-- dump date 20140620_001320 -- class Genbank::CDS -- table cds_note -- id note YP_002014714.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002014715.1 KEGG: plt:Plut_0001 DNA-directed DNA polymerase; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain YP_002014716.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: pvi:Cvib_0003 DNA replication and repair protein RecF YP_002014717.1 KEGG: cte:CT2287 hypothetical protein YP_002014718.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: pvi:Cvib_0005 beta-lactamase domain protein YP_002014719.1 PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: cte:CT2284 DNA polymerase family B protein YP_002014720.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002014721.1 KEGG: cph:Cpha266_0029 thiosulfate-binding protein SoxY YP_002014722.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: cph:Cpha266_0030 sulfur oxidation protein SoxZ YP_002014723.1 PFAM: cytochrome c class I; KEGG: pvi:Cvib_0008 sulfide dehydrogenase (flavocytochrome), cytochrome c subunit YP_002014724.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Flavocytochrome c sulphide dehydrogenase flavin-binding; KEGG: cph:Cpha266_0032 sulfide dehydrogenase (flavocytochrome), flavoprotein subunit YP_002014725.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_002014726.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002014727.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: pvi:Cvib_0012 PpiC-type peptidyl-prolyl cis-trans isomerase YP_002014728.1 KEGG: plt:Plut_0010 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II YP_002014729.1 PFAM: protein of unknown function UPF0102; KEGG: cph:Cpha266_0037 hypothetical protein YP_002014730.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002014732.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pvi:Cvib_0016 ribonuclease, Rne/Rng family YP_002014733.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_002014734.1 KEGG: cte:CT2258 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_002014735.1 KEGG: cph:Cpha266_0043 hypothetical protein YP_002014736.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; Lycopene beta and epsilon cyclase; KEGG: cte:CT2256 geranylgeranyl hydrogenase YP_002014737.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002014738.1 PFAM: Rhodanese domain protein; KEGG: cph:Cpha266_0124 rhodanese domain protein YP_002014739.1 PFAM: SirA family protein; KEGG: cph:Cpha266_0125 SirA family protein YP_002014740.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0126 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase YP_002014741.1 TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: pvi:Cvib_0038 DsrC family protein YP_002014742.1 KEGG: cph:Cpha266_0128 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_002014743.1 KEGG: cph:Cpha266_0129 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_002014744.1 unknown function YP_002014745.1 KEGG: cte:CT2246 hypothetical protein YP_002014746.1 TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: cph:Cpha266_0132 DsrE family protein YP_002014747.1 TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: cch:Cag_1951 DsrF protein YP_002014748.1 TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: cte:CT0857 DsrH protein YP_002014749.1 KEGG: cph:Cpha266_0135 hypothetical protein YP_002014750.1 PFAM: Nitrate reductase gamma subunit; KEGG: cph:Cpha266_0136 nitrate reductase, gamma subunit YP_002014751.1 KEGG: cph:Cpha266_0137 DsrK protein YP_002014752.1 KEGG: cte:CT2242 cytochrome DsrJ YP_002014753.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT2241 polysulfide reductase, subunit B YP_002014754.1 PFAM: Polysulphide reductase NrfD; KEGG: cte:CT2240 polysulfide reductase, subunit C YP_002014755.1 KEGG: cte:CT2239 porphyrin biosynthesis protein YP_002014756.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cph:Cpha266_0142 uroporphyrinogen-III C-methyltransferase YP_002014757.1 KEGG: plt:Plut_1102 hypothetical protein YP_002014758.1 PFAM: Patatin; KEGG: cph:Cpha266_1052 patatin YP_002014759.1 KEGG: ter:Tery_3964 hypothetical protein YP_002014760.1 PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: cte:CT2237 hypothetical protein YP_002014761.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: cte:CT2236 muramoyltetrapeptide carboxypeptidase YP_002014762.1 PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: cch:Cag_2015 ATP synthase F1, epsilon subunit YP_002014763.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002014764.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cph:Cpha266_0469 redoxin domain protein YP_002014765.1 catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP YP_002014766.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: cph:Cpha266_0843 membrane protein involved in aromatic hydrocarbon degradation YP_002014767.1 PFAM: protein of unknown function DUF1458; KEGG: cte:CT2229 hypothetical protein YP_002014768.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Polysulphide reductase NrfD; KEGG: cph:Cpha266_0119 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_002014769.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cph:Cpha266_0120 formate dehydrogenase YP_002014770.1 PFAM: protein of unknown function DUF81; KEGG: cte:CT0859 hypothetical protein YP_002014771.1 KEGG: cph:Cpha266_0122 hypothetical protein YP_002014772.1 KEGG: plt:Plut_0031 hypothetical protein YP_002014773.1 KEGG: cph:Cpha266_0053 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases YP_002014774.1 KEGG: hau:Haur_4781 restriction endonuclease YP_002014775.1 KEGG: cph:Cpha266_1478 transposase YP_002014776.1 KEGG: mma:MM_3344 transposase YP_002014777.1 KEGG: cph:Cpha266_2626 transposase YP_002014778.1 PFAM: FRG domain protein; KEGG: bpd:BURPS668_2136 hypothetical protein YP_002014779.1 KEGG: asa:ASA_3858 hypothetical protein YP_002014780.1 PFAM: RelA/SpoT domain protein; KEGG: cph:Cpha266_2058 RelA/SpoT domain protein YP_002014781.1 KEGG: cph:Cpha266_2626 transposase YP_002014782.1 KEGG: cph:Cpha266_2625 transposase YP_002014783.1 KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase YP_002014784.1 KEGG: pvi:Cvib_0152 hypothetical protein YP_002014785.1 PFAM: transposase IS3/IS911 family protein; KEGG: net:Neut_1719 transposase IS3/IS911 family protein YP_002014786.1 PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4608 transposase IS3/IS911 family protein YP_002014788.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein YP_002014789.1 KEGG: dar:Daro_1853 hypothetical protein YP_002014790.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: syn:slr0482 hypothetical protein YP_002014791.1 KEGG: gsu:GSU0181 lipoprotein YP_002014793.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: cph:Cpha266_2627 RNA-directed DNA polymerase (reverse transcriptase) YP_002014794.1 KEGG: aba:Acid345_3771 ErfK/YbiS/YcfS/YnhG YP_002014795.1 KEGG: cph:Cpha266_0061 transmembrane protein YP_002014796.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: cte:CT1003 PhnA protein YP_002014797.1 PFAM: DNA alkylation repair enzyme; KEGG: amr:AM1_5660 hypothetical protein YP_002014798.1 PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: cph:Cpha266_0087 major facilitator superfamily MFS_1 YP_002014799.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: cph:Cpha266_0090 methionine-R-sulfoxide reductase YP_002014800.1 KEGG: cph:Cpha266_0086 hypothetical protein YP_002014801.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_002014802.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_002014803.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_002014804.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: pvi:Cvib_1260 NADH dehydrogenase (quinone) YP_002014805.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_002014806.1 PFAM: multiple resistance and pH regulation protein F; KEGG: pvi:Cvib_1262 multiple resistance and pH regulation protein F YP_002014807.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pvi:Cvib_1263 monovalent cation/proton antiporter, MnhG/PhaG subunit YP_002014808.1 KEGG: fjo:Fjoh_1367 phytase YP_002014809.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bvu:BVU_1231 TonB-dependent outer membrane receptor protein YP_002014810.1 KEGG: cph:Cpha266_1423 hypothetical protein YP_002014811.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cph:Cpha266_0951 alpha amylase, catalytic region YP_002014812.1 PFAM: Cache type 2 domain protein; KEGG: gur:Gura_3066 cache, type 2 domain protein YP_002014813.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: pth:PTH_2271 xanthine/uracil permeases YP_002014814.1 PFAM: cation transporter; KEGG: dps:DP0723 trk system potassium uptake protein (TrkH) YP_002014815.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_002014816.1 KEGG: cph:Cpha266_1476 hypothetical protein YP_002014817.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: gsu:GSU2760 NAD(P)H oxidoreductase YP_002014818.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: gvi:glr1343 glutathione-regulated potassium efflux system protein KefC homolog YP_002014819.1 TIGRFAM: hydrolase, peptidase M42 family; PFAM: peptidase M42 family protein; KEGG: met:M446_2678 hydrolase, peptidase M42 family YP_002014820.1 KEGG: eba:ebA5272 acetyltransferase; TIGRFAM: GNAT-family acetyltransferase TIGR03103; PFAM: GCN5-related N-acetyltransferase YP_002014821.1 KEGG: met:M446_2680 asparagine synthase family amidotransferase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); asparagine synthase family amidotransferase; PFAM: glutamine amidotransferase class-II; asparagine synthase YP_002014822.1 KEGG: cte:CT0116 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_002014823.1 PFAM: nitroreductase; KEGG: cph:Cpha266_2684 nitroreductase YP_002014824.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: cte:CT0121 potassium channel protein YP_002014825.1 KEGG: cph:Cpha266_2683 hypothetical protein YP_002014826.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002014827.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: cte:CT0124 membrane-associated zinc metalloprotease YP_002014828.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002014829.1 PFAM: acylphosphatase; KEGG: cph:Cpha266_2679 acylphosphatase YP_002014830.1 KEGG: cph:Cpha266_2678 FtsH-2 peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002014831.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: plt:Plut_0079 orotidine 5'-phosphate decarboxylase subfamily 2 YP_002014832.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002014833.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility domain; domain of unknown function DUF1731; KEGG: pvi:Cvib_0161 domain of unknown function DUF1731 YP_002014834.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cph:Cpha266_2673 RNP-1 like RNA-binding protein YP_002014835.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: plt:Plut_0089 ammonium transporter YP_002014836.1 PFAM: nitrogen regulatory protein P-II; KEGG: cte:CT0134 P-II family protein YP_002014837.1 PFAM: peptidase C1A papain; KEGG: cph:Cpha266_2670 peptidase C1A, papain YP_002014838.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_2669 TPR repeat-containing protein YP_002014839.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: cte:CT0136 segregation and condensation protein A YP_002014840.1 PFAM: conserved hypothetical protein; KEGG: plt:Plut_0094 hypothetical protein YP_002014841.1 PFAM: protein of unknown function UPF0079; KEGG: cte:CT0138 nucleotide-binding protein YP_002014842.1 PFAM: peptidase M22 glycoprotease; KEGG: plt:Plut_0096 protease YP_002014843.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cte:CT0140 iojap-related protein YP_002014844.1 KEGG: cph:Cpha266_2663 DNA gyrase subunit A; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller YP_002014845.1 SMART: zinc finger CDGSH-type domain protein; KEGG: plt:Plut_0099 Zn-finger, CDGSH type YP_002014846.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002014848.1 KEGG: plt:Plut_0883 hypothetical protein YP_002014849.1 PFAM: Radical SAM domain protein; KEGG: plt:Plut_0870 arylsulfatase regulator (Fe-S oxidoreductase) YP_002014851.1 PFAM: Na+/H+ antiporter NhaA; KEGG: acr:Acry_3215 Na+/H+ antiporter NhaA YP_002014852.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0756 PHP C-terminal domain protein YP_002014853.1 KEGG: cph:Cpha266_1210 DNA topoisomerase, type IA, zn finger domain protein YP_002014854.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: cph:Cpha266_0755 catalase/peroxidase HPI YP_002014855.1 PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0754 ferric uptake regulator, Fur family YP_002014856.1 KEGG: noc:Noc_1786 hypothetical protein YP_002014858.1 KEGG: pgi:PG0423 hypothetical protein YP_002014859.1 KEGG: hne:HNE_0867 hypothetical protein YP_002014860.1 PFAM: thioesterase superfamily protein; KEGG: cph:Cpha266_2516 thioesterase superfamily protein YP_002014861.1 KEGG: cph:Cpha266_2515 hypothetical protein YP_002014862.1 PFAM: glycosyl transferase family 9; KEGG: cph:Cpha266_2514 glycosyl transferase, family 9 YP_002014863.1 KEGG: cph:Cpha266_2513 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_002014864.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002014865.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cph:Cpha266_2511 single-strand binding protein YP_002014866.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002014867.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002014868.1 KEGG: cph:Cpha266_2508 hypothetical protein YP_002014869.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002014870.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002014871.1 PFAM: ribosomal protein L35; KEGG: cte:CT2128 50S ribosomal protein L35 YP_002014872.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002014873.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002014874.1 TIGRFAM: chlorophyllide reductase subunit Z; PFAM: oxidoreductase/nitrogenase component 1; protein of unknown function DUF1197; KEGG: cch:Cag_1716 chlorophyllide reductase subunit Z YP_002014875.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cph:Cpha266_2499 glycoside hydrolase, family 3 domain protein YP_002014876.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: cph:Cpha266_2497 HNH endonuclease YP_002014877.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002014878.1 PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: cte:CT2119 ribonuclease III YP_002014879.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: cph:Cpha266_2494 3-oxoacyl-[acyl-carrier-protein] synthase II YP_002014880.1 carries the fatty acid chain in fatty acid biosynthesis YP_002014881.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plt:Plut_0131 3-oxoacyl-(acyl-carrier-protein) reductase YP_002014882.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cch:Cag_1663 malonyl CoA-acyl carrier protein transacylase YP_002014883.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002014884.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002014885.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002014886.1 PFAM: protein of unknown function DUF177; KEGG: cte:CT2111 hypothetical protein YP_002014887.1 KEGG: cph:Cpha266_2479 excinuclease ABC, C subunit domain protein YP_002014888.1 PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: ypy:YPK_1090 copper resistance lipoprotein NlpE YP_002014889.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cte:CT2107 2-isopropylmalate synthase YP_002014890.1 PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_2477 ferric uptake regulator, Fur family YP_002014891.1 PFAM: periplasmic solute binding protein; KEGG: cte:CT2106 adhesion protein YP_002014892.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_2475 ABC transporter related YP_002014893.1 PFAM: ABC-3 protein; KEGG: cph:Cpha266_2474 ABC-3 protein YP_002014894.1 KEGG: cph:Cpha266_1639 hypothetical protein YP_002014895.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: syf:Synpcc7942_0242 K+-dependent Na+/Ca+ exchanger related-protein YP_002014896.1 KEGG: plt:Plut_2041 hypothetical protein YP_002014897.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002014898.1 PFAM: protein of unknown function DUF190; KEGG: plt:Plut_2039 hypothetical protein YP_002014899.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002014900.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: cch:Cag_1969 recombination protein O, RecO YP_002014901.1 TIGRFAM: regulatory protein, FmdB family; PFAM: regulatory protein FmdB; KEGG: cch:Cag_1970 hypothetical protein YP_002014902.1 KEGG: cph:Cpha266_2554 hypothetical protein YP_002014903.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: cph:Cpha266_2553 UDP-N-acetylglucosamine 2-epimerase YP_002014904.1 KEGG: sde:Sde_3519 hypothetical protein YP_002014905.1 PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1913 hypothetical protein YP_002014906.1 KEGG: hau:Haur_3056 PGAP1 family protein YP_002014907.1 PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: sbm:Shew185_4384 peptidase C14 caspase catalytic subunit P20 YP_002014908.1 PFAM: OsmC family protein; KEGG: cph:Cpha266_1720 OsmC family protein YP_002014909.1 SMART: TIR protein; KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain YP_002014910.1 KEGG: lpc:LPC_1854 hypothetical protein YP_002014911.1 PFAM: Peptidase M23; KEGG: plt:Plut_2033 membrane proteins related to metalloendopeptidase-like YP_002014912.1 PFAM: metallophosphoesterase; KEGG: cte:CT2092 hypothetical protein YP_002014913.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: plt:Plut_2031 peptide chain release factor 2 YP_002014914.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cte:CT2089 alpha-amylase family protein YP_002014915.1 KEGG: pvi:Cvib_1672 trehalose synthase; TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_002014916.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: tpd:Teth39_0231 calcium-translocating P-type ATPase, PMCA-type YP_002014917.1 PFAM: phospholipase/Carboxylesterase; KEGG: cte:CT2087 esterase/lipase YP_002014919.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_002014920.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT2085 oxidoreductase, short-chain dehydrogenase/reductase family YP_002014921.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002014922.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: cph:Cpha266_1107 holo-acyl-carrier-protein synthase YP_002014923.1 KEGG: maq:Maqu_2212 hypothetical protein YP_002014924.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: plt:Plut_2019 rare lipoprotein A YP_002014926.1 KEGG: cph:Cpha266_0213 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_002014927.1 KEGG: cph:Cpha266_0211 hypothetical protein YP_002014928.1 KEGG: pvi:Cvib_1657 hypothetical protein YP_002014929.1 PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_0209 pentapeptide repeat protein YP_002014930.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tbd:Tbd_0883 probable membrane protein YP_002014931.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cph:Cpha266_0208 NAD-dependent epimerase/dehydratase YP_002014932.1 PFAM: Radical SAM domain protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_2089 methyltransferase YP_002014933.1 KEGG: bth:BT_0197 hypothetical protein YP_002014934.1 KEGG: cte:CT2064 chlorosome envelope protein D YP_002014935.1 PFAM: bacteriochlorophyll C binding protein; KEGG: cch:Cag_0250 chlorosome envelope protein E YP_002014936.1 PFAM: Na+/solute symporter; KEGG: cph:Cpha266_0206 Na+/solute symporter YP_002014937.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0205 uncharacterised conserved protein UCP016719 YP_002014938.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT2056 mannose-1-phosphate guanylyltransferase YP_002014939.1 PFAM: aminoglycoside phosphotransferase; KEGG: plt:Plut_2006 hypothetical protein YP_002014940.1 KEGG: cph:Cpha266_0202 chlorosome envelope protein B YP_002014941.1 KEGG: pvi:Cvib_0368 hypothetical protein YP_002014943.1 KEGG: cph:Cpha266_0187 hypothetical protein YP_002014944.1 PFAM: protein of unknown function DUF156; KEGG: cph:Cpha266_0184 hypothetical protein YP_002014945.1 KEGG: cch:Cag_1604 hypothetical protein YP_002014946.1 PFAM: outer membrane efflux protein; KEGG: cte:CT2049 LipD protein YP_002014947.1 KEGG: plt:Plut_2000 hypothetical protein YP_002014948.1 PFAM: acriflavin resistance protein; KEGG: cph:Cpha266_0181 acriflavin resistance protein YP_002014949.1 KEGG: plt:Plut_1998 hypothetical protein YP_002014950.1 PFAM: beta-lactamase domain protein; KEGG: cph:Cpha266_0179 beta-lactamase domain protein YP_002014951.1 PFAM: CBS domain containing protein; KEGG: cch:Cag_0126 CBS YP_002014952.1 KEGG: cte:CT2042 succinate/fumarate oxidoreductase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002014953.1 KEGG: cph:Cpha266_0176 succinate dehydrogenase subunit B; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_002014954.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: plt:Plut_1993 succinate/fumarate oxidoreductase YP_002014955.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002014957.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: pvi:Cvib_1634 ion transport protein YP_002014958.1 PFAM: UspA domain protein; KEGG: cph:Cpha266_2551 UspA domain protein YP_002014960.1 TIGRFAM: phosphoheptose isomerase; KEGG: cph:Cpha266_2549 phosphoheptose isomerase YP_002014961.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002014962.1 KEGG: cph:Cpha266_0617 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002014963.1 KEGG: cte:CT2036 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase YP_002014964.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002014965.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002014966.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002014967.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the gamma chain is a regulatory subunit YP_002014968.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_002014969.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cte:CT2029 competence/damage-inducible protein CinA YP_002014971.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: cph:Cpha266_0172 DNA mismatch repair protein MutL YP_002014972.1 PFAM: cytochrome c class I; KEGG: cph:Cpha266_0171 C-type cytochrome YP_002014973.1 TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: cph:Cpha266_0170 monofunctional biosynthetic peptidoglycan transglycosylase YP_002014974.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mem:Memar_0021 daunorubicin resistance ABC transporter ATPase subunit YP_002014975.1 PFAM: ABC-2 type transporter; KEGG: mac:MA1597 hypothetical protein YP_002014976.1 PFAM: protein of unknown function DUF52; KEGG: mca:MCA0072 hypothetical protein YP_002014977.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002014978.1 KEGG: cph:Cpha266_0219 photosystem P840 reaction center, large subunit YP_002014979.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: plt:Plut_1975 photosystem P840 reaction center iron-sulfur protein YP_002014980.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_0221 dolichyl-phosphate beta-D-mannosyltransferase YP_002014981.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002014982.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002014983.1 PFAM: Septum formation initiator; KEGG: cph:Cpha266_0224 septum formation initiator YP_002014984.1 KEGG: cte:CT0147 GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein YP_002014985.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: plt:Plut_1969 oxidoreductase, short-chain dehydrogenase/reductase family YP_002014986.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002014987.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KEGG: cph:Cpha266_0228 transcription antitermination protein NusG YP_002014988.1 binds directly to 23S ribosomal RNA YP_002014989.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002014990.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002014991.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002014992.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002014993.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002014994.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cph:Cpha266_0235 acetyl-CoA carboxylase, biotin carboxylase YP_002014995.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cph:Cpha266_0236 biotin carboxyl carrier protein YP_002014996.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002014997.1 PFAM: histone family protein DNA-binding protein; KEGG: cph:Cpha266_0238 histone family protein DNA-binding protein YP_002014998.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002014999.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_002015000.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cph:Cpha266_0241 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein YP_002015001.1 KEGG: cte:CT0164 hypothetical protein YP_002015003.1 SMART: PAS domain containing protein; KEGG: cph:Cpha266_1785 PAS/PAC sensor protein YP_002015004.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: vha:VIBHAR_02199 hypothetical protein YP_002015005.1 KEGG: cte:CT1067 hypothetical protein YP_002015006.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002015007.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_0245 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_002015009.1 KEGG: sfr:Sfri_0885 hypothetical protein YP_002015010.1 PFAM: N-6 DNA methylase; KEGG: ava:Ava_1159 N-6 DNA methylase YP_002015011.1 PFAM: protein of unknown function DUF1016; KEGG: mma:MM_2979 hypothetical protein YP_002015012.1 PFAM: restriction modification system DNA specificity domain; KEGG: xfa:XF0296 type I restriction-modification system specificity determinant YP_002015013.1 KEGG: mms:mma_0004 hypothetical protein YP_002015014.1 PFAM: protein of unknown function DUF87; KEGG: mms:mma_0005 hypothetical protein YP_002015015.1 KEGG: ava:Ava_1156 type I site-specific deoxyribonuclease HsdR; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; protein of unknown function DUF1568; SMART: DEAD-like helicases YP_002015016.1 PFAM: protein of unknown function DUF45; KEGG: ava:Ava_1155 metal-dependent hydrolase-like YP_002015017.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: cph:Cpha266_0244 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002015018.1 KEGG: cte:CT0173 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3 YP_002015019.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002015020.1 KEGG: pvi:Cvib_1588 penicillin-binding protein, 1A family; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase YP_002015021.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT0177 proline iminopeptidase YP_002015022.1 PFAM: transcription activator effector binding; KEGG: cte:CT0179 hypothetical protein YP_002015023.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cte:CT0180 lycopene cyclase YP_002015024.1 KEGG: cch:Cag_1575 hypothetical protein YP_002015025.1 KEGG: cte:CT0182 hypothetical protein YP_002015026.1 KEGG: cph:Cpha266_0310 C-type cytochrome YP_002015027.1 KEGG: pvi:Cvib_0150 hypothetical protein YP_002015028.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: pvi:Cvib_1582 NAD-dependent epimerase/dehydratase YP_002015029.1 KEGG: cph:Cpha266_0487 hypothetical protein YP_002015030.1 TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pdi:BDI_1239 ATP:cob(I)alamin adenosyltransferase YP_002015031.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cph:Cpha266_0312 cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) YP_002015032.1 KEGG: cph:Cpha266_0313 hypothetical protein YP_002015033.1 KEGG: cte:CT0190 hypothetical protein YP_002015034.1 PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_0334 ATPase AAA-2 domain protein YP_002015035.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_002015036.1 TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: cte:CT0199 thiamine-monophosphate kinase YP_002015037.1 KEGG: cch:Cag_1212 cell division transporter substrate-binding protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_002015038.1 KEGG: cte:CT0201 hypothetical protein YP_002015039.1 KEGG: cte:CT0202 protein-L-isoaspartate (D-aspartate) O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_002015040.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: plt:Plut_1922 peptidyl-prolyl cis-trans isomerase, PpiC-type YP_002015041.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cte:CT0204 phosphoenolpyruvate-protein phosphotransferase YP_002015042.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cch:Cag_1608 DnaB helicase YP_002015043.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cte:CT0206 DNA polymerase bacteriophage-type YP_002015044.1 KEGG: cte:CT0207 pantothenate metabolism flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein YP_002015045.1 KEGG: cph:Cpha266_0345 hypothetical protein YP_002015046.1 TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: plt:Plut_1901 RfaE bifunctional protein, domain II YP_002015047.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: pvi:Cvib_0671 lipid A biosynthesis acyltransferase YP_002015049.1 KEGG: pen:PSEEN2952 hypothetical protein YP_002015050.1 KEGG: aeh:Mlg_2363 hypothetical protein YP_002015051.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cch:Cag_1482 ATPase YP_002015052.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2332 glycosyl transferase, family 2 YP_002015054.1 KEGG: lpl:lp_0411 plantaricin biosynthesis protein PlnO YP_002015055.1 PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0675 glycosyl transferase, group 1 YP_002015056.1 PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0678 glycosyl transferase, group 1 YP_002015057.1 PFAM: glycosyl transferase family 2; KEGG: pvi:Cvib_0681 glycosyl transferase, family 2 YP_002015058.1 PFAM: glycosyl transferase family 9; KEGG: cte:CT0221 heptosyltransferase YP_002015059.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0224 glycosyl transferase YP_002015060.1 PFAM: glycosyl transferase group 1; KEGG: pvi:Cvib_0690 glycosyl transferase, group 1 YP_002015061.1 KEGG: pvi:Cvib_0691 hypothetical protein YP_002015062.1 PFAM: glycosyl transferase group 1; KEGG: cch:Cag_1472 glycosyl transferase YP_002015063.1 PFAM: Abortive infection protein; KEGG: plt:Plut_1789 hypothetical protein YP_002015064.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cch:Cag_1470 phosphatidate cytidylyltransferase YP_002015065.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: plt:Plut_1787 PTS IIA-like nitrogen-regulatory protein PtsN YP_002015066.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002015067.1 PFAM: glutaredoxin 2; KEGG: mxa:MXAN_3212 hypothetical protein YP_002015069.1 PFAM: protein of unknown function DUF150; KEGG: cph:Cpha266_0367 protein of unknown function DUF150 YP_002015070.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002015071.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Miro domain protein; KEGG: cte:CT0241 translation initiation factor IF-2 YP_002015072.1 PFAM: ribosome-binding factor A; KEGG: cte:CT0242 ribosome-binding factor A YP_002015073.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cte:CT0243 tRNA pseudouridine synthase B YP_002015074.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; KEGG: plt:Plut_1776 riboflavin kinase / FAD synthetase YP_002015075.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002015076.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cph:Cpha266_0374 hypothetical protein YP_002015077.1 Essential for recycling GMP and indirectly, cGMP YP_002015078.1 KEGG: plt:Plut_1772 hypothetical protein YP_002015079.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cte:CT0249 glutathione S-transferase, fosfomycin resistance protein YP_002015080.1 PFAM: phosphofructokinase; KEGG: cte:CT0250 6-phosphofructokinase YP_002015082.1 PFAM: Nucleotidyl transferase; KEGG: cte:CT0251 UDP-N-acetylglucosamine pyrophosphorylase YP_002015083.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002015084.1 PFAM: protein of unknown function DUF1239; KEGG: pvi:Cvib_1550 protein of unknown function DUF1239 YP_002015085.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: pvi:Cvib_1549 outer membrane chaperone Skp (OmpH) YP_002015086.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cph:Cpha266_0383 DNA protecting protein DprA YP_002015087.1 PFAM: Polyprenyl synthetase; KEGG: pvi:Cvib_1546 geranyltranstransferase YP_002015088.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_002015089.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0386 protein of unknown function DUF214 YP_002015090.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0260 phosphoglucomutase/phosphomannomutase family protein YP_002015091.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0387 ABC transporter related YP_002015092.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002015093.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002015094.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cph:Cpha266_0391 FolC bifunctional protein YP_002015095.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002015096.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: noc:Noc_0710 tripartite ATP-independent periplasmic transporter, DctQ component YP_002015097.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: noc:Noc_0709 TRAP dicarboxylate transporter, DctM subunit YP_002015098.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hch:HCH_00744 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component YP_002015099.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: plt:Plut_1755 electron transfer flavoprotein beta subunit YP_002015100.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: pvi:Cvib_1535 electron transfer flavoprotein, alpha subunit YP_002015101.1 PFAM: UvrB/UvrC protein; protein of unknown function DUF151; KEGG: cte:CT0265 hypothetical protein YP_002015102.1 PFAM: surface antigen msp4 family protein; KEGG: cph:Cpha266_0396 hypothetical protein YP_002015103.1 KEGG: cph:Cpha266_0396 hypothetical protein YP_002015104.1 TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pvi:Cvib_1532 surface antigen (D15) YP_002015105.1 KEGG: cph:Cpha266_0398 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_002015106.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002015107.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cte:CT0269 succinyl-CoA synthetase alpha chain YP_002015108.1 KEGG: cph:Cpha266_0401 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_002015109.1 KEGG: cte:CT0272 hypothetical protein YP_002015110.1 PFAM: polysaccharide biosynthesis protein; KEGG: pvi:Cvib_1526 polysaccharide biosynthesis protein YP_002015111.1 KEGG: cph:Cpha266_0404 hypothetical protein YP_002015112.1 KEGG: cte:CT0277 hypothetical protein YP_002015113.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cte:CT0278 RNA polymerase sigma-70 factor, ECF subfamily YP_002015114.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0795 hypothetical protein YP_002015115.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cte:CT0279 phosphoglucomutase/phosphomannomutase family protein YP_002015116.1 KEGG: plt:Plut_1739 glycosyl transferase, family 19; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19 YP_002015117.1 KEGG: cph:Cpha266_0412 hypothetical protein YP_002015118.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: abu:Abu_0012 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_002015119.1 PFAM: TOBE domain protein; KEGG: plt:Plut_1711 hypothetical protein YP_002015120.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sun:SUN_2103 molybdenum ABC transporter, permease YP_002015121.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1712 ATPase YP_002015122.1 these proteins belong to a family of oxidoreductases related to the NADPH-dependent glutamate synthase YP_002015123.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002015124.1 KEGG: cph:Cpha266_0432 hypothetical protein YP_002015125.1 KEGG: cte:CT1768 hypothetical protein YP_002015126.1 KEGG: cte:CT1767 hypothetical protein YP_002015128.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pvi:Cvib_1495 short-chain dehydrogenase/reductase SDR YP_002015129.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0473 ABC transporter related YP_002015130.1 KEGG: cph:Cpha266_0474 hypothetical protein YP_002015131.1 KEGG: cch:Cag_0275 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase YP_002015132.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0476 conserved hypothetical protein 730 YP_002015133.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_0478 demethylmenaquinone methyltransferase YP_002015134.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002015135.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cte:CT0464 membrane fusion protein YP_002015136.1 PFAM: Auxin Efflux Carrier; KEGG: pvi:Cvib_1479 auxin efflux carrier YP_002015137.1 PFAM: protein of unknown function DUF88; KEGG: cph:Cpha266_0482 protein of unknown function DUF88 YP_002015138.1 KEGG: plt:Plut_2079 Fibrobacter succinogenes major paralogous domain YP_002015139.1 PFAM: protein of unknown function DUF1499; KEGG: cph:Cpha266_0483 protein of unknown function DUF1499 YP_002015140.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain YP_002015141.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: cph:Cpha266_0490 ferredoxin--NADP(+) reductase subunit alpha YP_002015142.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002015143.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002015144.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: pvi:Cvib_1474 condensin subunit ScpB YP_002015145.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cte:CT0479 ribosomal small subunit pseudouridine synthase A YP_002015146.1 KEGG: cte:CT0480 hypothetical protein YP_002015147.1 KEGG: rle:RL1102 hypothetical protein YP_002015148.1 KEGG: dde:Dde_3339 hypothetical protein YP_002015151.1 KEGG: xau:Xaut_0226 hypothetical protein YP_002015152.1 PFAM: restriction endonuclease; KEGG: cak:Caul_4287 restriction endonuclease YP_002015153.1 PFAM: SMC domain protein; KEGG: har:HEAR2007 hypothetical protein YP_002015154.1 PFAM: transposase IS3/IS911 family protein; KEGG: bxe:Bxe_C1332 transposase IS3/IS911 YP_002015155.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cte:CT1715 SUA5/YciO/YrdC family protein YP_002015156.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0497 phosphatidate cytidylyltransferase YP_002015157.1 PFAM: Ppx/GppA phosphatase; KEGG: cte:CT1713 exopolyphosphatase YP_002015158.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Chorismate binding-like; KEGG: cte:CT1712 para-aminobenzoate synthetase YP_002015159.1 KEGG: pvi:Cvib_1467 hypothetical protein YP_002015160.1 KEGG: cph:Cpha266_0501 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein YP_002015161.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_2593 metallophosphoesterase YP_002015162.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cte:CT1709 N utilization substance protein B YP_002015163.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cch:Cag_0418 hydrolase, haloacid dehalogenase-like family YP_002015164.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cph:Cpha266_0504 chromosome segregation protein SMC YP_002015165.1 KEGG: cph:Cpha266_0505 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_002015166.1 PFAM: peptidase M50; KEGG: cph:Cpha266_0506 peptidase M50 YP_002015167.1 KEGG: cph:Cpha266_0507 cytochrome c YP_002015168.1 KEGG: cph:Cpha266_0508 methyltransferase type 12 YP_002015169.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002015171.1 PFAM: NADPH-dependent FMN reductase; KEGG: pca:Pcar_2463 hypothetical protein YP_002015172.1 KEGG: cph:Cpha266_0294 hypothetical protein YP_002015173.1 PFAM: regulatory protein ArsR; KEGG: cte:CT0812 transcriptional regulator, ArsR family YP_002015174.1 PFAM: permease; KEGG: cph:Cpha266_0757 permease YP_002015175.1 PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: cph:Cpha266_2534 protein of unknown function DUF900, hydrolase family protein YP_002015176.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_2591 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_002015177.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cph:Cpha266_0517 excinuclease ABC subunit A YP_002015178.1 KEGG: plt:Plut_1100 hypothetical protein YP_002015180.1 KEGG: pvi:Cvib_0848 hypothetical protein YP_002015181.1 KEGG: plt:Plut_1105 hypothetical protein YP_002015182.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002015183.1 PFAM: inner-membrane translocator; KEGG: cph:Cpha266_0519 inner-membrane translocator YP_002015184.1 PFAM: ThiJ/PfpI domain protein; KEGG: cte:CT1680 es1 family protein YP_002015185.1 KEGG: cph:Cpha266_0523 hypothetical protein YP_002015186.1 KEGG: cph:Cpha266_0524 hypothetical protein YP_002015187.1 PFAM: isochorismatase hydrolase; KEGG: cph:Cpha266_0525 isochorismatase hydrolase YP_002015188.1 KEGG: cch:Cag_0169 tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase YP_002015189.1 PFAM: protein of unknown function DUF374; KEGG: cph:Cpha266_0527 protein of unknown function DUF374 YP_002015190.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002015191.1 KEGG: cph:Cpha266_0529 hypothetical protein YP_002015192.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: plt:Plut_1651 carbamoyl-phosphate synthase, medium subunit YP_002015193.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002015194.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: pvi:Cvib_1438 ribulose-5-phosphate 3-epimerase YP_002015195.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: cte:CT1669 hypothetical protein YP_002015196.1 KEGG: plt:Plut_1647 hypothetical protein YP_002015197.1 KEGG: cte:CT1667 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2 YP_002015198.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: plt:Plut_1644 prephenate dehydratase YP_002015199.1 PFAM: protein of unknown function DUF28; KEGG: cch:Cag_0165 hypothetical protein YP_002015200.1 KEGG: cph:Cpha266_0539 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_002015201.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cte:CT1663 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002015202.1 catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis YP_002015203.1 PFAM: inositol monophosphatase; KEGG: cph:Cpha266_0543 inositol-phosphate phosphatase YP_002015204.1 PFAM: TspO/MBR family protein; KEGG: cph:Cpha266_0544 TspO and MBR like proteins YP_002015205.1 KEGG: dvl:Dvul_2575 nuclease (SNase domain protein) YP_002015206.1 KEGG: cph:Cpha266_0295 hypothetical protein YP_002015207.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002015208.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002015209.1 KEGG: cph:Cpha266_0552 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein YP_002015210.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002015211.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT1646 tetrapyrrole methylase family protein YP_002015212.1 KEGG: cte:CT1645 peptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002015213.1 KEGG: cph:Cpha266_0556 Signal peptide peptidase A. Serine peptidase. MEROPS family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49 YP_002015214.1 PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tdn:Tmden_0615 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_002015215.1 KEGG: cph:Cpha266_0558 Mg chelatase, subunit ChlI; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002015216.1 KEGG: cte:CT1639 photosystem P840 reaction center cytochrome c-551 YP_002015217.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002015218.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1626 hypothetical protein YP_002015219.1 KEGG: cph:Cpha266_0563 hypothetical protein YP_002015220.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cph:Cpha266_0564 tyrosine recombinase XerC subunit YP_002015221.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: cph:Cpha266_0565 hypothetical protein YP_002015222.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002015223.1 PFAM: extracellular solute-binding protein family 5; KEGG: pvi:Cvib_1411 extracellular solute-binding protein, family 5 YP_002015224.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pvi:Cvib_1410 binding-protein-dependent transport systems inner membrane component YP_002015225.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002015226.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0570 tetratricopeptide TPR_2 repeat protein YP_002015227.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: cph:Cpha266_2044 CRISPR-associated protein Cas6 YP_002015229.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pvi:Cvib_1055 methyltransferase type 12 YP_002015230.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pvi:Cvib_1457 transcriptional regulator, BadM/Rrf2 family YP_002015232.1 KEGG: dol:Dole_0110 hypothetical protein YP_002015233.1 KEGG: mar:MAE_56260 hypothetical protein YP_002015234.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cch:Cag_1730 pyruvate:ferredoxin (flavodoxin) oxidoreductase YP_002015236.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cch:Cag_1731 RNA methyltransferase TrmH, group 3 YP_002015237.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pvi:Cvib_1405 glycine cleavage system H protein YP_002015238.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002015239.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002015240.1 KEGG: cte:CT1618 recombination/replication protein RecN; TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; SMART: AAA ATPase YP_002015241.1 KEGG: sru:SRU_1396 hypothetical protein YP_002015242.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pvi:Cvib_1401 twin-arginine translocation protein, TatA/E family subunit YP_002015243.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine YP_002015244.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: cch:Cag_1746 MesJ protein YP_002015245.1 KEGG: cph:Cpha266_0580 hypothetical protein YP_002015246.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002015247.1 required for 70S ribosome assembly YP_002015248.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cte:CT1610 bacteriochlorophyll a synthase YP_002015249.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002015250.1 PFAM: creatinase; peptidase M24; KEGG: plt:Plut_1603 aminopeptidase P YP_002015251.1 KEGG: cph:Cpha266_0587 DNA-directed DNA polymerase YP_002015252.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002015253.1 PFAM: phosphofructokinase; KEGG: cte:CT1603 phosphofructokinase YP_002015254.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_0590 protein of unknown function DUF214 YP_002015255.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002015256.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: cph:Cpha266_0593 dihydroorotate oxidase B, catalytic subunit YP_002015257.1 KEGG: pvi:Cvib_1386 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_002015258.1 PFAM: metallophosphoesterase; KEGG: cph:Cpha266_0595 metallophosphoesterase YP_002015259.1 PFAM: Ferritin Dps family protein; KEGG: cph:Cpha266_0596 ferritin, Dps family protein YP_002015260.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: cya:CYA_2605 flavodoxin FldA YP_002015261.1 KEGG: cph:Cpha266_0323 hypothetical protein YP_002015262.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: nis:NIS_1422 periplasmic protein TonB YP_002015263.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: psp:PSPPH_0912 TonB system transport protein YP_002015264.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein YP_002015265.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT1754 receptor YP_002015266.1 KEGG: cch:Cag_0916 C-type cytochrome YP_002015267.1 KEGG: bsu:BSU07190 hypothetical protein YP_002015268.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0852 TonB-dependent outer membrane receptor for Fe3+/colicin I YP_002015269.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mac:MA3471 hypothetical protein YP_002015270.1 KEGG: bvu:BVU_2510 hypothetical protein YP_002015271.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mst:Msp_1561 hypothetical protein YP_002015272.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bfr:BF1811 TonB-dependent outer membrane receptor YP_002015273.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein YP_002015274.1 KEGG: plt:Plut_1587 hypothetical protein YP_002015275.1 KEGG: cte:CT1584 hypothetical protein YP_002015276.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like YP_002015278.1 KEGG: cph:Cpha266_0322 hypothetical protein YP_002015279.1 PFAM: iron dependent repressor; FeoA family protein; KEGG: cte:CT1737 iron-dependent repressor YP_002015280.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1261 ferredoxin, 4Fe-4S YP_002015281.1 KEGG: cph:Cpha266_0315 hypothetical protein YP_002015282.1 KEGG: pvi:Cvib_1384 hypothetical protein YP_002015283.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: deb:DehaBAV1_0363 Rieske (2Fe-2S) domain protein YP_002015284.1 KEGG: gvi:glr2729 hypothetical protein YP_002015285.1 PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; RimK domain protein ATP-grasp; KEGG: cph:Cpha266_0599 carbamoyl-phosphate synthase large subunit YP_002015286.1 KEGG: pvi:Cvib_1382 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II YP_002015287.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002015288.1 PFAM: protein of unknown function nitrogen fixation; KEGG: dsy:DSY0169 hypothetical protein YP_002015289.1 KEGG: cph:Cpha266_0602 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein YP_002015291.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: cte:CT1586 MotA/TolQ/ExbB proton channel family protein YP_002015292.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_1587 hypothetical protein YP_002015293.1 KEGG: cte:CT1584 hypothetical protein YP_002015294.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: plt:Plut_1585 TonB-like YP_002015295.1 KEGG: cte:CT0366 hypothetical protein YP_002015296.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_002015297.1 KEGG: cph:Cpha266_0610 hypothetical protein YP_002015298.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: plt:Plut_1582 NADH dehydrogenase YP_002015299.1 PFAM: protein of unknown function DUF985; KEGG: cte:CT0370 hypothetical protein YP_002015300.1 KEGG: pvi:Cvib_1371 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_002015301.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002015302.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: cph:Cpha266_0615 oxidoreductase domain protein YP_002015303.1 PFAM: small multidrug resistance protein; KEGG: cte:CT0374 SugE protein YP_002015304.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0375 ABC transporter, ATP-binding protein YP_002015305.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cre:CHLREDRAFT_205572 chlorophyll b reductase Pfam: adh_short KR Epimerase DUF699 NAD_binding_4 PROSITE: ADH_SHORT YP_002015306.1 PFAM: coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; KEGG: cph:Cpha266_0696 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein YP_002015307.1 KEGG: mgm:Mmc1_3085 hypothetical protein YP_002015308.1 PFAM: protein of unknown function DUF1704; KEGG: gfo:GFO_1740 hypothetical protein YP_002015309.1 The second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione YP_002015310.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002015311.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cch:Cag_0190 cytosine deaminase YP_002015312.1 KEGG: cte:CT0397 hypothetical protein YP_002015313.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: pvi:Cvib_0556 2-nitropropane dioxygenase, NPD YP_002015314.1 KEGG: cph:Cpha266_0627 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase YP_002015315.1 PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cph:Cpha266_0628 glutamate synthase (NADH) large subunit YP_002015316.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_002015317.1 KEGG: cte:CT0403 hypothetical protein YP_002015318.1 binds and unfolds substrates as part of the ClpXP protease YP_002015319.1 PFAM: integrase family protein; KEGG: cph:Cpha266_2069 phage integrase family protein YP_002015320.1 KEGG: cph:Cpha266_2044 CRISPR-associated protein Cas6 YP_002015321.1 PFAM: NMT1/THI5 like domain protein; KEGG: bra:BRADO5375 hypothetical protein; signal peptide; ABC transporter YP_002015322.1 KEGG: cbl:CLK_0123 YebB YP_002015323.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pnu:Pnuc_1182 ABC transporter related YP_002015324.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bra:BRADO5373 ABC transporter (permease protein) YP_002015325.1 KEGG: yen:YE1553 metallothionein SmtA YP_002015326.1 TIGRFAM: DNA binding domain protein, excisionase family; KEGG: chu:CHU_1463 excisionase YP_002015327.1 KEGG: gdi:GDI3857 cobyrinic acid a,c-diamide synthase YP_002015328.1 KEGG: gdi:GDI3856 hypothetical protein YP_002015330.1 KEGG: gdi:GDI2866 conjugal transfer protein TraF YP_002015331.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: plu:plu1111 hypothetical protein YP_002015333.1 KEGG: pla:Plav_1821 hypothetical protein YP_002015335.1 KEGG: ckl:CKL_2201 hypothetical protein YP_002015339.1 PFAM: AIR synthase related protein domain protein; KEGG: mtp:Mthe_1093 thiamine-monophosphate kinase YP_002015340.1 PFAM: deoxyUTP pyrophosphatase; KEGG: iho:Igni_0585 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002015341.1 KEGG: cph:Cpha266_1698 integrase, catalytic region YP_002015343.1 KEGG: plt:Plut_1855 conserved hypothetical transposase YP_002015344.1 PFAM: transposase IS3/IS911 family protein; KEGG: pvi:Cvib_0645 transposase YP_002015346.1 KEGG: pdi:BDI_2151 hypothetical protein YP_002015347.1 PFAM: Integrase catalytic region; KEGG: cph:Cpha266_1698 integrase, catalytic region YP_002015348.1 PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_1699 transposase IS3/IS911 family protein YP_002015349.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase YP_002015350.1 TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: lbl:LBL_0797 membrane alanyl aminopeptidase YP_002015351.1 PFAM: protein of unknown function DUF1648; KEGG: cte:CT1237 hypothetical protein YP_002015352.1 KEGG: cph:Cpha266_1345 hypothetical protein YP_002015353.1 KEGG: acr:Acry_2613 hypothetical protein YP_002015354.1 KEGG: cph:Cpha266_1364 hypothetical protein YP_002015355.1 similar to C33A12.3; KEGG: cel:C33A12.3 C33A12.3 YP_002015356.1 KEGG: ppd:Ppro_2573 hypothetical protein YP_002015357.1 KEGG: ppd:Ppro_2572 hypothetical protein YP_002015358.1 KEGG: pvi:Cvib_0714 hypothetical protein YP_002015359.1 KEGG: plt:Plut_1444 hypothetical protein YP_002015360.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ana:alr1722 probable oxidoreductase YP_002015361.1 KEGG: sil:SPO1999 hypothetical protein YP_002015362.1 KEGG: ppd:Ppro_0186 helicase, RecD/TraA family; TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding class 1; AAA ATPase YP_002015363.1 KEGG: cph:Cpha266_1962 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein YP_002015364.1 PFAM: sodium/hydrogen exchanger; KEGG: lpc:LPC_0926 sodium/hydrogen antiporter YP_002015365.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: cph:Cpha266_1957 multi-sensor hybrid histidine kinase YP_002015366.1 PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: cph:Cpha266_1956 hypothetical protein YP_002015367.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002015368.1 KEGG: cph:Cpha266_1942 hypothetical protein YP_002015369.1 PFAM: alpha/beta hydrolase fold; KEGG: pvi:Cvib_0581 alpha/beta hydrolase fold YP_002015370.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cte:CT0525 hypothetical protein YP_002015371.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: cte:CT0527 excinuclease ABC, subunit A YP_002015372.1 KEGG: pvi:Cvib_0584 hypothetical protein YP_002015373.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002015374.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002015375.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: cph:Cpha266_1935 ExsB protein YP_002015376.1 PFAM: Abortive infection protein; KEGG: cph:Cpha266_1934 abortive infection protein YP_002015377.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002015378.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_1932 glycosyl transferase, family 2 YP_002015379.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: cph:Cpha266_1931 NAD-dependent epimerase/dehydratase YP_002015380.1 PFAM: cyclase/dehydrase; KEGG: plt:Plut_0548 hypothetical protein YP_002015381.1 PFAM: cyclase/dehydrase; KEGG: cph:Cpha266_1930 cyclase/dehydrase YP_002015382.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB11273 bicyclomycin resistance protein YP_002015383.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP YP_002015384.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_0799 glycosyl transferase, group 1 YP_002015385.1 KEGG: cph:Cpha266_0800 cell shape determining protein, MreB/Mrl family; TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; SMART: actin/actin family protein YP_002015387.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002015388.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: cph:Cpha266_0802 queuosine biosynthesis protein YP_002015389.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_002015390.1 KEGG: plt:Plut_0557 hypothetical protein YP_002015392.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002015393.1 PFAM: Peptidase M23; KEGG: cph:Cpha266_0808 peptidase M23B YP_002015394.1 KEGG: cte:CT0559 hypothetical protein YP_002015395.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002015396.1 KEGG: plt:Plut_0565 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein YP_002015397.1 PFAM: protein of unknown function DUF368; KEGG: pdi:BDI_1390 hypothetical protein YP_002015398.1 PFAM: SNARE associated Golgi protein; KEGG: cph:Cpha266_0812 DedA family protein YP_002015399.1 PvlArgDC; converts arginine to agmatine and carbon dioxide; has a role in polyamine metabolism; in Methanococcus jannaschii this enzyme self-cleaves at serine-serine bond to form alpha (N-terminal) and beta (C-terminal) subunits; the alpha subunit contains a catalytically active pyruvoyl group; the beta subunit contains the substrate-binding residues; forms homotrimers of the alpha/beta complex YP_002015400.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002015401.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002015402.1 PFAM: FAD linked oxidase domain protein; KEGG: cph:Cpha266_0816 FAD linked oxidase domain protein YP_002015403.1 KEGG: cph:Cpha266_0817 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_002015404.1 TIGRFAM: rod shape-determining protein MreD; KEGG: cte:CT0567 hypothetical protein YP_002015405.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002015406.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mxa:MXAN_3382 cation efflux family protein YP_002015407.1 PFAM: chaperonin Cpn10; KEGG: pvi:Cvib_1202 chaperonin Cpn10 YP_002015408.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002015410.1 Catalyzes the rate-limiting step in dNTP synthesis YP_002015411.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_0578 ATPase YP_002015412.1 KEGG: cph:Cpha266_1780 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_002015413.1 KEGG: pvi:Cvib_1196 hypothetical protein YP_002015414.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: cch:Cag_1115 3-deoxy-D-manno-octulosonic-acid transferase YP_002015415.1 KEGG: har:HEAR0940 conserved hypothetical protein; signal peptide YP_002015416.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cte:CT0597 ATP-dependent RNA helicase DeaD YP_002015417.1 KEGG: net:Neut_0977 hypothetical protein YP_002015418.1 KEGG: cph:Cpha266_1771 hypothetical protein YP_002015419.1 KEGG: cph:Cpha266_1773 hypothetical protein YP_002015420.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cph:Cpha266_1772 beta-lactamase domain protein YP_002015421.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cph:Cpha266_1769 tyrosine recombinase XerD YP_002015422.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cph:Cpha266_1768 sun protein YP_002015423.1 KEGG: plt:Plut_0592 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_002015424.1 KEGG: cte:CT0605 homoserine O-acetyltransferase; TIGRFAM: homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold YP_002015425.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002015426.1 KEGG: cte:CT0607 hypothetical protein YP_002015427.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pvi:Cvib_1180 short-chain dehydrogenase/reductase SDR YP_002015428.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cte:CT0610 cold shock-like protein CspG YP_002015429.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002015430.1 KEGG: cph:Cpha266_0846 alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain YP_002015431.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: cph:Cpha266_0847 3-isopropylmalate dehydratase, small subunit YP_002015432.1 KEGG: cph:Cpha266_0848 homoaconitate hydratase family protein; TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein YP_002015433.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002015434.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002015435.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002015436.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002015437.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cph:Cpha266_0853 acetolactate synthase, large subunit YP_002015438.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002015440.1 PFAM: phosphatidate cytidylyltransferase; protein of unknown function DUF92 transmembrane; KEGG: cph:Cpha266_0855 protein of unknown function DUF92, transmembrane YP_002015441.1 TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: cph:Cpha266_0856 MotA/TolQ/ExbB proton channel YP_002015442.1 TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: plt:Plut_0612 ExbD/TolR family protein YP_002015443.1 KEGG: cph:Cpha266_0858 transcriptional regulator, Fis family YP_002015444.1 PFAM: WD40 domain protein beta Propeller; KEGG: pvi:Cvib_1164 WD40 domain protein beta propeller YP_002015445.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: cph:Cpha266_0860 OmpA/MotB domain protein YP_002015446.1 TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: plt:Plut_0616 peptidoglycan-associated lipoprotein YP_002015447.1 TIGRFAM: tol-pal system protein YbgF; KEGG: cph:Cpha266_0862 membrane lipoprotein lipid attachment site YP_002015448.1 KEGG: cch:Cag_1894 photosystem P840 reaction center protein PscD YP_002015449.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002015450.1 PFAM: heat shock protein Hsp20; KEGG: plt:Plut_0622 heat shock protein, HSP20 family YP_002015451.1 PFAM: regulatory protein ArsR; KEGG: pvi:Cvib_1156 transcriptional regulator, ArsR family YP_002015452.1 KEGG: pvi:Cvib_1155 transmembrane anti-sigma factor YP_002015453.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_002015454.1 PFAM: FAD dependent oxidoreductase; KEGG: cph:Cpha266_0874 amine oxidase YP_002015455.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: cph:Cpha266_0875 L-alanine dehydrogenase YP_002015456.1 KEGG: sru:SRU_0484 succinate dehydrogenase iron-sulfur subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin YP_002015457.1 PFAM: ferredoxin; KEGG: cte:CT0651 chlorosome envelope protein J YP_002015459.1 PFAM: ferredoxin; KEGG: cph:Cpha266_0877 ferredoxin YP_002015460.1 KEGG: cte:CT0653 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_002015461.1 KEGG: pvi:Cvib_1148 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase YP_002015463.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: plt:Plut_0632 two component transcriptional regulator, winged helix family YP_002015464.1 KEGG: plt:Plut_0633 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_002015465.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pvi:Cvib_1145 MscS mechanosensitive ion channel YP_002015466.1 KEGG: cph:Cpha266_1733 ferredoxin YP_002015467.1 PFAM: beta-lactamase domain protein; KEGG: mma:MM_1086 metal dependent hydrolase YP_002015468.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0883 NUDIX hydrolase YP_002015469.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cch:Cag_1602 bacterioferritin comigratory protein, thiol peroxidase YP_002015470.1 PFAM: protein of unknown function DUF179; KEGG: cte:CT0663 transcriptional regulator YP_002015473.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: cph:Cpha266_2176 death-on-curing family protein YP_002015474.1 TIGRFAM: addiction module antidote; PFAM: SpoVT/AbrB domain protein; KEGG: cph:Cpha266_2175 transcriptional regulator/antitoxin, MazE YP_002015475.1 PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: vha:VIBHAR_06128 hypothetical protein YP_002015476.1 TIGRFAM: outer membrane adhesin like proteiin; KEGG: cph:Cpha266_1846 outer membrane adhesin like proteiin YP_002015477.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1845 type I secretion outer membrane protein, TolC family YP_002015478.1 KEGG: eba:ebA1807 ABC transporter, ATP-binding/permease; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_002015479.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_0301 type I secretion membrane fusion protein, HlyD YP_002015480.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_0513 NUDIX hydrolase YP_002015481.1 PFAM: protein of unknown function DUF45; KEGG: cph:Cpha266_0904 protein of unknown function DUF45 YP_002015482.1 KEGG: cch:Cag_0581 hypothetical protein YP_002015483.1 KEGG: cte:CT0707 hypothetical protein YP_002015484.1 PFAM: outer membrane efflux protein; KEGG: afw:Anae109_4142 outer membrane efflux protein YP_002015485.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_0670 transporter, AcrB/D/F family YP_002015486.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_0671 secretion protein HlyD YP_002015487.1 PFAM: regulatory protein TetR; KEGG: dol:Dole_2892 transcriptional regulator, TetR family YP_002015488.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: maq:Maqu_3521 multi antimicrobial extrusion protein MatE YP_002015489.1 TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rca:Rcas_2535 zeta-phytoene desaturase YP_002015490.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pla:Plav_0452 MscS mechanosensitive ion channel YP_002015491.1 KEGG: plt:Plut_0666 hypothetical protein YP_002015492.1 KEGG: cph:Cpha266_0912 hypothetical protein YP_002015493.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pvi:Cvib_1365 GCN5-related N-acetyltransferase YP_002015494.1 TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: pvi:Cvib_1366 SSS sodium solute transporter superfamily YP_002015495.1 KEGG: pvi:Cvib_1367 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein YP_002015496.1 PFAM: regulatory protein MarR; KEGG: plt:Plut_1577 transcriptional regulator, MarR family YP_002015497.1 KEGG: cph:Cpha266_0915 hypothetical protein YP_002015499.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cte:CT0718 N-(5'-phosphoribosyl)-anthranilate isomerase YP_002015500.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_002015501.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002015502.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: pvi:Cvib_1120 nucleotidyl transferase YP_002015503.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_0707 NUDIX/MutT family protein YP_002015504.1 PFAM: regulatory protein MarR; KEGG: lbj:LBJ_0287 transcriptional regulator, MarR family YP_002015505.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: plt:Plut_0708 secretion protein HlyD YP_002015506.1 PFAM: acriflavin resistance protein; KEGG: plt:Plut_0709 RND family efflux transporter YP_002015507.1 PFAM: outer membrane efflux protein; KEGG: pvi:Cvib_1116 outer membrane efflux protein YP_002015508.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002015509.1 KEGG: cph:Cpha266_0926 hypothetical protein YP_002015510.1 KEGG: cte:CT0732 hypothetical protein YP_002015511.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_002015513.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002015514.1 KEGG: plt:Plut_0719 hypothetical protein YP_002015515.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: plt:Plut_0720 preprotein translocase subunit SecG YP_002015516.1 KEGG: sde:Sde_1284 hypothetical protein YP_002015517.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cph:Cpha266_0940 permease YjgP/YjgQ family protein YP_002015518.1 PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0621 cytosolic long-chain acyl-CoA thioester hydrolase family protein YP_002015519.1 PFAM: protein of unknown function DUF814; KEGG: cte:CT0745 fibronectin-binding protein YP_002015520.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cte:CT0746 deoxycytidylate deaminase YP_002015521.1 KEGG: cte:CT0747 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein YP_002015522.1 PFAM: DoxX family protein; KEGG: cte:CT0748 hypothetical protein YP_002015523.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_002015524.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002015525.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT0757 ATPase, AAA family YP_002015526.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0954 outer membrane efflux protein YP_002015527.1 PFAM: UspA domain protein; KEGG: lpf:lpl2306 hypothetical protein YP_002015528.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: csa:Csal_1095 sodium/hydrogen exchanger YP_002015529.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0759 hypothetical protein YP_002015530.1 PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0956 histidine triad (HIT) protein YP_002015531.1 KEGG: cph:Cpha266_0957 hypothetical protein YP_002015532.1 PFAM: ferrochelatase; KEGG: pvi:Cvib_1096 ferrochelatase YP_002015533.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0959 TPR repeat-containing protein YP_002015535.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: plt:Plut_0743 NADH dehydrogenase I, subunit 3 YP_002015536.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002015537.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: cch:Cag_0636 NADH (or F420H2) dehydrogenase, subunit C YP_002015538.1 PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; KEGG: pvi:Cvib_1090 NADH dehydrogenase (ubiquinone) YP_002015539.1 PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: plt:Plut_0747 NADH dehydrogenase I chain H YP_002015540.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cch:Cag_0639 NADH dehydrogenase I, 23 kDa subunit YP_002015541.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: cph:Cpha266_0967 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_002015542.1 PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cph:Cpha266_0968 NADH-ubiquinone oxidoreductase, chain 4L YP_002015543.1 KEGG: cte:CT0774 NADH dehydrogenase I subunit 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_002015544.1 KEGG: pvi:Cvib_1084 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_002015545.1 KEGG: cph:Cpha266_0971 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_002015546.1 KEGG: cph:Cpha266_0972 hydrogenase (NiFe) small subunit HydA; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein YP_002015547.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cph:Cpha266_0973 nickel-dependent hydrogenase, large subunit YP_002015548.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: plt:Plut_1448 nickel-dependent hydrogenase b-type cytochrome subunit YP_002015549.1 KEGG: mar:MAE_26830 hypothetical protein YP_002015550.1 TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: plt:Plut_1449 peptidase M52, hydrogen uptake protein YP_002015551.1 PFAM: protein of unknown function UPF0118; KEGG: xcb:XC_1326 permease YP_002015552.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002015553.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cph:Cpha266_0977 6-pyruvoyl tetrahydropterin synthase and hypothetical protein YP_002015554.1 PFAM: Thioredoxin domain; KEGG: pvi:Cvib_1080 thioredoxin YP_002015555.1 KEGG: plt:Plut_0314 hypothetical protein YP_002015556.1 KEGG: cch:Cag_0884 Fibrobacter succinogenes major paralogous domain YP_002015558.1 KEGG: cte:CT0352 hypothetical protein YP_002015559.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cph:Cpha266_2059 glyoxalase/bleomycin resistance protein/dioxygenase YP_002015560.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1144 HAD-superfamily hydrolase, subfamily IA, variant 1 YP_002015562.1 KEGG: cch:Cag_0884 Fibrobacter succinogenes major paralogous domain YP_002015563.1 PFAM: peptidase S14 ClpP; protein of unknown function DUF107; KEGG: cph:Cpha266_1160 nodulation efficiency protein NfeD YP_002015564.1 PFAM: band 7 protein; KEGG: plt:Plut_1305 band 7 protein YP_002015565.1 PFAM: UspA domain protein; KEGG: plt:Plut_1294 universal stress protein family YP_002015566.1 KEGG: cph:Cpha266_1163 arginine/ornithine transport system ATPase; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase YP_002015567.1 KEGG: plt:Plut_1292 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein YP_002015568.1 KEGG: cph:Cpha266_1166 acetyl-CoA carboxylase alpha subunit-like YP_002015569.1 TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cch:Cag_1126 hypothetical protein YP_002015570.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_1168 AMP-dependent synthetase and ligase YP_002015571.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002015572.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: cte:CT0804 transketolase, C-terminal subunit YP_002015573.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1171 conserved hypothetical protein 103 YP_002015574.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002015575.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_1173 zeta-carotene desaturase YP_002015576.1 KEGG: lpc:LPC_2168 hypothetical protein YP_002015577.1 SMART: Tetratricopeptide domain protein; KEGG: ang:An03g03030 hypothetical protein Pfam: PNP_UDP_1 NB-ARC Pox_A32 AAA TPR_2 TPR_1 PROSITE: NLS_BP YP_002015578.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002015579.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002015580.1 TIGRFAM: F0F1-ATPase subunit; PFAM: F0F1-ATPase subunit KEGG: plt:Plut_1065 F0F1-ATPase subunit YP_002015581.1 TIGRFAM: F1/F0 ATPase, Methanosarcina type, subunit 2; KEGG: rfr:Rfer_1164 hypothetical protein YP_002015582.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002015583.1 TIGRFAM: ATP synthase F0, C subunit; alternate F1F0 ATPase, F0 subunit C; PFAM: H+transporting two-sector ATPase C subunit; KEGG: rfr:Rfer_1166 H+-transporting two-sector ATPase, C subunit YP_002015584.1 TIGRFAM: alternate F1F0 ATPase, F0 subunit B; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: mac:MA2435 H(+)-transporting ATP synthase, subunit B YP_002015585.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002015586.1 TIGRFAM: alternate F1F0 ATPase, F1 subunit gamma; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: rfr:Rfer_1169 H+-transporting two-sector ATPase, gamma subunit YP_002015587.1 KEGG: cte:CT1429 hypothetical protein YP_002015588.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_002015589.1 PFAM: aldo/keto reductase; KEGG: cph:Cpha266_1920 aldo/keto reductase YP_002015590.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: plt:Plut_0667 sulphate anion transporter YP_002015591.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; KEGG: cch:Cag_0946 peptide chain release factor 3 YP_002015592.1 catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate YP_002015593.1 PFAM: Inorganic pyrophosphatase; KEGG: pvi:Cvib_1028 inorganic diphosphatase YP_002015594.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: fps:FP1606 fumarate hydratase YP_002015595.1 PFAM: protein of unknown function DUF344; KEGG: rfr:Rfer_4046 protein of unknown function DUF344 YP_002015596.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002015597.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: pvi:Cvib_0808 anaerobic ribonucleoside-triphosphate reductase activating protein YP_002015598.1 TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: dsy:DSY1141 hypothetical protein YP_002015599.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: plt:Plut_1275 phosphatase KdsC YP_002015600.1 PFAM: N-acetylneuraminic acid synthase domain; KEGG: pvi:Cvib_1025 N-acetylneuraminate synthase YP_002015601.1 molecular chaperone YP_002015602.1 PFAM: protein of unknown function DUF125 transmembrane; KEGG: plt:Plut_1272 hypothetical protein YP_002015603.1 KEGG: cte:CT0831 hypothetical protein YP_002015604.1 PFAM: UspA domain protein; KEGG: plt:Plut_1270 universal stress protein family YP_002015605.1 TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; KEGG: plt:Plut_1268 sodium pump decarboxylase, gamma subunit YP_002015606.1 PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: plt:Plut_1267 oxaloacetate decarboxylase, alpha subunit YP_002015607.1 KEGG: plt:Plut_1266 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit YP_002015608.1 KEGG: cch:Cag_0892 internalin-related protein YP_002015609.1 PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: cte:CT0838 glycosyl hydrolase, family 65 YP_002015610.1 PFAM: glycosyl transferase group 1; KEGG: cte:CT0839 glycosyl transferase, group 1 family protein YP_002015611.1 KEGG: cph:Cpha266_1195 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein YP_002015612.1 TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: plt:Plut_1261 thioredoxin YP_002015613.1 KEGG: plt:Plut_1260 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002015614.1 PFAM: NUDIX hydrolase; KEGG: plt:Plut_1259 hypothetical protein YP_002015615.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: plt:Plut_1258 two component transcriptional regulator, fis family YP_002015617.1 KEGG: fjo:Fjoh_4930 hypothetical protein YP_002015618.1 KEGG: cph:Cpha266_1030 hypothetical protein YP_002015619.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cte:CT0879 tRNA methyltransferase SpoU YP_002015620.1 KEGG: bth:BT_4129 outer membrane assembly protein YP_002015621.1 KEGG: cte:CT0880 hypothetical protein YP_002015622.1 KEGG: cph:Cpha266_1201 hypothetical protein YP_002015623.1 KEGG: cph:Cpha266_1202 hypothetical protein YP_002015624.1 KEGG: gfo:GFO_0037 membrane protein containing adenylate/guanylate cyclase catalytic domain YP_002015625.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: chu:CHU_3753 hypothetical protein YP_002015626.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: gme:Gmet_1347 phosphoesterase, PA-phosphatase related YP_002015627.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pvi:Cvib_1004 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_002015628.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1251 methyltransferase YP_002015629.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: pvi:Cvib_1002 phospholipid/glycerol acyltransferase YP_002015630.1 KEGG: pvi:Cvib_1001 hypothetical protein YP_002015631.1 KEGG: pvi:Cvib_1000 hypothetical protein YP_002015632.1 KEGG: pvi:Cvib_0104 hypothetical protein YP_002015633.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pvi:Cvib_0998 phosphate binding protein YP_002015634.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pvi:Cvib_0996 phosphate ABC transporter, inner membrane subunit PstC YP_002015635.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pvi:Cvib_0995 phosphate ABC transporter, inner membrane subunit PstA YP_002015636.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002015637.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: plt:Plut_1241 PhoU YP_002015638.1 PFAM: PhoU family protein; KEGG: cte:CT0903 transcriptional regulator YP_002015639.1 KEGG: cph:Cpha266_1046 hypothetical protein YP_002015640.1 KEGG: plt:Plut_1238 hypothetical protein YP_002015641.1 PFAM: pentapeptide repeat protein; KEGG: plt:Plut_1237 pentapeptide repeat family protein YP_002015642.1 PFAM: glycosyl transferase family 2; KEGG: pvi:Cvib_0988 glycosyl transferase, family 2 YP_002015643.1 KEGG: pvi:Cvib_1218 hypothetical protein YP_002015644.1 PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: plt:Plut_1235 oxidoreductase, FAD-binding YP_002015646.1 PFAM: Radical SAM domain protein; KEGG: dol:Dole_0890 radical SAM domain protein YP_002015647.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002015648.1 PFAM: helix-hairpin-helix motif; PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding class 1; KEGG: rxy:Rxyl_0486 PHP-like protein YP_002015649.1 KEGG: cph:Cpha266_1061 hypothetical protein YP_002015650.1 PFAM: protein of unknown function DUF1648; KEGG: cte:CT1237 hypothetical protein YP_002015651.1 KEGG: hch:HCH_04190 hypothetical protein YP_002015653.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ana:alr3535 acetyltransferase YP_002015656.1 KEGG: fal:FRAAL6351 regulator YP_002015658.1 KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein YP_002015659.1 PFAM: HpcH/HpaI aldolase; KEGG: cph:Cpha266_2198 HpcH/HpaI aldolase YP_002015661.1 KEGG: mrd:Mrad2831_5669 hypothetical protein YP_002015666.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: plt:Plut_0947 ATPase, E1-E2 type YP_002015667.1 PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1569 UbiA prenyltransferase YP_002015668.1 KEGG: cph:Cpha266_2705 hypothetical protein YP_002015670.1 KEGG: sse:Ssed_2999 hypothetical protein YP_002015671.1 PFAM: methyltransferase; KEGG: cph:Cpha266_1584 methyltransferase YP_002015672.1 metalloprotease YP_002015673.1 KEGG: cph:Cpha266_1576 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_002015674.1 PFAM: zinc finger SWIM domain protein; KEGG: cch:Cag_1179 hypothetical protein YP_002015675.1 KEGG: cch:Cag_0159 hypothetical protein YP_002015676.1 PFAM: Abortive infection protein; KEGG: tcx:Tcr_1073 abortive infection protein YP_002015677.1 PFAM: protein of unknown function DUF296; KEGG: plt:Plut_1663 DNA-binding proteins with PD1-like DNA-binding motif YP_002015678.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plt:Plut_1144 alcohol dehydrogenase, zinc-containing YP_002015679.1 KEGG: plt:Plut_1143 anthranilate phosphoribosyl transferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like YP_002015680.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: cph:Cpha266_1353 cytochrome-c peroxidase YP_002015681.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: cph:Cpha266_1264 carbohydrate kinase, YjeF related protein YP_002015682.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002015683.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_002015684.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cph:Cpha266_1538 phosphoesterase, RecJ domain protein YP_002015685.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002015686.1 KEGG: cph:Cpha266_1536 hypothetical protein YP_002015687.1 KEGG: cph:Cpha266_1535 hypothetical protein YP_002015688.1 PFAM: sodium:dicarboxylate symporter; KEGG: noc:Noc_1770 sodium/dicarboxylate symporter YP_002015689.1 KEGG: plt:Plut_0956 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase YP_002015690.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: cph:Cpha266_1533 phosphomethylpyrimidine kinase YP_002015691.1 KEGG: cte:CT1175 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_002015692.1 PFAM: thiamine monophosphate synthase; KEGG: cph:Cpha266_1531 thiamine monophosphate synthase YP_002015693.1 in Methanocaldococcus jannaschii this enzyme is involved in conversion of 5-phospho-D-ribose-1-pyrophosphate to ribulose-1,5-bisphosphate using NAD as a cofactor; part of RubisCO pathway YP_002015694.1 PFAM: Endoribonuclease L-PSP; KEGG: cph:Cpha266_1530 endoribonuclease L-PSP YP_002015695.1 PFAM: protein of unknown function DUF192; KEGG: rxy:Rxyl_2570 protein of unknown function DUF192 YP_002015696.1 KEGG: cph:Cpha266_1529 C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_002015697.1 PFAM: cyclase/dehydrase; KEGG: pvi:Cvib_0939 cyclase/dehydrase YP_002015698.1 KEGG: cph:Cpha266_1527 hypothetical protein YP_002015699.1 TIGRFAM: rfaE bifunctional protein; PFAM: PfkB domain protein; KEGG: cph:Cpha266_1526 RfaE bifunctional protein YP_002015700.1 KEGG: cph:Cpha266_1525 signal recognition particle subunit FFH/SRP54 (SRP54); TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_002015701.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002015702.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: cte:CT1165 16S rRNA processing protein RimM YP_002015703.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002015704.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002015705.1 PFAM: beta-lactamase domain protein; KEGG: plt:Plut_0970 metal-dependent hydrolase YP_002015706.1 PFAM: HhH-GPD family protein; KEGG: cph:Cpha266_1520 HhH-GPD family protein YP_002015707.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_1519 AMP-dependent synthetase and ligase YP_002015708.1 KEGG: cte:CT1155 hypothetical protein YP_002015709.1 KEGG: cte:CT1154 hypothetical protein YP_002015710.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cte:CT1153 acylneuraminate cytidylyltransferase YP_002015711.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cph:Cpha266_1513 iron-containing alcohol dehydrogenase YP_002015712.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: plt:Plut_0977 DegT/DnrJ/EryC1/StrS family protein YP_002015714.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: lip:LIA029 chromosome-partitioning ATPase YP_002015715.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cph:Cpha266_1342 cobyrinic acid a,c-diamide synthase YP_002015716.1 PFAM: CHAD domain containing protein; KEGG: cph:Cpha266_1341 CHAD domain containing protein YP_002015717.1 PFAM: basic membrane lipoprotein; KEGG: cph:Cpha266_1340 basic membrane lipoprotein YP_002015718.1 KEGG: mbr:MONBRDRAFT_13965 hypothetical protein YP_002015719.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cph:Cpha266_1339 NAD-dependent epimerase/dehydratase YP_002015720.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294 nucleotidyltransferase KEGG: pvi:Cvib_0904 cyclic nucleotide-binding protein YP_002015721.1 KEGG: plt:Plut_1010 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_002015722.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: plt:Plut_1011 methyltransferase YP_002015723.1 KEGG: cph:Cpha266_1337 hypothetical protein YP_002015724.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002015725.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cph:Cpha266_1335 fumarylacetoacetate (FAA) hydrolase YP_002015726.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cph:Cpha266_1334 5-formyltetrahydrofolate cyclo-ligase YP_002015727.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002015728.1 KEGG: cph:Cpha266_1332 ribose-5-phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase YP_002015729.1 PFAM: CBS domain containing protein; KEGG: plt:Plut_1018 hypothetical protein YP_002015730.1 KEGG: cte:CT1052 peptidase, M20/M25/M40 family; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002015731.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002015732.1 KEGG: cph:Cpha266_1304 C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_002015733.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002015734.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cte:CT0920 7-alpha-hydroxysteroid dehydrogenase YP_002015735.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sfr:Sfri_0790 sulphate transporter YP_002015736.1 PFAM: UspA domain protein; KEGG: shw:Sputw3181_0409 UspA domain protein YP_002015737.1 PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: pvi:Cvib_0120 exonuclease, RNase T and DNA polymerase III YP_002015738.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cph:Cpha266_2588 AMP-dependent synthetase and ligase YP_002015740.1 PFAM: helicase domain protein; KEGG: hch:HCH_05715 hypothetical protein YP_002015741.1 KEGG: hch:HCH_05713 hypothetical protein YP_002015742.1 KEGG: hch:HCH_05712 superfamily I DNA and RNA helicase YP_002015744.1 PFAM: NERD domain protein; KEGG: aoe:Clos_2030 NERD domain protein YP_002015745.1 KEGG: cch:Cag_0835 hypothetical protein YP_002015746.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cch:Cag_1183 hypothetical protein YP_002015747.1 PFAM: protein of unknown function DUF403; KEGG: cph:Cpha266_1743 protein of unknown function DUF403 YP_002015748.1 PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: cch:Cag_1185 transglutaminase-like YP_002015750.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002015751.1 KEGG: plt:Plut_0470 hypothetical protein YP_002015752.1 PFAM: fructose-bisphosphate aldolase class-I; KEGG: tbd:Tbd_1513 fructose-bisphosphate aldolase YP_002015753.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002015754.1 PFAM: arginine repressor; KEGG: cph:Cpha266_1324 transcriptional regulator, ArgR family YP_002015755.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002015756.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002015757.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002015758.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002015759.1 KEGG: cph:Cpha266_1319 phosphate-binding protein YP_002015760.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pvi:Cvib_0875 diguanylate cyclase YP_002015761.1 PFAM: protein of unknown function DUF214; KEGG: cte:CT1103 conserved hypothetical protein YP_002015762.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1316 protein of unknown function DUF214 YP_002015763.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: plt:Plut_1978 rubredoxin-like YP_002015764.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cph:Cpha266_1314 GCN5-related N-acetyltransferase YP_002015765.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: cph:Cpha266_1313 lipocalin family protein YP_002015766.1 PFAM: protein of unknown function UPF0016; KEGG: cph:Cpha266_1312 protein of unknown function UPF0016 YP_002015767.1 KEGG: cte:CT1094 hypothetical protein YP_002015768.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1057 ATPase YP_002015769.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1309 conserved hypothetical protein 245 YP_002015770.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002015771.1 PFAM: ATP-grasp domain protein; KEGG: cph:Cpha266_1307 ATP citrate lyase subunit 1 YP_002015772.1 PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: cte:CT1088 citrate lyase, subunit 2 YP_002015773.1 KEGG: pen:PSEEN2572 hypothetical protein YP_002015774.1 PFAM: Resolvase domain; KEGG: plt:Plut_0854 invertase/recombinase like protein YP_002015777.1 KEGG: rpb:RPB_0074 hypothetical protein YP_002015778.1 KEGG: rpb:RPB_0073 hypothetical protein YP_002015779.1 PFAM: transposase IS3/IS911 family protein; KEGG: pvi:Cvib_0645 transposase YP_002015780.1 KEGG: plt:Plut_1855 conserved hypothetical transposase YP_002015782.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: plt:Plut_1820 RNA-directed DNA polymerase YP_002015783.1 KEGG: cph:Cpha266_1698 integrase, catalytic region YP_002015784.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: hit:NTHI0142 transposon Tn3 resolvase YP_002015785.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: TIR protein; Tetratricopeptide domain protein; KEGG: mba:Mbar_A3708 hypothetical protein YP_002015786.1 PFAM: ABC-2 type transporter; KEGG: plt:Plut_1078 ABC transport system, membrane protein YP_002015787.1 PFAM: ABC-2 type transporter; KEGG: pvi:Cvib_0862 ABC-2 type transporter YP_002015788.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1080 ATPase YP_002015789.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0860 ABC transporter related YP_002015790.1 KEGG: pvi:Cvib_0859 ABC transport system, lipoprotein YP_002015791.1 PFAM: cell shape determining protein MreB/Mrl; KEGG: plt:Plut_0553 cell shape determining protein MreB/Mrl YP_002015792.1 KEGG: gfo:GFO_1339 membrane protein YP_002015793.1 PFAM: cell wall hydrolase SleB; KEGG: pla:Plav_0730 cell wall hydrolase SleB YP_002015794.1 KEGG: fph:Fphi_0778 hypothetical protein YP_002015795.1 PFAM: regulatory protein ArsR; KEGG: cch:Cag_0425 transcriptional regulator, ArsR family YP_002015796.1 TIGRFAM: redox-active disulfide protein 2; KEGG: cch:Cag_0399 redox-active disulfide protein 2 YP_002015797.1 PFAM: permease; KEGG: cte:CT1726 hypothetical protein YP_002015798.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cte:CT1725 arsenate reductase YP_002015799.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cph:Cpha266_0466 arsenical-resistance protein YP_002015800.1 KEGG: cph:Cpha266_0798 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002015802.1 KEGG: cph:Cpha266_1270 hypothetical protein YP_002015803.1 PFAM: cytochrome c class I; KEGG: cph:Cpha266_1269 cytochrome c, class I YP_002015804.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002015805.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1491 TPR repeat YP_002015806.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1701 iron-sulfur cluster-binding protein YP_002015807.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plt:Plut_1672 hypothetical protein YP_002015809.1 PFAM: Radical SAM domain protein; KEGG: afu:AF2009 heme biosynthesis protein (NirJ-2) YP_002015810.1 KEGG: hch:HCH_06774 hypothetical protein YP_002015812.1 PFAM: Spore germination protein; amino acid permease-associated region; KEGG: plt:Plut_0803 amino acid transporter YP_002015813.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ilo:IL2542 small-conductance mechanosensitive channel YP_002015814.1 KEGG: noc:Noc_1913 hypothetical protein YP_002015815.1 PFAM: MscS Mechanosensitive ion channel; KEGG: syp:SYNPCC7002_A2163 small-conductance mechanosensitive channel YP_002015817.1 KEGG: cte:CT1653 hypothetical protein YP_002015818.1 PFAM: regulatory protein ArsR; KEGG: cte:CT1654 transcriptional regulator, ArsR family YP_002015819.1 PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: cph:Cpha266_0622 ABC transporter related YP_002015820.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cph:Cpha266_0621 efflux transporter, RND family, MFP subunit YP_002015821.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_0620 outer membrane efflux protein YP_002015822.1 KEGG: hha:Hhal_1133 hypothetical protein YP_002015823.1 KEGG: afw:Anae109_3976 hypothetical protein YP_002015824.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1471 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002015825.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002015826.1 KEGG: pvi:Cvib_0856 hypothetical protein YP_002015827.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: cch:Cag_1016 hypothetical protein YP_002015828.1 PFAM: zinc/iron permease; KEGG: dps:DP0096 GufA protein YP_002015829.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_0383 oxidoreductase, short-chain dehydrogenase/reductase family YP_002015830.1 PFAM: ferredoxin; KEGG: cph:Cpha266_1733 ferredoxin YP_002015832.1 TIGRFAM: yecA family protein; KEGG: cch:Cag_0098 YgfB and YecA YP_002015833.1 KEGG: cte:CT0060 hypothetical protein YP_002015834.1 PFAM: SMC domain protein; KEGG: sat:SYN_00200 exonuclease YP_002015835.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cph:Cpha266_1371 exodeoxyribonuclease I subunit D YP_002015836.1 PFAM: UvrD/REP helicase; KEGG: ppg:PputGB1_3118 UvrD/REP helicase YP_002015837.1 KEGG: ppg:PputGB1_3117 hypothetical protein YP_002015838.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_20371 hypothetical protein YP_002015839.1 KEGG: ote:Oter_0373 radical SAM domain protein YP_002015840.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cte:CT0996 8-oxoguanine DNA glycosylase YP_002015841.1 KEGG: plt:Plut_0952 hypothetical protein YP_002015842.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: cph:Cpha266_1539 radical SAM enzyme, Cfr family YP_002015843.1 KEGG: cph:Cpha266_1540 hypothetical protein YP_002015844.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002015845.1 KEGG: cte:CT1187 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases YP_002015846.1 PFAM: DoxX family protein; KEGG: cph:Cpha266_1543 DoxX family protein YP_002015847.1 KEGG: cph:Cpha266_0309 outer surface protein YP_002015848.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002015849.1 PFAM: protein of unknown function UPF0005; KEGG: spe:Spro_1325 protein of unknown function UPF0005 YP_002015850.1 heat shock protein involved in degradation of misfolded proteins YP_002015851.1 heat shock protein involved in degradation of misfolded proteins YP_002015852.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: cte:CT1193 RNA polymerase sigma-54 factor YP_002015853.1 KEGG: cte:CT1194 hypothetical protein YP_002015854.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002015855.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002015856.1 PFAM: membrane protein of unknown function; KEGG: cph:Cpha266_0995 membrane protein of unknown function YP_002015857.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: cte:CT1197 chlorobiumquinone synthase BchC related protein YP_002015858.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0993 ABC transporter related YP_002015859.1 PFAM: inner-membrane translocator; KEGG: plt:Plut_0921 membrane protein YP_002015860.1 PFAM: CBS domain containing protein; Chloride channel core; KEGG: plt:Plut_0919 chloride channel YP_002015861.1 KEGG: pvi:Cvib_0970 hypothetical protein YP_002015862.1 KEGG: pvi:Cvib_0971 hypothetical protein YP_002015863.1 PFAM: PASTA domain containing protein; KEGG: cph:Cpha266_0989 PASTA domain containing protein YP_002015864.1 PFAM: Polyprenyl synthetase; KEGG: cte:CT1206 polyprenyl synthetase YP_002015867.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: cph:Cpha266_0987 sec-independent protein translocase TatC YP_002015868.1 PFAM: esterase; KEGG: cte:CT1208 enterochelin esterase and related enzymes YP_002015869.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002015870.1 KEGG: pvi:Cvib_0977 hypothetical protein YP_002015871.1 PFAM: manganese and iron superoxide dismutase; KEGG: plt:Plut_1224 superoxide dismutase YP_002015872.1 KEGG: cph:Cpha266_0982 hypothetical protein YP_002015873.1 KEGG: cte:CT1213 hypothetical protein YP_002015874.1 KEGG: plt:Plut_1228 hypothetical protein YP_002015875.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cte:CT1215 thioredoxin YP_002015876.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1445 ATPase YP_002015877.1 PFAM: SufBD protein; KEGG: dvl:Dvul_1973 SufBD protein YP_002015878.1 KEGG: pvi:Cvib_0834 hypothetical protein YP_002015879.1 KEGG: cph:Cpha266_1551 hypothetical protein YP_002015880.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1552 uncharacterised conserved protein UCP025560 YP_002015881.1 KEGG: cte:CT1721 hypothetical protein YP_002015883.1 KEGG: cph:Cpha266_1560 hypothetical protein YP_002015884.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_1561 HI0933 family protein YP_002015885.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: cte:CT1221 HlyD family secretion protein YP_002015886.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1508 protein of unknown function DUF214 YP_002015887.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1509 ABC transporter related YP_002015888.1 KEGG: plt:Plut_0892 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002015889.1 PFAM: response regulator receiver; KEGG: plt:Plut_0891 response regulator receiver domain protein (CheY-like) YP_002015890.1 PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: mgm:Mmc1_1145 deoxyribodipyrimidine photo-lyase YP_002015891.1 PFAM: protein of unknown function DUF218; KEGG: cte:CT1146 hypothetical protein YP_002015892.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: pvi:Cvib_0527 NmrA family protein YP_002015894.1 PFAM: Protein of unknown function DUF1847; KEGG: cph:Cpha266_1986 hypothetical protein YP_002015896.1 KEGG: cph:Cpha266_1976 hypothetical protein YP_002015897.1 KEGG: cph:Cpha266_1680 Pep581 peptidase. Metallo peptidase. MEROPS family M20C; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_002015898.1 KEGG: cph:Cpha266_1681 hypothetical protein YP_002015899.1 KEGG: cph:Cpha266_1686 hypothetical protein YP_002015900.1 PFAM: N-acetyltransferase; KEGG: cph:Cpha266_1973 N-acetyltransferase YP_002015901.1 PFAM: response regulator receiver; KEGG: plt:Plut_1025 two component transcriptional regulator, winged helix family YP_002015902.1 KEGG: cte:CT0827 hypothetical protein YP_002015903.1 KEGG: cph:Cpha266_1026 hypothetical protein YP_002015904.1 PFAM: acid phosphatase (Class B); KEGG: cph:Cpha266_1069 acid phosphatase (class B) YP_002015905.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: cph:Cpha266_1679 3-beta hydroxysteroid dehydrogenase/isomerase YP_002015906.1 KEGG: hch:HCH_04190 hypothetical protein YP_002015907.1 KEGG: cph:Cpha266_0545 hypothetical protein YP_002015908.1 KEGG: cph:Cpha266_1274 hypothetical protein YP_002015909.1 PFAM: RNP-1 like RNA-binding protein; KEGG: cph:Cpha266_2673 RNP-1 like RNA-binding protein YP_002015910.1 KEGG: sat:SYN_00659 methyl-accepting chemotaxis protein YP_002015911.1 KEGG: eli:ELI_06985 hypothetical protein YP_002015912.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: sru:SRU_2392 mercuric reductase YP_002015913.1 PFAM: nuclear protein SET; KEGG: cte:CT0952 hypothetical protein YP_002015914.1 KEGG: plt:Plut_0990 hypothetical protein YP_002015915.1 KEGG: plt:Plut_0989 hypothetical protein YP_002015916.1 KEGG: cps:CPS_2960 hypothetical protein YP_002015917.1 KEGG: bld:BLi03623 hypothetical protein YP_002015918.1 KEGG: ppw:PputW619_2493 hypothetical protein YP_002015919.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cph:Cpha266_1004 iron-containing alcohol dehydrogenase YP_002015920.1 KEGG: xcb:XC_3113 hypothetical protein YP_002015921.1 PFAM: KWG Leptospira repeat protein; KEGG: cbh:CLC_1691 KWG leptospira repeat protein YP_002015922.1 PFAM: protein of unknown function DUF134; KEGG: cph:Cpha266_1003 protein of unknown function DUF134 YP_002015923.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pvi:Cvib_0825 C4-dicarboxylate transporter/malic acid transport protein YP_002015924.1 PFAM: OsmC family protein; KEGG: plt:Plut_1130 hypothetical protein YP_002015925.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cch:Cag_1057 cobalamin-5-phosphate synthase CobS YP_002015926.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT0947 hydrolase, alpha/beta hydrolase fold family YP_002015927.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole YP_002015928.1 PFAM: cobalbumin biosynthesis protein; KEGG: cch:Cag_0846 cobalamin biosynthesis protein CobP YP_002015929.1 KEGG: pvi:Cvib_0850 hypothetical protein YP_002015930.1 KEGG: plt:Plut_1100 hypothetical protein YP_002015931.1 KEGG: pvi:Cvib_0850 hypothetical protein YP_002015933.1 KEGG: plt:Plut_1104 hypothetical protein YP_002015934.1 KEGG: plt:Plut_1105 hypothetical protein YP_002015935.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cch:Cag_1076 hypothetical protein YP_002015936.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: cph:Cpha266_0947 ErfK/YbiS/YcfS/YnhG family protein YP_002015937.1 TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pca:Pcar_1356 NADPH:quinone reductase/Zn-dependent oxidoreductase YP_002015938.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1135 ATPase YP_002015939.1 PFAM: transport system permease protein; KEGG: pvi:Cvib_0818 transport system permease protein YP_002015940.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group YP_002015941.1 TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: cph:Cpha266_1118 L-threonine O-3-phosphate decarboxylase YP_002015942.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation YP_002015943.1 KEGG: cph:Cpha266_1116 cob(II)yrinic acid a,c-diamide reductase; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase YP_002015944.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pvi:Cvib_0812 TonB-dependent receptor YP_002015945.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002015946.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cte:CT0423 receptor YP_002015947.1 PFAM: CobN/magnesium chelatase; KEGG: cte:CT0422 CobN protein YP_002015948.1 KEGG: cte:CT0421 magnesium-chelatase, subunit I family; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_002015949.1 PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; KEGG: cte:CT0420 magnesium-chelatase, subunit D/I family YP_002015950.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ppd:Ppro_1260 TonB-dependent receptor YP_002015951.1 PFAM: CobN/magnesium chelatase; KEGG: cte:CT0418 cobalamin biosynthesis protein CobN YP_002015952.1 PFAM: Radical SAM domain protein; KEGG: cte:CT0417 AslB/AtsB family protein YP_002015953.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cte:CT0416 hypothetical protein YP_002015954.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: eba:ebA2117 hemin receptor precursor, TonB-dependent outer membrane uptake protein YP_002015955.1 PFAM: transport system permease protein; KEGG: cph:Cpha266_0445 transport system permease protein YP_002015956.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0446 ABC transporter related YP_002015957.1 PFAM: periplasmic binding protein; KEGG: cph:Cpha266_0448 periplasmic binding protein YP_002015958.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: cte:CT0384 precorrin-6X reductase/cobalamin biosynthesis protein CbiD YP_002015959.1 PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: cte:CT0384 precorrin-6X reductase/cobalamin biosynthesis protein CbiD YP_002015960.1 KEGG: cte:CT0385 precorrin-4 C11-methyltransferase/cobalamin biosynthesis protein; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein YP_002015961.1 KEGG: cte:CT0386 precorrin-6y C5,15-methyltransferase, decarboxylating; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase YP_002015962.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Precorrin-8X methylmutase CbiC/CobH; KEGG: cte:CT0387 precorrin-3B C17-methyltransferase/precorrin-8X methylmutase YP_002015963.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0388 precorrin-2 C20-methyltransferase YP_002015964.1 PFAM: anaerobic cobalt chelatase; KEGG: cte:CT0389 cobalt chelatase CbiK YP_002015965.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cte:CT0390 uroporphyrin-III C-methyltransferase YP_002015966.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT0415 carbon-nitrogen hydrolase family protein YP_002015967.1 PFAM: protein of unknown function DUF105; KEGG: cte:CT0414 hypothetical protein YP_002015968.1 KEGG: cte:CT0413 iron complex transport system substrate-binding protein YP_002015969.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT0412 iron(III) ABC transporter, ATP-binding protein YP_002015970.1 PFAM: transport system permease protein; KEGG: cte:CT0411 iron(III) ABC transporter, permease protein YP_002015971.1 PFAM: periplasmic binding protein; KEGG: cte:CT0410 iron(III) ABC transporter, periplasmic iron-binding protein YP_002015972.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT0409 ferredoxin, 4Fe-4S YP_002015973.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_2970 TonB-dependent receptor protein YP_002015974.1 KEGG: plt:Plut_1147 hypothetical protein YP_002015975.1 PFAM: NUDIX hydrolase; KEGG: cte:CT0931 NUDIX/MutT family protein YP_002015976.1 PFAM: periplasmic binding protein; KEGG: cph:Cpha266_1112 periplasmic binding protein YP_002015977.1 PFAM: major facilitator superfamily MFS_1; KEGG: cph:Cpha266_1111 major facilitator superfamily MFS_1 YP_002015978.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cte:CT0990 polyA polymerase family protein YP_002015979.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002015980.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: pvi:Cvib_0799 hypothetical protein YP_002015981.1 involved in the electron transport chain; in Methanosarcina acetivorans this protein is part of a cluster involved in electron transfer during growth on acetate YP_002015982.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: pvi:Cvib_0797 electron transport complex, RnfABCDGE type, C subunit YP_002015983.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: pvi:Cvib_0796 electron transport complex, RnfABCDGE type, D subunit YP_002015984.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: pvi:Cvib_0795 electron transport complex, RnfABCDGE type, G subunit YP_002015985.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase YP_002015986.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: pvi:Cvib_0793 electron transport complex, RnfABCDGE type, A subunit YP_002015987.1 PFAM: amino acid permease-associated region; KEGG: mbu:Mbur_0069 amino acid transporter YP_002015988.1 KEGG: rpb:RPB_1461 hypothetical protein YP_002015990.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein YP_002015991.1 PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_2246 protein of unknown function DUF1568 YP_002015992.1 PFAM: zinc/iron permease; KEGG: sat:SYN_02130 zinc transporter ZupT YP_002015993.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_2259 protein of unknown function DUF323 YP_002015994.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2260 AAA ATPase, central domain protein YP_002015995.1 KEGG: cph:Cpha266_2261 DnaK like protein YP_002015996.1 KEGG: ana:all4144 hypothetical protein YP_002015997.1 KEGG: cph:Cpha266_2262 hypothetical protein YP_002015998.1 KEGG: mae:Maeo_0094 NADPH-dependent FMN reductase YP_002015999.1 PFAM: glucose sorbosone dehydrogenase; KEGG: pin:Ping_0307 glucose sorbosone dehydrogenase YP_002016001.1 KEGG: oan:Oant_4528 transposase IS3/IS911 family protein YP_002016002.1 KEGG: sus:Acid_2974 hypothetical protein YP_002016003.1 PFAM: phosphofructokinase; SMART: TIR protein; KEGG: dde:Dde_1589 diphosphate--fructose-6-phosphate 1-phosphotransferase YP_002016004.1 KEGG: cph:Cpha266_1487 protein of unknown function DUF1568 YP_002016005.1 KEGG: mvn:Mevan_1423 4Fe-4S ferredoxin iron-sulfur binding domain protein YP_002016006.1 KEGG: pdi:BDI_2152 conserved hypothetical protein, ATPase involved in DNA repair YP_002016007.1 PFAM: ApbE family lipoprotein; KEGG: pvi:Cvib_0792 ApbE family lipoprotein YP_002016008.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002016009.1 KEGG: plt:Plut_1162 anti-sigma regulatory factor (serine/threonine protein kinase) YP_002016010.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: plt:Plut_1163 ammonium transporter YP_002016011.1 PFAM: nitrogen regulatory protein P-II; KEGG: plt:Plut_1164 nitrogen regulatory protein P-II (GlnB, GlnK) YP_002016012.1 KEGG: pvi:Cvib_0787 hypothetical protein YP_002016013.1 PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: dps:DP0092 hypothetical protein YP_002016014.1 KEGG: dol:Dole_2023 hypothetical protein YP_002016015.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dvu:DVU1058 cobalt transport protein CbiM YP_002016016.1 KEGG: dvl:Dvul_1922 hypothetical protein YP_002016017.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein YP_002016018.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3433 hypothetical protein YP_002016019.1 KEGG: cte:CT0983 hypothetical protein YP_002016020.1 KEGG: cph:Cpha266_1091 hypothetical protein YP_002016021.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_002016022.1 KEGG: cph:Cpha266_1088 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_002016023.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; KEGG: cph:Cpha266_1087 lytic transglycosylase, catalytic YP_002016024.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002016025.1 PFAM: alpha amylase catalytic region; KEGG: cph:Cpha266_1085 alpha-amylase family protein YP_002016026.1 PFAM: PfkB domain protein; KEGG: pvi:Cvib_0779 PfkB domain protein YP_002016027.1 PFAM: Na+/solute symporter; KEGG: cph:Cpha266_1083 Na+/solute symporter YP_002016028.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: plt:Plut_1179 Maf-like protein YP_002016029.1 PFAM: HMG-I and HMG-Y DNA-binding domain protein; Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cte:CT0972 anti-anti-sigma factor YP_002016030.1 PFAM: fatty acid hydroxylase; KEGG: cph:Cpha266_1574 sterol desaturase YP_002016031.1 catalyzes the transfer of a methylene group from S-adenosyl-L-methionine to the cis double bond of an unsaturated fatty acid chain resulting in the replacement of the double bond with a methylene bridge YP_002016032.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1074 uncharacterised conserved protein UCP016719 YP_002016034.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_1436 tagatose-bisphosphate aldolase YP_002016035.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002016036.1 PFAM: PSP1 domain protein; KEGG: cph:Cpha266_1012 PSP1 domain protein YP_002016037.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cte:CT0967 hypothetical protein YP_002016038.1 PFAM: aminotransferase class I and II; KEGG: pvi:Cvib_0768 aminotransferase YP_002016039.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002016040.1 PFAM: Protein of unknown function methylase KEGG: cte:CT0964 methylase YP_002016041.1 PFAM: Transketolase domain protein; KEGG: cph:Cpha266_1017 transketolase subunit A YP_002016042.1 KEGG: plt:Plut_1193 DedA family protein YP_002016043.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002016044.1 KEGG: pvi:Cvib_0762 hypothetical protein YP_002016045.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pvi:Cvib_0761 endonuclease/exonuclease/phosphatase YP_002016046.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient YP_002016047.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002016048.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1253 hydrolase, alpha/beta hydrolase fold family YP_002016049.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pvi:Cvib_0755 tRNA/rRNA methyltransferase (SpoU) YP_002016050.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: cte:CT1256 histidinol-phosphate aminotransferase YP_002016051.1 PFAM: Sigma-70 region 4 type 2; KEGG: pvi:Cvib_0753 RNA polymerase, sigma-24 subunit, ECF subfamily YP_002016052.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: cte:CT1258 ADP-L-glycero-D-mannoheptose-6-epimerase YP_002016053.1 PFAM: PhoH family protein; KEGG: cte:CT1259 PhoH family protein YP_002016054.1 PFAM: protein of unknown function DUF1568; KEGG: cph:Cpha266_1487 protein of unknown function DUF1568 YP_002016055.1 KEGG: plt:Plut_0531 hypothetical protein YP_002016056.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cte:CT1260 ferredoxin, 4Fe-4S YP_002016057.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: pvi:Cvib_0749 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_002016058.1 TIGRFAM: bacteriochlorophyll/chlorophyll synthetase; PFAM: UbiA prenyltransferase; KEGG: cph:Cpha266_1449 bacteriochlorophyll/chlorophyll a synthase YP_002016059.1 PFAM: glycosyl transferase family 2; KEGG: cch:Cag_1106 glycosyl transferase YP_002016060.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1454 conserved hypothetical protein 730 YP_002016061.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pvi:Cvib_1136 protein tyrosine phosphatase YP_002016062.1 this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae YP_002016063.1 PFAM: protein of unknown function DUF255; KEGG: cte:CT1279 hypothetical protein YP_002016064.1 KEGG: plt:Plut_0810 hypothetical protein YP_002016065.1 KEGG: cte:CT1285 hypothetical protein YP_002016066.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pvi:Cvib_0734 RND efflux system, outer membrane lipoprotein, NodT family YP_002016067.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: cte:CT1287 multidrug resistance protein, AcrB/AcrD family YP_002016068.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: fjo:Fjoh_4299 efflux transporter, RND family, MFP subunit YP_002016069.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: plt:Plut_0805 transcriptional regulator, AraC family YP_002016070.1 PFAM: acriflavin resistance protein; KEGG: rma:Rmag_0369 acriflavin resistance protein YP_002016071.1 KEGG: rma:Rmag_0582 outer membrane protein-like YP_002016072.1 PFAM: Abortive infection protein; KEGG: plt:Plut_0757 abortive infection protein-like YP_002016073.1 PFAM: pentapeptide repeat protein; KEGG: cph:Cpha266_1984 pentapeptide repeat protein YP_002016074.1 KEGG: cch:Cag_0867 hypothetical protein YP_002016075.1 TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: cte:CT1232 geranylgeranyl hydrogenase BchP YP_002016076.1 PFAM: ferrochelatase; KEGG: pvi:Cvib_1664 ferrochelatase YP_002016077.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein YP_002016079.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: cph:Cpha266_2109 methyltransferase type 11 YP_002016080.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: cte:CT1978 hypothetical protein YP_002016081.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: cte:CT1977 hypothetical protein YP_002016082.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: cte:CT1976 hypothetical protein YP_002016083.1 TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: cte:CT1975 hypothetical protein YP_002016084.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: cte:CT1974 hypothetical protein YP_002016085.1 TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2; KEGG: cte:CT1973 hypothetical protein YP_002016086.1 TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1; KEGG: cte:CT1972 hypothetical protein YP_002016087.1 KEGG: cte:CT1971 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; SMART: DEAD-like helicases YP_002016088.1 KEGG: ppd:Ppro_2346 DNA-directed DNA polymerase; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_002016089.1 KEGG: cph:Cpha266_1438 hypothetical protein YP_002016091.1 KEGG: plt:Plut_0890 hypothetical protein YP_002016092.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1903 BchE/P-methylase family protein YP_002016094.1 KEGG: cph:Cpha266_1360 hypothetical protein YP_002016097.1 PFAM: response regulator receiver; KEGG: ctc:CTC01130 transcriptional regulatory protein YP_002016098.1 KEGG: cph:Cpha266_1834 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002016099.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: plt:Plut_0330 uridine kinase-like YP_002016100.1 KEGG: cch:Cag_0489 IMP dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase YP_002016102.1 PFAM: penicillin-binding protein transpeptidase; KEGG: cph:Cpha266_1596 beta-lactamase YP_002016103.1 KEGG: plt:Plut_0787 magnesium-chelatase, subunit H; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_002016104.1 KEGG: plt:Plut_0786 magnesium chelatase ATPase subunit D; TIGRFAM: magnesium chelatase ATPase subunit D; PFAM: magnesium chelatase ChlI subunit; von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002016105.1 KEGG: cph:Cpha266_1631 protoporphyrin IX magnesium-chelatase; TIGRFAM: magnesium chelatase ATPase subunit I; SMART: AAA ATPase YP_002016106.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: cte:CT1298 dihydrolipoamide dehydrogenase YP_002016107.1 KEGG: cph:Cpha266_1633 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_002016108.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: cte:CT1300 hypothetical protein YP_002016109.1 KEGG: pvi:Cvib_1062 hypothetical protein YP_002016110.1 KEGG: hma:rrnAC0202 hypothetical protein YP_002016111.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: cph:Cpha266_1010 Oligopeptidase B. Serine peptidase. MEROPS family S09A YP_002016112.1 PFAM: Radical SAM domain protein; KEGG: plt:Plut_0870 arylsulfatase regulator (Fe-S oxidoreductase) YP_002016113.1 KEGG: plt:Plut_0867 hypothetical protein YP_002016114.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1008 transcriptional regulator, Fis family YP_002016115.1 KEGG: plt:Plut_0779 hypothetical protein YP_002016117.1 KEGG: rrs:RoseRS_2688 hypothetical protein YP_002016118.1 KEGG: cph:Cpha266_0458 hypothetical protein YP_002016119.1 PFAM: protein of unknown function DUF323; KEGG: cph:Cpha266_0457 signal transduction protein with NACHT domain YP_002016120.1 KEGG: rrs:RoseRS_2688 hypothetical protein YP_002016121.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: plt:Plut_1073 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate YP_002016122.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pfu:PF0754 2-keto acid:ferredoxin oxidoreductase subunit alpha YP_002016123.1 PFAM: nuclease (SNase domain protein); KEGG: dvl:Dvul_2575 nuclease (SNase domain protein) YP_002016124.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_002016125.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cph:Cpha266_1636 short-chain dehydrogenase/reductase SDR YP_002016126.1 PFAM: alpha/beta hydrolase fold; KEGG: cph:Cpha266_1637 alpha/beta hydrolase fold YP_002016127.1 PFAM: thymidylate kinase; KEGG: cte:CT1313 thymidylate kinase YP_002016128.1 KEGG: cph:Cpha266_1639 hypothetical protein YP_002016129.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: cph:Cpha266_1640 beta-phosphoglucomutase family hydrolase YP_002016130.1 TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: pvi:Cvib_1048 queuosine biosynthesis protein YP_002016131.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: cte:CT1317 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_002016132.1 PFAM: thioesterase superfamily protein; KEGG: cch:Cag_0930 phenylacetic acid degradation-related protein YP_002016133.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1644 radical SAM domain protein YP_002016134.1 PFAM: HipA domain protein; KEGG: dol:Dole_2637 HipA domain protein YP_002016135.1 PFAM: helix-turn-helix domain protein; KEGG: dol:Dole_2636 transcriptional regulator, XRE family YP_002016136.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002016137.1 KEGG: cte:CT1324 DNA polymerase III, gamma/tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_002016138.1 PFAM: ribonuclease BN; KEGG: cte:CT1325 ribonuclease BN YP_002016139.1 PFAM: major facilitator superfamily MFS_1; KEGG: cte:CT1337 MFS transporter family protein YP_002016140.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002016141.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: cte:CT1339 hypothetical protein YP_002016142.1 TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cch:Cag_0939 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_002016143.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002016144.1 PFAM: biotin/lipoate A/B protein ligase; KEGG: pvi:Cvib_0724 biotin/lipoate A/B protein ligase YP_002016145.1 KEGG: cph:Cpha266_1660 hypothetical protein YP_002016146.1 PFAM: CoA-binding domain protein; KEGG: cte:CT1344 hypothetical protein YP_002016147.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002016148.1 KEGG: cte:CT1346 hypothetical protein YP_002016149.1 PFAM: outer membrane efflux protein; KEGG: cph:Cpha266_1665 outer membrane efflux protein YP_002016150.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cph:Cpha266_1666 efflux transporter, RND family, MFP subunit YP_002016151.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: plt:Plut_1335 ATPase YP_002016152.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1668 protein of unknown function DUF214 YP_002016153.1 PFAM: protein of unknown function DUF214; KEGG: pvi:Cvib_0716 protein of unknown function DUF214 YP_002016154.1 KEGG: hch:HCH_01698 predicted membrane protein YP_002016155.1 KEGG: cph:Cpha266_1670 hypothetical protein YP_002016156.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: plt:Plut_1338 OmpA family protein YP_002016157.1 PFAM: protein of unknown function DUF547; glycoside hydrolase 15-related; KEGG: rxy:Rxyl_1262 glycoside hydrolase 15-related YP_002016158.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: cph:Cpha266_1673 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002016159.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002016160.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_002016161.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cte:CT1364 peptide ABC transporter, permease protein YP_002016162.1 PFAM: NUDIX hydrolase; KEGG: cph:Cpha266_1677 NUDIX hydrolase YP_002016163.1 KEGG: cph:Cpha266_1678 hypothetical protein YP_002016164.1 PFAM: ComEC/Rec2-related protein; KEGG: plt:Plut_1346 ComEC/Rec2-related protein YP_002016165.1 KEGG: cch:Cag_1108 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_002016166.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: cte:CT1371 diaminopimelate decarboxylase YP_002016167.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002016168.1 PFAM: protein of unknown function DUF164; KEGG: plt:Plut_1350 hypothetical protein YP_002016169.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: cph:Cpha266_1729 aminotransferase YP_002016170.1 PFAM: protein of unknown function DUF456; KEGG: cte:CT0321 hypothetical protein YP_002016171.1 KEGG: pin:Ping_1911 hypothetical protein YP_002016172.1 PFAM: protein of unknown function UPF0054; KEGG: cch:Cag_1173 hypothetical protein YP_002016173.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cte:CT1384 GTP-binding protein HflX YP_002016174.1 PFAM: Squalene/phytoene synthase; KEGG: cph:Cpha266_1738 squalene/phytoene synthase YP_002016175.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002016176.1 PFAM: AAA-4 family protein; KEGG: cph:Cpha266_1740 transcriptional regulator YP_002016177.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_1219 NAD-dependent epimerase/dehydratase YP_002016178.1 PFAM: NGN domain protein; KEGG: cte:CT0622 transcriptional regulator, NusG/RfaH family YP_002016179.1 KEGG: pvi:Cvib_1223 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_002016180.1 KEGG: cte:CT1398 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_002016181.1 KEGG: cte:CT0186 hypothetical protein YP_002016182.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: cph:Cpha266_2590 glycerol kinase YP_002016183.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002016184.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002016185.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002016186.1 KEGG: cte:CT1409 hypothetical protein YP_002016187.1 PFAM: protein of unknown function UPF0047; KEGG: plt:Plut_1410 hypothetical protein YP_002016188.1 PFAM: glutamine synthetase catalytic region; KEGG: cph:Cpha266_0832 glutamine synthetase, catalytic region YP_002016189.1 PFAM: regulatory protein AsnC/Lrp family; regulatory protein MarR; regulatory protein Crp; KEGG: cte:CT1412 transcriptional regulator, AsnC family YP_002016190.1 KEGG: pvi:Cvib_1232 hypothetical protein YP_002016191.1 PFAM: amine oxidase; KEGG: cte:CT1414 zeta-carotene desaturase YP_002016192.1 KEGG: cph:Cpha266_0828 hypothetical protein YP_002016193.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT1416 glycosyl transferase YP_002016194.1 KEGG: cph:Cpha266_0826 chlorosome envelope protein H YP_002016195.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: plt:Plut_1417 two component transcriptional regulator, fis family YP_002016196.1 KEGG: cte:CT1418 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_002016197.1 PFAM: LmbE family protein; KEGG: cch:Cag_1596 hypothetical protein YP_002016198.1 PFAM: HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_500 thioredoxin reductase YP_002016199.1 PFAM: extracellular solute-binding protein family 5; KEGG: cph:Cpha266_1789 extracellular solute-binding protein, family 5 YP_002016200.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: cph:Cpha266_1790 2-vinyl bacteriochlorophyllide hydratase YP_002016201.1 TIGRFAM: chlorophyll synthesis pathway, BchC; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: plt:Plut_1422 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide YP_002016202.1 KEGG: cte:CT1423 chlorophyllide reductase, BchX subunit; TIGRFAM: chlorophyllide reductase iron protein subunit X; PFAM: NifH/frxC-family protein; Sigma-70 region 4 type 2 YP_002016203.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cph:Cpha266_1793 GTP-binding protein TypA YP_002016204.1 PFAM: cytochrome c assembly protein; KEGG: plt:Plut_1425 HemX protein YP_002016205.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002016206.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002016207.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: plt:Plut_1428 uroporphyrinogen-III synthase YP_002016208.1 PFAM: protein of unknown function DUF195; KEGG: dsy:DSY2067 hypothetical protein YP_002016209.1 KEGG: cte:CT1430 myo-inositol-1(or 4)-monophosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase YP_002016210.1 KEGG: cph:Cpha266_1800 hypothetical protein YP_002016211.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: oih:OB0384 hypothetical protein YP_002016213.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002016214.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002016215.1 KEGG: cte:CT1436 serine acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein YP_002016216.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cch:Cag_0421 6-pyruvoyl tetrahydrobiopterin synthase YP_002016217.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cch:Cag_0596 acetyltransferase, GNAT family YP_002016218.1 KEGG: cph:Cpha266_0396 hypothetical protein YP_002016219.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: cph:Cpha266_1457 dinitrogenase iron-molybdenum cofactor biosynthesis YP_002016220.1 PFAM: protein of unknown function DUF89; KEGG: cph:Cpha266_1577 protein of unknown function DUF89 YP_002016221.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: cph:Cpha266_1251 DEAD/DEAH box helicase domain protein YP_002016223.1 KEGG: cph:Cpha266_0655 hypothetical protein YP_002016224.1 PFAM: Radical SAM domain protein; KEGG: plt:Plut_1460 elongator protein 3/MiaB/NifB YP_002016225.1 PFAM: PUCC protein; major facilitator superfamily MFS_1; KEGG: plt:Plut_1461 PucC protein YP_002016226.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002016227.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002016228.1 KEGG: cph:Cpha266_1853 hypothetical protein YP_002016229.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002016230.1 KEGG: cph:Cpha266_1855 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein YP_002016231.1 TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: cte:CT1448 anthranilate synthase component I YP_002016232.1 KEGG: cte:CT1449 hypothetical protein YP_002016233.1 KEGG: cph:Cpha266_1858 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein YP_002016234.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002016235.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cte:CT1453 methionyl-tRNA formyltransferase YP_002016236.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002016237.1 PFAM: MscS Mechanosensitive ion channel; KEGG: ppd:Ppro_3258 MscS mechanosensitive ion channel YP_002016238.1 PFAM: ferric-uptake regulator; KEGG: cph:Cpha266_0314 ferric uptake regulator, Fur family YP_002016239.1 PFAM: sodium/hydrogen exchanger; KEGG: nmr:Nmar_0021 sodium/hydrogen exchanger YP_002016240.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002016241.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002016242.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1866 ABC transporter related YP_002016243.1 PFAM: major facilitator superfamily MFS_1; KEGG: pvi:Cvib_1297 major facilitator superfamily MFS_1 YP_002016244.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cch:Cag_0449 L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase YP_002016245.1 KEGG: pvi:Cvib_1310 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_002016246.1 PFAM: Proto-chlorophyllide reductase 57 kD subunit; KEGG: cph:Cpha266_1871 Proto-chlorophyllide reductase 57 kD subunit YP_002016247.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002016248.1 PFAM: GrpE protein; KEGG: cch:Cag_1423 molecular chaperone GrpE (heat shock protein)-like YP_002016249.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: cph:Cpha266_1874 heat-inducible transcription repressor HrcA YP_002016250.1 TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, release factor-specific; PFAM: RNA methylase; O-methyltransferase family 3; methyltransferase small; Methyltransferase type 12; KEGG: cte:CT1487 hemK protein YP_002016251.1 KEGG: cph:Cpha266_1876 hypothetical protein YP_002016252.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002016253.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cph:Cpha266_1878 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_002016254.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cph:Cpha266_1882 xanthine/uracil/vitamin C permease YP_002016255.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: plt:Plut_1495 carbon-nitrogen hydrolase family protein YP_002016256.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002016257.1 PFAM: Sporulation domain protein; KEGG: pvi:Cvib_1322 sporulation domain protein YP_002016258.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cte:CT1497 sigma-54-dependent transcriptional regulator YP_002016259.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cph:Cpha266_1887 apolipoprotein N-acyltransferase YP_002016260.1 PFAM: bacteriochlorophyll A protein; KEGG: cph:Cpha266_1888 bacteriochlorophyll A protein YP_002016261.1 PFAM: regulatory protein MerR; KEGG: cch:Cag_1328 transcriptional regulator, MerR family YP_002016262.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_1890 ABC transporter related YP_002016263.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_1895 radical SAM domain protein YP_002016264.1 This protein performs the mismatch recognition step during the DNA repair process YP_002016265.1 KEGG: cph:Cpha266_1897 hypothetical protein YP_002016266.1 PFAM: ribosomal protein L21; KEGG: cch:Cag_0864 50S ribosomal protein L21 YP_002016267.1 involved in the peptidyltransferase reaction during translation YP_002016268.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_002016269.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: cte:CT1508 hypothetical protein YP_002016270.1 PFAM: peptidase M48 Ste24p; KEGG: cph:Cpha266_1902 STE24 endopeptidase YP_002016271.1 KEGG: pmy:Pmen_4076 hypothetical protein YP_002016272.1 PFAM: Na+/Picotransporter; KEGG: amr:AM1_5305 NptA protein YP_002016273.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cte:CT1510 carbon-nitrogen hydrolase family protein YP_002016274.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_002016275.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pvi:Cvib_1336 FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002016276.1 KEGG: plt:Plut_1517 hypothetical protein YP_002016277.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002016278.1 PFAM: NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30; KEGG: cte:CT2083 hypothetical protein YP_002016279.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_1911 uncharacterized protein UPF0114 YP_002016280.1 KEGG: cte:CT1122 hypothetical protein YP_002016281.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: swd:Swoo_2673 thiamine pyrophosphate protein TPP binding domain protein YP_002016282.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: cph:Cpha266_1912 magnesium and cobalt transport protein CorA YP_002016283.1 PFAM: conserved hypothetical protein; KEGG: hne:HNE_0896 hypothetical protein YP_002016284.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: rca:Rcas_3954 Na+/Ca+ antiporter, CaCA family YP_002016285.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: cte:CT1524 phosphoketolase YP_002016286.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: cte:CT1525 acetate kinase YP_002016287.1 KEGG: deb:DehaBAV1_0039 hypothetical protein YP_002016288.1 KEGG: cte:CT1527 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_002016289.1 PFAM: pyruvate carboxyltransferase; KEGG: cph:Cpha266_1918 homocitrate synthase YP_002016290.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cph:Cpha266_1919 DNA-binding protein fis / transcriptional regulator, Fis family YP_002016291.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: psa:PST_0946 large conductance mechanosensitive channel protein YP_002016292.1 nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex YP_002016293.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1344 nitrogen regulatory protein P-II YP_002016294.1 PFAM: nitrogen regulatory protein P-II; KEGG: pvi:Cvib_1345 nitrogen regulatory protein P-II YP_002016295.1 KEGG: cte:CT1536 nitrogenase molybdenum-iron protein, alpha subunit; TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1 YP_002016296.1 KEGG: plt:Plut_1532 nitrogenase molybdenum-iron protein beta chain; TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase component 1 YP_002016297.1 KEGG: plt:Plut_1533 nitrogenase MoFe cofactor biosynthesis protein NifE; TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase component 1 YP_002016298.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cph:Cpha266_0738 nitrogenase YP_002016299.1 KEGG: cte:CT1540 NifB protein; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002016300.1 KEGG: cph:Cpha266_0736 ferredoxin, 2Fe-2S YP_002016301.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; KEGG: cph:Cpha266_0441 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_002016302.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cph:Cpha266_0442 transcriptional regulator, Fis family YP_002016303.1 PFAM: regulatory protein LysR; TOBE domain protein; KEGG: pvi:Cvib_1354 transcriptional regulator, ModE family YP_002016304.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gsu:GSU2314 sensory box histidine kinase/response regulator YP_002016305.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cte:CT1792 hydrogenase expression/formation protein HypE YP_002016306.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: cte:CT1794 hydrogenase expression/formation protein HypD YP_002016307.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: cte:CT1795 hydrogenase assembly chaperone HypC/HupF YP_002016308.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: cph:Cpha266_0722 (NiFe) hydrogenase maturation protein HypF YP_002016309.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: cte:CT1798 hydrogenase accessory protein HypB YP_002016310.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: cte:CT1799 hydrogenase expression/formation protein HupA YP_002016311.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002016312.1 KEGG: cte:CT1801 hypothetical protein YP_002016313.1 PFAM: NUDIX hydrolase; KEGG: pvi:Cvib_0546 NUDIX hydrolase YP_002016314.1 KEGG: cph:Cpha266_0714 hypothetical protein YP_002016315.1 KEGG: cte:CT1805 hypothetical protein YP_002016316.1 PFAM: Na+/solute symporter; KEGG: pvi:Cvib_0542 Na+/solute symporter YP_002016317.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002016318.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_0709 tetratricopeptide TPR_2 repeat protein YP_002016319.1 PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: cph:Cpha266_0708 shikimate dehydrogenase YP_002016320.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002016321.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cph:Cpha266_0706 hydrolase, TatD family YP_002016322.1 KEGG: cph:Cpha266_0705 tetratricopeptide TPR_2 repeat protein YP_002016323.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cph:Cpha266_0704 peptidyl-prolyl cis-trans isomerase, cyclophilin type YP_002016324.1 PFAM: alanine racemase domain protein; KEGG: cch:Cag_1350 hypothetical protein YP_002016325.1 PFAM: aminotransferase class I and II; KEGG: aba:Acid345_1458 aminotransferase, class I and II YP_002016326.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002016327.1 KEGG: cph:Cpha266_0701 translation initiation factor 2B subunit I family (IF-2BI); TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related YP_002016328.1 PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: cph:Cpha266_0700 cytochrome bd ubiquinol oxidase, subunit I YP_002016329.1 KEGG: pvi:Cvib_0530 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II YP_002016330.1 KEGG: cte:CT1821 ABC transporter, ATP-binding protein CydD; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase YP_002016331.1 KEGG: pvi:Cvib_0528 ABC transporter, transmembrane region, type 1; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase YP_002016332.1 PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: cte:CT1823 outer membrane lipoprotein Blc YP_002016333.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_002016334.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: pvi:Cvib_0514 phosphoesterase, PA-phosphatase related YP_002016335.1 PFAM: glycosyl transferase family 39; KEGG: cph:Cpha266_0690 glycosyl transferase, family 39 YP_002016336.1 PFAM: glycosyl transferase family 2; KEGG: pvi:Cvib_0512 glycosyl transferase, family 2 YP_002016337.1 PFAM: conserved hypothetical protein; KEGG: cph:Cpha266_0688 hypothetical protein YP_002016338.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cph:Cpha266_0687 single-stranded-DNA-specific exonuclease RecJ YP_002016339.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_002016340.1 PFAM: metallophosphoesterase; KEGG: pvi:Cvib_0508 metallophosphoesterase YP_002016341.1 PFAM: Pirin domain protein; KEGG: cph:Cpha266_0684 pirin domain protein domain protein YP_002016342.1 KEGG: plt:Plut_0459 isocitrate dehydrogenase NADP-dependent, monomeric type; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type YP_002016343.1 KEGG: cph:Cpha266_0679 enoyl-[acyl-carrier-protein] reductase [NADH] YP_002016344.1 KEGG: cph:Cpha266_0678 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_002016345.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_002016346.1 KEGG: plt:Plut_0454 hypothetical protein YP_002016347.1 PFAM: UvrD/REP helicase; KEGG: pvi:Cvib_0501 ATP-dependent DNA helicase PcrA YP_002016348.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: prw:PsycPRwf_1042 transcriptional coactivator/pterin dehydratase YP_002016349.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: cph:Cpha266_0673 alpha amylase, catalytic region YP_002016350.1 PFAM: protein of unknown function UPF0047; KEGG: cch:Cag_1417 hypothetical protein YP_002016351.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002016352.1 PFAM: phosphatidylglycerophosphatase A; KEGG: cph:Cpha266_0670 phosphatidylglycerophosphatase YP_002016353.1 TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cph:Cpha266_0669 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_002016354.1 PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cph:Cpha266_0668 Smr protein/MutS2 YP_002016355.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_002016356.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_002016357.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002016358.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cph:Cpha266_0664 PHP C-terminal domain protein YP_002016359.1 PFAM: protein of unknown function DUF140; KEGG: cph:Cpha266_0663 protein of unknown function DUF140 YP_002016360.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cph:Cpha266_0662 ABC transporter related YP_002016361.1 PFAM: Mammalian cell entry related domain protein; KEGG: cph:Cpha266_0661 mammalian cell entry related domain protein YP_002016362.1 PFAM: beta-lactamase; KEGG: cte:CT0324 D-alanyl-D-alanine carboxypeptidease YP_002016363.1 PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cte:CT0323 gamma-carotene desaturase YP_002016364.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: plt:Plut_0434 iron-sulfur cluster-binding protein YP_002016365.1 involved in de novo purine biosynthesis YP_002016366.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: pvi:Cvib_0482 phosphoribosylglycinamide formyltransferase YP_002016367.1 PFAM: Radical SAM domain protein; KEGG: cch:Cag_0505 radical activating enzyme YP_002016368.1 PFAM: glycosyl transferase family 2; KEGG: cte:CT0317 glycosyl transferase YP_002016369.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_002016370.1 PFAM: protein of unknown function DUF214; KEGG: cph:Cpha266_1982 cell division protein FtsX YP_002016371.1 KEGG: cph:Cpha266_1983 hypothetical protein YP_002016372.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cte:CT0313 amidophosphoribosyltransferase YP_002016373.1 KEGG: pvi:Cvib_0476 transcriptional regulator, TraR/DksA family YP_002016374.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_002016375.1 KEGG: cph:Cpha266_1992 hypothetical protein YP_002016376.1 PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1350 conjugation TrbI-like protein YP_002016377.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: bbt:BBta_7448 conjugal transfer protein TrbG YP_002016378.1 PFAM: Conjugal transfer protein; KEGG: mlo:mlr6403 conjugal transfer protein TrbF YP_002016379.1 TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: xau:Xaut_2998 P-type conjugative transfer protein TrbL YP_002016381.1 KEGG: gme:Gmet_A3572 probable conjugal transfer TrbJ signal peptide protein YP_002016382.1 type IV secretion system VirB4 family YP_002016383.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: bbt:BBta_7743 conjugal transfer protein TrbD YP_002016384.1 PFAM: Conjugal transfer protein TrbC; KEGG: dac:Daci_2698 conjugal transfer protein TrbC YP_002016385.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: mes:Meso_0509 type II secretion system protein E YP_002016386.1 KEGG: pau:PA14_31080 conjugal transfer protein YP_002016387.1 KEGG: rpa:RPA2225 probable conjugal transfer protein TrbG YP_002016388.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0516 dTDP-glucose 4,6-dehydratase YP_002016389.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cte:CT0307 dTDP-4-dehydrorhamnose reductase YP_002016390.1 KEGG: cte:CT0306 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_002016391.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_1998 glucose-1-phosphate thymidylyltransferase YP_002016392.1 KEGG: pvi:Cvib_0473 mannose-1-phosphate guanylyltransferase (GDP); TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein YP_002016393.1 KEGG: pvi:Cvib_0835 hypothetical protein YP_002016394.1 KEGG: hch:HCH_05627 histone acetyltransferase HPA2/related acetyltransferase YP_002016395.1 PFAM: Protein of unknown function DUF1778; KEGG: hch:HCH_05628 hypothetical protein YP_002016396.1 KEGG: ypi:YpsIP31758_2989 hypothetical protein YP_002016397.1 PFAM: protein of unknown function DUF218; KEGG: pvi:Cvib_1452 protein of unknown function DUF218 YP_002016398.1 PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: gdi:GDI3141 phosphomannomutase YP_002016399.1 KEGG: dol:Dole_0232 hypothetical protein YP_002016400.1 KEGG: dol:Dole_0233 hypothetical protein YP_002016401.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: pvi:Cvib_0665 filamentation induced by cAMP protein Fic YP_002016402.1 KEGG: dol:Dole_1759 prevent-host-death family protein YP_002016403.1 PFAM: PilT protein domain protein; KEGG: dol:Dole_1760 PilT protein domain protein YP_002016404.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002016405.1 PFAM: UspA domain protein; KEGG: cph:Cpha266_1162 UspA domain protein YP_002016407.1 PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mar:MAE_55670 GHMP kinase YP_002016408.1 TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pin:Ping_3285 D,D-heptose 1,7-bisphosphate phosphatase YP_002016409.1 PFAM: Nucleotidyl transferase; KEGG: mar:MAE_55660 mannose-1-phosphate guanyltransferase YP_002016410.1 TIGRFAM: phosphoheptose isomerase; KEGG: hch:HCH_06182 phosphoheptose isomerase YP_002016411.1 PFAM: adenylylsulfate kinase; KEGG: pvi:Cvib_0635 adenylylsulfate kinase YP_002016412.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_0649 NAD-dependent epimerase/dehydratase YP_002016413.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: pvi:Cvib_0633 TrkA-C domain protein YP_002016414.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: pvi:Cvib_0632 3'(2'),5'-bisphosphate nucleotidase YP_002016415.1 TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein; KEGG: pvi:Cvib_0631 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase YP_002016416.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002016417.1 PFAM: glycosyl transferase group 1; KEGG: rci:RCIX1465 glycosyltransferase (group 1) YP_002016418.1 TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; adenylylsulfate kinase; elongation factor Tu domain 2 protein; KEGG: pvi:Cvib_0631 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase YP_002016419.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_002016420.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cch:Cag_0516 dTDP-glucose 4,6-dehydratase YP_002016421.1 KEGG: cch:Cag_0514 dTDP-4-dehydrorhamnose 3,5-epimerase related; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_002016422.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_1998 glucose-1-phosphate thymidylyltransferase YP_002016423.1 PFAM: glycosyl transferase family 2; KEGG: cac:CAC3069 predicted glycosyltransferase YP_002016424.1 KEGG: slo:Shew_3437 O-antigen polymerase YP_002016425.1 PFAM: sulfotransferase; KEGG: sus:Acid_6632 hypothetical protein YP_002016426.1 KEGG: amr:AM1_5717 sulfotransferase YP_002016427.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: sfu:Sfum_0777 polysaccharide biosynthesis protein YP_002016428.1 PFAM: S23 ribosomal protein; KEGG: cph:Cpha266_2609 S23 ribosomal protein YP_002016429.1 PFAM: glycosyl transferase family 4; KEGG: hch:HCH_02401 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase YP_002016430.1 crystal structure of protein from Xanthomonas shows pentameric toroidal structure; physiological function is unknown YP_002016432.1 KEGG: spu:575554 hypothetical LOC575554 YP_002016433.1 KEGG: cch:Cag_0645 hypothetical protein YP_002016434.1 PFAM: S23 ribosomal protein; KEGG: gur:Gura_3825 hypothetical protein YP_002016435.1 KEGG: cph:Cpha266_2649 lipopolysaccharide biosynthesis; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein YP_002016436.1 PFAM: S23 ribosomal protein; KEGG: gur:Gura_3825 hypothetical protein YP_002016437.1 KEGG: plt:Plut_0763 hypothetical protein YP_002016438.1 PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: pvi:Cvib_1499 alpha amylase, catalytic region YP_002016439.1 PFAM: Cytochrome b/b6 domain; KEGG: cch:Cag_0395 cytochrome b-c complex, cytochrome b subunit YP_002016440.1 PFAM: Rieske [2Fe-2S] domain protein; Cytochrome b6-f complex Fe-S subunit; KEGG: cph:Cpha266_0429 Plastoquinol--plastocyanin reductase YP_002016441.1 KEGG: cph:Cpha266_0428 hydroxyneurosporene synthase YP_002016442.1 PFAM: protein of unknown function DUF1568; KEGG: pvi:Cvib_1216 protein of unknown function DUF1568 YP_002016443.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002016444.1 KEGG: cph:Cpha266_0426 FtsH peptidase. Metallo peptidase. MEROPS family M41; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase YP_002016445.1 KEGG: cph:Cpha266_0425 hypothetical protein YP_002016446.1 PFAM: histone family protein DNA-binding protein; KEGG: cte:CT0295 DNA-binding protein HU-alpha YP_002016447.1 KEGG: pvi:Cvib_1507 hypothetical protein YP_002016448.1 PFAM: Citrate transporter; KEGG: pvi:Cvib_1508 hypothetical protein YP_002016449.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002016450.1 KEGG: pvi:Cvib_1510 MiaB-like tRNA modifying enzyme; TIGRFAM: RNA modification enzyme, MiaB family; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB YP_002016451.1 KEGG: pvi:Cvib_1511 hypothetical protein YP_002016452.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cph:Cpha266_0420 cell cycle protein YP_002016453.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002016454.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002016455.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002016456.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002016457.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_2266 short-chain dehydrogenase/reductase SDR YP_002016458.1 KEGG: cte:CT1770 hypothetical protein YP_002016459.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cch:Cag_1639 oxidoreductase, short-chain dehydrogenase/reductase family YP_002016460.1 PFAM: ribulose bisphosphate carboxylase large chain; KEGG: cch:Cag_1640 ribulose-bisphosphate carboxylase large chain YP_002016461.1 PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: cte:CT1773 hypothetical protein YP_002016462.1 PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KEGG: plt:Plut_0410 short chain dehydrogenase YP_002016463.1 KEGG: cch:Cag_1643 hypothetical protein YP_002016464.1 PFAM: 2-vinyl bacteriochlorophyllide hydratase; KEGG: plt:Plut_0408 2-vinyl bacteriochlorophyllide hydratase YP_002016465.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT1777 bacteriochlorophyll c8 methyltransferase YP_002016466.1 PFAM: regulatory protein RecX; KEGG: cte:CT1778 regulatory protein RecX YP_002016467.1 Catalyzes the phosphorylation of UMP to UDP YP_002016468.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002016469.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002016470.1 forms a direct contact with the tRNA during translation YP_002016471.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002016472.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002016473.1 PFAM: protein of unknown function DUF59; KEGG: cph:Cpha266_2014 protein of unknown function DUF59 YP_002016474.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: plt:Plut_0398 NifU protein YP_002016475.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: cph:Cpha266_2016 cell divisionFtsK/SpoIIIE YP_002016476.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002016478.1 KEGG: sco:SCO7037 secreted protein YP_002016479.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmf:P9303_28711 hypothetical protein YP_002016480.1 KEGG: cch:Cag_0710 hypothetical protein YP_002016481.1 PFAM: protein of unknown function DUF477; KEGG: cch:Cag_1771 hypothetical protein YP_002016482.1 PFAM: protein of unknown function DUF477; KEGG: cph:Cpha266_2021 protein of unknown function DUF477 YP_002016483.1 PFAM: LemA family protein; KEGG: cph:Cpha266_2022 LemA family protein YP_002016484.1 KEGG: sru:SRU_1533 hypothetical protein YP_002016485.1 KEGG: plt:Plut_0392 metal dependent phosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_002016486.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002016488.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1548 peptidase, M16 family YP_002016489.1 PFAM: band 7 protein; KEGG: pvi:Cvib_1667 SPFH domain, band 7 family protein YP_002016490.1 PFAM: permease YjgP/YjgQ family protein; KEGG: cph:Cpha266_2026 permease YjgP/YjgQ family protein YP_002016491.1 PFAM: protein of unknown function DUF62; KEGG: cph:Cpha266_2027 protein of unknown function DUF62 YP_002016492.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: chy:CHY_1574 potassium uptake protein KtrA YP_002016493.1 PFAM: cation transporter; KEGG: lbj:LBJ_0414 potassium transport system, membrane component YP_002016494.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cch:Cag_0387 RNA polymerase sigma factor RpoD (sigma-A) YP_002016495.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002016496.1 KEGG: plt:Plut_0385 peptidase S14, ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_002016497.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor YP_002016498.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: cph:Cpha266_2032 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_002016499.1 PFAM: surface antigen (D15); Patatin; KEGG: pvi:Cvib_0421 surface antigen (D15) YP_002016500.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_002016501.1 KEGG: cte:CT1558 hypothetical protein YP_002016502.1 KEGG: gvi:glr3963 thiol-disulfide interchange protein DsbD homolog YP_002016503.1 PFAM: cytochrome c assembly protein; KEGG: cph:Cpha266_1808 cytochrome c assembly protein YP_002016504.1 KEGG: cph:Cpha266_1807 hypothetical protein YP_002016505.1 KEGG: pvi:Cvib_0418 transcriptional regulator, fis family YP_002016506.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: gsu:GSU1350 ThiF family protein YP_002016507.1 KEGG: plt:Plut_0358 hypothetical protein YP_002016508.1 PFAM: conserved hypothetical protein; KEGG: cte:CT1564 hypothetical protein YP_002016509.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002016510.1 KEGG: cch:Cag_0299 hypothetical protein YP_002016511.1 PFAM: diacylglycerol kinase catalytic region; KEGG: plt:Plut_0354 hypothetical protein YP_002016512.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cte:CT1568 protein-tyrosine-phosphatase YP_002016513.1 KEGG: cte:CT1571 hypothetical protein YP_002016514.1 KEGG: cte:CT1571 hypothetical protein YP_002016515.1 KEGG: cte:CT1571 hypothetical protein YP_002016516.1 KEGG: cte:CT1571 hypothetical protein YP_002016517.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cph:Cpha266_2070 aldehyde dehydrogenase YP_002016518.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cte:CT1574 hypothetical protein YP_002016519.1 catalyzes branch migration in Holliday junction intermediates YP_002016520.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002016521.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002016522.1 TIGRFAM: chlorophyllide reductase subunit Y; PFAM: oxidoreductase/nitrogenase component 1; KEGG: cch:Cag_0324 chlorophyllide reductase subunit Y YP_002016523.1 KEGG: cte:CT1827 hypothetical protein YP_002016524.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002016525.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_002016526.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: cte:CT1831 D-tyrosyl-tRNA(Tyr) deacylase YP_002016527.1 PFAM: protein of unknown function DUF167; KEGG: cph:Cpha266_2081 protein of unknown function DUF167 YP_002016528.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002016529.1 KEGG: cte:CT1834 citrate synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_002016530.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: vvy:VV2044 sodium/alanine symporter YP_002016531.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: fjo:Fjoh_2969 peptidoglycan-binding domain 1 protein YP_002016532.1 KEGG: cph:Cpha266_2085 hypothetical protein YP_002016534.1 PFAM: Domain of unknown function DUF1848; KEGG: chy:CHY_2128 hypothetical protein YP_002016535.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_2087 tetratricopeptide TPR_2 repeat protein YP_002016536.1 TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: cte:CT1838 menaquinone-specific isochorismate synthase YP_002016537.1 TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; KEGG: cph:Cpha266_2089 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase YP_002016538.1 PFAM: alpha/beta hydrolase fold; KEGG: cch:Cag_1720 thioesterase, menaquinone synthesis protein YP_002016539.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_002016540.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: pvi:Cvib_0393 O-succinylbenzoate-CoA synthase YP_002016541.1 TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cte:CT1848 O-succinylbenzoic acid--CoA ligase YP_002016542.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cph:Cpha266_1567 NADH:flavin oxidoreductase/NADH oxidase YP_002016543.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cte:CT1025 sulfide dehydrogenase, flavoprotein subunit YP_002016544.1 KEGG: plt:Plut_0325 hypothetical protein YP_002016545.1 PFAM: dihydrodipicolinate reductase; KEGG: plt:Plut_0324 dihydrodipicolinate reductase YP_002016546.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cph:Cpha266_2096 chromosome segregation DNA-binding protein YP_002016547.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cte:CT1852 ATPase, ParA family YP_002016548.1 TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: cte:CT1853 DNA-3-methyladenine glycosylase YP_002016549.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: pvi:Cvib_0386 magnesium transporter YP_002016550.1 PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: cch:Cag_1800 electron transfer flavoprotein-ubiquinone oxidoreductase YP_002016551.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002016552.1 PFAM: phospholipase/Carboxylesterase; KEGG: plt:Plut_0317 serine esterase YP_002016553.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_002016554.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cph:Cpha266_2142 peptidoglycan-binding domain 1 protein YP_002016555.1 KEGG: cph:Cpha266_2143 hypothetical protein YP_002016556.1 KEGG: pvi:Cvib_0378 hypothetical protein YP_002016557.1 PFAM: protein of unknown function DUF541; KEGG: cph:Cpha266_2145 protein of unknown function DUF541 YP_002016558.1 KEGG: cph:Cpha266_1734 hypothetical protein YP_002016559.1 KEGG: cph:Cpha266_2146 hypothetical protein YP_002016560.1 PFAM: Rhodanese domain protein; KEGG: cph:Cpha266_1575 rhodanese domain protein YP_002016561.1 KEGG: pvi:Cvib_0377 hypothetical protein YP_002016562.1 PFAM: MscS Mechanosensitive ion channel; KEGG: cte:CT2016 conserved hypothetical protein, AefA YP_002016563.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: cph:Cpha266_2148 transketolase YP_002016564.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: cph:Cpha266_2149 6-phosphogluconolactonase YP_002016565.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002016566.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_002016567.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: cph:Cpha266_2152 multi-sensor hybrid histidine kinase YP_002016568.1 PFAM: domain of unknown function DUF1745; KEGG: cph:Cpha266_2153 domain of unknown function DUF1745 YP_002016569.1 PFAM: protein of unknown function DUF541; KEGG: cph:Cpha266_2154 protein of unknown function DUF541 YP_002016570.1 KEGG: cph:Cpha266_1230 hypothetical protein YP_002016571.1 KEGG: cph:Cpha266_1229 succinylglutamate desuccinylase/aspartoacylase YP_002016572.1 PFAM: glycosyl transferase group 1; KEGG: plt:Plut_0304 glycosyl transferase YP_002016573.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pvi:Cvib_0364 YbaK/prolyl-tRNA synthetase associated region YP_002016574.1 KEGG: cph:Cpha266_0086 hypothetical protein YP_002016575.1 PFAM: surface antigen msp4 family protein; porin opacity type; KEGG: cph:Cpha266_0394 outer surface protein YP_002016576.1 PFAM: Patatin; KEGG: plt:Plut_0301 hypothetical protein YP_002016577.1 PFAM: Aldehyde Dehydrogenase_; KEGG: cte:CT1886 aldehyde dehydrogenase YP_002016578.1 PFAM: Integral membrane protein TerC; KEGG: cph:Cpha266_2160 integral membrane protein TerC YP_002016579.1 PFAM: peptidase S16 lon domain protein; KEGG: plt:Plut_0298 ATP-dependent protease YP_002016580.1 KEGG: cph:Cpha266_2161 UspA domain protein YP_002016581.1 KEGG: cph:Cpha266_2162 hypothetical protein YP_002016582.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: pvi:Cvib_0361 tRNA/rRNA methyltransferase (SpoU) YP_002016583.1 KEGG: cph:Cpha266_2164 hypothetical protein YP_002016584.1 PFAM: peptidase U32; KEGG: cph:Cpha266_2165 peptidase U32 YP_002016585.1 KEGG: cte:CT1891 hydrogenase/sulfur reductase, beta subunit YP_002016586.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cch:Cag_1567 hydrogenase/sulfur reductase, gamma subunit YP_002016587.1 PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: cte:CT1893 hydrogenase/sulfur reductase, delta subunit YP_002016588.1 PFAM: nickel-dependent hydrogenase large subunit; KEGG: cte:CT1894 hydrogenase/sulfur reductase, alpha subunit YP_002016589.1 KEGG: tde:TDE2679 hypothetical protein YP_002016590.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: cch:Cag_0246 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_002016591.1 PFAM: surface antigen msp4 family protein; KEGG: pvi:Cvib_1533 porin, opacity type YP_002016592.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pvi:Cvib_0357 MscS mechanosensitive ion channel YP_002016593.1 PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cph:Cpha266_2269 FAD dependent oxidoreductase YP_002016595.1 KEGG: cch:Cag_0249 acetyltransferase, CysE/LacA/LpxA/NodL family YP_002016596.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pvi:Cvib_0353 ABC transporter related YP_002016597.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cph:Cpha266_2273 radical SAM domain protein YP_002016598.1 SMART: metal-dependent phosphohydrolase HD region; KEGG: cph:Cpha266_2274 metal dependent phosphohydrolase YP_002016599.1 KEGG: plt:Plut_0286 hypothetical protein YP_002016600.1 PFAM: alpha/beta hydrolase fold; KEGG: cte:CT1908 3-oxoadipate enol-lactonase YP_002016601.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002016602.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002016603.1 KEGG: cte:CT1920 hypothetical protein YP_002016604.1 PFAM: CBS domain containing protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cph:Cpha266_2280 cysteine synthase YP_002016605.1 KEGG: cte:CT1922 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_002016606.1 KEGG: cte:CT1923 ComEA-related protein YP_002016607.1 KEGG: plt:Plut_0278 hypothetical protein YP_002016608.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: cph:Cpha266_2287 aspartate semialdehyde dehydrogenase YP_002016609.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: pvi:Cvib_0341 TIM-barrel protein, nifR3 family YP_002016610.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002016611.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; NmrA family protein; Male sterility domain; KEGG: cte:CT1931 dihydroflavonol 4-reductase family YP_002016612.1 PFAM: peptidase M16 domain protein; KEGG: cte:CT1932 peptidase, M16 family YP_002016613.1 TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; KEGG: cte:CT1934 trigger factor YP_002016614.1 KEGG: plt:Plut_0270 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_002016615.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pvi:Cvib_0334 dihydroneopterin aldolase YP_002016616.1 KEGG: plt:Plut_0268 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK YP_002016617.1 KEGG: cte:CT1939 ArsA ATPase family protein; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_002016618.1 KEGG: plt:Plut_0266 hypothetical protein YP_002016619.1 PFAM: bacteriochlorophyll C binding protein; KEGG: cph:Cpha266_2299 bacteriochlorophyll C binding protein YP_002016620.1 KEGG: plt:Plut_0264 chlorosome envelope protein C YP_002016621.1 KEGG: cph:Cpha266_2301 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_002016622.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cph:Cpha266_2302 dihydroorotate oxidase B, electron transfer subunit YP_002016623.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cte:CT1947 single-strand binding protein YP_002016624.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cph:Cpha266_2304 DNA polymerase III, delta subunit YP_002016625.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: cte:CT1949 NAD-dependent epimerase/dehydratase family protein/3-beta hydroxysteroid dehydrogenase/isomerase family protein YP_002016626.1 PFAM: aminotransferase class V; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; KEGG: cph:Cpha266_2306 8-amino-7-oxononanoate synthase YP_002016627.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cph:Cpha266_2310 TonB-dependent receptor YP_002016628.1 KEGG: cte:CT1955 magnesium-chelatase, bacteriochlorophyll c-specific subunit; TIGRFAM: magnesium chelatase, H subunit; PFAM: CobN/magnesium chelatase YP_002016629.1 PFAM: cell shape determining protein MreB/Mrl; KEGG: cte:CT0547 rod shape-determining protein MreB YP_002016631.1 TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: cph:Cpha266_2348 outer membrane autotransporter barrel domain YP_002016632.1 KEGG: plt:Plut_0254 hypothetical protein YP_002016633.1 catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis YP_002016634.1 catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine YP_002016635.1 KEGG: cph:Cpha266_2315 magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002016636.1 PFAM: heat shock protein Hsp20; KEGG: cph:Cpha266_2316 heat shock protein HSP20 YP_002016637.1 KEGG: cte:CT1979 hypothetical protein YP_002016638.1 KEGG: pca:Pcar_1487 predicted membrane protein YP_002016639.1 PFAM: Peptidase M23; KEGG: pvi:Cvib_0313 peptidase M23B YP_002016640.1 PFAM: Class I peptide chain release factor; KEGG: tcx:Tcr_0875 class I peptide chain release factor YP_002016641.1 KEGG: cph:Cpha266_2061 CRISPR-associated protein Cas1 YP_002016642.1 KEGG: cph:Cpha266_2062 conserved hypothetical cytosolic protein YP_002016645.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; KEGG: pth:PTH_0707 hypothetical protein YP_002016646.1 PFAM: protein of unknown function DUF324; KEGG: pth:PTH_0708 hypothetical protein YP_002016647.1 KEGG: pth:PTH_0709 hypothetical protein YP_002016648.1 TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: rca:Rcas_4240 CRISPR-associated RAMP protein, Cmr4 family YP_002016649.1 KEGG: rrs:RoseRS_2588 hypothetical protein YP_002016650.1 KEGG: pth:PTH_0714 hypothetical protein YP_002016651.1 KEGG: cph:Cpha266_2353 protein of unknown function DUF937 YP_002016652.1 PFAM: WD-40 repeat protein; KEGG: cph:Cpha266_2355 WD-40 repeat protein YP_002016653.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2356 glycosyl transferase, family 2 YP_002016654.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_002016655.1 PFAM: metallophosphoesterase; KEGG: cte:CT1989 hypothetical protein YP_002016656.1 catalyzes the synthesis of bacteriochlorophyll c which is the primary pigment in the chlorosomes of the photosynthetic green bacteria YP_002016657.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002016658.1 PFAM: nitrogen-fixing NifU domain protein; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: plt:Plut_0236 IscU protein YP_002016659.1 PFAM: aminotransferase class V; KEGG: pvi:Cvib_0301 aminotransferase, class V YP_002016660.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cph:Cpha266_2364 cysteine synthase YP_002016661.1 SMART: helix-turn-helix domain protein; KEGG: cph:Cpha266_2366 helix-turn-helix domain protein YP_002016662.1 KEGG: cte:CT1998 hypothetical protein YP_002016665.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: plt:Plut_0231 CBS YP_002016666.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002016667.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: pvi:Cvib_0747 serine-type D-Ala-D-Ala carboxypeptidase YP_002016668.1 KEGG: gur:Gura_2103 DNA topoisomerase, type IA, zn finger domain protein YP_002016669.1 PFAM: protein of unknown function UPF0118; KEGG: plt:Plut_0228 hypothetical protein YP_002016670.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002016671.1 KEGG: pvi:Cvib_0292 phosphoribosyltransferase YP_002016672.1 PFAM: ROK family protein; KEGG: cph:Cpha266_2372 ROK family protein YP_002016673.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_002016674.1 KEGG: plt:Plut_0223 hypothetical protein YP_002016675.1 KEGG: cte:CT2010 oxygen-independent coproporphyrinogen III oxidase, TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002016676.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: cte:CT2011 histidinol phosphatase-related protein YP_002016677.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002016678.1 KEGG: cph:Cpha266_2378 hypothetical protein YP_002016679.1 TIGRFAM: bacteriochlorophyll 4-vinyl reductase; KEGG: cph:Cpha266_2379 bacteriochlorophyll 4-vinyl reductase YP_002016680.1 KEGG: plt:Plut_0436 transposase-like YP_002016681.1 SMART: TIR protein; KEGG: vvy:VV1926 hypothetical protein YP_002016682.1 KEGG: shw:Sputw3181_0572 mitomycin resistance protein YP_002016683.1 TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pin:Ping_2901 L-2-haloalkanoic acid dehalogenase, HAD superfamily protein YP_002016684.1 light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production YP_002016685.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_002016686.1 light-independent reduction of protochlorophyllide to form chlorophyllide a YP_002016687.1 PFAM: protein of unknown function DUF77; KEGG: cte:CT2153 hypothetical protein YP_002016688.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002016689.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002016690.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002016691.1 PFAM: Nucleotidyl transferase; KEGG: cph:Cpha266_2393 mannose-1-phosphate guanylyltransferase (GDP) YP_002016692.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002016693.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002016694.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002016695.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002016696.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002016697.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002016698.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002016699.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002016700.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: cph:Cpha266_2402 methionine aminopeptidase, type I YP_002016701.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002016702.1 late assembly protein YP_002016703.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002016704.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002016705.1 binds 5S rRNA along with protein L5 and L25 YP_002016706.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002016707.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002016708.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_002016709.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002016710.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002016711.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002016712.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002016713.1 one of the stabilizing components for the large ribosomal subunit YP_002016714.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002016715.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002016716.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002016717.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002016718.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002016719.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002016720.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002016721.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002016722.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002016723.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002016724.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002016725.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002016726.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002016728.1 KEGG: plt:Plut_0174 hypothetical protein YP_002016729.1 KEGG: cph:Cpha266_2437 hypothetical protein YP_002016730.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cch:Cag_1862 polysaccharide efflux transporter YP_002016731.1 PFAM: glycosyl transferase family 2; KEGG: cph:Cpha266_2441 glycosyl transferase, family 2 YP_002016732.1 PFAM: glycosyl transferase group 1; KEGG: cph:Cpha266_2442 glycosyl transferase, group 1 YP_002016733.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cph:Cpha266_2443 phosphotransferase system, phosphocarrier protein HPr YP_002016734.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_002016735.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002016736.1 PFAM: Exonuclease VII small subunit; KEGG: cph:Cpha266_2446 exodeoxyribonuclease VII small subunit YP_002016737.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002016738.1 KEGG: pvi:Cvib_0228 hypothetical protein YP_002016739.1 PFAM: AAA ATPase central domain protein; Clp domain protein; SMART: AAA ATPase; KEGG: cph:Cpha266_2449 AAA ATPase, central domain protein YP_002016740.1 PFAM: ferredoxin-dependent glutamate synthase; Rieske [2Fe-2S] domain protein; KEGG: jan:Jann_3121 ferredoxin-dependent glutamate synthase YP_002016741.1 KEGG: cte:CT2280 hypothetical protein YP_002016742.1 PFAM: von Willebrand factor type A; KEGG: cte:CT2279 hypothetical protein YP_002016743.1 PFAM: von Willebrand factor type A; KEGG: cph:Cpha266_2452 von Willebrand factor, type A YP_002016744.1 KEGG: cph:Cpha266_2453 hypothetical protein YP_002016745.1 PFAM: protein of unknown function DUF58; KEGG: cph:Cpha266_2454 protein of unknown function DUF58 YP_002016746.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: cph:Cpha266_2455 ATPase associated with various cellular activities, AAA_3 YP_002016747.1 KEGG: cph:Cpha266_2456 hypothetical protein YP_002016748.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002016749.1 KEGG: cph:Cpha266_0755 catalase/peroxidase HPI YP_002016750.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: cph:Cpha266_1376 addiction module toxin, RelE/StbE family YP_002016751.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: cph:Cpha266_1377 transcriptional regulator, CopG family YP_002016752.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rpc:RPC_1039 filamentation induced by cAMP protein Fic YP_002016753.1 PFAM: Integrase catalytic region; KEGG: plt:Plut_1855 conserved hypothetical transposase YP_002016756.1 KEGG: ana:all3488 unknown protein YP_002016757.1 PFAM: Radical SAM domain protein; KEGG: mgi:Mflv_5060 radical SAM domain protein YP_002016758.1 PFAM: Integrase catalytic region; KEGG: pvi:Cvib_1308 integrase, catalytic region YP_002016759.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pvi:Cvib_0153 RNA-directed DNA polymerase YP_002016760.1 PFAM: transposase IS3/IS911 family protein; KEGG: pvi:Cvib_1307 transposase IS3/IS911 family protein YP_002016761.1 PFAM: protein of unknown function DUF87; SMART: AAA ATPase; KEGG: aae:aq_1852 hypothetical protein YP_002016762.1 KEGG: dps:DP2035 similar to Mrr restriction system protein YP_002016763.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mag:amb2384 peptidyl-prolyl cis-trans isomerase YP_002016764.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: cph:Cpha266_2458 protein translocase subunit YajC YP_002016765.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002016766.1 KEGG: cch:Cag_0105 hypothetical protein YP_002016767.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cte:CT0072 BchE/P-methylase family protein YP_002016768.1 PFAM: cytochrome c class I; KEGG: pvi:Cvib_0220 cytochrome c, class I YP_002016769.1 PFAM: cytochrome c class I; KEGG: pvi:Cvib_0219 cytochrome c, class I YP_002016770.1 KEGG: cte:CT0076 hypothetical protein YP_002016771.1 KEGG: cph:Cpha266_2466 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: oxidoreductase domain protein; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_002016772.1 KEGG: cte:CT0078 hypothetical protein YP_002016773.1 PFAM: molybdopterin biosynthesis MoaE protein; KEGG: pab:PAB0110 molybdopterin converting factor, subunit 2 YP_002016774.1 PFAM: thiamineS protein; KEGG: cau:Caur_1871 molybdopterin converting factor, subunit 1 YP_002016775.1 TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cte:CT1331 molybdopterin biosynthesis protein MoeA YP_002016776.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002016777.1 KEGG: cph:Cpha266_0734 GTP cyclohydrolase subunit MoaA; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB YP_002016778.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: cph:Cpha266_2470 glycerophosphoryl diester phosphodiesterase YP_002016779.1 KEGG: cph:Cpha266_2471 hypothetical protein YP_002016780.1 KEGG: cte:CT0080 hypothetical protein YP_002016781.1 KEGG: cch:Cag_1677 Ric1 protein YP_002016782.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; MobB is not essential but has been found to interact with multiple proteins involved in the molybdopterin guanine dinucleotide cofactor biosynthesis pathway YP_002016783.1 PFAM: UspA domain protein; KEGG: pvi:Cvib_0209 UspA domain protein YP_002016784.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002016785.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit E; PFAM: RnfA-Nqr electron transport subunit; KEGG: pin:Ping_0750 Na(+)-translocating NADH-quinone reductase subunit E YP_002016786.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: vvy:VV2587 Na(+)-translocating NADH-quinone reductase subunit D YP_002016787.1 TIGRFAM: NADH:ubiquinone oxidoreductase, subunit C; PFAM: FMN-binding domain protein; KEGG: csa:Csal_1571 Na(+)-translocating NADH-quinone reductase subunit C YP_002016788.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002016789.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_002016790.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cch:Cag_0620 twin-arginine translocation pathway signal YP_002016791.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cph:Cpha266_2563 4Fe-4S ferredoxin, iron-sulfur binding domain protein YP_002016792.1 PFAM: Polysulphide reductase NrfD; KEGG: cph:Cpha266_2564 polysulphide reductase, NrfD YP_002016793.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cph:Cpha266_2365 short-chain dehydrogenase/reductase SDR YP_002016794.1 KEGG: dol:Dole_0898 hypothetical protein YP_002016796.1 KEGG: hch:HCH_01988 probable phage protein YP_002016797.1 KEGG: hch:HCH_10007 threonine efflux protein YP_002016798.1 KEGG: hch:HCH_01987 probable phage protein YP_002016801.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein YP_002016803.1 PFAM: glutamine amidotransferase class-I; KEGG: cya:CYA_0959 glutamine amidotransferase, class I YP_002016805.1 PFAM: SOUL heme-binding protein; KEGG: cte:CT1119 hypothetical protein YP_002016806.1 PFAM: conserved hypothetical protein; KEGG: bfs:BF2337 hypothetical protein YP_002016807.1 KEGG: smu:SMU.591c hypothetical protein YP_002016808.1 PFAM: cytochrome B561; KEGG: plt:Plut_1198 hydrogenase, b-type cytochrome subunit YP_002016809.1 KEGG: pvi:Cvib_0760 cytochrome c family protein YP_002016810.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cph:Cpha266_2569 sulfide-quinone reductase YP_002016811.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cph:Cpha266_2570 Holliday junction resolvase YqgF YP_002016812.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002016813.1 PFAM: Prephenate dehydrogenase; KEGG: cph:Cpha266_2572 prephenate dehydrogenase YP_002016814.1 PFAM: ATP-NAD/AcoX kinase; KEGG: plt:Plut_2050 NAD(+) kinase YP_002016815.1 KEGG: cph:Cpha266_2574 hypothetical protein YP_002016816.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT1695 TPR repeat YP_002016817.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: cph:Cpha266_2575 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family YP_002016818.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_002016819.1 PFAM: ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: plt:Plut_2054 ATPase YP_002016821.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: cte:CT0090 glycosyl hydrolase, family 3 YP_002016822.1 PFAM: Phosphoglycerate mutase; KEGG: cph:Cpha266_2579 phosphohistidine phosphatase, SixA YP_002016823.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002016824.1 PFAM: protein of unknown function DUF205; KEGG: cph:Cpha266_2581 acyl-phosphate glycerol-3-phosphate acyltransferase YP_002016825.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002016826.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_002016827.1 PFAM: NLP/P60 protein; KEGG: cph:Cpha266_2584 NLP/P60 protein YP_002016828.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002016829.1 PFAM: Ppx/GppA phosphatase; KEGG: plt:Plut_2062 exopolyphosphatase YP_002016830.1 KEGG: cch:Cag_0884 Fibrobacter succinogenes major paralogous domain YP_002016831.1 KEGG: cph:Cpha266_2587 hypothetical protein YP_002016832.1 PFAM: Jacalin-related lectin; KEGG: ppp:PHYPADRAFT_169186 hypothetical protein Pfam: Jacalin GTP1_OBG YP_002016833.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: plt:Plut_0330 uridine kinase-like YP_002016834.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: cte:CT0047 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_002016835.1 TIGRFAM: dethiobiotin synthase; KEGG: cch:Cag_0082 dithiobiotin synthetase YP_002016836.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cte:CT0049 biotin synthesis protein YP_002016837.1 PFAM: protein of unknown function DUF452; KEGG: cph:Cpha266_0114 protein of unknown function DUF452 YP_002016838.1 PFAM: aminotransferase class I and II; KEGG: cph:Cpha266_0113 8-amino-7-oxononanoate synthase YP_002016839.1 KEGG: cte:CT0052 biotin synthetase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_002016840.1 KEGG: cph:Cpha266_0111 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein YP_002016842.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; KEGG: cph:Cpha266_1801 integral membrane sensor hybrid histidine kinase YP_002016843.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bba:Bd3071 regulatory protein YP_002016844.1 alkyl hydroperoxidase; catalyze the reduction of hydrogen peroxide to water and the reduction of alkyl hydroperoxides to the corresponding alcohols YP_002016845.1 PFAM: Ferritin Dps family protein; KEGG: plt:Plut_0582 bacterioferritin YP_002016846.1 PFAM: Rubrerythrin; KEGG: cte:CT1327 rubrerythrin YP_002016847.1 PFAM: ferric-uptake regulator; KEGG: plt:Plut_0584 ferric uptake regulator, FUR family YP_002016848.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein YP_002016849.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: pvi:Cvib_0129 DNA-directed DNA polymerase YP_002016850.1 PFAM: peptidase S24 and S26 domain protein; KEGG: pvi:Cvib_0128 prophage repressor YP_002016852.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: cch:Cag_0744 type I secretion outer membrane protein, TolC YP_002016853.1 PFAM: secretion protein HlyD family protein; KEGG: plt:Plut_0681 metalloprotease secretion protein YP_002016854.1 KEGG: plt:Plut_0680 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_002016855.1 KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase YP_002016856.1 PFAM: Alkaline phosphatase; KEGG: cch:Cag_0406 alkaline phosphatase YP_002016858.1 KEGG: mac:MA0506 hypothetical protein YP_002016859.1 KEGG: mem:Memar_0122 hypothetical protein YP_002016860.1 PFAM: cell wall hydrolase/autolysin; KEGG: cte:CT0054 N-acetylmuramoyl-L-alanine amidase YP_002016861.1 KEGG: cte:CT0055 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein YP_002016862.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: cph:Cpha266_0108 ferrous iron transport protein B YP_002016863.1 PFAM: FeoA family protein; KEGG: plt:Plut_2075 ferrous iron transport protein A YP_002016864.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: cph:Cpha266_0106 aconitase YP_002016865.1 PFAM: histidine triad (HIT) protein; KEGG: cph:Cpha266_0105 histidine triad (HIT) protein YP_002016867.1 PFAM: cyclase family protein; KEGG: cph:Cpha266_0103 cyclase family protein YP_002016868.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_002016869.1 KEGG: cph:Cpha266_2688 hypothetical protein YP_002016870.1 KEGG: cph:Cpha266_2689 hypothetical protein YP_002016871.1 KEGG: cph:Cpha266_2690 hypothetical protein YP_002016872.1 KEGG: cph:Cpha266_2691 hypothetical protein YP_002016873.1 KEGG: cph:Cpha266_2692 hypothetical protein YP_002016874.1 PFAM: Alkaline phosphatase; KEGG: cph:Cpha266_2693 alkaline phosphatase YP_002016875.1 KEGG: cte:CT2270 hypothetical protein YP_002016876.1 PFAM: alpha/beta hydrolase fold; KEGG: pvi:Cvib_1726 alpha/beta hydrolase fold YP_002016877.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: cph:Cpha266_2697 rare lipoprotein A YP_002016878.1 PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sru:SRU_2183 6-O-methylguanine DNA methyltransferase family protein YP_002016879.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002016880.1 KEGG: lch:Lcho_3187 tetratricopeptide TPR_2 repeat protein YP_002016881.1 KEGG: nfa:nfa28820 hypothetical protein YP_002016882.1 PFAM: protein of unknown function DUF323; SMART: TIR protein; KEGG: cph:Cpha266_0902 protein of unknown function DUF323 YP_002016884.1 transforms a conserved lysine residue of initiation factor 5A into deoxyhypusine YP_002016885.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002016886.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cte:CT0014 hydrolase, haloacid dehalogenase-like family YP_002016887.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002016888.1 KEGG: cte:CT0016 nicotinate-nucleotide adenyltransferase, TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_002016889.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: cte:CT0017 lipoprotein YP_002016890.1 KEGG: cph:Cpha266_2705 hypothetical protein YP_002016891.1 KEGG: cte:CT1007 hypothetical protein YP_002016892.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002016893.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002016894.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: plt:Plut_2097 ATP synthase F0, C subunit YP_002016895.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit A is part of the membrane proton channel F0 YP_002016896.1 KEGG: plt:Plut_2099 hypothetical protein YP_002016897.1 KEGG: plt:Plut_2100 hypothetical protein YP_002016898.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: plt:Plut_0420 UDP-glucose 4-epimerase YP_002016899.1 PFAM: protein of unknown function DUF152; KEGG: cph:Cpha266_2712 protein of unknown function DUF152 YP_002016900.1 KEGG: cte:CT0027 hypothetical protein YP_002016901.1 TIGRFAM: C-20 methyltransferase BchU; PFAM: O-methyltransferase family 2; KEGG: cph:Cpha266_2714 O-methyltransferase, family 2 YP_002016902.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: cte:CT0029 4-hydroxybutyrate coenzyme A transferase YP_002016903.1 KEGG: sru:SRU_0485 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase YP_002016904.1 KEGG: sru:SRU_0486 succinate dehydrogenase, membrane subunit YP_002016905.1 TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sru:SRU_0487 succinate dehydrogenase membrane subunit YP_002016906.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002016907.1 PFAM: cell division protein FtsA; KEGG: cch:Cag_0058 cell division protein FtsA YP_002016908.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: cte:CT0032 FtsQ protein YP_002016909.1 KEGG: pth:PTH_1859 UDP-N-acetylmuramate dehydrogenase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_002016910.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002016911.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002016912.1 PFAM: cell cycle protein; KEGG: cte:CT0035 cell division protein, FtsW/RodA/SpoVE family YP_002016913.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0036 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_002016914.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002016915.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cte:CT0038 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase YP_002016916.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: plt:Plut_2115 UDP-N-acetylmuramyl-tripeptide synthetase YP_002016917.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cte:CT0040 penicillin-binding protein 3 YP_002016918.1 KEGG: cte:CT0041 hypothetical protein YP_002016919.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: plt:Plut_2118 methyltransferase YP_002016920.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_002016921.1 KEGG: pvi:Cvib_1763 hypothetical protein YP_002016922.1 PFAM: Chorismate mutase; KEGG: cch:Cag_0046 chorismate mutase YP_002016923.1 PFAM: aminodeoxychorismate lyase; KEGG: cte:CT2223 hypothetical protein YP_002016924.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002016925.1 PFAM: Rhomboid family protein; KEGG: cph:Cpha266_2735 rhomboid family protein YP_002016926.1 PFAM: protein of unknown function DUF1232; KEGG: cte:CT2220 hypothetical protein YP_002016927.1 PFAM: protein of unknown function Spy-related; KEGG: cch:Cag_0471 hypothetical protein YP_002016928.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: bha:BH0684 prepro-alkaline protease YP_002016929.1 PFAM: peptidase M24; KEGG: fal:FRAAL3739 methionine aminopeptidase (MAP) (peptidase M) YP_002016930.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_3996 tetratricopeptide TPR_2 YP_002016931.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ppd:Ppro_2577 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase YP_002016932.1 PFAM: Radical SAM domain protein; KEGG: bca:BCE_3221 radical SAM domain protein YP_002016935.1 PFAM: aldo/keto reductase; KEGG: hau:Haur_1797 aldo/keto reductase YP_002016939.1 PFAM: thiol-disulphide oxidoreductase DCC; KEGG: cph:Cpha266_2114 thiol-disulphide oxidoreductase DCC YP_002016940.1 PFAM: TonB-dependent receptor; KEGG: nis:NIS_1621 TonB-dependent copper receptor YP_002016941.1 PFAM: ferric-uptake regulator; KEGG: ttj:TTHA1292 metal uptake regulation protein YP_002016942.1 KEGG: cph:Cpha266_1232 PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_002016943.1 PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein YP_002016945.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: rfr:Rfer_4037 filamentation induced by cAMP protein Fic YP_002016947.1 SMART: WD-40 repeat protein; KEGG: ter:Tery_2471 peptidase C14, caspase catalytic subunit P20 YP_002016948.1 KEGG: cth:Cthe_2458 hypothetical protein YP_002016949.1 KEGG: rfr:Rfer_4037 filamentation induced by cAMP protein Fic YP_002016950.1 KEGG: pca:Pcar_1381 integrase YP_002016951.1 PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4608 transposase IS3/IS911 family protein YP_002016952.1 PFAM: Integrase catalytic region; KEGG: det:DET0166 ISDet2, transposase orfB YP_002016953.1 PFAM: transposase IS3/IS911 family protein; KEGG: cph:Cpha266_1646 transposase IS3/IS911 family protein YP_002016954.1 PFAM: transposase IS3/IS911 family protein; KEGG: oan:Oant_4608 transposase IS3/IS911 family protein YP_002016955.1 PFAM: Integrase catalytic region; KEGG: det:DET0166 ISDet2, transposase orfB YP_002016956.1 PFAM: UvrD/REP helicase; KEGG: bte:BTH_I1443 superfamily I DNA and RNA helicases YP_002016957.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: rpc:RPC_4309 DNA-cytosine methyltransferase YP_002016958.1 KEGG: eli:ELI_03835 hypothetical protein YP_002016959.1 KEGG: hha:Hhal_0761 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_002016960.1 KEGG: slo:Shew_2745 hypothetical protein YP_002016961.1 PFAM: transposase IS3/IS911 family protein; KEGG: pvi:Cvib_1307 transposase IS3/IS911 family protein YP_002016962.1 PFAM: Integrase catalytic region; KEGG: pvi:Cvib_1308 integrase, catalytic region YP_002016963.1 KEGG: lch:Lcho_3128 response regulator receiver protein YP_002016964.1 PFAM: FRG domain protein YP_002016965.1 KEGG: hha:Hhal_0761 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein YP_002016966.1 KEGG: cph:Cpha266_2162 hypothetical protein YP_002016967.1 KEGG: cph:Cpha266_1424 nitroreductase YP_002016968.1 PFAM: cyclase/dehydrase; KEGG: rha:RHA1_ro06717 hypothetical protein YP_002016969.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_002016970.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: RNA methylase; deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: cte:CT0009 RNA methyltransferase, TrmA family YP_002016971.1 PFAM: ROK family protein; KEGG: cph:Cpha266_2738 N-acetylglucosamine kinase YP_002016972.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: plt:Plut_2128 phosphoesterase, PA-phosphatase related YP_002016973.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: pvi:Cvib_1771 protein translocase subunit YidC YP_002016974.1 PFAM: protein of unknown function DUF37; KEGG: cch:Cag_2031 protein of unknown function DUF37 YP_002016975.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002016976.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002019684.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_2377 chromosome segregation ATPase YP_002019687.1 KEGG: mes:Meso_0519 conjugal transfer protein precursor YP_002019688.1 KEGG: rme:Rmet_1489 hypothetical protein YP_002019689.1 type IV secretion VirD4 coupling protein family YP_002019690.1 KEGG: gdi:GDI1022 hypothetical protein YP_002019691.1 TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: swi:Swit_3691 P-type conjugative transfer ATPase TrbB YP_002019692.1 PFAM: Conjugal transfer protein TrbC; KEGG: cak:Caul_2028 conjugal transfer protein TrbC YP_002019693.1 PFAM: type IV secretory pathway VirB3 family protein; KEGG: oan:Oant_3214 conjugal transfer protein TrbB YP_002019694.1 type IV secretion system VirB4 family YP_002019695.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: rpa:RPA4120 possible conjugal transfer protein TrbJ YP_002019697.1 TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bbt:BBta_7446 conjugal transfer protein TrbL YP_002019698.1 PFAM: Conjugal transfer protein; KEGG: bam:Bamb_2011 conjugal transfer protein YP_002019699.1 TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: rpa:RPA2225 probable conjugal transfer protein TrbG YP_002019700.1 PFAM: conjugation TrbI family protein; KEGG: rme:Rmet_1350 conjugation TrbI-like protein YP_002019701.1 KEGG: cph:Cpha266_0632 hypothetical protein YP_002019702.1 KEGG: cyt:cce_5304 hypothetical protein YP_002019706.1 PFAM: protein of unknown function DUF159; KEGG: gsu:GSU0040 hypothetical protein YP_002019708.1 PFAM: domain of unknown function DUF1738; KEGG: cph:Cpha266_0639 domain of unknown function DUF1738 YP_002019710.1 KEGG: bur:Bcep18194_C7449 histone-like nucleoid-structuring protein H-NS YP_002019711.1 KEGG: gfo:GFO_2577 hypothetical protein YP_002019712.1 PFAM: AAA-4 family protein; KEGG: mmz:MmarC7_1786 putative transcriptional regulator YP_002019713.1 KEGG: dol:Dole_2932 nuclease (SNase domain protein) YP_002019717.1 PFAM: Radical SAM domain protein; KEGG: dsy:DSY0170 hypothetical protein YP_002019718.1 PFAM: protein of unknown function nitrogen fixation; KEGG: dsy:DSY0169 hypothetical protein YP_002019719.1 PFAM: DNA repair protein RadC; KEGG: cph:Cpha266_1619 DNA repair protein RadC YP_002019723.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: pvi:Cvib_0129 DNA-directed DNA polymerase YP_002019724.1 KEGG: cch:Cag_1709 hypothetical protein YP_002019725.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: TIR protein; Tetratricopeptide domain protein; KEGG: mba:Mbar_A3708 hypothetical protein YP_002019726.1 PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: hit:NTHI0142 transposon Tn3 resolvase YP_002019727.1 KEGG: hne:HNE_0284 hypothetical protein YP_002019729.1 PFAM: protein of unknown function DUF323; KEGG: mac:MA4278 hypothetical protein YP_002019731.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: ana:alr3497 hypothetical protein YP_002019732.1 KEGG: ana:alr3496 unknown protein YP_002019733.1 PFAM: HRDC domain protein; KEGG: swi:Swit_1914 ATP-dependent DNA helicase RecQ YP_002019734.1 PFAM: protein of unknown function DUF323; KEGG: har:HEAR1630 hypothetical protein YP_002019735.1 PFAM: Resolvase domain; KEGG: plt:Plut_0854 invertase/recombinase like protein YP_002019737.1 KEGG: hch:HCH_06325 hypothetical protein YP_002019739.1 PFAM: restriction modification system DNA specificity domain; KEGG: gfo:GFO_0679 type I restriction-modification system DNA specificity subunit YP_002019740.1 KEGG: mgm:Mmc1_0134 type I site-specific deoxyribonuclease, HsdR family; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases YP_002019742.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1453 TPR repeat YP_002019744.1 KEGG: stm:PSLT048 alpha-helical coiled-coil protein YP_002019745.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: asa:ASA_pAsa301 antitoxin YP_002019746.1 PFAM: plasmid encoded RepA protein; KEGG: rme:Rmet_2825 plasmid encoded RepA protein