1 CDS PG0628 NC_002950.2 681774 682529 R similar to GB:M63007, SP:P27345, and PID:142306; identified by sequence similarity; putative; ABC transporter ATP-binding protein complement(681774..682529) Porphyromonas gingivalis W83 2552521 NP_904914.1 CDS ppnK NC_002950.2 682588 683454 R catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase complement(682588..683454) Porphyromonas gingivalis W83 2552505 NP_904915.1 CDS pdxJ NC_002950.2 683532 684248 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 683532..684248 Porphyromonas gingivalis W83 2552514 NP_904916.1 CDS PG0631 NC_002950.2 684406 685020 D MotA/TolQ/ExbB proton channel family protein 684406..685020 Porphyromonas gingivalis W83 2552532 NP_904917.1 CDS PG0632 NC_002950.2 685017 685436 D identified by match to PFAM protein family HMM PF02472; biopolymer transport protein ExbD 685017..685436 Porphyromonas gingivalis W83 2552533 NP_904918.1 CDS PG0633 NC_002950.2 685441 686268 D hypothetical protein 685441..686268 Porphyromonas gingivalis W83 2552487 NP_904919.1 CDS PG0634 NC_002950.2 686283 686828 D ThiJ/PfpI family protein 686283..686828 Porphyromonas gingivalis W83 2552527 NP_904920.1 CDS prmA NC_002950.2 686928 687863 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(686928..687863) Porphyromonas gingivalis W83 2552528 NP_904921.1 CDS PG0636 NC_002950.2 687797 689161 R identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein complement(687797..689161) Porphyromonas gingivalis W83 2551525 NP_904922.1 CDS thiL NC_002950.2 689154 690194 R similar to SP:P14071; identified by sequence similarity; putative; thiamine monophosphate kinase complement(689154..690194) Porphyromonas gingivalis W83 2552561 NP_904923.1 CDS lpxK NC_002950.2 690200 691273 R similar to GB:X68277, SP:P28562, and PID:29981; identified by sequence similarity; putative; tetraacyldisaccharide 4'-kinase complement(690200..691273) Porphyromonas gingivalis W83 2552577 NP_904924.1 CDS sppA NC_002950.2 691303 693090 R similar to GB:X07743, SP:P08567, and PID:35518; identified by sequence similarity; putative; signal peptide peptidase SppA, 67K type complement(691303..693090) Porphyromonas gingivalis W83 2552578 NP_904925.1 CDS PG0645 NC_002950.2 696973 698049 R similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; hypothetical protein complement(696973..698049) Porphyromonas gingivalis W83 2552541 NP_904926.1 CDS PG0646 NC_002950.2 698160 699161 R similar to GB:L23560, SP:P01743, SP:P23083, PID:499592, PID:509804, PID:553397, PID:553411, PID:553471, PID:560840, PID:567116, PID:619770, PID:619775, and PID:860978; identified by sequence similarity; putative; iron ABC transporter ATP-binding protein complement(698160..699161) Porphyromonas gingivalis W83 2552539 NP_904927.1 CDS PG0647 NC_002950.2 699169 700203 R similar to SP:P06975, GB:X02589, PID:41515, GB:U00096, PID:1651290, PID:1651295, and PID:1786899; identified by sequence similarity; putative; iron ABC transporter permease complement(699169..700203) Porphyromonas gingivalis W83 2552550 NP_904928.1 CDS PG0648 NC_002950.2 700200 701375 R iron ABC transporter substrate-binding protein complement(700200..701375) Porphyromonas gingivalis W83 2552557 NP_904929.1 CDS PG0649 NC_002950.2 701960 702544 D identified by match to PFAM protein family HMM PF03692; hypothetical protein 701960..702544 Porphyromonas gingivalis W83 2552546 NP_904930.1 CDS PG0650 NC_002950.2 702671 703054 R hypothetical protein complement(702671..703054) Porphyromonas gingivalis W83 2552549 NP_904931.1 CDS PG0651 NC_002950.2 703161 703712 R similar to SP:P21862, GB:X54049, PID:43108, PID:882566, GB:U00096, and PID:1789414; identified by sequence similarity; putative; HDIG domain-containing protein complement(703161..703712) Porphyromonas gingivalis W83 2552571 NP_904932.1 CDS PG0652 NC_002950.2 703989 704291 R similar to GP:4582460, and GP:19714389; identified by sequence similarity; putative; hypothetical protein complement(703989..704291) Porphyromonas gingivalis W83 2552563 NP_904933.1 CDS serB NC_002950.2 704303 705544 R phosphoserine phosphatase complement(704303..705544) Porphyromonas gingivalis W83 2552569 NP_904934.1 CDS PG0654 NC_002950.2 705603 706775 R hypothetical protein complement(705603..706775) Porphyromonas gingivalis W83 2552551 NP_904935.1 CDS PG0655 NC_002950.2 706852 706947 D hypothetical protein 706852..706947 Porphyromonas gingivalis W83 2552562 NP_904936.1 CDS rpmH NC_002950.2 707035 707187 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(707035..707187) Porphyromonas gingivalis W83 2552567 NP_904937.1 CDS maf NC_002950.2 707249 707872 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(707249..707872) Porphyromonas gingivalis W83 2552588 NP_904938.1 CDS PG0658 NC_002950.2 707888 708409 R identified by match to TIGR protein family HMM TIGR01681; YrbI family phosphatase complement(707888..708409) Porphyromonas gingivalis W83 2552590 NP_904939.1 CDS PG0659 NC_002950.2 708426 709238 R similar to GB:L29436, and PID:459904; identified by sequence similarity; putative; hypothetical protein complement(708426..709238) Porphyromonas gingivalis W83 2552594 NP_904940.1 CDS PG0660 NC_002950.2 709231 709785 R nitroreductase complement(709231..709785) Porphyromonas gingivalis W83 2552595 NP_904941.1 CDS PG0661 NC_002950.2 709782 709943 R hypothetical protein complement(709782..709943) Porphyromonas gingivalis W83 2552596 NP_904942.1 CDS PG0662 NC_002950.2 710007 710216 D hypothetical protein 710007..710216 Porphyromonas gingivalis W83 2552591 NP_904943.1 CDS PG0664 NC_002950.2 710433 711920 D Gfo/Idh/MocA family oxidoreductase 710433..711920 Porphyromonas gingivalis W83 2552598 NP_904944.1 CDS lacZ-1 NC_002950.2 711967 715305 D beta-galactosidase 711967..715305 Porphyromonas gingivalis W83 2552603 NP_904945.1 CDS PG0668 NC_002950.2 717591 719864 D TonB-dependent receptor 717591..719864 Porphyromonas gingivalis W83 2552608 NP_904946.1 CDS fetB NC_002950.2 719893 720774 D heme-binding protein FetB 719893..720774 Porphyromonas gingivalis W83 2552613 NP_904947.1 CDS PG0670 NC_002950.2 720892 722031 D similar to GB:Z14955, GB:Z14954, GB:Z29574, GB:Z29575, SP:Q02223, PID:1930146, PID:29408, PID:33807, PID:471245, and PID:499189; identified by sequence similarity; putative; putative lipoprotein 720892..722031 Porphyromonas gingivalis W83 2552614 NP_904948.1 CDS PG0671 NC_002950.2 722028 723098 D iron ABC transporter permease 722028..723098 Porphyromonas gingivalis W83 2552619 NP_904949.1 CDS PG0672 NC_002950.2 723142 723900 D similar to GB:L23560, SP:P01743, SP:P23083, PID:499592, PID:509804, PID:553397, PID:553411, PID:553471, PID:560840, PID:567116, PID:619770, PID:619775, and PID:860978; identified by sequence similarity; putative; iron ABC transporter ATP-binding protein 723142..723900 Porphyromonas gingivalis W83 2552620 NP_904950.1 CDS iorB NC_002950.2 724299 724892 R Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta complement(724299..724892) Porphyromonas gingivalis W83 2551495 NP_904951.1 CDS iorA NC_002950.2 724919 726526 R similar to SP:P09192, GB:L36958, PID:1161271, PID:558141, PID:1001364, SP:P09192, GB:L36958, PID:1161271, PID:558141, and PID:1001364; identified by sequence similarity; putative; indolepyruvate ferredoxin oxidoreductase subunit alpha complement(724919..726526) Porphyromonas gingivalis W83 2551499 NP_904952.1 CDS PG0676 NC_002950.2 726604 727365 R short chain dehydrogenase/reductase oxidoreductase complement(726604..727365) Porphyromonas gingivalis W83 2552627 NP_904953.1 CDS LYS1 NC_002950.2 727793 728986 D similar to GB:M22488, GB:L35279, GB:L35278, SP:P13497, and PID:619424; identified by sequence similarity; putative; saccharopine dehydrogenase 727793..728986 Porphyromonas gingivalis W83 2552642 NP_904954.1 CDS PG0678 NC_002950.2 729019 729531 D similar to GB:X67514, and PID:433461; identified by sequence similarity; putative; pyrazinamidase/nicotinamidase 729019..729531 Porphyromonas gingivalis W83 2552629 NP_904955.1 CDS PG0679 NC_002950.2 729734 731068 D previously submitted to Genbank by Ross, et al as immunoreactive 50kD antigen PG53; outer membrane efflux protein 729734..731068 Porphyromonas gingivalis W83 2552639 NP_904956.1 CDS PG0680 NC_002950.2 731108 732361 D RND family efflux transporter MFP subunit 731108..732361 Porphyromonas gingivalis W83 2552640 NP_904957.1 CDS PG0681 NC_002950.2 732501 732809 R hypothetical protein complement(732501..732809) Porphyromonas gingivalis W83 2552644 NP_904958.1 CDS PG0682 NC_002950.2 733011 735362 D ABC transporter permease 733011..735362 Porphyromonas gingivalis W83 2552632 NP_904959.1 CDS PG0683 NC_002950.2 735395 737761 D ABC transporter permease 735395..737761 Porphyromonas gingivalis W83 2552634 NP_904960.1 CDS PG0684 NC_002950.2 737788 740163 D ABC transporter permease 737788..740163 Porphyromonas gingivalis W83 2552638 NP_904961.1 CDS PG0685 NC_002950.2 740256 740915 D ABC transporter ATP-binding protein 740256..740915 Porphyromonas gingivalis W83 2552631 NP_904962.1 CDS PG0686 NC_002950.2 741221 742774 R hypothetical protein complement(741221..742774) Porphyromonas gingivalis W83 2552626 NP_904963.1 CDS sucD NC_002950.2 743258 744613 R similar to GB:Z18284, GB:L26494, SP:P20264, SP:Q03052, PID:35134, PID:508990, GB:Z18284, GB:L26494, SP:P20264, SP:Q03052, PID:35134, and PID:508990; identified by sequence similarity; putative; succinate-semialdehyde dehydrogenase complement(743258..744613) Porphyromonas gingivalis W83 2551522 NP_904964.1 CDS 4hbD NC_002950.2 744808 745923 R similar to GB:D11144, GB:D11145, GB:D11146, GB:D11147, GB:D11148, GB:D11149, GB:D11150, GB:D11151, GB:L06622, GB:S45956, GB:S81539, SP:P25101, PID:181957, PID:219630, PID:219650, and PID:288313; identified by sequence similarity; putative; NAD-dependent 4-hydroxybutyrate dehydrogenase complement(744808..745923) Porphyromonas gingivalis W83 2552693 NP_904965.1 CDS abfT-1 NC_002950.2 745974 747269 R 4-hydroxybutyrate CoA-transferase complement(745974..747269) Porphyromonas gingivalis W83 2552694 NP_904966.1 CDS PG0691 NC_002950.2 747275 747559 R identified by match to PFAM protein family HMM PF01106; NifU-like protein complement(747275..747559) Porphyromonas gingivalis W83 2552650 NP_904967.1 CDS abfD NC_002950.2 747632 749092 R 4-hydroxybutyryl-CoA dehydratase complement(747632..749092) Porphyromonas gingivalis W83 2552648 NP_904968.1 CDS PG0694 NC_002950.2 749793 750935 R hypothetical protein complement(749793..750935) Porphyromonas gingivalis W83 2552690 NP_904969.1 CDS PG0695 NC_002950.2 750982 752157 R hypothetical protein complement(750982..752157) Porphyromonas gingivalis W83 2552740 NP_904970.1 CDS PG0698 NC_002950.2 752463 753446 R putative lipoprotein complement(752463..753446) Porphyromonas gingivalis W83 2552741 NP_904971.1 CDS malP NC_002950.2 753478 756048 R maltodextrin phosphorylase complement(753478..756048) Porphyromonas gingivalis W83 2552725 NP_904972.1 CDS PG0700 NC_002950.2 756173 756685 R hypothetical protein complement(756173..756685) Porphyromonas gingivalis W83 2552728 NP_904973.1 CDS cobU NC_002950.2 756651 757187 D similar to GB:U05040, and PID:460152; identified by sequence similarity; putative; cobinamide kinase/cobinamide phosphate guanylyltransferase 756651..757187 Porphyromonas gingivalis W83 2552671 NP_904974.1 CDS PG0702 NC_002950.2 757240 758277 D nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 757240..758277 Porphyromonas gingivalis W83 2552673 NP_904975.1 CDS PG0703 NC_002950.2 758284 759066 D cobalamin (5'-phosphate) synthase 758284..759066 Porphyromonas gingivalis W83 2552672 NP_904976.1 CDS PG0704 NC_002950.2 759068 759607 D similar to GB:M64120, SP:P28030, and PID:155295; identified by sequence similarity; putative; phosphoglycerate mutase 759068..759607 Porphyromonas gingivalis W83 2552675 NP_904977.1 CDS murI NC_002950.2 759669 760493 D identified by match to TIGR protein family HMM TIGR00035; glutamate racemase 759669..760493 Porphyromonas gingivalis W83 2552652 NP_904978.1 CDS PG0706 NC_002950.2 760490 760942 D identified by match to PFAM protein family HMM PF03724; hypothetical protein 760490..760942 Porphyromonas gingivalis W83 2552681 NP_904979.1 CDS PG0707 NC_002950.2 761176 763722 R TonB-dependent receptor complement(761176..763722) Porphyromonas gingivalis W83 2552729 NP_904980.1 CDS PG0708 NC_002950.2 763888 764718 R FKBP-type peptidylprolyl isomerase complement(763888..764718) Porphyromonas gingivalis W83 2552732 NP_904981.1 CDS fkpA NC_002950.2 764746 765507 R similar to GB:Y00281, SP:P04843, and PID:36053; identified by sequence similarity; putative; peptidyl-prolyl cis-trans isomerase FkpA complement(764746..765507) Porphyromonas gingivalis W83 2552730 NP_904982.1 CDS PG0710 NC_002950.2 765537 766124 R identified by match to PFAM protein family HMM PF01346; FKBP-type peptidylprolyl isomerase complement(765537..766124) Porphyromonas gingivalis W83 2552733 NP_904983.1 CDS PG0711 NC_002950.2 766210 766341 D hypothetical protein 766210..766341 Porphyromonas gingivalis W83 2552735 NP_904984.1 CDS PG0712 NC_002950.2 766874 767221 R hypothetical protein complement(766874..767221) Porphyromonas gingivalis W83 2552687 NP_904985.1 CDS trpG NC_002950.2 767243 767839 R similar to GB:N00031, GB:L00354, GB:N00050, SP:P06307, and PID:179996; identified by sequence similarity; putative; anthranilate synthase component II complement(767243..767839) Porphyromonas gingivalis W83 2552708 NP_904986.1 CDS cutC NC_002950.2 768015 768761 R identified by match to PFAM protein family HMM PF03932; copper homeostasis protein CutC complement(768015..768761) Porphyromonas gingivalis W83 2552697 NP_904987.1 CDS PG0715 NC_002950.2 768766 769686 R similar to GB:L19084, SP:P33668, PID:304942, GB:U00096, PID:1773180, and PID:1786707; identified by sequence similarity; putative; transporter complement(768766..769686) Porphyromonas gingivalis W83 2552700 NP_904988.1 CDS PG0717 NC_002950.2 770081 771184 R putative lipoprotein complement(770081..771184) Porphyromonas gingivalis W83 2552683 NP_904989.1 CDS PG0718 NC_002950.2 771226 771663 R hypothetical protein complement(771226..771663) Porphyromonas gingivalis W83 2552668 NP_904990.1 CDS PG0719 NC_002950.2 771786 773069 R sensor histidine kinase complement(771786..773069) Porphyromonas gingivalis W83 2552684 NP_904991.1 CDS PG0720 NC_002950.2 773066 773755 R DNA-binding response regulator complement(773066..773755) Porphyromonas gingivalis W83 2552674 NP_904992.1 CDS PG0721 NC_002950.2 773987 774595 D similar to GB:D26166, and PID:442483; identified by sequence similarity; putative; NLP/P60 family protein 773987..774595 Porphyromonas gingivalis W83 2552720 NP_904993.1 CDS PG0722 NC_002950.2 774829 774981 R hypothetical protein complement(774829..774981) Porphyromonas gingivalis W83 2552649 NP_904994.1 CDS PG0723 NC_002950.2 775089 775415 D hypothetical protein 775089..775415 Porphyromonas gingivalis W83 2552676 NP_904995.1 CDS PG0724 NC_002950.2 775369 777315 D prolyl oligopeptidase 775369..777315 Porphyromonas gingivalis W83 2552678 NP_904996.1 CDS PG0725 NC_002950.2 777400 778026 D similar to GB:X54057, and PID:48509; identified by sequence similarity; putative; HAD superfamily hydrolase 777400..778026 Porphyromonas gingivalis W83 2552679 NP_904997.1 CDS PG0726 NC_002950.2 778093 778482 R putative lipoprotein complement(778093..778482) Porphyromonas gingivalis W83 2552680 NP_904998.1 CDS PG0727 NC_002950.2 778479 778685 R hypothetical protein complement(778479..778685) Porphyromonas gingivalis W83 2552665 NP_904999.1 CDS PG0728 NC_002950.2 778731 779897 R hypothetical protein complement(778731..779897) Porphyromonas gingivalis W83 2552710 NP_905000.1 CDS ddl NC_002950.2 779916 780908 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A complement(779916..780908) Porphyromonas gingivalis W83 2552707 NP_905001.1 CDS PG0731 NC_002950.2 782110 782766 R hypothetical protein complement(782110..782766) Porphyromonas gingivalis W83 2552701 NP_905002.1 CDS PG0732 NC_002950.2 782761 783078 D hypothetical protein 782761..783078 Porphyromonas gingivalis W83 2552703 NP_905003.1 CDS ribE NC_002950.2 783314 783916 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 783314..783916 Porphyromonas gingivalis W83 2552705 NP_905004.1 CDS PG0734 NC_002950.2 783913 784464 D similar to SP:P37718, GB:X54676, and PID:580743; identified by sequence similarity; putative; nitroreductase 783913..784464 Porphyromonas gingivalis W83 2552721 NP_905005.1 CDS PG0735 NC_002950.2 784523 785737 D class V aminotransferase 784523..785737 Porphyromonas gingivalis W83 2552722 NP_905006.1 CDS rnhB NC_002950.2 785748 786353 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 785748..786353 Porphyromonas gingivalis W83 2552686 NP_905007.1 CDS PG0737 NC_002950.2 786328 786606 D identified by match to PFAM protein family HMM PF01402; hypothetical protein 786328..786606 Porphyromonas gingivalis W83 2552714 NP_905008.1 CDS PG0738 NC_002950.2 786603 787055 D similar to GB:X63768, and PID:47572; identified by sequence similarity; putative; cytidine/deoxycytidylate deaminase 786603..787055 Porphyromonas gingivalis W83 2552715 NP_905009.1 CDS PG0739 NC_002950.2 787087 788001 D member of metallo-beta-lactamase; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 787087..788001 Porphyromonas gingivalis W83 2552663 NP_905010.1 CDS PG0740 NC_002950.2 787976 788545 D similar to GB:D26166, and PID:442483; identified by sequence similarity; putative; NLP/P60 family protein 787976..788545 Porphyromonas gingivalis W83 2552664 NP_905011.1 CDS PG0741 NC_002950.2 788807 789406 R identified by match to PFAM protein family HMM PF01844; hypothetical protein complement(788807..789406) Porphyromonas gingivalis W83 2552654 NP_905012.1 CDS pgaA NC_002950.2 789390 790727 R similar to GB:L20916, SP:Q08360, PID:443723, and GB:AL009126; identified by sequence similarity; putative; antigen PgaA complement(789390..790727) Porphyromonas gingivalis W83 2552657 NP_905013.1 CDS PG0744 NC_002950.2 791223 791987 R RNA methyltransferase complement(791223..791987) Porphyromonas gingivalis W83 2552658 NP_905014.1 CDS PG0745 NC_002950.2 792072 792470 R identified by match to TIGR protein family HMM TIGR00068; lactoylglutathione lyase complement(792072..792470) Porphyromonas gingivalis W83 2551520 NP_905015.1 CDS PG0746 NC_002950.2 792626 793993 R sensor histidine kinase complement(792626..793993) Porphyromonas gingivalis W83 2551506 NP_905016.1 CDS PG0747 NC_002950.2 793990 795384 R similar to GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, PID:825686, GB:X06182, GB:S68472, GB:X65959, GB:X69301, GB:X69302, GB:X69303, GB:X69304, GB:X69305, GB:X69306, GB:X69307, GB:X69308, GB:X69309, GB:X69310, GB:X69311, GB:X69312, GB:X69313, GB:X69314, GB:X69315, GB:X69316, GB:X72595, GB:X72599, SP:P10721, PID:34087, and PID:825686; identified by sequence similarity; putative; sigma-54 dependent DNA-binding response regulator complement(793990..795384) Porphyromonas gingivalis W83 2551510 NP_905017.1 CDS PG0749 NC_002950.2 795628 795744 R hypothetical protein complement(795628..795744) Porphyromonas gingivalis W83 2551508 NP_905018.1 CDS PG0750 NC_002950.2 796036 796782 R identified by match to PFAM protein family HMM PF00535; glycosyl transferase group 2 family protein complement(796036..796782) Porphyromonas gingivalis W83 2551504 NP_905019.1 CDS porT NC_002950.2 796934 797668 R porT protein complement(796934..797668) Porphyromonas gingivalis W83 2552734 NP_905020.1 CDS upp NC_002950.2 797807 798457 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 797807..798457 Porphyromonas gingivalis W83 2552744 NP_905021.1 CDS prtQ NC_002950.2 798441 800348 D protease 798441..800348 Porphyromonas gingivalis W83 2552742 NP_905022.1 CDS topA NC_002950.2 801083 803449 D DNA topoisomerase I 801083..803449 Porphyromonas gingivalis W83 2552750 NP_905023.1 CDS PG0756 NC_002950.2 804411 805763 R hypothetical protein complement(804411..805763) Porphyromonas gingivalis W83 2552753 NP_905024.1 CDS PG0757 NC_002950.2 805813 806460 R hypothetical protein complement(805813..806460) Porphyromonas gingivalis W83 2552754 NP_905025.1 CDS dcp-1 NC_002950.2 806557 808644 R peptidyl-dipeptidase Dcp complement(806557..808644) Porphyromonas gingivalis W83 2552748 NP_905026.1 CDS PG0759 NC_002950.2 808722 810875 R hypothetical protein complement(808722..810875) Porphyromonas gingivalis W83 2552756 NP_905027.1 CDS PG0762 NC_002950.2 812899 814275 D similar to GB:M86737, SP:Q08945, and PID:184242; identified by sequence similarity; putative; trigger factor 812899..814275 Porphyromonas gingivalis W83 2552758 NP_905028.1 CDS pnpA NC_002950.2 816264 818495 R similar to SP:P08367, GB:M97495, GB:M13608, PID:147249, PID:147691, PID:537237, and PID:1790859; identified by sequence similarity; putative; polynucleotide phosphorylase complement(816264..818495) Porphyromonas gingivalis W83 2552025 NP_905029.1 CDS malQ NC_002950.2 818647 820623 R 4-alpha-glucanotransferase complement(818647..820623) Porphyromonas gingivalis W83 2552026 NP_905030.1 CDS PG0768 NC_002950.2 821365 822471 R hypothetical protein complement(821365..822471) Porphyromonas gingivalis W83 2552027 NP_905031.1 CDS PG0769 NC_002950.2 822645 824267 R fibronectin type III complement(822645..824267) Porphyromonas gingivalis W83 2552029 NP_905032.1 CDS PG0770 NC_002950.2 824249 824665 R hypothetical protein complement(824249..824665) Porphyromonas gingivalis W83 2552030 NP_905033.1 CDS PG0771 NC_002950.2 824664 824927 D hypothetical protein 824664..824927 Porphyromonas gingivalis W83 2552759 NP_905034.1 CDS PG0772 NC_002950.2 825115 825264 D hypothetical protein 825115..825264 Porphyromonas gingivalis W83 2552760 NP_905035.1 CDS PG0773 NC_002950.2 825271 825408 D hypothetical protein 825271..825408 Porphyromonas gingivalis W83 2552761 NP_905036.1 CDS PG0774 NC_002950.2 825787 827031 R hypothetical protein complement(825787..827031) Porphyromonas gingivalis W83 2552763 NP_905037.1 CDS PG0775 NC_002950.2 827522 829243 R acyl-CoA dehydrogenase complement(827522..829243) Porphyromonas gingivalis W83 2552766 NP_905038.1 CDS etfA-1 NC_002950.2 829255 830274 R similar to GB:M13144, GB:M13981, GB:X04446, GB:X04445, SP:P05111, PID:1204105, PID:186413, PID:307068, and PID:490130; identified by sequence similarity; putative; electron transfer flavoprotein subunit alpha complement(829255..830274) Porphyromonas gingivalis W83 2552768 NP_905039.1 CDS etfB-1 NC_002950.2 830283 831149 R electron transfer flavoprotein subunit beta complement(830283..831149) Porphyromonas gingivalis W83 2552764 NP_905040.1 CDS PG0778 NC_002950.2 831240 831959 R similar to SP:P05974; identified by sequence similarity; putative; hypothetical protein complement(831240..831959) Porphyromonas gingivalis W83 2552769 NP_905041.1 CDS PG0779 NC_002950.2 832190 832663 R hypothetical protein complement(832190..832663) Porphyromonas gingivalis W83 2552765 NP_905042.1 CDS PG0780 NC_002950.2 832679 833293 R hypothetical protein complement(832679..833293) Porphyromonas gingivalis W83 2552774 NP_905043.1 CDS PG0781 NC_002950.2 833329 833799 R hypothetical protein complement(833329..833799) Porphyromonas gingivalis W83 2552775 NP_905044.1 CDS PG0782 NC_002950.2 833808 834620 R MotA/TolQ/ExbB proton channel family protein complement(833808..834620) Porphyromonas gingivalis W83 2552776 NP_905045.1 CDS PG0783 NC_002950.2 834968 835795 R hydrolase complement(834968..835795) Porphyromonas gingivalis W83 2552777 NP_905046.1 CDS PG0784 NC_002950.2 835842 836819 R similar to GB:L34060, SP:P55286, and PID:506412; identified by sequence similarity; putative; polyprenyl synthetase complement(835842..836819) Porphyromonas gingivalis W83 2552782 NP_905047.1 CDS PG0785 NC_002950.2 836990 837682 R tonB protein complement(836990..837682) Porphyromonas gingivalis W83 2552784 NP_905048.1 CDS PG0786 NC_002950.2 837660 837782 R hypothetical protein complement(837660..837782) Porphyromonas gingivalis W83 2552781 NP_905049.1 CDS PG0787 NC_002950.2 837815 838057 D hypothetical protein 837815..838057 Porphyromonas gingivalis W83 2552771 NP_905050.1 CDS PG0788 NC_002950.2 838133 840766 R hypothetical protein complement(838133..840766) Porphyromonas gingivalis W83 2552780 NP_905051.1 CDS PG0789 NC_002950.2 840792 841508 R hypothetical protein complement(840792..841508) Porphyromonas gingivalis W83 2552789 NP_905052.1 CDS obgE NC_002950.2 841489 842673 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(841489..842673) Porphyromonas gingivalis W83 2552791 NP_905053.1 CDS adk NC_002950.2 842683 843267 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(842683..843267) Porphyromonas gingivalis W83 2552793 NP_905054.1 CDS hpt NC_002950.2 843268 843804 R similar to GB:Z11584, GB:Z11583, GB:Z14227, GB:Z14229, and GB:Z14228; identified by sequence similarity; putative; hypoxanthine phosphoribosyltransferase complement(843268..843804) Porphyromonas gingivalis W83 2552792 NP_905055.1 CDS fbp NC_002950.2 844428 846395 D similar to GB:U07794, GB:U07793, GB:L27071, GB:U07791, GB:U07792, SP:P42681, PID:1161364, PID:508223, PID:508224, and PID:684986; identified by sequence similarity; putative; fructose-1,6-bisphosphatase 844428..846395 Porphyromonas gingivalis W83 2552795 NP_905056.1 CDS PG0794 NC_002950.2 846551 848911 D penicillin-binding protein 1A 846551..848911 Porphyromonas gingivalis W83 2552787 NP_905057.1 CDS PG0795 NC_002950.2 848953 849663 D similar to SP:P15318, GB:Y00545, PID:396666, PID:39732, PID:412231, and PID:580668; identified by sequence similarity; putative; hypothetical protein 848953..849663 Porphyromonas gingivalis W83 2552797 NP_905058.1 CDS leuS NC_002950.2 849763 852540 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(849763..852540) Porphyromonas gingivalis W83 2552799 NP_905059.1 CDS PG0798 NC_002950.2 852985 853887 D ISPg3, transposase 852985..853887 Porphyromonas gingivalis W83 2552801 NP_905060.1 CDS PG0799 NC_002950.2 854474 854659 D hypothetical protein 854474..854659 Porphyromonas gingivalis W83 2552803 NP_905061.1 CDS PG0800 NC_002950.2 854809 856368 R hypothetical protein complement(854809..856368) Porphyromonas gingivalis W83 2552807 NP_905062.1 CDS PG0801 NC_002950.2 856353 857804 R poly(A) polymerase complement(856353..857804) Porphyromonas gingivalis W83 2552809 NP_905063.1 CDS pdhD NC_002950.2 858463 859812 R similar to GB:M14584, GB:Y00081, GB:M18403, GB:S56892, GB:X04403, GB:A09367, GB:M54894, GB:X04602, GB:M29150, SP:P05231, PID:186352, PID:23833, PID:23835, PID:29495, PID:306910, PID:306911, PID:307063, PID:32674, PID:33850, PID:490070, GB:Z22970, and PID:312146; identified by sequence similarity; putative; alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase complement(858463..859812) Porphyromonas gingivalis W83 2552810 NP_905064.1 CDS nagB NC_002950.2 859817 860608 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(859817..860608) Porphyromonas gingivalis W83 2552811 NP_905065.1 CDS PG0804 NC_002950.2 860647 861855 R flavodoxin complement(860647..861855) Porphyromonas gingivalis W83 2552812 NP_905066.1 CDS lgt NC_002950.2 861889 862740 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(861889..862740) Porphyromonas gingivalis W83 2552813 NP_905067.1 CDS PG0806 NC_002950.2 862777 863682 R Gfo/Idh/MocA family oxidoreductase complement(862777..863682) Porphyromonas gingivalis W83 2552814 NP_905068.1 CDS PG0807 NC_002950.2 863720 864814 R similar to GB:X59960, GB:X52679, GB:M59916, GB:M59917, GB:X52678, GB:M81780, GB:X63600, SP:P17405, PID:179095, PID:28880, PID:402621, PID:553192, PID:556809, PID:825629, PID:972769, and PID:972770; identified by sequence similarity; putative; NusB family protein complement(863720..864814) Porphyromonas gingivalis W83 2552817 NP_905069.1 CDS PG0809 NC_002950.2 865154 872104 R hypothetical protein complement(865154..872104) Porphyromonas gingivalis W83 2552818 NP_905070.1 CDS PG0810 NC_002950.2 872067 872657 R hypothetical protein complement(872067..872657) Porphyromonas gingivalis W83 2552819 NP_905071.1 CDS ruvA NC_002950.2 872691 873299 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(872691..873299) Porphyromonas gingivalis W83 2552822 NP_905072.1 CDS PG0814 NC_002950.2 875994 876341 R hypothetical protein complement(875994..876341) Porphyromonas gingivalis W83 2552823 NP_905073.1 CDS PG0815 NC_002950.2 876370 876507 D hypothetical protein 876370..876507 Porphyromonas gingivalis W83 2552821 NP_905074.1 CDS PG0816 NC_002950.2 876476 876949 R hypothetical protein complement(876476..876949) Porphyromonas gingivalis W83 2552824 NP_905075.1 CDS PG0819 NC_002950.2 877466 878695 D integrase 877466..878695 Porphyromonas gingivalis W83 2552825 NP_905076.1 CDS PG0820 NC_002950.2 878721 879923 D integrase 878721..879923 Porphyromonas gingivalis W83 2552815 NP_905077.1 CDS PG0821 NC_002950.2 879930 880292 D putative lipoprotein 879930..880292 Porphyromonas gingivalis W83 2552805 NP_905078.1 CDS PG0822 NC_002950.2 880418 880825 R hypothetical protein complement(880418..880825) Porphyromonas gingivalis W83 2552831 NP_905079.1 CDS PG0823 NC_002950.2 880958 881272 D similar to GB:L25896, PID:451865, GB:L25896, and PID:451865; identified by sequence similarity; putative; hypothetical protein 880958..881272 Porphyromonas gingivalis W83 2552832 NP_905080.1 CDS PG0824 NC_002950.2 881310 881990 D hypothetical protein 881310..881990 Porphyromonas gingivalis W83 2552829 NP_905081.1 CDS PG0825 NC_002950.2 882153 883238 R ISPg1, transposase complement(882153..883238) Porphyromonas gingivalis W83 2552834 NP_905082.1 CDS PG0826 NC_002950.2 883361 884209 D AraC family transcriptional regulator 883361..884209 Porphyromonas gingivalis W83 2552837 NP_905083.1 CDS PG0827 NC_002950.2 884306 885664 D identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein 884306..885664 Porphyromonas gingivalis W83 2552839 NP_905084.1 CDS PG0829 NC_002950.2 886360 886836 R identified by match to PFAM protein family HMM PF02178; hypothetical protein complement(886360..886836) Porphyromonas gingivalis W83 2552840 NP_905085.1 CDS PG0831 NC_002950.2 887543 887971 D hypothetical protein 887543..887971 Porphyromonas gingivalis W83 2552843 NP_905086.1 CDS PG0832 NC_002950.2 888770 889798 R hypothetical protein complement(888770..889798) Porphyromonas gingivalis W83 2552833 NP_905087.1 CDS PG0833 NC_002950.2 889798 891663 R hypothetical protein complement(889798..891663) Porphyromonas gingivalis W83 2552846 NP_905088.1 CDS PG0834 NC_002950.2 892088 893350 R hypothetical protein complement(892088..893350) Porphyromonas gingivalis W83 2552849 NP_905089.1 CDS PG0835 NC_002950.2 893720 893857 D hypothetical protein 893720..893857 Porphyromonas gingivalis W83 2552850 NP_905090.1 CDS PG0838 NC_002950.2 895617 896915 D integrase 895617..896915 Porphyromonas gingivalis W83 2552853 NP_905091.1 CDS PG0839 NC_002950.2 897353 898534 D hypothetical protein 897353..898534 Porphyromonas gingivalis W83 2552856 NP_905092.1 CDS PG0840 NC_002950.2 898512 902543 D hypothetical protein 898512..902543 Porphyromonas gingivalis W83 2552857 NP_905093.1 CDS PG0841 NC_002950.2 902871 903764 R mobilizable transposon, excision protein complement(902871..903764) Porphyromonas gingivalis W83 2552859 NP_905094.1 CDS PG0842 NC_002950.2 903900 904964 R mobilizable transposon protein complement(903900..904964) Porphyromonas gingivalis W83 2552860 NP_905095.1 CDS PG0843 NC_002950.2 904961 905272 R hypothetical protein complement(904961..905272) Porphyromonas gingivalis W83 2552861 NP_905096.1 CDS PG0844 NC_002950.2 905429 905521 D hypothetical protein 905429..905521 Porphyromonas gingivalis W83 2552862 NP_905097.1 CDS PG0847 NC_002950.2 907894 909474 D hypothetical protein 907894..909474 Porphyromonas gingivalis W83 2552868 NP_905098.1 CDS PG0848 NC_002950.2 909579 910577 R hypothetical protein complement(909579..910577) Porphyromonas gingivalis W83 2552865 NP_905099.1 CDS PG0849 NC_002950.2 910562 911332 R hypothetical protein complement(910562..911332) Porphyromonas gingivalis W83 2552844 NP_905100.1 CDS PG0850 NC_002950.2 911360 911668 R identified by match to TIGR protein family HMM TIGR01764; excisionase DNA-binding protein complement(911360..911668) Porphyromonas gingivalis W83 2552869 NP_905101.1 CDS PG0851 NC_002950.2 911656 912822 R hypothetical protein complement(911656..912822) Porphyromonas gingivalis W83 2552870 NP_905102.1 CDS PG0853 NC_002950.2 914524 915009 D histone-like family DNA-binding protein 914524..915009 Porphyromonas gingivalis W83 2552871 NP_905103.1 CDS PG0854 NC_002950.2 915010 915828 D hypothetical protein 915010..915828 Porphyromonas gingivalis W83 2552873 NP_905104.1 CDS PG0855 NC_002950.2 916050 916145 R hypothetical protein complement(916050..916145) Porphyromonas gingivalis W83 2552876 NP_905105.1 CDS PG0856 NC_002950.2 916330 917235 D hypothetical protein 916330..917235 Porphyromonas gingivalis W83 2552877 NP_905106.1 CDS PG0857 NC_002950.2 917459 917683 D identified by match to PFAM protein family HMM PF01381; transcriptional regulator 917459..917683 Porphyromonas gingivalis W83 2552878 NP_905107.1 CDS PG0858 NC_002950.2 917680 918015 D similar to GB:D90318, GB:D90319, GB:D90320, GB:D90321, GB:D90322, GB:D90323, GB:D90324, GB:D90325, GB:D90326, GB:D90327, GB:D90328, GB:D90329, GB:D90330, GB:D90331, GB:D90332, GB:D90333, GB:D90334, GB:X16323, GB:M29145, GB:M60718, GB:M73239, SP:P14210, PID:1378042, PID:184032, PID:184034, PID:219700, PID:306846, PID:32082, PID:32084, and PID:337936; identified by sequence similarity; putative; hypothetical protein 917680..918015 Porphyromonas gingivalis W83 2552879 NP_905108.1 CDS PG0859 NC_002950.2 918005 918943 D similar to GB:D90318, GB:D90319, GB:D90320, GB:D90321, GB:D90322, GB:D90323, GB:D90324, GB:D90325, GB:D90326, GB:D90327, GB:D90328, GB:D90329, GB:D90330, GB:D90331, GB:D90332, GB:D90333, GB:D90334, GB:X16323, GB:M29145, GB:M60718, GB:M73239, SP:P14210, PID:1378042, PID:184032, PID:184034, PID:219700, PID:306846, PID:32082, PID:32084, and PID:337936; identified by sequence similarity; putative; hypothetical protein 918005..918943 Porphyromonas gingivalis W83 2552881 NP_905109.1 CDS PG0860 NC_002950.2 919028 919333 D transcriptional regulator 919028..919333 Porphyromonas gingivalis W83 2552882 NP_905110.1 CDS PG0861 NC_002950.2 919387 922869 D similar to GB:M36711, GB:M61156, GB:X77343, and SP:P05549; identified by sequence similarity; putative; Snf2/Rad54 family helicase 919387..922869 Porphyromonas gingivalis W83 2552884 NP_905111.1 CDS PG0862 NC_002950.2 922880 926278 D Possibly an isoschizomer of Eco57IR.; type IIS restriction endonuclease 922880..926278 Porphyromonas gingivalis W83 2552872 NP_905112.1 CDS mpi NC_002950.2 927139 927759 R in Bacteroides fragilis this site-specific serine recombinase globally regulates a number of loci involved in capsular polysaccharide production; multiple promoter invertase complement(927139..927759) Porphyromonas gingivalis W83 2552887 NP_905113.1 CDS PG0865 NC_002950.2 927856 928986 R similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase complement(927856..928986) Porphyromonas gingivalis W83 2552883 NP_905114.1 CDS PG0866 NC_002950.2 929123 930268 D hypothetical protein 929123..930268 Porphyromonas gingivalis W83 2552889 NP_905115.1 CDS PG0867 NC_002950.2 930328 931023 R hypothetical protein complement(930328..931023) Porphyromonas gingivalis W83 2552891 NP_905116.1 CDS PG0868 NC_002950.2 931020 931943 R similar to GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:; mobilization protein complement(931020..931943) Porphyromonas gingivalis W83 2552892 NP_905117.1 CDS PG0869 NC_002950.2 931940 932293 R mobilization protein complement(931940..932293) Porphyromonas gingivalis W83 2552896 NP_905118.1 CDS PG0870 NC_002950.2 932394 933452 R hypothetical protein complement(932394..933452) Porphyromonas gingivalis W83 2552897 NP_905119.1 CDS PG0871 NC_002950.2 933550 934926 R hypothetical protein complement(933550..934926) Porphyromonas gingivalis W83 2552898 NP_905120.1 CDS PG0872 NC_002950.2 934936 935295 R mobilizable transposon, Xis protein complement(934936..935295) Porphyromonas gingivalis W83 2552899 NP_905121.1 CDS PG0873 NC_002950.2 936200 936898 R mobilizable transposon, TnpC protein complement(936200..936898) Porphyromonas gingivalis W83 2552900 NP_905122.1 CDS PG0874 NC_002950.2 937000 938103 R mobilizable transposon, int protein complement(937000..938103) Porphyromonas gingivalis W83 2552880 NP_905123.1 CDS PG0875 NC_002950.2 938192 939094 R similar to GB:L32019, and PID:474892; identified by sequence similarity; putative; mobilizable transposon, TnpA protein complement(938192..939094) Porphyromonas gingivalis W83 2552904 NP_905124.1 CDS trmE NC_002950.2 939340 940896 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(939340..940896) Porphyromonas gingivalis W83 2552901 NP_905125.1 CDS PG0877 NC_002950.2 940928 941635 R hypothetical protein complement(940928..941635) Porphyromonas gingivalis W83 2552906 NP_905126.1 CDS PG0879 NC_002950.2 942021 942626 R hypothetical protein complement(942021..942626) Porphyromonas gingivalis W83 2552907 NP_905127.1 CDS bcp NC_002950.2 942679 943182 D similar to GB:L19338, SP:P37926, PID:349136, GB:M26665, GB:M18372, GB:L05514, SP:P15515, SP:P15516, PID:179466, PID:184058, and PID:292146; identified by sequence similarity; putative; bacterioferritin comigratory protein 942679..943182 Porphyromonas gingivalis W83 2552910 NP_905128.1 CDS recA NC_002950.2 943203 944225 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 943203..944225 Porphyromonas gingivalis W83 2552911 NP_905129.1 CDS PG0882 NC_002950.2 944335 945264 D hypothetical protein 944335..945264 Porphyromonas gingivalis W83 2552912 NP_905130.1 CDS PG0883 NC_002950.2 945261 946622 D hypothetical protein 945261..946622 Porphyromonas gingivalis W83 2552903 NP_905131.1 CDS PG0884 NC_002950.2 946619 947869 D hypothetical protein 946619..947869 Porphyromonas gingivalis W83 2552915 NP_905132.1 CDS PG0885 NC_002950.2 947885 948985 D similar to GB:Z21507, SP:P29692, and PID:38522; identified by sequence similarity; putative; phospho-2-dehydro-3-deoxyheptonate aldolase 947885..948985 Porphyromonas gingivalis W83 2552917 NP_905133.1 CDS PG0886 NC_002950.2 948982 949746 D hypothetical protein 948982..949746 Porphyromonas gingivalis W83 2552916 NP_905134.1 CDS PG0888 NC_002950.2 950050 950181 D hypothetical protein 950050..950181 Porphyromonas gingivalis W83 2552914 NP_905135.1 CDS PG0889 NC_002950.2 950240 951436 D M24 family peptidase 950240..951436 Porphyromonas gingivalis W83 2552926 NP_905136.1 CDS PG0890 NC_002950.2 951472 953163 D alkaline phosphatase 951472..953163 Porphyromonas gingivalis W83 2552918 NP_905137.2 CDS PG0893 NC_002950.2 954291 955931 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(954291..955931) Porphyromonas gingivalis W83 2552921 NP_905138.1 CDS radC NC_002950.2 956168 956851 R similar to GB:U05670; identified by sequence similarity; putative; DNA repair protein RadC complement(956168..956851) Porphyromonas gingivalis W83 2552924 NP_905139.1 CDS lacZ-2 NC_002950.2 957389 960442 D beta-galactosidase 957389..960442 Porphyromonas gingivalis W83 2552047 NP_905140.1 CDS PG0897 NC_002950.2 960958 962562 R alpha-amylase complement(960958..962562) Porphyromonas gingivalis W83 2552045 NP_905141.1 CDS PG0898 NC_002950.2 962649 963440 R similar to GB:D10483, SP:P06137, GB:K02668, GB:M36531, GB:X02821, PID:146025, PID:146032, PID:216508, PID:40862, PID:41494, GB:U00096, PID:1786282, GB:D10483, SP:P06137, GB:K02668, GB:M36531, GB:X02821, PID:146025, PID:146032, PID:216508, PID:40862, PID:41494, GB:U00096, and PID:1786282; identified by sequence similarity; putative; hypothetical protein complement(962649..963440) Porphyromonas gingivalis W83 2552048 NP_905142.1 CDS cydB NC_002950.2 963587 964750 R similar to GB:X59066, GB:X65460, GB:D28126, GB:D14710, SP:P25705, PID:28938, PID:34468, PID:559317, and PID:559325; identified by sequence similarity; putative; cytochrome d ubiquinol oxidase subunit II complement(963587..964750) Porphyromonas gingivalis W83 2552050 NP_905143.1 CDS cydA NC_002950.2 964796 966379 R similar to SP:P11697; identified by sequence similarity; putative; cytochrome d ubiquinol oxidase subunit I complement(964796..966379) Porphyromonas gingivalis W83 2552052 NP_905144.1 CDS PG0901 NC_002950.2 966405 966653 R hypothetical protein complement(966405..966653) Porphyromonas gingivalis W83 2552053 NP_905145.1 CDS PG0902 NC_002950.2 966836 969061 R alpha-1,2-mannosidase complement(966836..969061) Porphyromonas gingivalis W83 2552055 NP_905146.1 CDS PG0903 NC_002950.2 969188 969730 R identified by match to TIGR protein family HMM TIGR00286; hypothetical protein complement(969188..969730) Porphyromonas gingivalis W83 2552057 NP_905147.1 CDS PG0906 NC_002950.2 970756 971208 D putative lipoprotein 970756..971208 Porphyromonas gingivalis W83 2552059 NP_905148.1 CDS PG0908 NC_002950.2 971320 971811 R identified by match to PFAM protein family HMM PF03167; G/U mismatch-specific DNA glycosylase complement(971320..971811) Porphyromonas gingivalis W83 2552060 NP_905149.1 CDS PG0909 NC_002950.2 971828 973129 R hypothetical protein complement(971828..973129) Porphyromonas gingivalis W83 2552061 NP_905150.1 CDS PG0910 NC_002950.2 973184 973756 R FHA domain-containing protein complement(973184..973756) Porphyromonas gingivalis W83 2552062 NP_905151.1 CDS PG0912 NC_002950.2 973881 975446 R identified by match to TIGR protein family HMM TIGR01695; polysaccharide transport protein complement(973881..975446) Porphyromonas gingivalis W83 2552065 NP_905152.1 CDS PG0914 NC_002950.2 975794 976507 R hypothetical protein complement(975794..976507) Porphyromonas gingivalis W83 2552064 NP_905153.1 CDS PG0915 NC_002950.2 976725 977117 D hypothetical protein 976725..977117 Porphyromonas gingivalis W83 2552066 NP_905154.1 CDS PG0917 NC_002950.2 977792 978187 R similar to SP:P03064, PID:1045524, PID:151680, PID:501832, PID:1053000, SP:P26295, and GB:X17241; identified by sequence similarity; putative; GtrA family protein complement(977792..978187) Porphyromonas gingivalis W83 2552933 NP_905155.1 CDS PG0918 NC_002950.2 978153 978908 R hypothetical protein complement(978153..978908) Porphyromonas gingivalis W83 2552927 NP_905156.1 CDS pyrC NC_002950.2 979075 980424 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(979075..980424) Porphyromonas gingivalis W83 2552925 NP_905157.1 CDS PG0920 NC_002950.2 980435 981115 R glycosyl transferase group 2 family protein complement(980435..981115) Porphyromonas gingivalis W83 2552929 NP_905158.1 CDS PG0922 NC_002950.2 981318 982541 R hypothetical protein complement(981318..982541) Porphyromonas gingivalis W83 2552930 NP_905159.1 CDS rbfA NC_002950.2 982569 982904 R identified by match to TIGR protein family HMM TIGR00082; ribosome-binding factor A complement(982569..982904) Porphyromonas gingivalis W83 2552932 NP_905160.1 CDS PG0924 NC_002950.2 982943 983758 R identified by match to TIGR protein family HMM TIGR01680; 5'-nucleotidase complement(982943..983758) Porphyromonas gingivalis W83 2552936 NP_905161.1 CDS tmk NC_002950.2 983755 984369 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(983755..984369) Porphyromonas gingivalis W83 2552938 NP_905162.1 CDS PG0926 NC_002950.2 984497 984724 R hypothetical protein complement(984497..984724) Porphyromonas gingivalis W83 2552939 NP_905163.1 CDS PG0927 NC_002950.2 984724 985140 R hypothetical protein complement(984724..985140) Porphyromonas gingivalis W83 2552943 NP_905164.1 CDS PG0928 NC_002950.2 985152 986708 R response regulator complement(985152..986708) Porphyromonas gingivalis W83 2552944 NP_905165.1 CDS PG0929 NC_002950.2 986757 987239 R hypothetical protein complement(986757..987239) Porphyromonas gingivalis W83 2552945 NP_905166.1 CDS PG0930 NC_002950.2 987243 987632 R hypothetical protein complement(987243..987632) Porphyromonas gingivalis W83 2552937 NP_905167.1 CDS PG0932 NC_002950.2 988643 989893 D DNA polymerase III, delta prime subunit 988643..989893 Porphyromonas gingivalis W83 2552948 NP_905168.1 CDS PG0933 NC_002950.2 990137 992296 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 990137..992296 Porphyromonas gingivalis W83 2552946 NP_905169.1 CDS PG0934 NC_002950.2 992504 994408 R hypothetical protein complement(992504..994408) Porphyromonas gingivalis W83 2552942 NP_905170.1 CDS ispE NC_002950.2 994387 995211 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(994387..995211) Porphyromonas gingivalis W83 2552951 NP_905171.1 CDS PG0936 NC_002950.2 995240 996541 R xanthine/uracil permease complement(995240..996541) Porphyromonas gingivalis W83 2552950 NP_905172.1 CDS PG0937 NC_002950.2 996562 997284 R hypothetical protein complement(996562..997284) Porphyromonas gingivalis W83 2552953 NP_905173.1 CDS PG0938 NC_002950.2 997284 1000475 R identified by match to TIGR protein family HMM TIGR01652; calcium-transporting ATPase complement(997284..1000475) Porphyromonas gingivalis W83 2552954 NP_905174.1 CDS PG0942 NC_002950.2 1002203 1002598 D ISPg5, transposase Orf1 1002203..1002598 Porphyromonas gingivalis W83 2552961 NP_905175.1 CDS PG0943 NC_002950.2 1002652 1003590 D identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 1002652..1003590 Porphyromonas gingivalis W83 2552962 NP_905176.1 CDS PG0945 NC_002950.2 1005194 1006522 R ABC transporter permease complement(1005194..1006522) Porphyromonas gingivalis W83 2552964 NP_905177.1 CDS PG0946 NC_002950.2 1006527 1007486 R ABC transporter ATP-binding protein complement(1006527..1007486) Porphyromonas gingivalis W83 2552963 NP_905178.1 CDS PG0947 NC_002950.2 1007489 1007962 R identified by match to PFAM protein family HMM PF04313; hypothetical protein complement(1007489..1007962) Porphyromonas gingivalis W83 2552966 NP_905179.1 CDS PG0948 NC_002950.2 1008031 1008807 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1008031..1008807 Porphyromonas gingivalis W83 2552968 NP_905180.1 CDS PG0949 NC_002950.2 1008826 1009833 D similar to GB:X59739, GB:X59738, GB:X59740, SP:P08048, SP:P17010, PID:340434, PID:38020, PID:38022, and PID:38024; identified by sequence similarity; putative; hypothetical protein 1008826..1009833 Porphyromonas gingivalis W83 2552969 NP_905181.1 CDS gcvH NC_002950.2 1010001 1010381 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1010001..1010381 Porphyromonas gingivalis W83 2552970 NP_905182.1 CDS purE NC_002950.2 1010382 1010888 D similar to GB:M77836, SP:P32322, and PID:189498; identified by sequence similarity; putative; phosphoribosylaminoimidazole carboxylase catalytic subunit PurE 1010382..1010888 Porphyromonas gingivalis W83 2552974 NP_905183.1 CDS ispG NC_002950.2 1011062 1012807 D 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1011062..1012807 Porphyromonas gingivalis W83 2552973 NP_905184.1 CDS dut NC_002950.2 1012864 1013298 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1012864..1013298 Porphyromonas gingivalis W83 2552975 NP_905185.1 CDS PG0954 NC_002950.2 1013326 1015065 D similar to GB:L12710, and PID:414576; identified by sequence similarity; putative; hypothetical protein 1013326..1015065 Porphyromonas gingivalis W83 2552977 NP_905186.1 CDS PG0955 NC_002950.2 1014972 1015925 D hypothetical protein 1014972..1015925 Porphyromonas gingivalis W83 2552979 NP_905187.1 CDS PG0956 NC_002950.2 1015937 1017232 D similar to GB:L10678, SP:P35080, and PID:190388; identified by sequence similarity; putative; M24/M37 family peptidase 1015937..1017232 Porphyromonas gingivalis W83 2552982 NP_905188.1 CDS ribF NC_002950.2 1017220 1018191 D riboflavin biosynthesis protein RibF 1017220..1018191 Porphyromonas gingivalis W83 2552983 NP_905189.1 CDS PG0958 NC_002950.2 1018225 1019460 R ribonuclease BN complement(1018225..1019460) Porphyromonas gingivalis W83 2552984 NP_905190.1 CDS mrp NC_002950.2 1020113 1021231 R similar to GB:M22488, GB:L35279, GB:L35278, SP:P13497, and PID:619424; identified by sequence similarity; putative; ATP-binding Mrp/Nbp35 family protein complement(1020113..1021231) Porphyromonas gingivalis W83 2552986 NP_905191.1 CDS trmB NC_002950.2 1021251 1021985 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(1021251..1021985) Porphyromonas gingivalis W83 2552988 NP_905192.1 CDS PG0961 NC_002950.2 1022033 1022362 R hypothetical protein complement(1022033..1022362) Porphyromonas gingivalis W83 2552978 NP_905193.1 CDS proS NC_002950.2 1022417 1023898 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1022417..1023898) Porphyromonas gingivalis W83 2552990 NP_905194.1 CDS PG0963 NC_002950.2 1024177 1024422 R hypothetical protein complement(1024177..1024422) Porphyromonas gingivalis W83 2552992 NP_905195.1 CDS PG0965 NC_002950.2 1025201 1025866 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1025201..1025866) Porphyromonas gingivalis W83 2552993 NP_905196.1 CDS mrr NC_002950.2 1026968 1027885 D similar to GB:M55249, SP:P21319, PID:145154, GB:M22404, and PID:188866; identified by sequence similarity; putative; Mrr restriction system protein 1026968..1027885 Porphyromonas gingivalis W83 2552997 NP_905197.1 CDS PG0969 NC_002950.2 1028291 1029508 R similar to GB:X12534, SP:P10114, PID:35861, and PID:412184; identified by sequence similarity; putative; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1028291..1029508) Porphyromonas gingivalis W83 2553000 NP_905198.1 CDS PG0970 NC_002950.2 1029746 1030903 D ISPg4, transposase 1029746..1030903 Porphyromonas gingivalis W83 2553002 NP_905199.1 CDS PG0971 NC_002950.2 1031086 1032801 D McrBC restriction endonuclease system, McrB subunit 1031086..1032801 Porphyromonas gingivalis W83 2553003 NP_905200.1 CDS PG0972 NC_002950.2 1032808 1034103 D hypothetical protein 1032808..1034103 Porphyromonas gingivalis W83 2553004 NP_905201.1 CDS PG0973 NC_002950.2 1034307 1036622 D alpha-1,2-mannosidase 1034307..1036622 Porphyromonas gingivalis W83 2552076 NP_905202.1 CDS PG0975 NC_002950.2 1037424 1038416 D similar to GB:J02906, SP:P24903, and PID:181358; identified by sequence similarity; putative; PhoH family protein 1037424..1038416 Porphyromonas gingivalis W83 2552078 NP_905203.1 CDS hemH NC_002950.2 1038466 1039407 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1038466..1039407 Porphyromonas gingivalis W83 2552082 NP_905204.1 CDS ubiE NC_002950.2 1039439 1040176 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1039439..1040176 Porphyromonas gingivalis W83 2552085 NP_905205.1 CDS aroE NC_002950.2 1040173 1040922 D similar to GB:X57766, SP:P24347, PID:456257, and PID:987949; identified by sequence similarity; putative; shikimate 5-dehydrogenase 1040173..1040922 Porphyromonas gingivalis W83 2552086 NP_905206.1 CDS PG0979 NC_002950.2 1040892 1041050 D hypothetical protein 1040892..1041050 Porphyromonas gingivalis W83 2552087 NP_905207.1 CDS PG0980 NC_002950.2 1041037 1043274 D hypothetical protein 1041037..1043274 Porphyromonas gingivalis W83 2552089 NP_905208.1 CDS PG0982 NC_002950.2 1044450 1046702 D hypothetical protein 1044450..1046702 Porphyromonas gingivalis W83 2552092 NP_905209.1 CDS PG0984 NC_002950.2 1046803 1047009 R hypothetical protein complement(1046803..1047009) Porphyromonas gingivalis W83 2552094 NP_905210.1 CDS PG0985 NC_002950.2 1047070 1047576 D similar to GB:L10064, SP:Q05071, and PID:153365; identified by sequence similarity; putative; ECF subfamily RNA polymerase sigma factor 1047070..1047576 Porphyromonas gingivalis W83 2552070 NP_905211.1 CDS PG0986 NC_002950.2 1047566 1048126 D hypothetical protein 1047566..1048126 Porphyromonas gingivalis W83 2552998 NP_905212.1 CDS PG0987 NC_002950.2 1048142 1048918 D hypothetical protein 1048142..1048918 Porphyromonas gingivalis W83 2553008 NP_905213.1 CDS rplT NC_002950.2 1050789 1051136 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1050789..1051136) Porphyromonas gingivalis W83 2553014 NP_905214.1 CDS rpmI NC_002950.2 1051249 1051446 R similar to GB:X59964, SP:P28325, PID:30264, and PID:398711; identified by sequence similarity; putative; 50S ribosomal protein L35 complement(1051249..1051446) Porphyromonas gingivalis W83 2553015 NP_905215.1 CDS infC NC_002950.2 1051524 1052129 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(1051524..1052129) Porphyromonas gingivalis W83 2553017 NP_905216.1 CDS thrS NC_002950.2 1052233 1054194 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1052233..1054194) Porphyromonas gingivalis W83 2553018 NP_905217.1 CDS PG0994 NC_002950.2 1055061 1055159 D hypothetical protein 1055061..1055159 Porphyromonas gingivalis W83 2553019 NP_905218.1 CDS PG0995 NC_002950.2 1055559 1055675 R hypothetical protein complement(1055559..1055675) Porphyromonas gingivalis W83 2553020 NP_905219.1 CDS PG0996 NC_002950.2 1055732 1056640 D hypothetical protein 1055732..1056640 Porphyromonas gingivalis W83 2553022 NP_905220.1 CDS PG0997 NC_002950.2 1056806 1057072 D identified by match to PFAM protein family HMM PF01381; transcriptional regulator 1056806..1057072 Porphyromonas gingivalis W83 2553024 NP_905221.1 CDS PG0998 NC_002950.2 1057069 1057164 D hypothetical protein 1057069..1057164 Porphyromonas gingivalis W83 2553027 NP_905222.1 CDS PG0999 NC_002950.2 1057166 1057711 D hypothetical protein 1057166..1057711 Porphyromonas gingivalis W83 2553026 NP_905223.1 CDS PG1000 NC_002950.2 1057734 1058366 D hypothetical protein 1057734..1058366 Porphyromonas gingivalis W83 2553007 NP_905224.1 CDS PG1001 NC_002950.2 1058370 1058906 D similar to GP:19714875, and SP:P38059; identified by sequence similarity; putative; hypothetical protein 1058370..1058906 Porphyromonas gingivalis W83 2553031 NP_905225.1 CDS PG1002 NC_002950.2 1058911 1059297 D hypothetical protein 1058911..1059297 Porphyromonas gingivalis W83 2553033 NP_905226.1 CDS PG1003 NC_002950.2 1059372 1060364 D hypothetical protein 1059372..1060364 Porphyromonas gingivalis W83 2553030 NP_905227.1 CDS PG1004 NC_002950.2 1060523 1062802 R similar to SP:P38372, PID:484252, and PID:2160219; identified by sequence similarity; putative; prolyl oligopeptidase complement(1060523..1062802) Porphyromonas gingivalis W83 2553035 NP_905228.1 CDS PG1005 NC_002950.2 1063113 1063853 R putative lipoprotein complement(1063113..1063853) Porphyromonas gingivalis W83 2553034 NP_905229.1 CDS PG1006 NC_002950.2 1063884 1066568 R hypothetical protein complement(1063884..1066568) Porphyromonas gingivalis W83 2553038 NP_905230.1 CDS PG1007 NC_002950.2 1066608 1066979 R identified by match to PFAM protein family HMM PF01726; GntR family transcriptional regulator complement(1066608..1066979) Porphyromonas gingivalis W83 2553039 NP_905231.1 CDS PG1008 NC_002950.2 1066976 1067734 R hypothetical protein complement(1066976..1067734) Porphyromonas gingivalis W83 2553040 NP_905232.1 CDS PG1009 NC_002950.2 1067731 1068585 R hypothetical protein complement(1067731..1068585) Porphyromonas gingivalis W83 2553041 NP_905233.1 CDS PG1010 NC_002950.2 1068599 1069426 R similar to SP:P00632; identified by sequence similarity; putative; ABC transporter ATP-binding protein complement(1068599..1069426) Porphyromonas gingivalis W83 2553044 NP_905234.1 CDS PG1012 NC_002950.2 1070179 1071570 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1070179..1071570) Porphyromonas gingivalis W83 2553046 NP_905235.1 CDS PG1013 NC_002950.2 1071874 1073370 D similar to GB:Z14982, GB:X62598, GB:X66401, GB:U17496, GB:U17497, GB:U32863, SP:P28062, PID:1045469, PID:1045471, PID:1054747, PID:38482, PID:596140, and PID:596142; identified by sequence similarity; putative; acetyl-CoA hydrolase/transferase 1071874..1073370 Porphyromonas gingivalis W83 2553045 NP_905236.1 CDS PG1014 NC_002950.2 1073903 1075915 D hypothetical protein 1073903..1075915 Porphyromonas gingivalis W83 2553047 NP_905237.1 CDS PG1015 NC_002950.2 1075967 1076110 R hypothetical protein complement(1075967..1076110) Porphyromonas gingivalis W83 2553048 NP_905238.1 CDS ppdK NC_002950.2 1076278 1079004 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1076278..1079004 Porphyromonas gingivalis W83 2553051 NP_905239.1 CDS PG1018 NC_002950.2 1079034 1079342 D hypothetical protein 1079034..1079342 Porphyromonas gingivalis W83 2553055 NP_905240.1 CDS PG1019 NC_002950.2 1079355 1080536 D putative lipoprotein 1079355..1080536 Porphyromonas gingivalis W83 2553053 NP_905241.1 CDS PG1020 NC_002950.2 1080708 1083518 D hypothetical protein 1080708..1083518 Porphyromonas gingivalis W83 2553043 NP_905242.1 CDS PG1021 NC_002950.2 1083485 1083682 R hypothetical protein complement(1083485..1083682) Porphyromonas gingivalis W83 2553059 NP_905243.1 CDS PG1022 NC_002950.2 1083677 1085158 D hypothetical protein 1083677..1085158 Porphyromonas gingivalis W83 2553060 NP_905244.1 CDS PG1024 NC_002950.2 1086838 1086936 D hypothetical protein 1086838..1086936 Porphyromonas gingivalis W83 2553063 NP_905245.1 CDS PG1025 NC_002950.2 1087281 1088369 D hypothetical protein 1087281..1088369 Porphyromonas gingivalis W83 2553064 NP_905246.1 CDS PG1026 NC_002950.2 1088317 1089048 D hypothetical protein 1088317..1089048 Porphyromonas gingivalis W83 2553062 NP_905247.1 CDS PG1027 NC_002950.2 1089287 1089529 R hypothetical protein complement(1089287..1089529) Porphyromonas gingivalis W83 2553066 NP_905248.1 CDS PG1028 NC_002950.2 1089810 1091156 D hypothetical protein 1089810..1091156 Porphyromonas gingivalis W83 2553067 NP_905249.1 CDS PG1029 NC_002950.2 1091220 1091396 D hypothetical protein 1091220..1091396 Porphyromonas gingivalis W83 2553071 NP_905250.1 CDS PG1030 NC_002950.2 1091540 1092880 D hypothetical protein 1091540..1092880 Porphyromonas gingivalis W83 2553072 NP_905251.1 CDS PG1031 NC_002950.2 1093171 1094256 R ISPg1, transposase complement(1093171..1094256) Porphyromonas gingivalis W83 2553074 NP_905252.1 CDS PG1032 NC_002950.2 1094473 1095375 D ISPg3, transposase 1094473..1095375 Porphyromonas gingivalis W83 2553061 NP_905253.1 CDS PG1033 NC_002950.2 1095538 1096284 D similar to GB:L11998, PID:310609, PID:405561, GB:L11998, PID:310609, and PID:405561; identified by sequence similarity; putative; hypothetical protein 1095538..1096284 Porphyromonas gingivalis W83 2553078 NP_905254.1 CDS PG1034 NC_002950.2 1096303 1097037 D similar to GB:D14694, SP:P48651, and PID:603802; identified by sequence similarity; putative; ABC transporter ATP-binding protein 1096303..1097037 Porphyromonas gingivalis W83 2553080 NP_905255.1 CDS PG1035 NC_002950.2 1097015 1098505 D hypothetical protein 1097015..1098505 Porphyromonas gingivalis W83 2553082 NP_905256.1 CDS uvrA-1 NC_002950.2 1098576 1101479 D similar to GB:X52520, GB:X52509, SP:P17735, PID:1217965, PID:36713, and PID:37502; identified by sequence similarity; putative; excinuclease ABC subunit A 1098576..1101479 Porphyromonas gingivalis W83 2553083 NP_905257.1 CDS PG1037 NC_002950.2 1101505 1102884 D hypothetical protein 1101505..1102884 Porphyromonas gingivalis W83 2553084 NP_905258.1 CDS PG1038 NC_002950.2 1102884 1105181 D UvrD/PcrA/Rep family ATP-dependent DNA helicase 1102884..1105181 Porphyromonas gingivalis W83 2553086 NP_905259.1 CDS PG1039 NC_002950.2 1105415 1107142 R hypothetical protein complement(1105415..1107142) Porphyromonas gingivalis W83 2553088 NP_905260.1 CDS PG1040 NC_002950.2 1107575 1108039 R transcriptional regulator complement(1107575..1108039) Porphyromonas gingivalis W83 2553076 NP_905261.1 CDS PG1041 NC_002950.2 1108060 1109013 R K+-dependent Na+/Ca+ exchanger-like protein complement(1108060..1109013) Porphyromonas gingivalis W83 2553089 NP_905262.1 CDS PG1042 NC_002950.2 1109082 1110728 R glycogen synthase complement(1109082..1110728) Porphyromonas gingivalis W83 2553090 NP_905263.1 CDS feoB-1 NC_002950.2 1110765 1112942 R identified by match to TIGR protein family HMM TIGR01695; ferrous iron transport protein B complement(1110765..1112942) Porphyromonas gingivalis W83 2553093 NP_905264.1 CDS PG1044 NC_002950.2 1112976 1113908 R similar to GB:D16629, PID:416248, and PID:2189974; identified by sequence similarity; putative; iron dependent repressor complement(1112976..1113908) Porphyromonas gingivalis W83 2553094 NP_905265.1 CDS PG1048 NC_002950.2 1115296 1116486 D N-acetylmuramoyl-L-alanine amidase 1115296..1116486 Porphyromonas gingivalis W83 2553100 NP_905266.1 CDS PG1049 NC_002950.2 1116527 1117405 D hypothetical protein 1116527..1117405 Porphyromonas gingivalis W83 2553104 NP_905267.1 CDS PG1050 NC_002950.2 1117412 1118308 D hypothetical protein 1117412..1118308 Porphyromonas gingivalis W83 2553106 NP_905268.1 CDS PG1051 NC_002950.2 1118350 1119765 D hypothetical protein 1118350..1119765 Porphyromonas gingivalis W83 2553105 NP_905269.1 CDS PG1052 NC_002950.2 1119830 1120186 D transcriptional regulator 1119830..1120186 Porphyromonas gingivalis W83 2553102 NP_905270.1 CDS PG1053 NC_002950.2 1120205 1120891 D similar to GB:J01600, SP:P00475, GB:V00272, GB:Z19601, PID:145706, PID:41227, PID:41230, PID:606321, GB:U00096, and PID:1789789; identified by sequence similarity; putative; transcriptional regulator 1120205..1120891 Porphyromonas gingivalis W83 2553107 NP_905271.1 CDS tpr NC_002950.2 1121292 1122737 R similar to GB:X56351, SP:P13196, PID:28583, GB:X56351, SP:P13196, and PID:28583; identified by sequence similarity; putative; thiol protease complement(1121292..1122737) Porphyromonas gingivalis W83 2553108 NP_905272.1 CDS PG1056 NC_002950.2 1123120 1123539 D similar to GB:Z12296, PID:43338, GB:Z12296, and PID:43338; identified by sequence similarity; putative; hypothetical protein 1123120..1123539 Porphyromonas gingivalis W83 2551799 NP_905273.1 CDS PG1057 NC_002950.2 1123559 1124152 D identified by match to PFAM protein family HMM PF04055; hypothetical protein 1123559..1124152 Porphyromonas gingivalis W83 2553109 NP_905274.1 CDS PG1058 NC_002950.2 1124174 1126192 D OmpA family protein 1124174..1126192 Porphyromonas gingivalis W83 2553111 NP_905275.1 CDS PG1059 NC_002950.2 1126286 1126585 R hypothetical protein complement(1126286..1126585) Porphyromonas gingivalis W83 2553110 NP_905276.1 CDS PG1060 NC_002950.2 1126798 1128507 D similar to GB:M60874, SP:P30959, and PID:152077; identified by sequence similarity; putative; carboxyl-terminal protease 1126798..1128507 Porphyromonas gingivalis W83 2553114 NP_905277.1 CDS PG1061 NC_002950.2 1128820 1129908 R similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg6, transposase complement(1128820..1129908) Porphyromonas gingivalis W83 2553116 NP_905278.1 CDS PG1063 NC_002950.2 1131196 1131636 D transcriptional regulator 1131196..1131636 Porphyromonas gingivalis W83 2553117 NP_905279.1 CDS PG1064 NC_002950.2 1131688 1132485 D similar to GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:X59892, GB:X67918, GB:X67919, GB:X67920, GB:X67921, GB:X67922, GB:X67923, GB:X67924, GB:X67926, GB:X67927, GB:X67928, GB:X71411, GB:X63742, GB:M61715, GB:M77804, SP:P23381, PID:184657, PID:30821, PID:32709, PID:340368, GB:Y00443, GB:M29706, GB:S68144, GB:M60331, SP:P04553, PID:1335010, PID:190454, PID:190528, PID:35686, PID:642459, and PID:; dihydroorotate dehydrogenase 1131688..1132485 Porphyromonas gingivalis W83 2553119 NP_905280.1 CDS pyrD NC_002950.2 1132467 1133390 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1132467..1133390 Porphyromonas gingivalis W83 2553121 NP_905281.1 CDS ctfA NC_002950.2 1133661 1134305 D similar to GB:M77232, GB:X67309, GB:J03537, SP:P10660, PID:307393, PID:337516, and PID:36148; identified by sequence similarity; putative; butyrate-acetoacetate CoA-transferase subunit A 1133661..1134305 Porphyromonas gingivalis W83 2552103 NP_905282.1 CDS PG1067 NC_002950.2 1134359 1134748 D similar to GP:19713115; identified by sequence similarity; putative; hypothetical protein 1134359..1134748 Porphyromonas gingivalis W83 2553207 NP_905283.1 CDS PG1068 NC_002950.2 1134776 1135597 D similar to SP:P13685, GB:D26562, GB:M20574, GB:S48039, PID:147117, PID:259663, PID:473802, GB:U00096, and PID:1786336; identified by sequence similarity; putative; hypothetical protein 1134776..1135597 Porphyromonas gingivalis W83 2553202 NP_905284.1 CDS PG1069 NC_002950.2 1135639 1136682 D zinc-containing alcohol dehydrogenase 1135639..1136682 Porphyromonas gingivalis W83 2553208 NP_905285.1 CDS kamA NC_002950.2 1136769 1138019 D L-lysine 2,3-aminomutase 1136769..1138019 Porphyromonas gingivalis W83 2553203 NP_905286.1 CDS PG1071 NC_002950.2 1138148 1139116 D similar to GP:19713109; identified by sequence similarity; putative; hypothetical protein 1138148..1139116 Porphyromonas gingivalis W83 2553205 NP_905287.1 CDS PG1072 NC_002950.2 1139116 1140507 D similar to GB:S70527, GB:L37374, SP:P39748, GB:X76771, and PID:642090; identified by sequence similarity; putative; MutS family protein 1139116..1140507 Porphyromonas gingivalis W83 2553210 NP_905288.1 CDS kamD NC_002950.2 1140535 1142106 D D-lysine 5,6-aminomutase subunit alpha 1140535..1142106 Porphyromonas gingivalis W83 2553370 NP_905289.1 CDS kamE NC_002950.2 1142103 1142894 D D-lysine 5,6-aminomutase subunit beta 1142103..1142894 Porphyromonas gingivalis W83 2553346 NP_905290.1 CDS PG1075 NC_002950.2 1142918 1143580 D coenzyme A transferase subunit beta 1142918..1143580 Porphyromonas gingivalis W83 2552189 NP_905291.1 CDS acdA NC_002950.2 1143625 1144764 D similar to GB:D26185, SP:P37497, PID:467350, GB:AL009126, GB:U07447, SP:P01621, SP:P01623, SP:P06311, SP:P18136, PID:470430, PID:470554, PID:470562, PID:470568, PID:470576, PID:470578, PID:470580, PID:470584, PID:470586, PID:470598, PID:470618, PID:511004, PID:553478, PID:560766, PID:561703, PID:587346, PID:587352, PID:619431, PID:619433, PID:619617, PID:619618, PID:619761, PID:619762, PID:619767, PID:619768, PID:619769, PID:681900, PID:695533, PID:695536, PID:722418, PID:722424, PID:722462, PID:722476, PID:722494, PID:722500, PID:722518, PID:722522, PID:722536, PID:722580, PID:722582, PID:722584, PID:722596, PID:732740, PID:860992, and PID:860998; identified by sequence similarity; putative; acyl-CoA dehydrogenase 1143625..1144764 Porphyromonas gingivalis W83 2553371 NP_905292.1 CDS etfB-2 NC_002950.2 1144779 1145564 D similar to GB:U07447, SP:P01621, SP:P01623, SP:P06311, SP:P18136, PID:470430, PID:470554, PID:470562, PID:470568, PID:470576, PID:470578, PID:470580, PID:470584, PID:470586, PID:470598, PID:470618, PID:511004, PID:553478, PID:560766, PID:561703, PID:587346, PID:587352, PID:619431, PID:619433, PID:619617, PID:619618, PID:619761, PID:619762, PID:619767, PID:619768, PID:619769, PID:681900, PID:695533, PID:695536, PID:722418, PID:722424, PID:722462, PID:722476, PID:722494, PID:722500, PID:722518, PID:722522, PID:722536, PID:722580, PID:722582, PID:722584, PID:722596, PID:732740, PID:860992, and PID:860998; identified by sequence similarity; putative; electron transfer flavoprotein subunit beta 1144779..1145564 Porphyromonas gingivalis W83 2552174 NP_905293.1 CDS etfA-2 NC_002950.2 1145578 1146585 D similar to GB:U07447, SP:P01621, SP:P01623, SP:P06311, SP:P18136, PID:470430, PID:470554, PID:470562, PID:470568, PID:470576, PID:470578, PID:470580, PID:470584, PID:470586, PID:470598, PID:470618, PID:511004, PID:553478, PID:560766, PID:561703, PID:587346, PID:587352, PID:619431, PID:619433, PID:619617, PID:619618, PID:619761, PID:619762, PID:619767, PID:619768, PID:619769, PID:681900, PID:695533, PID:695536, PID:722418, PID:722424, PID:722462, PID:722476, PID:722494, PID:722500, PID:722518, PID:722522, PID:722536, PID:722580, PID:722582, PID:722584, PID:722596, PID:732740, PID:860992, and PID:860998; identified by sequence similarity; putative; electron transfer flavoprotein subunit alpha 1145578..1146585 Porphyromonas gingivalis W83 2552180 NP_905294.1 CDS PG1079 NC_002950.2 1146689 1147459 D similar to GB:X01563, SP:P02425, PID:42980, PID:606243, GB:U00096, and PID:1789705; identified by sequence similarity; putative; enoyl-CoA hydratase/isomerase 1146689..1147459 Porphyromonas gingivalis W83 2552181 NP_905295.1 CDS PG1080 NC_002950.2 1147506 1148351 D similar to GB:D10653, GB:L10373, GB:D29808, SP:P41732, PID:285901, and PID:475006; identified by sequence similarity; putative; 3-hydroxyacyl-CoA dehydrogenase 1147506..1148351 Porphyromonas gingivalis W83 2552179 NP_905296.1 CDS ackA NC_002950.2 1148521 1149717 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1148521..1149717) Porphyromonas gingivalis W83 2552177 NP_905297.1 CDS pta NC_002950.2 1149763 1150773 R similar to GB:U00039, SP:P28242, GB:X67639, PID:43280, PID:466632, GB:U00096, and PID:1789909; identified by sequence similarity; putative; phosphotransacetylase complement(1149763..1150773) Porphyromonas gingivalis W83 2552173 NP_905298.1 CDS PG1083 NC_002950.2 1150983 1151924 R hypothetical protein complement(1150983..1151924) Porphyromonas gingivalis W83 2553373 NP_905299.1 CDS PG1084 NC_002950.2 1151972 1153048 R thioredoxin family protein complement(1151972..1153048) Porphyromonas gingivalis W83 2553357 NP_905300.1 CDS PG1085 NC_002950.2 1153343 1153591 D hypothetical protein 1153343..1153591 Porphyromonas gingivalis W83 2553365 NP_905301.1 CDS PG1087 NC_002950.2 1153945 1154880 D similar to GB:U05888, PID:458314, and SP:Q45119; identified by sequence similarity; putative; radical SAM family protein 1153945..1154880 Porphyromonas gingivalis W83 2553362 NP_905302.1 CDS PG1088 NC_002950.2 1154932 1155516 R acetyltransferase complement(1154932..1155516) Porphyromonas gingivalis W83 2553360 NP_905303.1 CDS rprY NC_002950.2 1155613 1156350 R similar to GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, PID:484051, GB:L27624, GB:D29992, SP:P48307, PID:2078462, PID:441150, and PID:484051; identified by sequence similarity; putative; DNA-binding response regulator RprY complement(1155613..1156350) Porphyromonas gingivalis W83 2553358 NP_905304.1 CDS PG1091 NC_002950.2 1157157 1158152 D similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; DHH subfamily 1 protein 1157157..1158152 Porphyromonas gingivalis W83 2553359 NP_905305.1 CDS PG1093 NC_002950.2 1158261 1158839 D hypothetical protein 1158261..1158839 Porphyromonas gingivalis W83 2553353 NP_905306.1 CDS pgm NC_002950.2 1158893 1160281 D similar to SP:P00321; identified by sequence similarity; putative; phosphomannomutase 1158893..1160281 Porphyromonas gingivalis W83 2553355 NP_905307.1 CDS PG1095 NC_002950.2 1160365 1161762 D RNA methyltransferase 1160365..1161762 Porphyromonas gingivalis W83 2553344 NP_905308.1 CDS PG1096 NC_002950.2 1161979 1163061 D hypothetical protein 1161979..1163061 Porphyromonas gingivalis W83 2553352 NP_905309.1 CDS PG1097 NC_002950.2 1163097 1165568 D putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase 1163097..1165568 Porphyromonas gingivalis W83 2553350 NP_905310.1 CDS PG1098 NC_002950.2 1165876 1167099 R hypothetical protein complement(1165876..1167099) Porphyromonas gingivalis W83 2553349 NP_905311.1 CDS murQ NC_002950.2 1167434 1168258 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(1167434..1168258) Porphyromonas gingivalis W83 2553343 NP_905312.1 CDS PG1100 NC_002950.2 1168251 1169102 R hypothetical protein complement(1168251..1169102) Porphyromonas gingivalis W83 2553337 NP_905313.1 CDS PG1101 NC_002950.2 1169099 1170559 R sodium:solute symporter family protein complement(1169099..1170559) Porphyromonas gingivalis W83 2553338 NP_905314.1 CDS PG1102 NC_002950.2 1170950 1173727 R hypothetical protein complement(1170950..1173727) Porphyromonas gingivalis W83 2553332 NP_905315.1 CDS PG1103 NC_002950.2 1173745 1175049 D recombination factor protein RarA 1173745..1175049 Porphyromonas gingivalis W83 2553315 NP_905316.1 CDS PG1104 NC_002950.2 1175075 1175842 D similar to GB:L19999, GB:L19955, GB:X84654, GB:L15346, GB:U72196, SP:P50224, SP:P50225, SP:P50226, PID:1314740, PID:1575788, PID:179042, PID:1907312, PID:306455, PID:307343, PID:488285, PID:495487, PID:553649, PID:671534, PID:671642, PID:736379, PID:758595, PID:758597, PID:847763, PID:881503, and PID:881505; identified by sequence similarity; putative; hypothetical protein 1175075..1175842 Porphyromonas gingivalis W83 2553335 NP_905317.1 CDS rpoN NC_002950.2 1175806 1177263 R RNA polymerase sigma-54 factor complement(1175806..1177263) Porphyromonas gingivalis W83 2553336 NP_905318.1 CDS murF NC_002950.2 1177257 1178519 R similar to GB:X64229, SP:P35659, and PID:30503; identified by sequence similarity; putative; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase complement(1177257..1178519) Porphyromonas gingivalis W83 2553321 NP_905319.1 CDS PG1107 NC_002950.2 1178900 1180309 D hypothetical protein 1178900..1180309 Porphyromonas gingivalis W83 2553334 NP_905320.1 CDS PG1108 NC_002950.2 1180797 1181198 R hypothetical protein complement(1180797..1181198) Porphyromonas gingivalis W83 2553333 NP_905321.1 CDS PG1109 NC_002950.2 1181515 1182882 R mobilization protein complement(1181515..1182882) Porphyromonas gingivalis W83 2553329 NP_905322.1 CDS PG1110 NC_002950.2 1182881 1183297 D hypothetical protein 1182881..1183297 Porphyromonas gingivalis W83 2553327 NP_905323.1 CDS PG1112 NC_002950.2 1185143 1185631 D hypothetical protein 1185143..1185631 Porphyromonas gingivalis W83 2553323 NP_905324.1 CDS PG1113 NC_002950.2 1185613 1186836 R integrase complement(1185613..1186836) Porphyromonas gingivalis W83 2553320 NP_905325.1 CDS panD NC_002950.2 1187177 1187533 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1187177..1187533 Porphyromonas gingivalis W83 2553319 NP_905326.1 CDS ffh NC_002950.2 1187610 1188947 D similar to GB:M82827, GB:X56058, SP:P29590, SP:P29591, SP:P29592, SP:P29593, SP:Q00755, and PID:182796; identified by sequence similarity; putative; signal recognition particle protein 1187610..1188947 Porphyromonas gingivalis W83 2553318 NP_905327.1 CDS folD NC_002950.2 1189071 1189961 D catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1189071..1189961 Porphyromonas gingivalis W83 2553317 NP_905328.1 CDS PG1117 NC_002950.2 1190150 1191601 D MATE efflux family protein 1190150..1191601 Porphyromonas gingivalis W83 2553316 NP_905329.1 CDS clpB NC_002950.2 1192173 1194764 R clpB protein complement(1192173..1194764) Porphyromonas gingivalis W83 2553313 NP_905330.1 CDS PG1119 NC_002950.2 1194983 1195543 D flavodoxin 1194983..1195543 Porphyromonas gingivalis W83 2553314 NP_905331.1 CDS asnC NC_002950.2 1196236 1197645 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(1196236..1197645) Porphyromonas gingivalis W83 2553310 NP_905332.1 CDS purB NC_002950.2 1199097 1200440 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1199097..1200440) Porphyromonas gingivalis W83 2553308 NP_905333.1 CDS PG1124 NC_002950.2 1200575 1201126 R ATP:cob(I)alamin adenosyltransferase complement(1200575..1201126) Porphyromonas gingivalis W83 2553309 NP_905334.1 CDS PG1125 NC_002950.2 1201161 1201817 R hypothetical protein complement(1201161..1201817) Porphyromonas gingivalis W83 2553306 NP_905335.1 CDS uraA NC_002950.2 1201836 1203023 R uracil permease complement(1201836..1203023) Porphyromonas gingivalis W83 2553378 NP_905336.1 CDS PG1127 NC_002950.2 1203363 1203830 D similar to GB:J03407, SP:P14373, PID:1903190, PID:337372, GB:X07282, SP:P10826, PID:184477, PID:32026, and PID:35883; identified by sequence similarity; putative; AsnC family transcriptional regulator 1203363..1203830 Porphyromonas gingivalis W83 2553307 NP_905337.1 CDS xseA NC_002950.2 1203877 1205259 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1203877..1205259 Porphyromonas gingivalis W83 2553330 NP_905338.1 CDS nrd NC_002950.2 1205538 1208090 D similar to SP:P27298, GB:M93984, PID:451277, PID:466635, GB:U00096, PID:1789913, GB:M57894, SP:P29072, PID:142685, and GB:AL009126; identified by sequence similarity; putative; ribonucleotide reductase 1205538..1208090 Porphyromonas gingivalis W83 2553305 NP_905339.1 CDS PG1130 NC_002950.2 1208193 1210190 D hypothetical protein 1208193..1210190 Porphyromonas gingivalis W83 2553115 NP_905340.1 CDS valS NC_002950.2 1211052 1213682 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1211052..1213682 Porphyromonas gingivalis W83 2552161 NP_905341.1 CDS PG1133 NC_002950.2 1213711 1214163 D hypothetical protein 1213711..1214163 Porphyromonas gingivalis W83 2553193 NP_905342.1 CDS trxB NC_002950.2 1214490 1215431 D thioredoxin reductase 1214490..1215431 Porphyromonas gingivalis W83 2552139 NP_905343.1 CDS PG1135 NC_002950.2 1216000 1216614 D identified by match to PFAM protein family HMM PF02397; sugar transferase 1216000..1216614 Porphyromonas gingivalis W83 2552141 NP_905344.1 CDS PG1136 NC_002950.2 1216789 1218417 R similar to GP:18892817; identified by sequence similarity; putative; hypothetical protein complement(1216789..1218417) Porphyromonas gingivalis W83 2552118 NP_905345.1 CDS porS NC_002950.2 1218380 1219687 R identified by match to TIGR protein family HMM TIGR01695; porS protein complement(1218380..1219687) Porphyromonas gingivalis W83 2553369 NP_905346.1 CDS porR NC_002950.2 1219684 1220838 R pigmentation and extracellular proteinase regulator complement(1219684..1220838) Porphyromonas gingivalis W83 2553217 NP_905347.1 CDS PG1139 NC_002950.2 1221018 1222154 R hypothetical protein complement(1221018..1222154) Porphyromonas gingivalis W83 2553368 NP_905348.1 CDS PG1140 NC_002950.2 1222265 1223125 R identified by match to TIGR protein family HMM TIGR01556; glycosyl transferase group 2 family protein complement(1222265..1223125) Porphyromonas gingivalis W83 2552183 NP_905349.1 CDS PG1141 NC_002950.2 1223131 1224324 R glycosyl transferase complement(1223131..1224324) Porphyromonas gingivalis W83 2552168 NP_905350.1 CDS PG1142 NC_002950.2 1224661 1225569 R exopolysaccharide synthesis-like protein complement(1224661..1225569) Porphyromonas gingivalis W83 2553286 NP_905351.1 CDS PG1143 NC_002950.2 1225720 1227288 R sugar dehydrogenase complement(1225720..1227288) Porphyromonas gingivalis W83 2553294 NP_905352.1 CDS PG1145 NC_002950.2 1228572 1230395 R similar to GB:Z25430, and PID:405739; identified by sequence similarity; putative; long-chain-fatty-acid--CoA ligase complement(1228572..1230395) Porphyromonas gingivalis W83 2553291 NP_905353.1 CDS PG1148 NC_002950.2 1231344 1231436 D hypothetical protein 1231344..1231436 Porphyromonas gingivalis W83 2553290 NP_905354.1 CDS PG1149 NC_002950.2 1231782 1232909 D similar to GB:U04847, and PID:440240; identified by sequence similarity; putative; glycosyl transferase 1231782..1232909 Porphyromonas gingivalis W83 2553289 NP_905355.1 CDS PG1150 NC_002950.2 1233046 1233309 D hypothetical protein 1233046..1233309 Porphyromonas gingivalis W83 2553287 NP_905356.1 CDS PG1151 NC_002950.2 1233290 1234438 D iron-containing alcohol dehydrogenase 1233290..1234438 Porphyromonas gingivalis W83 2553288 NP_905357.1 CDS PG1152 NC_002950.2 1234764 1235036 R hypothetical protein complement(1234764..1235036) Porphyromonas gingivalis W83 2553257 NP_905358.1 CDS PG1153 NC_002950.2 1235066 1235779 R hypothetical protein complement(1235066..1235779) Porphyromonas gingivalis W83 2553283 NP_905359.1 CDS PG1154 NC_002950.2 1235787 1235915 R hypothetical protein complement(1235787..1235915) Porphyromonas gingivalis W83 2553282 NP_905360.1 CDS PG1155 NC_002950.2 1236001 1236891 D ADP-heptose--LPS heptosyltransferase 1236001..1236891 Porphyromonas gingivalis W83 2553281 NP_905361.1 CDS PG1156 NC_002950.2 1236875 1237327 D S4 domain-containing protein 1236875..1237327 Porphyromonas gingivalis W83 2553277 NP_905362.1 CDS cbiB NC_002950.2 1238047 1239057 R cobalamin biosynthesis protein CbiB complement(1238047..1239057) Porphyromonas gingivalis W83 2553276 NP_905363.1 CDS PG1160 NC_002950.2 1239071 1240078 R similar to GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, PID:1786365, GB:D26562, SP:P02351, GB:V00343, PID:42842, PID:473824, GB:U00096, PID:1552746, and PID:1786365; identified by sequence similarity; putative; L-threonine-O-3-phosphate decarboxylase complement(1239071..1240078) Porphyromonas gingivalis W83 2553275 NP_905364.1 CDS PG1162 NC_002950.2 1241563 1242129 R similar to GB:X63125, PID:402789, GB:X63125, and PID:402789; identified by sequence similarity; putative; ATP:cob(I)alamin adenosyltransferase complement(1241563..1242129) Porphyromonas gingivalis W83 2553270 NP_905365.1 CDS cbiA NC_002950.2 1242152 1243471 R cobyrinic acid a,c-diamide synthase complement(1242152..1243471) Porphyromonas gingivalis W83 2553267 NP_905366.1 CDS PG1164 NC_002950.2 1244197 1247604 R hypothetical protein complement(1244197..1247604) Porphyromonas gingivalis W83 2553265 NP_905367.1 CDS PG1165 NC_002950.2 1247601 1248317 R hypothetical protein complement(1247601..1248317) Porphyromonas gingivalis W83 2553266 NP_905368.1 CDS PG1166 NC_002950.2 1248390 1248533 R hypothetical protein complement(1248390..1248533) Porphyromonas gingivalis W83 2553263 NP_905369.1 CDS PG1167 NC_002950.2 1248567 1248704 D hypothetical protein 1248567..1248704 Porphyromonas gingivalis W83 2553262 NP_905370.1 CDS PG1169 NC_002950.2 1249173 1249271 R hypothetical protein complement(1249173..1249271) Porphyromonas gingivalis W83 2552150 NP_905371.1 CDS PG1170 NC_002950.2 1249303 1250175 D similar to SP:P33107, and PID:44436; identified by sequence similarity; putative; SerB family protein 1249303..1250175 Porphyromonas gingivalis W83 2552142 NP_905372.1 CDS PG1171 NC_002950.2 1250495 1251235 D identified by match to PFAM protein family HMM PF02754; oxidoreductase 1250495..1251235 Porphyromonas gingivalis W83 2552157 NP_905373.1 CDS PG1172 NC_002950.2 1251313 1252599 D iron-sulfur cluster binding protein 1251313..1252599 Porphyromonas gingivalis W83 2552155 NP_905374.1 CDS PG1173 NC_002950.2 1252575 1253189 D identified by match to PFAM protein family HMM PF02589; hypothetical protein 1252575..1253189 Porphyromonas gingivalis W83 2552154 NP_905375.1 CDS PG1174 NC_002950.2 1253300 1253797 R thioesterase complement(1253300..1253797) Porphyromonas gingivalis W83 2552152 NP_905376.1 CDS PG1175 NC_002950.2 1254260 1255966 R ABC transporter ATP-binding protein complement(1254260..1255966) Porphyromonas gingivalis W83 2553258 NP_905377.1 CDS PG1176 NC_002950.2 1256013 1257734 R ABC transporter ATP-binding protein complement(1256013..1257734) Porphyromonas gingivalis W83 2553261 NP_905378.1 CDS PG1177 NC_002950.2 1257884 1258969 R ISPg1, transposase complement(1257884..1258969) Porphyromonas gingivalis W83 2553253 NP_905379.1 CDS PG1178 NC_002950.2 1259150 1260427 R hypothetical protein complement(1259150..1260427) Porphyromonas gingivalis W83 2553254 NP_905380.1 CDS PG1179 NC_002950.2 1260431 1261222 R hypothetical protein complement(1260431..1261222) Porphyromonas gingivalis W83 2553251 NP_905381.1 CDS PG1180 NC_002950.2 1261300 1263705 R similar to SP:P19371; identified by sequence similarity; putative; hypothetical protein complement(1261300..1263705) Porphyromonas gingivalis W83 2553252 NP_905382.1 CDS PG1181 NC_002950.2 1263746 1264345 R TetR family transcriptional regulator complement(1263746..1264345) Porphyromonas gingivalis W83 2553247 NP_905383.1 CDS PG1184 NC_002950.2 1265425 1266960 R alginate O-acetyltransferase complement(1265425..1266960) Porphyromonas gingivalis W83 2553246 NP_905384.1 CDS PG1185 NC_002950.2 1266982 1267842 R hypothetical protein complement(1266982..1267842) Porphyromonas gingivalis W83 2553243 NP_905385.1 CDS PG1186 NC_002950.2 1267793 1269241 R hypothetical protein complement(1267793..1269241) Porphyromonas gingivalis W83 2553240 NP_905386.1 CDS PG1189 NC_002950.2 1270132 1272012 D hypothetical protein 1270132..1272012 Porphyromonas gingivalis W83 2553244 NP_905387.1 CDS hprA NC_002950.2 1272252 1273205 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 1272252..1273205 Porphyromonas gingivalis W83 2553239 NP_905388.1 CDS bioF-2 NC_002950.2 1274119 1275267 D catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 1274119..1275267 Porphyromonas gingivalis W83 2553236 NP_905389.1 CDS PG1196 NC_002950.2 1275267 1275419 D hypothetical protein 1275267..1275419 Porphyromonas gingivalis W83 2553242 NP_905390.1 CDS PG1197 NC_002950.2 1275565 1276650 R ISPg1, transposase complement(1275565..1276650) Porphyromonas gingivalis W83 2553235 NP_905391.1 CDS PG1198 NC_002950.2 1276790 1277029 D hypothetical protein 1276790..1277029 Porphyromonas gingivalis W83 2553232 NP_905392.1 CDS PG1199 NC_002950.2 1277033 1277458 D hypothetical protein 1277033..1277458 Porphyromonas gingivalis W83 2553233 NP_905393.1 CDS PG1200 NC_002950.2 1277570 1278082 R hypothetical protein complement(1277570..1278082) Porphyromonas gingivalis W83 2553230 NP_905394.1 CDS PG1202 NC_002950.2 1279682 1283104 R hypothetical protein complement(1279682..1283104) Porphyromonas gingivalis W83 2553227 NP_905395.1 CDS PG1203 NC_002950.2 1283327 1283536 R identified by match to PFAM protein family HMM PF01381; transcriptional regulator complement(1283327..1283536) Porphyromonas gingivalis W83 2553226 NP_905396.1 CDS PG1205 NC_002950.2 1284093 1284563 D identified by match to PFAM protein family HMM PF00216; histone-like family DNA-binding protein 1284093..1284563 Porphyromonas gingivalis W83 2553225 NP_905397.1 CDS PG1206 NC_002950.2 1284649 1284870 R hypothetical protein complement(1284649..1284870) Porphyromonas gingivalis W83 2553224 NP_905398.1 CDS PG1207 NC_002950.2 1284863 1285021 R hypothetical protein complement(1284863..1285021) Porphyromonas gingivalis W83 2553223 NP_905399.1 CDS dnaK NC_002950.2 1285083 1287005 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1285083..1287005) Porphyromonas gingivalis W83 2553221 NP_905400.1 CDS PG1209 NC_002950.2 1287585 1289135 D hypothetical protein 1287585..1289135 Porphyromonas gingivalis W83 2553377 NP_905401.1 CDS PG1210 NC_002950.2 1289184 1290971 D M24 family peptidase 1289184..1290971 Porphyromonas gingivalis W83 2552190 NP_905402.1 CDS PG1211 NC_002950.2 1290941 1291519 D similar to GB:Z36940, SP:P45492, and PID:535813; identified by sequence similarity; putative; hexapeptide transferase 1290941..1291519 Porphyromonas gingivalis W83 2552175 NP_905403.1 CDS PG1212 NC_002950.2 1291532 1292545 D hypothetical protein 1291532..1292545 Porphyromonas gingivalis W83 2553366 NP_905404.1 CDS rnhA NC_002950.2 1292573 1293223 D identified by match to PFAM protein family HMM PF00075; ribonuclease H 1292573..1293223 Porphyromonas gingivalis W83 2553213 NP_905405.1 CDS PG1214 NC_002950.2 1293172 1294410 D hypothetical protein 1293172..1294410 Porphyromonas gingivalis W83 2553120 NP_905406.1 CDS PG1215 NC_002950.2 1294761 1295573 D lipoprotein 1294761..1295573 Porphyromonas gingivalis W83 2553125 NP_905407.1 CDS PG1216 NC_002950.2 1295570 1295725 D hypothetical protein 1295570..1295725 Porphyromonas gingivalis W83 2553123 NP_905408.1 CDS PG1217 NC_002950.2 1295715 1296047 D hypothetical protein 1295715..1296047 Porphyromonas gingivalis W83 2553124 NP_905409.1 CDS PG1218 NC_002950.2 1296077 1296535 D hypothetical protein 1296077..1296535 Porphyromonas gingivalis W83 2552116 NP_905410.1 CDS PG1219 NC_002950.2 1296811 1297122 D hypothetical protein 1296811..1297122 Porphyromonas gingivalis W83 2552115 NP_905411.1 CDS PG1220 NC_002950.2 1297126 1298259 D Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 1297126..1298259 Porphyromonas gingivalis W83 2552114 NP_905412.1 CDS PG1221 NC_002950.2 1298269 1298994 D similar to GB:X74801, GB:U17104, SP:P49368, PID:609308, and PID:671527; identified by sequence similarity; putative; short chain dehydrogenase/reductase oxidoreductase 1298269..1298994 Porphyromonas gingivalis W83 2552113 NP_905413.1 CDS PG1222 NC_002950.2 1299165 1299482 R hypothetical protein complement(1299165..1299482) Porphyromonas gingivalis W83 2552112 NP_905414.1 CDS PG1223 NC_002950.2 1299601 1299804 D hypothetical protein 1299601..1299804 Porphyromonas gingivalis W83 2552110 NP_905415.1 CDS PG1225 NC_002950.2 1301525 1303396 D identified by match to TIGR protein family HMM TIGR01716; ABC transporter ATP-binding protein 1301525..1303396 Porphyromonas gingivalis W83 2552108 NP_905416.1 CDS PG1226 NC_002950.2 1303404 1304108 D cyclophilin type peptidyl-prolyl cis-trans isomerase 1303404..1304108 Porphyromonas gingivalis W83 2552106 NP_905417.1 CDS PG1229 NC_002950.2 1305649 1305942 R hypothetical protein complement(1305649..1305942) Porphyromonas gingivalis W83 2552104 NP_905418.1 CDS PG1230 NC_002950.2 1306050 1308158 R hypothetical protein complement(1306050..1308158) Porphyromonas gingivalis W83 2553198 NP_905419.1 CDS gdh NC_002950.2 1308364 1309701 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADH; forms a homohexamer; glutamate dehydrogenase complement(1308364..1309701) Porphyromonas gingivalis W83 2553197 NP_905420.1 CDS PG1233 NC_002950.2 1310025 1310135 D hypothetical protein 1310025..1310135 Porphyromonas gingivalis W83 2552134 NP_905421.1 CDS PG1234 NC_002950.2 1310252 1310380 D hypothetical protein 1310252..1310380 Porphyromonas gingivalis W83 2552131 NP_905422.1 CDS PG1235 NC_002950.2 1310390 1311346 R epimerase/reductase complement(1310390..1311346) Porphyromonas gingivalis W83 2552132 NP_905423.1 CDS PG1236 NC_002950.2 1311662 1312372 D hypothetical protein 1311662..1312372 Porphyromonas gingivalis W83 2552129 NP_905424.1 CDS PG1237 NC_002950.2 1312369 1312968 D LuxR family transcriptional regulator 1312369..1312968 Porphyromonas gingivalis W83 2552125 NP_905425.1 CDS fabG NC_002950.2 1313713 1314459 R similar to SP:P25921, and PID:150653; identified by sequence similarity; putative; 3-oxoacyl-ACP reductase complement(1313713..1314459) Porphyromonas gingivalis W83 2553192 NP_905426.1 CDS PG1240 NC_002950.2 1314543 1315151 R TetR family transcriptional regulator complement(1314543..1315151) Porphyromonas gingivalis W83 2553191 NP_905427.1 CDS lepA NC_002950.2 1315753 1317540 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1315753..1317540 Porphyromonas gingivalis W83 2553188 NP_905428.1 CDS dnaB NC_002950.2 1317575 1319161 D replicative DNA helicase 1317575..1319161 Porphyromonas gingivalis W83 2553187 NP_905429.1 CDS PG1244 NC_002950.2 1319674 1320759 D ISPg1, transposase 1319674..1320759 Porphyromonas gingivalis W83 2553183 NP_905430.1 CDS alaS NC_002950.2 1321939 1324569 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1321939..1324569 Porphyromonas gingivalis W83 2553302 NP_905431.1 CDS aroB NC_002950.2 1324584 1325645 D similar to GB:Z22606, PID:405799, and SP:P50001; identified by sequence similarity; putative; 3-dehydroquinate synthase 1324584..1325645 Porphyromonas gingivalis W83 2553182 NP_905432.1 CDS PG1248 NC_002950.2 1325891 1326622 R hypothetical protein complement(1325891..1326622) Porphyromonas gingivalis W83 2553181 NP_905433.1 CDS PG1249 NC_002950.2 1326637 1327251 R identified by match to TIGR protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(1326637..1327251) Porphyromonas gingivalis W83 2553179 NP_905434.1 CDS PG1250 NC_002950.2 1327274 1327936 R hypothetical protein complement(1327274..1327936) Porphyromonas gingivalis W83 2553153 NP_905435.1 CDS PG1251 NC_002950.2 1327919 1328272 D hypothetical protein 1327919..1328272 Porphyromonas gingivalis W83 2553177 NP_905436.1 CDS PG1252 NC_002950.2 1328439 1329674 R similar to GB:Z33058, and PID:530419; identified by sequence similarity; putative; hypothetical protein complement(1328439..1329674) Porphyromonas gingivalis W83 2553173 NP_905437.1 CDS ligA NC_002950.2 1329687 1331696 R NAD-dependent DNA ligase complement(1329687..1331696) Porphyromonas gingivalis W83 2553175 NP_905438.1 CDS PG1254 NC_002950.2 1331684 1332211 R acetyltransferase complement(1331684..1332211) Porphyromonas gingivalis W83 2553157 NP_905439.1 CDS recR NC_002950.2 1332218 1332841 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1332218..1332841) Porphyromonas gingivalis W83 2553145 NP_905440.1 CDS PG1256 NC_002950.2 1332838 1334352 R ribonuclease complement(1332838..1334352) Porphyromonas gingivalis W83 2552186 NP_905441.1 CDS PG1257 NC_002950.2 1334551 1334643 R hypothetical protein complement(1334551..1334643) Porphyromonas gingivalis W83 2552185 NP_905442.1 CDS hup-2 NC_002950.2 1334674 1334952 R similar to GB:L05425, PID:179285, GB:L05425, and PID:179285; identified by sequence similarity; putative; DNA-binding protein HU complement(1334674..1334952) Porphyromonas gingivalis W83 2553220 NP_905443.1 CDS nrdG NC_002950.2 1335064 1335555 R anaerobic ribonucleoside-triphosphate reductase activating protein complement(1335064..1335555) Porphyromonas gingivalis W83 2553152 NP_905444.1 CDS PG1260 NC_002950.2 1335588 1337984 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(1335588..1337984) Porphyromonas gingivalis W83 2553161 NP_905445.1 CDS PG1261 NC_002950.2 1338511 1339668 D ISPg4, transposase 1338511..1339668 Porphyromonas gingivalis W83 2553162 NP_905446.1 CDS PG1262 NC_002950.2 1339822 1340724 R ISPg3, transposase complement(1339822..1340724) Porphyromonas gingivalis W83 2553164 NP_905447.1 CDS PG1264 NC_002950.2 1344830 1344985 R hypothetical protein complement(1344830..1344985) Porphyromonas gingivalis W83 2553136 NP_905448.1 CDS PG1265 NC_002950.2 1345114 1345272 R hypothetical protein complement(1345114..1345272) Porphyromonas gingivalis W83 2552138 NP_905449.1 CDS PG1266 NC_002950.2 1346859 1347077 R hypothetical protein complement(1346859..1347077) Porphyromonas gingivalis W83 2553129 NP_905450.1 CDS PG1267 NC_002950.2 1347106 1347273 D hypothetical protein 1347106..1347273 Porphyromonas gingivalis W83 2553130 NP_905451.1 CDS PG1268 NC_002950.2 1347511 1347609 D hypothetical protein 1347511..1347609 Porphyromonas gingivalis W83 2553156 NP_905452.1 CDS pruA NC_002950.2 1347660 1349291 R similar to GB:X67475, PID:42342, SP:P24185, GB:U00096, PID:1742409, PID:1742419, and PID:1787750; identified by sequence similarity; putative; delta-1-pyrroline-5-carboxylate dehydrogenase complement(1347660..1349291) Porphyromonas gingivalis W83 2553160 NP_905453.1 CDS PG1270 NC_002950.2 1349368 1350297 R identified by match to PFAM protein family HMM PF02274; hypothetical protein complement(1349368..1350297) Porphyromonas gingivalis W83 2553132 NP_905454.1 CDS PG1271 NC_002950.2 1350304 1351533 R similar to GB:L06132, SP:P21796, and PID:340199; identified by sequence similarity; putative; acetylornithine aminotransferase complement(1350304..1351533) Porphyromonas gingivalis W83 2553146 NP_905455.1 CDS PG1273 NC_002950.2 1351772 1351927 R hypothetical protein complement(1351772..1351927) Porphyromonas gingivalis W83 2553172 NP_905456.1 CDS efp-2 NC_002950.2 1351983 1352549 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1351983..1352549 Porphyromonas gingivalis W83 2553135 NP_905457.1 CDS PG1276 NC_002950.2 1353085 1353591 D identified by match to PFAM protein family HMM PF00216; histone-like family DNA-binding protein 1353085..1353591 Porphyromonas gingivalis W83 2553154 NP_905458.1 CDS PG1277 NC_002950.2 1353894 1355159 D UDP-glucose-6 dehydrogenase 1353894..1355159 Porphyromonas gingivalis W83 2553211 NP_905459.1 CDS serC NC_002950.2 1355492 1356574 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1355492..1356574 Porphyromonas gingivalis W83 2553159 NP_905460.1 CDS PG1279 NC_002950.2 1356675 1357595 D D-isomer specific 2-hydroxyacid dehydrogenase 1356675..1357595 Porphyromonas gingivalis W83 2553140 NP_905461.1 CDS PG1280 NC_002950.2 1357614 1358861 D hypothetical protein 1357614..1358861 Porphyromonas gingivalis W83 2553166 NP_905462.1 CDS PG1281 NC_002950.2 1358988 1360151 D hypothetical protein 1358988..1360151 Porphyromonas gingivalis W83 2553376 NP_905463.1 CDS PG1282 NC_002950.2 1360175 1360630 D similar to GB:U22662, and PID:726513; identified by sequence similarity; putative; hypothetical protein 1360175..1360630 Porphyromonas gingivalis W83 2553170 NP_905464.1 CDS PG1283 NC_002950.2 1360693 1362855 D hypothetical protein 1360693..1362855 Porphyromonas gingivalis W83 2553138 NP_905465.1 CDS PG1285 NC_002950.2 1363034 1365001 D glucosamine-6-phosphate deaminase 1363034..1365001 Porphyromonas gingivalis W83 2551729 NP_905466.1 CDS ftn NC_002950.2 1365109 1365591 R ferritin complement(1365109..1365591) Porphyromonas gingivalis W83 2551792 NP_905467.1 CDS gmd NC_002950.2 1366103 1367188 D GDP-mannose 4,6-dehydratase 1366103..1367188 Porphyromonas gingivalis W83 2551440 NP_905468.1 CDS fcl NC_002950.2 1367181 1368254 D GDP-fucose synthetase 1367181..1368254 Porphyromonas gingivalis W83 2551723 NP_905469.1 CDS ilvE NC_002950.2 1368393 1369412 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1368393..1369412 Porphyromonas gingivalis W83 2551658 NP_905470.1 CDS PG1291 NC_002950.2 1369541 1371268 R hypothetical protein complement(1369541..1371268) Porphyromonas gingivalis W83 2551566 NP_905471.1 CDS feoB-2 NC_002950.2 1372187 1374721 D ferrous iron transport protein B 1372187..1374721 Porphyromonas gingivalis W83 2551867 NP_905472.1 CDS PG1296 NC_002950.2 1374934 1375389 D hypothetical protein 1374934..1375389 Porphyromonas gingivalis W83 2551722 NP_905473.1 CDS rpsA NC_002950.2 1375971 1377770 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1375971..1377770 Porphyromonas gingivalis W83 2551856 NP_905474.1 CDS PG1300 NC_002950.2 1378620 1379159 R hypothetical protein complement(1378620..1379159) Porphyromonas gingivalis W83 2551865 NP_905475.1 CDS PG1301 NC_002950.2 1379196 1380011 R hypothetical protein complement(1379196..1380011) Porphyromonas gingivalis W83 2551846 NP_905476.1 CDS PG1302 NC_002950.2 1380029 1380727 R identified by match to TIGR protein family HMM TIGR01707; hypothetical protein complement(1380029..1380727) Porphyromonas gingivalis W83 2551644 NP_905477.1 CDS PG1303 NC_002950.2 1380792 1382207 D similar to GB:M67471, SP:P25146, PID:149674, PID:887026, PID:887868, PID:887874, SP:P23462, and PID:152000; identified by sequence similarity; putative; helicase 1380792..1382207 Porphyromonas gingivalis W83 2551884 NP_905478.1 CDS PG1304 NC_002950.2 1382224 1383564 R hypothetical protein complement(1382224..1383564) Porphyromonas gingivalis W83 2551550 NP_905479.1 CDS gcvP NC_002950.2 1383761 1386628 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1383761..1386628) Porphyromonas gingivalis W83 2551882 NP_905480.1 CDS PG1306 NC_002950.2 1386633 1387277 R metallo-beta-lactamase complement(1386633..1387277) Porphyromonas gingivalis W83 2551809 NP_905481.1 CDS gidB NC_002950.2 1387274 1387939 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(1387274..1387939) Porphyromonas gingivalis W83 2551453 NP_905482.1 CDS PG1308 NC_002950.2 1387973 1388818 R hypothetical protein complement(1387973..1388818) Porphyromonas gingivalis W83 2551812 NP_905483.1 CDS PG1310 NC_002950.2 1389224 1389886 D exsB protein 1389224..1389886 Porphyromonas gingivalis W83 2551879 NP_905484.1 CDS PG1311 NC_002950.2 1389849 1390415 D identified by match to PFAM protein family HMM PF00149; hypothetical protein 1389849..1390415 Porphyromonas gingivalis W83 2551989 NP_905485.1 CDS PG1312 NC_002950.2 1390426 1391613 D capA protein 1390426..1391613 Porphyromonas gingivalis W83 2551864 NP_905486.1 CDS PG1313 NC_002950.2 1392422 1394080 D dipeptidase-like protein 1392422..1394080 Porphyromonas gingivalis W83 2551818 NP_905487.1 CDS aroC NC_002950.2 1394452 1395558 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1394452..1395558) Porphyromonas gingivalis W83 2551821 NP_905488.1 CDS slyD NC_002950.2 1395708 1396280 R similar to GB:L19084, SP:P33668, PID:304942, GB:U00096, PID:1773180, PID:1786707, GB:D90277, GB:L00692, GB:M22433, GB:L00693, GB:D90278, SP:P40198, PID:219537, and PID:553220; identified by sequence similarity; putative; peptidyl-prolyl cis-trans isomerase SlyD complement(1395708..1396280) Porphyromonas gingivalis W83 2551720 NP_905489.1 CDS PG1316 NC_002950.2 1396331 1396861 R hypothetical protein complement(1396331..1396861) Porphyromonas gingivalis W83 2551716 NP_905490.1 CDS PG1317 NC_002950.2 1396834 1397244 R hypothetical protein complement(1396834..1397244) Porphyromonas gingivalis W83 2551545 NP_905491.1 CDS PG1318 NC_002950.2 1397292 1397858 R identified by match to PFAM protein family HMM PF04545; ECF subfamily RNA polymerase sigma factor complement(1397292..1397858) Porphyromonas gingivalis W83 2551636 NP_905492.1 CDS PG1320 NC_002950.2 1398892 1399527 D ISPg1, transposase, internal deletion 1398892..1399527 Porphyromonas gingivalis W83 2551975 NP_905493.1 CDS fhs NC_002950.2 1399746 1401413 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1399746..1401413) Porphyromonas gingivalis W83 2551977 NP_905494.1 CDS PG1323 NC_002950.2 1401570 1402904 D PhoH family protein 1401570..1402904 Porphyromonas gingivalis W83 2551982 NP_905495.1 CDS ruvC NC_002950.2 1402952 1403521 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1402952..1403521) Porphyromonas gingivalis W83 2551993 NP_905496.1 CDS PG1325 NC_002950.2 1403594 1403968 R hypothetical protein complement(1403594..1403968) Porphyromonas gingivalis W83 2551899 NP_905497.1 CDS PG1326 NC_002950.2 1404173 1405231 D similar to GP:8925307; identified by sequence similarity; putative; hemagglutinin 1404173..1405231 Porphyromonas gingivalis W83 2551449 NP_905498.1 CDS PG1327 NC_002950.2 1405360 1406670 R aminotransferase complement(1405360..1406670) Porphyromonas gingivalis W83 2551980 NP_905499.1 CDS PG1328 NC_002950.2 1406713 1408770 R similar to SP:P32673, GB:U00006, PID:396297, GB:U00096, and PID:1790387; identified by sequence similarity; putative; CoA ligase complement(1406713..1408770) Porphyromonas gingivalis W83 2551657 NP_905500.1 CDS mscL NC_002950.2 1409806 1410225 D large conductance mechanosensitive channel protein 1409806..1410225 Porphyromonas gingivalis W83 2551872 NP_905501.1 CDS pntB NC_002950.2 1412182 1414170 D similar to SP:P35633, GB:L20677, PID:304185, GB:L15189, GB:L11066, GB:D17027, GB:D17196, SP:P38646, and PID:292059; identified by sequence similarity; putative; NAD(P) transhydrogenase subunit beta 1412182..1414170 Porphyromonas gingivalis W83 2551988 NP_905502.1 CDS PG1333 NC_002950.2 1414316 1415515 R hypothetical protein complement(1414316..1415515) Porphyromonas gingivalis W83 2551757 NP_905503.1 CDS PG1334 NC_002950.2 1415512 1416492 R similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; band 7/Mec-2 family protein complement(1415512..1416492) Porphyromonas gingivalis W83 2551985 NP_905504.1 CDS PG1335 NC_002950.2 1416520 1416984 R similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; hypothetical protein complement(1416520..1416984) Porphyromonas gingivalis W83 2551721 NP_905505.1 CDS umuD NC_002950.2 1417953 1418378 D similar to GB:J02933, GB:M13232, SP:P08709, PID:1000710, PID:180334, and PID:182801; identified by sequence similarity; putative; umuD protein 1417953..1418378 Porphyromonas gingivalis W83 2551994 NP_905506.1 CDS umuC NC_002950.2 1418386 1419684 D similar to GB:X13529, GB:U07236, GB:M36881, GB:X14055, SP:P06239, PID:187034, PID:34289, PID:34295, PID:349702, PID:35780, PID:460966, PID:553522, PID:775208, and PID:825687; identified by sequence similarity; putative; umuC protein 1418386..1419684 Porphyromonas gingivalis W83 2551728 NP_905507.1 CDS PG1340 NC_002950.2 1420388 1421938 R similar to SP:P00209; identified by sequence similarity; putative; L-lactate permease complement(1420388..1421938) Porphyromonas gingivalis W83 2551549 NP_905508.1 CDS PG1341 NC_002950.2 1422171 1422725 D hypothetical protein 1422171..1422725 Porphyromonas gingivalis W83 2551662 NP_905509.1 CDS murB NC_002950.2 1422725 1423741 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1422725..1423741 Porphyromonas gingivalis W83 2551534 NP_905510.1 CDS lipB NC_002950.2 1423768 1425246 D similar to SP:P33912; identified by sequence similarity; putative; lipoate-protein ligase B 1423768..1425246 Porphyromonas gingivalis W83 2551531 NP_905511.1 CDS PG1345 NC_002950.2 1425730 1426851 D glycosyl transferase 1425730..1426851 Porphyromonas gingivalis W83 2551537 NP_905512.1 CDS PG1346 NC_002950.2 1426848 1428119 D similar to GB:J03381, and SP:P10641; identified by sequence similarity; putative; glycosyl transferase 1426848..1428119 Porphyromonas gingivalis W83 2551426 NP_905513.1 CDS PG1347 NC_002950.2 1428256 1428720 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1428256..1428720 Porphyromonas gingivalis W83 2551695 NP_905514.1 CDS PG1348 NC_002950.2 1428748 1429629 D hypothetical protein 1428748..1429629 Porphyromonas gingivalis W83 2551713 NP_905515.1 CDS PG1350 NC_002950.2 1431006 1432136 D similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase 1431006..1432136 Porphyromonas gingivalis W83 2551536 NP_905516.1 CDS PG1351 NC_002950.2 1432328 1432834 R hypothetical protein complement(1432328..1432834) Porphyromonas gingivalis W83 2551702 NP_905517.1 CDS PG1352 NC_002950.2 1432827 1433240 R hypothetical protein complement(1432827..1433240) Porphyromonas gingivalis W83 2551541 NP_905518.1 CDS pyrE NC_002950.2 1433291 1433923 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1433291..1433923) Porphyromonas gingivalis W83 2551538 NP_905519.1 CDS PG1354 NC_002950.2 1434034 1434855 R carbon-nitrogen family hydrolase complement(1434034..1434855) Porphyromonas gingivalis W83 2551547 NP_905520.1 CDS PG1355 NC_002950.2 1434852 1435382 R similar to GB:J03732, SP:P03813, PID:145322, PID:882733, PID:1128956, GB:U00096, and PID:1789205; identified by sequence similarity; putative; acyltransferase complement(1434852..1435382) Porphyromonas gingivalis W83 2551542 NP_905521.1 CDS PG1356 NC_002950.2 1435451 1435939 R hypothetical protein complement(1435451..1435939) Porphyromonas gingivalis W83 2551543 NP_905522.1 CDS PG1357 NC_002950.2 1436417 1436548 R hypothetical protein complement(1436417..1436548) Porphyromonas gingivalis W83 2551554 NP_905523.1 CDS PG1358 NC_002950.2 1436743 1437423 R identified by match to PFAM protein family HMM PF00583; acetyltransferase complement(1436743..1437423) Porphyromonas gingivalis W83 2551527 NP_905524.1 CDS PG1359 NC_002950.2 1437734 1438705 R hypothetical protein complement(1437734..1438705) Porphyromonas gingivalis W83 2551711 NP_905525.1 CDS purD NC_002950.2 1438708 1440003 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(1438708..1440003) Porphyromonas gingivalis W83 2551935 NP_905526.1 CDS PG1361 NC_002950.2 1440000 1442198 R similar to GB:D31886, and PID:505100; identified by sequence similarity; putative; dipeptidyl aminopeptidase IV complement(1440000..1442198) Porphyromonas gingivalis W83 2551645 NP_905527.1 CDS PG1362 NC_002950.2 1442230 1443684 R similar to GB:M22488, GB:L35279, GB:L35278, SP:P13497, PID:619424, GB:M22488, GB:L35279, GB:L35278, SP:P13497, and PID:619424; identified by sequence similarity; putative; hypothetical protein complement(1442230..1443684) Porphyromonas gingivalis W83 2551416 NP_905528.1 CDS PG1363 NC_002950.2 1443944 1444219 D hypothetical protein 1443944..1444219 Porphyromonas gingivalis W83 2551535 NP_905529.1 CDS dxr NC_002950.2 1444478 1445635 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1444478..1445635) Porphyromonas gingivalis W83 2551565 NP_905530.1 CDS rimM NC_002950.2 1445632 1446159 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1445632..1446159) Porphyromonas gingivalis W83 2551649 NP_905531.1 CDS murA NC_002950.2 1446166 1447470 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(1446166..1447470) Porphyromonas gingivalis W83 2551563 NP_905532.1 CDS PG1367 NC_002950.2 1447501 1448103 R hypothetical protein complement(1447501..1448103) Porphyromonas gingivalis W83 2551687 NP_905533.1 CDS pgi NC_002950.2 1448123 1449460 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(1448123..1449460) Porphyromonas gingivalis W83 2551530 NP_905534.1 CDS gpsA NC_002950.2 1449493 1450497 R glycerol-3-phosphate dehydrogenase complement(1449493..1450497) Porphyromonas gingivalis W83 2551533 NP_905535.1 CDS lysS NC_002950.2 1450583 1452319 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(1450583..1452319) Porphyromonas gingivalis W83 2551529 NP_905536.1 CDS PG1371 NC_002950.2 1452442 1453320 R phosphorylase complement(1452442..1453320) Porphyromonas gingivalis W83 2551553 NP_905537.1 CDS PG1372 NC_002950.2 1453391 1454812 R hypothetical protein complement(1453391..1454812) Porphyromonas gingivalis W83 2551930 NP_905538.1 CDS PG1373 NC_002950.2 1454890 1455165 D hypothetical protein 1454890..1455165 Porphyromonas gingivalis W83 2551532 NP_905539.1 CDS PG1374 NC_002950.2 1455344 1456630 R hypothetical protein complement(1455344..1456630) Porphyromonas gingivalis W83 2551898 NP_905540.1 CDS PG1375 NC_002950.2 1456693 1456803 D hypothetical protein 1456693..1456803 Porphyromonas gingivalis W83 2551544 NP_905541.1 CDS mutY NC_002950.2 1457805 1459028 R A/G-specific adenine glycosylase complement(1457805..1459028) Porphyromonas gingivalis W83 2551560 NP_905542.1 CDS PG1379 NC_002950.2 1459077 1460015 D similar to SP:P37338, GB:U00096, PID:1789018, SP:P37338, GB:U00096, and PID:1789018; identified by sequence similarity; putative; ABC transporter periplasmic substrate-binding protein 1459077..1460015 Porphyromonas gingivalis W83 2551413 NP_905543.1 CDS PG1380 NC_002950.2 1460067 1460765 D similar to SP:P37338, GB:U00096, and PID:1789018; identified by sequence similarity; putative; ABC transporter ATP-binding protein 1460067..1460765 Porphyromonas gingivalis W83 2551558 NP_905544.1 CDS PG1381 NC_002950.2 1460762 1461511 D similar to SP:P37338, GB:U00096, and PID:1789018; identified by sequence similarity; putative; ABC transporter permease 1460762..1461511 Porphyromonas gingivalis W83 2551546 NP_905545.1 CDS PG1382 NC_002950.2 1461471 1462610 D hypothetical protein 1461471..1462610 Porphyromonas gingivalis W83 2551755 NP_905546.1 CDS PG1383 NC_002950.2 1462809 1463447 D amino acid exporter 1462809..1463447 Porphyromonas gingivalis W83 2551786 NP_905547.1 CDS PG1385 NC_002950.2 1465223 1466425 R hypothetical protein complement(1465223..1466425) Porphyromonas gingivalis W83 2551783 NP_905548.1 CDS gyrA NC_002950.2 1466459 1469038 R DNA gyrase subunit A complement(1466459..1469038) Porphyromonas gingivalis W83 2551782 NP_905549.1 CDS PG1387 NC_002950.2 1469222 1470148 R similar to GB:L08575, and PID:415256; identified by sequence similarity; putative; hypothetical protein complement(1469222..1470148) Porphyromonas gingivalis W83 2551781 NP_905550.1 CDS PG1388 NC_002950.2 1470185 1470979 R hypothetical protein complement(1470185..1470979) Porphyromonas gingivalis W83 2551776 NP_905551.1 CDS PG1389 NC_002950.2 1470960 1471418 R histone-like family DNA-binding protein complement(1470960..1471418) Porphyromonas gingivalis W83 2551774 NP_905552.1 CDS PG1391 NC_002950.2 1471810 1473021 D hypothetical protein 1471810..1473021 Porphyromonas gingivalis W83 2551772 NP_905553.1 CDS PG1392 NC_002950.2 1473049 1474506 R similar to GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, PID:32672, GB:X60459, SP:P17181, PID:1247459, PID:1247461, PID:1567383, PID:1567385, PID:306914, and PID:32672; identified by sequence similarity; putative; rod shape-determining protein RodA complement(1473049..1474506) Porphyromonas gingivalis W83 2551766 NP_905554.1 CDS PG1393 NC_002950.2 1474496 1476361 R similar to GB:J02938, GB:U13680, GB:X15954, GB:X15957, SP:P07864, PID:187074, PID:307120, and PID:535360; identified by sequence similarity; putative; penicillin-binding protein 2 complement(1474496..1476361) Porphyromonas gingivalis W83 2551731 NP_905555.1 CDS PG1394 NC_002950.2 1476354 1476872 R hypothetical protein complement(1476354..1476872) Porphyromonas gingivalis W83 2551748 NP_905556.1 CDS PG1395 NC_002950.2 1476872 1477759 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1476872..1477759) Porphyromonas gingivalis W83 2551763 NP_905557.1 CDS mreB NC_002950.2 1477797 1478816 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1477797..1478816) Porphyromonas gingivalis W83 2551753 NP_905558.1 CDS purH NC_002950.2 1478919 1480445 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1478919..1480445) Porphyromonas gingivalis W83 2551762 NP_905559.1 CDS PG1398 NC_002950.2 1480834 1481007 D hypothetical protein 1480834..1481007 Porphyromonas gingivalis W83 2551761 NP_905560.1 CDS tnaA NC_002950.2 1483489 1484868 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(1483489..1484868) Porphyromonas gingivalis W83 2551747 NP_905561.1 CDS PG1402 NC_002950.2 1485121 1486053 R AP endonuclease domain-containing protein complement(1485121..1486053) Porphyromonas gingivalis W83 2551736 NP_905562.1 CDS PG1403 NC_002950.2 1486263 1487129 R rhomboid family protein complement(1486263..1487129) Porphyromonas gingivalis W83 2551745 NP_905563.1 CDS PG1404 NC_002950.2 1487161 1487877 R rhomboid family protein complement(1487161..1487877) Porphyromonas gingivalis W83 2551746 NP_905564.1 CDS PG1405 NC_002950.2 1487904 1490759 R hypothetical protein complement(1487904..1490759) Porphyromonas gingivalis W83 2551744 NP_905565.1 CDS PG1407 NC_002950.2 1491202 1491738 R similar to GB:X16064, GB:L13806, SP:P13693, and PID:37496; identified by sequence similarity; putative; nitroimidazole resistance protein complement(1491202..1491738) Porphyromonas gingivalis W83 2551739 NP_905566.1 CDS PG1408 NC_002950.2 1492001 1492966 D CzcD family heavy metal efflux protein 1492001..1492966 Porphyromonas gingivalis W83 2551733 NP_905567.1 CDS PG1409 NC_002950.2 1492963 1493355 R hypothetical protein complement(1492963..1493355) Porphyromonas gingivalis W83 2551732 NP_905568.1 CDS PG1410 NC_002950.2 1493401 1493496 D hypothetical protein 1493401..1493496 Porphyromonas gingivalis W83 2551743 NP_905569.1 CDS PG1411 NC_002950.2 1493571 1495256 R similar to GB:J04046, GB:X52606, GB:X52607, GB:X52608, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M19311, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, PID:825635, GB:M27319, GB:U11886, GB:U12022, GB:U16851, SP:P02593, SP:P27482, PID:179810, PID:179884, PID:179888, PID:2055425, PID:531827, PID:665588, and PID:825635; identified by sequence similarity; putative; hypothetical protein complement(1493571..1495256) Porphyromonas gingivalis W83 2551742 NP_905570.1 CDS PG1414 NC_002950.2 1497149 1499764 D hypothetical protein 1497149..1499764 Porphyromonas gingivalis W83 2551740 NP_905571.1 CDS fabK NC_002950.2 1500197 1501138 D similar to GB:X54057, and PID:48509; identified by sequence similarity; putative; enoyl-ACP reductase 1500197..1501138 Porphyromonas gingivalis W83 2551749 NP_905572.1 CDS fumB NC_002950.2 1501435 1503081 D similar to SP:P34210, and PID:550102; identified by sequence similarity; putative; fumarate hydratase class I, anaerobic 1501435..1503081 Porphyromonas gingivalis W83 2551692 NP_905573.1 CDS dnaX NC_002950.2 1503204 1505012 D similar to GB:X04526, GB:M36430, SP:P04901, SP:P11016, PID:31669, and PID:339937; identified by sequence similarity; putative; DNA polymerase III subunits gamma and tau 1503204..1505012 Porphyromonas gingivalis W83 2551730 NP_905574.1 CDS PG1419 NC_002950.2 1505137 1505532 D ISPg5, transposase Orf1 1505137..1505532 Porphyromonas gingivalis W83 2552194 NP_905575.1 CDS PG1420 NC_002950.2 1505586 1506524 D identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 1505586..1506524 Porphyromonas gingivalis W83 2552193 NP_905576.1 CDS PG1421 NC_002950.2 1506964 1507134 R identified by match to PFAM protein family HMM PF00037; ferredoxin, 4Fe-4S complement(1506964..1507134) Porphyromonas gingivalis W83 2551502 NP_905577.1 CDS dacB NC_002950.2 1507470 1509002 R similar to GB:L10393, SP:P08048, SP:P17010, and PID:340436; identified by sequence similarity; putative; D-alanyl-D-alanine carboxypeptidase complement(1507470..1509002) Porphyromonas gingivalis W83 2552117 NP_905578.1 CDS PG1423 NC_002950.2 1508981 1509178 R hypothetical protein complement(1508981..1509178) Porphyromonas gingivalis W83 2552176 NP_905579.1 CDS PG1424 NC_002950.2 1509227 1510897 R peptidylarginine deiminase complement(1509227..1510897) Porphyromonas gingivalis W83 2552184 NP_905580.1 CDS PG1426 NC_002950.2 1511242 1511400 R hypothetical protein complement(1511242..1511400) Porphyromonas gingivalis W83 2552178 NP_905581.1 CDS PG1427 NC_002950.2 1511955 1514486 R thiol protease/hemagglutinin PrtT complement(1511955..1514486) Porphyromonas gingivalis W83 2552172 NP_905582.1 CDS ribH NC_002950.2 1514627 1515112 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1514627..1515112) Porphyromonas gingivalis W83 2552171 NP_905583.1 CDS PG1429 NC_002950.2 1515093 1515203 R hypothetical protein complement(1515093..1515203) Porphyromonas gingivalis W83 2552170 NP_905584.1 CDS PG1430 NC_002950.2 1515204 1515890 R hypothetical protein complement(1515204..1515890) Porphyromonas gingivalis W83 2552169 NP_905585.1 CDS PG1431 NC_002950.2 1516076 1516759 R LuxR family DNA-binding response regulator complement(1516076..1516759) Porphyromonas gingivalis W83 2553375 NP_905586.1 CDS PG1432 NC_002950.2 1516824 1518689 R sensor histidine kinase complement(1516824..1518689) Porphyromonas gingivalis W83 2553374 NP_905587.1 CDS PG1433 NC_002950.2 1518971 1519186 D identified by match to TIGR protein family HMM TIGR01280; hydrolase 1518971..1519186 Porphyromonas gingivalis W83 2553367 NP_905588.1 CDS ispD NC_002950.2 1519162 1519830 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1519162..1519830 Porphyromonas gingivalis W83 2553363 NP_905589.1 CDS PG1435 NC_002950.2 1520443 1521669 D integrase 1520443..1521669 Porphyromonas gingivalis W83 2553354 NP_905590.1 CDS PG1436 NC_002950.2 1521796 1523814 D ATPase 1521796..1523814 Porphyromonas gingivalis W83 2553351 NP_905591.1 CDS PG1439 NC_002950.2 1524675 1526750 R hypothetical protein complement(1524675..1526750) Porphyromonas gingivalis W83 2553347 NP_905592.1 CDS PG1440 NC_002950.2 1526740 1527357 R hypothetical protein complement(1526740..1527357) Porphyromonas gingivalis W83 2553341 NP_905593.1 CDS PG1441 NC_002950.2 1527448 1527615 R lysozyme-like protein complement(1527448..1527615) Porphyromonas gingivalis W83 2553340 NP_905594.1 CDS PG1442 NC_002950.2 1527692 1528120 R hypothetical protein complement(1527692..1528120) Porphyromonas gingivalis W83 2553339 NP_905595.1 CDS PG1444 NC_002950.2 1528886 1529302 D identified by match to PFAM protein family HMM PF02178; hypothetical protein 1528886..1529302 Porphyromonas gingivalis W83 2553328 NP_905596.1 CDS PG1446 NC_002950.2 1529998 1531317 R identified by match to TIGR protein family HMM TIGR01695; MATE efflux family protein complement(1529998..1531317) Porphyromonas gingivalis W83 2553326 NP_905597.1 CDS PG1447 NC_002950.2 1531453 1532301 R AraC family transcriptional regulator complement(1531453..1532301) Porphyromonas gingivalis W83 2553324 NP_905598.1 CDS PG1448 NC_002950.2 1532424 1533509 D ISPg1, transposase 1532424..1533509 Porphyromonas gingivalis W83 2553304 NP_905599.1 CDS PG1449 NC_002950.2 1533672 1534352 R hypothetical protein complement(1533672..1534352) Porphyromonas gingivalis W83 2553303 NP_905600.1 CDS PG1450 NC_002950.2 1534390 1534704 R similar to GB:L25896, PID:451865, GB:L25896, and PID:451865; identified by sequence similarity; putative; hypothetical protein complement(1534390..1534704) Porphyromonas gingivalis W83 2553299 NP_905601.1 CDS PG1451 NC_002950.2 1534837 1535244 D hypothetical protein 1534837..1535244 Porphyromonas gingivalis W83 2553295 NP_905602.1 CDS PG1452 NC_002950.2 1535370 1535732 R putative lipoprotein complement(1535370..1535732) Porphyromonas gingivalis W83 2553293 NP_905603.1 CDS PG1453 NC_002950.2 1535739 1536941 R integrase complement(1535739..1536941) Porphyromonas gingivalis W83 2553285 NP_905604.1 CDS PG1454 NC_002950.2 1536967 1538196 R integrase complement(1536967..1538196) Porphyromonas gingivalis W83 2553284 NP_905605.1 CDS PG1457 NC_002950.2 1538790 1539257 D hypothetical protein 1538790..1539257 Porphyromonas gingivalis W83 2553278 NP_905606.1 CDS PG1458 NC_002950.2 1539284 1539742 D hypothetical protein 1539284..1539742 Porphyromonas gingivalis W83 2553272 NP_905607.1 CDS PG1459 NC_002950.2 1539722 1539859 R hypothetical protein complement(1539722..1539859) Porphyromonas gingivalis W83 2553271 NP_905608.1 CDS PG1460 NC_002950.2 1540100 1540459 D hypothetical protein 1540100..1540459 Porphyromonas gingivalis W83 2553269 NP_905609.1 CDS PG1461 NC_002950.2 1540466 1540987 D hypothetical protein 1540466..1540987 Porphyromonas gingivalis W83 2553268 NP_905610.1 CDS PG1462 NC_002950.2 1541000 1541227 D similar to SP:P34001, and PID:1196943; identified by sequence similarity; putative; hypothetical protein 1541000..1541227 Porphyromonas gingivalis W83 2553264 NP_905611.1 CDS PG1463 NC_002950.2 1541250 1541531 D hypothetical protein 1541250..1541531 Porphyromonas gingivalis W83 2552156 NP_905612.1 CDS PG1465 NC_002950.2 1542122 1542766 D hypothetical protein 1542122..1542766 Porphyromonas gingivalis W83 2552153 NP_905613.1 CDS PG1466 NC_002950.2 1542763 1543335 D hypothetical protein 1542763..1543335 Porphyromonas gingivalis W83 2552151 NP_905614.1 CDS PG1467 NC_002950.2 1543350 1543961 D identified by match to TIGR protein family HMM TIGR01934; UbiE/COQ5 family methlytransferase 1543350..1543961 Porphyromonas gingivalis W83 2553260 NP_905615.1 CDS PG1469 NC_002950.2 1545080 1548088 R type I restriction-modification system, M subunit complement(1545080..1548088) Porphyromonas gingivalis W83 2553256 NP_905616.1 CDS PG1470 NC_002950.2 1548261 1548491 D hypothetical protein 1548261..1548491 Porphyromonas gingivalis W83 2553255 NP_905617.1 CDS PG1471 NC_002950.2 1548671 1549138 D similar to GB:L22647, SP:P34995, and PID:410209; identified by sequence similarity; putative; hypothetical protein 1548671..1549138 Porphyromonas gingivalis W83 2553250 NP_905618.1 CDS PG1472 NC_002950.2 1549173 1549820 D hypothetical protein 1549173..1549820 Porphyromonas gingivalis W83 2553249 NP_905619.1 CDS PG1473 NC_002950.2 1549851 1550315 R conjugative transposon protein TraQ complement(1549851..1550315) Porphyromonas gingivalis W83 2553248 NP_905620.1 CDS PG1474 NC_002950.2 1550328 1550906 R conjugative transposon protein TraO complement(1550328..1550906) Porphyromonas gingivalis W83 2553245 NP_905621.1 CDS PG1475 NC_002950.2 1550900 1551925 R conjugative transposon protein TraN complement(1550900..1551925) Porphyromonas gingivalis W83 2553241 NP_905622.1 CDS PG1476 NC_002950.2 1551948 1553309 R conjugative transposon protein TraM complement(1551948..1553309) Porphyromonas gingivalis W83 2553238 NP_905623.1 CDS PG1477 NC_002950.2 1553299 1553586 R hypothetical protein complement(1553299..1553586) Porphyromonas gingivalis W83 2553234 NP_905624.1 CDS PG1478 NC_002950.2 1553583 1554206 R conjugative transposon protein TraK complement(1553583..1554206) Porphyromonas gingivalis W83 2553231 NP_905625.1 CDS PG1479 NC_002950.2 1554218 1555324 R conjugative transposon protein TraJ complement(1554218..1555324) Porphyromonas gingivalis W83 2553222 NP_905626.1 CDS PG1480 NC_002950.2 1555356 1555985 R conjugative transposon protein TraI complement(1555356..1555985) Porphyromonas gingivalis W83 2553219 NP_905627.1 CDS PG1481 NC_002950.2 1556012 1558537 R conjugative transposon protein TraG complement(1556012..1558537) Porphyromonas gingivalis W83 2553215 NP_905628.1 CDS PG1482 NC_002950.2 1558534 1558869 R conjugative transposon protein TraF complement(1558534..1558869) Porphyromonas gingivalis W83 2553214 NP_905629.1 CDS PG1483 NC_002950.2 1558873 1559175 R conjugative transposon protein TraE complement(1558873..1559175) Porphyromonas gingivalis W83 2553212 NP_905630.1 CDS PG1484 NC_002950.2 1559365 1560069 R hypothetical protein complement(1559365..1560069) Porphyromonas gingivalis W83 2553206 NP_905631.1 CDS PG1485 NC_002950.2 1560074 1560460 R conjugative transposon protein TraC complement(1560074..1560460) Porphyromonas gingivalis W83 2553209 NP_905632.1 CDS PG1486 NC_002950.2 1560447 1561256 R conjugative transposon protein TraA complement(1560447..1561256) Porphyromonas gingivalis W83 2553200 NP_905633.1 CDS PG1487 NC_002950.2 1561608 1561859 D hypothetical protein 1561608..1561859 Porphyromonas gingivalis W83 2553195 NP_905634.1 CDS PG1488 NC_002950.2 1561887 1562288 D hypothetical protein 1561887..1562288 Porphyromonas gingivalis W83 2552140 NP_905635.1 CDS PG1489 NC_002950.2 1562273 1563553 D hypothetical protein 1562273..1563553 Porphyromonas gingivalis W83 2552137 NP_905636.1 CDS PG1490 NC_002950.2 1563555 1565564 D TraG family protein 1563555..1565564 Porphyromonas gingivalis W83 2552136 NP_905637.1 CDS PG1491 NC_002950.2 1565881 1566093 D hypothetical protein 1565881..1566093 Porphyromonas gingivalis W83 2552133 NP_905638.1 CDS PG1492 NC_002950.2 1566190 1566906 D hypothetical protein 1566190..1566906 Porphyromonas gingivalis W83 2552128 NP_905639.1 CDS PG1493 NC_002950.2 1566923 1569598 D hypothetical protein 1566923..1569598 Porphyromonas gingivalis W83 2552126 NP_905640.1 CDS PG1494 NC_002950.2 1569981 1571294 D similar to GP:16549048; identified by sequence similarity; putative; hypothetical protein 1569981..1571294 Porphyromonas gingivalis W83 2553194 NP_905641.1 CDS topB-2 NC_002950.2 1571383 1573476 D similar to SP:P33446, GB:X64876, and PID:313842; identified by sequence similarity; putative; DNA topoisomerase III 1571383..1573476 Porphyromonas gingivalis W83 2553189 NP_905642.1 CDS PG1496 NC_002950.2 1573482 1573757 D hypothetical protein 1573482..1573757 Porphyromonas gingivalis W83 2553186 NP_905643.1 CDS PG1497 NC_002950.2 1574225 1574695 D histone-like family DNA-binding protein 1574225..1574695 Porphyromonas gingivalis W83 2553180 NP_905644.1 CDS PG1498 NC_002950.2 1574796 1575710 D hypothetical protein 1574796..1575710 Porphyromonas gingivalis W83 2553178 NP_905645.1 CDS PG1499 NC_002950.2 1575664 1576161 D hypothetical protein 1575664..1576161 Porphyromonas gingivalis W83 2553174 NP_905646.1 CDS PG1500 NC_002950.2 1576239 1578530 D hypothetical protein 1576239..1578530 Porphyromonas gingivalis W83 2553171 NP_905647.1 CDS PG1501 NC_002950.2 1578590 1579189 R TetR family transcriptional regulator complement(1578590..1579189) Porphyromonas gingivalis W83 2553167 NP_905648.1 CDS PG1503 NC_002950.2 1580365 1581315 D similar to GB:M59757, SP:P25996, PID:143392, and GB:AL009126; identified by sequence similarity; putative; LytB-like protein 1580365..1581315 Porphyromonas gingivalis W83 2553163 NP_905649.1 CDS PG1504 NC_002950.2 1581333 1582319 D NAD dependent protein 1581333..1582319 Porphyromonas gingivalis W83 2553158 NP_905650.1 CDS PG1505 NC_002950.2 1582383 1583261 D similar to SP:P29201, and PID:148781; identified by sequence similarity; putative; radical SAM domain-containing protein 1582383..1583261 Porphyromonas gingivalis W83 2553151 NP_905651.1 CDS PG1507 NC_002950.2 1583760 1586189 D hypothetical protein 1583760..1586189 Porphyromonas gingivalis W83 2553149 NP_905652.1 CDS PG1508 NC_002950.2 1586200 1586748 D hypothetical protein 1586200..1586748 Porphyromonas gingivalis W83 2553142 NP_905653.1 CDS PG1509 NC_002950.2 1586831 1587499 D similar to GB:Z18899, GB:Z29633, PID:499594, PID:505400, and PID:553410; identified by sequence similarity; putative; HAD superfamily hydrolase 1586831..1587499 Porphyromonas gingivalis W83 2553143 NP_905654.1 CDS PG1510 NC_002950.2 1587519 1587626 R hypothetical protein complement(1587519..1587626) Porphyromonas gingivalis W83 2553139 NP_905655.1 CDS PG1511 NC_002950.2 1587749 1587910 D hypothetical protein 1587749..1587910 Porphyromonas gingivalis W83 2553127 NP_905656.1 CDS PG1512 NC_002950.2 1587903 1588520 R hypothetical protein complement(1587903..1588520) Porphyromonas gingivalis W83 2553113 NP_905657.1 CDS PG1513 NC_002950.2 1588609 1589925 D phosphoribosyltransferase /phosphoglycerate mutase 1588609..1589925 Porphyromonas gingivalis W83 2553122 NP_905658.1 CDS PG1514 NC_002950.2 1589940 1590929 D glycerol dehydrogenase 1589940..1590929 Porphyromonas gingivalis W83 2552111 NP_905659.1 CDS PG1515 NC_002950.2 1590917 1591930 D similar to SP:P15756, and PID:43545; identified by sequence similarity; putative; ribulose bisphosphate carboxylase-like protein 1590917..1591930 Porphyromonas gingivalis W83 2552109 NP_905660.1 CDS PG1516 NC_002950.2 1591881 1593257 D hypothetical protein 1591881..1593257 Porphyromonas gingivalis W83 2552105 NP_905661.1 CDS PG1519 NC_002950.2 1595845 1597485 D hypothetical protein 1595845..1597485 Porphyromonas gingivalis W83 2553103 NP_905662.1 CDS PG1521 NC_002950.2 1598144 1599193 R similar to GB:L03728, SP:P22993, PID:147103, PID:152544, GB:X59798, GB:M73554, GB:S71637, SP:P24385, PID:179365, PID:181245, PID:307345, PID:312912, PID:35632, and PID:483601; identified by sequence similarity; putative; O-succinylbenzoic acid--CoA ligase complement(1598144..1599193) Porphyromonas gingivalis W83 2553101 NP_905663.1 CDS PG1522 NC_002950.2 1599190 1600260 R mandelate racemase/muconate lactonizing enzyme family protein complement(1599190..1600260) Porphyromonas gingivalis W83 2553098 NP_905664.1 CDS menB NC_002950.2 1600260 1601078 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(1600260..1601078) Porphyromonas gingivalis W83 2553097 NP_905665.1 CDS menD NC_002950.2 1601103 1602836 R 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase complement(1601103..1602836) Porphyromonas gingivalis W83 2553091 NP_905666.1 CDS PG1525 NC_002950.2 1602849 1603955 R similar to GB:X73039, SP:P35715, SP:P35717, SP:P48431, PID:312152, PID:854182, PID:938229, and PID:938234; identified by sequence similarity; putative; isochorismate synthase complement(1602849..1603955) Porphyromonas gingivalis W83 2553092 NP_905667.1 CDS PG1526 NC_002950.2 1604022 1605461 R hypothetical protein complement(1604022..1605461) Porphyromonas gingivalis W83 2553087 NP_905668.1 CDS PG1527 NC_002950.2 1605657 1605884 R identified by match to TIGR protein family HMM TIGR01764; hypothetical protein complement(1605657..1605884) Porphyromonas gingivalis W83 2553079 NP_905669.1 CDS PG1528 NC_002950.2 1605923 1607248 D similar to GB:M98252, GB:L06419, SP:Q02809, and PID:190074; identified by sequence similarity; putative; hypothetical protein 1605923..1607248 Porphyromonas gingivalis W83 2553077 NP_905670.1 CDS PG1529 NC_002950.2 1607375 1609513 D hypothetical protein 1607375..1609513 Porphyromonas gingivalis W83 2553075 NP_905671.1 CDS PG1530 NC_002950.2 1609510 1610400 D similar to GB:U14003, SP:P33999, PID:537214, GB:U00096, and PID:1790833; identified by sequence similarity; putative; hypothetical protein 1609510..1610400 Porphyromonas gingivalis W83 2553073 NP_905672.1 CDS PG1532 NC_002950.2 1611612 1611806 R identified by match to TIGR protein family HMM TIGR01764; hypothetical protein complement(1611612..1611806) Porphyromonas gingivalis W83 2553069 NP_905673.1 CDS PG1533 NC_002950.2 1611803 1613851 R TOPRIM domain-containing protein complement(1611803..1613851) Porphyromonas gingivalis W83 2553056 NP_905674.1 CDS PG1534 NC_002950.2 1613848 1614237 R similar to GB:U02141, GB:X61535, GB:L43967, SP:P47474, PID:406334, PID:1045921, GB:U14003, SP:P39390, PID:537182, GB:U00096, and PID:1790798; identified by sequence similarity; putative; hypothetical protein complement(1613848..1614237) Porphyromonas gingivalis W83 2553065 NP_905675.1 CDS PG1535 NC_002950.2 1614240 1614581 R transcriptional regulator complement(1614240..1614581) Porphyromonas gingivalis W83 2553057 NP_905676.1 CDS PG1536 NC_002950.2 1616502 1617389 D cell division protein FtsX 1616502..1617389 Porphyromonas gingivalis W83 2553054 NP_905677.1 CDS PG1537 NC_002950.2 1617364 1617663 D hypothetical protein 1617364..1617663 Porphyromonas gingivalis W83 2553049 NP_905678.1 CDS PG1538 NC_002950.2 1617771 1618613 D undecaprenol kinase 1617771..1618613 Porphyromonas gingivalis W83 2553042 NP_905679.1 CDS queA NC_002950.2 1619417 1620469 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1619417..1620469 Porphyromonas gingivalis W83 2553036 NP_905680.1 CDS folK NC_002950.2 1620466 1620915 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1620466..1620915 Porphyromonas gingivalis W83 2553032 NP_905681.1 CDS prtC NC_002950.2 1620928 1622172 D collagenase 1620928..1622172 Porphyromonas gingivalis W83 2553029 NP_905682.1 CDS PG1543 NC_002950.2 1622228 1622647 D thioesterase 1622228..1622647 Porphyromonas gingivalis W83 2553028 NP_905683.1 CDS yaaA NC_002950.2 1622732 1623502 D similar to GB:J03071, GB:A00501, GB:V00519, GB:M13438, GB:V00520, GB:J00148, GB:A12770, GB:A15072, GB:M14398, SP:P01241, SP:P01243, PID:183147, PID:183159, PID:490144, PID:512406, GB:J03071, GB:A00501, GB:V00519, GB:M13438, GB:V00520, GB:J00148, GB:A12770, GB:A15072, GB:M14398, SP:P01241, SP:P01243, PID:183147, PID:183159, PID:490144, and PID:512406; identified by sequence similarity; putative; hypothetical protein 1622732..1623502 Porphyromonas gingivalis W83 2553025 NP_905684.1 CDS sodB NC_002950.2 1623640 1624215 D similar to GB:M64355, GB:D13074, GB:L06880, PID:2358061, PID:292767, PID:339329, PID:407739, PID:619777, PID:975606, GB:M64355, GB:D13074, GB:L06880, PID:2358061, PID:292767, PID:339329, PID:407739, PID:619777, and PID:975606; identified by sequence similarity; putative; superoxide dismutase, Fe-Mn 1623640..1624215 Porphyromonas gingivalis W83 2553021 NP_905685.1 CDS PG1546 NC_002950.2 1624227 1624415 D hypothetical protein 1624227..1624415 Porphyromonas gingivalis W83 2553012 NP_905686.1 CDS PG1547 NC_002950.2 1624402 1624755 D similar to GB:X77383, SP:P43234, and PID:574804; identified by sequence similarity; putative; hypothetical protein 1624402..1624755 Porphyromonas gingivalis W83 2553013 NP_905687.1 CDS PG1549 NC_002950.2 1627897 1628037 R hypothetical protein complement(1627897..1628037) Porphyromonas gingivalis W83 2552093 NP_905688.1 CDS hmuY NC_002950.2 1628578 1629006 D hmuY protein 1628578..1629006 Porphyromonas gingivalis W83 2552090 NP_905689.1 CDS hmuR NC_002950.2 1629021 1630961 D TonB-dependent receptor HmuR 1629021..1630961 Porphyromonas gingivalis W83 2552088 NP_905690.1 CDS PG1553 NC_002950.2 1630998 1635407 D similar to SP:P17430, GB:X52093, GB:X52950, and PID:47743; identified by sequence similarity; putative; CobN/magnesium chelatase 1630998..1635407 Porphyromonas gingivalis W83 2552083 NP_905691.1 CDS PG1554 NC_002950.2 1635404 1636081 D hypothetical protein 1635404..1636081 Porphyromonas gingivalis W83 2552081 NP_905692.1 CDS PG1555 NC_002950.2 1636151 1636729 D similar to SP:P36563, PID:434583, PID:466739, GB:U00096, PID:1790029, SP:P36563, PID:434583, PID:466739, GB:U00096, and PID:1790029; identified by sequence similarity; putative; hypothetical protein 1636151..1636729 Porphyromonas gingivalis W83 2552080 NP_905693.1 CDS PG1556 NC_002950.2 1636735 1637061 D hypothetical protein 1636735..1637061 Porphyromonas gingivalis W83 2552079 NP_905694.1 CDS gcvT NC_002950.2 1637994 1639082 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1637994..1639082) Porphyromonas gingivalis W83 2553006 NP_905695.1 CDS rfbB NC_002950.2 1639157 1640221 R similar to SP:P02345, GB:X04500, GB:M15330, GB:K02770, GB:M54933, GB:X02532, GB:X56087, GB:X52431, GB:M15840, SP:P01584, PID:186288, PID:307043, PID:307045, PID:312408, PID:33790, PID:35663, and PID:386816; identified by sequence similarity; putative; dTDP-glucose 4,6-dehydratase complement(1639157..1640221) Porphyromonas gingivalis W83 2553005 NP_905696.1 CDS rfbD NC_002950.2 1640228 1641085 R dTDP-4-dehydrorhamnose reductase complement(1640228..1641085) Porphyromonas gingivalis W83 2552996 NP_905697.1 CDS rfbC NC_002950.2 1641082 1641672 R dTDP-4-dehydrorhamnose 3,5-epimerase complement(1641082..1641672) Porphyromonas gingivalis W83 2552991 NP_905698.1 CDS rfbA NC_002950.2 1641687 1642556 R similar to GB:X69292, GB:S67240, SP:P35749, PID:2104553, PID:2352947, and PID:36507; identified by sequence similarity; putative; glucose-1-phosphate thymidylyltransferase complement(1641687..1642556) Porphyromonas gingivalis W83 2552987 NP_905699.1 CDS PG1564 NC_002950.2 1642671 1644626 R hypothetical protein complement(1642671..1644626) Porphyromonas gingivalis W83 2552985 NP_905700.1 CDS PG1565 NC_002950.2 1644711 1645949 R similar to GB:J05243, GB:M18627, GB:M19725, GB:M24773, GB:X86901, GB:U26396, SP:Q13813, PID:178426, PID:179106, PID:1805280, PID:537331, PID:829111, PID:836669, GB:J05243, GB:M18627, GB:M19725, GB:M24773, GB:X86901, GB:U26396, SP:Q13813, PID:178426, PID:179106, PID:1805280, PID:537331, PID:829111, and PID:836669; identified by sequence similarity; putative; 3-deoxy-D-manno-octulosonic-acid transferase complement(1644711..1645949) Porphyromonas gingivalis W83 2552980 NP_905701.1 CDS gltX NC_002950.2 1645974 1647491 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(1645974..1647491) Porphyromonas gingivalis W83 2552976 NP_905702.1 CDS PG1570 NC_002950.2 1648672 1649055 R rhodanese-like domain-containing protein complement(1648672..1649055) Porphyromonas gingivalis W83 2552972 NP_905703.1 CDS PG1571 NC_002950.2 1649028 1650443 R similar to GB:X80061, and PID:510823; identified by sequence similarity; putative; metallo-beta-lactamase superfamily protein complement(1649028..1650443) Porphyromonas gingivalis W83 2552967 NP_905704.1 CDS PG1572 NC_002950.2 1650536 1651342 R similar to SP:P25006, PID:1125639, SP:P25006, and PID:1125639; identified by sequence similarity; putative; hypothetical protein complement(1650536..1651342) Porphyromonas gingivalis W83 2552960 NP_905705.1 CDS PG1573 NC_002950.2 1651407 1652258 R Crp family transcriptional regulator complement(1651407..1652258) Porphyromonas gingivalis W83 2552959 NP_905706.1 CDS PG1574 NC_002950.2 1652551 1652703 R hypothetical protein complement(1652551..1652703) Porphyromonas gingivalis W83 2552958 NP_905707.1 CDS nadB NC_002950.2 1653156 1654712 D L-aspartate oxidase 1653156..1654712 Porphyromonas gingivalis W83 2552955 NP_905708.1 CDS nadC NC_002950.2 1654759 1655586 D nicotinate-nucleotide pyrophosphorylase 1654759..1655586 Porphyromonas gingivalis W83 2552952 NP_905709.1 CDS nadA NC_002950.2 1655606 1656532 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1655606..1656532 Porphyromonas gingivalis W83 2552949 NP_905710.1 CDS PG1579 NC_002950.2 1656633 1657628 D similar to GB:L14437, SP:P39809, PID:451869, PID:1762336, and GB:AL009126; identified by sequence similarity; putative; MoxR family ATPase 1656633..1657628 Porphyromonas gingivalis W83 2552941 NP_905711.1 CDS PG1580 NC_002950.2 1657639 1658511 D similar to SP:P29134, and SP:P29134; identified by sequence similarity; putative; hypothetical protein 1657639..1658511 Porphyromonas gingivalis W83 2552935 NP_905712.1 CDS PG1581 NC_002950.2 1658508 1659464 D hypothetical protein 1658508..1659464 Porphyromonas gingivalis W83 2552040 NP_905713.1 CDS batA NC_002950.2 1659461 1660444 D batA protein 1659461..1660444 Porphyromonas gingivalis W83 2552068 NP_905714.1 CDS batB NC_002950.2 1660455 1661474 D batB protein 1660455..1661474 Porphyromonas gingivalis W83 2552067 NP_905715.1 CDS batC NC_002950.2 1661471 1662214 D batC protein 1661471..1662214 Porphyromonas gingivalis W83 2552063 NP_905716.1 CDS batD NC_002950.2 1662395 1664197 D batD protein 1662395..1664197 Porphyromonas gingivalis W83 2552058 NP_905717.1 CDS batE NC_002950.2 1664194 1665102 D batE protein 1664194..1665102 Porphyromonas gingivalis W83 2552051 NP_905718.1 CDS PG1587 NC_002950.2 1665123 1665839 D PAP2 superfamily protein 1665123..1665839 Porphyromonas gingivalis W83 2552049 NP_905719.1 CDS PG1588 NC_002950.2 1665855 1666622 R hypothetical protein complement(1665855..1666622) Porphyromonas gingivalis W83 2552046 NP_905720.1 CDS folP NC_002950.2 1666683 1667528 R similar to GB:M60178, SP:P22865, PID:149525, and PID:512521; identified by sequence similarity; putative; dihydropteroate synthase complement(1666683..1667528) Porphyromonas gingivalis W83 2552920 NP_905721.1 CDS PG1591 NC_002950.2 1668057 1669154 D similar to GP:19917917, SP:P25889, GB:U00096, and PID:1788469; identified by sequence similarity; putative; hypothetical protein 1668057..1669154 Porphyromonas gingivalis W83 2552922 NP_905722.1 CDS PG1592 NC_002950.2 1669523 1671595 D identified by match to TIGR protein family HMM TIGR01695; HDIG domain-containing protein 1669523..1671595 Porphyromonas gingivalis W83 2552913 NP_905723.1 CDS aroK NC_002950.2 1671643 1672203 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1671643..1672203 Porphyromonas gingivalis W83 2552909 NP_905724.1 CDS PG1594 NC_002950.2 1672142 1673677 R similar to GB:D00496, SP:P17167, and PID:216759; identified by sequence similarity; putative; ComEC/Rec2-like protein complement(1672142..1673677) Porphyromonas gingivalis W83 2552905 NP_905725.1 CDS rpe NC_002950.2 1673684 1674340 R ribulose-phosphate 3-epimerase complement(1673684..1674340) Porphyromonas gingivalis W83 2552894 NP_905726.1 CDS ileS NC_002950.2 1674683 1678096 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 1674683..1678096 Porphyromonas gingivalis W83 2552895 NP_905727.1 CDS PG1597 NC_002950.2 1678166 1678546 D similar to GB:U14003, SP:P39402, PID:537207, GB:U00096, and PID:1790826; identified by sequence similarity; putative; DnaK suppressor protein 1678166..1678546 Porphyromonas gingivalis W83 2552890 NP_905728.1 CDS PG1598 NC_002950.2 1678550 1679230 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1678550..1679230 Porphyromonas gingivalis W83 2552888 NP_905729.1 CDS PG1599 NC_002950.2 1679227 1680015 D hypothetical protein 1679227..1680015 Porphyromonas gingivalis W83 2552885 NP_905730.1 CDS PG1600 NC_002950.2 1680049 1681074 R hypothetical protein complement(1680049..1681074) Porphyromonas gingivalis W83 2552875 NP_905731.1 CDS PG1601 NC_002950.2 1681109 1681882 R similar to GB:M89470, GB:L25597, SP:Q02962, PID:438650, and PID:553607; identified by sequence similarity; putative; biotin--acetyl-CoA-carboxylase ligase complement(1681109..1681882) Porphyromonas gingivalis W83 2552874 NP_905732.1 CDS PG1602 NC_002950.2 1681854 1682234 R similar to GB:M16937, GB:M30598, SP:P09629, SP:P31267, SP:P31268, and PID:306878; identified by sequence similarity; putative; hypothetical protein complement(1681854..1682234) Porphyromonas gingivalis W83 2552867 NP_905733.1 CDS PG1603 NC_002950.2 1682305 1682889 D hydrolyzes non-standard nucleotides such as xanthine and inosine; putative deoxyribonucleoside-triphosphatase 1682305..1682889 Porphyromonas gingivalis W83 2552864 NP_905734.1 CDS PG1604 NC_002950.2 1682877 1685207 D hypothetical protein 1682877..1685207 Porphyromonas gingivalis W83 2552855 NP_905735.1 CDS pepC NC_002950.2 1685319 1686662 D similar to GB:X70308, GB:D13079, GB:M99570, GB:L11162, GB:S61985, PID:2358033, PID:36884, PID:36894, PID:36901, PID:404053, PID:407751, PID:437035, PID:639839, PID:758615, PID:804775, PID:804776, PID:804777, and PID:940541; identified by sequence similarity; putative; aminopeptidase 1685319..1686662 Porphyromonas gingivalis W83 2552854 NP_905736.1 CDS PG1606 NC_002950.2 1686993 1687715 R ion transporter complement(1686993..1687715) Porphyromonas gingivalis W83 2552852 NP_905737.1 CDS mmdB NC_002950.2 1688775 1689926 R similar to GB:S85655, GB:U17179, and SP:P35232; identified by sequence similarity; putative; methylmalonyl-CoA decarboxylase subunit beta complement(1688775..1689926) Porphyromonas gingivalis W83 2552847 NP_905738.1 CDS mmdC NC_002950.2 1689931 1690365 R methylmalonyl-CoA decarboxylase subunit gamma complement(1689931..1690365) Porphyromonas gingivalis W83 2552848 NP_905739.1 CDS PG1610 NC_002950.2 1690403 1690639 R hypothetical protein complement(1690403..1690639) Porphyromonas gingivalis W83 2552845 NP_905740.1 CDS PG1611 NC_002950.2 1690636 1691577 R hypothetical protein complement(1690636..1691577) Porphyromonas gingivalis W83 2552842 NP_905741.1 CDS mmdA NC_002950.2 1691602 1693155 R identified by match to TIGR protein family HMM TIGR01698; methylmalonyl-CoA decarboxylase subunit alpha complement(1691602..1693155) Porphyromonas gingivalis W83 2552838 NP_905742.1 CDS PG1613 NC_002950.2 1693254 1693658 R similar to GB:M35130, SP:P14638, GB:M31474, and PID:150072; identified by sequence similarity; putative; glyoxalase complement(1693254..1693658) Porphyromonas gingivalis W83 2552835 NP_905743.1 CDS frdB NC_002950.2 1693890 1694645 R catalyzes the reversible formation of fumarate and ubiquinol from succinate and ubiquinone; succinate dehydrogenase/fumarate reductase iron-sulfur subunit complement(1693890..1694645) Porphyromonas gingivalis W83 2552830 NP_905744.1 CDS sdhA NC_002950.2 1694674 1696617 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(1694674..1696617) Porphyromonas gingivalis W83 2552827 NP_905745.1 CDS PG1616 NC_002950.2 1696648 1697340 R hypothetical protein complement(1696648..1697340) Porphyromonas gingivalis W83 2552820 NP_905746.1 CDS PG1617 NC_002950.2 1697387 1697845 R hypothetical protein complement(1697387..1697845) Porphyromonas gingivalis W83 2552816 NP_905747.1 CDS PG1618 NC_002950.2 1698043 1698729 D similar to GB:L10975, GB:L10975, PID:425446, GB:L10975, GB:L10975, and PID:425446; identified by sequence similarity; putative; hypothetical protein 1698043..1698729 Porphyromonas gingivalis W83 2552808 NP_905748.1 CDS PG1619 NC_002950.2 1698708 1699475 D similar to GB:M57707, GB:M38258, SP:P13631, SP:P22932, PID:190868, PID:190872, and PID:306887; identified by sequence similarity; putative; biotin synthesis protein BioC 1698708..1699475 Porphyromonas gingivalis W83 2552806 NP_905749.1 CDS PG1620 NC_002950.2 1699505 1700581 R similar to GB:M64171, GB:X60678, PID:144537, PID:311996, PID:927405, and PID:1518659; identified by sequence similarity; putative; carboxyl-terminal protease-like protein complement(1699505..1700581) Porphyromonas gingivalis W83 2552802 NP_905750.1 CDS PG1621 NC_002950.2 1700574 1701521 R hypothetical protein complement(1700574..1701521) Porphyromonas gingivalis W83 2552796 NP_905751.1 CDS PG1622 NC_002950.2 1701508 1704204 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1701508..1704204) Porphyromonas gingivalis W83 2552794 NP_905752.1 CDS PG1623 NC_002950.2 1704265 1705455 R membrane bound regulatory protein complement(1704265..1705455) Porphyromonas gingivalis W83 2552790 NP_905753.1 CDS PG1624 NC_002950.2 1706278 1707363 R ISPg1, transposase complement(1706278..1707363) Porphyromonas gingivalis W83 2552785 NP_905754.1 CDS PG1625 NC_002950.2 1707576 1708778 D hypothetical protein 1707576..1708778 Porphyromonas gingivalis W83 2552783 NP_905755.1 CDS PG1626 NC_002950.2 1708882 1710546 D hypothetical protein 1708882..1710546 Porphyromonas gingivalis W83 2552786 NP_905756.1 CDS PG1630 NC_002950.2 1711912 1712202 D hypothetical protein 1711912..1712202 Porphyromonas gingivalis W83 2552773 NP_905757.1 CDS galM NC_002950.2 1712408 1713475 D similar to GB:X78412, SP:P45454, PID:498768, GB:X56997, GB:Y00361, SP:P02248, SP:P14793, PID:37565, PID:37567, PID:37569, and PID:825728; identified by sequence similarity; putative; aldose 1-epimerase 1712408..1713475 Porphyromonas gingivalis W83 2552772 NP_905758.1 CDS galK NC_002950.2 1713525 1714679 D galactokinase 1713525..1714679 Porphyromonas gingivalis W83 2552770 NP_905759.1 CDS PG1634 NC_002950.2 1714813 1715238 R hypothetical protein complement(1714813..1715238) Porphyromonas gingivalis W83 2552767 NP_905760.1 CDS PG1635 NC_002950.2 1715304 1715951 R hypothetical protein complement(1715304..1715951) Porphyromonas gingivalis W83 2552028 NP_905761.1 CDS PG1636 NC_002950.2 1715965 1718550 R FtsK/SpoIIIE family protein complement(1715965..1718550) Porphyromonas gingivalis W83 2552755 NP_905762.1 CDS PG1638 NC_002950.2 1718754 1719740 R thioredoxin family protein complement(1718754..1719740) Porphyromonas gingivalis W83 2552757 NP_905763.1 CDS PG1639 NC_002950.2 1719866 1720009 R hypothetical protein complement(1719866..1720009) Porphyromonas gingivalis W83 2552751 NP_905764.1 CDS dinF NC_002950.2 1720025 1721335 R DNA-damage-inducible protein F complement(1720025..1721335) Porphyromonas gingivalis W83 2552749 NP_905765.1 CDS PG1641 NC_002950.2 1721350 1721853 R identified by match to PFAM protein family HMM PF01451; phosphotyrosine protein phosphatase complement(1721350..1721853) Porphyromonas gingivalis W83 2552747 NP_905766.1 CDS PG1644 NC_002950.2 1724771 1725709 R ISPg5, transposase Orf2 complement(1724771..1725709) Porphyromonas gingivalis W83 2551509 NP_905767.1 CDS PG1645 NC_002950.2 1725763 1726152 R ISPg5, transposase Orf1 complement(1725763..1726152) Porphyromonas gingivalis W83 2551518 NP_905768.1 CDS cls NC_002950.2 1726413 1727834 D cardiolipin synthetase 1726413..1727834 Porphyromonas gingivalis W83 2551517 NP_905769.1 CDS PG1648 NC_002950.2 1727902 1730142 D RelA/SpoT family protein 1727902..1730142 Porphyromonas gingivalis W83 2552656 NP_905770.1 CDS PG1649 NC_002950.2 1730120 1730242 R hypothetical protein complement(1730120..1730242) Porphyromonas gingivalis W83 2552660 NP_905771.1 CDS PG1651 NC_002950.2 1730466 1733453 D hypothetical protein 1730466..1733453 Porphyromonas gingivalis W83 2552718 NP_905772.1 CDS PG1652 NC_002950.2 1733480 1735270 D hypothetical protein 1733480..1735270 Porphyromonas gingivalis W83 2552717 NP_905773.1 CDS PG1653 NC_002950.2 1735295 1736518 D similar to GB:M37435, GB:M27087, GB:M11038, GB:M11295, GB:M11296, GB:M64592, SP:P09603, PID:181135, PID:181144, PID:187463, PID:508986, PID:757917, PID:758781, GB:M37435, GB:M27087, GB:M11038, GB:M11295, GB:M11296, GB:M64592, SP:P09603, PID:181135, PID:181144, PID:187463, PID:508986, PID:757917, and PID:758781; identified by sequence similarity; putative; hypothetical protein 1735295..1736518 Porphyromonas gingivalis W83 2552713 NP_905774.1 CDS PG1654 NC_002950.2 1736598 1737221 D D-alanyl-D-alanine dipeptidase 1736598..1737221 Porphyromonas gingivalis W83 2552723 NP_905775.1 CDS PG1655 NC_002950.2 1737235 1737444 D hypothetical protein 1737235..1737444 Porphyromonas gingivalis W83 2552702 NP_905776.1 CDS mutA NC_002950.2 1737599 1739455 D similar to GB:M13932, GB:M18000, SP:P08708, PID:337501, and PID:337503; identified by sequence similarity; putative; methylmalonyl-CoA mutase small subunit 1737599..1739455 Porphyromonas gingivalis W83 2552711 NP_905777.1 CDS mutB NC_002950.2 1739484 1741631 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1739484..1741631 Porphyromonas gingivalis W83 2552667 NP_905778.1 CDS PG1658 NC_002950.2 1741837 1742994 R ISPg4, transposase complement(1741837..1742994) Porphyromonas gingivalis W83 2552677 NP_905779.1 CDS PG1659 NC_002950.2 1743445 1743837 R hypothetical protein complement(1743445..1743837) Porphyromonas gingivalis W83 2552669 NP_905780.1 CDS PG1660 NC_002950.2 1743834 1744358 R ECF subfamily RNA polymerase sigma factor complement(1743834..1744358) Porphyromonas gingivalis W83 2552666 NP_905781.1 CDS PG1661 NC_002950.2 1744608 1744895 D hypothetical protein 1744608..1744895 Porphyromonas gingivalis W83 2552685 NP_905782.1 CDS PG1662 NC_002950.2 1744876 1745250 D hypothetical protein 1744876..1745250 Porphyromonas gingivalis W83 2552699 NP_905783.1 CDS PG1663 NC_002950.2 1745269 1745928 D ABC transporter ATP-binding protein 1745269..1745928 Porphyromonas gingivalis W83 2552698 NP_905784.1 CDS PG1664 NC_002950.2 1745953 1747227 D similar to SP:P28910, PID:147625, PID:466617, GB:U00096, and PID:1789892; identified by sequence similarity; putative; ABC transporter permease 1745953..1747227 Porphyromonas gingivalis W83 2552695 NP_905785.1 CDS PG1665 NC_002950.2 1747250 1748512 D similar to GB:U18321, SP:P51398, and PID:603764; identified by sequence similarity; putative; ABC transporter permease 1747250..1748512 Porphyromonas gingivalis W83 2552688 NP_905786.1 CDS PG1666 NC_002950.2 1748582 1749688 D RND family efflux transporter MFP subunit 1748582..1749688 Porphyromonas gingivalis W83 2552737 NP_905787.1 CDS PG1667 NC_002950.2 1749685 1751052 D previously submitted to Genbank by Ross, et al as immunoreactive 51kD antigen PG52; outer membrane efflux protein 1749685..1751052 Porphyromonas gingivalis W83 2552661 NP_905788.1 CDS PG1669 NC_002950.2 1755501 1755656 R hypothetical protein complement(1755501..1755656) Porphyromonas gingivalis W83 2552643 NP_905789.1 CDS PG1670 NC_002950.2 1755785 1755943 R hypothetical protein complement(1755785..1755943) Porphyromonas gingivalis W83 2552645 NP_905790.1 CDS PG1671 NC_002950.2 1757530 1757748 R hypothetical protein complement(1757530..1757748) Porphyromonas gingivalis W83 2552622 NP_905791.1 CDS PG1672 NC_002950.2 1757777 1757944 D hypothetical protein 1757777..1757944 Porphyromonas gingivalis W83 2552624 NP_905792.1 CDS PG1673 NC_002950.2 1758528 1759685 D ISPg4, transposase 1758528..1759685 Porphyromonas gingivalis W83 2552618 NP_905793.1 CDS PG1675 NC_002950.2 1760322 1760420 D hypothetical protein 1760322..1760420 Porphyromonas gingivalis W83 2552609 NP_905794.1 CDS pckA NC_002950.2 1760579 1762186 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(1760579..1762186) Porphyromonas gingivalis W83 2552610 NP_905795.1 CDS pgk NC_002950.2 1762482 1763738 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1762482..1763738 Porphyromonas gingivalis W83 2552606 NP_905796.1 CDS PG1678 NC_002950.2 1763845 1763952 R hypothetical protein complement(1763845..1763952) Porphyromonas gingivalis W83 2552604 NP_905797.1 CDS PG1679 NC_002950.2 1763936 1765330 D hypothetical protein 1763936..1765330 Porphyromonas gingivalis W83 2552599 NP_905798.1 CDS PG1681 NC_002950.2 1766552 1768528 D glycogen debranching protein 1766552..1768528 Porphyromonas gingivalis W83 2552597 NP_905799.1 CDS PG1682 NC_002950.2 1768525 1769787 D glycosyl transferase 1768525..1769787 Porphyromonas gingivalis W83 2552587 NP_905800.1 CDS PG1683 NC_002950.2 1769784 1771070 D similar to GB:Z27512, GB:Z14073, SP:P01764, PID:483870, PID:495944, PID:495993, PID:495995, PID:496014, PID:511000, PID:553412, PID:553422, PID:553456, PID:553461, PID:553468, PID:587277, PID:587307, PID:587314, PID:587318, PID:619625, PID:642584, PID:790809, PID:896272, PID:896273, PID:903667, PID:903675, PID:905377, PID:976299, and PID:976311; identified by sequence similarity; putative; hypothetical protein 1769784..1771070 Porphyromonas gingivalis W83 2552592 NP_905801.1 CDS PG1684 NC_002950.2 1771067 1771543 D hypothetical protein 1771067..1771543 Porphyromonas gingivalis W83 2552593 NP_905802.1 CDS PG1685 NC_002950.2 1772306 1773088 R hypothetical protein complement(1772306..1773088) Porphyromonas gingivalis W83 2552584 NP_905803.1 CDS PG1687 NC_002950.2 1773902 1774291 R identified by match to PFAM protein family HMM PF01230; HIT family protein complement(1773902..1774291) Porphyromonas gingivalis W83 2552536 NP_905804.1 CDS greA NC_002950.2 1774306 1774776 R transcription elongation factor GreA complement(1774306..1774776) Porphyromonas gingivalis W83 2552568 NP_905805.1 CDS PG1690 NC_002950.2 1775261 1775863 R similar to GB:X75342, and PID:406738; identified by sequence similarity; putative; Sua5/YciO/YrdC/YwlC family protein complement(1775261..1775863) Porphyromonas gingivalis W83 2552564 NP_905806.1 CDS PG1691 NC_002950.2 1775870 1776574 R hypothetical protein complement(1775870..1776574) Porphyromonas gingivalis W83 2552585 NP_905807.1 CDS PG1692 NC_002950.2 1776604 1777263 R ABC transporter ATP-binding protein complement(1776604..1777263) Porphyromonas gingivalis W83 2552565 NP_905808.1 CDS PG1693 NC_002950.2 1777260 1778009 R HesA/MoeB/ThiF family protein complement(1777260..1778009) Porphyromonas gingivalis W83 2552572 NP_905809.1 CDS PG1694 NC_002950.2 1778006 1779100 R hypothetical protein complement(1778006..1779100) Porphyromonas gingivalis W83 2552538 NP_905810.1 CDS PG1695 NC_002950.2 1779580 1779771 D hypothetical protein 1779580..1779771 Porphyromonas gingivalis W83 2552556 NP_905811.1 CDS PG1696 NC_002950.2 1780113 1781150 D Possibly an isoschizomer of LlaBIIM.; type II DNA modification methyltransferase 1780113..1781150 Porphyromonas gingivalis W83 2552555 NP_905812.1 CDS PG1697 NC_002950.2 1781160 1785134 D Possibly an isoschizomer of LlaBIIR.; type II restriction endonuclease 1781160..1785134 Porphyromonas gingivalis W83 2552553 NP_905813.1 CDS PG1701 NC_002950.2 1786235 1788043 R glutamine amidotransferase complement(1786235..1788043) Porphyromonas gingivalis W83 2552552 NP_905814.1 CDS gyrB NC_002950.2 1788036 1790000 R DNA gyrase subunit B complement(1788036..1790000) Porphyromonas gingivalis W83 2552582 NP_905815.1 CDS mazG NC_002950.2 1790058 1790843 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase complement(1790058..1790843) Porphyromonas gingivalis W83 2552579 NP_905816.1 CDS PG1704 NC_002950.2 1790861 1792909 R thiol:disulfide interchange protein dsbD complement(1790861..1792909) Porphyromonas gingivalis W83 2552576 NP_905817.1 CDS PG1706 NC_002950.2 1793939 1794301 R hypothetical protein complement(1793939..1794301) Porphyromonas gingivalis W83 2552566 NP_905818.1 CDS PG1707 NC_002950.2 1794322 1794687 R identified by match to PFAM protein family HMM PF04977; hypothetical protein complement(1794322..1794687) Porphyromonas gingivalis W83 2552516 NP_905819.1 CDS PG1709 NC_002950.2 1795054 1795443 D ISPg5, transposase Orf1 1795054..1795443 Porphyromonas gingivalis W83 2552490 NP_905820.1 CDS PG1710 NC_002950.2 1795497 1796435 D identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 1795497..1796435 Porphyromonas gingivalis W83 2552489 NP_905821.1 CDS PG1711 NC_002950.2 1796742 1799003 R alpha-1,2-mannosidase complement(1796742..1799003) Porphyromonas gingivalis W83 2552535 NP_905822.1 CDS PG1712 NC_002950.2 1799070 1801415 R alpha-1,2-mannosidase complement(1799070..1801415) Porphyromonas gingivalis W83 2552534 NP_905823.1 CDS PG1713 NC_002950.2 1801497 1801901 R putative lipoprotein complement(1801497..1801901) Porphyromonas gingivalis W83 2552512 NP_905824.1 CDS pdxH NC_002950.2 1801938 1802582 R pyridoxamine-phosphate oxidase complement(1801938..1802582) Porphyromonas gingivalis W83 2552531 NP_905825.1 CDS PG1715 NC_002950.2 1803483 1806146 R hypothetical protein complement(1803483..1806146) Porphyromonas gingivalis W83 2552503 NP_905826.1 CDS PG1718 NC_002950.2 1806622 1806897 R hypothetical protein complement(1806622..1806897) Porphyromonas gingivalis W83 2552525 NP_905827.1 CDS PG1719 NC_002950.2 1806889 1808739 D similar to GB:M96669, SP:Q04937, PID:149490, GB:X61177, SP:Q01344, PID:1247445, PID:1247447, PID:186343, PID:186345, PID:186388, PID:33840, PID:33844, PID:36466, and PID:825601; identified by sequence similarity; putative; ABC transporter ATP-binding protein 1806889..1808739 Porphyromonas gingivalis W83 2552497 NP_905828.1 CDS PG1720 NC_002950.2 1808755 1810284 D similar to GB:X80506, SP:P45783, PID:516863, GB:X80506, SP:P45783, and PID:516863; identified by sequence similarity; putative; hypothetical protein 1808755..1810284 Porphyromonas gingivalis W83 2552509 NP_905829.1 CDS vacB NC_002950.2 1810424 1812532 D similar to SP:P31631, GB:M62363, and PID:150518; identified by sequence similarity; putative; ribonuclease R 1810424..1812532 Porphyromonas gingivalis W83 2552507 NP_905830.1 CDS PG1722 NC_002950.2 1812723 1813028 R hypothetical protein complement(1812723..1813028) Porphyromonas gingivalis W83 2552492 NP_905831.1 CDS rpsT NC_002950.2 1813209 1813463 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1813209..1813463 Porphyromonas gingivalis W83 2552468 NP_905832.1 CDS gcp NC_002950.2 1813881 1814906 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1813881..1814906 Porphyromonas gingivalis W83 2552462 NP_905833.1 CDS PG1725 NC_002950.2 1814906 1815388 D identified by match to TIGR protein family HMM TIGR00199; competence/damage inducible protein CinA 1814906..1815388 Porphyromonas gingivalis W83 2552484 NP_905834.1 CDS PG1726 NC_002950.2 1815421 1816839 D PDZ domain-containing protein 1815421..1816839 Porphyromonas gingivalis W83 2552449 NP_905835.1 CDS yitL NC_002950.2 1816849 1817712 D similar to SP:P08063, PID:154718, and PID:154801; identified by sequence similarity; putative; hypothetical protein 1816849..1817712 Porphyromonas gingivalis W83 2552426 NP_905836.1 CDS PG1728 NC_002950.2 1817784 1818236 D identified by match to PFAM protein family HMM PF00383; cytidine/deoxycytidylate deaminase 1817784..1818236 Porphyromonas gingivalis W83 2552453 NP_905837.1 CDS PG1729 NC_002950.2 1818432 1818971 R similar to SP:P14250, and PID:148571; identified by sequence similarity; putative; thiol peroxidase complement(1818432..1818971) Porphyromonas gingivalis W83 2552409 NP_905838.1 CDS PG1730 NC_002950.2 1819017 1819667 R similar to GB:L07024, and PID:142778; identified by sequence similarity; putative; O-methyltransferase complement(1819017..1819667) Porphyromonas gingivalis W83 2552430 NP_905839.1 CDS aroQ NC_002950.2 1819768 1820193 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(1819768..1820193) Porphyromonas gingivalis W83 2552429 NP_905840.1 CDS xerD NC_002950.2 1820311 1821237 D similar to GB:D00173, GB:S46963, SP:P11712, SP:P11713, SP:P33259, SP:P33261, PID:181362, PID:181364, PID:181366, and PID:219571; identified by sequence similarity; putative; integrase/recombinase XerD 1820311..1821237 Porphyromonas gingivalis W83 2552438 NP_905841.1 CDS PG1733 NC_002950.2 1821276 1821713 R hypothetical protein complement(1821276..1821713) Porphyromonas gingivalis W83 2552443 NP_905842.1 CDS PG1734 NC_002950.2 1821710 1822651 R transporter complement(1821710..1822651) Porphyromonas gingivalis W83 2552411 NP_905843.1 CDS PG1735 NC_002950.2 1822618 1823172 R MutT/nudix family protein complement(1822618..1823172) Porphyromonas gingivalis W83 2552450 NP_905844.1 CDS PG1738 NC_002950.2 1824187 1825221 R hypothetical protein complement(1824187..1825221) Porphyromonas gingivalis W83 2552455 NP_905845.1 CDS PG1739 NC_002950.2 1825218 1825799 R hypothetical protein complement(1825218..1825799) Porphyromonas gingivalis W83 2552436 NP_905846.1 CDS aspA NC_002950.2 1825946 1827373 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(1825946..1827373) Porphyromonas gingivalis W83 2551370 NP_905847.1 CDS PG1742 NC_002950.2 1827390 1827566 D hypothetical protein 1827390..1827566 Porphyromonas gingivalis W83 2551482 NP_905848.1 CDS kdsA NC_002950.2 1827620 1828438 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1827620..1828438) Porphyromonas gingivalis W83 2551463 NP_905849.1 CDS PG1745 NC_002950.2 1829525 1831114 R similar to SP:P13467, SP:P16155, SP:P23732, SP:P17451, SP:P19542, SP:P06597, SP:P23114, SP:P23421, GB:X16007, SP:P08780, GB:J03813, GB:L35605, GB:L35606, GB:M14738, GB:M17342, GB:M33635, GB:M33636, GB:M35099, GB:M36533, GB:M58938, GB:X55700, GB:X62921, PID:1321799, PID:2076876, SP:P13467, SP:P16155, SP:P23732, SP:P17451, SP:P19542, SP:P06597, SP:P23114, SP:P23421, GB:X52080, SP:P08780, GB:J03813, GB:L35605, GB:L35606, GB:M14738, GB:M17342, GB:M33635, GB:M33636, GB:M35099, GB:M36533, GB:M58938, GB:X55700, GB:X62921, PID:1321799, PID:2076876, SP:P13467, SP:P16155, SP:P23732, SP:P17451, SP:P19542, SP:P06597, SP:P23114, SP:P23421, GB:X52557, SP:P08780, GB:J03813, GB:L35605, GB:L35606, GB:M14738, GB:M17342, GB:M33635, GB:M33636, GB:M35099, GB:M36533, GB:M58938, GB:X55700, GB:X62921, PID:1321799, and PID:2076876; identified by sequence similarity; putative; phosphoribulokinase complement(1829525..1831114) Porphyromonas gingivalis W83 2551417 NP_905850.1 CDS PG1746 NC_002950.2 1831190 1832320 R similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase complement(1831190..1832320) Porphyromonas gingivalis W83 2551454 NP_905851.1 CDS PG1747 NC_002950.2 1832468 1832905 R ribose 5-phosphate isomerase B complement(1832468..1832905) Porphyromonas gingivalis W83 2551393 NP_905852.1 CDS tkt NC_002950.2 1832992 1835019 R transketolase complement(1832992..1835019) Porphyromonas gingivalis W83 2551396 NP_905853.1 CDS PG1750 NC_002950.2 1835463 1837283 D identified by match to PFAM protein family HMM PF00754; alpha-1,3/4-fucosidase 1835463..1837283 Porphyromonas gingivalis W83 2551488 NP_905854.1 CDS PG1751 NC_002950.2 1837420 1838550 D class V aminotransferase 1837420..1838550 Porphyromonas gingivalis W83 2551397 NP_905855.1 CDS PG1752 NC_002950.2 1838534 1838758 D hypothetical protein 1838534..1838758 Porphyromonas gingivalis W83 2551411 NP_905856.1 CDS selD NC_002950.2 1838755 1839801 D selenide, water dikinase 1838755..1839801 Porphyromonas gingivalis W83 2551434 NP_905857.1 CDS PG1754 NC_002950.2 1839819 1842344 D hypothetical protein 1839819..1842344 Porphyromonas gingivalis W83 2551451 NP_905858.1 CDS fbaB NC_002950.2 1842487 1843368 R catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase complement(1842487..1843368) Porphyromonas gingivalis W83 2552379 NP_905859.1 CDS PG1757 NC_002950.2 1844021 1845052 R hypothetical protein complement(1844021..1845052) Porphyromonas gingivalis W83 2552376 NP_905860.1 CDS rpsO NC_002950.2 1845325 1845594 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1845325..1845594 Porphyromonas gingivalis W83 2552374 NP_905861.1 CDS PG1759 NC_002950.2 1845710 1846657 D similar to SP:P18501, and PID:39033; identified by sequence similarity; putative; adhesion protein 1845710..1846657 Porphyromonas gingivalis W83 2552373 NP_905862.1 CDS PG1760 NC_002950.2 1846647 1847276 D ABC transporter ATP-binding protein 1846647..1847276 Porphyromonas gingivalis W83 2552370 NP_905863.1 CDS PG1761 NC_002950.2 1847224 1847799 D identified by match to TIGR protein family HMM TIGR01575; acetyltransferase 1847224..1847799 Porphyromonas gingivalis W83 2552368 NP_905864.2 CDS secDF NC_002950.2 1848017 1850962 D part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 1848017..1850962 Porphyromonas gingivalis W83 2552333 NP_905865.1 CDS rnc NC_002950.2 1851089 1851802 R similar to GB:L06133, GB:L06476, SP:Q04656, PID:179253, PID:2052036, PID:2052038, PID:34705, PID:464228, PID:854136, and PID:987255; identified by sequence similarity; putative; ribonuclease III complement(1851089..1851802) Porphyromonas gingivalis W83 2552329 NP_905866.1 CDS fabF NC_002950.2 1851886 1853142 R 3-oxoacyl-ACP synthase complement(1851886..1853142) Porphyromonas gingivalis W83 2552383 NP_905867.1 CDS acpP NC_002950.2 1853152 1853388 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1853152..1853388) Porphyromonas gingivalis W83 2552337 NP_905868.1 CDS purN NC_002950.2 1853557 1854138 D similar to GB:Y00711, GB:X13794, GB:X13795, GB:X13796, GB:X13797, GB:X13798, GB:X13799, GB:X13800, SP:P07195, PID:1200083, PID:34329, GB:Y00711, GB:X13794, GB:X13795, GB:X13796, GB:X13797, GB:X13798, GB:X13799, GB:X13800, SP:P07195, PID:1200083, and PID:34329; identified by sequence similarity; putative; phosphoribosylglycinamide formyltransferase 1853557..1854138 Porphyromonas gingivalis W83 2552346 NP_905869.1 CDS PG1767 NC_002950.2 1854135 1855175 D putative lipoprotein 1854135..1855175 Porphyromonas gingivalis W83 2552344 NP_905870.1 CDS PG1768 NC_002950.2 1855201 1856742 D similar to GB:X06614, GB:S57794, SP:P10276, PID:1335286, PID:35874, PID:36157, PID:825712, GB:X55330, GB:M64073, GB:X55762, GB:M64075, GB:M64076, GB:U21281, GB:X61959, GB:U21273, GB:U21274, GB:U21275, GB:U21276, GB:U21277, GB:U21278, GB:U21279, GB:U21280, SP:P20933, PID:183334, PID:28534, PID:34760, PID:553306, and PID:732508; identified by sequence similarity; putative; magnesium chelatase subunit D/I family protein 1855201..1856742 Porphyromonas gingivalis W83 2552365 NP_905871.1 CDS PG1769 NC_002950.2 1856747 1857070 D hypothetical protein 1856747..1857070 Porphyromonas gingivalis W83 2552363 NP_905872.1 CDS PG1770 NC_002950.2 1857424 1858101 D hypothetical protein 1857424..1858101 Porphyromonas gingivalis W83 2552361 NP_905873.1 CDS pheS NC_002950.2 1858178 1859200 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1858178..1859200 Porphyromonas gingivalis W83 2552366 NP_905874.1 CDS nth NC_002950.2 1859219 1859893 D similar to SP:P23794, GB:X53263, PID:296865, PID:296866, GB:M17398, GB:M21941, GB:M21942, GB:Y00498, GB:M17397, GB:X51535, SP:P10632, PID:181326, PID:181368, PID:181370, PID:23885, PID:297404, and PID:30335; identified by sequence similarity; putative; endonuclease III 1859219..1859893 Porphyromonas gingivalis W83 2552358 NP_905875.1 CDS PG1773 NC_002950.2 1859955 1861292 D PAP2 superfamily protein 1859955..1861292 Porphyromonas gingivalis W83 2552402 NP_905876.1 CDS mfd NC_002950.2 1861269 1864637 R similar to GB:M81651, GB:M81652, SP:Q02383, PID:1147570, PID:307418, and PID:338239; identified by sequence similarity; putative; transcription-repair coupling factor complement(1861269..1864637) Porphyromonas gingivalis W83 2552401 NP_905877.1 CDS grpE NC_002950.2 1864984 1865568 D heat shock protein GrpE 1864984..1865568 Porphyromonas gingivalis W83 2552398 NP_905878.1 CDS dnaJ NC_002950.2 1865611 1866762 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ 1865611..1866762 Porphyromonas gingivalis W83 2552394 NP_905879.1 CDS PG1777 NC_002950.2 1866848 1867165 D similar to GB:L29189, SP:P39215, PID:459688, PID:1934800, and GB:AL009126; identified by sequence similarity; putative; hypothetical protein 1866848..1867165 Porphyromonas gingivalis W83 2552351 NP_905880.1 CDS PG1778 NC_002950.2 1867194 1867982 D similar to GB:J05412, GB:M18963, GB:L08010, GB:J05413, SP:P05451, SP:P48304, PID:190979, PID:190981, PID:474306, PID:474308, PID:487726, and PID:623413; identified by sequence similarity; putative; hypothetical protein 1867194..1867982 Porphyromonas gingivalis W83 2552349 NP_905881.1 CDS PG1779 NC_002950.2 1868064 1868558 D similar to GB:M69197, GB:X00442, GB:L29394, GB:K01763, GB:X00637, GB:X01793, GB:X01786, GB:X02206, GB:X01789, GB:X01791, GB:X00606, GB:M13908, GB:K00422, GB:M12387, GB:M10935, SP:P00737, SP:P00738, PID:1212947, PID:306880, and PID:758071; identified by sequence similarity; putative; hypothetical protein 1868064..1868558 Porphyromonas gingivalis W83 2552391 NP_905882.1 CDS bioF-3 NC_002950.2 1868926 1870113 D similar to GB:M10058, SP:P07306, and PID:179079; identified by sequence similarity; putative; 8-amino-7-oxononanoate synthase 1868926..1870113 Porphyromonas gingivalis W83 2552390 NP_905883.1 CDS udk NC_002950.2 1870163 1870792 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 1870163..1870792 Porphyromonas gingivalis W83 2552355 NP_905884.1 CDS PG1782 NC_002950.2 1870834 1872021 D hypothetical protein 1870834..1872021 Porphyromonas gingivalis W83 2552405 NP_905885.1 CDS PG1783 NC_002950.2 1872008 1872718 D glycosyl transferase group 2 family protein 1872008..1872718 Porphyromonas gingivalis W83 2551476 NP_905886.1 CDS PG1784 NC_002950.2 1872706 1873500 D hypothetical protein 1872706..1873500 Porphyromonas gingivalis W83 2551443 NP_905887.1 CDS PG1786 NC_002950.2 1874498 1875382 D hypothetical protein 1874498..1875382 Porphyromonas gingivalis W83 2551369 NP_905888.1 CDS PG1787 NC_002950.2 1875531 1875998 R hypothetical protein complement(1875531..1875998) Porphyromonas gingivalis W83 2552264 NP_905889.1 CDS PG1788 NC_002950.2 1876116 1877387 D similar to GB:L17071, SP:Q07602, GB:L17073, and PID:310302; identified by sequence similarity; putative; cysteine peptidase 1876116..1877387 Porphyromonas gingivalis W83 2552253 NP_905890.1 CDS dcp-2 NC_002950.2 1877507 1879543 R peptidyl-dipeptidase Dcp complement(1877507..1879543) Porphyromonas gingivalis W83 2552250 NP_905891.1 CDS PG1790 NC_002950.2 1879560 1881044 R hypothetical protein complement(1879560..1881044) Porphyromonas gingivalis W83 2552275 NP_905892.1 CDS PG1791 NC_002950.2 1881041 1881256 R hypothetical protein complement(1881041..1881256) Porphyromonas gingivalis W83 2552294 NP_905893.1 CDS PG1792 NC_002950.2 1881762 1884065 D identified by match to TIGR protein family HMM TIGR01695; sodium/hydrogen antiporter 1881762..1884065 Porphyromonas gingivalis W83 2552234 NP_905894.1 CDS glgB NC_002950.2 1884062 1886068 D 1,4-alpha-glucan branching protein 1884062..1886068 Porphyromonas gingivalis W83 2552291 NP_905895.1 CDS polA NC_002950.2 1886118 1888898 D similar to GB:X72760, SP:P55268, PID:1103585, PID:1335202, and PID:288401; identified by sequence similarity; putative; DNA polymerase type I 1886118..1888898 Porphyromonas gingivalis W83 2552230 NP_905896.1 CDS PG1795 NC_002950.2 1889045 1889866 R hypothetical protein complement(1889045..1889866) Porphyromonas gingivalis W83 2552322 NP_905897.1 CDS PG1797 NC_002950.2 1890153 1893038 D DNA-binding response regulator/sensor histidine kinase 1890153..1893038 Porphyromonas gingivalis W83 2552312 NP_905898.1 CDS PG1798 NC_002950.2 1893118 1894335 R hypothetical protein complement(1893118..1894335) Porphyromonas gingivalis W83 2552319 NP_905899.1 CDS PG1799 NC_002950.2 1894639 1894848 D hypothetical protein 1894639..1894848 Porphyromonas gingivalis W83 2552321 NP_905900.1 CDS PG1801 NC_002950.2 1895086 1895676 D similar to SP:P00437; identified by sequence similarity; putative; v-type ATPase subunit E 1895086..1895676 Porphyromonas gingivalis W83 2552309 NP_905901.1 CDS PG1802 NC_002950.2 1895680 1896618 D hypothetical protein 1895680..1896618 Porphyromonas gingivalis W83 2552303 NP_905902.1 CDS atpA NC_002950.2 1896628 1898382 D produces ATP from ADP in the presence of a proton gradient across the membrane; the A subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit A 1896628..1898382 Porphyromonas gingivalis W83 2552295 NP_905903.1 CDS atpB NC_002950.2 1898394 1899713 D produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit B 1898394..1899713 Porphyromonas gingivalis W83 2552293 NP_905904.1 CDS atpD NC_002950.2 1899729 1900343 D produces ATP from ADP in the presence of a proton gradient across the membrane; the D subunit is part of the catalytic core of the ATP synthase complex; V-type ATP synthase subunit D 1899729..1900343 Porphyromonas gingivalis W83 2552285 NP_905905.1 CDS atpI NC_002950.2 1900340 1902154 D similar to SP:P19371; identified by sequence similarity; putative; v-type ATPase subunit I 1900340..1902154 Porphyromonas gingivalis W83 2552280 NP_905906.1 CDS atpK NC_002950.2 1902209 1902685 D similar to GB:Z31397, PID:1335178, PID:1335181, PID:32850, PID:33129, PID:505450, PID:510299, PID:510301, PID:510303, PID:510392, PID:510394, PID:510396, PID:510398, PID:510400, PID:510404, PID:553403, PID:577484, PID:587249, PID:587259, PID:940518, PID:940520, PID:998277, GB:J05249, SP:P15927, and PID:337350; identified by sequence similarity; putative; v-type ATPase subunit K 1902209..1902685 Porphyromonas gingivalis W83 2552274 NP_905907.1 CDS spoT NC_002950.2 1903045 1905333 R similar to GB:L28806, GB:Z29976, PID:454966, and PID:515737; identified by sequence similarity; putative; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase complement(1903045..1905333) Porphyromonas gingivalis W83 2552271 NP_905908.1 CDS PG1809 NC_002950.2 1905581 1906126 R similar to SP:P37737, and PID:150760; identified by sequence similarity; putative; 2-oxoglutarate oxidoreductase subunit gamma complement(1905581..1906126) Porphyromonas gingivalis W83 2552267 NP_905909.1 CDS PG1810 NC_002950.2 1906155 1906847 R 2-oxoglutarate oxidoreductase subunit beta complement(1906155..1906847) Porphyromonas gingivalis W83 2552263 NP_905910.1 CDS PG1811 NC_002950.2 1906943 1907035 D hypothetical protein 1906943..1907035 Porphyromonas gingivalis W83 2552258 NP_905911.1 CDS PG1812 NC_002950.2 1907136 1908197 R catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase complement(1907136..1908197) Porphyromonas gingivalis W83 2552241 NP_905912.1 CDS PG1813 NC_002950.2 1908237 1908464 R similar to GB:L19532, PID:388269, and PID:475429; identified by sequence similarity; putative; ferredoxin, 4Fe-4S complement(1908237..1908464) Porphyromonas gingivalis W83 2552005 NP_905913.1 CDS dnaG NC_002950.2 1908696 1910717 R similar to GB:X52947, GB:M65188, SP:P17302, PID:181209, and PID:29917; identified by sequence similarity; putative; DNA primase complement(1908696..1910717) Porphyromonas gingivalis W83 2551365 NP_905914.1 CDS kdsB NC_002950.2 1910759 1911523 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(1910759..1911523) Porphyromonas gingivalis W83 2552004 NP_905915.1 CDS PG1816 NC_002950.2 1911520 1912041 R identified by match to PFAM protein family HMM PF02525; quinone family NAD(P)H dehydrogenase complement(1911520..1912041) Porphyromonas gingivalis W83 2552006 NP_905916.1 CDS PG1817 NC_002950.2 1912310 1913125 R similar to SP:P30692, PID:45253, SP:P30692, and PID:45253; identified by sequence similarity; putative; hypothetical protein complement(1912310..1913125) Porphyromonas gingivalis W83 2551999 NP_905917.1 CDS PG1818 NC_002950.2 1913118 1913834 R hypothetical protein complement(1913118..1913834) Porphyromonas gingivalis W83 2552016 NP_905918.1 CDS PG1819 NC_002950.2 1913786 1914412 R hypothetical protein complement(1913786..1914412) Porphyromonas gingivalis W83 2551987 NP_905919.1 CDS nrfA NC_002950.2 1914483 1915979 R catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 complement(1914483..1915979) Porphyromonas gingivalis W83 2551461 NP_905920.1 CDS nrfH NC_002950.2 1916001 1916612 R cytochrome c nitrite reductase small subunit NrfH complement(1916001..1916612) Porphyromonas gingivalis W83 2552003 NP_905921.1 CDS PG1823 NC_002950.2 1917457 1918110 D hypothetical protein 1917457..1918110 Porphyromonas gingivalis W83 2551970 NP_905922.1 CDS eno NC_002950.2 1918243 1919520 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1918243..1919520) Porphyromonas gingivalis W83 2551984 NP_905923.1 CDS PG1825 NC_002950.2 1919600 1919761 R hypothetical protein complement(1919600..1919761) Porphyromonas gingivalis W83 2551942 NP_905924.1 CDS PG1826 NC_002950.2 1919736 1920155 R hypothetical protein complement(1919736..1920155) Porphyromonas gingivalis W83 2551973 NP_905925.1 CDS PG1827 NC_002950.2 1920154 1920795 D ECF subfamily RNA polymerase sigma factor 1920154..1920795 Porphyromonas gingivalis W83 2551964 NP_905926.1 CDS PG1828 NC_002950.2 1921014 1921226 R putative lipoprotein complement(1921014..1921226) Porphyromonas gingivalis W83 2551941 NP_905927.1 CDS PG1829 NC_002950.2 1921397 1923070 R similar to GB:M68061, SP:P04740, PID:147073, and PID:41881; identified by sequence similarity; putative; long-chain-fatty-acid--CoA ligase complement(1921397..1923070) Porphyromonas gingivalis W83 2551945 NP_905928.1 CDS recQ-2 NC_002950.2 1923545 1925512 R ATP-dependent DNA helicase RecQ complement(1923545..1925512) Porphyromonas gingivalis W83 2551932 NP_905929.1 CDS PG1834 NC_002950.2 1926295 1927110 D similar to GB:M55263, SP:P22322, PID:143022, PID:403481, PID:1303801, GB:AL009126, GB:X51445, GB:X56653, GB:X51440, SP:P02735, PID:1160969, PID:337743, PID:36310, PID:36317, PID:36321, PID:758679, PID:758681, PID:758683, PID:825714, PID:825715, PID:825716, PID:825717, and PID:939926; identified by sequence similarity; putative; glycogen synthase-like protein 1926295..1927110 Porphyromonas gingivalis W83 2551919 NP_905930.1 CDS PG1835 NC_002950.2 1927213 1928580 D putative lipoprotein 1927213..1928580 Porphyromonas gingivalis W83 2551904 NP_905931.1 CDS nupG NC_002950.2 1928683 1929918 D similar to GB:L05628, GB:X78338, SP:P33527, PID:1835659, and PID:1871200; identified by sequence similarity; putative; nucleoside permease NupG 1928683..1929918 Porphyromonas gingivalis W83 2551895 NP_905932.1 CDS PG1837 NC_002950.2 1930477 1936794 D similar to GB:D26185, SP:P26497, GB:M59938, PID:143640, PID:40031, PID:467380, and GB:AL009126; identified by sequence similarity; putative; hemagglutinin protein HagA 1930477..1936794 Porphyromonas gingivalis W83 2551934 NP_905933.1 CDS PG1840 NC_002950.2 1937242 1937355 D similar to SP:P31128; identified by sequence similarity; putative; hypothetical protein 1937242..1937355 Porphyromonas gingivalis W83 2551877 NP_905934.1 CDS PG1841 NC_002950.2 1937450 1938373 D similar to GB:S48322, GB:X68059, SP:Q04968, SP:Q09088, GB:L36036, GB:S72439, GB:X62161, GB:X62387, GB:X65599, GB:X68540, GB:X69323, GB:X70365, GB:X81047, GB:Z29087, PID:1235758, PID:288383, PID:288389, PID:39387, PID:39389, PID:436060, PID:441227, PID:483557, PID:809623, PID:984066, PID:984072, PID:984074, PID:688403, PID:1762839, and PID:1762841; identified by sequence similarity; putative; hypothetical protein 1937450..1938373 Porphyromonas gingivalis W83 2551875 NP_905935.1 CDS PG1842 NC_002950.2 1938381 1939373 D acetyltransferase 1938381..1939373 Porphyromonas gingivalis W83 2551885 NP_905936.1 CDS PG1846 NC_002950.2 1946177 1946314 D hypothetical protein 1946177..1946314 Porphyromonas gingivalis W83 2551848 NP_905937.1 CDS PG1847 NC_002950.2 1946317 1946697 R endoribonuclease L-PSP complement(1946317..1946697) Porphyromonas gingivalis W83 2551873 NP_905938.1 CDS PG1848 NC_002950.2 1946723 1947472 R RNA methyltransferase complement(1946723..1947472) Porphyromonas gingivalis W83 2551837 NP_905939.1 CDS recN NC_002950.2 1947469 1949124 R DNA repair protein RecN complement(1947469..1949124) Porphyromonas gingivalis W83 2551854 NP_905940.1 CDS PG1850 NC_002950.2 1949139 1950047 R hypothetical protein complement(1949139..1950047) Porphyromonas gingivalis W83 2551851 NP_905941.1 CDS coaBC NC_002950.2 1950044 1951258 R phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(1950044..1951258) Porphyromonas gingivalis W83 2551824 NP_905942.1 CDS PG1852 NC_002950.2 1951284 1952063 R similar to GB:X52592, and PID:46994; identified by sequence similarity; putative; exonuclease complement(1951284..1952063) Porphyromonas gingivalis W83 2551838 NP_905943.1 CDS dnaN NC_002950.2 1952076 1953209 R DNA polymerase III subunit beta complement(1952076..1953209) Porphyromonas gingivalis W83 2551836 NP_905944.1 CDS PG1854 NC_002950.2 1953415 1953972 R similar to GB:U02373, PID:407279, and PID:1100880; identified by sequence similarity; putative; 5-formyltetrahydrofolate cyclo-ligase complement(1953415..1953972) Porphyromonas gingivalis W83 2551826 NP_905945.1 CDS PG1855 NC_002950.2 1953932 1955566 R carboxyl-terminal protease complement(1953932..1955566) Porphyromonas gingivalis W83 2551827 NP_905946.1 CDS PG1856 NC_002950.2 1955574 1956029 R similar to SP:P13063, and SP:P13064; identified by sequence similarity; putative; cytidine/deoxycytidylate deaminase complement(1955574..1956029) Porphyromonas gingivalis W83 2551822 NP_905947.1 CDS PG1857 NC_002950.2 1956110 1956463 R similar to GP:19916677; identified by sequence similarity; putative; hypothetical protein complement(1956110..1956463) Porphyromonas gingivalis W83 2551814 NP_905948.1 CDS PG1858 NC_002950.2 1956628 1957125 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(1956628..1957125) Porphyromonas gingivalis W83 2551815 NP_905949.1 CDS PG1859 NC_002950.2 1957264 1958424 R glycerate kinase complement(1957264..1958424) Porphyromonas gingivalis W83 2551813 NP_905950.1 CDS PG1860 NC_002950.2 1958664 1959848 R hypothetical protein complement(1958664..1959848) Porphyromonas gingivalis W83 2551808 NP_905951.1 CDS PG1861 NC_002950.2 1959977 1960147 R hypothetical protein complement(1959977..1960147) Porphyromonas gingivalis W83 2551805 NP_905952.1 CDS PG1862 NC_002950.2 1960160 1960453 R hypothetical protein complement(1960160..1960453) Porphyromonas gingivalis W83 2551800 NP_905953.1 CDS PG1863 NC_002950.2 1960454 1960606 R hypothetical protein complement(1960454..1960606) Porphyromonas gingivalis W83 2551798 NP_905954.1 CDS PG1864 NC_002950.2 1960599 1964399 R leucine-rich protein complement(1960599..1964399) Porphyromonas gingivalis W83 2551797 NP_905955.1 CDS PG1866 NC_002950.2 1964671 1964796 D hypothetical protein 1964671..1964796 Porphyromonas gingivalis W83 2551784 NP_905956.1 CDS PG1868 NC_002950.2 1965188 1965709 R similar to GB:L11373, GB:L11371, GB:L11372, PID:307329, PID:387677, GB:L11373, GB:L11371, GB:L11372, PID:307329, and PID:387677; identified by sequence similarity; putative; hypothetical protein complement(1965188..1965709) Porphyromonas gingivalis W83 2551791 NP_905957.1 CDS PG1869 NC_002950.2 1965745 1965912 R hypothetical protein complement(1965745..1965912) Porphyromonas gingivalis W83 2551795 NP_905958.1 CDS PG1870 NC_002950.2 1965958 1966617 R similar to SP:P11430, SP:P16529, GB:S51490, GB:D00217, and PID:262707; identified by sequence similarity; putative; UbiE/COQ5 family methlytransferase complement(1965958..1966617) Porphyromonas gingivalis W83 2551767 NP_905959.1 CDS PG1871 NC_002950.2 1966659 1966949 R hypothetical protein complement(1966659..1966949) Porphyromonas gingivalis W83 2551771 NP_905960.1 CDS hutU NC_002950.2 1967022 1969001 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(1967022..1969001) Porphyromonas gingivalis W83 2551777 NP_905961.1 CDS PG1874 NC_002950.2 1969343 1969750 R hypothetical protein complement(1969343..1969750) Porphyromonas gingivalis W83 2551779 NP_905962.1 CDS PG1875 NC_002950.2 1969737 1970711 R hemolysin complement(1969737..1970711) Porphyromonas gingivalis W83 2551780 NP_905963.1 CDS PG1876 NC_002950.2 1970723 1971550 R similar to GB:L20470, GB:L22431, GB:D16495, GB:D16508, GB:D16510, GB:D16512, GB:D16514, GB:D16516, GB:D16518, GB:D16520, GB:D16522, GB:D16523, GB:D16524, GB:D16525, GB:D16526, GB:D16527, GB:D16528, GB:D16529, GB:D16530, GB:D16531, GB:D16532, GB:D16493, SP:P98155, PID:391734, PID:407221, PID:409426, and PID:437387; identified by sequence similarity; putative; hypothetical protein complement(1970723..1971550) Porphyromonas gingivalis W83 2551759 NP_905964.1 CDS nhaA NC_002950.2 1971579 1972937 R Na+/H+ antiporter complement(1971579..1972937) Porphyromonas gingivalis W83 2551765 NP_905965.1 CDS cysS NC_002950.2 1973068 1974540 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1973068..1974540 Porphyromonas gingivalis W83 2551751 NP_905966.1 CDS PG1879 NC_002950.2 1974591 1975610 D similar to GB:M36711, GB:M61156, GB:X77343, and SP:P05549; identified by sequence similarity; putative; hypothetical protein 1974591..1975610 Porphyromonas gingivalis W83 2551754 NP_905967.1 CDS PG1880 NC_002950.2 1975621 1976631 D similar to SP:P02928, GB:M12644, GB:J01648, GB:M12637, GB:V00303, GB:X03923, and PID:146770; identified by sequence similarity; putative; glycosyl transferase group 2 family protein 1975621..1976631 Porphyromonas gingivalis W83 2551758 NP_905968.1 CDS PG1881 NC_002950.2 1976664 1978106 D hypothetical protein 1976664..1978106 Porphyromonas gingivalis W83 2551756 NP_905969.1 CDS PG1884 NC_002950.2 1979058 1981082 R similar to GB:M63675, SP:Q00561, PID:149367, and PID:149422; identified by sequence similarity; putative; alpha-L-fucosidase complement(1979058..1981082) Porphyromonas gingivalis W83 2551741 NP_905970.1 CDS ppk NC_002950.2 1981155 1983242 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(1981155..1983242) Porphyromonas gingivalis W83 2551750 NP_905971.1 CDS hflX NC_002950.2 1983406 1984626 R GTP-binding protein HflX complement(1983406..1984626) Porphyromonas gingivalis W83 2551727 NP_905972.1 CDS PG1887 NC_002950.2 1984705 1985739 D catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1984705..1985739 Porphyromonas gingivalis W83 2551734 NP_905973.1 CDS PG1888 NC_002950.2 1985736 1986350 D hypothetical protein 1985736..1986350 Porphyromonas gingivalis W83 2551737 NP_905974.1 CDS PG1889 NC_002950.2 1986491 1987150 D hypothetical protein 1986491..1987150 Porphyromonas gingivalis W83 2551714 NP_905975.1 CDS PG1890 NC_002950.2 1987705 1987932 D putative lipoprotein 1987705..1987932 Porphyromonas gingivalis W83 2551715 NP_905976.1 CDS PG1891 NC_002950.2 1987996 1988505 D hypothetical protein 1987996..1988505 Porphyromonas gingivalis W83 2551719 NP_905977.1 CDS PG1892 NC_002950.2 1989565 1989951 D hypothetical protein 1989565..1989951 Porphyromonas gingivalis W83 2551696 NP_905978.1 CDS PG1893 NC_002950.2 1991100 1991873 D hypothetical protein 1991100..1991873 Porphyromonas gingivalis W83 2551698 NP_905979.1 CDS PG1894 NC_002950.2 1992417 1992995 D hypothetical protein 1992417..1992995 Porphyromonas gingivalis W83 2551701 NP_905980.1 CDS PG1895 NC_002950.2 1993602 1994300 D hypothetical protein 1993602..1994300 Porphyromonas gingivalis W83 2551673 NP_905981.1 CDS metK NC_002950.2 1994726 1996015 D methionine adenosyltransferase; catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1994726..1996015 Porphyromonas gingivalis W83 2551678 NP_905982.1 CDS PG1897 NC_002950.2 1996143 1996820 R similar to SP:P26236, and PID:46105; identified by sequence similarity; putative; thiamin pyrophosphokinase catalytic subunit complement(1996143..1996820) Porphyromonas gingivalis W83 2551674 NP_905983.1 CDS PG1898 NC_002950.2 1996817 1997425 R transporter complement(1996817..1997425) Porphyromonas gingivalis W83 2551690 NP_905984.1 CDS PG1899 NC_002950.2 1997430 1999814 R TonB-dependent receptor complement(1997430..1999814) Porphyromonas gingivalis W83 2551669 NP_905985.1 CDS PG1900 NC_002950.2 1999889 2000836 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(1999889..2000836) Porphyromonas gingivalis W83 2551670 NP_905986.2 CDS frr NC_002950.2 2000921 2001481 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2000921..2001481) Porphyromonas gingivalis W83 2551651 NP_905987.1 CDS pyrH NC_002950.2 2001518 2002237 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2001518..2002237) Porphyromonas gingivalis W83 2551652 NP_905988.1 CDS PG1903 NC_002950.2 2002320 2004311 R similar to GB:X58178, GB:U20101, GB:U20102, GB:U20103, GB:U20104, GB:X66816, and PID:47363; identified by sequence similarity; putative; hypothetical protein complement(2002320..2004311) Porphyromonas gingivalis W83 2551667 NP_905989.1 CDS PG1904 NC_002950.2 2004522 2004851 R hypothetical protein complement(2004522..2004851) Porphyromonas gingivalis W83 2551668 NP_905990.1 CDS PG1906 NC_002950.2 2005547 2006632 D ISPg1, transposase 2005547..2006632 Porphyromonas gingivalis W83 2551646 NP_905991.1 CDS PG1908 NC_002950.2 2007935 2008780 D hypothetical protein 2007935..2008780 Porphyromonas gingivalis W83 2551637 NP_905992.1 CDS rplQ NC_002950.2 2010372 2010854 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2010372..2010854) Porphyromonas gingivalis W83 2551616 NP_905993.1 CDS rpoA NC_002950.2 2010860 2011852 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2010860..2011852) Porphyromonas gingivalis W83 2551615 NP_905994.1 CDS rpsD NC_002950.2 2011865 2012470 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2011865..2012470) Porphyromonas gingivalis W83 2551581 NP_905995.1 CDS rpsK NC_002950.2 2012630 2013016 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2012630..2013016) Porphyromonas gingivalis W83 2551583 NP_905996.1 CDS rpsM NC_002950.2 2013028 2013408 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2013028..2013408) Porphyromonas gingivalis W83 2551582 NP_905997.1 CDS rpmJ NC_002950.2 2013441 2013557 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(2013441..2013557) Porphyromonas gingivalis W83 2551561 NP_905998.1 CDS infA NC_002950.2 2013574 2013792 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2013574..2013792) Porphyromonas gingivalis W83 2551585 NP_905999.1 CDS map NC_002950.2 2013795 2014580 R methionine aminopeptidase complement(2013795..2014580) Porphyromonas gingivalis W83 2551573 NP_906000.1 CDS secY NC_002950.2 2014580 2015920 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(2014580..2015920) Porphyromonas gingivalis W83 2551551 NP_906001.1 CDS rplO NC_002950.2 2015925 2016371 R late assembly protein; 50S ribosomal protein L15 complement(2015925..2016371) Porphyromonas gingivalis W83 2551556 NP_906002.1 CDS rpmD NC_002950.2 2016397 2016573 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(2016397..2016573) Porphyromonas gingivalis W83 2551555 NP_906003.1 CDS rpsE NC_002950.2 2016593 2017111 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2016593..2017111) Porphyromonas gingivalis W83 2551559 NP_906004.1 CDS rplR NC_002950.2 2017117 2017461 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(2017117..2017461) Porphyromonas gingivalis W83 2551528 NP_906005.1 CDS rplF NC_002950.2 2017480 2018031 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2017480..2018031) Porphyromonas gingivalis W83 2551539 NP_906006.1 CDS rpsH NC_002950.2 2018050 2018445 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2018050..2018445) Porphyromonas gingivalis W83 2552212 NP_906007.1 CDS rpsN NC_002950.2 2018496 2018765 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(2018496..2018765) Porphyromonas gingivalis W83 2552222 NP_906008.1 CDS rplE NC_002950.2 2018767 2019327 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2018767..2019327) Porphyromonas gingivalis W83 2552200 NP_906009.1 CDS rplX NC_002950.2 2019327 2019647 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2019327..2019647) Porphyromonas gingivalis W83 2552228 NP_906010.1 CDS rplN NC_002950.2 2019670 2020035 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2019670..2020035) Porphyromonas gingivalis W83 2552219 NP_906011.1 CDS rpsQ NC_002950.2 2020037 2020291 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2020037..2020291) Porphyromonas gingivalis W83 2552209 NP_906012.1 CDS rpmC NC_002950.2 2020305 2020499 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2020305..2020499) Porphyromonas gingivalis W83 2552215 NP_906013.1 CDS rplP NC_002950.2 2020505 2020939 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2020505..2020939) Porphyromonas gingivalis W83 2552217 NP_906014.1 CDS rpsC NC_002950.2 2020960 2021700 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2020960..2021700) Porphyromonas gingivalis W83 2552204 NP_906015.1 CDS rplV NC_002950.2 2021707 2022057 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2021707..2022057) Porphyromonas gingivalis W83 2552207 NP_906016.1 CDS rpsS NC_002950.2 2022166 2022435 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2022166..2022435) Porphyromonas gingivalis W83 2552202 NP_906017.1 CDS rplB NC_002950.2 2022458 2023282 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2022458..2023282) Porphyromonas gingivalis W83 2552203 NP_906018.1 CDS rplW NC_002950.2 2023289 2023582 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2023289..2023582) Porphyromonas gingivalis W83 2551540 NP_906019.1 CDS rplD NC_002950.2 2023597 2024226 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2023597..2024226) Porphyromonas gingivalis W83 2551995 NP_906020.1 CDS rplC NC_002950.2 2024226 2024843 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2024226..2024843) Porphyromonas gingivalis W83 2552196 NP_906021.1 CDS rpsJ NC_002950.2 2024866 2025171 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2024866..2025171) Porphyromonas gingivalis W83 2552192 NP_906022.1 CDS fusA NC_002950.2 2025187 2027310 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(2025187..2027310) Porphyromonas gingivalis W83 2552187 NP_906023.1 CDS rpsG NC_002950.2 2027323 2027799 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2027323..2027799) Porphyromonas gingivalis W83 2552166 NP_906024.1 CDS rpsL NC_002950.2 2028036 2028440 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2028036..2028440) Porphyromonas gingivalis W83 2552165 NP_906025.1 CDS PG1943 NC_002950.2 2029064 2030350 R hypothetical protein complement(2029064..2030350) Porphyromonas gingivalis W83 2552167 NP_906026.1 CDS aroA NC_002950.2 2030556 2031815 D similar to GB:M15815, SP:P10336, PID:142352, and PID:142385; identified by sequence similarity; putative; 3-phosphoshikimate 1-carboxyvinyltransferase 2030556..2031815 Porphyromonas gingivalis W83 2552164 NP_906027.1 CDS PG1945 NC_002950.2 2031837 2032280 D hypothetical protein 2031837..2032280 Porphyromonas gingivalis W83 2552163 NP_906028.1 CDS PG1946 NC_002950.2 2032273 2033079 D similar to SP:P33786, and PID:48912; identified by sequence similarity; putative; ABC transporter 2032273..2033079 Porphyromonas gingivalis W83 2552162 NP_906029.1 CDS PG1947 NC_002950.2 2033072 2036554 D identified by match to TIGR protein family HMM TIGR01696; hypothetical protein 2033072..2036554 Porphyromonas gingivalis W83 2552160 NP_906030.1 CDS PG1948 NC_002950.2 2036579 2038000 D putative lipoprotein 2036579..2038000 Porphyromonas gingivalis W83 2552159 NP_906031.1 CDS mdh NC_002950.2 2038274 2039278 R similar to GB:M19169, GB:J03870, SP:P01037, PID:337752, and PID:386825; identified by sequence similarity; putative; malate dehydrogenase complement(2038274..2039278) Porphyromonas gingivalis W83 2552158 NP_906032.1 CDS PG1950 NC_002950.2 2039740 2040900 D similar to GB:M80712, SP:P23619, and PID:141831; identified by sequence similarity; putative; hypothetical protein 2039740..2040900 Porphyromonas gingivalis W83 2552188 NP_906033.1 CDS glnS NC_002950.2 2041282 2042982 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2041282..2042982 Porphyromonas gingivalis W83 2552182 NP_906034.1 CDS PG1952 NC_002950.2 2043010 2043657 D similar to GB:X07856, and PID:44531; identified by sequence similarity; putative; DedA family protein 2043010..2043657 Porphyromonas gingivalis W83 2553372 NP_906035.1 CDS PG1953 NC_002950.2 2043714 2044649 D similar to GB:M27725, SP:P13719, and PID:145697; identified by sequence similarity; putative; hypothetical protein 2043714..2044649 Porphyromonas gingivalis W83 2553364 NP_906036.1 CDS PG1954 NC_002950.2 2044653 2045672 D NAD dependent epimerase/reductase-like protein 2044653..2045672 Porphyromonas gingivalis W83 2553356 NP_906037.1 CDS abfT-2 NC_002950.2 2046305 2047600 R 4-hydroxybutyrate CoA-transferase complement(2046305..2047600) Porphyromonas gingivalis W83 2553342 NP_906038.1 CDS rpmG NC_002950.2 2048307 2048495 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(2048307..2048495) Porphyromonas gingivalis W83 2553322 NP_906039.1 CDS rpmB NC_002950.2 2048514 2048753 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(2048514..2048753) Porphyromonas gingivalis W83 2553311 NP_906040.1 CDS PG1961 NC_002950.2 2048976 2051243 R hypothetical protein complement(2048976..2051243) Porphyromonas gingivalis W83 2553301 NP_906041.1 CDS PG1963 NC_002950.2 2052478 2053053 D similar to SP:P37719, GB:X54676, and PID:455537; identified by sequence similarity; putative; Sua5/YciO/YrdC/YwlC family protein 2052478..2053053 Porphyromonas gingivalis W83 2553280 NP_906042.1 CDS PG1964 NC_002950.2 2053050 2054456 D sugar transferase 2053050..2054456 Porphyromonas gingivalis W83 2553273 NP_906043.1 CDS PG1966 NC_002950.2 2056208 2057014 R similar to GB:X54868, SP:P26715, PID:35059, GB:X54868, SP:P26715, and PID:35059; identified by sequence similarity; putative; hypothetical protein complement(2056208..2057014) Porphyromonas gingivalis W83 2552148 NP_906044.1 CDS PG1967 NC_002950.2 2057308 2058195 D similar to GB:L12710, and PID:414576; identified by sequence similarity; putative; hypothetical protein 2057308..2058195 Porphyromonas gingivalis W83 2552147 NP_906045.1 CDS PG1968 NC_002950.2 2058550 2058654 R hypothetical protein complement(2058550..2058654) Porphyromonas gingivalis W83 2552146 NP_906046.1 CDS PG1969 NC_002950.2 2058703 2059605 R hypothetical protein complement(2058703..2059605) Porphyromonas gingivalis W83 2552145 NP_906047.1 CDS PG1970 NC_002950.2 2059574 2059873 R hypothetical protein complement(2059574..2059873) Porphyromonas gingivalis W83 2552144 NP_906048.1 CDS PG1972 NC_002950.2 2060142 2061263 D hemagglutinin protein HagB 2060142..2061263 Porphyromonas gingivalis W83 2552143 NP_906049.1 CDS PG1974 NC_002950.2 2062054 2063145 R hypothetical protein complement(2062054..2063145) Porphyromonas gingivalis W83 2553259 NP_906050.1 CDS PG1975 NC_002950.2 2063358 2064410 D similar to GB:M76559, SP:P54289, and PID:179762; identified by sequence similarity; putative; hemagglutinin protein HagC 2063358..2064410 Porphyromonas gingivalis W83 2553237 NP_906051.1 CDS PG1977 NC_002950.2 2064777 2066783 R hypothetical protein complement(2064777..2066783) Porphyromonas gingivalis W83 2553218 NP_906052.1 CDS PG1978 NC_002950.2 2066813 2067427 R hypothetical protein complement(2066813..2067427) Porphyromonas gingivalis W83 2553228 NP_906053.1 CDS PG1979 NC_002950.2 2067412 2067579 D hypothetical protein 2067412..2067579 Porphyromonas gingivalis W83 2553216 NP_906054.1 CDS PG1980 NC_002950.2 2067850 2068020 R hypothetical protein complement(2067850..2068020) Porphyromonas gingivalis W83 2553204 NP_906055.1 CDS cas2-1 NC_002950.2 2069305 2069595 R similar to SP:P30329, and PID:150728; identified by sequence similarity; putative; CRISPR-associated Cas2 family protein complement(2069305..2069595) Porphyromonas gingivalis W83 2553196 NP_906056.1 CDS PG1982 NC_002950.2 2069615 2072710 R CRISPR-associated Cas1 family protein complement(2069615..2072710) Porphyromonas gingivalis W83 2552124 NP_906057.1 CDS PG1983 NC_002950.2 2072771 2073532 R CRISPR-associated Cmr5 family protein complement(2072771..2073532) Porphyromonas gingivalis W83 2552123 NP_906058.1 CDS PG1984 NC_002950.2 2073529 2073972 R identified by match to TIGR protein family HMM TIGR01881; hypothetical protein complement(2073529..2073972) Porphyromonas gingivalis W83 2552122 NP_906059.1 CDS PG1985 NC_002950.2 2073969 2074670 R CRISPR-associated Cmr4 family protein complement(2073969..2074670) Porphyromonas gingivalis W83 2552121 NP_906060.1 CDS PG1986 NC_002950.2 2074684 2075874 R CRISPR-associated Cmr3 family protein complement(2074684..2075874) Porphyromonas gingivalis W83 2552120 NP_906061.1 CDS PG1987 NC_002950.2 2075876 2077522 R CRISPR-associated Csm1 family protein complement(2075876..2077522) Porphyromonas gingivalis W83 2552119 NP_906062.1 CDS PG1988 NC_002950.2 2077515 2078957 R hypothetical protein complement(2077515..2078957) Porphyromonas gingivalis W83 2552135 NP_906063.1 CDS PG1989 NC_002950.2 2078973 2079191 R hypothetical protein complement(2078973..2079191) Porphyromonas gingivalis W83 2552130 NP_906064.1 CDS gidA NC_002950.2 2081550 2083427 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 2081550..2083427 Porphyromonas gingivalis W83 2553190 NP_906065.1 CDS uvrC NC_002950.2 2083461 2085260 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2083461..2085260 Porphyromonas gingivalis W83 2553185 NP_906066.1 CDS dtd NC_002950.2 2085267 2085719 D hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2085267..2085719 Porphyromonas gingivalis W83 2553176 NP_906067.1 CDS PG1995 NC_002950.2 2085724 2086074 D similar to GB:M67468, GB:S65791, GB:L29074, GB:X69962, SP:Q06787, PID:388726, PID:388728, PID:388734, PID:388736, PID:388738, PID:388740, PID:388742, PID:388744, PID:388752, PID:388754, PID:457239, PID:553289, PID:553290, and PID:553291; identified by sequence similarity; putative; hypothetical protein 2085724..2086074 Porphyromonas gingivalis W83 2553168 NP_906068.1 CDS deoC NC_002950.2 2086061 2086930 D similar to GB:S68409, and PID:545046; identified by sequence similarity; putative; deoxyribose-phosphate aldolase 2086061..2086930 Porphyromonas gingivalis W83 2553165 NP_906069.1 CDS PG1997 NC_002950.2 2086971 2087132 D hypothetical protein 2086971..2087132 Porphyromonas gingivalis W83 2553150 NP_906070.1 CDS PG1998 NC_002950.2 2087241 2088119 R polyprenyl synthetase complement(2087241..2088119) Porphyromonas gingivalis W83 2553147 NP_906071.1 CDS PG1999 NC_002950.2 2088273 2088911 R similar to GB:U01032, and PID:393012; identified by sequence similarity; putative; hypothetical protein complement(2088273..2088911) Porphyromonas gingivalis W83 2553141 NP_906072.1 CDS PG2000 NC_002950.2 2088932 2089558 R similar to GB:X02747, GB:M15656, GB:M15657, GB:K01177, GB:X00270, SP:P05062, PID:178353, PID:178357, PID:2160383, PID:28420, PID:28617, and PID:563884; identified by sequence similarity; putative; signal peptidase-like protein complement(2088932..2089558) Porphyromonas gingivalis W83 2553131 NP_906073.1 CDS lepB NC_002950.2 2089548 2090945 R similar to GB:X02747, GB:M15656, GB:M15657, GB:K01177, GB:X00270, SP:P05062, PID:178353, PID:178357, PID:2160383, PID:28420, PID:28617, and PID:563884; identified by sequence similarity; putative; signal peptidase I complement(2089548..2090945) Porphyromonas gingivalis W83 2552102 NP_906074.1 CDS dapB NC_002950.2 2090961 2091677 R dihydrodipicolinate reductase complement(2090961..2091677) Porphyromonas gingivalis W83 2552101 NP_906075.1 CDS dgt NC_002950.2 2091738 2093081 R similar to GB:X76942, GB:U41740, GB:X76942, PID:1213484, and PID:439656; identified by sequence similarity; putative; deoxyguanosinetriphosphate triphosphohydrolase complement(2091738..2093081) Porphyromonas gingivalis W83 2552100 NP_906076.1 CDS PG2004 NC_002950.2 2093225 2094217 R similar to GB:M19267, GB:M19713, GB:M19714, GB:M19715, SP:P06753, SP:P07951, SP:P09493, SP:P09494, PID:339954, and PID:339956; identified by sequence similarity; putative; hypothetical protein complement(2093225..2094217) Porphyromonas gingivalis W83 2552099 NP_906077.1 CDS PG2006 NC_002950.2 2094727 2095086 D hypothetical protein 2094727..2095086 Porphyromonas gingivalis W83 2552098 NP_906078.1 CDS PG2008 NC_002950.2 2095383 2097884 D TonB-dependent receptor 2095383..2097884 Porphyromonas gingivalis W83 2552097 NP_906079.1 CDS PG2009 NC_002950.2 2098454 2099191 D identified by match to TIGR protein family HMM TIGR00613; DNA repair protein RecO 2098454..2099191 Porphyromonas gingivalis W83 2552096 NP_906080.1 CDS PG2010 NC_002950.2 2099360 2101012 D phosphomannomutase 2099360..2101012 Porphyromonas gingivalis W83 2552095 NP_906081.1 CDS cas2-2 NC_002950.2 2104316 2104579 R similar to SP:Q04733; identified by sequence similarity; putative; CRISPR-associated Cas2 family protein complement(2104316..2104579) Porphyromonas gingivalis W83 2553112 NP_906082.1 CDS cas1 NC_002950.2 2104579 2105595 R similar to SP:P33962, PID:43662, PID:1154786, SP:P33962, PID:43662, and PID:1154786; identified by sequence similarity; putative; CRISPR-associated Cas1 family protein complement(2104579..2105595) Porphyromonas gingivalis W83 2553099 NP_906083.1 CDS cas4 NC_002950.2 2105592 2106104 R similar to GB:M63594, SP:P29236, PID:150688, GB:M63594, SP:P29236, and PID:150688; identified by sequence similarity; putative; CRISPR-associated Cas4 family protein complement(2105592..2106104) Porphyromonas gingivalis W83 2553095 NP_906084.1 CDS cas3 NC_002950.2 2106124 2108460 R identified by match to TIGR protein family HMM TIGR01696; CRISPR-associated helicase Cas3 complement(2106124..2108460) Porphyromonas gingivalis W83 2553085 NP_906085.1 CDS PG2017 NC_002950.2 2108435 2109451 R hypothetical protein complement(2108435..2109451) Porphyromonas gingivalis W83 2553081 NP_906086.1 CDS PG2018 NC_002950.2 2109462 2110961 R hypothetical protein complement(2109462..2110961) Porphyromonas gingivalis W83 2553068 NP_906087.1 CDS PG2019 NC_002950.2 2110958 2111752 R identified by match to PFAM protein family HMM PF03787; hypothetical protein complement(2110958..2111752) Porphyromonas gingivalis W83 2553058 NP_906088.1 CDS PG2020 NC_002950.2 2111698 2112363 R similar to GB:M63264, SP:P26900, PID:142517, PID:1303987, and GB:AL009126; identified by sequence similarity; putative; CRISPR-associated Cas5e family protein complement(2111698..2112363) Porphyromonas gingivalis W83 2553050 NP_906089.1 CDS PG2021 NC_002950.2 2113011 2114942 R hypothetical protein complement(2113011..2114942) Porphyromonas gingivalis W83 2553023 NP_906090.1 CDS PG2022 NC_002950.2 2114946 2117489 R hypothetical protein complement(2114946..2117489) Porphyromonas gingivalis W83 2553016 NP_906091.1 CDS fmt NC_002950.2 2117655 2118626 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(2117655..2118626) Porphyromonas gingivalis W83 2553010 NP_906092.1 CDS hagE NC_002950.2 2119173 2124293 R hemagglutinin protein HagE complement(2119173..2124293) Porphyromonas gingivalis W83 2552074 NP_906093.1 CDS PG2026 NC_002950.2 2125072 2125605 D phosphoglycerate mutase 2125072..2125605 Porphyromonas gingivalis W83 2552073 NP_906094.1 CDS PG2027 NC_002950.2 2125634 2126158 D hypothetical protein 2125634..2126158 Porphyromonas gingivalis W83 2552072 NP_906095.1 CDS PG2028 NC_002950.2 2126167 2126676 D ebsC protein 2126167..2126676 Porphyromonas gingivalis W83 2552071 NP_906096.1 CDS PG2029 NC_002950.2 2126683 2129262 D hypothetical protein 2126683..2129262 Porphyromonas gingivalis W83 2552084 NP_906097.1 CDS PG2030 NC_002950.2 2129887 2130468 D hypothetical protein 2129887..2130468 Porphyromonas gingivalis W83 2552077 NP_906098.1 CDS PG2031 NC_002950.2 2130479 2130931 D identified by match to PFAM protein family HMM PF05146; hypothetical protein 2130479..2130931 Porphyromonas gingivalis W83 2553001 NP_906099.1 CDS priA NC_002950.2 2130958 2133471 R similar to SP:P06519, PID:455334, and PID:1145786; identified by sequence similarity; putative; primosomal protein N' complement(2130958..2133471) Porphyromonas gingivalis W83 2552994 NP_906100.1 CDS gltD NC_002950.2 2133505 2134893 R similar to GB:L19221, and PID:410147; identified by sequence similarity; putative; glutamate synthase small subunit complement(2133505..2134893) Porphyromonas gingivalis W83 2552989 NP_906101.1 CDS PG2034 NC_002950.2 2135000 2135791 R ferredoxin-NADP(+) reductase subunit alpha complement(2135000..2135791) Porphyromonas gingivalis W83 2552981 NP_906102.1 CDS trmD NC_002950.2 2135992 2136669 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2135992..2136669 Porphyromonas gingivalis W83 2552971 NP_906103.1 CDS PG2036 NC_002950.2 2136701 2137612 D ion transporter 2136701..2137612 Porphyromonas gingivalis W83 2552965 NP_906104.1 CDS PG2037 NC_002950.2 2137681 2137902 R hypothetical protein complement(2137681..2137902) Porphyromonas gingivalis W83 2552956 NP_906105.1 CDS PG2038 NC_002950.2 2137899 2138297 R similar to GB:L10970, GB:L10970, PID:425436, GB:L10970, GB:L10970, PID:425436, SP:P28056, and PID:38963; identified by sequence similarity; putative; N-acetylmuramoyl-L-alanine amidase complement(2137899..2138297) Porphyromonas gingivalis W83 2552940 NP_906106.1 CDS PG2040 NC_002950.2 2138488 2138964 R histone-like family DNA-binding protein complement(2138488..2138964) Porphyromonas gingivalis W83 2552931 NP_906107.1 CDS PG2041 NC_002950.2 2139325 2140056 R hypothetical protein complement(2139325..2140056) Porphyromonas gingivalis W83 2552928 NP_906108.1 CDS PG2042 NC_002950.2 2140189 2141199 R thioredoxin family protein complement(2140189..2141199) Porphyromonas gingivalis W83 2552934 NP_906109.1 CDS PG2043 NC_002950.2 2142358 2143452 D hypothetical protein 2142358..2143452 Porphyromonas gingivalis W83 2552043 NP_906110.1 CDS PG2044 NC_002950.2 2143470 2144225 D hypothetical protein 2143470..2144225 Porphyromonas gingivalis W83 2552042 NP_906111.1 CDS PG2046 NC_002950.2 2144489 2145853 D hypothetical protein 2144489..2145853 Porphyromonas gingivalis W83 2552041 NP_906112.1 CDS PG2047 NC_002950.2 2145848 2148133 R helicase complement(2145848..2148133) Porphyromonas gingivalis W83 2552039 NP_906113.1 CDS PG2048 NC_002950.2 2148224 2148604 R hypothetical protein complement(2148224..2148604) Porphyromonas gingivalis W83 2552038 NP_906114.1 CDS PG2049 NC_002950.2 2148617 2148994 R hypothetical protein complement(2148617..2148994) Porphyromonas gingivalis W83 2552037 NP_906115.1 CDS PG2050 NC_002950.2 2149249 2149524 R hypothetical protein complement(2149249..2149524) Porphyromonas gingivalis W83 2552036 NP_906116.1 CDS dapA NC_002950.2 2149776 2150645 D dihydrodipicolinate synthase 2149776..2150645 Porphyromonas gingivalis W83 2552035 NP_906117.1 CDS bioD NC_002950.2 2150674 2151327 D DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 2150674..2151327 Porphyromonas gingivalis W83 2552034 NP_906118.1 CDS PG2054 NC_002950.2 2151433 2152104 R lipoprotein PG3 complement(2151433..2152104) Porphyromonas gingivalis W83 2552033 NP_906119.1 CDS PG2055 NC_002950.2 2152170 2153150 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2152170..2153150) Porphyromonas gingivalis W83 2552032 NP_906120.1 CDS PG2057 NC_002950.2 2155099 2156037 R ISPg5, transposase Orf2 complement(2155099..2156037) Porphyromonas gingivalis W83 2552056 NP_906121.1 CDS PG2058 NC_002950.2 2156091 2156480 R ISPg5, transposase Orf1 complement(2156091..2156480) Porphyromonas gingivalis W83 2552054 NP_906122.1 CDS thyA NC_002950.2 2157713 2158516 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 2157713..2158516 Porphyromonas gingivalis W83 2552923 NP_906123.1 CDS folA NC_002950.2 2158562 2159050 D similar to GB:X63753, GB:S47238, GB:S47239, GB:S47240, GB:S79056, SP:P18583, PID:338290, and PID:36546; identified by sequence similarity; putative; dihydrofolate reductase 2158562..2159050 Porphyromonas gingivalis W83 2552908 NP_906124.1 CDS hisS NC_002950.2 2159111 2160475 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2159111..2160475 Porphyromonas gingivalis W83 2552902 NP_906125.1 CDS PG2063 NC_002950.2 2160480 2160686 R hypothetical protein complement(2160480..2160686) Porphyromonas gingivalis W83 2552893 NP_906126.1 CDS PG2064 NC_002950.2 2160690 2161094 D hypothetical protein 2160690..2161094 Porphyromonas gingivalis W83 2552886 NP_906127.1 CDS PG2065 NC_002950.2 2161140 2162165 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2161140..2162165 Porphyromonas gingivalis W83 2552858 NP_906128.1 CDS PG2066 NC_002950.2 2162256 2163311 D putative lipoprotein 2162256..2163311 Porphyromonas gingivalis W83 2552836 NP_906129.1 CDS pdxA NC_002950.2 2163355 2164452 D pyridoxal phosphate biosynthetic protein PdxA 2163355..2164452 Porphyromonas gingivalis W83 2552828 NP_906130.1 CDS tagD NC_002950.2 2164474 2164932 D similar to GB:X13543, and GB:X13541; identified by sequence similarity; putative; glycerol-3-phosphate cytidylyltransferase 2164474..2164932 Porphyromonas gingivalis W83 2552800 NP_906131.1 CDS PG2069 NC_002950.2 2164938 2165669 D short chain dehydrogenase/reductase oxidoreductase 2164938..2165669 Porphyromonas gingivalis W83 2552798 NP_906132.1 CDS PG2070 NC_002950.2 2165681 2166607 D hypothetical protein 2165681..2166607 Porphyromonas gingivalis W83 2552788 NP_906133.1 CDS PG2071 NC_002950.2 2166577 2167512 D hypothetical protein 2166577..2167512 Porphyromonas gingivalis W83 2552778 NP_906134.1 CDS PG2072 NC_002950.2 2167509 2170817 D UvrD/REP helicase 2167509..2170817 Porphyromonas gingivalis W83 2552024 NP_906135.1 CDS PG2073 NC_002950.2 2174309 2174464 R hypothetical protein complement(2174309..2174464) Porphyromonas gingivalis W83 2551503 NP_906136.1 CDS PG2074 NC_002950.2 2174593 2174751 R hypothetical protein complement(2174593..2174751) Porphyromonas gingivalis W83 2551519 NP_906137.1 CDS PG2075 NC_002950.2 2176338 2176556 R hypothetical protein complement(2176338..2176556) Porphyromonas gingivalis W83 2552706 NP_906138.1 CDS PG2076 NC_002950.2 2176585 2177133 D hypothetical protein 2176585..2177133 Porphyromonas gingivalis W83 2552709 NP_906139.1 CDS PG2077 NC_002950.2 2177095 2177481 R hypothetical protein complement(2177095..2177481) Porphyromonas gingivalis W83 2552670 NP_906140.1 CDS PG2078 NC_002950.2 2177518 2178690 R similar to GB:J01614, SP:P03024, GB:V00280, PID:146068, PID:41534, PID:882730, GB:U00096, and PID:1789202; identified by sequence similarity; putative; hypothetical protein complement(2177518..2178690) Porphyromonas gingivalis W83 2552696 NP_906141.1 CDS PG2079 NC_002950.2 2178980 2179456 R hypothetical protein complement(2178980..2179456) Porphyromonas gingivalis W83 2552716 NP_906142.1 CDS bioA NC_002950.2 2179468 2180769 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(2179468..2180769) Porphyromonas gingivalis W83 2552682 NP_906143.1 CDS bioB NC_002950.2 2180759 2181751 R biotin synthetase complement(2180759..2181751) Porphyromonas gingivalis W83 2552727 NP_906144.1 CDS PG2082 NC_002950.2 2181933 2183474 R POT family protein complement(2181933..2183474) Porphyromonas gingivalis W83 2552724 NP_906145.1 CDS PG2083 NC_002950.2 2183500 2184597 R hypothetical protein complement(2183500..2184597) Porphyromonas gingivalis W83 2552651 NP_906146.1 CDS trpS NC_002950.2 2185672 2186655 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2185672..2186655 Porphyromonas gingivalis W83 2552692 NP_906147.1 CDS PG2086 NC_002950.2 2186711 2187130 D hypothetical protein 2186711..2187130 Porphyromonas gingivalis W83 2551526 NP_906148.1 CDS PG2087 NC_002950.2 2187130 2187603 D SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2187130..2187603 Porphyromonas gingivalis W83 2551496 NP_906149.1 CDS msrA NC_002950.2 2187665 2188723 D this fusion consists of methionine sulfoxide A reductase at the N-terminus and B at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion; bifunctional methionine sulfoxide reductase A/B 2187665..2188723 Porphyromonas gingivalis W83 2551523 NP_906150.1 CDS PG2089 NC_002950.2 2188780 2189964 D hypothetical protein 2188780..2189964 Porphyromonas gingivalis W83 2552633 NP_906151.1 CDS PG2090 NC_002950.2 2190370 2191278 D similar to SP:P38100, and PID:1750387; identified by sequence similarity; putative; cation efflux family protein 2190370..2191278 Porphyromonas gingivalis W83 2552641 NP_906152.1 CDS folB NC_002950.2 2191317 2191670 D identified by match to TIGR protein family HMM TIGR00526; dihydroneopterin aldolase 2191317..2191670 Porphyromonas gingivalis W83 2552635 NP_906153.1 CDS PG2092 NC_002950.2 2191741 2193000 R hypothetical protein complement(2191741..2193000) Porphyromonas gingivalis W83 2552646 NP_906154.1 CDS PG2094 NC_002950.2 2193411 2197958 R hypothetical protein complement(2193411..2197958) Porphyromonas gingivalis W83 2552625 NP_906155.1 CDS PG2095 NC_002950.2 2198380 2200707 R putative lipoprotein complement(2198380..2200707) Porphyromonas gingivalis W83 2552617 NP_906156.1 CDS PG2096 NC_002950.2 2200715 2205505 R hypothetical protein complement(2200715..2205505) Porphyromonas gingivalis W83 2551497 NP_906157.1 CDS prsA NC_002950.2 2205611 2206552 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(2205611..2206552) Porphyromonas gingivalis W83 2552615 NP_906158.1 CDS PG2098 NC_002950.2 2206549 2206725 R hypothetical protein complement(2206549..2206725) Porphyromonas gingivalis W83 2552616 NP_906159.1 CDS PG2099 NC_002950.2 2206739 2208022 R DEAD/DEAH box helicase complement(2206739..2208022) Porphyromonas gingivalis W83 2552601 NP_906160.1 CDS PG2100 NC_002950.2 2208617 2210281 R hypothetical protein complement(2208617..2210281) Porphyromonas gingivalis W83 2552583 NP_906161.1 CDS PG2101 NC_002950.2 2210368 2211363 R hypothetical protein complement(2210368..2211363) Porphyromonas gingivalis W83 2552558 NP_906162.1 CDS PG2102 NC_002950.2 2211514 2213136 R hypothetical protein complement(2211514..2213136) Porphyromonas gingivalis W83 2552545 NP_906163.1 CDS PG2103 NC_002950.2 2213316 2213450 R hypothetical protein complement(2213316..2213450) Porphyromonas gingivalis W83 2552540 NP_906164.1 CDS PG2104 NC_002950.2 2213575 2213709 R hypothetical protein complement(2213575..2213709) Porphyromonas gingivalis W83 2551493 NP_906165.1 CDS PG2105 NC_002950.2 2214139 2214639 D putative lipoprotein 2214139..2214639 Porphyromonas gingivalis W83 2552502 NP_906166.1 CDS PG2106 NC_002950.2 2214834 2215517 D hypothetical protein 2214834..2215517 Porphyromonas gingivalis W83 2552495 NP_906167.1 CDS thiH NC_002950.2 2215636 2216748 R in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and iscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; thiamine biosynthesis protein ThiH complement(2215636..2216748) Porphyromonas gingivalis W83 2551801 NP_906168.1 CDS thiG NC_002950.2 2216761 2217540 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2216761..2217540) Porphyromonas gingivalis W83 2552496 NP_906169.1 CDS thiE NC_002950.2 2217599 2219542 R thiamine-phosphate pyrophosphorylase complement(2217599..2219542) Porphyromonas gingivalis W83 2551490 NP_906170.1 CDS thiC NC_002950.2 2219539 2221302 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2219539..2221302) Porphyromonas gingivalis W83 2551489 NP_906171.1 CDS thiS NC_002950.2 2221372 2221572 R similar to GB:Z36940, PID:535808, GB:Z36940, and PID:535808; identified by sequence similarity; putative; sulfur carrier protein ThiS complement(2221372..2221572) Porphyromonas gingivalis W83 2552473 NP_906172.1 CDS PG2112 NC_002950.2 2221611 2222723 D hypothetical protein 2221611..2222723 Porphyromonas gingivalis W83 2552445 NP_906173.1 CDS PG2114 NC_002950.2 2224072 2224248 R hypothetical protein complement(2224072..2224248) Porphyromonas gingivalis W83 2552467 NP_906174.1 CDS PG2116 NC_002950.2 2224775 2224927 D hypothetical protein 2224775..2224927 Porphyromonas gingivalis W83 2552477 NP_906175.1 CDS rpsP NC_002950.2 2225325 2225903 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2225325..2225903) Porphyromonas gingivalis W83 2552452 NP_906176.1 CDS PG2119 NC_002950.2 2226687 2227658 D identified by match to PFAM protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 2226687..2227658 Porphyromonas gingivalis W83 2552412 NP_906177.1 CDS PG2120 NC_002950.2 2227773 2228582 R identified by match to PFAM protein family HMM PF00753; metallo-beta-lactamase superfamily protein complement(2227773..2228582) Porphyromonas gingivalis W83 2552439 NP_906178.1 CDS ansA NC_002950.2 2228635 2229714 R L-asparaginase complement(2228635..2229714) Porphyromonas gingivalis W83 2552408 NP_906179.1 CDS PG2123 NC_002950.2 2230031 2230303 D hypothetical protein 2230031..2230303 Porphyromonas gingivalis W83 2552458 NP_906180.1 CDS gapA NC_002950.2 2230314 2231324 D glyceraldehyde 3-phosphate dehydrogenase, type I 2230314..2231324 Porphyromonas gingivalis W83 2552418 NP_906181.1 CDS PG2125 NC_002950.2 2231466 2232344 R AraC family transcriptional regulator complement(2231466..2232344) Porphyromonas gingivalis W83 2552434 NP_906182.1 CDS PG2126 NC_002950.2 2232528 2233202 R similar to GB:D13816, SP:Q08637, PID:391682, PID:487279, GB:D13816, SP:Q08637, PID:391682, and PID:487279; identified by sequence similarity; putative; hypothetical protein complement(2232528..2233202) Porphyromonas gingivalis W83 2552416 NP_906183.1 CDS PG2127 NC_002950.2 2233199 2233642 R hypothetical protein complement(2233199..2233642) Porphyromonas gingivalis W83 2551437 NP_906184.1 CDS PG2128 NC_002950.2 2233957 2234895 R identified by match to PFAM protein family HMM PF00665; ISPg5, transposase Orf2 complement(2233957..2234895) Porphyromonas gingivalis W83 2551439 NP_906185.1 CDS PG2129 NC_002950.2 2234949 2235338 R ISPg5, transposase Orf1 complement(2234949..2235338) Porphyromonas gingivalis W83 2551400 NP_906186.1 CDS PG2130 NC_002950.2 2235707 2236288 D hypothetical protein 2235707..2236288 Porphyromonas gingivalis W83 2551500 NP_906187.1 CDS PG2131 NC_002950.2 2236314 2237786 D hypothetical protein 2236314..2237786 Porphyromonas gingivalis W83 2551376 NP_906188.1 CDS fimA NC_002950.2 2237837 2239003 D similar to GB:M15518, GB:D01096, GB:A01465, GB:A04051, GB:A07197, GB:V00570, GB:K03021, GB:L00153, GB:L00141, GB:L00142, GB:L00143, GB:L00144, GB:L00145, GB:L00146, GB:L00147, GB:L00148, GB:L00149, GB:L00150, GB:L00151, GB:L00152, GB:S77144, SP:P00750, PID:190032, PID:2285954, PID:339818, PID:339834, PID:339839, PID:340177, PID:345129, PID:37244, PID:412165, PID:441174, and PID:575655; identified by sequence similarity; putative; fimbrilin 2237837..2239003 Porphyromonas gingivalis W83 2551422 NP_906189.1 CDS PG2133 NC_002950.2 2239142 2240053 D putative lipoprotein 2239142..2240053 Porphyromonas gingivalis W83 2551391 NP_906190.1 CDS PG2134 NC_002950.2 2240067 2241440 D similar to GB:M64978, and PID:150553; identified by sequence similarity; putative; putative lipoprotein 2240067..2241440 Porphyromonas gingivalis W83 2551367 NP_906191.1 CDS PG2135 NC_002950.2 2241461 2243473 D similar to GB:X75411, SP:P39466, and PID:415999; identified by sequence similarity; putative; putative lipoprotein 2241461..2243473 Porphyromonas gingivalis W83 2551524 NP_906192.1 CDS PG2136 NC_002950.2 2243500 2245164 D hypothetical protein 2243500..2245164 Porphyromonas gingivalis W83 2551405 NP_906193.1 CDS PG2139 NC_002950.2 2245788 2246267 D hypothetical protein 2245788..2246267 Porphyromonas gingivalis W83 2551428 NP_906194.1 CDS rpmF NC_002950.2 2246274 2246459 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2246274..2246459 Porphyromonas gingivalis W83 2551444 NP_906195.1 CDS fabH NC_002950.2 2246639 2247646 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2246639..2247646 Porphyromonas gingivalis W83 2551458 NP_906196.1 CDS era NC_002950.2 2247725 2248624 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2247725..2248624 Porphyromonas gingivalis W83 2552378 NP_906197.1 CDS engA NC_002950.2 2248687 2250000 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2248687..2250000 Porphyromonas gingivalis W83 2552372 NP_906198.1 CDS PG2144 NC_002950.2 2250051 2253350 D hypothetical protein 2250051..2253350 Porphyromonas gingivalis W83 2552369 NP_906199.1 CDS PG2145 NC_002950.2 2253393 2253998 D identified by match to PFAM protein family HMM PF01522; polysaccharide deacetylase 2253393..2253998 Porphyromonas gingivalis W83 2552367 NP_906200.1 CDS PG2146 NC_002950.2 2253955 2254710 D similar to GB:D10668, SP:P29537, PID:216714, GB:D10668, SP:P29537, and PID:216714; identified by sequence similarity; putative; hypothetical protein 2253955..2254710 Porphyromonas gingivalis W83 2552330 NP_906201.1 CDS xpt NC_002950.2 2254909 2255490 R Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase complement(2254909..2255490) Porphyromonas gingivalis W83 2552382 NP_906202.1 CDS PG2148 NC_002950.2 2255527 2256864 R xanthine/uracil permease complement(2255527..2256864) Porphyromonas gingivalis W83 2552380 NP_906203.1 CDS PG2149 NC_002950.2 2257026 2257748 R hypothetical protein complement(2257026..2257748) Porphyromonas gingivalis W83 2552340 NP_906204.1 CDS PG2150 NC_002950.2 2257757 2259262 R LysM domain-containing protein complement(2257757..2259262) Porphyromonas gingivalis W83 2552334 NP_906205.1 CDS PG2152 NC_002950.2 2259890 2260375 D histone-like family DNA-binding protein 2259890..2260375 Porphyromonas gingivalis W83 2552357 NP_906206.1 CDS PG2154 NC_002950.2 2260850 2261035 R hypothetical protein complement(2260850..2261035) Porphyromonas gingivalis W83 2552388 NP_906207.1 CDS PG2155 NC_002950.2 2261062 2261952 R putative lipoprotein complement(2261062..2261952) Porphyromonas gingivalis W83 2551466 NP_906208.1 CDS PG2156 NC_002950.2 2261989 2262735 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(2261989..2262735) Porphyromonas gingivalis W83 2551467 NP_906209.1 CDS PG2157 NC_002950.2 2263083 2264084 D similar to GB:M61877, GB:M11049, GB:M61775, GB:M13233, SP:P02549, PID:182243, PID:338438, PID:460309, and PID:553648; identified by sequence similarity; putative; glutamine cyclotransferase-like protein 2263083..2264084 Porphyromonas gingivalis W83 2551468 NP_906210.1 CDS PG2158 NC_002950.2 2264108 2264533 D identified by match to PFAM protein family HMM PF02657; hypothetical protein 2264108..2264533 Porphyromonas gingivalis W83 2551470 NP_906211.1 CDS PG2159 NC_002950.2 2264537 2265934 D protoporphyrinogen oxidase 2264537..2265934 Porphyromonas gingivalis W83 2551471 NP_906212.1 CDS PG2161 NC_002950.2 2266807 2267706 R AraC family transcriptional regulator complement(2266807..2267706) Porphyromonas gingivalis W83 2551472 NP_906213.1 CDS lpxB NC_002950.2 2267703 2268854 R lipid A disaccharide synthase complement(2267703..2268854) Porphyromonas gingivalis W83 2551474 NP_906214.1 CDS surE NC_002950.2 2268891 2269661 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2268891..2269661) Porphyromonas gingivalis W83 2551435 NP_906215.1 CDS PG2164 NC_002950.2 2269658 2270215 R FKBP-type peptidylprolyl isomerase complement(2269658..2270215) Porphyromonas gingivalis W83 2551431 NP_906216.1 CDS glyS NC_002950.2 2270212 2271759 R Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase complement(2270212..2271759) Porphyromonas gingivalis W83 2551429 NP_906217.1 CDS PG2166 NC_002950.2 2271949 2272059 D hypothetical protein 2271949..2272059 Porphyromonas gingivalis W83 2551384 NP_906218.1 CDS PG2167 NC_002950.2 2272194 2273633 R hypothetical protein complement(2272194..2273633) Porphyromonas gingivalis W83 2551388 NP_906219.1 CDS PG2168 NC_002950.2 2273678 2274247 R hypothetical protein complement(2273678..2274247) Porphyromonas gingivalis W83 2551375 NP_906220.1 CDS PG2170 NC_002950.2 2276775 2278064 R similar to GB:S68805, SP:P50440, and PID:791049; identified by sequence similarity; putative; sugar transporter complement(2276775..2278064) Porphyromonas gingivalis W83 2551379 NP_906221.1 CDS PG2171 NC_002950.2 2278103 2279062 R D-isomer specific 2-hydroxyacid dehydrogenase complement(2278103..2279062) Porphyromonas gingivalis W83 2552323 NP_906222.1 CDS PG2172 NC_002950.2 2279281 2280027 R hypothetical protein complement(2279281..2280027) Porphyromonas gingivalis W83 2552266 NP_906223.1 CDS omp28 NC_002950.2 2280031 2280903 R outer membrane lipoprotein Omp28 complement(2280031..2280903) Porphyromonas gingivalis W83 2552232 NP_906224.1 CDS PG2174 NC_002950.2 2280923 2282668 R hypothetical protein complement(2280923..2282668) Porphyromonas gingivalis W83 2552239 NP_906225.1 CDS PG2175 NC_002950.2 2282724 2283206 R hypothetical protein complement(2282724..2283206) Porphyromonas gingivalis W83 2552282 NP_906226.1 CDS PG2176 NC_002950.2 2283305 2284435 R similar to GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, PID:1789653, GB:M32214, SP:P02905, GB:M83198, GB:X14825, PID:145174, PID:145890, PID:145892, PID:41362, PID:606195, GB:U00096, and PID:1789653; identified by sequence similarity; putative; ISPg2, transposase complement(2283305..2284435) Porphyromonas gingivalis W83 2552306 NP_906227.1 CDS nqrF NC_002950.2 2285356 2286594 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(2285356..2286594) Porphyromonas gingivalis W83 2552262 NP_906228.1 CDS nqrE NC_002950.2 2286613 2287227 R Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E complement(2286613..2287227) Porphyromonas gingivalis W83 2552251 NP_906229.1 CDS nqrD NC_002950.2 2287267 2287896 R Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D complement(2287267..2287896) Porphyromonas gingivalis W83 2552245 NP_906230.1 CDS nqrC NC_002950.2 2287902 2288636 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C complement(2287902..2288636) Porphyromonas gingivalis W83 2551394 NP_906231.1 CDS nqrB NC_002950.2 2288660 2289859 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(2288660..2289859) Porphyromonas gingivalis W83 2551378 NP_906232.1 CDS nqrA NC_002950.2 2289890 2291245 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(2289890..2291245) Porphyromonas gingivalis W83 2551385 NP_906233.1 CDS PG2185 NC_002950.2 2292023 2293339 R similar to GB:D13633, and PID:286013; identified by sequence similarity; putative; transporter complement(2292023..2293339) Porphyromonas gingivalis W83 2551390 NP_906234.1 CDS PG2186 NC_002950.2 2293374 2293709 R identified by match to PFAM protein family HMM PF03965; transcriptional regulator complement(2293374..2293709) Porphyromonas gingivalis W83 2551414 NP_906235.1 CDS menA NC_002950.2 2293846 2294733 R similar to GB:M57417, and PID:188878; identified by sequence similarity; putative; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(2293846..2294733) Porphyromonas gingivalis W83 2552023 NP_906236.1 CDS lysA NC_002950.2 2294723 2295871 R similar to GB:X14448, GB:L35265, GB:M13571, GB:X16889, SP:P06280, PID:1684916, PID:178246, PID:31756, PID:553299, and PID:757912; identified by sequence similarity; putative; diaminopimelate decarboxylase complement(2294723..2295871) Porphyromonas gingivalis W83 2551374 NP_906237.1 CDS lysC NC_002950.2 2295901 2297241 R similar to GB:L13923, GB:X63556, GB:L19896, SP:P35555, PID:1335064, and PID:306746; identified by sequence similarity; putative; aspartate kinase complement(2295901..2297241) Porphyromonas gingivalis W83 2551423 NP_906238.1 CDS ftsE NC_002950.2 2297259 2297999 R cell-division ATP-binding protein complement(2297259..2297999) Porphyromonas gingivalis W83 2552017 NP_906239.1 CDS PG2192 NC_002950.2 2298381 2299394 D M24/M37 family peptidase 2298381..2299394 Porphyromonas gingivalis W83 2551408 NP_906240.1 CDS PG2194 NC_002950.2 2301052 2302209 R ISPg4, transposase complement(2301052..2302209) Porphyromonas gingivalis W83 2551959 NP_906241.1 CDS PG2197 NC_002950.2 2302745 2303542 D hypothetical protein 2302745..2303542 Porphyromonas gingivalis W83 2551889 NP_906242.1 CDS PG2199 NC_002950.2 2304876 2306813 R similar to GB:M33782, SP:P19484, PID:553790, and SP:P05974; identified by sequence similarity; putative; ABC transporter ATP-binding protein complement(2304876..2306813) Porphyromonas gingivalis W83 2551857 NP_906243.1 CDS PG2200 NC_002950.2 2306810 2308897 R similar to SP:P27029, GB:X57299, and PID:47906; identified by sequence similarity; putative; hypothetical protein complement(2306810..2308897) Porphyromonas gingivalis W83 2551859 NP_906244.1 CDS def NC_002950.2 2308933 2309502 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2308933..2309502) Porphyromonas gingivalis W83 2551853 NP_906245.1 CDS PG2202 NC_002950.2 2309607 2310023 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(2309607..2310023) Porphyromonas gingivalis W83 2551852 NP_906246.1 CDS PG2204 NC_002950.2 2310521 2316247 D hypothetical protein 2310521..2316247 Porphyromonas gingivalis W83 2551841 NP_906247.1 CDS panE NC_002950.2 2316261 2317205 D 2-dehydropantoate 2-reductase 2316261..2317205 Porphyromonas gingivalis W83 2551861 NP_906248.1 CDS PG2206 NC_002950.2 2317340 2318956 R similar to SP:P33159, GB:X68014, and PID:40807; identified by sequence similarity; putative; ABC transporter ATP-binding protein complement(2317340..2318956) Porphyromonas gingivalis W83 2551810 NP_906249.1 CDS PG2207 NC_002950.2 2319232 2320251 R hypothetical protein complement(2319232..2320251) Porphyromonas gingivalis W83 2551806 NP_906250.1 CDS PG2208 NC_002950.2 2320422 2320676 R hypothetical protein complement(2320422..2320676) Porphyromonas gingivalis W83 2551843 NP_906251.1 CDS PG2209 NC_002950.2 2320764 2321018 R similar to GB:M31917, SP:P26879, PID:149688, GB:M31917, SP:P26879, and PID:149688; identified by sequence similarity; putative; hypothetical protein complement(2320764..2321018) Porphyromonas gingivalis W83 2551773 NP_906252.1 CDS uvrA-2 NC_002950.2 2321042 2323900 R similar to GB:X52520, GB:X52509, SP:P17735, PID:1217965, PID:36713, and PID:37502; identified by sequence similarity; putative; excinuclease ABC subunit A complement(2321042..2323900) Porphyromonas gingivalis W83 2551770 NP_906253.1 CDS PG2212 NC_002950.2 2324573 2324857 R hypothetical protein complement(2324573..2324857) Porphyromonas gingivalis W83 2551685 NP_906254.1 CDS PG2213 NC_002950.2 2324938 2325120 R similar to GB:M19480, GB:M19481, SP:P19883, and PID:182721; identified by sequence similarity; putative; nitrite reductase-like protein complement(2324938..2325120) Porphyromonas gingivalis W83 2551679 NP_906255.1 CDS PG2214 NC_002950.2 2325391 2326665 R hypothetical protein complement(2325391..2326665) Porphyromonas gingivalis W83 2551726 NP_906256.1 CDS manC NC_002950.2 2326700 2327785 R similar to GB:D26185, SP:P37464, PID:467403, and GB:AL009126; identified by sequence similarity; putative; mannose-1-phosphate guanylyltransferase complement(2326700..2327785) Porphyromonas gingivalis W83 2551659 NP_906257.1 CDS PG2216 NC_002950.2 2327860 2329590 D hypothetical protein 2327860..2329590 Porphyromonas gingivalis W83 2551647 NP_906258.1 CDS dxs NC_002950.2 2329763 2331667 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2329763..2331667 Porphyromonas gingivalis W83 2551684 NP_906259.1 CDS trkA NC_002950.2 2331720 2333060 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 2331720..2333060 Porphyromonas gingivalis W83 2551621 NP_906260.1 CDS trkH NC_002950.2 2333087 2334550 D potassium uptake protein TrkH 2333087..2334550 Porphyromonas gingivalis W83 2551676 NP_906261.1 CDS PG2220 NC_002950.2 2335075 2335428 D hypothetical protein 2335075..2335428 Porphyromonas gingivalis W83 2551643 NP_906262.1 CDS PG2221 NC_002950.2 2335566 2336900 D MiaB-like tRNA modifying enzyme 2335566..2336900 Porphyromonas gingivalis W83 2551590 NP_906263.1 CDS PG2222 NC_002950.2 2336897 2337814 D acyltransferase 2336897..2337814 Porphyromonas gingivalis W83 2551562 NP_906264.1 CDS PG2223 NC_002950.2 2337853 2338821 D similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; glycosyl transferase group 2 family protein 2337853..2338821 Porphyromonas gingivalis W83 2551610 NP_906265.1 CDS PG2224 NC_002950.2 2339003 2339560 D similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; hypothetical protein 2339003..2339560 Porphyromonas gingivalis W83 2551577 NP_906266.1 CDS PG2225 NC_002950.2 2339580 2339849 D similar to GB:L23283, SP:P01764, SP:P01767, PID:483870, PID:495944, PID:495993, PID:496012, PID:496014, PID:505431, PID:507337, PID:509800, PID:511000, PID:520409, PID:520410, PID:547525, PID:547528, PID:547545, PID:553379, PID:553406, PID:553408, PID:553412, PID:553422, PID:553434, PID:553435, PID:553436, PID:553437, PID:553438, PID:553439, PID:553443, PID:553445, PID:553446, PID:553453, PID:553455, PID:553472, PID:563648, PID:567114, PID:567121, PID:567123, PID:567127, PID:567169, PID:567173, PID:567177, PID:587261, PID:587265, PID:587269, PID:587271, PID:587275, PID:587294, PID:587296, PID:587302, PID:587305, PID:587307, PID:587318, PID:619425, PID:619625, PID:619627, PID:619629, PID:619630, PID:619779, PID:642584, PID:773612, PID:773618, PID:773638, PID:790801, PID:790805, PID:790809, PID:806834, PID:860973, PID:860977, PID:896272, PID:896273, PID:901824, PID:901825, PID:903667, PID:903675, PID:905375, PID:905377, PID:939890, PID:939891, PID:939894, PID:940526, PID:945217, PID:976299, PID:976304, PID:976; hypothetical protein 2339580..2339849 Porphyromonas gingivalis W83 2551586 NP_906267.1 CDS PG2226 NC_002950.2 2339929 2342151 D similar to GB:M23245, SP:P07773, and PID:141753; identified by sequence similarity; putative; hypothetical protein 2339929..2342151 Porphyromonas gingivalis W83 2551552 NP_906268.1 CDS PG2227 NC_002950.2 2342148 2342804 D hypothetical protein 2342148..2342804 Porphyromonas gingivalis W83 2551557 PGt01 tRNA tRNA-Asn-1 NC_002950.2 6601 6677 R tRNA-Asn complement(6601..6677) Porphyromonas gingivalis W83 2552662 PGt02 tRNA tRNA-Asn-2 NC_002950.2 6700 6773 R tRNA-Asn complement(6700..6773) Porphyromonas gingivalis W83 2551830 PGt03 tRNA tRNA-Gln-1 NC_002950.2 35651 35724 D tRNA-Gln 35651..35724 Porphyromonas gingivalis W83 2551829 PGt04 tRNA tRNA-Ile-1 NC_002950.2 121595 121668 D tRNA-Ile 121595..121668 Porphyromonas gingivalis W83 2551868 PGt05 tRNA tRNA-Ala-1 NC_002950.2 121670 121746 D tRNA-Ala 121670..121746 Porphyromonas gingivalis W83 2551850 PGt06 tRNA tRNA-Tyr-1 NC_002950.2 420529 420614 D tRNA-Tyr 420529..420614 Porphyromonas gingivalis W83 2551609 PGt07 tRNA tRNA-Thr-1 NC_002950.2 420644 420715 D tRNA-Thr 420644..420715 Porphyromonas gingivalis W83 2551587 PGt08 tRNA tRNA-Trp-1 NC_002950.2 422041 422116 D tRNA-Trp 422041..422116 Porphyromonas gingivalis W83 2551595 PGt09 tRNA tRNA-Ser-1 NC_002950.2 563237 563323 R tRNA-Ser complement(563237..563323) Porphyromonas gingivalis W83 2551418 PGt10 tRNA tRNA-Tyr-2 NC_002950.2 582556 582638 D tRNA-Tyr 582556..582638 Porphyromonas gingivalis W83 2552350 PGt11 tRNA tRNA-Gly-1 NC_002950.2 582672 582744 D tRNA-Gly 582672..582744 Porphyromonas gingivalis W83 2552396 PGt12 tRNA tRNA-Leu-1 NC_002950.2 582761 582845 D tRNA-Leu 582761..582845 Porphyromonas gingivalis W83 2552399 PGt13 tRNA tRNA-Gly-2 NC_002950.2 582894 582969 D tRNA-Gly 582894..582969 Porphyromonas gingivalis W83 2552403 PGt14 tRNA tRNA-Leu-2 NC_002950.2 703739 703822 R tRNA-Leu complement(703739..703822) Porphyromonas gingivalis W83 2552559 PGt15 tRNA tRNA-Arg-1 NC_002950.2 795899 795975 R tRNA-Arg complement(795899..795975) Porphyromonas gingivalis W83 2551514 PGt16 tRNA tRNA-Pro-1 NC_002950.2 827300 827377 D tRNA-Pro 827300..827377 Porphyromonas gingivalis W83 2552762 PGt17 tRNA tRNA-Ser-2 NC_002950.2 834688 834775 R tRNA-Ser complement(834688..834775) Porphyromonas gingivalis W83 2552779 PGt18 tRNA tRNA-Gly-3 NC_002950.2 854671 854743 R tRNA-Gly complement(854671..854743) Porphyromonas gingivalis W83 2552804 PGt19 tRNA tRNA-Ser-3 NC_002950.2 905564 905651 R tRNA-Ser complement(905564..905651) Porphyromonas gingivalis W83 2552863 PGt20 tRNA tRNA-Met-1 NC_002950.2 957036 957112 D tRNA-Met 957036..957112 Porphyromonas gingivalis W83 2552044 PGt21 tRNA tRNA-Ala-2 NC_002950.2 977660 977736 R tRNA-Ala complement(977660..977736) Porphyromonas gingivalis W83 2552069 PGt22 tRNA tRNA-Leu-3 NC_002950.2 1028024 1028108 D tRNA-Leu 1028024..1028108 Porphyromonas gingivalis W83 2552999 PGt23 tRNA tRNA-Phe-1 NC_002950.2 1043983 1044058 D tRNA-Phe 1043983..1044058 Porphyromonas gingivalis W83 2552091 PGt24 tRNA tRNA-Thr-2 NC_002950.2 1115027 1115103 D tRNA-Thr 1115027..1115103 Porphyromonas gingivalis W83 2553096 PGt25 tRNA tRNA-Arg-2 NC_002950.2 1167157 1167230 R tRNA-Arg complement(1167157..1167230) Porphyromonas gingivalis W83 2553348 PGt26 tRNA tRNA-Arg-3 NC_002950.2 1167266 1167339 R tRNA-Arg complement(1167266..1167339) Porphyromonas gingivalis W83 2553345 PGt27 tRNA tRNA-Thr-3 NC_002950.2 1214224 1214296 D tRNA-Thr 1214224..1214296 Porphyromonas gingivalis W83 2553199 PGt28 tRNA tRNA-Gln-2 NC_002950.2 1315403 1315476 R tRNA-Gln complement(1315403..1315476) Porphyromonas gingivalis W83 2553298 PGt29 tRNA tRNA-Pro-2 NC_002950.2 1325681 1325755 D tRNA-Pro 1325681..1325755 Porphyromonas gingivalis W83 2553184 PGt30 tRNA tRNA-Ala-3 NC_002950.2 1344669 1344745 R tRNA-Ala complement(1344669..1344745) Porphyromonas gingivalis W83 2553155 PGt31 tRNA tRNA-Ile-2 NC_002950.2 1344747 1344820 R tRNA-Ile complement(1344747..1344820) Porphyromonas gingivalis W83 2553128 PGt32 tRNA tRNA-Arg-4 NC_002950.2 1394153 1394227 D tRNA-Arg 1394153..1394227 Porphyromonas gingivalis W83 2551992 PGt33 tRNA tRNA-Asp-1 NC_002950.2 1520059 1520135 D tRNA-Asp 1520059..1520135 Porphyromonas gingivalis W83 2553361 PGt34 tRNA tRNA-Arg-5 NC_002950.2 1624760 1624836 D tRNA-Arg 1624760..1624836 Porphyromonas gingivalis W83 2553011 PGt35 tRNA tRNA-His-1 NC_002950.2 1669233 1669307 D tRNA-His 1669233..1669307 Porphyromonas gingivalis W83 2552919 PGt36 tRNA tRNA-Ala-4 NC_002950.2 1755340 1755416 R tRNA-Ala complement(1755340..1755416) Porphyromonas gingivalis W83 2552691 PGt37 tRNA tRNA-Ile-3 NC_002950.2 1755418 1755491 R tRNA-Ile complement(1755418..1755491) Porphyromonas gingivalis W83 2552630 PGt38 tRNA tRNA-Glu-1 NC_002950.2 1813108 1813179 D tRNA-Glu 1813108..1813179 Porphyromonas gingivalis W83 2551492 PGt39 tRNA tRNA-Glu-2 NC_002950.2 1813528 1813599 D tRNA-Glu 1813528..1813599 Porphyromonas gingivalis W83 2552466 PGt40 tRNA tRNA-Val-1 NC_002950.2 1874227 1874301 D tRNA-Val 1874227..1874301 Porphyromonas gingivalis W83 2551381 PGt41 tRNA tRNA-Val-2 NC_002950.2 1874344 1874421 D tRNA-Val 1874344..1874421 Porphyromonas gingivalis W83 2551424 PGt42 tRNA tRNA-Lys-1 NC_002950.2 1917177 1917252 R tRNA-Lys complement(1917177..1917252) Porphyromonas gingivalis W83 2551979 PGt43 tRNA tRNA-Asp-2 NC_002950.2 2118850 2118926 R tRNA-Asp complement(2118850..2118926) Porphyromonas gingivalis W83 2552075 PGt44 tRNA tRNA-Lys-2 NC_002950.2 2154315 2154390 R tRNA-Lys complement(2154315..2154390) Porphyromonas gingivalis W83 2552031 PGt45 tRNA tRNA-Ala-5 NC_002950.2 2174148 2174224 R tRNA-Ala complement(2174148..2174224) Porphyromonas gingivalis W83 2551511 PGt46 tRNA tRNA-Ile-4 NC_002950.2 2174226 2174299 R tRNA-Ile complement(2174226..2174299) Porphyromonas gingivalis W83 2551513 PGt47 tRNA tRNA-Met-2 NC_002950.2 2213783 2213859 D tRNA-Met 2213783..2213859 Porphyromonas gingivalis W83 2552488 PGt48 tRNA tRNA-Pro-3 NC_002950.2 2260655 2260730 D tRNA-Pro 2260655..2260730 Porphyromonas gingivalis W83 2552393 PGt49 tRNA tRNA-Met-3 NC_002950.2 2284950 2285024 D tRNA-Met 2284950..2285024 Porphyromonas gingivalis W83 2552259 PGt50 tRNA tRNA-Leu-4 NC_002950.2 2324025 2324108 R tRNA-Leu complement(2324025..2324108) Porphyromonas gingivalis W83 2551738 PGt51 tRNA tRNA-Leu-5 NC_002950.2 2324139 2324224 R tRNA-Leu complement(2324139..2324224) Porphyromonas gingivalis W83 2551735 PGt52 tRNA tRNA-Gly-4 NC_002950.2 2324312 2324387 R tRNA-Gly complement(2324312..2324387) Porphyromonas gingivalis W83 2551718 PGt53 tRNA tRNA-Cys-1 NC_002950.2 2334742 2334812 R tRNA-Cys complement(2334742..2334812) Porphyromonas gingivalis W83 2551608 PG16SA rRNA PG16SA NC_002950.2 119556 121030 D 16S ribosomal RNA 119556..121030 Porphyromonas gingivalis W83 2552647 PG23SA rRNA PG23SA NC_002950.2 121865 124698 D 23S ribosomal RNA 121865..124698 Porphyromonas gingivalis W83 2552511 PG5SA rRNA PG5SA NC_002950.2 124845 124952 D 5S ribosomal RNA 124845..124952 Porphyromonas gingivalis W83 2552499 PG5SB rRNA PG5SB NC_002950.2 1341463 1341570 R 5S ribosomal RNA complement(1341463..1341570) Porphyromonas gingivalis W83 2553134 PG23SB rRNA PG23SB NC_002950.2 1341717 1344550 R 23S ribosomal RNA complement(1341717..1344550) Porphyromonas gingivalis W83 2553126 PG16SB rRNA PG16SB NC_002950.2 1345385 1346859 R 16S ribosomal RNA complement(1345385..1346859) Porphyromonas gingivalis W83 2553148 PG5SC rRNA PG5SC NC_002950.2 1752134 1752241 R 5S ribosomal RNA complement(1752134..1752241) Porphyromonas gingivalis W83 2552736 PG23SC rRNA PG23SC NC_002950.2 1752388 1755221 R 23S ribosomal RNA complement(1752388..1755221) Porphyromonas gingivalis W83 2552689 PG16SC rRNA PG16SC NC_002950.2 1756056 1757530 R 16S ribosomal RNA complement(1756056..1757530) Porphyromonas gingivalis W83 2552628 PG5SD rRNA PG5SD NC_002950.2 2170942 2171049 R 5S ribosomal RNA complement(2170942..2171049) Porphyromonas gingivalis W83 2552743 PG23SD rRNA PG23SD NC_002950.2 2171196 2174029 R 23S ribosomal RNA complement(2171196..2174029) Porphyromonas gingivalis W83 2551521 PG16SD rRNA PG16SD NC_002950.2 2174864 2176338 R 16S ribosomal RNA complement(2174864..2176338) Porphyromonas gingivalis W83 2552659