-- dump date 20140620_005737 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001185508.1 146305043 5105694 82..1566 1 NC_009439.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1566 dnaA 5105694 dnaA Pseudomonas mendocina ymp chromosomal replication initiation protein YP_001185508.1 82 D 399739 CDS YP_001185509.1 146305044 5106313 1601..2704 1 NC_009439.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2704 5106313 Pmen_0002 Pseudomonas mendocina ymp DNA polymerase III subunit beta YP_001185509.1 1601 D 399739 CDS YP_001185510.1 146305045 5106678 2712..3815 1 NC_009439.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3815 recF 5106678 recF Pseudomonas mendocina ymp recombination protein F YP_001185510.1 2712 D 399739 CDS YP_001185511.1 146305046 5106679 3820..6240 1 NC_009439.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6240 gyrB 5106679 gyrB Pseudomonas mendocina ymp DNA gyrase subunit B YP_001185511.1 3820 D 399739 CDS YP_001185512.1 146305047 5106680 complement(6506..7438) 1 NC_009439.1 PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 7438 5106680 Pmen_0005 Pseudomonas mendocina ymp phosphatidate cytidylyltransferase YP_001185512.1 6506 R 399739 CDS YP_001185513.1 146305048 5106681 complement(7440..8063) 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 8063 5106681 Pmen_0006 Pseudomonas mendocina ymp phospholipid/glycerol acyltransferase YP_001185513.1 7440 R 399739 CDS YP_001185514.1 146305049 5106682 complement(8073..8507) 1 NC_009439.1 hypothetical protein 8507 5106682 Pmen_0007 Pseudomonas mendocina ymp hypothetical protein YP_001185514.1 8073 R 399739 CDS YP_001185515.1 146305050 5106683 complement(8497..9834) 1 NC_009439.1 PFAM: phosphoesterase, PA-phosphatase related; Dual specificity protein phosphatase; dual specificity protein phosphatase 9834 5106683 Pmen_0008 Pseudomonas mendocina ymp dual specificity protein phosphatase YP_001185515.1 8497 R 399739 CDS YP_001185516.1 146305051 5106684 complement(9834..11588) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 11588 5106684 Pmen_0009 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001185516.1 9834 R 399739 CDS YP_001185517.1 146305052 5106685 complement(11614..12219) 1 NC_009439.1 PFAM: CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 12219 5106685 Pmen_0010 Pseudomonas mendocina ymp CDP-alcohol phosphatidyltransferase YP_001185517.1 11614 R 399739 CDS YP_001185518.1 146305053 5106686 complement(12430..13197) 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 13197 5106686 Pmen_0011 Pseudomonas mendocina ymp phospholipid/glycerol acyltransferase YP_001185518.1 12430 R 399739 CDS YP_001185519.1 146305054 5106687 complement(13211..13741) 1 NC_009439.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 13741 5106687 Pmen_0012 Pseudomonas mendocina ymp D,D-heptose 1,7-bisphosphate phosphatase YP_001185519.1 13211 R 399739 CDS YP_001185520.1 146305055 5106688 complement(13811..15865) 1 NC_009439.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 15865 glyS 5106688 glyS Pseudomonas mendocina ymp glycyl-tRNA synthetase subunit beta YP_001185520.1 13811 R 399739 CDS YP_001185521.1 146305056 5106689 complement(15862..16809) 1 NC_009439.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 16809 glyQ 5106689 glyQ Pseudomonas mendocina ymp glycyl-tRNA synthetase subunit alpha YP_001185521.1 15862 R 399739 CDS YP_001185522.1 146305057 5106690 17057..17623 1 NC_009439.1 TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 17623 5106690 Pmen_0015 Pseudomonas mendocina ymp DNA-3-methyladenine glycosylase I YP_001185522.1 17057 D 399739 CDS YP_001185523.2 162286125 5106691 17717..18604 1 NC_009439.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 18604 5106691 Pmen_0016 Pseudomonas mendocina ymp lipid A biosynthesis lauroyl acyltransferase YP_001185523.2 17717 D 399739 CDS YP_001185524.1 146305059 5106692 18721..18987 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 18987 5106692 Pmen_0017 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001185524.1 18721 D 399739 CDS YP_001185525.1 146305060 5106693 19365..19931 1 NC_009439.1 PFAM: NLP/P60 protein; NLP/P60 protein 19931 5106693 Pmen_0018 Pseudomonas mendocina ymp NLP/P60 protein YP_001185525.1 19365 D 399739 CDS YP_001185526.1 146305061 5106694 20108..20545 1 NC_009439.1 PFAM: Tir chaperone family protein; TIR chaperone family protein 20545 5106694 Pmen_0019 Pseudomonas mendocina ymp TIR chaperone family protein YP_001185526.1 20108 D 399739 CDS YP_001185527.1 146305062 5106695 20545..22776 1 NC_009439.1 hypothetical protein 22776 5106695 Pmen_0020 Pseudomonas mendocina ymp hypothetical protein YP_001185527.1 20545 D 399739 CDS YP_001185528.1 146305063 5106696 complement(22972..23322) 1 NC_009439.1 hypothetical protein 23322 5106696 Pmen_0021 Pseudomonas mendocina ymp hypothetical protein YP_001185528.1 22972 R 399739 CDS YP_001185529.1 146305064 5106697 complement(23325..23528) 1 NC_009439.1 hypothetical protein 23528 5106697 Pmen_0022 Pseudomonas mendocina ymp hypothetical protein YP_001185529.1 23325 R 399739 CDS YP_001185530.1 146305065 5106698 complement(23528..25618) 1 NC_009439.1 TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; YscC/HrcC family type III secretion outer membrane protein 25618 5106698 Pmen_0023 Pseudomonas mendocina ymp YscC/HrcC family type III secretion outer membrane protein YP_001185530.1 23528 R 399739 CDS YP_001185531.1 146305066 5106699 complement(25620..26045) 1 NC_009439.1 hypothetical protein 26045 5106699 Pmen_0024 Pseudomonas mendocina ymp hypothetical protein YP_001185531.1 25620 R 399739 CDS YP_001185532.1 146305067 5106700 complement(26032..26256) 1 NC_009439.1 hypothetical protein 26256 5106700 Pmen_0025 Pseudomonas mendocina ymp hypothetical protein YP_001185532.1 26032 R 399739 CDS YP_001185533.1 146305068 5106701 complement(26417..27004) 1 NC_009439.1 TIGRFAM: type III secretion apparatus protein, HrpE/YscL family; PFAM: HrpE family protein; HrpE/YscL family type III secretion apparatus protein 27004 5106701 Pmen_0026 Pseudomonas mendocina ymp HrpE/YscL family type III secretion apparatus protein YP_001185533.1 26417 R 399739 CDS YP_001185534.1 146305069 5106702 complement(26994..27527) 1 NC_009439.1 hypothetical protein 27527 5106702 Pmen_0027 Pseudomonas mendocina ymp hypothetical protein YP_001185534.1 26994 R 399739 CDS YP_001185535.1 146305070 5106703 complement(27524..28342) 1 NC_009439.1 TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; YscJ/HrcJ family type III secretion apparatus lipoprotein 28342 5106703 Pmen_0028 Pseudomonas mendocina ymp YscJ/HrcJ family type III secretion apparatus lipoprotein YP_001185535.1 27524 R 399739 CDS YP_001185536.1 146305071 5106704 complement(28353..28721) 1 NC_009439.1 TIGRFAM: type III secretion apparatus protein, YscI/HrpB family; YscI/HrpB family type III secretion apparatus protein 28721 5106704 Pmen_0029 Pseudomonas mendocina ymp YscI/HrpB family type III secretion apparatus protein YP_001185536.1 28353 R 399739 CDS YP_001185537.1 146305072 5106705 complement(28765..29664) 1 NC_009439.1 PFAM: HrpZ family protein; HrpZ family protein 29664 5106705 Pmen_0030 Pseudomonas mendocina ymp HrpZ family protein YP_001185537.1 28765 R 399739 CDS YP_001185538.1 146305073 5106706 complement(29716..30009) 1 NC_009439.1 hypothetical protein 30009 5106706 Pmen_0031 Pseudomonas mendocina ymp hypothetical protein YP_001185538.1 29716 R 399739 CDS YP_001185539.1 146305074 5106707 complement(30305..31210) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 31210 5106707 Pmen_0032 Pseudomonas mendocina ymp sigma-54 dependent trancsriptional regulator YP_001185539.1 30305 R 399739 CDS YP_001185540.1 146305075 5106708 complement(31594..32523) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 32523 5106708 Pmen_0033 Pseudomonas mendocina ymp sigma-54 dependent trancsriptional regulator YP_001185540.1 31594 R 399739 CDS YP_001185541.1 146305076 5106709 complement(32882..33268) 1 NC_009439.1 hypothetical protein 33268 5106709 Pmen_0034 Pseudomonas mendocina ymp hypothetical protein YP_001185541.1 32882 R 399739 CDS YP_001185542.1 146305077 5106934 complement(33458..35032) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 35032 5106934 Pmen_0036 Pseudomonas mendocina ymp transposase IS66 YP_001185542.1 33458 R 399739 CDS YP_001185543.1 146305078 5106711 complement(35052..35411) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 35411 5106711 Pmen_0037 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001185543.1 35052 R 399739 CDS YP_001185544.1 146305079 5106712 36171..37328 1 NC_009439.1 TIGRFAM: type III secretion effector delivery regulator, TyeA family; type III secretion regulator YopN/LcrE/InvE/MxiC; TyeA family type III secretion effector delivery regulator 37328 5106712 Pmen_0038 Pseudomonas mendocina ymp TyeA family type III secretion effector delivery regulator YP_001185544.1 36171 D 399739 CDS YP_001185545.1 146305080 5106713 37328..39412 1 NC_009439.1 TIGRFAM: type III secretion protein, HrcV family; PFAM: type III secretion FHIPEP protein; HrcV family type III secretion protein 39412 5106713 Pmen_0039 Pseudomonas mendocina ymp HrcV family type III secretion protein YP_001185545.1 37328 D 399739 CDS YP_001185546.1 146305081 5106714 39429..40343 1 NC_009439.1 TIGRFAM: type III secretion apparatus protein, YscD/HrpQ family; YscD/HrpQ family type III secretion apparatus protein 40343 5106714 Pmen_0040 Pseudomonas mendocina ymp YscD/HrpQ family type III secretion apparatus protein YP_001185546.1 39429 D 399739 CDS YP_001185547.1 146305082 5106715 40340..41698 1 NC_009439.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase; FliI/YscN family ATPase 41698 5106715 Pmen_0041 Pseudomonas mendocina ymp FliI/YscN family ATPase YP_001185547.1 40340 D 399739 CDS YP_001185548.1 146305083 5106716 41701..42147 1 NC_009439.1 hypothetical protein 42147 5106716 Pmen_0042 Pseudomonas mendocina ymp hypothetical protein YP_001185548.1 41701 D 399739 CDS YP_001185549.1 146305084 5106717 42137..42673 1 NC_009439.1 hypothetical protein 42673 5106717 Pmen_0043 Pseudomonas mendocina ymp hypothetical protein YP_001185549.1 42137 D 399739 CDS YP_001185550.1 146305085 5106718 42670..43386 1 NC_009439.1 hypothetical protein 43386 5106718 Pmen_0044 Pseudomonas mendocina ymp hypothetical protein YP_001185550.1 42670 D 399739 CDS YP_001185551.1 146305086 5106719 43376..43777 1 NC_009439.1 PFAM: surface presentation of antigens (SPOA) protein; surface presentation of antigens (SPOA) protein 43777 5106719 Pmen_0045 Pseudomonas mendocina ymp surface presentation of antigens (SPOA) protein YP_001185551.1 43376 D 399739 CDS YP_001185552.1 146305087 5106720 43774..44427 1 NC_009439.1 part of a set of proteins involved in the infection of eukaryotic cells; in plant pathogens involved in the hypersensitivity response; type III secretion system protein 44427 5106720 Pmen_0046 Pseudomonas mendocina ymp type III secretion system protein YP_001185552.1 43774 D 399739 CDS YP_001185553.1 146305088 5106721 44435..44698 1 NC_009439.1 TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3; HrpO family type III secretion protein 44698 5106721 Pmen_0047 Pseudomonas mendocina ymp HrpO family type III secretion protein YP_001185553.1 44435 D 399739 CDS YP_001185554.1 146305089 5106722 44699..45499 1 NC_009439.1 TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; type III secretion protein SpaR/YscT/HrcT 45499 5106722 Pmen_0048 Pseudomonas mendocina ymp type III secretion protein SpaR/YscT/HrcT YP_001185554.1 44699 D 399739 CDS YP_001185555.1 146305090 5106723 45496..46575 1 NC_009439.1 TIGRFAM: type III secretion protein, YscU/HrpY family; PFAM: type III secretion exporter; YscU/HrpY family type III secretion protein 46575 5106723 Pmen_0049 Pseudomonas mendocina ymp YscU/HrpY family type III secretion protein YP_001185555.1 45496 D 399739 CDS YP_001185556.1 146305091 5106724 46762..47412 1 NC_009439.1 TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; hypothetical protein 47412 5106724 Pmen_0050 Pseudomonas mendocina ymp hypothetical protein YP_001185556.1 46762 D 399739 CDS YP_001185557.1 146305092 5106725 complement(47452..47766) 1 NC_009439.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 47766 5106725 Pmen_0051 Pseudomonas mendocina ymp hypothetical protein YP_001185557.1 47452 R 399739 CDS YP_001185558.1 146305093 5106237 complement(47855..49228) 1 NC_009439.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 49228 trkA 5106237 trkA Pseudomonas mendocina ymp potassium transporter peripheral membrane protein YP_001185558.1 47855 R 399739 CDS YP_001185559.1 146305094 5106238 complement(49240..50553) 1 NC_009439.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; sun protein 50553 5106238 Pmen_0053 Pseudomonas mendocina ymp sun protein YP_001185559.1 49240 R 399739 CDS YP_001185560.1 146305095 5106239 complement(50550..51494) 1 NC_009439.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 51494 fmt 5106239 fmt Pseudomonas mendocina ymp methionyl-tRNA formyltransferase YP_001185560.1 50550 R 399739 CDS YP_001185561.1 146305096 5106240 complement(51547..52053) 1 NC_009439.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 52053 def 5106240 def Pseudomonas mendocina ymp peptide deformylase YP_001185561.1 51547 R 399739 CDS YP_001185562.1 146305097 5106241 52207..53244 1 NC_009439.1 PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM 53244 5106241 Pmen_0056 Pseudomonas mendocina ymp peptidoglycan-binding LysM YP_001185562.1 52207 D 399739 CDS YP_001185563.1 146305098 5106242 53331..54437 1 NC_009439.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA 54437 5106242 Pmen_0057 Pseudomonas mendocina ymp DNA protecting protein DprA YP_001185563.1 53331 D 399739 CDS YP_001185564.1 146305099 5106243 54504..55061 1 NC_009439.1 PFAM: SUA5/yciO/yrdC, N-terminal domain; SUA5/yciO/yrdC domain-containing protein 55061 5106243 Pmen_0058 Pseudomonas mendocina ymp SUA5/yciO/yrdC domain-containing protein YP_001185564.1 54504 D 399739 CDS YP_001185565.1 146305100 5106244 complement(55173..56150) 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 56150 5106244 Pmen_0059 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001185565.1 55173 R 399739 CDS YP_001185566.1 146305101 5106245 56295..57209 1 NC_009439.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 57209 5106245 Pmen_0060 Pseudomonas mendocina ymp coproporphyrinogen III oxidase YP_001185566.1 56295 D 399739 CDS YP_001185567.1 146305102 5106246 57317..58138 1 NC_009439.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 58138 aroE 5106246 aroE Pseudomonas mendocina ymp shikimate 5-dehydrogenase YP_001185567.1 57317 D 399739 CDS YP_001185568.1 146305103 5106247 complement(58342..59982) 1 NC_009439.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; sulfate transporter 59982 5106247 Pmen_0062 Pseudomonas mendocina ymp sulfate transporter YP_001185568.1 58342 R 399739 CDS YP_001185569.1 146305104 5106248 complement(60029..60949) 1 NC_009439.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 60949 5106248 Pmen_0063 Pseudomonas mendocina ymp glycine betaine ABC transporter substrate-binding protein YP_001185569.1 60029 R 399739 CDS YP_001185570.1 146305105 5106249 complement(60993..62501) 1 NC_009439.1 PFAM: sulfatase; sulfatase 62501 5106249 Pmen_0064 Pseudomonas mendocina ymp sulfatase YP_001185570.1 60993 R 399739 CDS YP_001185571.1 146305106 5106250 62616..63569 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 63569 5106250 Pmen_0065 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185571.1 62616 D 399739 CDS YP_001185572.1 146305107 5106251 63685..64587 1 NC_009439.1 specifically hydrolyze the DD-diaminopimelate-alanine bonds in high-molecular-mass murein sacculi; Penicillin-binding protein 7; D-alanyl-D-alanine endopeptidase 64587 pbpG 5106251 pbpG Pseudomonas mendocina ymp D-alanyl-D-alanine endopeptidase YP_001185572.1 63685 D 399739 CDS YP_001185573.1 146305108 5106252 complement(64684..65592) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 65592 5106252 Pmen_0067 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185573.1 64684 R 399739 CDS YP_001185574.1 146305109 5106253 65802..66605 1 NC_009439.1 PFAM: aldo/keto reductase; aldo/keto reductase 66605 5106253 Pmen_0068 Pseudomonas mendocina ymp aldo/keto reductase YP_001185574.1 65802 D 399739 CDS YP_001185575.1 146305110 5106254 complement(66677..67420) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 67420 5106254 Pmen_0069 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001185575.1 66677 R 399739 CDS YP_001185576.1 146305111 5106255 complement(67576..68385) 1 NC_009439.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 68385 trpA 5106255 trpA Pseudomonas mendocina ymp tryptophan synthase subunit alpha YP_001185576.1 67576 R 399739 CDS YP_001185577.1 146305112 5106256 complement(68382..69617) 1 NC_009439.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 69617 5106256 Pmen_0071 Pseudomonas mendocina ymp tryptophan synthase subunit beta YP_001185577.1 68382 R 399739 CDS YP_001185578.1 146305113 5106257 69732..70400 1 NC_009439.1 hypothetical protein 70400 5106257 Pmen_0072 Pseudomonas mendocina ymp hypothetical protein YP_001185578.1 69732 D 399739 CDS YP_001185579.1 146305114 5106258 70405..71316 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 71316 5106258 Pmen_0073 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185579.1 70405 D 399739 CDS YP_001185580.1 146305115 5106259 71370..71609 1 NC_009439.1 hypothetical protein 71609 5106259 Pmen_0074 Pseudomonas mendocina ymp hypothetical protein YP_001185580.1 71370 D 399739 CDS YP_001185581.1 146305116 5106260 71708..71923 1 NC_009439.1 PFAM: protein of unknown function DUF1458; hypothetical protein 71923 5106260 Pmen_0075 Pseudomonas mendocina ymp hypothetical protein YP_001185581.1 71708 D 399739 CDS YP_001185582.1 146305117 5106261 complement(71892..72869) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 72869 5106261 Pmen_0076 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001185582.1 71892 R 399739 CDS YP_001185583.1 146305118 5106262 73153..73734 1 NC_009439.1 hypothetical protein 73734 5106262 Pmen_0077 Pseudomonas mendocina ymp hypothetical protein YP_001185583.1 73153 D 399739 CDS YP_001185584.1 146305119 5106263 complement(73972..75201) 1 NC_009439.1 PFAM: nucleoside recognition domain protein; nucleoside recognition domain-containing protein 75201 5106263 Pmen_0078 Pseudomonas mendocina ymp nucleoside recognition domain-containing protein YP_001185584.1 73972 R 399739 CDS YP_001185585.1 146305120 5106264 complement(75366..75827) 1 NC_009439.1 hypothetical protein 75827 5106264 Pmen_0079 Pseudomonas mendocina ymp hypothetical protein YP_001185585.1 75366 R 399739 CDS YP_001185586.1 146305121 5106265 complement(75838..76002) 1 NC_009439.1 PFAM: protein of unknown function DUF1328; hypothetical protein 76002 5106265 Pmen_0080 Pseudomonas mendocina ymp hypothetical protein YP_001185586.1 75838 R 399739 CDS YP_001185587.1 146305122 5106266 complement(76022..76294) 1 NC_009439.1 hypothetical protein 76294 5106266 Pmen_0081 Pseudomonas mendocina ymp hypothetical protein YP_001185587.1 76022 R 399739 CDS YP_001185588.1 146305123 5106267 76571..76972 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 76972 5106267 Pmen_0082 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001185588.1 76571 D 399739 CDS YP_001185589.1 146305124 5106268 complement(77048..77680) 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 77680 5106268 Pmen_0083 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001185589.1 77048 R 399739 CDS YP_001185590.1 146305125 5106269 complement(77721..79070) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; Cache, type 2 domain protein; integral membrane sensor signal transduction histidine kinase 79070 5106269 Pmen_0084 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001185590.1 77721 R 399739 CDS YP_001185591.1 146305126 5106270 complement(79640..80740) 1 NC_009439.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 80740 5106270 Pmen_0085 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001185591.1 79640 R 399739 CDS YP_001185592.1 146305127 5106271 80925..81467 1 NC_009439.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 81467 5106271 Pmen_0086 Pseudomonas mendocina ymp tripartite ATP-independent periplasmic transporter DctQ YP_001185592.1 80925 D 399739 CDS YP_001185593.1 146305128 5106272 81460..82836 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 82836 5106272 Pmen_0087 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctM YP_001185593.1 81460 D 399739 CDS YP_001185594.1 146305129 5106273 82941..83843 1 NC_009439.1 PFAM: Aldose 1-epimerase; aldose 1-epimerase 83843 5106273 Pmen_0088 Pseudomonas mendocina ymp aldose 1-epimerase YP_001185594.1 82941 D 399739 CDS YP_001185595.1 146305130 5106274 84279..85841 1 NC_009439.1 PFAM: ImpA domain protein; ImpA domain-containing protein 85841 5106274 Pmen_0089 Pseudomonas mendocina ymp ImpA domain-containing protein YP_001185595.1 84279 D 399739 CDS YP_001185596.1 146305131 5106275 85896..86402 1 NC_009439.1 PFAM: uncharacterised conserved protein UCP028301; hypothetical protein 86402 5106275 Pmen_0090 Pseudomonas mendocina ymp hypothetical protein YP_001185596.1 85896 D 399739 CDS YP_001185597.1 146305132 5106276 86428..87906 1 NC_009439.1 PFAM: protein of unknown function DUF877; hypothetical protein 87906 5106276 Pmen_0091 Pseudomonas mendocina ymp hypothetical protein YP_001185597.1 86428 D 399739 CDS YP_001185598.1 146305133 5106277 87913..88341 1 NC_009439.1 PFAM: GPW/gp25 family protein; GPW/gp25 family protein 88341 5106277 Pmen_0092 Pseudomonas mendocina ymp GPW/gp25 family protein YP_001185598.1 87913 D 399739 CDS YP_001185599.1 146305134 5106278 88331..89776 1 NC_009439.1 hypothetical protein 89776 5106278 Pmen_0093 Pseudomonas mendocina ymp hypothetical protein YP_001185599.1 88331 D 399739 CDS YP_001185600.1 146305135 5106279 89769..90155 1 NC_009439.1 hypothetical protein 90155 5106279 Pmen_0094 Pseudomonas mendocina ymp hypothetical protein YP_001185600.1 89769 D 399739 CDS YP_001185601.1 146305136 5106280 90186..91976 1 NC_009439.1 PFAM: protein of unknown function DUF879; hypothetical protein 91976 5106280 Pmen_0095 Pseudomonas mendocina ymp hypothetical protein YP_001185601.1 90186 D 399739 CDS YP_001185602.1 146305137 5106281 91940..92947 1 NC_009439.1 PFAM: protein of unknown function DUF1305; hypothetical protein 92947 5106281 Pmen_0096 Pseudomonas mendocina ymp hypothetical protein YP_001185602.1 91940 D 399739 CDS YP_001185603.1 146305138 5106282 92959..95559 1 NC_009439.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 95559 5106282 Pmen_0097 Pseudomonas mendocina ymp ATPase YP_001185603.1 92959 D 399739 CDS YP_001185604.1 146305139 5106283 95546..97078 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; Fis family transcriptional regulator 97078 5106283 Pmen_0098 Pseudomonas mendocina ymp Fis family transcriptional regulator YP_001185604.1 95546 D 399739 CDS YP_001185605.1 146305140 5106284 97126..97260 1 NC_009439.1 hypothetical protein 97260 5106284 Pmen_0099 Pseudomonas mendocina ymp hypothetical protein YP_001185605.1 97126 D 399739 CDS YP_001185606.1 146305141 5106285 97281..98477 1 NC_009439.1 PFAM: Forkhead-associated protein; FHA domain-containing protein 98477 5106285 Pmen_0100 Pseudomonas mendocina ymp FHA domain-containing protein YP_001185606.1 97281 D 399739 CDS YP_001185607.1 146305142 5106286 98483..98965 1 NC_009439.1 hypothetical protein 98965 5106286 Pmen_0101 Pseudomonas mendocina ymp hypothetical protein YP_001185607.1 98483 D 399739 CDS YP_001185608.1 146305143 5106287 98962..100293 1 NC_009439.1 PFAM: protein of unknown function DUF876; hypothetical protein 100293 5106287 Pmen_0102 Pseudomonas mendocina ymp hypothetical protein YP_001185608.1 98962 D 399739 CDS YP_001185609.1 146305144 5106288 100296..101177 1 NC_009439.1 hypothetical protein 101177 5106288 Pmen_0103 Pseudomonas mendocina ymp hypothetical protein YP_001185609.1 100296 D 399739 CDS YP_001185610.1 146305145 5106289 101174..104713 1 NC_009439.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein 104713 5106289 Pmen_0104 Pseudomonas mendocina ymp ImcF domain-containing protein YP_001185610.1 101174 D 399739 CDS YP_001185611.1 146305146 5106290 104713..105441 1 NC_009439.1 PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; protein phosphatase 2C domain-containing protein 105441 5106290 Pmen_0105 Pseudomonas mendocina ymp protein phosphatase 2C domain-containing protein YP_001185611.1 104713 D 399739 CDS YP_001185612.1 146305147 5106291 105438..106409 1 NC_009439.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; protein kinase 106409 5106291 Pmen_0106 Pseudomonas mendocina ymp protein kinase YP_001185612.1 105438 D 399739 CDS YP_001185613.1 146305148 5106292 106434..108515 1 NC_009439.1 PFAM: Rhs element Vgr protein; Rhs element Vgr protein 108515 5106292 Pmen_0107 Pseudomonas mendocina ymp Rhs element Vgr protein YP_001185613.1 106434 D 399739 CDS YP_001185614.1 146305149 5106293 108566..111730 1 NC_009439.1 PFAM: glycoside hydrolase, family 19; glycoside hydrolase 111730 5106293 Pmen_0108 Pseudomonas mendocina ymp glycoside hydrolase YP_001185614.1 108566 D 399739 CDS YP_001185615.1 146305150 5106294 111727..112542 1 NC_009439.1 hypothetical protein 112542 5106294 Pmen_0109 Pseudomonas mendocina ymp hypothetical protein YP_001185615.1 111727 D 399739 CDS YP_001185616.1 146305151 5106295 112621..113043 1 NC_009439.1 hypothetical protein 113043 5106295 Pmen_0110 Pseudomonas mendocina ymp hypothetical protein YP_001185616.1 112621 D 399739 CDS YP_001185617.1 146305152 5106296 113171..113710 1 NC_009439.1 hypothetical protein 113710 5106296 Pmen_0111 Pseudomonas mendocina ymp hypothetical protein YP_001185617.1 113171 D 399739 CDS YP_001185618.1 146305153 5106297 113794..114204 1 NC_009439.1 PFAM: protein of unknown function DUF1311; hypothetical protein 114204 5106297 Pmen_0112 Pseudomonas mendocina ymp hypothetical protein YP_001185618.1 113794 D 399739 CDS YP_001185619.1 146305154 5106298 114401..115450 1 NC_009439.1 hypothetical protein 115450 5106298 Pmen_0113 Pseudomonas mendocina ymp hypothetical protein YP_001185619.1 114401 D 399739 CDS YP_001185620.1 146305155 5106299 complement(115461..115928) 1 NC_009439.1 hypothetical protein 115928 5106299 Pmen_0114 Pseudomonas mendocina ymp hypothetical protein YP_001185620.1 115461 R 399739 CDS YP_001185621.1 146305156 5106300 complement(115947..116483) 1 NC_009439.1 hypothetical protein 116483 5106300 Pmen_0115 Pseudomonas mendocina ymp hypothetical protein YP_001185621.1 115947 R 399739 CDS YP_001185622.1 146305157 5106301 complement(116572..116817) 1 NC_009439.1 PFAM: Transglycosylase-associated protein; transglycosylase-associated protein 116817 5106301 Pmen_0116 Pseudomonas mendocina ymp transglycosylase-associated protein YP_001185622.1 116572 R 399739 CDS YP_001185623.1 146305158 5106302 complement(116883..117647) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 117647 5106302 Pmen_0117 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001185623.1 116883 R 399739 CDS YP_001185624.1 146305159 5106303 complement(117703..118788) 1 NC_009439.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 118788 5106303 Pmen_0118 Pseudomonas mendocina ymp phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001185624.1 117703 R 399739 CDS YP_001185625.1 146305160 5106304 complement(118788..119279) 1 NC_009439.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 119279 5106304 Pmen_0119 Pseudomonas mendocina ymp phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001185625.1 118788 R 399739 CDS YP_001185626.1 146305161 5106305 119556..120578 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 120578 5106305 Pmen_0120 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001185626.1 119556 D 399739 CDS YP_001185627.1 146305162 5106306 120683..121477 1 NC_009439.1 hypothetical protein 121477 5106306 Pmen_0121 Pseudomonas mendocina ymp hypothetical protein YP_001185627.1 120683 D 399739 CDS YP_001185628.1 146305163 5106307 121557..122549 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 122549 5106307 Pmen_0122 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001185628.1 121557 D 399739 CDS YP_001185629.1 146305164 5106308 123150..124178 1 NC_009439.1 PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 124178 5106308 Pmen_0123 Pseudomonas mendocina ymp histone deacetylase superfamily protein YP_001185629.1 123150 D 399739 CDS YP_001185630.1 146305165 5106309 124242..125336 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 125336 5106309 Pmen_0124 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185630.1 124242 D 399739 CDS YP_001185631.1 146305166 5106310 complement(125368..126345) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; transcriptional regulator 126345 5106310 Pmen_0125 Pseudomonas mendocina ymp transcriptional regulator YP_001185631.1 125368 R 399739 CDS YP_001185632.1 146305167 5106311 126485..127327 1 NC_009439.1 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 127327 5106311 Pmen_0126 Pseudomonas mendocina ymp dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001185632.1 126485 D 399739 CDS YP_001185633.1 146305168 5106312 complement(127469..128371) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 128371 5106312 Pmen_0127 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185633.1 127469 R 399739 CDS YP_001185634.1 146305169 5106808 128663..130087 1 NC_009439.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 130087 aspA 5106808 aspA Pseudomonas mendocina ymp aspartate ammonia-lyase YP_001185634.1 128663 D 399739 CDS YP_001185635.1 146305170 5106809 130216..131469 1 NC_009439.1 PFAM: sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 131469 5106809 Pmen_0129 Pseudomonas mendocina ymp sodium:dicarboxylate symporter YP_001185635.1 130216 D 399739 CDS YP_001185636.1 146305171 5106810 complement(131600..133072) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 133072 5106810 Pmen_0130 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001185636.1 131600 R 399739 CDS YP_001185637.1 146305172 5106811 133170..133802 1 NC_009439.1 PFAM: Negative transcriptional regulator; FMN-binding negative transcriptional regulator 133802 5106811 Pmen_0131 Pseudomonas mendocina ymp FMN-binding negative transcriptional regulator YP_001185637.1 133170 D 399739 CDS YP_001185638.1 146305173 5106812 133822..134262 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 134262 5106812 Pmen_0132 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001185638.1 133822 D 399739 CDS YP_001185639.1 146305174 5106813 134262..134933 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 134933 5106813 Pmen_0133 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001185639.1 134262 D 399739 CDS YP_001185640.1 146305175 5106814 complement(134938..135756) 1 NC_009439.1 PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 135756 5106814 Pmen_0134 Pseudomonas mendocina ymp helix-turn-helix domain-containing protein YP_001185640.1 134938 R 399739 CDS YP_001185641.1 146305176 5106815 135917..137359 1 NC_009439.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid carrier protein 137359 5106815 Pmen_0135 Pseudomonas mendocina ymp amino acid carrier protein YP_001185641.1 135917 D 399739 CDS YP_001185642.1 146305177 5106816 137521..138510 1 NC_009439.1 PFAM: Asparaginase/glutaminase; asparaginase 138510 5106816 Pmen_0136 Pseudomonas mendocina ymp asparaginase YP_001185642.1 137521 D 399739 CDS YP_001185643.1 146305178 5106817 138539..138982 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 138982 5106817 Pmen_0137 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001185643.1 138539 D 399739 CDS YP_001185644.1 146305179 5106818 complement(138990..139385) 1 NC_009439.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 139385 5106818 Pmen_0138 Pseudomonas mendocina ymp endoribonuclease L-PSP YP_001185644.1 138990 R 399739 CDS YP_001185645.1 146305180 5106819 complement(139457..140365) 1 NC_009439.1 catalyzes the formation of glutamate from glutamine; glutaminase 140365 5106819 Pmen_0139 Pseudomonas mendocina ymp glutaminase YP_001185645.1 139457 R 399739 CDS YP_001185646.1 146305181 5106820 140508..141437 1 NC_009439.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 141437 5106820 Pmen_0140 Pseudomonas mendocina ymp auxin efflux carrier YP_001185646.1 140508 D 399739 CDS YP_001185647.1 146305182 5106821 complement(141427..142068) 1 NC_009439.1 hypothetical protein 142068 5106821 Pmen_0141 Pseudomonas mendocina ymp hypothetical protein YP_001185647.1 141427 R 399739 CDS YP_001185648.1 146305183 5106822 142477..143601 1 NC_009439.1 PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; cytochrome c oxidase subunit II 143601 5106822 Pmen_0142 Pseudomonas mendocina ymp cytochrome c oxidase subunit II YP_001185648.1 142477 D 399739 CDS YP_001185649.1 146305184 5106823 143606..145189 1 NC_009439.1 PFAM: cytochrome c oxidase, subunit I; cytochrome-c oxidase 145189 5106823 Pmen_0143 Pseudomonas mendocina ymp cytochrome-c oxidase YP_001185649.1 143606 D 399739 CDS YP_001185650.1 146305185 5106824 145200..145748 1 NC_009439.1 involved in the insertion of copper into subunit I of cytochrome C oxidase; cytochrome C oxidase assembly protein 145748 5106824 Pmen_0144 Pseudomonas mendocina ymp cytochrome C oxidase assembly protein YP_001185650.1 145200 D 399739 CDS YP_001185651.1 146305186 5106825 145760..146656 1 NC_009439.1 PFAM: cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III 146656 5106825 Pmen_0145 Pseudomonas mendocina ymp cytochrome c oxidase subunit III YP_001185651.1 145760 D 399739 CDS YP_001185652.1 146305187 5106826 complement(146665..146868) 1 NC_009439.1 hypothetical protein 146868 5106826 Pmen_0146 Pseudomonas mendocina ymp hypothetical protein YP_001185652.1 146665 R 399739 CDS YP_001185653.1 146305188 5106827 146940..147671 1 NC_009439.1 hypothetical protein 147671 5106827 Pmen_0147 Pseudomonas mendocina ymp hypothetical protein YP_001185653.1 146940 D 399739 CDS YP_001185654.1 146305189 5106828 147646..148227 1 NC_009439.1 hypothetical protein 148227 5106828 Pmen_0148 Pseudomonas mendocina ymp hypothetical protein YP_001185654.1 147646 D 399739 CDS YP_001185655.1 146305190 5106829 148264..149301 1 NC_009439.1 PFAM: cytochrome oxidase assembly; cytochrome oxidase assembly 149301 5106829 Pmen_0149 Pseudomonas mendocina ymp cytochrome oxidase assembly YP_001185655.1 148264 D 399739 CDS YP_001185656.1 146305191 5106830 149320..150219 1 NC_009439.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 150219 5106830 Pmen_0150 Pseudomonas mendocina ymp protoheme IX farnesyltransferase YP_001185656.1 149320 D 399739 CDS YP_001185657.1 146305192 5106831 150372..151004 1 NC_009439.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 151004 5106831 Pmen_0151 Pseudomonas mendocina ymp electron transport protein SCO1/SenC YP_001185657.1 150372 D 399739 CDS YP_001185658.1 146305193 5106832 complement(151066..152016) 1 NC_009439.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 152016 5106832 Pmen_0152 Pseudomonas mendocina ymp homoserine kinase YP_001185658.1 151066 R 399739 CDS YP_001185659.1 146305194 5106833 complement(152032..152316) 1 NC_009439.1 hypothetical protein 152316 5106833 Pmen_0153 Pseudomonas mendocina ymp hypothetical protein YP_001185659.1 152032 R 399739 CDS YP_001185660.1 146305195 5106834 152534..155329 1 NC_009439.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 155329 5106834 Pmen_0154 Pseudomonas mendocina ymp DNA polymerase I YP_001185660.1 152534 D 399739 CDS YP_001185661.1 146305196 5106835 complement(155776..156426) 1 NC_009439.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 156426 engB 5106835 engB Pseudomonas mendocina ymp ribosome biogenesis GTP-binding protein YsxC YP_001185661.1 155776 R 399739 CDS YP_001185662.1 146305197 5106836 156671..156961 1 NC_009439.1 cytochrome c5-like protein 156961 5106836 Pmen_0156 Pseudomonas mendocina ymp cytochrome c5-like protein YP_001185662.1 156671 D 399739 CDS YP_001185663.1 146305198 5106837 157010..157615 1 NC_009439.1 PFAM: cytochrome c, class I; cytochrome c, class I 157615 5106837 Pmen_0157 Pseudomonas mendocina ymp cytochrome c, class I YP_001185663.1 157010 D 399739 CDS YP_001185664.1 146305199 5106838 157755..158405 1 NC_009439.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 158405 5106838 Pmen_0158 Pseudomonas mendocina ymp DSBA oxidoreductase YP_001185664.1 157755 D 399739 CDS YP_001185665.1 146305200 5106839 158425..159297 1 NC_009439.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 159297 5106839 Pmen_0159 Pseudomonas mendocina ymp endonuclease/exonuclease/phosphatase YP_001185665.1 158425 D 399739 CDS YP_001185666.1 146305201 5106840 complement(159403..160971) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 160971 5106840 Pmen_0160 Pseudomonas mendocina ymp transposase IS66 YP_001185666.1 159403 R 399739 CDS YP_001185667.1 146305202 5106841 complement(160991..161350) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 161350 5106841 Pmen_0161 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001185667.1 160991 R 399739 CDS YP_001185668.1 146305203 5106842 161388..163232 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 163232 5106842 Pmen_0162 Pseudomonas mendocina ymp diguanylate cyclase YP_001185668.1 161388 D 399739 CDS YP_001185669.1 146305204 5106843 complement(163250..164761) 1 NC_009439.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; uracil-xanthine permease 164761 5106843 Pmen_0163 Pseudomonas mendocina ymp uracil-xanthine permease YP_001185669.1 163250 R 399739 CDS YP_001185670.1 146305205 5106844 164992..165582 1 NC_009439.1 PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 165582 5106844 Pmen_0164 Pseudomonas mendocina ymp multiple antibiotic resistance (MarC)-like protein YP_001185670.1 164992 D 399739 CDS YP_001185671.1 146305206 5106845 165579..166361 1 NC_009439.1 PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase 166361 5106845 Pmen_0165 Pseudomonas mendocina ymp N-acetylmuramoyl-L-alanine amidase YP_001185671.1 165579 D 399739 CDS YP_001185672.1 146305207 5106846 complement(166365..166769) 1 NC_009439.1 hypothetical protein 166769 5106846 Pmen_0166 Pseudomonas mendocina ymp hypothetical protein YP_001185672.1 166365 R 399739 CDS YP_001185673.1 146305208 5106847 complement(166883..167545) 1 NC_009439.1 hypothetical protein 167545 5106847 Pmen_0167 Pseudomonas mendocina ymp hypothetical protein YP_001185673.1 166883 R 399739 CDS YP_001185674.1 146305209 5106848 complement(167580..167987) 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 167987 5106848 Pmen_0168 Pseudomonas mendocina ymp response regulator receiver protein YP_001185674.1 167580 R 399739 CDS YP_001185675.1 146305210 5106849 168101..171607 1 NC_009439.1 PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; multi-sensor hybrid histidine kinase 171607 5106849 Pmen_0169 Pseudomonas mendocina ymp multi-sensor hybrid histidine kinase YP_001185675.1 168101 D 399739 CDS YP_001185676.1 146305211 5106850 171607..172416 1 NC_009439.1 PFAM: MCP methyltransferase, CheR-type; chemotaxis protein CheR 172416 5106850 Pmen_0170 Pseudomonas mendocina ymp chemotaxis protein CheR YP_001185676.1 171607 D 399739 CDS YP_001185677.1 146305212 5106851 172413..173024 1 NC_009439.1 PFAM: CheB methylesterase; CheB methylesterase 173024 5106851 Pmen_0171 Pseudomonas mendocina ymp CheB methylesterase YP_001185677.1 172413 D 399739 CDS YP_001185678.1 146305213 5106852 173018..174205 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; response regulator receiver sensor signal transduction histidine kinase 174205 5106852 Pmen_0172 Pseudomonas mendocina ymp response regulator receiver sensor signal transduction histidine kinase YP_001185678.1 173018 D 399739 CDS YP_001185679.1 146305214 5106853 174381..174668 1 NC_009439.1 hypothetical protein 174668 5106853 Pmen_0173 Pseudomonas mendocina ymp hypothetical protein YP_001185679.1 174381 D 399739 CDS YP_001185680.1 146305215 5106854 174687..174872 1 NC_009439.1 hypothetical protein 174872 5106854 Pmen_0174 Pseudomonas mendocina ymp hypothetical protein YP_001185680.1 174687 D 399739 CDS YP_001185681.1 146305216 5106855 complement(174898..176694) 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; alginate biosynthesis sensor protein KinB 176694 5106855 Pmen_0175 Pseudomonas mendocina ymp alginate biosynthesis sensor protein KinB YP_001185681.1 174898 R 399739 CDS YP_001185682.1 146305217 5106856 complement(176708..178060) 1 NC_009439.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; two-component response regulator AlgB 178060 5106856 Pmen_0176 Pseudomonas mendocina ymp two-component response regulator AlgB YP_001185682.1 176708 R 399739 CDS YP_001185683.1 146305218 5106857 178271..179101 1 NC_009439.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated 179101 5106857 Pmen_0177 Pseudomonas mendocina ymp transport-associated YP_001185683.1 178271 D 399739 CDS YP_001185684.1 146305219 5106858 179167..179601 1 NC_009439.1 hypothetical protein 179601 5106858 Pmen_0178 Pseudomonas mendocina ymp hypothetical protein YP_001185684.1 179167 D 399739 CDS YP_001185685.1 146305220 5106859 180505..181473 1 NC_009439.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein, family 1; phosphate binding protein 181473 5106859 Pmen_0179 Pseudomonas mendocina ymp phosphate binding protein YP_001185685.1 180505 D 399739 CDS YP_001185686.1 146305221 5106860 181639..183924 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 183924 5106860 Pmen_0180 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001185686.1 181639 D 399739 CDS YP_001185687.1 146305222 5106861 183940..185616 1 NC_009439.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 185616 5106861 Pmen_0181 Pseudomonas mendocina ymp phosphate ABC transporter permease YP_001185687.1 183940 D 399739 CDS YP_001185688.1 146305223 5106862 185683..186516 1 NC_009439.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 186516 5106862 Pmen_0182 Pseudomonas mendocina ymp phosphate transporter ATP-binding protein YP_001185688.1 185683 D 399739 CDS YP_001185689.1 146305224 5106863 186678..187406 1 NC_009439.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 187406 5106863 Pmen_0183 Pseudomonas mendocina ymp phosphate uptake regulator PhoU YP_001185689.1 186678 D 399739 CDS YP_001185690.1 146305225 5106864 187542..188450 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 188450 5106864 Pmen_0184 Pseudomonas mendocina ymp response regulator receiver protein YP_001185690.1 187542 D 399739 CDS YP_001185691.1 146305226 5106865 188598..189494 1 NC_009439.1 PFAM: peptidase M23B; peptidase M23B 189494 5106865 Pmen_0185 Pseudomonas mendocina ymp peptidase M23B YP_001185691.1 188598 D 399739 CDS YP_001185692.1 146305227 5106866 189850..191145 1 NC_009439.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated 2 domain-containing protein 191145 5106866 Pmen_0186 Pseudomonas mendocina ymp flagellar hook-associated 2 domain-containing protein YP_001185692.1 189850 D 399739 CDS YP_001185693.1 146305228 5106867 191145..191543 1 NC_009439.1 PFAM: flagellar protein FliS; flagellar protein FliS 191543 5106867 Pmen_0187 Pseudomonas mendocina ymp flagellar protein FliS YP_001185693.1 191145 D 399739 CDS YP_001185694.1 146305229 5106868 191527..191844 1 NC_009439.1 hypothetical protein 191844 5106868 Pmen_0188 Pseudomonas mendocina ymp hypothetical protein YP_001185694.1 191527 D 399739 CDS YP_001185695.1 146305230 5106869 191848..192906 1 NC_009439.1 PFAM: flagellar hook-length control protein; flagellar hook-length control protein 192906 5106869 Pmen_0189 Pseudomonas mendocina ymp flagellar hook-length control protein YP_001185695.1 191848 D 399739 CDS YP_001185696.1 146305231 5106870 192934..193410 1 NC_009439.1 hypothetical protein 193410 5106870 Pmen_0190 Pseudomonas mendocina ymp hypothetical protein YP_001185696.1 192934 D 399739 CDS YP_001185697.1 146305232 5106871 193427..194161 1 NC_009439.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; RNA polymerase sigma-28 subunit FliA/WhiG 194161 5106871 Pmen_0191 Pseudomonas mendocina ymp RNA polymerase sigma-28 subunit FliA/WhiG YP_001185697.1 193427 D 399739 CDS YP_001185698.1 146305233 5106872 194163..195035 1 NC_009439.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 195035 5106872 Pmen_0192 Pseudomonas mendocina ymp flagellar motor protein MotA YP_001185698.1 194163 D 399739 CDS YP_001185699.1 146305234 5106873 195032..195973 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 195973 5106873 Pmen_0193 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001185699.1 195032 D 399739 CDS YP_001185700.1 146305235 5106874 complement(196058..196528) 1 NC_009439.1 hypothetical protein 196528 5106874 Pmen_0194 Pseudomonas mendocina ymp hypothetical protein YP_001185700.1 196058 R 399739 CDS YP_001185701.1 146305236 5106875 complement(196525..197358) 1 NC_009439.1 PFAM: transcriptional regulator domain protein; transcriptional regulator CadC 197358 5106875 Pmen_0195 Pseudomonas mendocina ymp transcriptional regulator CadC YP_001185701.1 196525 R 399739 CDS YP_001185702.1 146305237 5106876 complement(197677..198576) 1 NC_009439.1 PFAM: flagellin domain protein; flagellin domain-containing protein 198576 5106876 Pmen_0196 Pseudomonas mendocina ymp flagellin domain-containing protein YP_001185702.1 197677 R 399739 CDS YP_001185703.1 146305238 5106877 complement(198855..199022) 1 NC_009439.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 199022 5106877 Pmen_0197 Pseudomonas mendocina ymp rubredoxin-type Fe(Cys)4 protein YP_001185703.1 198855 R 399739 CDS YP_001185704.1 146305239 5106878 complement(199140..200840) 1 NC_009439.1 PFAM: L-lactate permease; L-lactate permease 200840 5106878 Pmen_0198 Pseudomonas mendocina ymp L-lactate permease YP_001185704.1 199140 R 399739 CDS YP_001185705.1 146305240 5106879 complement(201068..203245) 1 NC_009439.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 203245 5106879 Pmen_0199 Pseudomonas mendocina ymp malate synthase G YP_001185705.1 201068 R 399739 CDS YP_001185706.1 146305241 5106880 complement(203399..203839) 1 NC_009439.1 PFAM: protein of unknown function DUF336; hypothetical protein 203839 5106880 Pmen_0200 Pseudomonas mendocina ymp hypothetical protein YP_001185706.1 203399 R 399739 CDS YP_001185707.1 146305242 5106168 complement(203876..205093) 1 NC_009439.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; glycolate oxidase iron-sulfur subunit 205093 glcF 5106168 glcF Pseudomonas mendocina ymp glycolate oxidase iron-sulfur subunit YP_001185707.1 203876 R 399739 CDS YP_001185708.1 146305243 5106169 complement(205097..206152) 1 NC_009439.1 PFAM: FAD linked oxidase domain protein; glycolate oxidase FAD binding subunit 206152 glcE 5106169 glcE Pseudomonas mendocina ymp glycolate oxidase FAD binding subunit YP_001185708.1 205097 R 399739 CDS YP_001185709.1 146305244 5106170 complement(206152..207651) 1 NC_009439.1 TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; glycolate oxidase subunit GlcD 207651 5106170 Pmen_0203 Pseudomonas mendocina ymp glycolate oxidase subunit GlcD YP_001185709.1 206152 R 399739 CDS YP_001185710.1 146305245 5106171 207891..208664 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; DNA-binding transcriptional regulator GlcC 208664 5106171 Pmen_0204 Pseudomonas mendocina ymp DNA-binding transcriptional regulator GlcC YP_001185710.1 207891 D 399739 CDS YP_001185711.1 146305246 5106172 complement(208742..209587) 1 NC_009439.1 PFAM: SAF domain; SAF domain-containing protein 209587 5106172 Pmen_0205 Pseudomonas mendocina ymp SAF domain-containing protein YP_001185711.1 208742 R 399739 CDS YP_001185712.1 146305247 5106173 209639..209992 1 NC_009439.1 TIGRFAM: flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 209992 5106173 Pmen_0206 Pseudomonas mendocina ymp flagellar basal-body rod protein FlgB YP_001185712.1 209639 D 399739 CDS YP_001185713.1 146305248 5106174 209995..210423 1 NC_009439.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar basal body rod protein FlgC 210423 flgC 5106174 flgC Pseudomonas mendocina ymp flagellar basal body rod protein FlgC YP_001185713.1 209995 D 399739 CDS YP_001185714.1 146305249 5106175 210423..211100 1 NC_009439.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Vibrio parahaemolyticus protein in this cluster is associated with lateral flagella production; flagellar basal body rod modification protein 211100 flgD 5106175 flgD Pseudomonas mendocina ymp flagellar basal body rod modification protein YP_001185714.1 210423 D 399739 CDS YP_001185715.1 146305250 5106176 211137..212324 1 NC_009439.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body FlaE domain-containing protein 212324 5106176 Pmen_0209 Pseudomonas mendocina ymp flagellar basal body FlaE domain-containing protein YP_001185715.1 211137 D 399739 CDS YP_001185716.1 146305251 5106177 212334..213065 1 NC_009439.1 TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgF 213065 5106177 Pmen_0210 Pseudomonas mendocina ymp flagellar basal-body rod protein FlgF YP_001185716.1 212334 D 399739 CDS YP_001185717.1 146305252 5106178 213261..214046 1 NC_009439.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal-body rod protein FlgG 214046 5106178 Pmen_0211 Pseudomonas mendocina ymp flagellar basal-body rod protein FlgG YP_001185717.1 213261 D 399739 CDS YP_001185718.1 146305253 5106179 214052..214714 1 NC_009439.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; the Yersinia have 2 copies of flgH; flagellar basal body L-ring protein 214714 flgH 5106179 flgH Pseudomonas mendocina ymp flagellar basal body L-ring protein YP_001185718.1 214052 D 399739 CDS YP_001185719.1 146305254 5106180 214724..215818 1 NC_009439.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 215818 flgI 5106180 flgI Pseudomonas mendocina ymp flagellar basal body P-ring protein YP_001185719.1 214724 D 399739 CDS YP_001185720.1 146305255 5106181 215822..216946 1 NC_009439.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 216946 5106181 Pmen_0214 Pseudomonas mendocina ymp lytic transglycosylase YP_001185720.1 215822 D 399739 CDS YP_001185721.1 146305256 5106182 216950..218317 1 NC_009439.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar hook-associated protein FlgK 218317 5106182 Pmen_0215 Pseudomonas mendocina ymp flagellar hook-associated protein FlgK YP_001185721.1 216950 D 399739 CDS YP_001185722.1 146305257 5106183 218341..219258 1 NC_009439.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; in Vibrio parahaemolyticus the protein in this cluster is associated with the lateral flagella; flagellar hook-associated protein FlgL 219258 flgL 5106183 flgL Pseudomonas mendocina ymp flagellar hook-associated protein FlgL YP_001185722.1 218341 D 399739 CDS YP_001185723.1 146305258 5106184 219271..220296 1 NC_009439.1 hypothetical protein 220296 5106184 Pmen_0217 Pseudomonas mendocina ymp hypothetical protein YP_001185723.1 219271 D 399739 CDS YP_001185724.1 146305259 5106185 complement(220390..221370) 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 221370 5106185 Pmen_0218 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001185724.1 220390 R 399739 CDS YP_001185725.1 146305260 5106186 complement(221603..222754) 1 NC_009439.1 hypothetical protein 222754 5106186 Pmen_0219 Pseudomonas mendocina ymp hypothetical protein YP_001185725.1 221603 R 399739 CDS YP_001185726.1 146305261 5106187 complement(222897..224366) 1 NC_009439.1 poly-gamma-glutamate biosynthesis protein 224366 5106187 Pmen_0220 Pseudomonas mendocina ymp poly-gamma-glutamate biosynthesis protein YP_001185726.1 222897 R 399739 CDS YP_001185727.1 146305262 5106188 complement(224384..225679) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 225679 5106188 Pmen_0221 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001185727.1 224384 R 399739 CDS YP_001185728.1 146305263 5106189 complement(225807..226730) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 226730 5106189 Pmen_0222 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185728.1 225807 R 399739 CDS YP_001185729.1 146305264 5106190 complement(226866..228227) 1 NC_009439.1 PFAM: protein of unknown function DUF1329; hypothetical protein 228227 5106190 Pmen_0223 Pseudomonas mendocina ymp hypothetical protein YP_001185729.1 226866 R 399739 CDS YP_001185730.1 146305265 5106191 complement(228248..230059) 1 NC_009439.1 PFAM: protein of unknown function DUF1302; hypothetical protein 230059 5106191 Pmen_0224 Pseudomonas mendocina ymp hypothetical protein YP_001185730.1 228248 R 399739 CDS YP_001185731.1 146305266 5106192 230370..231347 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 231347 5106192 Pmen_0225 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase YP_001185731.1 230370 D 399739 CDS YP_001185732.1 146305267 5106193 231453..232058 1 NC_009439.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 232058 5106193 Pmen_0226 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001185732.1 231453 D 399739 CDS YP_001185733.1 146305268 5106194 232306..233889 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 233889 5106194 Pmen_0227 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001185733.1 232306 D 399739 CDS YP_001185734.1 146305269 5106195 complement(233959..234732) 1 NC_009439.1 hypothetical protein 234732 5106195 Pmen_0228 Pseudomonas mendocina ymp hypothetical protein YP_001185734.1 233959 R 399739 CDS YP_001185735.1 146305270 5106196 234834..236258 1 NC_009439.1 PFAM: regulatory protein, LuxR; putative metal dependent phosphohydrolase 236258 5106196 Pmen_0229 Pseudomonas mendocina ymp putative metal dependent phosphohydrolase YP_001185735.1 234834 D 399739 CDS YP_001185736.1 146305271 5106197 236346..236660 1 NC_009439.1 hypothetical protein 236660 5106197 Pmen_0230 Pseudomonas mendocina ymp hypothetical protein YP_001185736.1 236346 D 399739 CDS YP_001185737.1 146305272 5106935 237746..239197 1 NC_009439.1 catalyzes the formation of succinate from succinate semialdehyde; NADP dependent; succinate-semialdehyde dehydrogenase I 239197 gabD 5106935 gabD Pseudomonas mendocina ymp succinate-semialdehyde dehydrogenase I YP_001185737.1 237746 D 399739 CDS YP_001185738.1 146305273 5106199 239295..240617 1 NC_009439.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 240617 5106199 Pmen_0232 Pseudomonas mendocina ymp 4-aminobutyrate aminotransferase YP_001185738.1 239295 D 399739 CDS YP_001185739.1 146305274 5106200 240881..242566 1 NC_009439.1 hypothetical protein 242566 5106200 Pmen_0233 Pseudomonas mendocina ymp hypothetical protein YP_001185739.1 240881 D 399739 CDS YP_001185740.1 146305275 5106201 242659..243186 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 243186 5106201 Pmen_0234 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001185740.1 242659 D 399739 CDS YP_001185741.1 146305276 5106202 243183..244319 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 244319 5106202 Pmen_0235 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001185741.1 243183 D 399739 CDS YP_001185742.1 146305277 5106203 complement(244394..244753) 1 NC_009439.1 PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 244753 5106203 Pmen_0236 Pseudomonas mendocina ymp hypothetical protein YP_001185742.1 244394 R 399739 CDS YP_001185743.1 146305278 5106204 245006..246499 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 246499 5106204 Pmen_0237 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001185743.1 245006 D 399739 CDS YP_001185744.1 146305279 5106205 246805..247953 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 247953 5106205 Pmen_0238 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001185744.1 246805 D 399739 CDS YP_001185745.1 146305280 5106206 248041..248994 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 248994 5106206 Pmen_0239 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001185745.1 248041 D 399739 CDS YP_001185746.1 146305281 5106207 complement(248995..250416) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 250416 5106207 Pmen_0240 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001185746.1 248995 R 399739 CDS YP_001185747.1 146305282 5106208 250578..250796 1 NC_009439.1 PFAM: protein of unknown function DUF1127; hypothetical protein 250796 5106208 Pmen_0241 Pseudomonas mendocina ymp hypothetical protein YP_001185747.1 250578 D 399739 CDS YP_001185748.1 146305283 5106209 complement(250803..252116) 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 252116 5106209 Pmen_0242 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001185748.1 250803 R 399739 CDS YP_001185749.1 146305284 5106210 252353..252706 1 NC_009439.1 PFAM: protein of unknown function UPF0153; hypothetical protein 252706 5106210 Pmen_0243 Pseudomonas mendocina ymp hypothetical protein YP_001185749.1 252353 D 399739 CDS YP_001185750.1 146305285 5106211 complement(252765..253253) 1 NC_009439.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 253253 5106211 Pmen_0244 Pseudomonas mendocina ymp AsnC family transcriptional regulator YP_001185750.1 252765 R 399739 CDS YP_001185751.1 146305286 5106212 253411..254709 1 NC_009439.1 catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit 254709 5106212 Pmen_0245 Pseudomonas mendocina ymp D-amino acid dehydrogenase small subunit YP_001185751.1 253411 D 399739 CDS YP_001185752.1 146305287 5106213 254747..255097 1 NC_009439.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 255097 5106213 Pmen_0246 Pseudomonas mendocina ymp endoribonuclease L-PSP YP_001185752.1 254747 D 399739 CDS YP_001185753.1 146305288 5106214 255241..256329 1 NC_009439.1 catabolic enzyme, converts L-alanine to D-alanine which is then oxidized to pyruvate by dadA; alanine racemase 256329 dadX 5106214 dadX Pseudomonas mendocina ymp alanine racemase YP_001185753.1 255241 D 399739 CDS YP_001185754.1 146305289 5106215 256433..256981 1 NC_009439.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 256981 5106215 Pmen_0248 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001185754.1 256433 D 399739 CDS YP_001185755.1 146305290 5106216 257104..257514 1 NC_009439.1 cytochrome c5-like protein 257514 5106216 Pmen_0249 Pseudomonas mendocina ymp cytochrome c5-like protein YP_001185755.1 257104 D 399739 CDS YP_001185756.1 146305291 5106217 257927..260062 1 NC_009439.1 Acetyl-CoA hydrolase-like protein 260062 5106217 Pmen_0250 Pseudomonas mendocina ymp Acetyl-CoA hydrolase-like protein YP_001185756.1 257927 D 399739 CDS YP_001185757.1 146305292 5106218 complement(260123..260695) 1 NC_009439.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine; xanthine phosphoribosyltransferase 260695 5106218 Pmen_0251 Pseudomonas mendocina ymp xanthine phosphoribosyltransferase YP_001185757.1 260123 R 399739 CDS YP_001185758.1 146305293 5106219 complement(260830..261312) 1 NC_009439.1 hypothetical protein 261312 5106219 Pmen_0252 Pseudomonas mendocina ymp hypothetical protein YP_001185758.1 260830 R 399739 CDS YP_001185759.1 146305294 5106220 complement(261491..263500) 1 NC_009439.1 TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; ATP-dependent DNA helicase Rep 263500 5106220 Pmen_0253 Pseudomonas mendocina ymp ATP-dependent DNA helicase Rep YP_001185759.1 261491 R 399739 CDS YP_001185760.1 146305295 5106221 263771..265444 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 265444 5106221 Pmen_0254 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001185760.1 263771 D 399739 CDS YP_001185761.1 146305296 5106222 complement(265479..266864) 1 NC_009439.1 functions as a Na(+)/drug antiporter; multidrug efflux protein NorA 266864 5106222 Pmen_0255 Pseudomonas mendocina ymp multidrug efflux protein NorA YP_001185761.1 265479 R 399739 CDS YP_001185762.1 146305297 5106223 266995..267921 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 267921 5106223 Pmen_0256 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185762.1 266995 D 399739 CDS YP_001185763.1 146305298 5106224 complement(268018..269511) 1 NC_009439.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 269511 5106224 Pmen_0257 Pseudomonas mendocina ymp Mg chelatase subunit ChlI YP_001185763.1 268018 R 399739 CDS YP_001185764.1 146305299 5106225 complement(269546..269893) 1 NC_009439.1 PFAM: protein of unknown function DUF526; hypothetical protein 269893 5106225 Pmen_0258 Pseudomonas mendocina ymp hypothetical protein YP_001185764.1 269546 R 399739 CDS YP_001185765.1 146305300 5106226 270217..270555 1 NC_009439.1 PFAM: nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 270555 5106226 Pmen_0259 Pseudomonas mendocina ymp nitrogen regulatory protein P-II YP_001185765.1 270217 D 399739 CDS YP_001185766.1 146305301 5106227 270885..272135 1 NC_009439.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter 272135 5106227 Pmen_0260 Pseudomonas mendocina ymp ammonium transporter YP_001185766.1 270885 D 399739 CDS YP_001185767.1 146305302 5106228 272234..272659 1 NC_009439.1 PFAM: protein of unknown function UPF0047; hypothetical protein 272659 5106228 Pmen_0261 Pseudomonas mendocina ymp hypothetical protein YP_001185767.1 272234 D 399739 CDS YP_001185768.1 146305303 5106229 272737..273060 1 NC_009439.1 hypothetical protein 273060 5106229 Pmen_0262 Pseudomonas mendocina ymp hypothetical protein YP_001185768.1 272737 D 399739 CDS YP_001185769.1 146305304 5106230 complement(273185..273886) 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 273886 5106230 Pmen_0263 Pseudomonas mendocina ymp HAD family hydrolase YP_001185769.1 273185 R 399739 CDS YP_001185770.1 146305305 5106231 complement(273883..274830) 1 NC_009439.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 274830 xerC 5106231 xerC Pseudomonas mendocina ymp site-specific tyrosine recombinase XerC YP_001185770.1 273883 R 399739 CDS YP_001185771.1 146305306 5106232 complement(274845..275543) 1 NC_009439.1 PFAM: protein of unknown function DUF484; hypothetical protein 275543 5106232 Pmen_0265 Pseudomonas mendocina ymp hypothetical protein YP_001185771.1 274845 R 399739 CDS YP_001185772.1 146305307 5106233 complement(275540..276370) 1 NC_009439.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 276370 dapF 5106233 dapF Pseudomonas mendocina ymp diaminopimelate epimerase YP_001185772.1 275540 R 399739 CDS YP_001185773.1 146305308 5106234 complement(276381..277628) 1 NC_009439.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 277628 5106234 Pmen_0267 Pseudomonas mendocina ymp diaminopimelate decarboxylase YP_001185773.1 276381 R 399739 CDS YP_001185774.1 146305309 5106235 277945..278982 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 278982 5106235 Pmen_0268 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001185774.1 277945 D 399739 CDS YP_001185775.1 146305310 5106236 279052..279384 1 NC_009439.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 279384 cyaY 5106236 cyaY Pseudomonas mendocina ymp frataxin-like protein YP_001185775.1 279052 D 399739 CDS YP_001185776.1 146305311 5110240 279374..279571 1 NC_009439.1 PFAM: protein of unknown function DUF1289; hypothetical protein 279571 5110240 Pmen_0270 Pseudomonas mendocina ymp hypothetical protein YP_001185776.1 279374 D 399739 CDS YP_001185777.1 146305312 5110241 279689..280096 1 NC_009439.1 Regulates the synthesis of nucleoside triphosphates for nucleic acid synthesis, CTP for lipid synthesis, and GTP for protein elongation; nucleoside diphosphate kinase regulator 280096 5110241 Pmen_0271 Pseudomonas mendocina ymp nucleoside diphosphate kinase regulator YP_001185777.1 279689 D 399739 CDS YP_001185778.1 146305313 5110242 280155..280955 1 NC_009439.1 PFAM: lipase, class 3; lipase, class 3 280955 5110242 Pmen_0272 Pseudomonas mendocina ymp lipase, class 3 YP_001185778.1 280155 D 399739 CDS YP_001185779.1 146305314 5110243 complement(280970..283828) 1 NC_009439.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 283828 cyaA 5110243 cyaA Pseudomonas mendocina ymp adenylate cyclase YP_001185779.1 280970 R 399739 CDS YP_001185780.1 146305315 5110244 complement(283949..284203) 1 NC_009439.1 hypothetical protein 284203 5110244 Pmen_0274 Pseudomonas mendocina ymp hypothetical protein YP_001185780.1 283949 R 399739 CDS YP_001185781.1 146305316 5110245 complement(284278..284607) 1 NC_009439.1 hypothetical protein 284607 5110245 Pmen_0275 Pseudomonas mendocina ymp hypothetical protein YP_001185781.1 284278 R 399739 CDS YP_001185782.1 146305317 5110246 complement(284588..285046) 1 NC_009439.1 hypothetical protein 285046 5110246 Pmen_0276 Pseudomonas mendocina ymp hypothetical protein YP_001185782.1 284588 R 399739 CDS YP_001185783.1 146305318 5110247 complement(285099..286493) 1 NC_009439.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 286493 5110247 Pmen_0277 Pseudomonas mendocina ymp argininosuccinate lyase YP_001185783.1 285099 R 399739 CDS YP_001185784.1 146305319 5110248 286726..287808 1 NC_009439.1 PFAM: histidine kinase internal region; sensory transduction protein kinase AlgZ 287808 5110248 Pmen_0278 Pseudomonas mendocina ymp sensory transduction protein kinase AlgZ YP_001185784.1 286726 D 399739 CDS YP_001185785.1 146305320 5110249 287805..288551 1 NC_009439.1 PFAM: response regulator receiver; LytTr DNA-binding region; two-component response regulator AlgR 288551 5110249 Pmen_0279 Pseudomonas mendocina ymp two-component response regulator AlgR YP_001185785.1 287805 D 399739 CDS YP_001185786.1 146305321 5110250 288636..289574 1 NC_009439.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 289574 hemC 5110250 hemC Pseudomonas mendocina ymp porphobilinogen deaminase YP_001185786.1 288636 D 399739 CDS YP_001185787.1 146305322 5110251 289571..290344 1 NC_009439.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 290344 5110251 Pmen_0281 Pseudomonas mendocina ymp uroporphyrinogen-III synthase YP_001185787.1 289571 D 399739 CDS YP_001185788.1 146305323 5110252 290357..291487 1 NC_009439.1 PFAM: protein of unknown function DUF513, hemX; hypothetical protein 291487 5110252 Pmen_0282 Pseudomonas mendocina ymp hypothetical protein YP_001185788.1 290357 D 399739 CDS YP_001185789.1 146305324 5110253 291484..292731 1 NC_009439.1 PFAM: HemY domain protein; HemY domain-containing protein 292731 5110253 Pmen_0283 Pseudomonas mendocina ymp HemY domain-containing protein YP_001185789.1 291484 D 399739 CDS YP_001185790.1 146305325 5110254 292884..293375 1 NC_009439.1 PFAM: Disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 293375 5110254 Pmen_0284 Pseudomonas mendocina ymp disulfide bond formation protein DsbB YP_001185790.1 292884 D 399739 CDS YP_001185791.1 146305326 5110255 293685..294158 1 NC_009439.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 294158 5110255 Pmen_0285 Pseudomonas mendocina ymp anti-RNA polymerase sigma 70 factor YP_001185791.1 293685 D 399739 CDS YP_001185792.1 146305327 5110256 complement(294216..294863) 1 NC_009439.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 294863 5110256 Pmen_0286 Pseudomonas mendocina ymp FKBP-type peptidylprolyl isomerase YP_001185792.1 294216 R 399739 CDS YP_001185793.1 146305328 5110257 295000..295953 1 NC_009439.1 putative CheA signal transduction histidine kinase 295953 5110257 Pmen_0287 Pseudomonas mendocina ymp putative CheA signal transduction histidine kinase YP_001185793.1 295000 D 399739 CDS YP_001185794.1 146305329 5110258 complement(295950..296393) 1 NC_009439.1 hypothetical protein 296393 5110258 Pmen_0288 Pseudomonas mendocina ymp hypothetical protein YP_001185794.1 295950 R 399739 CDS YP_001185795.1 146305330 5110259 296432..298342 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 298342 5110259 Pmen_0289 Pseudomonas mendocina ymp ABC transporter-like protein YP_001185795.1 296432 D 399739 CDS YP_001185796.1 146305331 5110260 298342..298881 1 NC_009439.1 hypothetical protein 298881 5110260 Pmen_0290 Pseudomonas mendocina ymp hypothetical protein YP_001185796.1 298342 D 399739 CDS YP_001185797.1 146305332 5110261 298916..299590 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 299590 5110261 Pmen_0291 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001185797.1 298916 D 399739 CDS YP_001185798.1 146305333 5110262 299719..301608 1 NC_009439.1 PFAM: cytochrome c, class I; iron permease FTR1; iron permease FTR1 301608 5110262 Pmen_0292 Pseudomonas mendocina ymp iron permease FTR1 YP_001185798.1 299719 D 399739 CDS YP_001185799.1 146305334 5110263 301731..302066 1 NC_009439.1 hypothetical protein 302066 5110263 Pmen_0293 Pseudomonas mendocina ymp hypothetical protein YP_001185799.1 301731 D 399739 CDS YP_001185800.1 146305335 5110264 302128..302577 1 NC_009439.1 PFAM: protein of unknown function DUF188; hypothetical protein 302577 5110264 Pmen_0294 Pseudomonas mendocina ymp hypothetical protein YP_001185800.1 302128 D 399739 CDS YP_001185801.1 146305336 5110265 complement(302689..303156) 1 NC_009439.1 PFAM: thioesterase superfamily protein; hypothetical protein 303156 5110265 Pmen_0295 Pseudomonas mendocina ymp hypothetical protein YP_001185801.1 302689 R 399739 CDS YP_001185802.1 146305337 5110266 complement(303387..304046) 1 NC_009439.1 PFAM: ThiJ/PfpI domain protein; isoprenoid biosynthesis protein 304046 5110266 Pmen_0296 Pseudomonas mendocina ymp isoprenoid biosynthesis protein YP_001185802.1 303387 R 399739 CDS YP_001185803.1 146305338 5110267 304209..305501 1 NC_009439.1 sterol desaturase-like protein 305501 5110267 Pmen_0297 Pseudomonas mendocina ymp sterol desaturase-like protein YP_001185803.1 304209 D 399739 CDS YP_001185804.1 146305339 5110268 complement(305469..306023) 1 NC_009439.1 hypothetical protein 306023 5110268 Pmen_0298 Pseudomonas mendocina ymp hypothetical protein YP_001185804.1 305469 R 399739 CDS YP_001185805.1 146305340 5110269 306217..307230 1 NC_009439.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 307230 5110269 Pmen_0299 Pseudomonas mendocina ymp delta-aminolevulinic acid dehydratase YP_001185805.1 306217 D 399739 CDS YP_001185806.1 146305341 5110270 307250..309433 1 NC_009439.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 309433 5110270 Pmen_0300 Pseudomonas mendocina ymp polyphosphate kinase YP_001185806.1 307250 D 399739 CDS YP_001185807.1 146305342 5110271 complement(309603..311105) 1 NC_009439.1 PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 311105 5110271 Pmen_0301 Pseudomonas mendocina ymp Ppx/GppA phosphatase YP_001185807.1 309603 R 399739 CDS YP_001185808.1 146305343 5110272 complement(311192..311713) 1 NC_009439.1 PFAM: Ureidoglycolate hydrolase; ureidoglycolate hydrolase 311713 5110272 Pmen_0302 Pseudomonas mendocina ymp ureidoglycolate hydrolase YP_001185808.1 311192 R 399739 CDS YP_001185809.1 146305344 5110273 complement(311710..312441) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 312441 5110273 Pmen_0303 Pseudomonas mendocina ymp ABC transporter-like protein YP_001185809.1 311710 R 399739 CDS YP_001185810.1 146305345 5110274 complement(312428..313075) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 313075 5110274 Pmen_0304 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001185810.1 312428 R 399739 CDS YP_001185811.1 146305346 5110275 complement(313075..313740) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 313740 5110275 Pmen_0305 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001185811.1 313075 R 399739 CDS YP_001185812.1 146305347 5110276 complement(313760..314545) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 314545 5110276 Pmen_0306 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185812.1 313760 R 399739 CDS YP_001185813.1 146305348 5110277 314833..315537 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; GntR family transcriptional regulator 315537 5110277 Pmen_0307 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001185813.1 314833 D 399739 CDS YP_001185814.1 146305349 5110278 315647..315973 1 NC_009439.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 315973 5110278 Pmen_0308 Pseudomonas mendocina ymp thioredoxin YP_001185814.1 315647 D 399739 CDS YP_001185815.1 146305350 5110279 316206..317465 1 NC_009439.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 317465 rho 5110279 rho Pseudomonas mendocina ymp transcription termination factor Rho YP_001185815.1 316206 D 399739 CDS YP_001185816.1 146305351 5110280 317715..319181 1 NC_009439.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 319181 5110280 Pmen_0310 Pseudomonas mendocina ymp 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001185816.1 317715 D 399739 CDS YP_001185817.1 146305352 5110281 319181..320149 1 NC_009439.1 catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose; CDP-6-deoxy-delta-3,4-glucoseen reductase 320149 5110281 Pmen_0311 Pseudomonas mendocina ymp CDP-6-deoxy-delta-3,4-glucoseen reductase YP_001185817.1 319181 D 399739 CDS YP_001185818.1 146305353 5110282 320439..320597 1 NC_009439.1 hypothetical protein 320597 5110282 Pmen_0312 Pseudomonas mendocina ymp hypothetical protein YP_001185818.1 320439 D 399739 CDS YP_001185819.1 146305354 5110283 complement(320784..321764) 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 321764 5110283 Pmen_0313 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001185819.1 320784 R 399739 CDS YP_001185820.1 146305355 5110284 321914..322318 1 NC_009439.1 PFAM: flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL-like protein 322318 5110284 Pmen_0314 Pseudomonas mendocina ymp flagellar basal body-associated protein FliL-like protein YP_001185820.1 321914 D 399739 CDS YP_001185821.1 146305356 5110285 complement(322382..323506) 1 NC_009439.1 PFAM: ABC-2 type transporter; ABC transporter 323506 5110285 Pmen_0315 Pseudomonas mendocina ymp ABC transporter YP_001185821.1 322382 R 399739 CDS YP_001185822.1 146305357 5110286 complement(323506..326211) 1 NC_009439.1 PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; ABC transporter-like protein 326211 5110286 Pmen_0316 Pseudomonas mendocina ymp ABC transporter-like protein YP_001185822.1 323506 R 399739 CDS YP_001185823.1 146305358 5110287 complement(326208..327272) 1 NC_009439.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 327272 5110287 Pmen_0317 Pseudomonas mendocina ymp secretion protein HlyD family protein YP_001185823.1 326208 R 399739 CDS YP_001185824.1 146305359 5110288 complement(327366..329204) 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 329204 5110288 Pmen_0318 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase YP_001185824.1 327366 R 399739 CDS YP_001185825.1 146305360 5110289 complement(329256..329705) 1 NC_009439.1 PFAM: protein of unknown function DUF55; hypothetical protein 329705 5110289 Pmen_0319 Pseudomonas mendocina ymp hypothetical protein YP_001185825.1 329256 R 399739 CDS YP_001185826.1 146305361 5110290 329899..330030 1 NC_009439.1 hypothetical protein 330030 5110290 Pmen_0320 Pseudomonas mendocina ymp hypothetical protein YP_001185826.1 329899 D 399739 CDS YP_001185827.1 146305362 5110291 complement(330083..330679) 1 NC_009439.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 330679 5110291 Pmen_0321 Pseudomonas mendocina ymp 5-formyltetrahydrofolate cyclo-ligase YP_001185827.1 330083 R 399739 CDS YP_001185828.1 146305363 5110292 complement(330980..331285) 1 NC_009439.1 PFAM: protein of unknown function DUF710; cell division protein ZapA 331285 5110292 Pmen_0322 Pseudomonas mendocina ymp cell division protein ZapA YP_001185828.1 330980 R 399739 CDS YP_001185829.1 146305364 5110293 complement(331282..331491) 1 NC_009439.1 hypothetical protein 331491 5110293 Pmen_0323 Pseudomonas mendocina ymp hypothetical protein YP_001185829.1 331282 R 399739 CDS YP_001185830.1 146305365 5110294 331682..332236 1 NC_009439.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 332236 5110294 Pmen_0324 Pseudomonas mendocina ymp hypothetical protein YP_001185830.1 331682 D 399739 CDS YP_001185831.1 146305366 5110295 332255..333589 1 NC_009439.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; peptidase M24 333589 5110295 Pmen_0325 Pseudomonas mendocina ymp peptidase M24 YP_001185831.1 332255 D 399739 CDS YP_001185832.1 146305367 5110296 333594..334778 1 NC_009439.1 Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone; 2-octaprenyl-6-methoxyphenyl hydroxylase 334778 5110296 Pmen_0326 Pseudomonas mendocina ymp 2-octaprenyl-6-methoxyphenyl hydroxylase YP_001185832.1 333594 D 399739 CDS YP_001185833.1 146305368 5110297 334881..336104 1 NC_009439.1 catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 336104 5110297 Pmen_0327 Pseudomonas mendocina ymp 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_001185833.1 334881 D 399739 CDS YP_001185834.1 146305369 5110298 336144..336440 1 NC_009439.1 hypothetical protein 336440 5110298 Pmen_0328 Pseudomonas mendocina ymp hypothetical protein YP_001185834.1 336144 D 399739 CDS YP_001185835.1 146305370 5106936 337706..339322 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 339322 5106936 Pmen_0330 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001185835.1 337706 D 399739 CDS YP_001185836.1 146305371 5110300 339634..340731 1 NC_009439.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 340731 gcvT 5110300 gcvT Pseudomonas mendocina ymp glycine cleavage system aminomethyltransferase T YP_001185836.1 339634 D 399739 CDS YP_001185837.1 146305372 5110301 340826..341215 1 NC_009439.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 341215 5110301 Pmen_0332 Pseudomonas mendocina ymp glycine cleavage system protein H YP_001185837.1 340826 D 399739 CDS YP_001185838.1 146305373 5110302 341362..341676 1 NC_009439.1 PFAM: regulatory protein, ArsR; ArsR family transcriptional regulator 341676 5110302 Pmen_0333 Pseudomonas mendocina ymp ArsR family transcriptional regulator YP_001185838.1 341362 D 399739 CDS YP_001185839.1 146305374 5110303 341673..342107 1 NC_009439.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 342107 5110303 Pmen_0334 Pseudomonas mendocina ymp hypothetical protein YP_001185839.1 341673 D 399739 CDS YP_001185840.1 146305375 5110304 342110..342529 1 NC_009439.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 342529 5110304 Pmen_0335 Pseudomonas mendocina ymp hypothetical protein YP_001185840.1 342110 D 399739 CDS YP_001185841.1 146305376 5110305 342544..342732 1 NC_009439.1 hypothetical protein 342732 5110305 Pmen_0336 Pseudomonas mendocina ymp hypothetical protein YP_001185841.1 342544 D 399739 CDS YP_001185842.1 146305377 5110306 complement(342811..343917) 1 NC_009439.1 catalyzes the formation of carbamoylputrescine from agmatine in the arginine decarboxylase pathway of putrescine biosynthesis; agmatine deiminase 343917 5110306 Pmen_0337 Pseudomonas mendocina ymp agmatine deiminase YP_001185842.1 342811 R 399739 CDS YP_001185843.1 146305378 5110307 complement(343987..344871) 1 NC_009439.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 344871 5110307 Pmen_0338 Pseudomonas mendocina ymp nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001185843.1 343987 R 399739 CDS YP_001185844.1 146305379 5110308 complement(345135..345776) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 345776 5110308 Pmen_0339 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001185844.1 345135 R 399739 CDS YP_001185845.1 146305380 5110309 complement(345848..346906) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 346906 5110309 Pmen_0340 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185845.1 345848 R 399739 CDS YP_001185846.1 146305381 5110310 complement(347083..348462) 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; L-glutamine synthetase 348462 5110310 Pmen_0341 Pseudomonas mendocina ymp L-glutamine synthetase YP_001185846.1 347083 R 399739 CDS YP_001185847.1 146305382 5110311 349220..350578 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; L-glutamine synthetase 350578 5110311 Pmen_0342 Pseudomonas mendocina ymp L-glutamine synthetase YP_001185847.1 349220 D 399739 CDS YP_001185848.1 146305383 5110312 350662..352035 1 NC_009439.1 PFAM: aminotransferase class-III; putative aminotransferase 352035 5110312 Pmen_0343 Pseudomonas mendocina ymp putative aminotransferase YP_001185848.1 350662 D 399739 CDS YP_001185849.1 146305384 5110313 352167..353264 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 353264 5110313 Pmen_0344 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185849.1 352167 D 399739 CDS YP_001185850.1 146305385 5110314 353332..354426 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 354426 5110314 Pmen_0345 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185850.1 353332 D 399739 CDS YP_001185851.1 146305386 5110315 354494..355585 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 355585 5110315 Pmen_0346 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185851.1 354494 D 399739 CDS YP_001185852.1 146305387 5110316 355639..356793 1 NC_009439.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 356793 5110316 Pmen_0347 Pseudomonas mendocina ymp spermidine/putrescine ABC transporter ATPase YP_001185852.1 355639 D 399739 CDS YP_001185853.1 146305388 5110317 356790..357698 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 357698 5110317 Pmen_0348 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001185853.1 356790 D 399739 CDS YP_001185854.1 146305389 5110318 357695..358582 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; ornithine carbamoyltransferase 358582 5110318 Pmen_0349 Pseudomonas mendocina ymp ornithine carbamoyltransferase YP_001185854.1 357695 D 399739 CDS YP_001185855.1 146305390 5108272 complement(358663..360027) 1 NC_009439.1 PFAM: adenylate cyclase; adenylate cyclase 360027 5108272 Pmen_0350 Pseudomonas mendocina ymp adenylate cyclase YP_001185855.1 358663 R 399739 CDS YP_001185856.1 146305391 5108273 360139..360816 1 NC_009439.1 PFAM: protein of unknown function DUF47; hypothetical protein 360816 5108273 Pmen_0351 Pseudomonas mendocina ymp hypothetical protein YP_001185856.1 360139 D 399739 CDS YP_001185857.1 146305392 5108274 360855..362126 1 NC_009439.1 PFAM: phosphate transporter; phosphate transporter 362126 5108274 Pmen_0352 Pseudomonas mendocina ymp phosphate transporter YP_001185857.1 360855 D 399739 CDS YP_001185858.1 146305393 5108275 362194..363360 1 NC_009439.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase 363360 5108275 Pmen_0353 Pseudomonas mendocina ymp acetylornithine deacetylase YP_001185858.1 362194 D 399739 CDS YP_001185859.1 146305394 5108276 363424..364722 1 NC_009439.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 364722 5108276 Pmen_0354 Pseudomonas mendocina ymp N-acetylglutamate synthase YP_001185859.1 363424 D 399739 CDS YP_001185860.1 146305395 5108277 complement(364870..365097) 1 NC_009439.1 hypothetical protein 365097 5108277 Pmen_0355 Pseudomonas mendocina ymp hypothetical protein YP_001185860.1 364870 R 399739 CDS YP_001185861.1 146305396 5108278 complement(365265..366845) 1 NC_009439.1 involved in the first step of glutathione biosynthesis; glutamate--cysteine ligase 366845 5108278 Pmen_0356 Pseudomonas mendocina ymp glutamate--cysteine ligase YP_001185861.1 365265 R 399739 CDS YP_001185862.1 146305397 5108279 complement(366949..367335) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 367335 5108279 Pmen_0357 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001185862.1 366949 R 399739 CDS YP_001185863.1 146305398 5108280 complement(367332..369656) 1 NC_009439.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; RNA-binding S1 domain-containing protein 369656 5108280 Pmen_0358 Pseudomonas mendocina ymp RNA-binding S1 domain-containing protein YP_001185863.1 367332 R 399739 CDS YP_001185864.1 146305399 5108281 369863..370600 1 NC_009439.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 370600 ompR 5108281 ompR Pseudomonas mendocina ymp osmolarity response regulator YP_001185864.1 369863 D 399739 CDS YP_001185865.1 146305400 5108282 370677..371993 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; osmolarity sensor protein envZ 371993 5108282 Pmen_0360 Pseudomonas mendocina ymp osmolarity sensor protein envZ YP_001185865.1 370677 D 399739 CDS YP_001185866.1 146305401 5108283 372096..375860 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 375860 5108283 Pmen_0361 Pseudomonas mendocina ymp PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001185866.1 372096 D 399739 CDS YP_001185867.1 146305402 5108284 complement(375867..376763) 1 NC_009439.1 PFAM: peptidase U61, LD-carboxypeptidase A; peptidase U61, LD-carboxypeptidase A 376763 5108284 Pmen_0362 Pseudomonas mendocina ymp peptidase U61, LD-carboxypeptidase A YP_001185867.1 375867 R 399739 CDS YP_001185868.1 146305403 5108285 complement(376760..377665) 1 NC_009439.1 TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; 30S ribosomal protein S6 modification protein RimK 377665 5108285 Pmen_0363 Pseudomonas mendocina ymp 30S ribosomal protein S6 modification protein RimK YP_001185868.1 376760 R 399739 CDS YP_001185869.1 146305404 5108286 complement(377662..378132) 1 NC_009439.1 PFAM: protein of unknown function DUF785; hypothetical protein 378132 5108286 Pmen_0364 Pseudomonas mendocina ymp hypothetical protein YP_001185869.1 377662 R 399739 CDS YP_001185870.1 146305405 5108287 378165..378677 1 NC_009439.1 PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 378677 5108287 Pmen_0365 Pseudomonas mendocina ymp RNA-binding S4 domain-containing protein YP_001185870.1 378165 D 399739 CDS YP_001185871.1 146305406 5108288 complement(378756..379550) 1 NC_009439.1 PFAM: phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 379550 5108288 Pmen_0366 Pseudomonas mendocina ymp PA-phosphatase-like phosphoesterase YP_001185871.1 378756 R 399739 CDS YP_001185872.1 146305407 5108289 379760..380647 1 NC_009439.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 380647 hslO 5108289 hslO Pseudomonas mendocina ymp Hsp33-like chaperonin YP_001185872.1 379760 D 399739 CDS YP_001185873.1 146305408 5108290 380805..382346 1 NC_009439.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 382346 5108290 Pmen_0368 Pseudomonas mendocina ymp phosphoenolpyruvate carboxykinase YP_001185873.1 380805 D 399739 CDS YP_001185874.1 146305409 5108291 382505..384433 1 NC_009439.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 384433 5108291 Pmen_0369 Pseudomonas mendocina ymp ATP-dependent DNA helicase RecQ YP_001185874.1 382505 D 399739 CDS YP_001185875.1 146305410 5108292 complement(384493..385092) 1 NC_009439.1 PFAM: protein of unknown function DUF330; hypothetical protein 385092 5108292 Pmen_0370 Pseudomonas mendocina ymp hypothetical protein YP_001185875.1 384493 R 399739 CDS YP_001185876.1 146305411 5108293 complement(385089..386006) 1 NC_009439.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 386006 5108293 Pmen_0371 Pseudomonas mendocina ymp hypothetical protein YP_001185876.1 385089 R 399739 CDS YP_001185877.1 146305412 5108294 complement(386007..386792) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 386792 5108294 Pmen_0372 Pseudomonas mendocina ymp ABC transporter-like protein YP_001185877.1 386007 R 399739 CDS YP_001185878.1 146305413 5108295 complement(386789..387928) 1 NC_009439.1 PFAM: protein of unknown function DUF140; hypothetical protein 387928 5108295 Pmen_0373 Pseudomonas mendocina ymp hypothetical protein YP_001185878.1 386789 R 399739 CDS YP_001185879.1 146305414 5108296 388088..389575 1 NC_009439.1 flavoprotein involved in K+ transport-like protein 389575 5108296 Pmen_0374 Pseudomonas mendocina ymp flavoprotein involved in K+ transport-like protein YP_001185879.1 388088 D 399739 CDS YP_001185880.1 146305415 5108297 389675..389887 1 NC_009439.1 hypothetical protein 389887 5108297 Pmen_0375 Pseudomonas mendocina ymp hypothetical protein YP_001185880.1 389675 D 399739 CDS YP_001185881.1 146305416 5108298 390127..391047 1 NC_009439.1 PFAM: aldo/keto reductase; aldo/keto reductase 391047 5108298 Pmen_0376 Pseudomonas mendocina ymp aldo/keto reductase YP_001185881.1 390127 D 399739 CDS YP_001185882.1 146305417 5108299 391049..392341 1 NC_009439.1 ATP/ADP translocase-like protein 392341 5108299 Pmen_0377 Pseudomonas mendocina ymp ATP/ADP translocase-like protein YP_001185882.1 391049 D 399739 CDS YP_001185883.1 146305418 5108300 complement(392365..393261) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 393261 5108300 Pmen_0378 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185883.1 392365 R 399739 CDS YP_001185884.1 146305419 5108301 393360..394601 1 NC_009439.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase 394601 5108301 Pmen_0379 Pseudomonas mendocina ymp 3-hydroxyacyl-CoA dehydrogenase YP_001185884.1 393360 D 399739 CDS YP_001185885.1 146305420 5108302 394598..396388 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 396388 5108302 Pmen_0380 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001185885.1 394598 D 399739 CDS YP_001185886.1 146305421 5108303 396527..397690 1 NC_009439.1 PFAM: iron-containing alcohol dehydrogenase; alcohol dehydrogenase 397690 5108303 Pmen_0381 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001185886.1 396527 D 399739 CDS YP_001185887.1 146305422 5108304 397788..398219 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 398219 5108304 Pmen_0382 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001185887.1 397788 D 399739 CDS YP_001185888.1 146305423 5108305 398283..399347 1 NC_009439.1 hypothetical protein 399347 5108305 Pmen_0383 Pseudomonas mendocina ymp hypothetical protein YP_001185888.1 398283 D 399739 CDS YP_001185889.1 146305424 5108306 399344..400114 1 NC_009439.1 hypothetical protein 400114 5108306 Pmen_0384 Pseudomonas mendocina ymp hypothetical protein YP_001185889.1 399344 D 399739 CDS YP_001185890.1 146305425 5108307 complement(400108..400560) 1 NC_009439.1 PFAM: 17 kDa surface antigen; 17 kDa surface antigen 400560 5108307 Pmen_0385 Pseudomonas mendocina ymp 17 kDa surface antigen YP_001185890.1 400108 R 399739 CDS YP_001185891.1 146305426 5108308 complement(400692..401780) 1 NC_009439.1 PFAM: regulatory protein, LysR; molybdate metabolism transcriptional regulator 401780 5108308 Pmen_0386 Pseudomonas mendocina ymp molybdate metabolism transcriptional regulator YP_001185891.1 400692 R 399739 CDS YP_001185892.1 146305427 5108309 401979..402473 1 NC_009439.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH dehydrogenase (ubiquinone), 24 kDa subunit 402473 5108309 Pmen_0387 Pseudomonas mendocina ymp NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001185892.1 401979 D 399739 CDS YP_001185893.1 146305428 5108310 402470..404041 1 NC_009439.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH dehydrogenase (quinone) 404041 5108310 Pmen_0388 Pseudomonas mendocina ymp NADH dehydrogenase (quinone) YP_001185893.1 402470 D 399739 CDS YP_001185894.1 146305429 5108311 404057..406891 1 NC_009439.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha 406891 5108311 Pmen_0389 Pseudomonas mendocina ymp formate dehydrogenase subunit alpha YP_001185894.1 404057 D 399739 CDS YP_001185895.1 146305430 5108312 407040..407288 1 NC_009439.1 formate dehydrogenase subunit delta 407288 5108312 Pmen_0390 Pseudomonas mendocina ymp formate dehydrogenase subunit delta YP_001185895.1 407040 D 399739 CDS YP_001185896.1 146305431 5108313 407489..408313 1 NC_009439.1 TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD 408313 5108313 Pmen_0391 Pseudomonas mendocina ymp formate dehydrogenase family accessory protein FdhD YP_001185896.1 407489 D 399739 CDS YP_001185897.1 146305432 5108314 complement(408370..409032) 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 409032 5108314 Pmen_0392 Pseudomonas mendocina ymp HAD family hydrolase YP_001185897.1 408370 R 399739 CDS YP_001185898.1 146305433 5108315 409142..409708 1 NC_009439.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 409708 nudE 5108315 nudE Pseudomonas mendocina ymp ADP-ribose diphosphatase NudE YP_001185898.1 409142 D 399739 CDS YP_001185899.1 146305434 5108316 409705..410523 1 NC_009439.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; 3'(2'),5'-bisphosphate nucleotidase 410523 5108316 Pmen_0394 Pseudomonas mendocina ymp 3'(2'),5'-bisphosphate nucleotidase YP_001185899.1 409705 D 399739 CDS YP_001185900.1 146305435 5108317 complement(410576..412483) 1 NC_009439.1 PFAM: beta-ketoacyl synthase; beta-ketoacyl synthase 412483 5108317 Pmen_0395 Pseudomonas mendocina ymp beta-ketoacyl synthase YP_001185900.1 410576 R 399739 CDS YP_001185901.1 146305436 5108318 complement(412740..414011) 1 NC_009439.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 414011 pyrC 5108318 pyrC Pseudomonas mendocina ymp dihydroorotase YP_001185901.1 412740 R 399739 CDS YP_001185902.1 146305437 5108319 complement(414011..415018) 1 NC_009439.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 415018 pyrB 5108319 pyrB Pseudomonas mendocina ymp aspartate carbamoyltransferase catalytic subunit YP_001185902.1 414011 R 399739 CDS YP_001185903.1 146305438 5108320 complement(415030..415533) 1 NC_009439.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 415533 5108320 Pmen_0398 Pseudomonas mendocina ymp bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_001185903.1 415030 R 399739 CDS YP_001185904.1 146305439 5108321 complement(415680..416114) 1 NC_009439.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 416114 5108321 Pmen_0399 Pseudomonas mendocina ymp Holliday junction resolvase-like protein YP_001185904.1 415680 R 399739 CDS YP_001185905.1 146305440 5108322 complement(416114..416719) 1 NC_009439.1 PFAM: protein of unknown function DUF179; hypothetical protein 416719 5108322 Pmen_0400 Pseudomonas mendocina ymp hypothetical protein YP_001185905.1 416114 R 399739 CDS YP_001185906.1 146305441 5108323 complement(416778..417674) 1 NC_009439.1 TIGRFAM: TonB family protein; TonB family protein 417674 5108323 Pmen_0401 Pseudomonas mendocina ymp TonB family protein YP_001185906.1 416778 R 399739 CDS YP_001185907.1 146305442 5108324 complement(417763..418719) 1 NC_009439.1 catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 418719 5108324 Pmen_0402 Pseudomonas mendocina ymp glutathione synthetase YP_001185907.1 417763 R 399739 CDS YP_001185908.1 146305443 5108325 418961..419368 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 419368 5108325 Pmen_0403 Pseudomonas mendocina ymp response regulator receiver protein YP_001185908.1 418961 D 399739 CDS YP_001185909.1 146305444 5108326 419415..419780 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 419780 5108326 Pmen_0404 Pseudomonas mendocina ymp response regulator receiver protein YP_001185909.1 419415 D 399739 CDS YP_001185910.1 146305445 5108327 419826..420359 1 NC_009439.1 PFAM: CheW domain protein; putative CheW protein 420359 5108327 Pmen_0405 Pseudomonas mendocina ymp putative CheW protein YP_001185910.1 419826 D 399739 CDS YP_001185911.1 146305446 5108328 420444..422480 1 NC_009439.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 422480 5108328 Pmen_0406 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001185911.1 420444 D 399739 CDS YP_001185912.1 146305447 5108329 422541..423401 1 NC_009439.1 PFAM: MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase 423401 5108329 Pmen_0407 Pseudomonas mendocina ymp protein-glutamate O-methyltransferase YP_001185912.1 422541 D 399739 CDS YP_001185913.1 146305448 5108330 423412..430683 1 NC_009439.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; CheA signal transduction histidine kinase 430683 5108330 Pmen_0408 Pseudomonas mendocina ymp CheA signal transduction histidine kinase YP_001185913.1 423412 D 399739 CDS YP_001185914.1 146305449 5108331 430680..431699 1 NC_009439.1 PFAM: CheB methylesterase; CheB methylesterase 431699 5108331 Pmen_0409 Pseudomonas mendocina ymp CheB methylesterase YP_001185914.1 430680 D 399739 CDS YP_001185915.1 146305450 5108332 431710..432180 1 NC_009439.1 PFAM: CheW domain protein; putative CheW protein 432180 5108332 Pmen_0410 Pseudomonas mendocina ymp putative CheW protein YP_001185915.1 431710 D 399739 CDS YP_001185916.1 146305451 5108333 complement(432261..433742) 1 NC_009439.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; amino acid carrier protein 433742 5108333 Pmen_0411 Pseudomonas mendocina ymp amino acid carrier protein YP_001185916.1 432261 R 399739 CDS YP_001185917.1 146305452 5108334 complement(433950..434675) 1 NC_009439.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 434675 5108334 Pmen_0412 Pseudomonas mendocina ymp 16S ribosomal RNA methyltransferase RsmE YP_001185917.1 433950 R 399739 CDS YP_001185918.1 146305453 5108335 complement(434805..436208) 1 NC_009439.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 436208 5108335 Pmen_0413 Pseudomonas mendocina ymp adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_001185918.1 434805 R 399739 CDS YP_001185919.1 146305454 5108336 complement(436372..437868) 1 NC_009439.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 437868 5108336 Pmen_0414 Pseudomonas mendocina ymp methylmalonate-semialdehyde dehydrogenase YP_001185919.1 436372 R 399739 CDS YP_001185920.1 146305455 5108337 complement(437939..439096) 1 NC_009439.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 439096 5108337 Pmen_0415 Pseudomonas mendocina ymp iron-containing alcohol dehydrogenase YP_001185920.1 437939 R 399739 CDS YP_001185921.1 146305456 5108338 complement(439138..440532) 1 NC_009439.1 PFAM: Gluconate transporter; Citrate transporter; citrate transporter 440532 5108338 Pmen_0416 Pseudomonas mendocina ymp citrate transporter YP_001185921.1 439138 R 399739 CDS YP_001185922.1 146305457 5108339 440708..441466 1 NC_009439.1 PFAM: regulatory protein, IclR; IclR family transcriptional regulator 441466 5108339 Pmen_0417 Pseudomonas mendocina ymp IclR family transcriptional regulator YP_001185922.1 440708 D 399739 CDS YP_001185923.1 146305458 5108340 441564..442154 1 NC_009439.1 PFAM: cytochrome B561; cytochrome B561 442154 5108340 Pmen_0418 Pseudomonas mendocina ymp cytochrome B561 YP_001185923.1 441564 D 399739 CDS YP_001185924.1 146305459 5108341 442213..442788 1 NC_009439.1 PFAM: YceI family protein; hypothetical protein 442788 5108341 Pmen_0419 Pseudomonas mendocina ymp hypothetical protein YP_001185924.1 442213 D 399739 CDS YP_001185925.1 146305460 5108342 complement(442890..444776) 1 NC_009439.1 PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 444776 5108342 Pmen_0420 Pseudomonas mendocina ymp DEAD/DEAH box helicase YP_001185925.1 442890 R 399739 CDS YP_001185926.1 146305461 5108343 complement(444964..445722) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 445722 5108343 Pmen_0421 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185926.1 444964 R 399739 CDS YP_001185927.1 146305462 5108344 complement(445775..447148) 1 NC_009439.1 PFAM: conserved hypothetical protein 730; hypothetical protein 447148 5108344 Pmen_0422 Pseudomonas mendocina ymp hypothetical protein YP_001185927.1 445775 R 399739 CDS YP_001185928.1 146305463 5108345 complement(447247..448011) 1 NC_009439.1 hypothetical protein 448011 5108345 Pmen_0423 Pseudomonas mendocina ymp hypothetical protein YP_001185928.1 447247 R 399739 CDS YP_001185929.1 146305464 5108346 complement(447981..448847) 1 NC_009439.1 hypothetical protein 448847 5108346 Pmen_0424 Pseudomonas mendocina ymp hypothetical protein YP_001185929.1 447981 R 399739 CDS YP_001185930.1 146305465 5108347 449065..450111 1 NC_009439.1 TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 450111 5108347 Pmen_0425 Pseudomonas mendocina ymp recA protein YP_001185930.1 449065 D 399739 CDS YP_001185931.1 146305466 5108348 450481..451080 1 NC_009439.1 transposase 451080 5108348 Pmen_0426 Pseudomonas mendocina ymp transposase YP_001185931.1 450481 D 399739 CDS YP_001185932.1 146305467 5108349 451432..452733 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 452733 5108349 Pmen_0427 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001185932.1 451432 D 399739 CDS YP_001185933.1 146305468 5106937 453606..456260 1 NC_009439.1 PFAM: regulatory protein, LuxR; regulatory protein LuxR 456260 5106937 Pmen_0429 Pseudomonas mendocina ymp regulatory protein LuxR YP_001185933.1 453606 D 399739 CDS YP_001185934.1 146305469 5108351 456310..457467 1 NC_009439.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 457467 5108351 Pmen_0430 Pseudomonas mendocina ymp FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001185934.1 456310 D 399739 CDS YP_001185935.1 146305470 5108352 complement(457751..459313) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 459313 5108352 Pmen_0431 Pseudomonas mendocina ymp transposase IS66 YP_001185935.1 457751 R 399739 CDS YP_001185936.1 146305471 5108353 complement(459333..459692) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 459692 5108353 Pmen_0432 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001185936.1 459333 R 399739 CDS YP_001185937.1 146305472 5108354 459892..460230 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 460230 5108354 Pmen_0433 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001185937.1 459892 D 399739 CDS YP_001185938.1 146305473 5108355 complement(460424..461986) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 461986 5108355 Pmen_0434 Pseudomonas mendocina ymp transposase IS66 YP_001185938.1 460424 R 399739 CDS YP_001185939.1 146305474 5108356 complement(462006..462365) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 462365 5108356 Pmen_0435 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001185939.1 462006 R 399739 CDS YP_001185940.1 146305475 5108357 complement(462619..463311) 1 NC_009439.1 PFAM: OmpW family protein; OmpW family protein 463311 5108357 Pmen_0436 Pseudomonas mendocina ymp OmpW family protein YP_001185940.1 462619 R 399739 CDS YP_001185941.1 146305476 5108358 complement(463413..465056) 1 NC_009439.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 465056 5108358 Pmen_0437 Pseudomonas mendocina ymp AMP-dependent synthetase and ligase YP_001185941.1 463413 R 399739 CDS YP_001185942.1 146305477 5106938 complement(465679..466980) 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 466980 5106938 Pmen_0439 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001185942.1 465679 R 399739 CDS YP_001185943.1 146305478 5108360 complement(468254..469705) 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 469705 5108360 Pmen_0440 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001185943.1 468254 R 399739 CDS YP_001185944.1 146305479 5108361 complement(469752..470285) 1 NC_009439.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 470285 5108361 Pmen_0441 Pseudomonas mendocina ymp rubredoxin-type Fe(Cys)4 protein YP_001185944.1 469752 R 399739 CDS YP_001185945.1 146305480 5108362 complement(470321..470719) 1 NC_009439.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 470719 5108362 Pmen_0442 Pseudomonas mendocina ymp rubredoxin-type Fe(Cys)4 protein YP_001185945.1 470321 R 399739 CDS YP_001185946.1 146305481 5108363 complement(470936..472141) 1 NC_009439.1 PFAM: fatty acid desaturase; alkane 1-monooxygenase 472141 5108363 Pmen_0443 Pseudomonas mendocina ymp alkane 1-monooxygenase YP_001185946.1 470936 R 399739 CDS YP_001185947.1 146305482 5106939 complement(472350..473366) 1 NC_009439.1 hypothetical protein 473366 5106939 Pmen_0445 Pseudomonas mendocina ymp hypothetical protein YP_001185947.1 472350 R 399739 CDS YP_001185948.1 146305483 5108365 complement(473359..475107) 1 NC_009439.1 hypothetical protein 475107 5108365 Pmen_0446 Pseudomonas mendocina ymp hypothetical protein YP_001185948.1 473359 R 399739 CDS YP_001185949.1 146305484 5108366 complement(475224..476462) 1 NC_009439.1 hypothetical protein 476462 5108366 Pmen_0447 Pseudomonas mendocina ymp hypothetical protein YP_001185949.1 475224 R 399739 CDS YP_001185950.1 146305485 5108367 complement(476509..477354) 1 NC_009439.1 TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 477354 5108367 Pmen_0448 Pseudomonas mendocina ymp 5,10-methylenetetrahydrofolate reductase YP_001185950.1 476509 R 399739 CDS YP_001185951.1 146305486 5108368 complement(477445..478854) 1 NC_009439.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 478854 5108368 Pmen_0449 Pseudomonas mendocina ymp S-adenosyl-L-homocysteine hydrolase YP_001185951.1 477445 R 399739 CDS YP_001185952.1 146305487 5108369 479186..479572 1 NC_009439.1 hypothetical protein 479572 5108369 Pmen_0450 Pseudomonas mendocina ymp hypothetical protein YP_001185952.1 479186 D 399739 CDS YP_001185953.1 146305488 5108370 479729..480175 1 NC_009439.1 cytochrome c556-like protein 480175 5108370 Pmen_0451 Pseudomonas mendocina ymp cytochrome c556-like protein YP_001185953.1 479729 D 399739 CDS YP_001185954.1 146305489 5108371 complement(480169..480570) 1 NC_009439.1 PFAM: protein of unknown function DUF1090; hypothetical protein 480570 5108371 Pmen_0452 Pseudomonas mendocina ymp hypothetical protein YP_001185954.1 480169 R 399739 CDS YP_001185955.1 146305490 5108372 complement(480654..482342) 1 NC_009439.1 this ligase is similar to LigA but it lacks the C-terminal BRCT domain; catalyzes strand joining of nicked DNA in the presence of a divalent cation and NAD+; NAD-dependent DNA ligase LigB 482342 ligB 5108372 ligB Pseudomonas mendocina ymp NAD-dependent DNA ligase LigB YP_001185955.1 480654 R 399739 CDS YP_001185956.1 146305491 5108373 complement(482483..483673) 1 NC_009439.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 483673 5108373 Pmen_0454 Pseudomonas mendocina ymp S-adenosylmethionine synthetase YP_001185956.1 482483 R 399739 CDS YP_001185957.1 146305492 5108374 complement(483670..484674) 1 NC_009439.1 PFAM: regulatory protein, ArsR; Methyltransferase type 11; Methyltransferase type 12; ArsR family transcriptional regulator 484674 5108374 Pmen_0455 Pseudomonas mendocina ymp ArsR family transcriptional regulator YP_001185957.1 483670 R 399739 CDS YP_001185958.1 146305493 5108375 complement(484747..485631) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 485631 5108375 Pmen_0456 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001185958.1 484747 R 399739 CDS YP_001185959.1 146305494 5108376 485741..486895 1 NC_009439.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 486895 5108376 Pmen_0457 Pseudomonas mendocina ymp C4-dicarboxylate transporter/malic acid transport protein YP_001185959.1 485741 D 399739 CDS YP_001185960.1 146305495 5108377 487008..489008 1 NC_009439.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 489008 5108377 Pmen_0458 Pseudomonas mendocina ymp transketolase YP_001185960.1 487008 D 399739 CDS YP_001185961.1 146305496 5108378 489134..490201 1 NC_009439.1 TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase 490201 5108378 Pmen_0459 Pseudomonas mendocina ymp D-erythrose-4-phosphate dehydrogenase YP_001185961.1 489134 D 399739 CDS YP_001185962.1 146305497 5108379 490206..491366 1 NC_009439.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 491366 pgk 5108379 pgk Pseudomonas mendocina ymp phosphoglycerate kinase YP_001185962.1 490206 D 399739 CDS YP_001185963.1 146305498 5108380 491720..492046 1 NC_009439.1 hypothetical protein 492046 5108380 Pmen_0461 Pseudomonas mendocina ymp hypothetical protein YP_001185963.1 491720 D 399739 CDS YP_001185964.1 146305499 5108381 492144..493208 1 NC_009439.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 493208 5108381 Pmen_0462 Pseudomonas mendocina ymp fructose-1,6-bisphosphate aldolase YP_001185964.1 492144 D 399739 CDS YP_001185965.1 146305500 5108382 complement(493287..493970) 1 NC_009439.1 hypothetical protein 493970 5108382 Pmen_0463 Pseudomonas mendocina ymp hypothetical protein YP_001185965.1 493287 R 399739 CDS YP_001185966.1 146305501 5108383 494365..494841 1 NC_009439.1 hypothetical protein 494841 5108383 Pmen_0464 Pseudomonas mendocina ymp hypothetical protein YP_001185966.1 494365 D 399739 CDS YP_001185967.1 146305502 5108384 494855..495955 1 NC_009439.1 PFAM: glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 495955 5108384 Pmen_0465 Pseudomonas mendocina ymp glucose sorbosone dehydrogenase YP_001185967.1 494855 D 399739 CDS YP_001185968.1 146305503 5108385 496011..496502 1 NC_009439.1 PFAM: protein of unknown function DUF45; hypothetical protein 496502 5108385 Pmen_0466 Pseudomonas mendocina ymp hypothetical protein YP_001185968.1 496011 D 399739 CDS YP_001185969.1 146305504 5108386 complement(496604..496837) 1 NC_009439.1 hypothetical protein 496837 5108386 Pmen_0467 Pseudomonas mendocina ymp hypothetical protein YP_001185969.1 496604 R 399739 CDS YP_001185970.1 146305505 5108387 complement(496900..497382) 1 NC_009439.1 GreA/GreB family elongation factor 497382 5108387 Pmen_0468 Pseudomonas mendocina ymp GreA/GreB family elongation factor YP_001185970.1 496900 R 399739 CDS YP_001185971.1 146305506 5108388 complement(497444..499249) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; diguanylate cyclase 499249 5108388 Pmen_0469 Pseudomonas mendocina ymp diguanylate cyclase YP_001185971.1 497444 R 399739 CDS YP_001185972.1 146305507 5108389 complement(499316..501484) 1 NC_009439.1 TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; YccS/YhfK family integral membrane protein 501484 5108389 Pmen_0470 Pseudomonas mendocina ymp YccS/YhfK family integral membrane protein YP_001185972.1 499316 R 399739 CDS YP_001185973.1 146305508 5108390 501656..503101 1 NC_009439.1 PFAM: protein of unknown function DUF107; nodulation efficiency protein NfeD 503101 5108390 Pmen_0471 Pseudomonas mendocina ymp nodulation efficiency protein NfeD YP_001185973.1 501656 D 399739 CDS YP_001185974.1 146305509 5108391 503101..503850 1 NC_009439.1 PFAM: band 7 protein; hypothetical protein 503850 5108391 Pmen_0472 Pseudomonas mendocina ymp hypothetical protein YP_001185974.1 503101 D 399739 CDS YP_001185975.1 146305510 5108392 503958..505079 1 NC_009439.1 TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; L-alanine dehydrogenase 505079 5108392 Pmen_0473 Pseudomonas mendocina ymp L-alanine dehydrogenase YP_001185975.1 503958 D 399739 CDS YP_001185976.1 146305511 5108393 505225..505968 1 NC_009439.1 PFAM: intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase 505968 5108393 Pmen_0474 Pseudomonas mendocina ymp intradiol ring-cleavage dioxygenase YP_001185976.1 505225 D 399739 CDS YP_001185977.1 146305512 5108394 complement(505976..507874) 1 NC_009439.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; citrate transporter 507874 5108394 Pmen_0475 Pseudomonas mendocina ymp citrate transporter YP_001185977.1 505976 R 399739 CDS YP_001185978.1 146305513 5108395 complement(508050..509234) 1 NC_009439.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein 509234 5108395 Pmen_0476 Pseudomonas mendocina ymp hypothetical protein YP_001185978.1 508050 R 399739 CDS YP_001185979.1 146305514 5108396 509436..510176 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 510176 5108396 Pmen_0477 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001185979.1 509436 D 399739 CDS YP_001185980.1 146305515 5108397 complement(510143..511411) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 511411 5108397 Pmen_0478 Pseudomonas mendocina ymp response regulator receiver modulated diguanylate cyclase YP_001185980.1 510143 R 399739 CDS YP_001185981.1 146305516 5108398 complement(511452..512828) 1 NC_009439.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 512828 5108398 Pmen_0479 Pseudomonas mendocina ymp ATP-dependent RNA helicase DbpA YP_001185981.1 511452 R 399739 CDS YP_001185982.1 146305517 5108399 complement(512878..514344) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 514344 5108399 Pmen_0480 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001185982.1 512878 R 399739 CDS YP_001185983.1 146305518 5108400 complement(514463..516160) 1 NC_009439.1 catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase 516160 5108400 Pmen_0481 Pseudomonas mendocina ymp choline dehydrogenase YP_001185983.1 514463 R 399739 CDS YP_001185984.1 146305519 5108401 complement(516240..517712) 1 NC_009439.1 catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 517712 5108401 Pmen_0482 Pseudomonas mendocina ymp betaine aldehyde dehydrogenase YP_001185984.1 516240 R 399739 CDS YP_001185985.1 146305520 5108402 complement(518024..518614) 1 NC_009439.1 HTH-type; bet1; Repressor involved in choline regulation of the bet genes; transcriptional regulator BetI 518614 5108402 Pmen_0483 Pseudomonas mendocina ymp transcriptional regulator BetI YP_001185985.1 518024 R 399739 CDS YP_001185986.1 146305521 5108403 complement(518799..519650) 1 NC_009439.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 519650 5108403 Pmen_0484 Pseudomonas mendocina ymp glycine betaine ABC transporter substrate-binding protein YP_001185986.1 518799 R 399739 CDS YP_001185987.1 146305522 5108404 complement(519847..520791) 1 NC_009439.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 520791 5108404 Pmen_0485 Pseudomonas mendocina ymp glycine betaine ABC transporter substrate-binding protein YP_001185987.1 519847 R 399739 CDS YP_001185988.1 146305523 5108405 complement(520819..521703) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 521703 5108405 Pmen_0486 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001185988.1 520819 R 399739 CDS YP_001185989.1 146305524 5108406 complement(521696..522901) 1 NC_009439.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 522901 5108406 Pmen_0487 Pseudomonas mendocina ymp glycine betaine/L-proline ABC transporter ATPase YP_001185989.1 521696 R 399739 CDS YP_001185990.1 146305525 5108407 complement(523866..524810) 1 NC_009439.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 524810 5108407 Pmen_0488 Pseudomonas mendocina ymp glycine betaine ABC transporter substrate-binding protein YP_001185990.1 523866 R 399739 CDS YP_001185991.1 146305526 5108408 524902..525183 1 NC_009439.1 hypothetical protein 525183 5108408 Pmen_0489 Pseudomonas mendocina ymp hypothetical protein YP_001185991.1 524902 D 399739 CDS YP_001185992.1 146305527 5108409 525496..526590 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; transcriptional regulator 526590 5108409 Pmen_0490 Pseudomonas mendocina ymp transcriptional regulator YP_001185992.1 525496 D 399739 CDS YP_001185993.1 146305528 5108410 complement(526776..527027) 1 NC_009439.1 hypothetical protein 527027 5108410 Pmen_0491 Pseudomonas mendocina ymp hypothetical protein YP_001185993.1 526776 R 399739 CDS YP_001185994.1 146305529 5108411 complement(527053..527826) 1 NC_009439.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 527826 5108411 Pmen_0492 Pseudomonas mendocina ymp electron transfer flavoprotein subunit beta YP_001185994.1 527053 R 399739 CDS YP_001185995.1 146305530 5108412 complement(527889..529121) 1 NC_009439.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 529121 5108412 Pmen_0493 Pseudomonas mendocina ymp electron transfer flavoprotein subunit alpha YP_001185995.1 527889 R 399739 CDS YP_001185996.1 146305531 5108413 complement(529159..531120) 1 NC_009439.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 531120 5108413 Pmen_0494 Pseudomonas mendocina ymp hypothetical protein YP_001185996.1 529159 R 399739 CDS YP_001185997.1 146305532 5108414 complement(531273..533333) 1 NC_009439.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase 533333 5108414 Pmen_0495 Pseudomonas mendocina ymp NADH:flavin oxidoreductase YP_001185997.1 531273 R 399739 CDS YP_001185998.1 146305533 5108415 complement(533432..533962) 1 NC_009439.1 hypothetical protein 533962 5108415 Pmen_0496 Pseudomonas mendocina ymp hypothetical protein YP_001185998.1 533432 R 399739 CDS YP_001185999.1 146305534 5108416 complement(534093..535070) 1 NC_009439.1 PFAM: peptidase M19, renal dipeptidase; membrane dipeptidase 535070 5108416 Pmen_0497 Pseudomonas mendocina ymp membrane dipeptidase YP_001185999.1 534093 R 399739 CDS YP_001186000.1 146305535 5108417 complement(535258..536208) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; transcriptional regulator 536208 5108417 Pmen_0498 Pseudomonas mendocina ymp transcriptional regulator YP_001186000.1 535258 R 399739 CDS YP_001186001.1 146305536 5108418 536433..537371 1 NC_009439.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 537371 5108418 Pmen_0499 Pseudomonas mendocina ymp glycine betaine ABC transporter substrate-binding protein YP_001186001.1 536433 D 399739 CDS YP_001186002.1 146305537 5108419 537473..538357 1 NC_009439.1 PFAM: protein of unknown function DUF849; hypothetical protein 538357 5108419 Pmen_0500 Pseudomonas mendocina ymp hypothetical protein YP_001186002.1 537473 D 399739 CDS YP_001186003.1 146305538 5108420 538491..539456 1 NC_009439.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 539456 5108420 Pmen_0501 Pseudomonas mendocina ymp 3-hydroxybutyryl-CoA dehydrogenase YP_001186003.1 538491 D 399739 CDS YP_001186004.1 146305539 5108421 539565..540041 1 NC_009439.1 thioesterase-like protein 540041 5108421 Pmen_0502 Pseudomonas mendocina ymp thioesterase-like protein YP_001186004.1 539565 D 399739 CDS YP_001186005.1 146305540 5108422 540131..541318 1 NC_009439.1 TIGRFAM: gamma-butyrobetaine hydroxylase; PFAM: Taurine catabolism dioxygenase TauD/TfdA; gamma-butyrobetaine hydroxylase 541318 5108422 Pmen_0503 Pseudomonas mendocina ymp gamma-butyrobetaine hydroxylase YP_001186005.1 540131 D 399739 CDS YP_001186006.1 146305541 5108423 complement(541364..541759) 1 NC_009439.1 PFAM: protein of unknown function UPF0153; hypothetical protein 541759 5108423 Pmen_0504 Pseudomonas mendocina ymp hypothetical protein YP_001186006.1 541364 R 399739 CDS YP_001186007.1 146305542 5108424 541984..545607 1 NC_009439.1 hypothetical protein 545607 5108424 Pmen_0505 Pseudomonas mendocina ymp hypothetical protein YP_001186007.1 541984 D 399739 CDS YP_001186008.1 146305543 5108425 545604..546956 1 NC_009439.1 hypothetical protein 546956 5108425 Pmen_0506 Pseudomonas mendocina ymp hypothetical protein YP_001186008.1 545604 D 399739 CDS YP_001186009.1 146305544 5108426 547154..548827 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS/PAC sensor-containing diguanylate cyclase 548827 5108426 Pmen_0507 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase YP_001186009.1 547154 D 399739 CDS YP_001186010.1 146305545 5108427 548890..549897 1 NC_009439.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 549897 5108427 Pmen_0508 Pseudomonas mendocina ymp fructose-1,6-bisphosphatase YP_001186010.1 548890 D 399739 CDS YP_001186011.1 146305546 5108428 549901..550500 1 NC_009439.1 PFAM: protein of unknown function DUF924; hypothetical protein 550500 5108428 Pmen_0509 Pseudomonas mendocina ymp hypothetical protein YP_001186011.1 549901 D 399739 CDS YP_001186012.1 146305547 5108134 550573..550824 1 NC_009439.1 hypothetical protein 550824 5108134 Pmen_0510 Pseudomonas mendocina ymp hypothetical protein YP_001186012.1 550573 D 399739 CDS YP_001186013.1 146305548 5108135 550837..551379 1 NC_009439.1 PFAM: Lipocalin family protein; lipocalin family protein 551379 5108135 Pmen_0511 Pseudomonas mendocina ymp lipocalin family protein YP_001186013.1 550837 D 399739 CDS YP_001186014.1 146305549 5108136 complement(551505..551942) 1 NC_009439.1 hypothetical protein 551942 5108136 Pmen_0512 Pseudomonas mendocina ymp hypothetical protein YP_001186014.1 551505 R 399739 CDS YP_001186015.1 146305550 5108137 552021..552992 1 NC_009439.1 TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 552992 5108137 Pmen_0513 Pseudomonas mendocina ymp proline iminopeptidase YP_001186015.1 552021 D 399739 CDS YP_001186016.1 146305551 5108138 552989..553426 1 NC_009439.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 553426 5108138 Pmen_0514 Pseudomonas mendocina ymp D-tyrosyl-tRNA(Tyr) deacylase YP_001186016.1 552989 D 399739 CDS YP_001186017.1 146305552 5108139 complement(553508..554218) 1 NC_009439.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 554218 5108139 Pmen_0515 Pseudomonas mendocina ymp 16S ribosomal RNA methyltransferase RsmE YP_001186017.1 553508 R 399739 CDS YP_001186018.1 146305553 5108140 complement(554215..555009) 1 NC_009439.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 555009 5108140 Pmen_0516 Pseudomonas mendocina ymp Sec-independent protein translocase subunit TatC YP_001186018.1 554215 R 399739 CDS YP_001186019.1 146305554 5108141 complement(555006..555347) 1 NC_009439.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein subunit TatB 555347 5108141 Pmen_0517 Pseudomonas mendocina ymp twin-arginine translocation protein subunit TatB YP_001186019.1 555006 R 399739 CDS YP_001186020.1 146305555 5108142 complement(555351..555584) 1 NC_009439.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin arginine-targeting protein translocase 555584 5108142 Pmen_0518 Pseudomonas mendocina ymp twin arginine-targeting protein translocase YP_001186020.1 555351 R 399739 CDS YP_001186021.1 146305556 5108143 complement(555607..555942) 1 NC_009439.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 555942 hisE 5108143 hisE Pseudomonas mendocina ymp phosphoribosyl-ATP pyrophosphatase YP_001186021.1 555607 R 399739 CDS YP_001186022.1 146305557 5108144 complement(555935..556333) 1 NC_009439.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 556333 hisI 5108144 hisI Pseudomonas mendocina ymp phosphoribosyl-AMP cyclohydrolase YP_001186022.1 555935 R 399739 CDS YP_001186023.1 146305558 5108145 complement(556404..557987) 1 NC_009439.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; 2-octaprenylphenol hydroxylase 557987 5108145 Pmen_0521 Pseudomonas mendocina ymp 2-octaprenylphenol hydroxylase YP_001186023.1 556404 R 399739 CDS YP_001186024.1 146305559 5108146 complement(557984..558601) 1 NC_009439.1 PFAM: protein of unknown function DUF1243; hypothetical protein 558601 5108146 Pmen_0522 Pseudomonas mendocina ymp hypothetical protein YP_001186024.1 557984 R 399739 CDS YP_001186025.1 146305560 5108147 complement(558601..559371) 1 NC_009439.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 559371 ubiE 5108147 ubiE Pseudomonas mendocina ymp ubiquinone/menaquinone biosynthesis methyltransferase YP_001186025.1 558601 R 399739 CDS YP_001186026.1 146305561 5108148 559518..559793 1 NC_009439.1 TIGRFAM: putative polyhydroxyalkanoic acid system protein; putative polyhydroxyalkanoic acid system protein 559793 5108148 Pmen_0524 Pseudomonas mendocina ymp putative polyhydroxyalkanoic acid system protein YP_001186026.1 559518 D 399739 CDS YP_001186027.1 146305562 5108149 559965..560411 1 NC_009439.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein 560411 5108149 Pmen_0525 Pseudomonas mendocina ymp poly(hydroxyalkanoate) granule-associated protein YP_001186027.1 559965 D 399739 CDS YP_001186028.1 146305563 5108150 560422..561276 1 NC_009439.1 TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; poly(hydroxyalkanoate) granule-associated protein 561276 5108150 Pmen_0526 Pseudomonas mendocina ymp poly(hydroxyalkanoate) granule-associated protein YP_001186028.1 560422 D 399739 CDS YP_001186029.1 146305564 5108151 complement(561359..561973) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 561973 5108151 Pmen_0527 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001186029.1 561359 R 399739 CDS YP_001186030.1 146305565 5108152 complement(562044..563726) 1 NC_009439.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; poly(R)-hydroxyalkanoic acid synthase, class II 563726 5108152 Pmen_0528 Pseudomonas mendocina ymp poly(R)-hydroxyalkanoic acid synthase, class II YP_001186030.1 562044 R 399739 CDS YP_001186031.1 146305566 5108153 complement(563935..564792) 1 NC_009439.1 TIGRFAM: poly(3-hydroxyalkanoate) depolymerase; PFAM: alpha/beta hydrolase fold; poly(3-hydroxyalkanoate) depolymerase 564792 5108153 Pmen_0529 Pseudomonas mendocina ymp poly(3-hydroxyalkanoate) depolymerase YP_001186031.1 563935 R 399739 CDS YP_001186032.1 146305567 5108154 complement(564946..566625) 1 NC_009439.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class II; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; poly(R)-hydroxyalkanoic acid synthase, class II 566625 5108154 Pmen_0530 Pseudomonas mendocina ymp poly(R)-hydroxyalkanoic acid synthase, class II YP_001186032.1 564946 R 399739 CDS YP_001186033.1 146305568 5108155 complement(567015..567386) 1 NC_009439.1 PFAM: protein of unknown function DUF971; hypothetical protein 567386 5108155 Pmen_0531 Pseudomonas mendocina ymp hypothetical protein YP_001186033.1 567015 R 399739 CDS YP_001186034.1 146305569 5108156 complement(567468..568808) 1 NC_009439.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 568808 hslU 5108156 hslU Pseudomonas mendocina ymp ATP-dependent protease ATP-binding subunit HslU YP_001186034.1 567468 R 399739 CDS YP_001186035.1 146305570 5108157 complement(568848..569378) 1 NC_009439.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 569378 5108157 Pmen_0533 Pseudomonas mendocina ymp ATP-dependent protease peptidase subunit YP_001186035.1 568848 R 399739 CDS YP_001186036.1 146305571 5108158 complement(569475..570149) 1 NC_009439.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 570149 5108158 Pmen_0534 Pseudomonas mendocina ymp sporulation domain-containing protein YP_001186036.1 569475 R 399739 CDS YP_001186037.1 146305572 5108159 complement(570150..571889) 1 NC_009439.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 571889 argS 5108159 argS Pseudomonas mendocina ymp arginyl-tRNA synthetase YP_001186037.1 570150 R 399739 CDS YP_001186038.1 146305573 5108160 complement(572061..574292) 1 NC_009439.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 574292 5108160 Pmen_0536 Pseudomonas mendocina ymp primosome assembly protein PriA YP_001186038.1 572061 R 399739 CDS YP_001186039.1 146305574 5108161 574437..574649 1 NC_009439.1 PFAM: ribosomal protein L31; 50S ribosomal protein L31 574649 5108161 Pmen_0537 Pseudomonas mendocina ymp 50S ribosomal protein L31 YP_001186039.1 574437 D 399739 CDS YP_001186040.1 146305575 5108162 574676..575476 1 NC_009439.1 PFAM: nuclease (SNase domain protein); nuclease 575476 5108162 Pmen_0538 Pseudomonas mendocina ymp nuclease YP_001186040.1 574676 D 399739 CDS YP_001186041.1 146305576 5108163 575473..576909 1 NC_009439.1 PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 576909 5108163 Pmen_0539 Pseudomonas mendocina ymp peptidase M48, Ste24p YP_001186041.1 575473 D 399739 CDS YP_001186042.1 146305577 5108164 577014..578282 1 NC_009439.1 PFAM: malic enzyme domain protein; malic enzyme, NAD-binding; malate dehydrogenase 578282 5108164 Pmen_0540 Pseudomonas mendocina ymp malate dehydrogenase YP_001186042.1 577014 D 399739 CDS YP_001186043.1 146305578 5108165 complement(578348..580759) 1 NC_009439.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein 580759 5108165 Pmen_0541 Pseudomonas mendocina ymp 1A family penicillin-binding protein YP_001186043.1 578348 R 399739 CDS YP_001186044.1 146305579 5108166 580941..582005 1 NC_009439.1 TIGRFAM: type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 582005 5108166 Pmen_0542 Pseudomonas mendocina ymp type IV pilus assembly protein PilM YP_001186044.1 580941 D 399739 CDS YP_001186045.1 146305580 5108167 582005..582577 1 NC_009439.1 PFAM: Fimbrial assembly family protein; fimbrial assembly family protein 582577 5108167 Pmen_0543 Pseudomonas mendocina ymp fimbrial assembly family protein YP_001186045.1 582005 D 399739 CDS YP_001186046.1 146305581 5108168 582574..583194 1 NC_009439.1 PFAM: Pilus assembly protein, PilO; pilus assembly protein, PilO 583194 5108168 Pmen_0544 Pseudomonas mendocina ymp pilus assembly protein, PilO YP_001186046.1 582574 D 399739 CDS YP_001186047.1 146305582 5108169 583191..583718 1 NC_009439.1 PFAM: Pilus assembly protein, PilQ; pilus assembly protein, PilQ 583718 5108169 Pmen_0545 Pseudomonas mendocina ymp pilus assembly protein, PilQ YP_001186047.1 583191 D 399739 CDS YP_001186048.1 146305583 5108170 583774..585894 1 NC_009439.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; type IV pilus secretin PilQ 585894 5108170 Pmen_0546 Pseudomonas mendocina ymp type IV pilus secretin PilQ YP_001186048.1 583774 D 399739 CDS YP_001186049.1 146305584 5108171 585927..586418 1 NC_009439.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 586418 aroK 5108171 aroK Pseudomonas mendocina ymp shikimate kinase YP_001186049.1 585927 D 399739 CDS YP_001186050.1 146305585 5108172 586594..587697 1 NC_009439.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 587697 aroB 5108172 aroB Pseudomonas mendocina ymp 3-dehydroquinate synthase YP_001186050.1 586594 D 399739 CDS YP_001186051.1 146305586 5108173 587708..589309 1 NC_009439.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 589309 5108173 Pmen_0549 Pseudomonas mendocina ymp sporulation domain-containing protein YP_001186051.1 587708 D 399739 CDS YP_001186052.1 146305587 5108174 589547..593995 1 NC_009439.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 593995 gltB 5108174 gltB Pseudomonas mendocina ymp glutamate synthase subunit alpha YP_001186052.1 589547 D 399739 CDS YP_001186053.1 146305588 5108175 594030..595448 1 NC_009439.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 595448 gltD 5108175 gltD Pseudomonas mendocina ymp glutamate synthase subunit beta YP_001186053.1 594030 D 399739 CDS YP_001186054.1 146305589 5108176 595567..596634 1 NC_009439.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 596634 hemE 5108176 hemE Pseudomonas mendocina ymp uroporphyrinogen decarboxylase YP_001186054.1 595567 D 399739 CDS YP_001186055.1 146305590 5108177 596765..597535 1 NC_009439.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 597535 5108177 Pmen_0553 Pseudomonas mendocina ymp cobyrinic acid a,c-diamide synthase YP_001186055.1 596765 D 399739 CDS YP_001186056.1 146305591 5108178 complement(597581..598378) 1 NC_009439.1 PFAM: UspA domain protein; UspA domain-containing protein 598378 5108178 Pmen_0554 Pseudomonas mendocina ymp UspA domain-containing protein YP_001186056.1 597581 R 399739 CDS YP_001186057.1 146305592 5108179 complement(598502..598945) 1 NC_009439.1 hypothetical protein 598945 5108179 Pmen_0555 Pseudomonas mendocina ymp hypothetical protein YP_001186057.1 598502 R 399739 CDS YP_001186058.1 146305593 5108180 complement(599167..599601) 1 NC_009439.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 599601 5108180 Pmen_0556 Pseudomonas mendocina ymp thioredoxin YP_001186058.1 599167 R 399739 CDS YP_001186059.1 146305594 5108181 complement(599660..601450) 1 NC_009439.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; citrate transporter 601450 5108181 Pmen_0557 Pseudomonas mendocina ymp citrate transporter YP_001186059.1 599660 R 399739 CDS YP_001186060.1 146305595 5108182 complement(601741..603204) 1 NC_009439.1 PFAM: protein of unknown function UPF0061; hypothetical protein 603204 5108182 Pmen_0558 Pseudomonas mendocina ymp hypothetical protein YP_001186060.1 601741 R 399739 CDS YP_001186061.1 146305596 5108183 complement(603216..606551) 1 NC_009439.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 606551 5108183 Pmen_0559 Pseudomonas mendocina ymp potassium efflux protein KefA YP_001186061.1 603216 R 399739 CDS YP_001186062.1 146305597 5108184 complement(606653..608398) 1 NC_009439.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 608398 5108184 Pmen_0560 Pseudomonas mendocina ymp potassium/proton antiporter YP_001186062.1 606653 R 399739 CDS YP_001186063.1 146305598 5108185 complement(608561..610429) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 610429 5108185 Pmen_0561 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001186063.1 608561 R 399739 CDS YP_001186064.1 146305599 5108186 complement(610486..611622) 1 NC_009439.1 PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 611622 5108186 Pmen_0562 Pseudomonas mendocina ymp 2-nitropropane dioxygenase YP_001186064.1 610486 R 399739 CDS YP_001186065.1 146305600 5108187 611804..614530 1 NC_009439.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; type I restriction-modification system, M subunit 614530 5108187 Pmen_0563 Pseudomonas mendocina ymp type I restriction-modification system, M subunit YP_001186065.1 611804 D 399739 CDS YP_001186066.1 146305601 5108188 614523..615770 1 NC_009439.1 PFAM: restriction modification system DNA specificity domain; restriction modification system DNA specificity subunit 615770 5108188 Pmen_0564 Pseudomonas mendocina ymp restriction modification system DNA specificity subunit YP_001186066.1 614523 D 399739 CDS YP_001186067.1 146305602 5108189 615763..616416 1 NC_009439.1 hypothetical protein 616416 5108189 Pmen_0565 Pseudomonas mendocina ymp hypothetical protein YP_001186067.1 615763 D 399739 CDS YP_001186068.1 146305603 5108190 616413..617495 1 NC_009439.1 PFAM: Appr-1-p processing domain protein; appr-1-p processing domain-containing protein 617495 5108190 Pmen_0566 Pseudomonas mendocina ymp appr-1-p processing domain-containing protein YP_001186068.1 616413 D 399739 CDS YP_001186069.1 146305604 5108191 617504..620767 1 NC_009439.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; HsdR family type I site-specific deoxyribonuclease 620767 5108191 Pmen_0567 Pseudomonas mendocina ymp HsdR family type I site-specific deoxyribonuclease YP_001186069.1 617504 D 399739 CDS YP_001186070.1 146305605 5108192 620768..621475 1 NC_009439.1 PFAM: protein of unknown function DUF45; hypothetical protein 621475 5108192 Pmen_0568 Pseudomonas mendocina ymp hypothetical protein YP_001186070.1 620768 D 399739 CDS YP_001186071.1 146305606 5109532 621578..622426 1 NC_009439.1 PFAM: protein of unknown function DUF519; hypothetical protein 622426 5109532 Pmen_0569 Pseudomonas mendocina ymp hypothetical protein YP_001186071.1 621578 D 399739 CDS YP_001186072.1 146305607 5109533 complement(622503..623756) 1 NC_009439.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; metal dependent phosphohydrolase 623756 5109533 Pmen_0570 Pseudomonas mendocina ymp metal dependent phosphohydrolase YP_001186072.1 622503 R 399739 CDS YP_001186073.1 146305608 5109534 complement(623840..623974) 1 NC_009439.1 hypothetical protein 623974 5109534 Pmen_0571 Pseudomonas mendocina ymp hypothetical protein YP_001186073.1 623840 R 399739 CDS YP_001186074.1 146305609 5109535 complement(624048..624707) 1 NC_009439.1 TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 624707 5109535 Pmen_0572 Pseudomonas mendocina ymp peptide methionine sulfoxide reductase YP_001186074.1 624048 R 399739 CDS YP_001186075.1 146305610 5109536 complement(624759..627482) 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 627482 5109536 Pmen_0573 Pseudomonas mendocina ymp PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001186075.1 624759 R 399739 CDS YP_001186076.1 146305611 5109537 627618..628151 1 NC_009439.1 hypothetical protein 628151 5109537 Pmen_0574 Pseudomonas mendocina ymp hypothetical protein YP_001186076.1 627618 D 399739 CDS YP_001186077.1 146305612 5109538 complement(628304..630274) 1 NC_009439.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 630274 aceF 5109538 aceF Pseudomonas mendocina ymp dihydrolipoamide acetyltransferase YP_001186077.1 628304 R 399739 CDS YP_001186078.1 146305613 5109539 complement(630286..632931) 1 NC_009439.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 632931 aceE 5109539 aceE Pseudomonas mendocina ymp pyruvate dehydrogenase subunit E1 YP_001186078.1 630286 R 399739 CDS YP_001186079.1 146305614 5109540 633203..636145 1 NC_009439.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 636145 5109540 Pmen_0577 Pseudomonas mendocina ymp bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_001186079.1 633203 D 399739 CDS YP_001186080.1 146305615 5109541 636209..637132 1 NC_009439.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 637132 5109541 Pmen_0578 Pseudomonas mendocina ymp branched-chain amino acid aminotransferase YP_001186080.1 636209 D 399739 CDS YP_001186081.1 146305616 5109542 637193..638236 1 NC_009439.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase II 638236 5109542 Pmen_0579 Pseudomonas mendocina ymp lipopolysaccharide heptosyltransferase II YP_001186081.1 637193 D 399739 CDS YP_001186082.1 146305617 5109543 638238..639242 1 NC_009439.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase I 639242 5109543 Pmen_0580 Pseudomonas mendocina ymp lipopolysaccharide heptosyltransferase I YP_001186082.1 638238 D 399739 CDS YP_001186083.1 146305618 5109544 639252..640376 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 640376 5109544 Pmen_0581 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001186083.1 639252 D 399739 CDS YP_001186084.1 146305619 5109545 640382..641179 1 NC_009439.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 641179 5109545 Pmen_0582 Pseudomonas mendocina ymp lipopolysaccharide kinase YP_001186084.1 640382 D 399739 CDS YP_001186085.1 146305620 5109546 641179..641913 1 NC_009439.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 641913 5109546 Pmen_0583 Pseudomonas mendocina ymp lipopolysaccharide kinase YP_001186085.1 641179 D 399739 CDS YP_001186086.1 146305621 5109547 641910..642653 1 NC_009439.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 642653 5109547 Pmen_0584 Pseudomonas mendocina ymp lipopolysaccharide kinase YP_001186086.1 641910 D 399739 CDS YP_001186087.1 146305622 5109548 642653..644098 1 NC_009439.1 hypothetical protein 644098 5109548 Pmen_0585 Pseudomonas mendocina ymp hypothetical protein YP_001186087.1 642653 D 399739 CDS YP_001186088.1 146305623 5109549 644111..645865 1 NC_009439.1 PFAM: Carbamoyltransferase; carbamoyltransferase 645865 5109549 Pmen_0586 Pseudomonas mendocina ymp carbamoyltransferase YP_001186088.1 644111 D 399739 CDS YP_001186089.1 146305624 5109550 645852..646970 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 646970 5109550 Pmen_0587 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001186089.1 645852 D 399739 CDS YP_001186090.1 146305625 5109551 647007..647879 1 NC_009439.1 hypothetical protein 647879 5109551 Pmen_0588 Pseudomonas mendocina ymp hypothetical protein YP_001186090.1 647007 D 399739 CDS YP_001186091.1 146305626 5109552 647882..649027 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 649027 5109552 Pmen_0589 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001186091.1 647882 D 399739 CDS YP_001186092.1 146305627 5109553 649024..649908 1 NC_009439.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 649908 5109553 Pmen_0590 Pseudomonas mendocina ymp glycosyl transferase family protein YP_001186092.1 649024 D 399739 CDS YP_001186093.1 146305628 5109554 649911..650567 1 NC_009439.1 acetyltransferase 650567 5109554 Pmen_0591 Pseudomonas mendocina ymp acetyltransferase YP_001186093.1 649911 D 399739 CDS YP_001186094.1 146305629 5109556 652493..654334 1 NC_009439.1 TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 654334 5109556 Pmen_0594 Pseudomonas mendocina ymp lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA YP_001186094.1 652493 D 399739 CDS YP_001186095.1 146305630 5109557 654334..655230 1 NC_009439.1 PFAM: Mig-14 family protein; Mig-14 family protein 655230 5109557 Pmen_0595 Pseudomonas mendocina ymp Mig-14 family protein YP_001186095.1 654334 D 399739 CDS YP_001186096.1 146305631 5109558 655235..656623 1 NC_009439.1 PFAM: LmbE family protein; LmbE family protein 656623 5109558 Pmen_0596 Pseudomonas mendocina ymp LmbE family protein YP_001186096.1 655235 D 399739 CDS YP_001186097.1 146305632 5109559 656685..658106 1 NC_009439.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 658106 5109559 Pmen_0597 Pseudomonas mendocina ymp bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_001186097.1 656685 D 399739 CDS YP_001186098.1 146305633 5109560 658257..659537 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 659537 5109560 Pmen_0598 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001186098.1 658257 D 399739 CDS YP_001186099.1 146305634 5109561 659551..660762 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 660762 5109561 Pmen_0599 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001186099.1 659551 D 399739 CDS YP_001186100.1 146305635 5109562 complement(660813..661538) 1 NC_009439.1 PFAM: protein of unknown function DUF330; hypothetical protein 661538 5109562 Pmen_0600 Pseudomonas mendocina ymp hypothetical protein YP_001186100.1 660813 R 399739 CDS YP_001186101.1 146305636 5109563 complement(661710..663959) 1 NC_009439.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 663959 5109563 Pmen_0601 Pseudomonas mendocina ymp DNA topoisomerase IV subunit A YP_001186101.1 661710 R 399739 CDS YP_001186102.1 146305637 5109564 complement(663967..664491) 1 NC_009439.1 aspartyl protease-like protein 664491 5109564 Pmen_0602 Pseudomonas mendocina ymp aspartyl protease-like protein YP_001186102.1 663967 R 399739 CDS YP_001186103.1 146305638 5109565 complement(664488..665471) 1 NC_009439.1 hypothetical protein 665471 5109565 Pmen_0603 Pseudomonas mendocina ymp hypothetical protein YP_001186103.1 664488 R 399739 CDS YP_001186104.1 146305639 5109566 complement(665471..667369) 1 NC_009439.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 667369 5109566 Pmen_0604 Pseudomonas mendocina ymp DNA topoisomerase IV subunit B YP_001186104.1 665471 R 399739 CDS YP_001186105.1 146305640 5109567 complement(667385..667996) 1 NC_009439.1 PFAM: protein of unknown function UPF0227; hypothetical protein 667996 5109567 Pmen_0605 Pseudomonas mendocina ymp hypothetical protein YP_001186105.1 667385 R 399739 CDS YP_001186106.1 146305641 5109568 complement(668109..668924) 1 NC_009439.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; calcineurin phosphoesterase C-terminal domain-containing protein 668924 5109568 Pmen_0606 Pseudomonas mendocina ymp calcineurin phosphoesterase C-terminal domain-containing protein YP_001186106.1 668109 R 399739 CDS YP_001186107.1 146305642 5109569 complement(669071..669517) 1 NC_009439.1 PFAM: protein of unknown function DUF1249; hypothetical protein 669517 5109569 Pmen_0607 Pseudomonas mendocina ymp hypothetical protein YP_001186107.1 669071 R 399739 CDS YP_001186108.1 146305643 5109570 complement(669514..670113) 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 670113 5109570 Pmen_0608 Pseudomonas mendocina ymp NUDIX hydrolase YP_001186108.1 669514 R 399739 CDS YP_001186109.1 146305644 5109571 complement(670217..672100) 1 NC_009439.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 672100 5109571 Pmen_0609 Pseudomonas mendocina ymp thiamine biosynthesis protein ThiC YP_001186109.1 670217 R 399739 CDS YP_001186110.1 146305645 5109572 672523..673965 1 NC_009439.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 673965 5109572 Pmen_0610 Pseudomonas mendocina ymp TolC family type I secretion outer membrane protein YP_001186110.1 672523 D 399739 CDS YP_001186111.1 146305646 5109573 complement(674098..675363) 1 NC_009439.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 675363 5109573 Pmen_0611 Pseudomonas mendocina ymp 3-deoxy-D-manno-octulosonic-acid transferase YP_001186111.1 674098 R 399739 CDS YP_001186112.1 146305647 5109574 complement(675407..676294) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 676294 5109574 Pmen_0612 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186112.1 675407 R 399739 CDS YP_001186113.1 146305648 5109575 676383..676715 1 NC_009439.1 PFAM: small multidrug resistance protein; small multidrug resistance protein 676715 5109575 Pmen_0613 Pseudomonas mendocina ymp small multidrug resistance protein YP_001186113.1 676383 D 399739 CDS YP_001186114.1 146305649 5109576 676779..677954 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 677954 5109576 Pmen_0614 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001186114.1 676779 D 399739 CDS YP_001186115.1 146305650 5109577 677951..678763 1 NC_009439.1 PFAM: aldo/keto reductase; aldo/keto reductase 678763 5109577 Pmen_0615 Pseudomonas mendocina ymp aldo/keto reductase YP_001186115.1 677951 D 399739 CDS YP_001186116.1 146305651 5109578 678905..679816 1 NC_009439.1 hypothetical protein 679816 5109578 Pmen_0616 Pseudomonas mendocina ymp hypothetical protein YP_001186116.1 678905 D 399739 CDS YP_001186117.1 146305652 5109579 complement(680013..681545) 1 NC_009439.1 hypothetical protein 681545 5109579 Pmen_0617 Pseudomonas mendocina ymp hypothetical protein YP_001186117.1 680013 R 399739 CDS YP_001186118.1 146305653 5109580 681646..682935 1 NC_009439.1 TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase 682935 5109580 Pmen_0618 Pseudomonas mendocina ymp phosphoserine phosphatase YP_001186118.1 681646 D 399739 CDS YP_001186119.1 146305654 5109581 complement(682988..685057) 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 685057 5109581 Pmen_0619 Pseudomonas mendocina ymp response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_001186119.1 682988 R 399739 CDS YP_001186120.1 146305655 5109582 complement(685122..686924) 1 NC_009439.1 hypothetical protein 686924 5109582 Pmen_0620 Pseudomonas mendocina ymp hypothetical protein YP_001186120.1 685122 R 399739 CDS YP_001186121.1 146305656 5109583 complement(687091..687951) 1 NC_009439.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 687951 psd 5109583 psd Pseudomonas mendocina ymp phosphatidylserine decarboxylase YP_001186121.1 687091 R 399739 CDS YP_001186122.1 146305657 5109584 complement(688008..688823) 1 NC_009439.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 688823 5109584 Pmen_0622 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001186122.1 688008 R 399739 CDS YP_001186123.1 146305658 5109585 complement(688890..690413) 1 NC_009439.1 PFAM: HDOD; hypothetical protein 690413 5109585 Pmen_0623 Pseudomonas mendocina ymp hypothetical protein YP_001186123.1 688890 R 399739 CDS YP_001186124.1 146305659 5109586 690531..691382 1 NC_009439.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 691382 5109586 Pmen_0624 Pseudomonas mendocina ymp flagellar motor protein MotA YP_001186124.1 690531 D 399739 CDS YP_001186125.1 146305660 5109587 691399..692388 1 NC_009439.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 692388 motB 5109587 motB Pseudomonas mendocina ymp flagellar motor protein MotB YP_001186125.1 691399 D 399739 CDS YP_001186126.1 146305661 5109588 complement(692382..693413) 1 NC_009439.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 693413 5109588 Pmen_0626 Pseudomonas mendocina ymp ribosome-associated GTPase YP_001186126.1 692382 R 399739 CDS YP_001186127.1 146305662 5109589 693550..694293 1 NC_009439.1 hypothetical protein 694293 5109589 Pmen_0627 Pseudomonas mendocina ymp hypothetical protein YP_001186127.1 693550 D 399739 CDS YP_001186128.1 146305663 5109590 694350..694892 1 NC_009439.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 694892 5109590 Pmen_0628 Pseudomonas mendocina ymp oligoribonuclease YP_001186128.1 694350 D 399739 CDS YP_001186129.1 146305664 5109591 complement(694998..696071) 1 NC_009439.1 TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; putative iron-sulfur cluster binding protein 696071 5109591 Pmen_0629 Pseudomonas mendocina ymp putative iron-sulfur cluster binding protein YP_001186129.1 694998 R 399739 CDS YP_001186130.1 146305665 5109592 696133..697632 1 NC_009439.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; carbohydrate kinase 697632 5109592 Pmen_0630 Pseudomonas mendocina ymp carbohydrate kinase YP_001186130.1 696133 D 399739 CDS YP_001186131.1 146305666 5109593 697620..698087 1 NC_009439.1 PFAM: protein of unknown function UPF0079; hypothetical protein 698087 5109593 Pmen_0631 Pseudomonas mendocina ymp hypothetical protein YP_001186131.1 697620 D 399739 CDS YP_001186132.1 146305667 5109594 698110..699525 1 NC_009439.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 699525 5109594 Pmen_0632 Pseudomonas mendocina ymp N-acetylmuramoyl-L-alanine amidase YP_001186132.1 698110 D 399739 CDS YP_001186133.1 146305668 5109595 699534..701405 1 NC_009439.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 701405 mutL 5109595 mutL Pseudomonas mendocina ymp DNA mismatch repair protein YP_001186133.1 699534 D 399739 CDS YP_001186134.1 146305669 5109596 701405..702379 1 NC_009439.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 702379 miaA 5109596 miaA Pseudomonas mendocina ymp tRNA delta(2)-isopentenylpyrophosphate transferase YP_001186134.1 701405 D 399739 CDS YP_001186135.1 146305670 5109597 702481..702741 1 NC_009439.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 702741 hfq 5109597 hfq Pseudomonas mendocina ymp RNA-binding protein Hfq YP_001186135.1 702481 D 399739 CDS YP_001186136.1 146305671 5109598 702754..704055 1 NC_009439.1 PFAM: GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 704055 5109598 Pmen_0636 Pseudomonas mendocina ymp HSR1-like GTP-binding protein YP_001186136.1 702754 D 399739 CDS YP_001186137.1 146305672 5109599 704153..705322 1 NC_009439.1 TIGRFAM: HflK protein; PFAM: band 7 protein; HflK protein 705322 5109599 Pmen_0637 Pseudomonas mendocina ymp HflK protein YP_001186137.1 704153 D 399739 CDS YP_001186138.1 146305673 5109600 705322..706191 1 NC_009439.1 TIGRFAM: HflC protein; PFAM: band 7 protein; HflC protein 706191 5109600 Pmen_0638 Pseudomonas mendocina ymp HflC protein YP_001186138.1 705322 D 399739 CDS YP_001186139.1 146305674 5109601 706332..706517 1 NC_009439.1 hypothetical protein 706517 5109601 Pmen_0639 Pseudomonas mendocina ymp hypothetical protein YP_001186139.1 706332 D 399739 CDS YP_001186140.1 146305675 5109602 706555..707742 1 NC_009439.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 707742 hisZ 5109602 hisZ Pseudomonas mendocina ymp ATP phosphoribosyltransferase regulatory subunit YP_001186140.1 706555 D 399739 CDS YP_001186141.1 146305676 5109603 707799..709094 1 NC_009439.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 709094 5109603 Pmen_0641 Pseudomonas mendocina ymp adenylosuccinate synthetase YP_001186141.1 707799 D 399739 CDS YP_001186142.1 146305677 5109604 709303..711237 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 711237 5109604 Pmen_0642 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001186142.1 709303 D 399739 CDS YP_001186143.1 146305678 5106941 711813..714299 1 NC_009439.1 TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; RNAse R 714299 5106941 Pmen_0643 Pseudomonas mendocina ymp RNAse R YP_001186143.1 711813 D 399739 CDS YP_001186144.1 146305679 5109606 714296..715048 1 NC_009439.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; RNA methyltransferase 715048 5109606 Pmen_0644 Pseudomonas mendocina ymp RNA methyltransferase YP_001186144.1 714296 D 399739 CDS YP_001186145.1 146305680 5109607 715224..715646 1 NC_009439.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 715646 rpsF 5109607 rpsF Pseudomonas mendocina ymp 30S ribosomal protein S6 YP_001186145.1 715224 D 399739 CDS YP_001186146.1 146305681 5109608 715675..715905 1 NC_009439.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 715905 rpsR 5109608 rpsR Pseudomonas mendocina ymp 30S ribosomal protein S18 YP_001186146.1 715675 D 399739 CDS YP_001186147.1 146305682 5109609 715942..716835 1 NC_009439.1 hypothetical protein 716835 5109609 Pmen_0647 Pseudomonas mendocina ymp hypothetical protein YP_001186147.1 715942 D 399739 CDS YP_001186148.1 146305683 5109610 716857..717303 1 NC_009439.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 717303 rplI 5109610 rplI Pseudomonas mendocina ymp 50S ribosomal protein L9 YP_001186148.1 716857 D 399739 CDS YP_001186149.1 146305684 5108979 717423..718817 1 NC_009439.1 unwinds double stranded DNA; replicative DNA helicase 718817 5108979 Pmen_0649 Pseudomonas mendocina ymp replicative DNA helicase YP_001186149.1 717423 D 399739 CDS YP_001186150.1 146305685 5108980 718895..719971 1 NC_009439.1 TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 719971 5108980 Pmen_0650 Pseudomonas mendocina ymp alanine racemase YP_001186150.1 718895 D 399739 CDS YP_001186151.1 146305686 5108981 complement(719994..721877) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; diguanylate cyclase 721877 5108981 Pmen_0651 Pseudomonas mendocina ymp diguanylate cyclase YP_001186151.1 719994 R 399739 CDS YP_001186152.1 146305687 5108982 722078..724369 1 NC_009439.1 PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 724369 5108982 Pmen_0652 Pseudomonas mendocina ymp hypothetical protein YP_001186152.1 722078 D 399739 CDS YP_001186153.1 146305688 5108983 724487..725734 1 NC_009439.1 hypothetical protein 725734 5108983 Pmen_0653 Pseudomonas mendocina ymp hypothetical protein YP_001186153.1 724487 D 399739 CDS YP_001186154.1 146305689 5108984 725731..726837 1 NC_009439.1 hypothetical protein 726837 5108984 Pmen_0654 Pseudomonas mendocina ymp hypothetical protein YP_001186154.1 725731 D 399739 CDS YP_001186155.1 146305690 5108985 727025..730318 1 NC_009439.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 730318 5108985 Pmen_0655 Pseudomonas mendocina ymp transglutaminase domain-containing protein YP_001186155.1 727025 D 399739 CDS YP_001186156.1 146305691 5108986 730430..732916 1 NC_009439.1 PFAM: protein of unknown function DUF403; protein of unknown function DUF404; protein of unknown function DUF407; hypothetical protein 732916 5108986 Pmen_0656 Pseudomonas mendocina ymp hypothetical protein YP_001186156.1 730430 D 399739 CDS YP_001186157.1 146305692 5108987 732913..733806 1 NC_009439.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 733806 5108987 Pmen_0657 Pseudomonas mendocina ymp transglutaminase domain-containing protein YP_001186157.1 732913 D 399739 CDS YP_001186158.1 146305693 5108988 complement(733845..734294) 1 NC_009439.1 TIGRFAM: Azurin; PFAM: blue (type 1) copper domain protein; azurin 734294 5108988 Pmen_0658 Pseudomonas mendocina ymp azurin YP_001186158.1 733845 R 399739 CDS YP_001186159.1 146305694 5108989 complement(734684..735619) 1 NC_009439.1 PFAM: protein of unknown function DUF808; hypothetical protein 735619 5108989 Pmen_0659 Pseudomonas mendocina ymp hypothetical protein YP_001186159.1 734684 R 399739 CDS YP_001186160.1 146305695 5108990 complement(735685..736272) 1 NC_009439.1 PFAM: conserved hypothetical protein 730; hypothetical protein 736272 5108990 Pmen_0660 Pseudomonas mendocina ymp hypothetical protein YP_001186160.1 735685 R 399739 CDS YP_001186161.1 146305696 5108991 complement(736509..737123) 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 737123 5108991 Pmen_0661 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001186161.1 736509 R 399739 CDS YP_001186162.1 146305697 5108992 complement(737645..738559) 1 NC_009439.1 PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 738559 5108992 Pmen_0662 Pseudomonas mendocina ymp glycerophosphodiester phosphodiesterase YP_001186162.1 737645 R 399739 CDS YP_001186163.1 146305698 5108993 complement(738702..739274) 1 NC_009439.1 PFAM: HupE/UreJ protein; HupE/UreJ protein 739274 5108993 Pmen_0663 Pseudomonas mendocina ymp HupE/UreJ protein YP_001186163.1 738702 R 399739 CDS YP_001186164.1 146305699 5108994 complement(739296..739910) 1 NC_009439.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; urease accessory protein UreG 739910 5108994 Pmen_0664 Pseudomonas mendocina ymp urease accessory protein UreG YP_001186164.1 739296 R 399739 CDS YP_001186165.1 146305700 5108995 complement(739927..740601) 1 NC_009439.1 PFAM: Urease accessory protein UreF; urease accessory protein UreF 740601 5108995 Pmen_0665 Pseudomonas mendocina ymp urease accessory protein UreF YP_001186165.1 739927 R 399739 CDS YP_001186166.1 146305701 5108996 complement(740639..741139) 1 NC_009439.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 741139 ureE 5108996 ureE Pseudomonas mendocina ymp urease accessory protein UreE YP_001186166.1 740639 R 399739 CDS YP_001186167.1 146305702 5108997 complement(741303..742001) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 742001 5108997 Pmen_0667 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001186167.1 741303 R 399739 CDS YP_001186168.1 146305703 5108998 742087..743175 1 NC_009439.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin 743175 5108998 Pmen_0668 Pseudomonas mendocina ymp ferredoxin YP_001186168.1 742087 D 399739 CDS YP_001186169.1 146305704 5108999 743172..744254 1 NC_009439.1 PFAM: fatty acid desaturase; fatty acid desaturase 744254 5108999 Pmen_0669 Pseudomonas mendocina ymp fatty acid desaturase YP_001186169.1 743172 D 399739 CDS YP_001186170.1 146305705 5109000 complement(744316..744795) 1 NC_009439.1 hypothetical protein 744795 5109000 Pmen_0670 Pseudomonas mendocina ymp hypothetical protein YP_001186170.1 744316 R 399739 CDS YP_001186171.1 146305706 5109001 745070..745969 1 NC_009439.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 745969 5109001 Pmen_0671 Pseudomonas mendocina ymp auxin efflux carrier YP_001186171.1 745070 D 399739 CDS YP_001186172.1 146305707 5109002 746063..747010 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 747010 5109002 Pmen_0672 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001186172.1 746063 D 399739 CDS YP_001186173.1 146305708 5109003 747169..747675 1 NC_009439.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 747675 5109003 Pmen_0673 Pseudomonas mendocina ymp tripartite ATP-independent periplasmic transporter DctQ YP_001186173.1 747169 D 399739 CDS YP_001186174.1 146305709 5109004 747675..749000 1 NC_009439.1 PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 749000 5109004 Pmen_0674 Pseudomonas mendocina ymp TRAP C4-dicarboxylate transport system permease DctM YP_001186174.1 747675 D 399739 CDS YP_001186175.1 146305710 5109005 749136..750173 1 NC_009439.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 750173 5109005 Pmen_0675 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001186175.1 749136 D 399739 CDS YP_001186176.1 146305711 5109006 750514..751887 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; L-glutamine synthetase 751887 5109006 Pmen_0676 Pseudomonas mendocina ymp L-glutamine synthetase YP_001186176.1 750514 D 399739 CDS YP_001186177.1 146305712 5109007 751987..753375 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 753375 5109007 Pmen_0677 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001186177.1 751987 D 399739 CDS YP_001186178.1 146305713 5109008 753384..754553 1 NC_009439.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; iron-containing alcohol dehydrogenase 754553 5109008 Pmen_0678 Pseudomonas mendocina ymp iron-containing alcohol dehydrogenase YP_001186178.1 753384 D 399739 CDS YP_001186179.1 146305714 5109009 complement(754662..755195) 1 NC_009439.1 hypothetical protein 755195 5109009 Pmen_0679 Pseudomonas mendocina ymp hypothetical protein YP_001186179.1 754662 R 399739 CDS YP_001186180.1 146305715 5109010 complement(755251..755733) 1 NC_009439.1 hypothetical protein 755733 5109010 Pmen_0680 Pseudomonas mendocina ymp hypothetical protein YP_001186180.1 755251 R 399739 CDS YP_001186181.1 146305716 5109011 complement(755734..756090) 1 NC_009439.1 hypothetical protein 756090 5109011 Pmen_0681 Pseudomonas mendocina ymp hypothetical protein YP_001186181.1 755734 R 399739 CDS YP_001186182.1 146305717 5109012 complement(756198..757463) 1 NC_009439.1 molecular chaperone-like protein 757463 5109012 Pmen_0682 Pseudomonas mendocina ymp molecular chaperone-like protein YP_001186182.1 756198 R 399739 CDS YP_001186183.1 146305718 5109013 complement(757531..758505) 1 NC_009439.1 hypothetical protein 758505 5109013 Pmen_0683 Pseudomonas mendocina ymp hypothetical protein YP_001186183.1 757531 R 399739 CDS YP_001186184.1 146305719 5109014 complement(758698..759135) 1 NC_009439.1 hypothetical protein 759135 5109014 Pmen_0684 Pseudomonas mendocina ymp hypothetical protein YP_001186184.1 758698 R 399739 CDS YP_001186185.1 146305720 5109015 complement(759170..759898) 1 NC_009439.1 hypothetical protein 759898 5109015 Pmen_0685 Pseudomonas mendocina ymp hypothetical protein YP_001186185.1 759170 R 399739 CDS YP_001186186.1 146305721 5109016 760066..760989 1 NC_009439.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 760989 5109016 Pmen_0686 Pseudomonas mendocina ymp periplasmic binding protein/LacI transcriptional regulator YP_001186186.1 760066 D 399739 CDS YP_001186187.1 146305722 5109017 761069..761836 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 761836 5109017 Pmen_0687 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186187.1 761069 D 399739 CDS YP_001186188.1 146305723 5109018 761918..762919 1 NC_009439.1 PFAM: type II secretion system protein; type II secretion system protein 762919 5109018 Pmen_0688 Pseudomonas mendocina ymp type II secretion system protein YP_001186188.1 761918 D 399739 CDS YP_001186189.1 146305724 5109019 763047..763919 1 NC_009439.1 2,3-dimethylmalate lyase 763919 5109019 Pmen_0689 Pseudomonas mendocina ymp 2,3-dimethylmalate lyase YP_001186189.1 763047 D 399739 CDS YP_001186190.1 146305725 5109020 763989..764255 1 NC_009439.1 TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; PFAM: zinc finger, DksA/TraR C4-type; hypothetical protein 764255 5109020 Pmen_0690 Pseudomonas mendocina ymp hypothetical protein YP_001186190.1 763989 D 399739 CDS YP_001186191.1 146305726 5109021 764334..764777 1 NC_009439.1 PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 764777 5109021 Pmen_0691 Pseudomonas mendocina ymp hemerythrin HHE cation binding domain-containing protein YP_001186191.1 764334 D 399739 CDS YP_001186192.1 146305727 5109022 complement(764817..766517) 1 NC_009439.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 766517 ureC 5109022 ureC Pseudomonas mendocina ymp urease subunit alpha YP_001186192.1 764817 R 399739 CDS YP_001186193.1 146305728 5109023 complement(766605..766910) 1 NC_009439.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta 766910 ureB 5109023 ureB Pseudomonas mendocina ymp urease subunit beta YP_001186193.1 766605 R 399739 CDS YP_001186194.1 146305729 5109024 complement(766918..767418) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 767418 5109024 Pmen_0694 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001186194.1 766918 R 399739 CDS YP_001186195.1 146305730 5109025 complement(767422..767724) 1 NC_009439.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 767724 ureA 5109025 ureA Pseudomonas mendocina ymp urease subunit gamma YP_001186195.1 767422 R 399739 CDS YP_001186196.1 146305731 5109026 complement(767910..768746) 1 NC_009439.1 PFAM: Urease accessory protein UreD; urease accessory protein UreD 768746 5109026 Pmen_0696 Pseudomonas mendocina ymp urease accessory protein UreD YP_001186196.1 767910 R 399739 CDS YP_001186197.1 146305732 5109027 complement(768984..769682) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 769682 5109027 Pmen_0697 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186197.1 768984 R 399739 CDS YP_001186198.1 146305733 5109028 complement(769771..770613) 1 NC_009439.1 PFAM: ABC transporter related; ABC transporter-like protein 770613 5109028 Pmen_0698 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186198.1 769771 R 399739 CDS YP_001186199.1 146305734 5109029 complement(770610..771701) 1 NC_009439.1 PFAM: inner-membrane translocator; inner-membrane translocator 771701 5109029 Pmen_0699 Pseudomonas mendocina ymp inner-membrane translocator YP_001186199.1 770610 R 399739 CDS YP_001186200.1 146305735 5109030 complement(771701..773269) 1 NC_009439.1 PFAM: inner-membrane translocator; SMART: PBS lyase HEAT domain protein repeat-containing protein; inner-membrane translocator 773269 5109030 Pmen_0700 Pseudomonas mendocina ymp inner-membrane translocator YP_001186200.1 771701 R 399739 CDS YP_001186201.1 146305736 5109031 complement(773427..774692) 1 NC_009439.1 branched chain amino acid ABC transporter substrate-binding protein 774692 5109031 Pmen_0701 Pseudomonas mendocina ymp branched chain amino acid ABC transporter substrate-binding protein YP_001186201.1 773427 R 399739 CDS YP_001186202.1 146305737 5109032 complement(774767..775489) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 775489 5109032 Pmen_0702 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001186202.1 774767 R 399739 CDS YP_001186203.1 146305738 5109033 complement(775491..779120) 1 NC_009439.1 TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; urea amidolyase-like protein 779120 5109033 Pmen_0703 Pseudomonas mendocina ymp urea amidolyase-like protein YP_001186203.1 775491 R 399739 CDS YP_001186204.1 146305739 5109034 complement(779238..781052) 1 NC_009439.1 catalyzes the hydrolysis of allophanate; allophanate hydrolase 781052 5109034 Pmen_0704 Pseudomonas mendocina ymp allophanate hydrolase YP_001186204.1 779238 R 399739 CDS YP_001186205.1 146305740 5109035 complement(781313..781909) 1 NC_009439.1 PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 781909 5109035 Pmen_0705 Pseudomonas mendocina ymp multiple antibiotic resistance (MarC)-like protein YP_001186205.1 781313 R 399739 CDS YP_001186206.1 146305741 5109036 complement(781943..784729) 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; integral membrane sensor hybrid histidine kinase 784729 5109036 Pmen_0706 Pseudomonas mendocina ymp integral membrane sensor hybrid histidine kinase YP_001186206.1 781943 R 399739 CDS YP_001186207.1 146305742 5109037 complement(784839..786128) 1 NC_009439.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 786128 5109037 Pmen_0707 Pseudomonas mendocina ymp phosphoribosylamine--glycine ligase YP_001186207.1 784839 R 399739 CDS YP_001186208.1 146305743 5109038 complement(786348..787955) 1 NC_009439.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 787955 purH 5109038 purH Pseudomonas mendocina ymp bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001186208.1 786348 R 399739 CDS YP_001186209.1 146305744 5109039 complement(788027..788347) 1 NC_009439.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 788347 fis 5109039 fis Pseudomonas mendocina ymp DNA-binding protein Fis YP_001186209.1 788027 R 399739 CDS YP_001186210.1 146305745 5109040 complement(788344..789342) 1 NC_009439.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; nifR3 family TIM-barrel protein 789342 5109040 Pmen_0710 Pseudomonas mendocina ymp nifR3 family TIM-barrel protein YP_001186210.1 788344 R 399739 CDS YP_001186211.1 146305746 5109041 complement(789570..790844) 1 NC_009439.1 TIGRFAM: MJ0042 family finger-like protein; Zinc finger-domain-containing protein 790844 5109041 Pmen_0711 Pseudomonas mendocina ymp Zinc finger-domain-containing protein YP_001186211.1 789570 R 399739 CDS YP_001186212.1 146305747 5109042 complement(791002..791880) 1 NC_009439.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 791880 prmA 5109042 prmA Pseudomonas mendocina ymp 50S ribosomal protein L11 methyltransferase YP_001186212.1 791002 R 399739 CDS YP_001186213.1 146305748 5109043 complement(792020..793375) 1 NC_009439.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 793375 5109043 Pmen_0713 Pseudomonas mendocina ymp acetyl-CoA carboxylase biotin carboxylase subunit YP_001186213.1 792020 R 399739 CDS YP_001186214.1 146305749 5109044 complement(793393..793857) 1 NC_009439.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 793857 5109044 Pmen_0714 Pseudomonas mendocina ymp acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_001186214.1 793393 R 399739 CDS YP_001186215.1 146305750 5109045 complement(793908..794354) 1 NC_009439.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 794354 5109045 Pmen_0715 Pseudomonas mendocina ymp 3-dehydroquinate dehydratase YP_001186215.1 793908 R 399739 CDS YP_001186216.1 146305751 5109046 complement(794498..796285) 1 NC_009439.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein 796285 dipZ 5109046 dipZ Pseudomonas mendocina ymp thiol:disulfide interchange protein YP_001186216.1 794498 R 399739 CDS YP_001186217.1 146305752 5109047 complement(796443..798407) 1 NC_009439.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 798407 5109047 Pmen_0717 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001186217.1 796443 R 399739 CDS YP_001186218.1 146305753 5109048 complement(798517..799845) 1 NC_009439.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 799845 5109048 Pmen_0718 Pseudomonas mendocina ymp TolC family type I secretion outer membrane protein YP_001186218.1 798517 R 399739 CDS YP_001186219.1 146305754 5109049 complement(799849..801165) 1 NC_009439.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 801165 5109049 Pmen_0719 Pseudomonas mendocina ymp HlyD family type I secretion membrane fusion protein YP_001186219.1 799849 R 399739 CDS YP_001186220.1 146305755 5109050 complement(801175..802893) 1 NC_009439.1 TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; type I secretion system ATPase 802893 5109050 Pmen_0720 Pseudomonas mendocina ymp type I secretion system ATPase YP_001186220.1 801175 R 399739 CDS YP_001186221.1 146305756 5109051 complement(803022..808316) 1 NC_009439.1 PFAM: Hemolysin-type calcium-binding region; hemolysin-type calcium-binding protein 808316 5109051 Pmen_0721 Pseudomonas mendocina ymp hemolysin-type calcium-binding protein YP_001186221.1 803022 R 399739 CDS YP_001186222.1 146305757 5109052 complement(808572..811127) 1 NC_009439.1 PFAM: Hemolysin-type calcium-binding region; hemolysin-type calcium-binding protein 811127 5109052 Pmen_0722 Pseudomonas mendocina ymp hemolysin-type calcium-binding protein YP_001186222.1 808572 R 399739 CDS YP_001186223.1 146305758 5109053 complement(811263..812885) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 812885 5109053 Pmen_0723 Pseudomonas mendocina ymp response regulator receiver modulated diguanylate cyclase YP_001186223.1 811263 R 399739 CDS YP_001186224.1 146305759 5109054 813143..814201 1 NC_009439.1 hypothetical protein 814201 5109054 Pmen_0724 Pseudomonas mendocina ymp hypothetical protein YP_001186224.1 813143 D 399739 CDS YP_001186225.1 146305760 5109055 814201..814737 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 814737 5109055 Pmen_0725 Pseudomonas mendocina ymp NUDIX hydrolase YP_001186225.1 814201 D 399739 CDS YP_001186226.1 146305761 5109056 815016..815450 1 NC_009439.1 PFAM: translation initiation factor SUI1; translation initiation factor 1 (eIF-1/SUI1) 815450 5109056 Pmen_0726 Pseudomonas mendocina ymp translation initiation factor 1 (eIF-1/SUI1) YP_001186226.1 815016 D 399739 CDS YP_001186227.1 146305762 5109057 815573..817486 1 NC_009439.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 817486 5109057 Pmen_0727 Pseudomonas mendocina ymp arginine decarboxylase YP_001186227.1 815573 D 399739 CDS YP_001186228.1 146305763 5108822 complement(817548..818003) 1 NC_009439.1 hypothetical protein 818003 5108822 Pmen_0728 Pseudomonas mendocina ymp hypothetical protein YP_001186228.1 817548 R 399739 CDS YP_001186229.1 146305764 5108823 complement(818038..819387) 1 NC_009439.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 819387 5108823 Pmen_0729 Pseudomonas mendocina ymp MATE efflux family protein YP_001186229.1 818038 R 399739 CDS YP_001186230.1 146305765 5108824 819463..824457 1 NC_009439.1 PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; alpha-2-macroglobulin domain-containing protein 824457 5108824 Pmen_0730 Pseudomonas mendocina ymp alpha-2-macroglobulin domain-containing protein YP_001186230.1 819463 D 399739 CDS YP_001186231.1 146305766 5108825 824542..825072 1 NC_009439.1 PFAM: protein of unknown function DUF1568; hypothetical protein 825072 5108825 Pmen_0731 Pseudomonas mendocina ymp hypothetical protein YP_001186231.1 824542 D 399739 CDS YP_001186232.1 146305767 5108826 825145..827469 1 NC_009439.1 penicillin-insensitive transglycosylase/transpeptidase; penicillin-binding protein 1C 827469 5108826 Pmen_0732 Pseudomonas mendocina ymp penicillin-binding protein 1C YP_001186232.1 825145 D 399739 CDS YP_001186233.1 146305768 5108827 827538..828305 1 NC_009439.1 amino acid ABC transporter periplasmic protein 828305 5108827 Pmen_0733 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001186233.1 827538 D 399739 CDS YP_001186234.1 146305769 5108828 828453..830384 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 830384 5108828 Pmen_0734 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001186234.1 828453 D 399739 CDS YP_001186235.1 146305770 5108829 complement(830433..831560) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 831560 5108829 Pmen_0735 Pseudomonas mendocina ymp diguanylate cyclase YP_001186235.1 830433 R 399739 CDS YP_001186236.1 146305771 5108830 complement(831722..832171) 1 NC_009439.1 PFAM: protein of unknown function DUF606; hypothetical protein 832171 5108830 Pmen_0736 Pseudomonas mendocina ymp hypothetical protein YP_001186236.1 831722 R 399739 CDS YP_001186237.1 146305772 5108831 complement(832208..832693) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 832693 5108831 Pmen_0737 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001186237.1 832208 R 399739 CDS YP_001186238.1 146305773 5108832 complement(832710..833264) 1 NC_009439.1 hypothetical protein 833264 5108832 Pmen_0738 Pseudomonas mendocina ymp hypothetical protein YP_001186238.1 832710 R 399739 CDS YP_001186239.1 146305774 5108833 complement(833287..833868) 1 NC_009439.1 hypothetical protein 833868 5108833 Pmen_0739 Pseudomonas mendocina ymp hypothetical protein YP_001186239.1 833287 R 399739 CDS YP_001186240.1 146305775 5108834 complement(833944..834693) 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 834693 5108834 Pmen_0740 Pseudomonas mendocina ymp type 11 methyltransferase YP_001186240.1 833944 R 399739 CDS YP_001186241.1 146305776 5108835 complement(834690..834995) 1 NC_009439.1 hypothetical protein 834995 5108835 Pmen_0741 Pseudomonas mendocina ymp hypothetical protein YP_001186241.1 834690 R 399739 CDS YP_001186242.1 146305777 5108836 complement(835136..835993) 1 NC_009439.1 PFAM: MaoC domain protein dehydratase; dehydratase 835993 5108836 Pmen_0742 Pseudomonas mendocina ymp dehydratase YP_001186242.1 835136 R 399739 CDS YP_001186243.1 146305778 5108837 836183..837175 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 837175 5108837 Pmen_0743 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001186243.1 836183 D 399739 CDS YP_001186244.1 146305779 5108838 complement(837314..838669) 1 NC_009439.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 838669 fabG 5108838 fabG Pseudomonas mendocina ymp 3-ketoacyl-ACP reductase YP_001186244.1 837314 R 399739 CDS YP_001186245.1 146305780 5108839 838896..840173 1 NC_009439.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 840173 5108839 Pmen_0745 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001186245.1 838896 D 399739 CDS YP_001186246.1 146305781 5108840 840571..842010 1 NC_009439.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I 842010 5108840 Pmen_0746 Pseudomonas mendocina ymp cytochrome bd ubiquinol oxidase subunit I YP_001186246.1 840571 D 399739 CDS YP_001186247.1 146305782 5108841 842013..843020 1 NC_009439.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II 843020 5108841 Pmen_0747 Pseudomonas mendocina ymp cytochrome d ubiquinol oxidase subunit II YP_001186247.1 842013 D 399739 CDS YP_001186248.1 146305783 5108842 843174..843323 1 NC_009439.1 hypothetical protein 843323 5108842 Pmen_0748 Pseudomonas mendocina ymp hypothetical protein YP_001186248.1 843174 D 399739 CDS YP_001186249.1 146305784 5108843 843393..844835 1 NC_009439.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 844835 5108843 Pmen_0749 Pseudomonas mendocina ymp C69 family peptidase YP_001186249.1 843393 D 399739 CDS YP_001186250.1 146305785 5108844 844835..846154 1 NC_009439.1 Zn-dependent protease-like protein 846154 5108844 Pmen_0750 Pseudomonas mendocina ymp Zn-dependent protease-like protein YP_001186250.1 844835 D 399739 CDS YP_001186251.1 146305786 5108845 complement(846160..847293) 1 NC_009439.1 PFAM: methyltransferase small; 16S rRNA m(2)G 1207 methyltransferase 847293 5108845 Pmen_0751 Pseudomonas mendocina ymp 16S rRNA m(2)G 1207 methyltransferase YP_001186251.1 846160 R 399739 CDS YP_001186252.1 146305787 5108846 847354..848130 1 NC_009439.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 848130 5108846 Pmen_0752 Pseudomonas mendocina ymp oxidoreductase FAD/NAD(P)-binding subunit YP_001186252.1 847354 D 399739 CDS YP_001186253.1 146305788 5108847 848242..848484 1 NC_009439.1 PFAM: protein of unknown function DUF465; hypothetical protein 848484 5108847 Pmen_0753 Pseudomonas mendocina ymp hypothetical protein YP_001186253.1 848242 D 399739 CDS YP_001186254.1 146305789 5108848 848563..848841 1 NC_009439.1 PFAM: protein of unknown function DUF465; hypothetical protein 848841 5108848 Pmen_0754 Pseudomonas mendocina ymp hypothetical protein YP_001186254.1 848563 D 399739 CDS YP_001186255.1 146305790 5108849 complement(848881..849375) 1 NC_009439.1 acetyltransferase-like protein 849375 5108849 Pmen_0755 Pseudomonas mendocina ymp acetyltransferase-like protein YP_001186255.1 848881 R 399739 CDS YP_001186256.1 146305791 5108850 849469..850830 1 NC_009439.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 850830 5108850 Pmen_0756 Pseudomonas mendocina ymp DNA repair protein RadA YP_001186256.1 849469 D 399739 CDS YP_001186257.1 146305792 5108851 complement(851173..851544) 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 851544 5108851 Pmen_0757 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001186257.1 851173 R 399739 CDS YP_001186258.1 146305793 5108852 851710..852216 1 NC_009439.1 hypothetical protein 852216 5108852 Pmen_0758 Pseudomonas mendocina ymp hypothetical protein YP_001186258.1 851710 D 399739 CDS YP_001186259.1 146305794 5108853 complement(852382..853635) 1 NC_009439.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 853635 glyA 5108853 glyA Pseudomonas mendocina ymp serine hydroxymethyltransferase YP_001186259.1 852382 R 399739 CDS YP_001186260.1 146305795 5108854 complement(853831..858045) 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 858045 5108854 Pmen_0760 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001186260.1 853831 R 399739 CDS YP_001186261.1 146305796 5108855 complement(858061..858303) 1 NC_009439.1 hypothetical protein 858303 5108855 Pmen_0761 Pseudomonas mendocina ymp hypothetical protein YP_001186261.1 858061 R 399739 CDS YP_001186262.1 146305797 5108856 858465..860132 1 NC_009439.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 860132 5108856 Pmen_0762 Pseudomonas mendocina ymp putative ABC transporter ATP-binding protein YP_001186262.1 858465 D 399739 CDS YP_001186263.1 146305798 5108857 complement(860229..860561) 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 860561 5108857 Pmen_0763 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001186263.1 860229 R 399739 CDS YP_001186264.1 146305799 5108858 complement(860571..862916) 1 NC_009439.1 PFAM: protein of unknown function DUF1631; hypothetical protein 862916 5108858 Pmen_0764 Pseudomonas mendocina ymp hypothetical protein YP_001186264.1 860571 R 399739 CDS YP_001186265.1 146305800 5106944 complement(863780..865081) 1 NC_009439.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 865081 5106944 Pmen_0765 Pseudomonas mendocina ymp FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001186265.1 863780 R 399739 CDS YP_001186266.1 146305801 5108860 complement(865145..865318) 1 NC_009439.1 hypothetical protein 865318 5108860 Pmen_0766 Pseudomonas mendocina ymp hypothetical protein YP_001186266.1 865145 R 399739 CDS YP_001186267.1 146305802 5108861 complement(865343..865891) 1 NC_009439.1 PFAM: MOSC domain containing protein; MOSC domain-containing protein 865891 5108861 Pmen_0767 Pseudomonas mendocina ymp MOSC domain-containing protein YP_001186267.1 865343 R 399739 CDS YP_001186268.1 146305803 5108862 complement(865888..866517) 1 NC_009439.1 hypothetical protein 866517 5108862 Pmen_0768 Pseudomonas mendocina ymp hypothetical protein YP_001186268.1 865888 R 399739 CDS YP_001186269.1 146305804 5108863 866644..867333 1 NC_009439.1 hypothetical protein 867333 5108863 Pmen_0769 Pseudomonas mendocina ymp hypothetical protein YP_001186269.1 866644 D 399739 CDS YP_001186270.1 146305805 5108864 867357..867656 1 NC_009439.1 hypothetical protein 867656 5108864 Pmen_0770 Pseudomonas mendocina ymp hypothetical protein YP_001186270.1 867357 D 399739 CDS YP_001186271.1 146305806 5108865 complement(867708..867902) 1 NC_009439.1 PFAM: protein of unknown function DUF329; zinc-binding protein 867902 5108865 Pmen_0771 Pseudomonas mendocina ymp zinc-binding protein YP_001186271.1 867708 R 399739 CDS YP_001186272.1 146305807 5108866 complement(867899..868507) 1 NC_009439.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 868507 coaE 5108866 coaE Pseudomonas mendocina ymp dephospho-CoA kinase YP_001186272.1 867899 R 399739 CDS YP_001186273.1 146305808 5108867 complement(868675..869544) 1 NC_009439.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; prepilin peptidase 869544 5108867 Pmen_0773 Pseudomonas mendocina ymp prepilin peptidase YP_001186273.1 868675 R 399739 CDS YP_001186274.1 146305809 5108868 complement(869545..870762) 1 NC_009439.1 PFAM: type II secretion system protein; type II secretion system protein 870762 5108868 Pmen_0774 Pseudomonas mendocina ymp type II secretion system protein YP_001186274.1 869545 R 399739 CDS YP_001186275.1 146305810 5108869 complement(870765..872468) 1 NC_009439.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; type IV-A pilus assembly ATPase PilB 872468 5108869 Pmen_0775 Pseudomonas mendocina ymp type IV-A pilus assembly ATPase PilB YP_001186275.1 870765 R 399739 CDS YP_001186276.1 146305811 5108870 complement(872735..874036) 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 874036 5108870 Pmen_0776 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001186276.1 872735 R 399739 CDS YP_001186277.1 146305812 5108871 874162..874557 1 NC_009439.1 PFAM: Fimbrial protein pilin; fimbrial protein pilin 874557 5108871 Pmen_0777 Pseudomonas mendocina ymp fimbrial protein pilin YP_001186277.1 874162 D 399739 CDS YP_001186278.1 146305813 5108872 complement(874786..875634) 1 NC_009439.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 875634 5108872 Pmen_0778 Pseudomonas mendocina ymp nicotinate-nucleotide pyrophosphorylase YP_001186278.1 874786 R 399739 CDS YP_001186279.1 146305814 5108873 876061..878361 1 NC_009439.1 PFAM: protein of unknown function DUF1631; hypothetical protein 878361 5108873 Pmen_0779 Pseudomonas mendocina ymp hypothetical protein YP_001186279.1 876061 D 399739 CDS YP_001186280.1 146305815 5108874 878735..879286 1 NC_009439.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetyl-anhydromuranmyl-L-alanine amidase 879286 5108874 Pmen_0780 Pseudomonas mendocina ymp N-acetyl-anhydromuranmyl-L-alanine amidase YP_001186280.1 878735 D 399739 CDS YP_001186281.1 146305816 5108875 879289..880122 1 NC_009439.1 signaling modulator of AmpD, AmpE 880122 5108875 Pmen_0781 Pseudomonas mendocina ymp signaling modulator of AmpD, AmpE YP_001186281.1 879289 D 399739 CDS YP_001186282.1 146305817 5108876 880464..882494 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 882494 5108876 Pmen_0782 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001186282.1 880464 D 399739 CDS YP_001186283.1 146305818 5108877 complement(882516..883295) 1 NC_009439.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 883295 5108877 Pmen_0783 Pseudomonas mendocina ymp TatD family hydrolase YP_001186283.1 882516 R 399739 CDS YP_001186284.1 146305819 5108878 883449..885491 1 NC_009439.1 PFAM: AsmA family protein; AsmA family protein 885491 5108878 Pmen_0784 Pseudomonas mendocina ymp AsmA family protein YP_001186284.1 883449 D 399739 CDS YP_001186285.1 146305820 5108879 complement(885568..886560) 1 NC_009439.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 886560 5108879 Pmen_0785 Pseudomonas mendocina ymp DNA-binding transcriptional regulator FruR YP_001186285.1 885568 R 399739 CDS YP_001186286.1 146305821 5108880 886785..889643 1 NC_009439.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate--protein phosphotransferase 889643 5108880 Pmen_0786 Pseudomonas mendocina ymp phosphoenolpyruvate--protein phosphotransferase YP_001186286.1 886785 D 399739 CDS YP_001186287.1 146305822 5108881 889643..890563 1 NC_009439.1 PFAM: PfkB domain protein; 1-phosphofructokinase 890563 5108881 Pmen_0787 Pseudomonas mendocina ymp 1-phosphofructokinase YP_001186287.1 889643 D 399739 CDS YP_001186288.1 146305823 5108882 890575..892299 1 NC_009439.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; PTS system fructose subfamily transporter subunit IIC 892299 5108882 Pmen_0788 Pseudomonas mendocina ymp PTS system fructose subfamily transporter subunit IIC YP_001186288.1 890575 D 399739 CDS YP_001186289.1 146305824 5108883 892417..894603 1 NC_009439.1 hypothetical protein 894603 5108883 Pmen_0789 Pseudomonas mendocina ymp hypothetical protein YP_001186289.1 892417 D 399739 CDS YP_001186290.1 146305825 5108884 complement(894837..895544) 1 NC_009439.1 PFAM: Silent information regulator protein Sir2; silent information regulator protein Sir2 895544 5108884 Pmen_0790 Pseudomonas mendocina ymp silent information regulator protein Sir2 YP_001186290.1 894837 R 399739 CDS YP_001186291.1 146305826 5108885 895712..898132 1 NC_009439.1 PFAM: Pyrrolo-quinoline quinone; quinoprotein glucose dehydrogenase 898132 5108885 Pmen_0791 Pseudomonas mendocina ymp quinoprotein glucose dehydrogenase YP_001186291.1 895712 D 399739 CDS YP_001186292.1 146305827 5108886 complement(898169..899752) 1 NC_009439.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 899752 prfC 5108886 prfC Pseudomonas mendocina ymp peptide chain release factor 3 YP_001186292.1 898169 R 399739 CDS YP_001186293.1 146305828 5108887 899989..902520 1 NC_009439.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 902520 5108887 Pmen_0793 Pseudomonas mendocina ymp flavodoxin/nitric oxide synthase YP_001186293.1 899989 D 399739 CDS YP_001186294.1 146305829 5108888 902611..903309 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 903309 5108888 Pmen_0794 Pseudomonas mendocina ymp two component transcriptional regulator YP_001186294.1 902611 D 399739 CDS YP_001186295.1 146305830 5108889 903306..904640 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 904640 5108889 Pmen_0795 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001186295.1 903306 D 399739 CDS YP_001186296.1 146305831 5108890 904729..906678 1 NC_009439.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 906678 5108890 Pmen_0796 Pseudomonas mendocina ymp TonB-dependent receptor YP_001186296.1 904729 D 399739 CDS YP_001186297.1 146305832 5108891 906678..907781 1 NC_009439.1 PFAM: periplasmic binding protein; periplasmic binding protein 907781 5108891 Pmen_0797 Pseudomonas mendocina ymp periplasmic binding protein YP_001186297.1 906678 D 399739 CDS YP_001186298.1 146305833 5108892 907793..908824 1 NC_009439.1 PFAM: transport system permease protein; transport system permease 908824 5108892 Pmen_0798 Pseudomonas mendocina ymp transport system permease YP_001186298.1 907793 D 399739 CDS YP_001186299.1 146305834 5108893 908821..909603 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 909603 5108893 Pmen_0799 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186299.1 908821 D 399739 CDS YP_001186300.1 146305835 5108894 909607..909885 1 NC_009439.1 hypothetical protein 909885 5108894 Pmen_0800 Pseudomonas mendocina ymp hypothetical protein YP_001186300.1 909607 D 399739 CDS YP_001186301.1 146305836 5108895 910266..911429 1 NC_009439.1 PFAM: Orn/DAP/Arg decarboxylase 2; ornithine decarboxylase 911429 5108895 Pmen_0801 Pseudomonas mendocina ymp ornithine decarboxylase YP_001186301.1 910266 D 399739 CDS YP_001186302.1 146305837 5108896 911717..914011 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 914011 5108896 Pmen_0802 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001186302.1 911717 D 399739 CDS YP_001186303.1 146305838 5108897 914148..914816 1 NC_009439.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; putative hydroxylase 914816 5108897 Pmen_0803 Pseudomonas mendocina ymp putative hydroxylase YP_001186303.1 914148 D 399739 CDS YP_001186304.1 146305839 5108898 914842..916011 1 NC_009439.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 916011 5108898 Pmen_0804 Pseudomonas mendocina ymp FMN-dependent alpha-hydroxy acid dehydrogenase YP_001186304.1 914842 D 399739 CDS YP_001186305.1 146305840 5108899 916254..918449 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 918449 5108899 Pmen_0805 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001186305.1 916254 D 399739 CDS YP_001186306.1 146305841 5108900 complement(918534..920765) 1 NC_009439.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 920765 5108900 Pmen_0806 Pseudomonas mendocina ymp TonB-dependent receptor YP_001186306.1 918534 R 399739 CDS YP_001186307.1 146305842 5108901 920995..921738 1 NC_009439.1 PFAM: LamB/YcsF family protein; hypothetical protein 921738 5108901 Pmen_0807 Pseudomonas mendocina ymp hypothetical protein YP_001186307.1 920995 D 399739 CDS YP_001186308.1 146305843 5108902 complement(921838..922137) 1 NC_009439.1 hypothetical protein 922137 5108902 Pmen_0808 Pseudomonas mendocina ymp hypothetical protein YP_001186308.1 921838 R 399739 CDS YP_001186309.1 146305844 5108903 complement(922213..922854) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; 3-beta hydroxysteroid dehydrogenase/isomerase 922854 5108903 Pmen_0809 Pseudomonas mendocina ymp 3-beta hydroxysteroid dehydrogenase/isomerase YP_001186309.1 922213 R 399739 CDS YP_001186310.1 146305845 5108904 922954..923841 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 923841 5108904 Pmen_0810 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186310.1 922954 D 399739 CDS YP_001186311.1 146305846 5108905 923928..924815 1 NC_009439.1 PFAM: protein of unknown function RIO1; hypothetical protein 924815 5108905 Pmen_0811 Pseudomonas mendocina ymp hypothetical protein YP_001186311.1 923928 D 399739 CDS YP_001186312.1 146305847 5108906 complement(924888..925319) 1 NC_009439.1 TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; MerR family transcriptional regulator 925319 5108906 Pmen_0812 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001186312.1 924888 R 399739 CDS YP_001186313.1 146305848 5108907 complement(925356..925616) 1 NC_009439.1 hypothetical protein 925616 5108907 Pmen_0813 Pseudomonas mendocina ymp hypothetical protein YP_001186313.1 925356 R 399739 CDS YP_001186314.1 146305849 5108908 complement(925713..926057) 1 NC_009439.1 hypothetical protein 926057 5108908 Pmen_0814 Pseudomonas mendocina ymp hypothetical protein YP_001186314.1 925713 R 399739 CDS YP_001186315.1 146305850 5108909 complement(926745..927086) 1 NC_009439.1 hypothetical protein 927086 5108909 Pmen_0815 Pseudomonas mendocina ymp hypothetical protein YP_001186315.1 926745 R 399739 CDS YP_001186316.1 146305851 5108910 complement(927359..929539) 1 NC_009439.1 PFAM: lipase, class 3; lipase, class 3 929539 5108910 Pmen_0816 Pseudomonas mendocina ymp lipase, class 3 YP_001186316.1 927359 R 399739 CDS YP_001186317.1 146305852 5108911 complement(929546..930211) 1 NC_009439.1 hypothetical protein 930211 5108911 Pmen_0817 Pseudomonas mendocina ymp hypothetical protein YP_001186317.1 929546 R 399739 CDS YP_001186318.1 146305853 5108912 complement(930286..931029) 1 NC_009439.1 hypothetical protein 931029 5108912 Pmen_0818 Pseudomonas mendocina ymp hypothetical protein YP_001186318.1 930286 R 399739 CDS YP_001186319.1 146305854 5108913 complement(931026..931928) 1 NC_009439.1 hypothetical protein 931928 5108913 Pmen_0819 Pseudomonas mendocina ymp hypothetical protein YP_001186319.1 931026 R 399739 CDS YP_001186320.1 146305855 5108914 complement(931925..934009) 1 NC_009439.1 PFAM: Rhs element Vgr protein; Rhs element Vgr protein 934009 5108914 Pmen_0820 Pseudomonas mendocina ymp Rhs element Vgr protein YP_001186320.1 931925 R 399739 CDS YP_001186321.1 146305856 5108915 complement(934143..936515) 1 NC_009439.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 936515 5108915 Pmen_0821 Pseudomonas mendocina ymp heavy metal translocating P-type ATPase YP_001186321.1 934143 R 399739 CDS YP_001186322.1 146305857 5108916 complement(936580..936969) 1 NC_009439.1 hypothetical protein 936969 5108916 Pmen_0822 Pseudomonas mendocina ymp hypothetical protein YP_001186322.1 936580 R 399739 CDS YP_001186323.1 146305858 5108917 937054..937305 1 NC_009439.1 PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 937305 5108917 Pmen_0823 Pseudomonas mendocina ymp heavy metal transport/detoxification protein YP_001186323.1 937054 D 399739 CDS YP_001186324.1 146305859 5108918 complement(937355..937975) 1 NC_009439.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; TetR family transcriptional regulator 937975 5108918 Pmen_0824 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001186324.1 937355 R 399739 CDS YP_001186325.1 146305860 5108919 938114..939265 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 939265 5108919 Pmen_0825 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001186325.1 938114 D 399739 CDS YP_001186326.1 146305861 5108920 939271..942408 1 NC_009439.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 942408 5108920 Pmen_0826 Pseudomonas mendocina ymp hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001186326.1 939271 D 399739 CDS YP_001186327.1 146305862 5108921 942501..943670 1 NC_009439.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 943670 5108921 Pmen_0827 Pseudomonas mendocina ymp Bcr/CflA subfamily drug resistance transporter YP_001186327.1 942501 D 399739 CDS YP_001186328.1 146305863 5108922 complement(943680..944540) 1 NC_009439.1 PFAM: protein of unknown function, zinc metallopeptidase putative; hypothetical protein 944540 5108922 Pmen_0828 Pseudomonas mendocina ymp hypothetical protein YP_001186328.1 943680 R 399739 CDS YP_001186329.1 146305864 5108923 complement(944580..945014) 1 NC_009439.1 PFAM: protein of unknown function DUF411; hypothetical protein 945014 5108923 Pmen_0829 Pseudomonas mendocina ymp hypothetical protein YP_001186329.1 944580 R 399739 CDS YP_001186330.1 146305865 5108924 945144..945527 1 NC_009439.1 hypothetical protein 945527 5108924 Pmen_0830 Pseudomonas mendocina ymp hypothetical protein YP_001186330.1 945144 D 399739 CDS YP_001186331.1 146305866 5108925 complement(945566..946654) 1 NC_009439.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 946654 5108925 Pmen_0831 Pseudomonas mendocina ymp tRNA (uracil-5-)-methyltransferase YP_001186331.1 945566 R 399739 CDS YP_001186332.1 146305867 5108926 complement(946713..948005) 1 NC_009439.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; xanthine/uracil/vitamin C permease 948005 5108926 Pmen_0832 Pseudomonas mendocina ymp xanthine/uracil/vitamin C permease YP_001186332.1 946713 R 399739 CDS YP_001186333.1 146305868 5108927 948241..948792 1 NC_009439.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; DJ-1 family protein 948792 5108927 Pmen_0833 Pseudomonas mendocina ymp DJ-1 family protein YP_001186333.1 948241 D 399739 CDS YP_001186334.1 146305869 5108928 complement(948979..950001) 1 NC_009439.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein, AraC type; methylated-DNA-[protein]-cysteine S-methyltransferase; Ada, metal-binding domain protein; methylguanine DNA methyltransferase, ribonuclease domain protein; DNA-O6-methylguanine--protein-cysteine S-methyltransferase/transcriptional regulator Ada 950001 5108928 Pmen_0834 Pseudomonas mendocina ymp DNA-O6-methylguanine--protein-cysteine S-methyltransferase/transcriptional regulator Ada YP_001186334.1 948979 R 399739 CDS YP_001186335.1 146305870 5108929 950161..953658 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein, family 3; response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 953658 5108929 Pmen_0835 Pseudomonas mendocina ymp multi-sensor hybrid histidine kinase YP_001186335.1 950161 D 399739 CDS YP_001186336.1 146305871 5108930 953693..954880 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 954880 5108930 Pmen_0836 Pseudomonas mendocina ymp response regulator receiver protein YP_001186336.1 953693 D 399739 CDS YP_001186337.1 146305872 5108931 complement(955001..955972) 1 NC_009439.1 Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; dipeptide transporter ATP-binding subunit 955972 dppF 5108931 dppF Pseudomonas mendocina ymp dipeptide transporter ATP-binding subunit YP_001186337.1 955001 R 399739 CDS YP_001186338.1 146305873 5108932 complement(955972..956946) 1 NC_009439.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 956946 5108932 Pmen_0838 Pseudomonas mendocina ymp oligopeptide/dipeptide ABC transporter ATPase YP_001186338.1 955972 R 399739 CDS YP_001186339.1 146305874 5108933 complement(957049..957951) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 957951 5108933 Pmen_0839 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001186339.1 957049 R 399739 CDS YP_001186340.1 146305875 5108934 complement(958051..959061) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; alkaline phosphatase 959061 5108934 Pmen_0840 Pseudomonas mendocina ymp alkaline phosphatase YP_001186340.1 958051 R 399739 CDS YP_001186341.1 146305876 5108935 complement(959223..960818) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 960818 5108935 Pmen_0841 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186341.1 959223 R 399739 CDS YP_001186342.1 146305877 5108936 complement(960993..961559) 1 NC_009439.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; cupin 961559 5108936 Pmen_0842 Pseudomonas mendocina ymp cupin YP_001186342.1 960993 R 399739 CDS YP_001186343.1 146305878 5108937 961744..962973 1 NC_009439.1 PFAM: creatinase; peptidase M24; peptidase M24 962973 5108937 Pmen_0843 Pseudomonas mendocina ymp peptidase M24 YP_001186343.1 961744 D 399739 CDS YP_001186344.1 146305879 5108938 complement(963018..964613) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 964613 5108938 Pmen_0844 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186344.1 963018 R 399739 CDS YP_001186345.1 146305880 5108939 complement(964667..966265) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 966265 5108939 Pmen_0845 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186345.1 964667 R 399739 CDS YP_001186346.1 146305881 5108940 complement(966491..967204) 1 NC_009439.1 PFAM: protein of unknown function DUF541; hypothetical protein 967204 5108940 Pmen_0846 Pseudomonas mendocina ymp hypothetical protein YP_001186346.1 966491 R 399739 CDS YP_001186347.1 146305882 5108941 967404..968657 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 968657 5108941 Pmen_0847 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001186347.1 967404 D 399739 CDS YP_001186348.1 146305883 5108942 968673..969233 1 NC_009439.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; two component Fis family transcriptional regulator 969233 5108942 Pmen_0848 Pseudomonas mendocina ymp two component Fis family transcriptional regulator YP_001186348.1 968673 D 399739 CDS YP_001186349.1 146305884 5108943 969399..970340 1 NC_009439.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 970340 5108943 Pmen_0849 Pseudomonas mendocina ymp auxin efflux carrier YP_001186349.1 969399 D 399739 CDS YP_001186350.1 146305885 5108944 complement(970414..970797) 1 NC_009439.1 PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 970797 5108944 Pmen_0850 Pseudomonas mendocina ymp 4-carboxymuconolactone decarboxylase YP_001186350.1 970414 R 399739 CDS YP_001186351.1 146305886 5108945 complement(970800..971894) 1 NC_009439.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; CaCA family Na(+)/Ca(+) antiporter 971894 5108945 Pmen_0851 Pseudomonas mendocina ymp CaCA family Na(+)/Ca(+) antiporter YP_001186351.1 970800 R 399739 CDS YP_001186352.1 146305887 5108946 complement(971986..972408) 1 NC_009439.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; rare lipoprotein A 972408 5108946 Pmen_0852 Pseudomonas mendocina ymp rare lipoprotein A YP_001186352.1 971986 R 399739 CDS YP_001186353.1 146305888 5108947 complement(972478..973923) 1 NC_009439.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 973923 gatB 5108947 gatB Pseudomonas mendocina ymp aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001186353.1 972478 R 399739 CDS YP_001186354.1 146305889 5108948 complement(973935..975386) 1 NC_009439.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 975386 gatA 5108948 gatA Pseudomonas mendocina ymp aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001186354.1 973935 R 399739 CDS YP_001186355.1 146305890 5108949 complement(975402..975689) 1 NC_009439.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 975689 gatC 5108949 gatC Pseudomonas mendocina ymp aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001186355.1 975402 R 399739 CDS YP_001186356.1 146305891 5108950 975927..976964 1 NC_009439.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 976964 5108950 Pmen_0856 Pseudomonas mendocina ymp rod shape-determining protein MreB YP_001186356.1 975927 D 399739 CDS YP_001186357.1 146305892 5108951 977097..978083 1 NC_009439.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 978083 5108951 Pmen_0857 Pseudomonas mendocina ymp rod shape-determining protein MreC YP_001186357.1 977097 D 399739 CDS YP_001186358.1 146305893 5108952 978083..978571 1 NC_009439.1 PFAM: Rod shape-determining protein MreD; rod shape-determining protein MreD 978571 5108952 Pmen_0858 Pseudomonas mendocina ymp rod shape-determining protein MreD YP_001186358.1 978083 D 399739 CDS YP_001186359.1 146305894 5108953 978621..979217 1 NC_009439.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 979217 5108953 Pmen_0859 Pseudomonas mendocina ymp Maf-like protein YP_001186359.1 978621 D 399739 CDS YP_001186360.1 146305895 5108954 979318..980775 1 NC_009439.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; RNAse G 980775 5108954 Pmen_0860 Pseudomonas mendocina ymp RNAse G YP_001186360.1 979318 D 399739 CDS YP_001186361.1 146305896 5108955 980793..984614 1 NC_009439.1 hypothetical protein 984614 5108955 Pmen_0861 Pseudomonas mendocina ymp hypothetical protein YP_001186361.1 980793 D 399739 CDS YP_001186362.1 146305897 5108956 984652..985512 1 NC_009439.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 985512 5108956 Pmen_0862 Pseudomonas mendocina ymp nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001186362.1 984652 D 399739 CDS YP_001186363.1 146305898 5108957 985515..986957 1 NC_009439.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 986957 5108957 Pmen_0863 Pseudomonas mendocina ymp C69 family peptidase YP_001186363.1 985515 D 399739 CDS YP_001186364.1 146305899 5108958 complement(987031..987549) 1 NC_009439.1 PFAM: protein of unknown function DUF615; hypothetical protein 987549 5108958 Pmen_0864 Pseudomonas mendocina ymp hypothetical protein YP_001186364.1 987031 R 399739 CDS YP_001186365.1 146305900 5108959 987666..989012 1 NC_009439.1 PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase 989012 5108959 Pmen_0865 Pseudomonas mendocina ymp C69 family peptidase YP_001186365.1 987666 D 399739 CDS YP_001186366.1 146305901 5108960 complement(989067..989339) 1 NC_009439.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr 989339 5108960 Pmen_0866 Pseudomonas mendocina ymp phosphotransferase system, phosphocarrier protein HPr YP_001186366.1 989067 R 399739 CDS YP_001186367.1 146305902 5108961 complement(989354..990211) 1 NC_009439.1 PFAM: uncharacterised P-loop ATPase protein UPF0042; hypothetical protein 990211 5108961 Pmen_0867 Pseudomonas mendocina ymp hypothetical protein YP_001186367.1 989354 R 399739 CDS YP_001186368.1 146305903 5108962 complement(990214..990678) 1 NC_009439.1 TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN 990678 5108962 Pmen_0868 Pseudomonas mendocina ymp PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN YP_001186368.1 990214 R 399739 CDS YP_001186369.1 146305904 5108963 complement(990691..990999) 1 NC_009439.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; 30S ribosomal protein S30 990999 5108963 Pmen_0869 Pseudomonas mendocina ymp 30S ribosomal protein S30 YP_001186369.1 990691 R 399739 CDS YP_001186370.1 146305905 5108964 complement(991098..992591) 1 NC_009439.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 992591 5108964 Pmen_0870 Pseudomonas mendocina ymp RNA polymerase factor sigma-54 YP_001186370.1 991098 R 399739 CDS YP_001186371.1 146305906 5108965 complement(992728..993453) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 993453 5108965 Pmen_0871 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186371.1 992728 R 399739 CDS YP_001186372.1 146305907 5108966 complement(993453..993998) 1 NC_009439.1 PFAM: OstA family protein; OstA family protein 993998 5108966 Pmen_0872 Pseudomonas mendocina ymp OstA family protein YP_001186372.1 993453 R 399739 CDS YP_001186373.1 146305908 5108967 complement(993985..994551) 1 NC_009439.1 PFAM: protein of unknown function DUF1239; hypothetical protein 994551 5108967 Pmen_0873 Pseudomonas mendocina ymp hypothetical protein YP_001186373.1 993985 R 399739 CDS YP_001186374.1 146305909 5108968 complement(994560..995081) 1 NC_009439.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 995081 5108968 Pmen_0874 Pseudomonas mendocina ymp 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_001186374.1 994560 R 399739 CDS YP_001186375.1 146305910 5108969 complement(995081..996055) 1 NC_009439.1 TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 996055 5108969 Pmen_0875 Pseudomonas mendocina ymp KpsF/GutQ family protein YP_001186375.1 995081 R 399739 CDS YP_001186376.1 146305911 5108970 996301..997110 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 997110 5108970 Pmen_0876 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186376.1 996301 D 399739 CDS YP_001186377.1 146305912 5108971 997110..997907 1 NC_009439.1 PFAM: protein of unknown function DUF140; hypothetical protein 997907 5108971 Pmen_0877 Pseudomonas mendocina ymp hypothetical protein YP_001186377.1 997110 D 399739 CDS YP_001186378.1 146305913 5108972 997907..998377 1 NC_009439.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 998377 5108972 Pmen_0878 Pseudomonas mendocina ymp hypothetical protein YP_001186378.1 997907 D 399739 CDS YP_001186379.1 146305914 5108973 998392..999021 1 NC_009439.1 PFAM: toluene tolerance family protein; toluene tolerance family protein 999021 5108973 Pmen_0879 Pseudomonas mendocina ymp toluene tolerance family protein YP_001186379.1 998392 D 399739 CDS YP_001186380.1 146305915 5108974 999018..999323 1 NC_009439.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 999323 5108974 Pmen_0880 Pseudomonas mendocina ymp anti-sigma-factor antagonist YP_001186380.1 999018 D 399739 CDS YP_001186381.1 146305916 5108975 999448..999687 1 NC_009439.1 PFAM: BolA family protein; BolA family protein 999687 5108975 Pmen_0881 Pseudomonas mendocina ymp BolA family protein YP_001186381.1 999448 D 399739 CDS YP_001186382.1 146305917 5108976 999710..1000975 1 NC_009439.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1000975 5108976 Pmen_0882 Pseudomonas mendocina ymp UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001186382.1 999710 D 399739 CDS YP_001186383.1 146305918 5108977 1001039..1001674 1 NC_009439.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 1001674 hisG 5108977 hisG Pseudomonas mendocina ymp ATP phosphoribosyltransferase catalytic subunit YP_001186383.1 1001039 D 399739 CDS YP_001186384.1 146305919 5108978 1001798..1003108 1 NC_009439.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 1003108 hisD 5108978 hisD Pseudomonas mendocina ymp histidinol dehydrogenase YP_001186384.1 1001798 D 399739 CDS YP_001186385.1 146305920 5108743 1003239..1004291 1 NC_009439.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1004291 5108743 Pmen_0885 Pseudomonas mendocina ymp histidinol-phosphate aminotransferase YP_001186385.1 1003239 D 399739 CDS YP_001186386.1 146305921 5108744 complement(1004361..1005080) 1 NC_009439.1 hypothetical protein 1005080 5108744 Pmen_0886 Pseudomonas mendocina ymp hypothetical protein YP_001186386.1 1004361 R 399739 CDS YP_001186387.1 146305922 5108745 complement(1005094..1007172) 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 1007172 5108745 Pmen_0887 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001186387.1 1005094 R 399739 CDS YP_001186388.1 146305923 5108746 complement(1007259..1008401) 1 NC_009439.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; 2-alkenal reductase 1008401 5108746 Pmen_0888 Pseudomonas mendocina ymp 2-alkenal reductase YP_001186388.1 1007259 R 399739 CDS YP_001186389.1 146305924 5108747 1008513..1009271 1 NC_009439.1 PFAM: protein of unknown function DUF34; hypothetical protein 1009271 5108747 Pmen_0889 Pseudomonas mendocina ymp hypothetical protein YP_001186389.1 1008513 D 399739 CDS YP_001186390.1 146305925 5108748 1009404..1010321 1 NC_009439.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1010321 5108748 Pmen_0890 Pseudomonas mendocina ymp sulfate adenylyltransferase subunit 2 YP_001186390.1 1009404 D 399739 CDS YP_001186391.1 146305926 5108749 1010334..1012229 1 NC_009439.1 in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from EScherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 1012229 5108749 Pmen_0891 Pseudomonas mendocina ymp bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase YP_001186391.1 1010334 D 399739 CDS YP_001186392.1 146305927 5108750 complement(1012360..1012791) 1 NC_009439.1 PFAM: protein of unknown function DUF1043; hypothetical protein 1012791 5108750 Pmen_0892 Pseudomonas mendocina ymp hypothetical protein YP_001186392.1 1012360 R 399739 CDS YP_001186393.1 146305928 5108751 1012920..1013552 1 NC_009439.1 alpha/beta fold family hydrolase-like protein 1013552 5108751 Pmen_0893 Pseudomonas mendocina ymp alpha/beta fold family hydrolase-like protein YP_001186393.1 1012920 D 399739 CDS YP_001186394.1 146305929 5108752 1013687..1015033 1 NC_009439.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1015033 5108752 Pmen_0894 Pseudomonas mendocina ymp tryptophanyl-tRNA synthetase YP_001186394.1 1013687 D 399739 CDS YP_001186395.1 146305930 5108753 1015132..1016226 1 NC_009439.1 PFAM: AFG1-family ATPase; AFG1 family ATPase 1016226 5108753 Pmen_0895 Pseudomonas mendocina ymp AFG1 family ATPase YP_001186395.1 1015132 D 399739 CDS YP_001186396.1 146305931 5108754 complement(1016386..1017348) 1 NC_009439.1 hypothetical protein 1017348 5108754 Pmen_0896 Pseudomonas mendocina ymp hypothetical protein YP_001186396.1 1016386 R 399739 CDS YP_001186397.1 146305932 5108755 complement(1017477..1018484) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; transcriptional regulator 1018484 5108755 Pmen_0897 Pseudomonas mendocina ymp transcriptional regulator YP_001186397.1 1017477 R 399739 CDS YP_001186398.1 146305933 5108756 1018627..1019766 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1019766 5108756 Pmen_0898 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001186398.1 1018627 D 399739 CDS YP_001186399.1 146305934 5108757 1019838..1020551 1 NC_009439.1 PFAM: Endonuclease V; endonuclease V 1020551 5108757 Pmen_0899 Pseudomonas mendocina ymp endonuclease V YP_001186399.1 1019838 D 399739 CDS YP_001186400.1 146305935 5108758 complement(1020548..1021585) 1 NC_009439.1 PFAM: aldo/keto reductase; aldo/keto reductase 1021585 5108758 Pmen_0900 Pseudomonas mendocina ymp aldo/keto reductase YP_001186400.1 1020548 R 399739 CDS YP_001186401.1 146305936 5108759 1021834..1022262 1 NC_009439.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 1022262 rplM 5108759 rplM Pseudomonas mendocina ymp 50S ribosomal protein L13 YP_001186401.1 1021834 D 399739 CDS YP_001186402.1 146305937 5108760 1022277..1022669 1 NC_009439.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 1022669 rpsI 5108760 rpsI Pseudomonas mendocina ymp 30S ribosomal protein S9 YP_001186402.1 1022277 D 399739 CDS YP_001186403.1 146305938 5108761 1022923..1023516 1 NC_009439.1 TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1023516 5108761 Pmen_0903 Pseudomonas mendocina ymp ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_001186403.1 1022923 D 399739 CDS YP_001186404.1 146305939 5108762 1023516..1024727 1 NC_009439.1 PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; cytochrome b/b6 domain-containing protein 1024727 5108762 Pmen_0904 Pseudomonas mendocina ymp cytochrome b/b6 domain-containing protein YP_001186404.1 1023516 D 399739 CDS YP_001186405.1 146305940 5108763 1024727..1025506 1 NC_009439.1 cytochrome c1-like protein 1025506 5108763 Pmen_0905 Pseudomonas mendocina ymp cytochrome c1-like protein YP_001186405.1 1024727 D 399739 CDS YP_001186406.1 146305941 5108764 1025671..1026288 1 NC_009439.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 1026288 5108764 Pmen_0906 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001186406.1 1025671 D 399739 CDS YP_001186407.1 146305942 5108765 1026303..1026716 1 NC_009439.1 PFAM: Stringent starvation protein B; ClpXP protease specificity-enhancing factor 1026716 5108765 Pmen_0907 Pseudomonas mendocina ymp ClpXP protease specificity-enhancing factor YP_001186407.1 1026303 D 399739 CDS YP_001186408.1 146305943 5108766 complement(1026797..1027330) 1 NC_009439.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated 1027330 5108766 Pmen_0908 Pseudomonas mendocina ymp transport-associated YP_001186408.1 1026797 R 399739 CDS YP_001186409.1 146305944 5108767 complement(1027327..1027920) 1 NC_009439.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1027920 gmhA 5108767 gmhA Pseudomonas mendocina ymp phosphoheptose isomerase YP_001186409.1 1027327 R 399739 CDS YP_001186410.1 146305945 5108768 complement(1027946..1028305) 1 NC_009439.1 PFAM: protein of unknown function UPF0102; hypothetical protein 1028305 5108768 Pmen_0910 Pseudomonas mendocina ymp hypothetical protein YP_001186410.1 1027946 R 399739 CDS YP_001186411.1 146305946 5108769 complement(1028302..1030110) 1 NC_009439.1 PFAM: LppC family lipoprotein; LppC family lipoprotein 1030110 5108769 Pmen_0911 Pseudomonas mendocina ymp LppC family lipoprotein YP_001186411.1 1028302 R 399739 CDS YP_001186412.1 146305947 5108770 1030200..1031099 1 NC_009439.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 1031099 5108770 Pmen_0912 Pseudomonas mendocina ymp uroporphyrin-III C/tetrapyrrole methyltransferase YP_001186412.1 1030200 D 399739 CDS YP_001186413.1 146305948 5106945 1031884..1032339 1 NC_009439.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1032339 5106945 Pmen_0913 Pseudomonas mendocina ymp cell division protein MraZ YP_001186413.1 1031884 D 399739 CDS YP_001186414.1 146305949 5108772 1032342..1033286 1 NC_009439.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 1033286 mraW 5108772 mraW Pseudomonas mendocina ymp S-adenosyl-methyltransferase MraW YP_001186414.1 1032342 D 399739 CDS YP_001186415.1 146305950 5108773 1033283..1033576 1 NC_009439.1 PFAM: cell division protein FtsL; cell division protein FtsL 1033576 5108773 Pmen_0915 Pseudomonas mendocina ymp cell division protein FtsL YP_001186415.1 1033283 D 399739 CDS YP_001186416.1 146305951 5108774 1033573..1035300 1 NC_009439.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan synthetase FtsI 1035300 5108774 Pmen_0916 Pseudomonas mendocina ymp peptidoglycan synthetase FtsI YP_001186416.1 1033573 D 399739 CDS YP_001186417.1 146305952 5108775 1035300..1036763 1 NC_009439.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1036763 murE 5108775 murE Pseudomonas mendocina ymp UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001186417.1 1035300 D 399739 CDS YP_001186418.1 146305953 5108776 1036756..1038126 1 NC_009439.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 1038126 5108776 Pmen_0918 Pseudomonas mendocina ymp UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_001186418.1 1036756 D 399739 CDS YP_001186419.1 146305954 5108777 1038127..1039209 1 NC_009439.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1039209 mraY 5108777 mraY Pseudomonas mendocina ymp phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001186419.1 1038127 D 399739 CDS YP_001186420.1 146305955 5108778 1039216..1040562 1 NC_009439.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1040562 murD 5108778 murD Pseudomonas mendocina ymp UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001186420.1 1039216 D 399739 CDS YP_001186421.1 146305956 5108779 1040562..1041770 1 NC_009439.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; cell division protein FtsW 1041770 5108779 Pmen_0921 Pseudomonas mendocina ymp cell division protein FtsW YP_001186421.1 1040562 D 399739 CDS YP_001186422.1 146305957 5108780 1041760..1042830 1 NC_009439.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1042830 murG 5108780 murG Pseudomonas mendocina ymp undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001186422.1 1041760 D 399739 CDS YP_001186423.1 146305958 5108781 1042823..1044265 1 NC_009439.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 1044265 murC 5108781 murC Pseudomonas mendocina ymp UDP-N-acetylmuramate--L-alanine ligase YP_001186423.1 1042823 D 399739 CDS YP_001186424.1 146305959 5108782 1044262..1045203 1 NC_009439.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 1045203 ddl 5108782 ddl Pseudomonas mendocina ymp D-alanine--D-alanine ligase YP_001186424.1 1044262 D 399739 CDS YP_001186425.1 146305960 5108783 1045207..1046073 1 NC_009439.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 1046073 5108783 Pmen_0925 Pseudomonas mendocina ymp polypeptide-transport-associated domain-containing protein YP_001186425.1 1045207 D 399739 CDS YP_001186426.1 146305961 5108784 1046089..1047336 1 NC_009439.1 PFAM: cell division protein FtsA; cell division protein FtsA 1047336 5108784 Pmen_0926 Pseudomonas mendocina ymp cell division protein FtsA YP_001186426.1 1046089 D 399739 CDS YP_001186427.1 146305962 5108785 1047379..1048572 1 NC_009439.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1048572 5108785 Pmen_0927 Pseudomonas mendocina ymp cell division protein FtsZ YP_001186427.1 1047379 D 399739 CDS YP_001186428.1 146305963 5108786 1048684..1049595 1 NC_009439.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1049595 lpxC 5108786 lpxC Pseudomonas mendocina ymp UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_001186428.1 1048684 D 399739 CDS YP_001186429.1 146305964 5108787 complement(1049730..1050185) 1 NC_009439.1 hypothetical protein 1050185 5108787 Pmen_0929 Pseudomonas mendocina ymp hypothetical protein YP_001186429.1 1049730 R 399739 CDS YP_001186430.1 146305965 5108788 1050264..1051184 1 NC_009439.1 PFAM: peptidase M23B; peptidase M23B 1051184 5108788 Pmen_0930 Pseudomonas mendocina ymp peptidase M23B YP_001186430.1 1050264 D 399739 CDS YP_001186431.1 146305966 5108789 1051339..1054158 1 NC_009439.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA 1054158 secA 5108789 secA Pseudomonas mendocina ymp preprotein translocase subunit SecA YP_001186431.1 1051339 D 399739 CDS YP_001186432.1 146305967 5108790 1054310..1055527 1 NC_009439.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1055527 argJ 5108790 argJ Pseudomonas mendocina ymp bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001186432.1 1054310 D 399739 CDS YP_001186433.1 146305968 5108791 1055658..1056290 1 NC_009439.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 1056290 5108791 Pmen_0933 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001186433.1 1055658 D 399739 CDS YP_001186434.1 146305969 5108792 1056287..1057228 1 NC_009439.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; hypothetical protein 1057228 5108792 Pmen_0934 Pseudomonas mendocina ymp hypothetical protein YP_001186434.1 1056287 D 399739 CDS YP_001186435.1 146305970 5108793 complement(1057288..1057863) 1 NC_009439.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP:cob(I)alamin adenosyltransferase 1057863 5108793 Pmen_0935 Pseudomonas mendocina ymp ATP:cob(I)alamin adenosyltransferase YP_001186435.1 1057288 R 399739 CDS YP_001186436.1 146305971 5108794 complement(1057867..1059882) 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1059882 5108794 Pmen_0936 Pseudomonas mendocina ymp multi-sensor signal transduction histidine kinase YP_001186436.1 1057867 R 399739 CDS YP_001186437.1 146305972 5108795 complement(1059989..1060900) 1 NC_009439.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 1060900 5108795 Pmen_0937 Pseudomonas mendocina ymp 2-dehydropantoate 2-reductase YP_001186437.1 1059989 R 399739 CDS YP_001186438.1 146305973 5108796 complement(1060897..1061859) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 1061859 5108796 Pmen_0938 Pseudomonas mendocina ymp response regulator receiver modulated diguanylate cyclase YP_001186438.1 1060897 R 399739 CDS YP_001186439.1 146305974 5108797 1061998..1062477 1 NC_009439.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1062477 5108797 Pmen_0939 Pseudomonas mendocina ymp putative nucleotide-binding protein YP_001186439.1 1061998 D 399739 CDS YP_001186440.1 146305975 5108798 1062581..1063408 1 NC_009439.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1063408 5108798 Pmen_0940 Pseudomonas mendocina ymp mechanosensitive ion channel protein MscS YP_001186440.1 1062581 D 399739 CDS YP_001186441.1 146305976 5108799 complement(1063463..1065259) 1 NC_009439.1 hypothetical protein 1065259 5108799 Pmen_0941 Pseudomonas mendocina ymp hypothetical protein YP_001186441.1 1063463 R 399739 CDS YP_001186442.1 146305977 5108800 complement(1065303..1065677) 1 NC_009439.1 PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1065677 5108800 Pmen_0942 Pseudomonas mendocina ymp methylated-DNA--protein-cysteine methyltransferase YP_001186442.1 1065303 R 399739 CDS YP_001186443.1 146305978 5108801 1065694..1066686 1 NC_009439.1 hypothetical protein 1066686 5108801 Pmen_0943 Pseudomonas mendocina ymp hypothetical protein YP_001186443.1 1065694 D 399739 CDS YP_001186444.1 146305979 5108802 1066837..1067850 1 NC_009439.1 hypothetical protein 1067850 5108802 Pmen_0944 Pseudomonas mendocina ymp hypothetical protein YP_001186444.1 1066837 D 399739 CDS YP_001186445.1 146305980 5108803 complement(1067918..1069180) 1 NC_009439.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 1069180 5108803 Pmen_0945 Pseudomonas mendocina ymp uracil-xanthine permease YP_001186445.1 1067918 R 399739 CDS YP_001186446.1 146305981 5108804 complement(1069183..1069821) 1 NC_009439.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1069821 upp 5108804 upp Pseudomonas mendocina ymp uracil phosphoribosyltransferase YP_001186446.1 1069183 R 399739 CDS YP_001186447.1 146305982 5108805 1070056..1070613 1 NC_009439.1 Catalyzes the salvage synthesis of inosine-5'-monophosphate (IMP) and guanosine-5'-monophosphate (GMP) from the purine bases hypoxanthine and guanine, respectively; hypoxanthine-guanine phosphoribosyltransferase 1070613 5108805 Pmen_0947 Pseudomonas mendocina ymp hypoxanthine-guanine phosphoribosyltransferase YP_001186447.1 1070056 D 399739 CDS YP_001186448.1 146305983 5108806 complement(1070686..1072425) 1 NC_009439.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 1072425 5108806 Pmen_0948 Pseudomonas mendocina ymp putative sulfate transporter YchM YP_001186448.1 1070686 R 399739 CDS YP_001186449.1 146305984 5108807 1072598..1072885 1 NC_009439.1 hypothetical protein 1072885 5108807 Pmen_0949 Pseudomonas mendocina ymp hypothetical protein YP_001186449.1 1072598 D 399739 CDS YP_001186450.1 146305985 5108808 complement(1073014..1073292) 1 NC_009439.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1073292 rpsT 5108808 rpsT Pseudomonas mendocina ymp 30S ribosomal protein S20 YP_001186450.1 1073014 R 399739 CDS YP_001186451.1 146305986 5108809 1073484..1075025 1 NC_009439.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN 1075025 5108809 Pmen_0951 Pseudomonas mendocina ymp integral membrane protein MviN YP_001186451.1 1073484 D 399739 CDS YP_001186452.1 146305987 5108810 1075170..1076120 1 NC_009439.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1076120 5108810 Pmen_0952 Pseudomonas mendocina ymp bifunctional riboflavin kinase/FMN adenylyltransferase YP_001186452.1 1075170 D 399739 CDS YP_001186453.1 146305988 5108811 1076117..1078948 1 NC_009439.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1078948 ileS 5108811 ileS Pseudomonas mendocina ymp isoleucyl-tRNA synthetase YP_001186453.1 1076117 D 399739 CDS YP_001186454.1 146305989 5108812 1078941..1079450 1 NC_009439.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1079450 lspA 5108812 lspA Pseudomonas mendocina ymp lipoprotein signal peptidase YP_001186454.1 1078941 D 399739 CDS YP_001186455.1 146305990 5108813 1079447..1079884 1 NC_009439.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1079884 5108813 Pmen_0955 Pseudomonas mendocina ymp FKBP-type peptidylprolyl isomerase YP_001186455.1 1079447 D 399739 CDS YP_001186456.1 146305991 5108814 1080023..1080967 1 NC_009439.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1080967 ispH 5108814 ispH Pseudomonas mendocina ymp 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001186456.1 1080023 D 399739 CDS YP_001186457.1 146305992 5108815 complement(1081090..1081515) 1 NC_009439.1 Tfp pilus assembly protein PilE-like protein 1081515 5108815 Pmen_0957 Pseudomonas mendocina ymp Tfp pilus assembly protein PilE-like protein YP_001186457.1 1081090 R 399739 CDS YP_001186458.1 146305993 5108816 complement(1081518..1085201) 1 NC_009439.1 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein 1085201 5108816 Pmen_0958 Pseudomonas mendocina ymp Tfp pilus assembly protein tip-associated adhesin PilY1-like protein YP_001186458.1 1081518 R 399739 CDS YP_001186459.1 146305994 5108817 complement(1085213..1085860) 1 NC_009439.1 Tfp pilus assembly protein PilX-like protein 1085860 5108817 Pmen_0959 Pseudomonas mendocina ymp Tfp pilus assembly protein PilX-like protein YP_001186459.1 1085213 R 399739 CDS YP_001186460.1 146305995 5108818 complement(1085857..1086705) 1 NC_009439.1 Tfp pilus assembly protein PilW-like protein 1086705 5108818 Pmen_0960 Pseudomonas mendocina ymp Tfp pilus assembly protein PilW-like protein YP_001186460.1 1085857 R 399739 CDS YP_001186461.1 146305996 5108819 complement(1086702..1087262) 1 NC_009439.1 TIGRFAM: type IV pilus modification protein PilV; type IV pilus modification protein PilV 1087262 5108819 Pmen_0961 Pseudomonas mendocina ymp type IV pilus modification protein PilV YP_001186461.1 1086702 R 399739 CDS YP_001186462.1 146305997 5108820 complement(1087271..1087759) 1 NC_009439.1 Tfp pilus assembly protein FimT-like protein 1087759 5108820 Pmen_0962 Pseudomonas mendocina ymp Tfp pilus assembly protein FimT-like protein YP_001186462.1 1087271 R 399739 CDS YP_001186463.1 146305998 5108821 complement(1087901..1088410) 1 NC_009439.1 Tfp pilus assembly protein FimT-like protein 1088410 5108821 Pmen_0963 Pseudomonas mendocina ymp Tfp pilus assembly protein FimT-like protein YP_001186463.1 1087901 R 399739 CDS YP_001186464.1 146305999 5108586 1088508..1089593 1 NC_009439.1 TIGRFAM: glycine oxidase ThiO; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; glycine oxidase ThiO 1089593 5108586 Pmen_0964 Pseudomonas mendocina ymp glycine oxidase ThiO YP_001186464.1 1088508 D 399739 CDS YP_001186465.1 146306000 5108587 complement(1089656..1090996) 1 NC_009439.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two-component response regulator PilR 1090996 5108587 Pmen_0965 Pseudomonas mendocina ymp two-component response regulator PilR YP_001186465.1 1089656 R 399739 CDS YP_001186466.1 146306001 5108588 complement(1090999..1092591) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; sensor protein PilS 1092591 5108588 Pmen_0966 Pseudomonas mendocina ymp sensor protein PilS YP_001186466.1 1090999 R 399739 CDS YP_001186467.1 146306002 5108589 complement(1092581..1092823) 1 NC_009439.1 hypothetical protein 1092823 5108589 Pmen_0967 Pseudomonas mendocina ymp hypothetical protein YP_001186467.1 1092581 R 399739 CDS YP_001186468.1 146306003 5108590 complement(1093035..1094027) 1 NC_009439.1 DNA uptake lipoprotein-like protein 1094027 5108590 Pmen_0968 Pseudomonas mendocina ymp DNA uptake lipoprotein-like protein YP_001186468.1 1093035 R 399739 CDS YP_001186469.1 146306004 5108591 1094369..1095343 1 NC_009439.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase D 1095343 5108591 Pmen_0969 Pseudomonas mendocina ymp ribosomal large subunit pseudouridine synthase D YP_001186469.1 1094369 D 399739 CDS YP_001186470.1 146306005 5108592 1095340..1096071 1 NC_009439.1 PFAM: protein of unknown function DUF152; hypothetical protein 1096071 5108592 Pmen_0970 Pseudomonas mendocina ymp hypothetical protein YP_001186470.1 1095340 D 399739 CDS YP_001186471.1 146306006 5108593 1096193..1096795 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1096795 5108593 Pmen_0971 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001186471.1 1096193 D 399739 CDS YP_001186472.1 146306007 5108594 1096822..1097931 1 NC_009439.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1097931 5108594 Pmen_0972 Pseudomonas mendocina ymp NADH:flavin oxidoreductase YP_001186472.1 1096822 D 399739 CDS YP_001186473.1 146306008 5108595 1097978..1098379 1 NC_009439.1 hypothetical protein 1098379 5108595 Pmen_0973 Pseudomonas mendocina ymp hypothetical protein YP_001186473.1 1097978 D 399739 CDS YP_001186474.1 146306009 5108596 complement(1098433..1099635) 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1099635 5108596 Pmen_0974 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001186474.1 1098433 R 399739 CDS YP_001186475.1 146306010 5108597 1099807..1100916 1 NC_009439.1 hypothetical protein 1100916 5108597 Pmen_0975 Pseudomonas mendocina ymp hypothetical protein YP_001186475.1 1099807 D 399739 CDS YP_001186476.1 146306011 5108598 complement(1100913..1101653) 1 NC_009439.1 putative role in sulfur assimilation; putative sulfate transport protein CysZ 1101653 5108598 Pmen_0976 Pseudomonas mendocina ymp putative sulfate transport protein CysZ YP_001186476.1 1100913 R 399739 CDS YP_001186477.1 146306012 5108599 complement(1101725..1103698) 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; CHASE4 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1103698 5108599 Pmen_0977 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase YP_001186477.1 1101725 R 399739 CDS YP_001186478.1 146306013 5108600 1103939..1104886 1 NC_009439.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 1104886 5108600 Pmen_0978 Pseudomonas mendocina ymp thioredoxin reductase YP_001186478.1 1103939 D 399739 CDS YP_001186479.1 146306014 5108601 complement(1104961..1107792) 1 NC_009439.1 hypothetical protein 1107792 5108601 Pmen_0979 Pseudomonas mendocina ymp hypothetical protein YP_001186479.1 1104961 R 399739 CDS YP_001186480.1 146306015 5108602 complement(1107789..1108481) 1 NC_009439.1 hypothetical protein 1108481 5108602 Pmen_0980 Pseudomonas mendocina ymp hypothetical protein YP_001186480.1 1107789 R 399739 CDS YP_001186481.1 146306016 5108603 complement(1108566..1109807) 1 NC_009439.1 hypothetical protein 1109807 5108603 Pmen_0981 Pseudomonas mendocina ymp hypothetical protein YP_001186481.1 1108566 R 399739 CDS YP_001186482.1 146306017 5108604 1110033..1110638 1 NC_009439.1 hypothetical protein 1110638 5108604 Pmen_0982 Pseudomonas mendocina ymp hypothetical protein YP_001186482.1 1110033 D 399739 CDS YP_001186483.1 146306018 5108605 1110830..1111858 1 NC_009439.1 hypothetical protein 1111858 5108605 Pmen_0983 Pseudomonas mendocina ymp hypothetical protein YP_001186483.1 1110830 D 399739 CDS YP_001186484.1 146306019 5108606 1111861..1112922 1 NC_009439.1 hypothetical protein 1112922 5108606 Pmen_0984 Pseudomonas mendocina ymp hypothetical protein YP_001186484.1 1111861 D 399739 CDS YP_001186485.1 146306020 5108607 1112909..1113499 1 NC_009439.1 hypothetical protein 1113499 5108607 Pmen_0985 Pseudomonas mendocina ymp hypothetical protein YP_001186485.1 1112909 D 399739 CDS YP_001186486.1 146306021 5108608 1113511..1115838 1 NC_009439.1 hypothetical protein 1115838 5108608 Pmen_0986 Pseudomonas mendocina ymp hypothetical protein YP_001186486.1 1113511 D 399739 CDS YP_001186487.1 146306022 5108609 1116078..1117175 1 NC_009439.1 TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; carboxynorspermidine decarboxylase 1117175 5108609 Pmen_0987 Pseudomonas mendocina ymp carboxynorspermidine decarboxylase YP_001186487.1 1116078 D 399739 CDS YP_001186488.1 146306023 5108610 1117303..1118544 1 NC_009439.1 PFAM: Saccharopine dehydrogenase; saccharopine dehydrogenase 1118544 5108610 Pmen_0988 Pseudomonas mendocina ymp saccharopine dehydrogenase YP_001186488.1 1117303 D 399739 CDS YP_001186489.1 146306024 5108611 1118765..1120312 1 NC_009439.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1120312 5108611 Pmen_0989 Pseudomonas mendocina ymp 2-isopropylmalate synthase YP_001186489.1 1118765 D 399739 CDS YP_001186490.1 146306025 5108612 1120309..1121088 1 NC_009439.1 hypothetical protein 1121088 5108612 Pmen_0990 Pseudomonas mendocina ymp hypothetical protein YP_001186490.1 1120309 D 399739 CDS YP_001186491.1 146306026 5108613 1121243..1121695 1 NC_009439.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; 30S ribosomal protein S18P alanine acetyltransferase 1121695 5108613 Pmen_0991 Pseudomonas mendocina ymp 30S ribosomal protein S18P alanine acetyltransferase YP_001186491.1 1121243 D 399739 CDS YP_001186492.1 146306027 5108614 complement(1121786..1122103) 1 NC_009439.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 1122103 5108614 Pmen_0992 Pseudomonas mendocina ymp Rieske (2Fe-2S) domain-containing protein YP_001186492.1 1121786 R 399739 CDS YP_001186493.1 146306028 5108615 1122531..1123430 1 NC_009439.1 PFAM: periplasmic binding protein; periplasmic binding protein 1123430 5108615 Pmen_0993 Pseudomonas mendocina ymp periplasmic binding protein YP_001186493.1 1122531 D 399739 CDS YP_001186494.1 146306029 5108616 1123427..1124467 1 NC_009439.1 PFAM: transport system permease protein; transport system permease 1124467 5108616 Pmen_0994 Pseudomonas mendocina ymp transport system permease YP_001186494.1 1123427 D 399739 CDS YP_001186495.1 146306030 5108617 1124467..1125234 1 NC_009439.1 with HmuTU is involved in the transport of hemin; hemin importer ATP-binding subunit 1125234 hmuV 5108617 hmuV Pseudomonas mendocina ymp hemin importer ATP-binding subunit YP_001186495.1 1124467 D 399739 CDS YP_001186496.1 146306031 5108618 1125250..1126134 1 NC_009439.1 PFAM: protein of unknown function DUF399; hypothetical protein 1126134 5108618 Pmen_0996 Pseudomonas mendocina ymp hypothetical protein YP_001186496.1 1125250 D 399739 CDS YP_001186497.1 146306032 5108619 1126194..1126601 1 NC_009439.1 hypothetical protein 1126601 5108619 Pmen_0997 Pseudomonas mendocina ymp hypothetical protein YP_001186497.1 1126194 D 399739 CDS YP_001186498.1 146306033 5108620 complement(1126863..1127660) 1 NC_009439.1 PFAM: cyclic nucleotide-binding; cyclic nucleotide-binding protein 1127660 5108620 Pmen_0998 Pseudomonas mendocina ymp cyclic nucleotide-binding protein YP_001186498.1 1126863 R 399739 CDS YP_001186499.1 146306034 5108621 complement(1127766..1128038) 1 NC_009439.1 PFAM: TfoX, C-terminal domain protein; TfoX domain-containing protein 1128038 5108621 Pmen_0999 Pseudomonas mendocina ymp TfoX domain-containing protein YP_001186499.1 1127766 R 399739 CDS YP_001186500.1 146306035 5108622 complement(1128120..1128476) 1 NC_009439.1 PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein 1128476 5108622 Pmen_1000 Pseudomonas mendocina ymp pentapeptide repeat-containing protein YP_001186500.1 1128120 R 399739 CDS YP_001186501.1 146306036 5108623 complement(1128552..1130207) 1 NC_009439.1 hypothetical protein 1130207 5108623 Pmen_1001 Pseudomonas mendocina ymp hypothetical protein YP_001186501.1 1128552 R 399739 CDS YP_001186502.1 146306037 5108624 1130230..1132548 1 NC_009439.1 TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 1132548 5108624 Pmen_1002 Pseudomonas mendocina ymp penicillin-binding protein 1B YP_001186502.1 1130230 D 399739 CDS YP_001186503.1 146306038 5108625 1132616..1133296 1 NC_009439.1 PFAM: Tetratricopeptide TPR_4; hypothetical protein 1133296 5108625 Pmen_1003 Pseudomonas mendocina ymp hypothetical protein YP_001186503.1 1132616 D 399739 CDS YP_001186504.1 146306039 5108626 1133296..1133625 1 NC_009439.1 PFAM: protein of unknown function DUF446; hypothetical protein 1133625 5108626 Pmen_1004 Pseudomonas mendocina ymp hypothetical protein YP_001186504.1 1133296 D 399739 CDS YP_001186505.1 146306040 5108627 complement(1133638..1134072) 1 NC_009439.1 hypothetical protein 1134072 5108627 Pmen_1005 Pseudomonas mendocina ymp hypothetical protein YP_001186505.1 1133638 R 399739 CDS YP_001186506.1 146306041 5108628 1134473..1136197 1 NC_009439.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 1136197 5108628 Pmen_1006 Pseudomonas mendocina ymp acetolactate synthase 3 catalytic subunit YP_001186506.1 1134473 D 399739 CDS YP_001186507.1 146306042 5108629 1136199..1136690 1 NC_009439.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 1136690 ilvH 5108629 ilvH Pseudomonas mendocina ymp acetolactate synthase 3 regulatory subunit YP_001186507.1 1136199 D 399739 CDS YP_001186508.1 146306043 5108630 complement(1136745..1137626) 1 NC_009439.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 1137626 5108630 Pmen_1008 Pseudomonas mendocina ymp DNA-binding transcriptional regulator IlvY YP_001186508.1 1136745 R 399739 CDS YP_001186509.1 146306044 5108631 1137752..1138768 1 NC_009439.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1138768 5108631 Pmen_1009 Pseudomonas mendocina ymp ketol-acid reductoisomerase YP_001186509.1 1137752 D 399739 CDS YP_001186510.1 146306045 5108632 1138916..1139731 1 NC_009439.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 1139731 5108632 Pmen_1010 Pseudomonas mendocina ymp CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001186510.1 1138916 D 399739 CDS YP_001186511.1 146306046 5108633 1139798..1140808 1 NC_009439.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY 1140808 5108633 Pmen_1011 Pseudomonas mendocina ymp putative sulfite oxidase subunit YedY YP_001186511.1 1139798 D 399739 CDS YP_001186512.1 146306047 5108634 1140808..1141434 1 NC_009439.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ 1141434 5108634 Pmen_1012 Pseudomonas mendocina ymp putative sulfite oxidase subunit YedZ YP_001186512.1 1140808 D 399739 CDS YP_001186513.1 146306048 5106552 1147388..1148047 1 NC_009439.1 PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 1148047 5106552 Pmen_1013 Pseudomonas mendocina ymp paraquat-inducible protein A YP_001186513.1 1147388 D 399739 CDS YP_001186514.1 146306049 5108636 1148034..1148651 1 NC_009439.1 PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 1148651 5108636 Pmen_1014 Pseudomonas mendocina ymp paraquat-inducible protein A YP_001186514.1 1148034 D 399739 CDS YP_001186515.1 146306050 5108637 1148644..1150947 1 NC_009439.1 PFAM: Mammalian cell entry related domain protein; hypothetical protein 1150947 5108637 Pmen_1015 Pseudomonas mendocina ymp hypothetical protein YP_001186515.1 1148644 D 399739 CDS YP_001186516.1 146306051 5108638 complement(1151048..1152208) 1 NC_009439.1 PFAM: SMC domain protein; SMC domain-containing protein 1152208 5108638 Pmen_1016 Pseudomonas mendocina ymp SMC domain-containing protein YP_001186516.1 1151048 R 399739 CDS YP_001186517.1 146306052 5108639 complement(1152233..1152601) 1 NC_009439.1 hypothetical protein 1152601 5108639 Pmen_1017 Pseudomonas mendocina ymp hypothetical protein YP_001186517.1 1152233 R 399739 CDS YP_001186518.1 146306053 5108640 complement(1152598..1153494) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 1153494 5108640 Pmen_1018 Pseudomonas mendocina ymp short chain dehydrogenase YP_001186518.1 1152598 R 399739 CDS YP_001186519.1 146306054 5108641 complement(1153519..1153983) 1 NC_009439.1 hypothetical protein 1153983 5108641 Pmen_1019 Pseudomonas mendocina ymp hypothetical protein YP_001186519.1 1153519 R 399739 CDS YP_001186520.1 146306055 5108642 complement(1154161..1155597) 1 NC_009439.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase 1155597 5108642 Pmen_1020 Pseudomonas mendocina ymp mannose-1-phosphate guanylyltransferase YP_001186520.1 1154161 R 399739 CDS YP_001186521.1 146306056 5108643 complement(1155692..1156339) 1 NC_009439.1 hypothetical protein 1156339 5108643 Pmen_1021 Pseudomonas mendocina ymp hypothetical protein YP_001186521.1 1155692 R 399739 CDS YP_001186522.1 146306057 5108644 complement(1156377..1157510) 1 NC_009439.1 hypothetical protein 1157510 5108644 Pmen_1022 Pseudomonas mendocina ymp hypothetical protein YP_001186522.1 1156377 R 399739 CDS YP_001186523.1 146306058 5108645 complement(1157524..1158975) 1 NC_009439.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase, MBOAT family protein 1158975 5108645 Pmen_1023 Pseudomonas mendocina ymp membrane bound O-acyl transferase, MBOAT family protein YP_001186523.1 1157524 R 399739 CDS YP_001186524.1 146306059 5108646 complement(1159160..1160236) 1 NC_009439.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 1160236 algL 5108646 algL Pseudomonas mendocina ymp poly(beta-D-mannuronate) lyase YP_001186524.1 1159160 R 399739 CDS YP_001186525.1 146306060 5108647 complement(1160247..1161677) 1 NC_009439.1 hypothetical protein 1161677 5108647 Pmen_1025 Pseudomonas mendocina ymp hypothetical protein YP_001186525.1 1160247 R 399739 CDS YP_001186526.1 146306061 5108648 complement(1161689..1163224) 1 NC_009439.1 SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; carbohydrate-binding and sugar hydrolysis protein 1163224 5108648 Pmen_1026 Pseudomonas mendocina ymp carbohydrate-binding and sugar hydrolysis protein YP_001186526.1 1161689 R 399739 CDS YP_001186527.1 146306062 5108649 complement(1163236..1164693) 1 NC_009439.1 hypothetical protein 1164693 5108649 Pmen_1027 Pseudomonas mendocina ymp hypothetical protein YP_001186527.1 1163236 R 399739 CDS YP_001186528.1 146306063 5108650 complement(1164690..1166066) 1 NC_009439.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 1166066 5108650 Pmen_1028 Pseudomonas mendocina ymp Sel1 domain-containing protein YP_001186528.1 1164690 R 399739 CDS YP_001186529.1 146306064 5108651 complement(1166077..1167240) 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 1167240 5108651 Pmen_1029 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001186529.1 1166077 R 399739 CDS YP_001186530.1 146306065 5108652 complement(1167267..1168748) 1 NC_009439.1 hypothetical protein 1168748 5108652 Pmen_1030 Pseudomonas mendocina ymp hypothetical protein YP_001186530.1 1167267 R 399739 CDS YP_001186531.1 146306066 5108653 complement(1168797..1170107) 1 NC_009439.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; GDP-mannose 6-dehydrogenase 1170107 5108653 Pmen_1031 Pseudomonas mendocina ymp GDP-mannose 6-dehydrogenase YP_001186531.1 1168797 R 399739 CDS YP_001186532.1 146306067 5108654 complement(1170805..1171584) 1 NC_009439.1 PFAM: protein of unknown function DUF328; hypothetical protein 1171584 5108654 Pmen_1032 Pseudomonas mendocina ymp hypothetical protein YP_001186532.1 1170805 R 399739 CDS YP_001186533.1 146306068 5108655 1172007..1173398 1 NC_009439.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; PhoH family protein 1173398 5108655 Pmen_1033 Pseudomonas mendocina ymp PhoH family protein YP_001186533.1 1172007 D 399739 CDS YP_001186534.1 146306069 5108656 1173563..1174039 1 NC_009439.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 1174039 moaC 5108656 moaC Pseudomonas mendocina ymp molybdenum cofactor biosynthesis protein MoaC YP_001186534.1 1173563 D 399739 CDS YP_001186535.1 146306070 5108657 1174036..1174278 1 NC_009439.1 TIGRFAM: MoaD family protein; PFAM: thiamineS protein; molybdopterin synthase subunit MoaD 1174278 5108657 Pmen_1035 Pseudomonas mendocina ymp molybdopterin synthase subunit MoaD YP_001186535.1 1174036 D 399739 CDS YP_001186536.1 146306071 5108658 1174432..1174884 1 NC_009439.1 PFAM: molybdopterin biosynthesis MoaE protein; molybdopterin synthase subunit MoaE 1174884 5108658 Pmen_1036 Pseudomonas mendocina ymp molybdopterin synthase subunit MoaE YP_001186536.1 1174432 D 399739 CDS YP_001186537.1 146306072 5108659 complement(1175042..1175206) 1 NC_009439.1 hypothetical protein 1175206 5108659 Pmen_1037 Pseudomonas mendocina ymp hypothetical protein YP_001186537.1 1175042 R 399739 CDS YP_001186538.1 146306073 5108660 1175380..1177296 1 NC_009439.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; metallophosphoesterase 1177296 5108660 Pmen_1038 Pseudomonas mendocina ymp metallophosphoesterase YP_001186538.1 1175380 D 399739 CDS YP_001186539.1 146306074 5108661 1177587..1178498 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1178498 5108661 Pmen_1039 Pseudomonas mendocina ymp hypothetical protein YP_001186539.1 1177587 D 399739 CDS YP_001186540.1 146306075 5108662 1178600..1179178 1 NC_009439.1 hypothetical protein 1179178 5108662 Pmen_1040 Pseudomonas mendocina ymp hypothetical protein YP_001186540.1 1178600 D 399739 CDS YP_001186541.1 146306076 5108663 complement(1179187..1179633) 1 NC_009439.1 hypothetical protein 1179633 5108663 Pmen_1041 Pseudomonas mendocina ymp hypothetical protein YP_001186541.1 1179187 R 399739 CDS YP_001186542.1 146306077 5107702 complement(1179660..1179824) 1 NC_009439.1 hypothetical protein 1179824 5107702 Pmen_1042 Pseudomonas mendocina ymp hypothetical protein YP_001186542.1 1179660 R 399739 CDS YP_001186543.1 146306078 5107703 1179846..1180316 1 NC_009439.1 hypothetical protein 1180316 5107703 Pmen_1043 Pseudomonas mendocina ymp hypothetical protein YP_001186543.1 1179846 D 399739 CDS YP_001186544.1 146306079 5107704 complement(1180313..1180540) 1 NC_009439.1 hypothetical protein 1180540 5107704 Pmen_1044 Pseudomonas mendocina ymp hypothetical protein YP_001186544.1 1180313 R 399739 CDS YP_001186545.1 146306080 5106553 complement(1180935..1181354) 1 NC_009439.1 PFAM: PilT protein domain protein; PilT domain-containing protein 1181354 5106553 Pmen_1045 Pseudomonas mendocina ymp PilT domain-containing protein YP_001186545.1 1180935 R 399739 CDS YP_001186546.1 146306081 5107706 complement(1181351..1181596) 1 NC_009439.1 hypothetical protein 1181596 5107706 Pmen_1046 Pseudomonas mendocina ymp hypothetical protein YP_001186546.1 1181351 R 399739 CDS YP_001186547.1 146306082 5106554 1183089..1186739 1 NC_009439.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; signal transduction protein 1186739 5106554 Pmen_1048 Pseudomonas mendocina ymp signal transduction protein YP_001186547.1 1183089 D 399739 CDS YP_001186548.1 146306083 5107708 1187239..1187598 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 1187598 5107708 Pmen_1049 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001186548.1 1187239 D 399739 CDS YP_001186549.1 146306084 5107709 1187618..1189180 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 1189180 5107709 Pmen_1050 Pseudomonas mendocina ymp transposase IS66 YP_001186549.1 1187618 D 399739 CDS YP_001186550.1 146306085 5107710 complement(1189194..1189757) 1 NC_009439.1 hypothetical protein 1189757 5107710 Pmen_1051 Pseudomonas mendocina ymp hypothetical protein YP_001186550.1 1189194 R 399739 CDS YP_001186551.1 146306086 5107711 complement(1189980..1191080) 1 NC_009439.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1191080 5107711 Pmen_1052 Pseudomonas mendocina ymp GTP-dependent nucleic acid-binding protein EngD YP_001186551.1 1189980 R 399739 CDS YP_001186552.1 146306087 5107712 complement(1191106..1191696) 1 NC_009439.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1191696 5107712 Pmen_1053 Pseudomonas mendocina ymp peptidyl-tRNA hydrolase YP_001186552.1 1191106 R 399739 CDS YP_001186553.1 146306088 5107713 complement(1191760..1192365) 1 NC_009439.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1192365 5107713 Pmen_1054 Pseudomonas mendocina ymp 50S ribosomal protein L25/general stress protein Ctc YP_001186553.1 1191760 R 399739 CDS YP_001186554.1 146306089 5107714 complement(1192471..1193403) 1 NC_009439.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1193403 5107714 Pmen_1055 Pseudomonas mendocina ymp ribose-phosphate pyrophosphokinase YP_001186554.1 1192471 R 399739 CDS YP_001186555.1 146306090 5106556 complement(1193690..1194565) 1 NC_009439.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1194565 ipk 5106556 ipk Pseudomonas mendocina ymp 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001186555.1 1193690 R 399739 CDS YP_001186556.1 146306091 5107716 complement(1194826..1195440) 1 NC_009439.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1195440 lolB 5107716 lolB Pseudomonas mendocina ymp outer membrane lipoprotein LolB YP_001186556.1 1194826 R 399739 CDS YP_001186557.1 146306092 5107717 complement(1195440..1197167) 1 NC_009439.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 1197167 5107717 Pmen_1058 Pseudomonas mendocina ymp hypothetical protein YP_001186557.1 1195440 R 399739 CDS YP_001186558.1 146306093 5107718 1197377..1198657 1 NC_009439.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1198657 hemA 5107718 hemA Pseudomonas mendocina ymp glutamyl-tRNA reductase YP_001186558.1 1197377 D 399739 CDS YP_001186559.1 146306094 5107719 1198654..1199736 1 NC_009439.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1199736 prfA 5107719 prfA Pseudomonas mendocina ymp peptide chain release factor 1 YP_001186559.1 1198654 D 399739 CDS YP_001186560.1 146306095 5107720 1199801..1200685 1 NC_009439.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; HemK family modification methylase 1200685 5107720 Pmen_1061 Pseudomonas mendocina ymp HemK family modification methylase YP_001186560.1 1199801 D 399739 CDS YP_001186561.1 146306096 5107721 1200678..1201439 1 NC_009439.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 1201439 5107721 Pmen_1062 Pseudomonas mendocina ymp molybdopterin biosynthesis protein MoeB YP_001186561.1 1200678 D 399739 CDS YP_001186562.1 146306097 5107722 1201473..1202264 1 NC_009439.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1202264 5107722 Pmen_1063 Pseudomonas mendocina ymp glutamate racemase YP_001186562.1 1201473 D 399739 CDS YP_001186563.1 146306098 5107723 1202367..1202882 1 NC_009439.1 hypothetical protein 1202882 5107723 Pmen_1064 Pseudomonas mendocina ymp hypothetical protein YP_001186563.1 1202367 D 399739 CDS YP_001186564.1 146306099 5107724 complement(1202964..1203488) 1 NC_009439.1 hypothetical protein 1203488 5107724 Pmen_1065 Pseudomonas mendocina ymp hypothetical protein YP_001186564.1 1202964 R 399739 CDS YP_001186565.1 146306100 5107725 complement(1203481..1204755) 1 NC_009439.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 1204755 5107725 Pmen_1066 Pseudomonas mendocina ymp cyclopropane-fatty-acyl-phospholipid synthase YP_001186565.1 1203481 R 399739 CDS YP_001186566.1 146306101 5107726 complement(1204742..1205542) 1 NC_009439.1 PFAM: protein of unknown function DUF1365; hypothetical protein 1205542 5107726 Pmen_1067 Pseudomonas mendocina ymp hypothetical protein YP_001186566.1 1204742 R 399739 CDS YP_001186567.1 146306102 5107727 complement(1205542..1206789) 1 NC_009439.1 PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 1206789 5107727 Pmen_1068 Pseudomonas mendocina ymp amine oxidase YP_001186567.1 1205542 R 399739 CDS YP_001186568.1 146306103 5107728 complement(1206786..1207541) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; short-chain dehydrogenase/reductase SDR 1207541 5107728 Pmen_1069 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001186568.1 1206786 R 399739 CDS YP_001186569.1 146306104 5107729 complement(1207538..1207960) 1 NC_009439.1 PFAM: protein of unknown function DUF1486; hypothetical protein 1207960 5107729 Pmen_1070 Pseudomonas mendocina ymp hypothetical protein YP_001186569.1 1207538 R 399739 CDS YP_001186570.1 146306105 5107730 complement(1207957..1209390) 1 NC_009439.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase type I 1209390 5107730 Pmen_1071 Pseudomonas mendocina ymp deoxyribodipyrimidine photo-lyase type I YP_001186570.1 1207957 R 399739 CDS YP_001186571.1 146306106 5107731 complement(1209378..1210340) 1 NC_009439.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 1210340 5107731 Pmen_1072 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001186571.1 1209378 R 399739 CDS YP_001186572.1 146306107 5107732 complement(1210340..1211290) 1 NC_009439.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; hypothetical protein 1211290 5107732 Pmen_1073 Pseudomonas mendocina ymp hypothetical protein YP_001186572.1 1210340 R 399739 CDS YP_001186573.1 146306108 5107733 complement(1211545..1211775) 1 NC_009439.1 hypothetical protein 1211775 5107733 Pmen_1074 Pseudomonas mendocina ymp hypothetical protein YP_001186573.1 1211545 R 399739 CDS YP_001186574.1 146306109 5107734 complement(1211772..1212758) 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 1212758 5107734 Pmen_1075 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001186574.1 1211772 R 399739 CDS YP_001186575.1 146306110 5107735 1212941..1213864 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; domain of unknown function DUF1731; NAD-dependent epimerase/dehydratase 1213864 5107735 Pmen_1076 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001186575.1 1212941 D 399739 CDS YP_001186576.1 146306111 5107736 1213877..1214899 1 NC_009439.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1214899 hemH 5107736 hemH Pseudomonas mendocina ymp ferrochelatase YP_001186576.1 1213877 D 399739 CDS YP_001186577.1 146306112 5107737 1215064..1216395 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1216395 5107737 Pmen_1078 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001186577.1 1215064 D 399739 CDS YP_001186578.1 146306113 5107738 1216527..1217297 1 NC_009439.1 hypothetical protein 1217297 5107738 Pmen_1079 Pseudomonas mendocina ymp hypothetical protein YP_001186578.1 1216527 D 399739 CDS YP_001186579.1 146306114 5107739 complement(1217304..1218029) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1218029 5107739 Pmen_1080 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186579.1 1217304 R 399739 CDS YP_001186580.1 146306115 5107740 complement(1218109..1218450) 1 NC_009439.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein-like; alkylphosphonate utilization operon protein PhnA 1218450 5107740 Pmen_1081 Pseudomonas mendocina ymp alkylphosphonate utilization operon protein PhnA YP_001186580.1 1218109 R 399739 CDS YP_001186581.1 146306116 5107741 1218919..1219698 1 NC_009439.1 PFAM: glutamine amidotransferase class-I; peptidase C26; peptidase C26 1219698 5107741 Pmen_1082 Pseudomonas mendocina ymp peptidase C26 YP_001186581.1 1218919 D 399739 CDS YP_001186582.1 146306117 5108056 complement(1219727..1220680) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1220680 5108056 Pmen_1083 Pseudomonas mendocina ymp hypothetical protein YP_001186582.1 1219727 R 399739 CDS YP_001186583.1 146306118 5108057 complement(1220704..1221135) 1 NC_009439.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 1221135 5108057 Pmen_1084 Pseudomonas mendocina ymp alkylhydroperoxidase YP_001186583.1 1220704 R 399739 CDS YP_001186584.1 146306119 5108058 1221276..1222703 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 1222703 5108058 Pmen_1085 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001186584.1 1221276 D 399739 CDS YP_001186585.1 146306120 5108059 complement(1222697..1223170) 1 NC_009439.1 SMART: Water Stress and Hypersensitive response; water stress/hypersensitive response protein 1223170 5108059 Pmen_1086 Pseudomonas mendocina ymp water stress/hypersensitive response protein YP_001186585.1 1222697 R 399739 CDS YP_001186586.1 146306121 5108060 complement(1223225..1224070) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1224070 5108060 Pmen_1087 Pseudomonas mendocina ymp hypothetical protein YP_001186586.1 1223225 R 399739 CDS YP_001186587.1 146306122 5108061 complement(1224157..1224921) 1 NC_009439.1 PFAM: Phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 1224921 5108061 Pmen_1088 Pseudomonas mendocina ymp phytanoyl-CoA dioxygenase YP_001186587.1 1224157 R 399739 CDS YP_001186588.1 146306123 5108062 complement(1225021..1225950) 1 NC_009439.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator 1225950 5108062 Pmen_1089 Pseudomonas mendocina ymp RpiR family transcriptional regulator YP_001186588.1 1225021 R 399739 CDS YP_001186589.1 146306124 5108063 complement(1226019..1226783) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1226783 5108063 Pmen_1090 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186589.1 1226019 R 399739 CDS YP_001186590.1 146306125 5108064 complement(1226808..1227920) 1 NC_009439.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 1227920 5108064 Pmen_1091 Pseudomonas mendocina ymp succinylglutamate desuccinylase/aspartoacylase YP_001186590.1 1226808 R 399739 CDS YP_001186591.1 146306126 5108065 complement(1227933..1228628) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1228628 5108065 Pmen_1092 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001186591.1 1227933 R 399739 CDS YP_001186592.1 146306127 5108066 complement(1228640..1229329) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1229329 5108066 Pmen_1093 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001186592.1 1228640 R 399739 CDS YP_001186593.1 146306128 5108067 complement(1229395..1230171) 1 NC_009439.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; cationic amino acid ABC transporter periplasmic binding protein 1230171 5108067 Pmen_1094 Pseudomonas mendocina ymp cationic amino acid ABC transporter periplasmic binding protein YP_001186593.1 1229395 R 399739 CDS YP_001186594.1 146306129 5108068 1230548..1232311 1 NC_009439.1 cyanophycinase-like protein 1232311 5108068 Pmen_1095 Pseudomonas mendocina ymp cyanophycinase-like protein YP_001186594.1 1230548 D 399739 CDS YP_001186595.1 146306130 5108069 1232390..1232710 1 NC_009439.1 hypothetical protein 1232710 5108069 Pmen_1096 Pseudomonas mendocina ymp hypothetical protein YP_001186595.1 1232390 D 399739 CDS YP_001186596.1 146306131 5108070 1232773..1234113 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 1234113 5108070 Pmen_1097 Pseudomonas mendocina ymp outer membrane porin YP_001186596.1 1232773 D 399739 CDS YP_001186597.1 146306132 5108071 1234268..1235032 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1235032 5108071 Pmen_1098 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186597.1 1234268 D 399739 CDS YP_001186598.1 146306133 5108072 1235125..1236381 1 NC_009439.1 TIGRFAM: cyanophycinase; cyanophycinase 1236381 5108072 Pmen_1099 Pseudomonas mendocina ymp cyanophycinase YP_001186598.1 1235125 D 399739 CDS YP_001186599.1 146306134 5108073 1236598..1237392 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; short-chain dehydrogenase/reductase SDR 1237392 5108073 Pmen_1100 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001186599.1 1236598 D 399739 CDS YP_001186600.1 146306135 5108074 complement(1237702..1238268) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1238268 5108074 Pmen_1101 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001186600.1 1237702 R 399739 CDS YP_001186601.1 146306136 5108075 complement(1238300..1238869) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1238869 5108075 Pmen_1102 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001186601.1 1238300 R 399739 CDS YP_001186602.1 146306137 5108076 1238953..1240152 1 NC_009439.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter 1240152 5108076 Pmen_1103 Pseudomonas mendocina ymp Bcr/CflA subfamily drug resistance transporter YP_001186602.1 1238953 D 399739 CDS YP_001186603.1 146306138 5108077 1240149..1241549 1 NC_009439.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1241549 5108077 Pmen_1104 Pseudomonas mendocina ymp dihydrolipoamide dehydrogenase YP_001186603.1 1240149 D 399739 CDS YP_001186604.1 146306139 5108078 complement(1241795..1242160) 1 NC_009439.1 hypothetical protein 1242160 5108078 Pmen_1105 Pseudomonas mendocina ymp hypothetical protein YP_001186604.1 1241795 R 399739 CDS YP_001186605.1 146306140 5108079 complement(1242209..1243135) 1 NC_009439.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 1243135 5108079 Pmen_1106 Pseudomonas mendocina ymp carbamate kinase YP_001186605.1 1242209 R 399739 CDS YP_001186606.1 146306141 5108080 complement(1243331..1244341) 1 NC_009439.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 1244341 5108080 Pmen_1107 Pseudomonas mendocina ymp ornithine carbamoyltransferase YP_001186606.1 1243331 R 399739 CDS YP_001186607.1 146306142 5108081 complement(1244408..1245658) 1 NC_009439.1 catalyzes the degradation of arginine to citruline and ammonia; arginine deiminase 1245658 5108081 Pmen_1108 Pseudomonas mendocina ymp arginine deiminase YP_001186607.1 1244408 R 399739 CDS YP_001186608.1 146306143 5108082 complement(1245675..1247102) 1 NC_009439.1 TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; arginine/ornithine antiporter 1247102 5108082 Pmen_1109 Pseudomonas mendocina ymp arginine/ornithine antiporter YP_001186608.1 1245675 R 399739 CDS YP_001186609.1 146306144 5108083 complement(1247558..1251493) 1 NC_009439.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1251493 putA 5108083 putA Pseudomonas mendocina ymp trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase YP_001186609.1 1247558 R 399739 CDS YP_001186610.1 146306145 5108084 1252055..1252270 1 NC_009439.1 hypothetical protein 1252270 5108084 Pmen_1111 Pseudomonas mendocina ymp hypothetical protein YP_001186610.1 1252055 D 399739 CDS YP_001186611.1 146306146 5108085 complement(1252298..1252525) 1 NC_009439.1 hypothetical protein 1252525 5108085 Pmen_1112 Pseudomonas mendocina ymp hypothetical protein YP_001186611.1 1252298 R 399739 CDS YP_001186612.1 146306147 5108086 complement(1252885..1253841) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1253841 5108086 Pmen_1113 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186612.1 1252885 R 399739 CDS YP_001186613.1 146306148 5108087 complement(1254035..1254637) 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 1254637 5108087 Pmen_1114 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001186613.1 1254035 R 399739 CDS YP_001186614.1 146306149 5108088 complement(1254637..1255050) 1 NC_009439.1 hypothetical protein 1255050 5108088 Pmen_1115 Pseudomonas mendocina ymp hypothetical protein YP_001186614.1 1254637 R 399739 CDS YP_001186615.1 146306150 5108089 1255146..1256039 1 NC_009439.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1256039 5108089 Pmen_1116 Pseudomonas mendocina ymp chromosome replication initiation inhibitor protein YP_001186615.1 1255146 D 399739 CDS YP_001186616.1 146306151 5108090 1256280..1257278 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 1257278 5108090 Pmen_1117 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001186616.1 1256280 D 399739 CDS YP_001186617.1 146306152 5108091 complement(1257269..1257556) 1 NC_009439.1 hypothetical protein 1257556 5108091 Pmen_1118 Pseudomonas mendocina ymp hypothetical protein YP_001186617.1 1257269 R 399739 CDS YP_001186618.1 146306153 5108092 1257905..1258753 1 NC_009439.1 hypothetical protein 1258753 5108092 Pmen_1119 Pseudomonas mendocina ymp hypothetical protein YP_001186618.1 1257905 D 399739 CDS YP_001186619.1 146306154 5108093 complement(1258945..1259994) 1 NC_009439.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1259994 5108093 Pmen_1120 Pseudomonas mendocina ymp NADH:flavin oxidoreductase YP_001186619.1 1258945 R 399739 CDS YP_001186620.1 146306155 5108094 complement(1260023..1260343) 1 NC_009439.1 PFAM: regulatory protein, ArsR; ArsR family transcriptional regulator 1260343 5108094 Pmen_1121 Pseudomonas mendocina ymp ArsR family transcriptional regulator YP_001186620.1 1260023 R 399739 CDS YP_001186621.1 146306156 5108095 1260446..1261021 1 NC_009439.1 PFAM: protein of unknown function DUF479; hypothetical protein 1261021 5108095 Pmen_1122 Pseudomonas mendocina ymp hypothetical protein YP_001186621.1 1260446 D 399739 CDS YP_001186622.1 146306157 5108096 complement(1261074..1263788) 1 NC_009439.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; P-type HAD superfamily ATPase 1263788 5108096 Pmen_1123 Pseudomonas mendocina ymp P-type HAD superfamily ATPase YP_001186622.1 1261074 R 399739 CDS YP_001186623.1 146306158 5108097 1263920..1264768 1 NC_009439.1 PFAM: UspA domain protein; UspA domain-containing protein 1264768 5108097 Pmen_1124 Pseudomonas mendocina ymp UspA domain-containing protein YP_001186623.1 1263920 D 399739 CDS YP_001186624.1 146306159 5108098 complement(1264776..1265549) 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; lyso-ornithine lipid acyltransferase 1265549 5108098 Pmen_1125 Pseudomonas mendocina ymp lyso-ornithine lipid acyltransferase YP_001186624.1 1264776 R 399739 CDS YP_001186625.1 146306160 5108099 complement(1265693..1266424) 1 NC_009439.1 ornithine-acyl[acyl carrier protein] N-acyltransferase 1266424 5108099 Pmen_1126 Pseudomonas mendocina ymp ornithine-acyl[acyl carrier protein] N-acyltransferase YP_001186625.1 1265693 R 399739 CDS YP_001186626.1 146306161 5108100 1266572..1267462 1 NC_009439.1 hypothetical protein 1267462 5108100 Pmen_1127 Pseudomonas mendocina ymp hypothetical protein YP_001186626.1 1266572 D 399739 CDS YP_001186627.1 146306162 5108101 1267529..1268314 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1268314 5108101 Pmen_1128 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001186627.1 1267529 D 399739 CDS YP_001186628.1 146306163 5108102 1268514..1269632 1 NC_009439.1 PFAM: beta-lactamase; beta-lactamase 1269632 5108102 Pmen_1129 Pseudomonas mendocina ymp beta-lactamase YP_001186628.1 1268514 D 399739 CDS YP_001186629.1 146306164 5108103 1269629..1269949 1 NC_009439.1 hypothetical protein 1269949 5108103 Pmen_1130 Pseudomonas mendocina ymp hypothetical protein YP_001186629.1 1269629 D 399739 CDS YP_001186630.1 146306165 5108104 1270024..1270650 1 NC_009439.1 PFAM: YceI family protein; hypothetical protein 1270650 5108104 Pmen_1131 Pseudomonas mendocina ymp hypothetical protein YP_001186630.1 1270024 D 399739 CDS YP_001186631.1 146306166 5108105 1270658..1271806 1 NC_009439.1 PFAM: phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 1271806 5108105 Pmen_1132 Pseudomonas mendocina ymp phospholipase D/transphosphatidylase YP_001186631.1 1270658 D 399739 CDS YP_001186632.1 146306167 5108106 1271975..1274719 1 NC_009439.1 superfamily I DNA/RNA helicase 1274719 5108106 Pmen_1133 Pseudomonas mendocina ymp superfamily I DNA/RNA helicase YP_001186632.1 1271975 D 399739 CDS YP_001186633.1 146306168 5108107 1275111..1276904 1 NC_009439.1 PFAM: protein of unknown function DUF1302; hypothetical protein 1276904 5108107 Pmen_1134 Pseudomonas mendocina ymp hypothetical protein YP_001186633.1 1275111 D 399739 CDS YP_001186634.1 146306169 5108108 1276926..1278299 1 NC_009439.1 PFAM: protein of unknown function DUF1329; hypothetical protein 1278299 5108108 Pmen_1135 Pseudomonas mendocina ymp hypothetical protein YP_001186634.1 1276926 D 399739 CDS YP_001186635.1 146306170 5108109 1278464..1281070 1 NC_009439.1 PFAM: regulatory protein, LuxR; SMART: Tetratricopeptide domain protein; regulatory protein LuxR 1281070 5108109 Pmen_1136 Pseudomonas mendocina ymp regulatory protein LuxR YP_001186635.1 1278464 D 399739 CDS YP_001186636.1 146306171 5108110 complement(1281218..1282606) 1 NC_009439.1 PFAM: short chain fatty acid transporter; short chain fatty acid transporter 1282606 5108110 Pmen_1137 Pseudomonas mendocina ymp short chain fatty acid transporter YP_001186636.1 1281218 R 399739 CDS YP_001186637.1 146306172 5108111 complement(1282716..1283897) 1 NC_009439.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1283897 5108111 Pmen_1138 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001186637.1 1282716 R 399739 CDS YP_001186638.1 146306173 5108112 complement(1284078..1284734) 1 NC_009439.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; butyryl-CoA:acetate CoA transferase 1284734 5108112 Pmen_1139 Pseudomonas mendocina ymp butyryl-CoA:acetate CoA transferase YP_001186638.1 1284078 R 399739 CDS YP_001186639.1 146306174 5108113 complement(1284745..1285443) 1 NC_009439.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 1285443 5108113 Pmen_1140 Pseudomonas mendocina ymp 3-oxoacid CoA-transferase subunit A YP_001186639.1 1284745 R 399739 CDS YP_001186640.1 146306175 5108114 1285548..1286441 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1286441 5108114 Pmen_1141 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186640.1 1285548 D 399739 CDS YP_001186641.1 146306176 5108115 complement(1286621..1287214) 1 NC_009439.1 MobA-like protein 1287214 5108115 Pmen_1142 Pseudomonas mendocina ymp MobA-like protein YP_001186641.1 1286621 R 399739 CDS YP_001186642.1 146306177 5108116 complement(1287332..1288186) 1 NC_009439.1 PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 1288186 5108116 Pmen_1143 Pseudomonas mendocina ymp ThiJ/PfpI domain-containing protein YP_001186642.1 1287332 R 399739 CDS YP_001186643.1 146306178 5108117 complement(1288183..1288506) 1 NC_009439.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1288506 5108117 Pmen_1144 Pseudomonas mendocina ymp antibiotic biosynthesis monooxygenase YP_001186643.1 1288183 R 399739 CDS YP_001186644.1 146306179 5108118 1288602..1289516 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1289516 5108118 Pmen_1145 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186644.1 1288602 D 399739 CDS YP_001186645.1 146306180 5108119 complement(1289550..1291748) 1 NC_009439.1 PFAM: OsmC family protein; protein of unknown function DUF181; hypothetical protein 1291748 5108119 Pmen_1146 Pseudomonas mendocina ymp hypothetical protein YP_001186645.1 1289550 R 399739 CDS YP_001186646.1 146306181 5108120 1292143..1293102 1 NC_009439.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1293102 glk 5108120 glk Pseudomonas mendocina ymp glucokinase YP_001186646.1 1292143 D 399739 CDS YP_001186647.1 146306182 5108121 1293159..1293890 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1293890 5108121 Pmen_1148 Pseudomonas mendocina ymp two component transcriptional regulator YP_001186647.1 1293159 D 399739 CDS YP_001186648.1 146306183 5108122 1293883..1295322 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1295322 5108122 Pmen_1149 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001186648.1 1293883 D 399739 CDS YP_001186649.1 146306184 5108123 1295525..1296778 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 1296778 5108123 Pmen_1150 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186649.1 1295525 D 399739 CDS YP_001186650.1 146306185 5108124 1296950..1297858 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1297858 5108124 Pmen_1151 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001186650.1 1296950 D 399739 CDS YP_001186651.1 146306186 5108125 1297851..1298729 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1298729 5108125 Pmen_1152 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001186651.1 1297851 D 399739 CDS YP_001186652.1 146306187 5108126 1298740..1299885 1 NC_009439.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 1299885 5108126 Pmen_1153 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186652.1 1298740 D 399739 CDS YP_001186653.1 146306188 5108127 1300004..1301239 1 NC_009439.1 PFAM: porin, LamB type; porin, LamB type 1301239 5108127 Pmen_1154 Pseudomonas mendocina ymp porin, LamB type YP_001186653.1 1300004 D 399739 CDS YP_001186654.1 146306189 5108128 1301233..1302129 1 NC_009439.1 PFAM: Aldose 1-epimerase; aldose 1-epimerase 1302129 5108128 Pmen_1155 Pseudomonas mendocina ymp aldose 1-epimerase YP_001186654.1 1301233 D 399739 CDS YP_001186655.1 146306190 5108129 complement(1302768..1303706) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1303706 5108129 Pmen_1156 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186655.1 1302768 R 399739 CDS YP_001186656.1 146306191 5108130 1303840..1304802 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1304802 5108130 Pmen_1157 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186656.1 1303840 D 399739 CDS YP_001186657.1 146306192 5108131 complement(1305137..1306102) 1 NC_009439.1 hypothetical protein 1306102 5108131 Pmen_1158 Pseudomonas mendocina ymp hypothetical protein YP_001186657.1 1305137 R 399739 CDS YP_001186658.1 146306193 5108132 1306575..1306763 1 NC_009439.1 PFAM: regulatory protein, MerR; Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 1306763 5108132 Pmen_1159 Pseudomonas mendocina ymp phage transcriptional regulator AlpA YP_001186658.1 1306575 D 399739 CDS YP_001186659.1 146306194 5108133 1307124..1308068 1 NC_009439.1 hypothetical protein 1308068 5108133 Pmen_1160 Pseudomonas mendocina ymp hypothetical protein YP_001186659.1 1307124 D 399739 CDS YP_001186660.1 146306195 5106557 1308712..1309512 1 NC_009439.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1309512 5106557 Pmen_1162 Pseudomonas mendocina ymp cation diffusion facilitator family transporter YP_001186660.1 1308712 D 399739 CDS YP_001186661.1 146306196 5108665 complement(1309845..1311407) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 1311407 5108665 Pmen_1163 Pseudomonas mendocina ymp transposase IS66 YP_001186661.1 1309845 R 399739 CDS YP_001186662.1 146306197 5108666 complement(1311427..1311786) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 1311786 5108666 Pmen_1164 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001186662.1 1311427 R 399739 CDS YP_001186663.1 146306198 5108667 complement(1311783..1312130) 1 NC_009439.1 hypothetical protein 1312130 5108667 Pmen_1165 Pseudomonas mendocina ymp hypothetical protein YP_001186663.1 1311783 R 399739 CDS YP_001186664.1 146306199 5108668 complement(1312255..1313568) 1 NC_009439.1 PFAM: phosphate-selective porin O and P; phosphate-selective porin O and P 1313568 5108668 Pmen_1166 Pseudomonas mendocina ymp phosphate-selective porin O and P YP_001186664.1 1312255 R 399739 CDS YP_001186665.1 146306200 5108669 1313987..1314904 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR family transcriptional regulator 1314904 5108669 Pmen_1167 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186665.1 1313987 D 399739 CDS YP_001186666.1 146306201 5108670 1314978..1316306 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 1316306 5108670 Pmen_1168 Pseudomonas mendocina ymp outer membrane porin YP_001186666.1 1314978 D 399739 CDS YP_001186667.1 146306202 5108671 1316658..1317959 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 1317959 5108671 Pmen_1169 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001186667.1 1316658 D 399739 CDS YP_001186668.1 146306203 5106558 1318463..1319803 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 1319803 5106558 Pmen_1171 Pseudomonas mendocina ymp outer membrane porin YP_001186668.1 1318463 D 399739 CDS YP_001186669.1 146306204 5108673 1319873..1320136 1 NC_009439.1 hypothetical protein 1320136 5108673 Pmen_1172 Pseudomonas mendocina ymp hypothetical protein YP_001186669.1 1319873 D 399739 CDS YP_001186670.1 146306205 5108674 complement(1320916..1322349) 1 NC_009439.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 1322349 5108674 Pmen_1173 Pseudomonas mendocina ymp heavy metal sensor signal transduction histidine kinase YP_001186670.1 1320916 R 399739 CDS YP_001186671.1 146306206 5108675 complement(1322346..1323020) 1 NC_009439.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 1323020 5108675 Pmen_1174 Pseudomonas mendocina ymp two component heavy metal response transcriptional regulator YP_001186671.1 1322346 R 399739 CDS YP_001186672.1 146306207 5108676 1323417..1324667 1 NC_009439.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 1324667 5108676 Pmen_1175 Pseudomonas mendocina ymp outer membrane efflux protein YP_001186672.1 1323417 D 399739 CDS YP_001186673.1 146306208 5108677 1324725..1325990 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1325990 5108677 Pmen_1176 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001186673.1 1324725 D 399739 CDS YP_001186674.1 146306209 5108678 1326013..1329159 1 NC_009439.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein 1329159 5108678 Pmen_1177 Pseudomonas mendocina ymp CzcA family heavy metal efflux protein YP_001186674.1 1326013 D 399739 CDS YP_001186675.1 146306210 5108679 complement(1329389..1330018) 1 NC_009439.1 hypothetical protein 1330018 5108679 Pmen_1178 Pseudomonas mendocina ymp hypothetical protein YP_001186675.1 1329389 R 399739 CDS YP_001186676.1 146306211 5108680 complement(1330113..1330457) 1 NC_009439.1 hypothetical protein 1330457 5108680 Pmen_1179 Pseudomonas mendocina ymp hypothetical protein YP_001186676.1 1330113 R 399739 CDS YP_001186677.1 146306212 5108681 1330538..1330783 1 NC_009439.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1330783 5108681 Pmen_1180 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001186677.1 1330538 D 399739 CDS YP_001186678.1 146306213 5108682 complement(1330812..1331309) 1 NC_009439.1 PFAM: DNA repair protein RadC; DNA repair protein RadC 1331309 5108682 Pmen_1181 Pseudomonas mendocina ymp DNA repair protein RadC YP_001186678.1 1330812 R 399739 CDS YP_001186679.1 146306214 5108683 complement(1331351..1332247) 1 NC_009439.1 hypothetical protein 1332247 5108683 Pmen_1182 Pseudomonas mendocina ymp hypothetical protein YP_001186679.1 1331351 R 399739 CDS YP_001186680.1 146306215 5108684 complement(1332336..1333340) 1 NC_009439.1 Phage-like protein endonuclease-like protein 1333340 5108684 Pmen_1183 Pseudomonas mendocina ymp Phage-like protein endonuclease-like protein YP_001186680.1 1332336 R 399739 CDS YP_001186681.1 146306216 5108685 complement(1333427..1334395) 1 NC_009439.1 hypothetical protein 1334395 5108685 Pmen_1184 Pseudomonas mendocina ymp hypothetical protein YP_001186681.1 1333427 R 399739 CDS YP_001186682.1 146306217 5108686 complement(1334488..1334814) 1 NC_009439.1 hypothetical protein 1334814 5108686 Pmen_1185 Pseudomonas mendocina ymp hypothetical protein YP_001186682.1 1334488 R 399739 CDS YP_001186683.1 146306218 5108687 1335369..1336154 1 NC_009439.1 hypothetical protein 1336154 5108687 Pmen_1186 Pseudomonas mendocina ymp hypothetical protein YP_001186683.1 1335369 D 399739 CDS YP_001186684.1 146306219 5108688 1336151..1339321 1 NC_009439.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1339321 5108688 Pmen_1187 Pseudomonas mendocina ymp DEAD/DEAH box helicase YP_001186684.1 1336151 D 399739 CDS YP_001186685.1 146306220 5108689 complement(1339379..1340638) 1 NC_009439.1 PFAM: phage integrase family protein; phage integrase family protein 1340638 5108689 Pmen_1188 Pseudomonas mendocina ymp phage integrase family protein YP_001186685.1 1339379 R 399739 CDS YP_001186686.1 146306221 5106559 1341311..1344226 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Cache domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; multi-sensor hybrid histidine kinase 1344226 5106559 Pmen_1189 Pseudomonas mendocina ymp multi-sensor hybrid histidine kinase YP_001186686.1 1341311 D 399739 CDS YP_001186687.1 146306222 5108691 complement(1344243..1344488) 1 NC_009439.1 hypothetical protein 1344488 5108691 Pmen_1190 Pseudomonas mendocina ymp hypothetical protein YP_001186687.1 1344243 R 399739 CDS YP_001186688.1 146306223 5108692 complement(1344554..1345579) 1 NC_009439.1 catalyzes the conversion of terminal3'-phosphate of RNA to the 2',3'-cyclicphosphodiester; RNA 3'-terminal-phosphate cyclase 1345579 5108692 Pmen_1191 Pseudomonas mendocina ymp RNA 3'-terminal-phosphate cyclase YP_001186688.1 1344554 R 399739 CDS YP_001186689.1 146306224 5108693 complement(1345681..1346469) 1 NC_009439.1 nucleotidyltransferase-like protein 1346469 5108693 Pmen_1192 Pseudomonas mendocina ymp nucleotidyltransferase-like protein YP_001186689.1 1345681 R 399739 CDS YP_001186690.1 146306225 5108694 complement(1346509..1347735) 1 NC_009439.1 PFAM: protein of unknown function UPF0027; hypothetical protein 1347735 5108694 Pmen_1193 Pseudomonas mendocina ymp hypothetical protein YP_001186690.1 1346509 R 399739 CDS YP_001186691.1 146306226 5108695 complement(1347732..1348130) 1 NC_009439.1 hypothetical protein 1348130 5108695 Pmen_1194 Pseudomonas mendocina ymp hypothetical protein YP_001186691.1 1347732 R 399739 CDS YP_001186692.1 146306227 5108696 complement(1348162..1349304) 1 NC_009439.1 PFAM: band 7 protein; hypothetical protein 1349304 5108696 Pmen_1195 Pseudomonas mendocina ymp hypothetical protein YP_001186692.1 1348162 R 399739 CDS YP_001186693.1 146306228 5106561 1350012..1351613 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; regulator of RNA terminal phosphate cyclase 1351613 5106561 Pmen_1196 Pseudomonas mendocina ymp regulator of RNA terminal phosphate cyclase YP_001186693.1 1350012 D 399739 CDS YP_001186694.1 146306229 5108698 complement(1351607..1353460) 1 NC_009439.1 hypothetical protein 1353460 5108698 Pmen_1197 Pseudomonas mendocina ymp hypothetical protein YP_001186694.1 1351607 R 399739 CDS YP_001186695.1 146306230 5108699 1353604..1353915 1 NC_009439.1 TraR/DksA family transcriptional regulator 1353915 5108699 Pmen_1198 Pseudomonas mendocina ymp TraR/DksA family transcriptional regulator YP_001186695.1 1353604 D 399739 CDS YP_001186696.1 146306231 5108700 complement(1353908..1355548) 1 NC_009439.1 PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; sodium/hydrogen exchanger 1355548 5108700 Pmen_1199 Pseudomonas mendocina ymp sodium/hydrogen exchanger YP_001186696.1 1353908 R 399739 CDS YP_001186697.1 146306232 5108701 1355691..1358180 1 NC_009439.1 ATP-dependent protease-like protein 1358180 5108701 Pmen_1200 Pseudomonas mendocina ymp ATP-dependent protease-like protein YP_001186697.1 1355691 D 399739 CDS YP_001186698.1 146306233 5108702 1358346..1358699 1 NC_009439.1 hypothetical protein 1358699 5108702 Pmen_1201 Pseudomonas mendocina ymp hypothetical protein YP_001186698.1 1358346 D 399739 CDS YP_001186699.1 146306234 5108703 1358784..1359347 1 NC_009439.1 PFAM: Uncharacterized protein UPF0114; hypothetical protein 1359347 5108703 Pmen_1202 Pseudomonas mendocina ymp hypothetical protein YP_001186699.1 1358784 D 399739 CDS YP_001186700.1 146306235 5108704 1359489..1359791 1 NC_009439.1 hypothetical protein 1359791 5108704 Pmen_1203 Pseudomonas mendocina ymp hypothetical protein YP_001186700.1 1359489 D 399739 CDS YP_001186701.1 146306236 5108705 1359803..1361365 1 NC_009439.1 PFAM: deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein 1361365 5108705 Pmen_1204 Pseudomonas mendocina ymp deoxyribodipyrimidine photolyase-like protein YP_001186701.1 1359803 D 399739 CDS YP_001186702.1 146306237 5108706 1361362..1361526 1 NC_009439.1 hypothetical protein 1361526 5108706 Pmen_1205 Pseudomonas mendocina ymp hypothetical protein YP_001186702.1 1361362 D 399739 CDS YP_001186703.1 146306238 5108707 1361597..1362226 1 NC_009439.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1362226 5108707 Pmen_1206 Pseudomonas mendocina ymp FKBP-type peptidylprolyl isomerase YP_001186703.1 1361597 D 399739 CDS YP_001186704.1 146306239 5108708 complement(1362386..1362613) 1 NC_009439.1 hypothetical protein 1362613 5108708 Pmen_1207 Pseudomonas mendocina ymp hypothetical protein YP_001186704.1 1362386 R 399739 CDS YP_001186705.1 146306240 5108709 complement(1362823..1365876) 1 NC_009439.1 MexW; inner membrane protein; member of RND (resistance, nodulation, and division) family; involved in resistance to fluoroquinolones, tetracycline, chloramphenicol, erythromycin, ethidium bromide, and acriflavine; functions along with MexV and OprM; multidrug efflux protein 1365876 5108709 Pmen_1208 Pseudomonas mendocina ymp multidrug efflux protein YP_001186705.1 1362823 R 399739 CDS YP_001186706.1 146306241 5108710 complement(1366076..1367221) 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1367221 5108710 Pmen_1209 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001186706.1 1366076 R 399739 CDS YP_001186707.1 146306242 5108711 complement(1367363..1368985) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1368985 5108711 Pmen_1210 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001186707.1 1367363 R 399739 CDS YP_001186708.1 146306243 5108712 complement(1369297..1370817) 1 NC_009439.1 PFAM: protein of unknown function DUF112, transmembrane; hypothetical protein 1370817 5108712 Pmen_1211 Pseudomonas mendocina ymp hypothetical protein YP_001186708.1 1369297 R 399739 CDS YP_001186709.1 146306244 5108713 complement(1370827..1371339) 1 NC_009439.1 hypothetical protein 1371339 5108713 Pmen_1212 Pseudomonas mendocina ymp hypothetical protein YP_001186709.1 1370827 R 399739 CDS YP_001186710.1 146306245 5108714 complement(1371406..1372383) 1 NC_009439.1 PFAM: Uncharacterized protein UPF0065; hypothetical protein 1372383 5108714 Pmen_1213 Pseudomonas mendocina ymp hypothetical protein YP_001186710.1 1371406 R 399739 CDS YP_001186711.1 146306246 5108715 complement(1372418..1373812) 1 NC_009439.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; D-glucarate dehydratase 1373812 5108715 Pmen_1214 Pseudomonas mendocina ymp D-glucarate dehydratase YP_001186711.1 1372418 R 399739 CDS YP_001186712.1 146306247 5108716 1374322..1375233 1 NC_009439.1 catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase 1375233 5108716 Pmen_1215 Pseudomonas mendocina ymp 5-dehydro-4-deoxyglucarate dehydratase YP_001186712.1 1374322 D 399739 CDS YP_001186713.1 146306248 5108717 1375344..1376693 1 NC_009439.1 PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; D-glucarate dehydratase 1376693 5108717 Pmen_1216 Pseudomonas mendocina ymp D-glucarate dehydratase YP_001186713.1 1375344 D 399739 CDS YP_001186714.1 146306249 5108718 1376876..1378216 1 NC_009439.1 TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; d-galactonate transporter 1378216 5108718 Pmen_1217 Pseudomonas mendocina ymp d-galactonate transporter YP_001186714.1 1376876 D 399739 CDS YP_001186715.1 146306250 5108719 1378239..1379795 1 NC_009439.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; galactarate dehydratase 1379795 5108719 Pmen_1218 Pseudomonas mendocina ymp galactarate dehydratase YP_001186715.1 1378239 D 399739 CDS YP_001186716.1 146306251 5108720 1379809..1380750 1 NC_009439.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1380750 5108720 Pmen_1219 Pseudomonas mendocina ymp NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase YP_001186716.1 1379809 D 399739 CDS YP_001186717.1 146306252 5108721 1381137..1382066 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1382066 5108721 Pmen_1220 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186717.1 1381137 D 399739 CDS YP_001186718.1 146306253 5108722 1382063..1382824 1 NC_009439.1 PFAM: ABC-2 type transporter; ABC transporter 1382824 5108722 Pmen_1221 Pseudomonas mendocina ymp ABC transporter YP_001186718.1 1382063 D 399739 CDS YP_001186719.1 146306254 5108723 complement(1382910..1383302) 1 NC_009439.1 secreted protein-like protein 1383302 5108723 Pmen_1222 Pseudomonas mendocina ymp secreted protein-like protein YP_001186719.1 1382910 R 399739 CDS YP_001186720.1 146306255 5108724 complement(1383390..1385786) 1 NC_009439.1 TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1385786 5108724 Pmen_1223 Pseudomonas mendocina ymp ATP-dependent protease La YP_001186720.1 1383390 R 399739 CDS YP_001186721.1 146306256 5108725 complement(1385884..1386588) 1 NC_009439.1 hypothetical protein 1386588 5108725 Pmen_1224 Pseudomonas mendocina ymp hypothetical protein YP_001186721.1 1385884 R 399739 CDS YP_001186722.1 146306257 5108726 1386863..1387612 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 1387612 5108726 Pmen_1225 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001186722.1 1386863 D 399739 CDS YP_001186723.1 146306258 5108727 1387694..1388434 1 NC_009439.1 hypothetical protein 1388434 5108727 Pmen_1226 Pseudomonas mendocina ymp hypothetical protein YP_001186723.1 1387694 D 399739 CDS YP_001186724.1 146306259 5108728 1388421..1390760 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; diguanylate cyclase/phosphodiesterase 1390760 5108728 Pmen_1227 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001186724.1 1388421 D 399739 CDS YP_001186725.1 146306260 5108729 1390764..1391615 1 NC_009439.1 hypothetical protein 1391615 5108729 Pmen_1228 Pseudomonas mendocina ymp hypothetical protein YP_001186725.1 1390764 D 399739 CDS YP_001186726.1 146306261 5108730 1391618..1392037 1 NC_009439.1 PFAM: globin; globin 1392037 5108730 Pmen_1229 Pseudomonas mendocina ymp globin YP_001186726.1 1391618 D 399739 CDS YP_001186727.1 146306262 5108731 complement(1392047..1392634) 1 NC_009439.1 TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); phosphoheptose isomerase 1392634 5108731 Pmen_1230 Pseudomonas mendocina ymp phosphoheptose isomerase YP_001186727.1 1392047 R 399739 CDS YP_001186728.1 146306263 5108732 complement(1392649..1393938) 1 NC_009439.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 2 1393938 5108732 Pmen_1231 Pseudomonas mendocina ymp putative aminopeptidase 2 YP_001186728.1 1392649 R 399739 CDS YP_001186729.1 146306264 5108733 complement(1394136..1394771) 1 NC_009439.1 PFAM: pseudouridine synthase; ribosomal large subunit pseudouridine synthase A 1394771 5108733 Pmen_1232 Pseudomonas mendocina ymp ribosomal large subunit pseudouridine synthase A YP_001186729.1 1394136 R 399739 CDS YP_001186730.1 146306265 5108734 complement(1395039..1395293) 1 NC_009439.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1395293 minE 5108734 minE Pseudomonas mendocina ymp cell division topological specificity factor MinE YP_001186730.1 1395039 R 399739 CDS YP_001186731.1 146306266 5108735 complement(1395290..1396105) 1 NC_009439.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD 1396105 5108735 Pmen_1234 Pseudomonas mendocina ymp septum site-determining protein MinD YP_001186731.1 1395290 R 399739 CDS YP_001186732.1 146306267 5108736 complement(1396208..1396936) 1 NC_009439.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 1396936 minC 5108736 minC Pseudomonas mendocina ymp septum formation inhibitor YP_001186732.1 1396208 R 399739 CDS YP_001186733.1 146306268 5108737 1397184..1398116 1 NC_009439.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1398116 5108737 Pmen_1236 Pseudomonas mendocina ymp lipid A biosynthesis lauroyl acyltransferase YP_001186733.1 1397184 D 399739 CDS YP_001186734.1 146306269 5108738 1398153..1399334 1 NC_009439.1 PFAM: Patatin; patatin 1399334 5108738 Pmen_1237 Pseudomonas mendocina ymp patatin YP_001186734.1 1398153 D 399739 CDS YP_001186735.1 146306270 5108739 complement(1399429..1400283) 1 NC_009439.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; pirin domain-containing protein 1400283 5108739 Pmen_1238 Pseudomonas mendocina ymp pirin domain-containing protein YP_001186735.1 1399429 R 399739 CDS YP_001186736.1 146306271 5108740 complement(1400396..1401166) 1 NC_009439.1 PFAM: VacJ family lipoprotein; VacJ family lipoprotein 1401166 5108740 Pmen_1239 Pseudomonas mendocina ymp VacJ family lipoprotein YP_001186736.1 1400396 R 399739 CDS YP_001186737.1 146306272 5108741 complement(1401159..1402457) 1 NC_009439.1 putative serine protein kinase PrkA 1402457 5108741 Pmen_1240 Pseudomonas mendocina ymp putative serine protein kinase PrkA YP_001186737.1 1401159 R 399739 CDS YP_001186738.1 146306273 5108742 complement(1402543..1403031) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1403031 5108742 Pmen_1241 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001186738.1 1402543 R 399739 CDS YP_001186739.1 146306274 5109058 complement(1403095..1403316) 1 NC_009439.1 hypothetical protein 1403316 5109058 Pmen_1242 Pseudomonas mendocina ymp hypothetical protein YP_001186739.1 1403095 R 399739 CDS YP_001186740.1 146306275 5109059 1403468..1403839 1 NC_009439.1 hypothetical protein 1403839 5109059 Pmen_1243 Pseudomonas mendocina ymp hypothetical protein YP_001186740.1 1403468 D 399739 CDS YP_001186741.1 146306276 5109060 1404084..1404896 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 1404896 5109060 Pmen_1244 Pseudomonas mendocina ymp short chain dehydrogenase YP_001186741.1 1404084 D 399739 CDS YP_001186742.1 146306277 5109061 1405006..1406157 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1406157 5109061 Pmen_1245 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001186742.1 1405006 D 399739 CDS YP_001186743.1 146306278 5109062 1406232..1406660 1 NC_009439.1 hypothetical protein 1406660 5109062 Pmen_1246 Pseudomonas mendocina ymp hypothetical protein YP_001186743.1 1406232 D 399739 CDS YP_001186744.1 146306279 5109063 1406670..1407002 1 NC_009439.1 PFAM: protein of unknown function UPF0060; hypothetical protein 1407002 5109063 Pmen_1247 Pseudomonas mendocina ymp hypothetical protein YP_001186744.1 1406670 D 399739 CDS YP_001186745.1 146306280 5109064 1407182..1408495 1 NC_009439.1 PFAM: phosphate-selective porin O and P; phosphate-selective porin O and P 1408495 5109064 Pmen_1248 Pseudomonas mendocina ymp phosphate-selective porin O and P YP_001186745.1 1407182 D 399739 CDS YP_001186746.1 146306281 5109065 1408578..1409702 1 NC_009439.1 PFAM: protein of unknown function DUF482; hypothetical protein 1409702 5109065 Pmen_1249 Pseudomonas mendocina ymp hypothetical protein YP_001186746.1 1408578 D 399739 CDS YP_001186747.1 146306282 5109066 1410159..1411649 1 NC_009439.1 TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; sodium/proline symporter 1411649 5109066 Pmen_1250 Pseudomonas mendocina ymp sodium/proline symporter YP_001186747.1 1410159 D 399739 CDS YP_001186748.1 146306283 5109067 1411832..1412050 1 NC_009439.1 hypothetical protein 1412050 5109067 Pmen_1251 Pseudomonas mendocina ymp hypothetical protein YP_001186748.1 1411832 D 399739 CDS YP_001186749.1 146306284 5109068 complement(1412103..1412987) 1 NC_009439.1 alpha/beta fold family hydrolase-like protein 1412987 5109068 Pmen_1252 Pseudomonas mendocina ymp alpha/beta fold family hydrolase-like protein YP_001186749.1 1412103 R 399739 CDS YP_001186750.1 146306285 5109069 complement(1413082..1416180) 1 NC_009439.1 membrane carboxypeptidase 1416180 5109069 Pmen_1253 Pseudomonas mendocina ymp membrane carboxypeptidase YP_001186750.1 1413082 R 399739 CDS YP_001186751.1 146306286 5109070 1416381..1417061 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 1417061 5109070 Pmen_1254 Pseudomonas mendocina ymp type 12 methyltransferase YP_001186751.1 1416381 D 399739 CDS YP_001186752.1 146306287 5109071 1417064..1417498 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1417498 5109071 Pmen_1255 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001186752.1 1417064 D 399739 CDS YP_001186753.1 146306288 5109072 1417485..1418306 1 NC_009439.1 PFAM: aldo/keto reductase; aldo/keto reductase 1418306 5109072 Pmen_1256 Pseudomonas mendocina ymp aldo/keto reductase YP_001186753.1 1417485 D 399739 CDS YP_001186754.1 146306289 5109073 complement(1418347..1419306) 1 NC_009439.1 hypothetical protein 1419306 5109073 Pmen_1257 Pseudomonas mendocina ymp hypothetical protein YP_001186754.1 1418347 R 399739 CDS YP_001186755.1 146306290 5109074 complement(1419327..1421042) 1 NC_009439.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1421042 5109074 Pmen_1258 Pseudomonas mendocina ymp prolyl-tRNA synthetase YP_001186755.1 1419327 R 399739 CDS YP_001186756.1 146306291 5109075 1421161..1421574 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1421574 5109075 Pmen_1259 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001186756.1 1421161 D 399739 CDS YP_001186757.1 146306292 5109076 complement(1421654..1422931) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 1422931 5109076 Pmen_1260 Pseudomonas mendocina ymp outer membrane porin YP_001186757.1 1421654 R 399739 CDS YP_001186758.1 146306293 5109077 1423580..1424011 1 NC_009439.1 PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein 1424011 5109077 Pmen_1261 Pseudomonas mendocina ymp histidine triad (HIT) protein YP_001186758.1 1423580 D 399739 CDS YP_001186759.1 146306294 5109078 1424008..1424214 1 NC_009439.1 PFAM: SlyX family protein; hypothetical protein 1424214 5109078 Pmen_1262 Pseudomonas mendocina ymp hypothetical protein YP_001186759.1 1424008 D 399739 CDS YP_001186760.1 146306295 5109079 complement(1424258..1424875) 1 NC_009439.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein 1424875 5109079 Pmen_1263 Pseudomonas mendocina ymp cold-shock DNA-binding protein family protein YP_001186760.1 1424258 R 399739 CDS YP_001186761.1 146306296 5109080 complement(1425048..1426115) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 1426115 5109080 Pmen_1264 Pseudomonas mendocina ymp diguanylate cyclase YP_001186761.1 1425048 R 399739 CDS YP_001186762.1 146306297 5109081 complement(1426213..1426683) 1 NC_009439.1 PFAM: Ferritin, Dps family protein; Ferritin, Dps family protein 1426683 5109081 Pmen_1265 Pseudomonas mendocina ymp Ferritin, Dps family protein YP_001186762.1 1426213 R 399739 CDS YP_001186763.1 146306298 5109082 complement(1426798..1427634) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1427634 5109082 Pmen_1266 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001186763.1 1426798 R 399739 CDS YP_001186764.1 146306299 5109083 complement(1427706..1428824) 1 NC_009439.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; Hpt domain protein; metal dependent phosphohydrolase 1428824 5109083 Pmen_1267 Pseudomonas mendocina ymp metal dependent phosphohydrolase YP_001186764.1 1427706 R 399739 CDS YP_001186765.1 146306300 5109084 1429024..1430799 1 NC_009439.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1430799 aspS 5109084 aspS Pseudomonas mendocina ymp aspartyl-tRNA synthetase YP_001186765.1 1429024 D 399739 CDS YP_001186766.1 146306301 5109085 1430905..1431654 1 NC_009439.1 PFAM: protein of unknown function DUF28; hypothetical protein 1431654 5109085 Pmen_1269 Pseudomonas mendocina ymp hypothetical protein YP_001186766.1 1430905 D 399739 CDS YP_001186767.1 146306302 5109086 1431808..1432332 1 NC_009439.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1432332 ruvC 5109086 ruvC Pseudomonas mendocina ymp Holliday junction resolvase YP_001186767.1 1431808 D 399739 CDS YP_001186768.1 146306303 5109087 1432351..1432959 1 NC_009439.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1432959 ruvA 5109087 ruvA Pseudomonas mendocina ymp Holliday junction DNA helicase RuvA YP_001186768.1 1432351 D 399739 CDS YP_001186769.1 146306304 5109088 1432973..1434025 1 NC_009439.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1434025 ruvB 5109088 ruvB Pseudomonas mendocina ymp Holliday junction DNA helicase RuvB YP_001186769.1 1432973 D 399739 CDS YP_001186770.1 146306305 5109089 1434079..1434531 1 NC_009439.1 TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; 4-hydroxybenzoyl-CoA thioesterase 1434531 5109089 Pmen_1273 Pseudomonas mendocina ymp 4-hydroxybenzoyl-CoA thioesterase YP_001186770.1 1434079 D 399739 CDS YP_001186771.1 146306306 5109090 1434534..1435229 1 NC_009439.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1435229 5109090 Pmen_1274 Pseudomonas mendocina ymp MotA/TolQ/ExbB proton channel YP_001186771.1 1434534 D 399739 CDS YP_001186772.1 146306307 5109091 1435257..1435709 1 NC_009439.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1435709 5109091 Pmen_1275 Pseudomonas mendocina ymp biopolymer transport protein ExbD/TolR YP_001186772.1 1435257 D 399739 CDS YP_001186773.1 146306308 5109092 1435709..1436689 1 NC_009439.1 TIGRFAM: TonB family protein; PFAM: TolA family protein; TonB family protein 1436689 5109092 Pmen_1276 Pseudomonas mendocina ymp TonB family protein YP_001186773.1 1435709 D 399739 CDS YP_001186774.1 146306309 5109093 1436695..1437993 1 NC_009439.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1437993 tolB 5109093 tolB Pseudomonas mendocina ymp translocation protein TolB YP_001186774.1 1436695 D 399739 CDS YP_001186775.1 146306310 5109094 1438046..1438546 1 NC_009439.1 TIGRFAM: OmpA domain protein; PFAM: OmpA/MotB domain protein; OmpA domain-containing protein 1438546 5109094 Pmen_1278 Pseudomonas mendocina ymp OmpA domain-containing protein YP_001186775.1 1438046 D 399739 CDS YP_001186776.1 146306311 5109095 1438553..1439365 1 NC_009439.1 PFAM: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 1439365 5109095 Pmen_1279 Pseudomonas mendocina ymp hypothetical protein YP_001186776.1 1438553 D 399739 CDS YP_001186777.1 146306312 5109096 1439548..1440228 1 NC_009439.1 PFAM: Radical SAM domain protein; radical SAM domain-containing protein 1440228 5109096 Pmen_1280 Pseudomonas mendocina ymp radical SAM domain-containing protein YP_001186777.1 1439548 D 399739 CDS YP_001186778.1 146306313 5109097 1440231..1440905 1 NC_009439.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; exsB protein 1440905 5109097 Pmen_1281 Pseudomonas mendocina ymp exsB protein YP_001186778.1 1440231 D 399739 CDS YP_001186779.1 146306314 5106562 1441177..1442235 1 NC_009439.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1442235 5106562 Pmen_1282 Pseudomonas mendocina ymp quinolinate synthetase YP_001186779.1 1441177 D 399739 CDS YP_001186780.1 146306315 5109099 complement(1442365..1443438) 1 NC_009439.1 PFAM: conserved hypothetical protein 730; hypothetical protein 1443438 5109099 Pmen_1283 Pseudomonas mendocina ymp hypothetical protein YP_001186780.1 1442365 R 399739 CDS YP_001186781.1 146306316 5109100 complement(1443571..1444974) 1 NC_009439.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 1444974 5109100 Pmen_1284 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001186781.1 1443571 R 399739 CDS YP_001186782.1 146306317 5109101 1445100..1447502 1 NC_009439.1 PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase 1447502 5109101 Pmen_1285 Pseudomonas mendocina ymp D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase YP_001186782.1 1445100 D 399739 CDS YP_001186783.1 146306318 5109102 1447540..1447734 1 NC_009439.1 hypothetical protein 1447734 5109102 Pmen_1286 Pseudomonas mendocina ymp hypothetical protein YP_001186783.1 1447540 D 399739 CDS YP_001186784.1 146306319 5109103 complement(1447748..1448149) 1 NC_009439.1 hypothetical protein 1448149 5109103 Pmen_1287 Pseudomonas mendocina ymp hypothetical protein YP_001186784.1 1447748 R 399739 CDS YP_001186785.1 146306320 5109104 1448492..1450189 1 NC_009439.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 1450189 5109104 Pmen_1288 Pseudomonas mendocina ymp aromatic hydrocarbon degradation membrane protein YP_001186785.1 1448492 D 399739 CDS YP_001186786.1 146306321 5109105 1450249..1450983 1 NC_009439.1 PFAM: DTW domain containing protein; DTW domain-containing protein 1450983 5109105 Pmen_1289 Pseudomonas mendocina ymp DTW domain-containing protein YP_001186786.1 1450249 D 399739 CDS YP_001186787.1 146306322 5109106 complement(1450943..1451914) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1451914 5109106 Pmen_1290 Pseudomonas mendocina ymp hypothetical protein YP_001186787.1 1450943 R 399739 CDS YP_001186788.1 146306323 5109107 1452069..1452716 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator 1452716 5109107 Pmen_1291 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001186788.1 1452069 D 399739 CDS YP_001186789.1 146306324 5109108 complement(1452753..1453679) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1453679 5109108 Pmen_1292 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186789.1 1452753 R 399739 CDS YP_001186790.1 146306325 5109109 1453744..1454571 1 NC_009439.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 1454571 5109109 Pmen_1293 Pseudomonas mendocina ymp oxidoreductase FAD/NAD(P)-binding subunit YP_001186790.1 1453744 D 399739 CDS YP_001186791.1 146306326 5109110 complement(1454708..1455262) 1 NC_009439.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 1455262 5109110 Pmen_1294 Pseudomonas mendocina ymp cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001186791.1 1454708 R 399739 CDS YP_001186792.1 146306327 5109111 complement(1455268..1456065) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; 3-oxoadipate enol-lactonase 1456065 5109111 Pmen_1295 Pseudomonas mendocina ymp 3-oxoadipate enol-lactonase YP_001186792.1 1455268 R 399739 CDS YP_001186793.1 146306328 5109112 complement(1456076..1457002) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1457002 5109112 Pmen_1296 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186793.1 1456076 R 399739 CDS YP_001186794.1 146306329 5109113 1457077..1457391 1 NC_009439.1 hypothetical protein 1457391 5109113 Pmen_1297 Pseudomonas mendocina ymp hypothetical protein YP_001186794.1 1457077 D 399739 CDS YP_001186795.1 146306330 5109114 1457527..1458126 1 NC_009439.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) 1458126 5109114 Pmen_1298 Pseudomonas mendocina ymp NAD(P)H dehydrogenase (quinone) YP_001186795.1 1457527 D 399739 CDS YP_001186796.1 146306331 5109115 1458345..1459112 1 NC_009439.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1459112 5109115 Pmen_1299 Pseudomonas mendocina ymp MotA/TolQ/ExbB proton channel YP_001186796.1 1458345 D 399739 CDS YP_001186797.1 146306332 5109116 1459122..1460012 1 NC_009439.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar motor protein MotB 1460012 motB 5109116 motB Pseudomonas mendocina ymp flagellar motor protein MotB YP_001186797.1 1459122 D 399739 CDS YP_001186798.1 146306333 5109117 1460074..1460946 1 NC_009439.1 TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6, transmembrane; carboxylate/amino acid/amine transporter 1460946 5109117 Pmen_1301 Pseudomonas mendocina ymp carboxylate/amino acid/amine transporter YP_001186798.1 1460074 D 399739 CDS YP_001186799.1 146306334 5109118 1460946..1461839 1 NC_009439.1 TIGRFAM: RarD protein, DMT superfamily transporter; transporter DMT superfamily protein 1461839 5109118 Pmen_1302 Pseudomonas mendocina ymp transporter DMT superfamily protein YP_001186799.1 1460946 D 399739 CDS YP_001186800.1 146306335 5109119 complement(1461840..1462418) 1 NC_009439.1 PFAM: bifunctional deaminase-reductase domain protein; deaminase-reductase domain-containing protein 1462418 5109119 Pmen_1303 Pseudomonas mendocina ymp deaminase-reductase domain-containing protein YP_001186800.1 1461840 R 399739 CDS YP_001186801.1 146306336 5109120 complement(1462513..1462920) 1 NC_009439.1 hypothetical protein 1462920 5109120 Pmen_1304 Pseudomonas mendocina ymp hypothetical protein YP_001186801.1 1462513 R 399739 CDS YP_001186802.1 146306337 5109121 complement(1462977..1464278) 1 NC_009439.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1464278 5109121 Pmen_1305 Pseudomonas mendocina ymp mechanosensitive ion channel protein MscS YP_001186802.1 1462977 R 399739 CDS YP_001186803.1 146306338 5109122 1464441..1465766 1 NC_009439.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1465766 5109122 Pmen_1306 Pseudomonas mendocina ymp DEAD/DEAH box helicase YP_001186803.1 1464441 D 399739 CDS YP_001186804.1 146306339 5109123 complement(1465920..1467755) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1467755 5109123 Pmen_1307 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186804.1 1465920 R 399739 CDS YP_001186805.1 146306340 5109124 complement(1467799..1468863) 1 NC_009439.1 PFAM: membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 1468863 5109124 Pmen_1308 Pseudomonas mendocina ymp membrane-bound metal-dependent hydrolase YP_001186805.1 1467799 R 399739 CDS YP_001186806.1 146306341 5109125 1468992..1469405 1 NC_009439.1 PFAM: Class I peptide chain release factor; peptidyl-tRNA hydrolase domain-containing protein 1469405 5109125 Pmen_1309 Pseudomonas mendocina ymp peptidyl-tRNA hydrolase domain-containing protein YP_001186806.1 1468992 D 399739 CDS YP_001186807.1 146306342 5109126 complement(1469509..1469973) 1 NC_009439.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1469973 mgsA 5109126 mgsA Pseudomonas mendocina ymp methylglyoxal synthase YP_001186807.1 1469509 R 399739 CDS YP_001186808.1 146306343 5109127 complement(1469988..1470989) 1 NC_009439.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1470989 5109127 Pmen_1311 Pseudomonas mendocina ymp glyceraldehyde-3-phosphate dehydrogenase YP_001186808.1 1469988 R 399739 CDS YP_001186809.1 146306344 5109128 1471118..1472941 1 NC_009439.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1472941 5109128 Pmen_1312 Pseudomonas mendocina ymp phosphogluconate dehydratase YP_001186809.1 1471118 D 399739 CDS YP_001186810.1 146306345 5109129 complement(1473030..1473995) 1 NC_009439.1 Required for efficient pilin antigenic variation; recombination associated protein 1473995 rdgC 5109129 rdgC Pseudomonas mendocina ymp recombination associated protein YP_001186810.1 1473030 R 399739 CDS YP_001186811.1 146306346 5106564 1474610..1475320 1 NC_009439.1 PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 1475320 5106564 Pmen_1314 Pseudomonas mendocina ymp FKBP-type peptidylprolyl isomerase YP_001186811.1 1474610 D 399739 CDS YP_001186812.1 146306347 5109131 1475658..1476101 1 NC_009439.1 PFAM: protein of unknown function DUF1232; hypothetical protein 1476101 5109131 Pmen_1315 Pseudomonas mendocina ymp hypothetical protein YP_001186812.1 1475658 D 399739 CDS YP_001186813.1 146306348 5109132 complement(1476052..1476822) 1 NC_009439.1 hypothetical protein 1476822 5109132 Pmen_1316 Pseudomonas mendocina ymp hypothetical protein YP_001186813.1 1476052 R 399739 CDS YP_001186814.1 146306349 5109133 1477009..1477329 1 NC_009439.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1477329 5109133 Pmen_1317 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001186814.1 1477009 D 399739 CDS YP_001186815.1 146306350 5109134 1477332..1477691 1 NC_009439.1 hypothetical protein 1477691 5109134 Pmen_1318 Pseudomonas mendocina ymp hypothetical protein YP_001186815.1 1477332 D 399739 CDS YP_001186816.1 146306351 5109135 1477684..1478169 1 NC_009439.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 1478169 5109135 Pmen_1319 Pseudomonas mendocina ymp Sel1 domain-containing protein YP_001186816.1 1477684 D 399739 CDS YP_001186817.1 146306352 5109136 complement(1478158..1479912) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 1479912 5109136 Pmen_1320 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001186817.1 1478158 R 399739 CDS YP_001186818.1 146306353 5109374 complement(1480016..1482130) 1 NC_009439.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1482130 5109374 Pmen_1321 Pseudomonas mendocina ymp carboxyl-terminal protease YP_001186818.1 1480016 R 399739 CDS YP_001186819.1 146306354 5109375 1482226..1483188 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 1483188 5109375 Pmen_1322 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001186819.1 1482226 D 399739 CDS YP_001186820.1 146306355 5109376 1483344..1483907 1 NC_009439.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxiredoxin 1483907 5109376 Pmen_1323 Pseudomonas mendocina ymp peroxiredoxin YP_001186820.1 1483344 D 399739 CDS YP_001186821.1 146306356 5109377 1484061..1485617 1 NC_009439.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1485617 5109377 Pmen_1324 Pseudomonas mendocina ymp FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001186821.1 1484061 D 399739 CDS YP_001186822.1 146306357 5109378 complement(1485766..1486608) 1 NC_009439.1 PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; hypothetical protein 1486608 5109378 Pmen_1325 Pseudomonas mendocina ymp hypothetical protein YP_001186822.1 1485766 R 399739 CDS YP_001186823.1 146306358 5109379 1486752..1487606 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1487606 5109379 Pmen_1326 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186823.1 1486752 D 399739 CDS YP_001186824.1 146306359 5109380 complement(1487697..1488350) 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD family hydrolase 1488350 5109380 Pmen_1327 Pseudomonas mendocina ymp HAD family hydrolase YP_001186824.1 1487697 R 399739 CDS YP_001186825.1 146306360 5109381 complement(1488350..1489336) 1 NC_009439.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 1489336 5109381 Pmen_1328 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186825.1 1488350 R 399739 CDS YP_001186826.1 146306361 5109382 complement(1489333..1490127) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1490127 5109382 Pmen_1329 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001186826.1 1489333 R 399739 CDS YP_001186827.1 146306362 5109383 complement(1490114..1490956) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1490956 5109383 Pmen_1330 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001186827.1 1490114 R 399739 CDS YP_001186828.1 146306363 5109384 complement(1490953..1491828) 1 NC_009439.1 hypothetical protein 1491828 5109384 Pmen_1331 Pseudomonas mendocina ymp hypothetical protein YP_001186828.1 1490953 R 399739 CDS YP_001186829.1 146306364 5109385 complement(1491861..1492919) 1 NC_009439.1 Fe3+ ABC transporter periplasmic component-like protein 1492919 5109385 Pmen_1332 Pseudomonas mendocina ymp Fe3+ ABC transporter periplasmic component-like protein YP_001186829.1 1491861 R 399739 CDS YP_001186830.1 146306365 5109386 1493235..1493951 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 1493951 5109386 Pmen_1333 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001186830.1 1493235 D 399739 CDS YP_001186831.1 146306366 5109387 1494140..1494514 1 NC_009439.1 PFAM: DGPFAETKE family protein; DGPFAETKE family protein 1494514 5109387 Pmen_1334 Pseudomonas mendocina ymp DGPFAETKE family protein YP_001186831.1 1494140 D 399739 CDS YP_001186832.1 146306367 5109388 1494548..1495330 1 NC_009439.1 PFAM: protein of unknown function DUF899, thioredoxin family protein; hypothetical protein 1495330 5109388 Pmen_1335 Pseudomonas mendocina ymp hypothetical protein YP_001186832.1 1494548 D 399739 CDS YP_001186833.1 146306368 5109389 1495496..1495918 1 NC_009439.1 ketosteroid isomerase-like protein 1495918 5109389 Pmen_1336 Pseudomonas mendocina ymp ketosteroid isomerase-like protein YP_001186833.1 1495496 D 399739 CDS YP_001186834.1 146306369 5109390 complement(1495934..1496479) 1 NC_009439.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 1496479 5109390 Pmen_1337 Pseudomonas mendocina ymp Sel1 domain-containing protein YP_001186834.1 1495934 R 399739 CDS YP_001186835.1 146306370 5109391 1496630..1497757 1 NC_009439.1 PFAM: peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 1497757 5109391 Pmen_1338 Pseudomonas mendocina ymp peptidase M14, carboxypeptidase A YP_001186835.1 1496630 D 399739 CDS YP_001186836.1 146306371 5109392 complement(1498025..1499293) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 1499293 5109392 Pmen_1339 Pseudomonas mendocina ymp outer membrane porin YP_001186836.1 1498025 R 399739 CDS YP_001186837.1 146306372 5109393 1499760..1500113 1 NC_009439.1 5-carboxymethyl-2-hydroxymuconate delta-isomerase 1500113 5109393 Pmen_1340 Pseudomonas mendocina ymp 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_001186837.1 1499760 D 399739 CDS YP_001186838.1 146306373 5109394 complement(1500110..1500556) 1 NC_009439.1 TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein, MerR; Redox-sensitive transcriptional activator SoxR; MerR family transcriptional regulator 1500556 5109394 Pmen_1341 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001186838.1 1500110 R 399739 CDS YP_001186839.1 146306374 5109395 1500635..1501213 1 NC_009439.1 PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1501213 5109395 Pmen_1342 Pseudomonas mendocina ymp NADPH-dependent FMN reductase YP_001186839.1 1500635 D 399739 CDS YP_001186840.1 146306375 5109396 complement(1501435..1502559) 1 NC_009439.1 TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein 1502559 5109396 Pmen_1343 Pseudomonas mendocina ymp glycine cleavage system T protein YP_001186840.1 1501435 R 399739 CDS YP_001186841.1 146306376 5109397 complement(1502629..1503882) 1 NC_009439.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1503882 5109397 Pmen_1344 Pseudomonas mendocina ymp serine hydroxymethyltransferase YP_001186841.1 1502629 R 399739 CDS YP_001186842.1 146306377 5109398 complement(1504068..1506920) 1 NC_009439.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1506920 5109398 Pmen_1345 Pseudomonas mendocina ymp glycine dehydrogenase YP_001186842.1 1504068 R 399739 CDS YP_001186843.1 146306378 5109399 complement(1506930..1507313) 1 NC_009439.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1507313 5109399 Pmen_1346 Pseudomonas mendocina ymp glycine cleavage system protein H YP_001186843.1 1506930 R 399739 CDS YP_001186844.1 146306379 5109400 1507646..1508197 1 NC_009439.1 PFAM: superoxide dismutase, copper/zinc binding; superoxide dismutase, copper/zinc binding 1508197 5109400 Pmen_1347 Pseudomonas mendocina ymp superoxide dismutase, copper/zinc binding YP_001186844.1 1507646 D 399739 CDS YP_001186845.1 146306380 5109401 complement(1508296..1509816) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; putative PAS/PAC sensor protein 1509816 5109401 Pmen_1348 Pseudomonas mendocina ymp putative PAS/PAC sensor protein YP_001186845.1 1508296 R 399739 CDS YP_001186846.1 146306381 5109402 1509890..1510096 1 NC_009439.1 hypothetical protein 1510096 5109402 Pmen_1349 Pseudomonas mendocina ymp hypothetical protein YP_001186846.1 1509890 D 399739 CDS YP_001186847.1 146306382 5109403 complement(1510375..1511073) 1 NC_009439.1 PFAM: Endonuclease I; deoxyribonuclease I 1511073 5109403 Pmen_1350 Pseudomonas mendocina ymp deoxyribonuclease I YP_001186847.1 1510375 R 399739 CDS YP_001186848.1 146306383 5109404 complement(1511215..1511868) 1 NC_009439.1 protein-disulfide isomerase-like protein 1511868 5109404 Pmen_1351 Pseudomonas mendocina ymp protein-disulfide isomerase-like protein YP_001186848.1 1511215 R 399739 CDS YP_001186849.1 146306384 5109405 complement(1511975..1513105) 1 NC_009439.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 1513105 5109405 Pmen_1352 Pseudomonas mendocina ymp mechanosensitive ion channel protein MscS YP_001186849.1 1511975 R 399739 CDS YP_001186850.1 146306385 5109406 complement(1513295..1514938) 1 NC_009439.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1514938 5109406 Pmen_1353 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001186850.1 1513295 R 399739 CDS YP_001186851.1 146306386 5106565 complement(1515504..1516391) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1516391 5106565 Pmen_1354 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001186851.1 1515504 R 399739 CDS YP_001186852.1 146306387 5109408 complement(1516783..1517475) 1 NC_009439.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal small subunit pseudouridine synthase A 1517475 5109408 Pmen_1355 Pseudomonas mendocina ymp ribosomal small subunit pseudouridine synthase A YP_001186852.1 1516783 R 399739 CDS YP_001186853.1 146306388 5109409 complement(1517479..1517685) 1 NC_009439.1 hypothetical protein 1517685 5109409 Pmen_1356 Pseudomonas mendocina ymp hypothetical protein YP_001186853.1 1517479 R 399739 CDS YP_001186854.1 146306389 5109410 complement(1517685..1519211) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 1519211 5109410 Pmen_1357 Pseudomonas mendocina ymp diguanylate cyclase YP_001186854.1 1517685 R 399739 CDS YP_001186855.1 146306390 5109411 complement(1519304..1522999) 1 NC_009439.1 TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin carboxylase 1522999 5109411 Pmen_1358 Pseudomonas mendocina ymp biotin carboxylase YP_001186855.1 1519304 R 399739 CDS YP_001186856.1 146306391 5109412 complement(1523166..1523801) 1 NC_009439.1 hypothetical protein 1523801 5109412 Pmen_1359 Pseudomonas mendocina ymp hypothetical protein YP_001186856.1 1523166 R 399739 CDS YP_001186857.1 146306392 5109413 complement(1523812..1524540) 1 NC_009439.1 hypothetical protein 1524540 5109413 Pmen_1360 Pseudomonas mendocina ymp hypothetical protein YP_001186857.1 1523812 R 399739 CDS YP_001186858.1 146306393 5109414 complement(1524621..1525688) 1 NC_009439.1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 1525688 5109414 Pmen_1361 Pseudomonas mendocina ymp nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_001186858.1 1524621 R 399739 CDS YP_001186859.1 146306394 5109415 1526189..1527214 1 NC_009439.1 PFAM: 2OG-Fe(II) oxygenase; 2OG-Fe(II) oxygenase 1527214 5109415 Pmen_1362 Pseudomonas mendocina ymp 2OG-Fe(II) oxygenase YP_001186859.1 1526189 D 399739 CDS YP_001186860.1 146306395 5109416 1527211..1528143 1 NC_009439.1 hypothetical protein 1528143 5109416 Pmen_1363 Pseudomonas mendocina ymp hypothetical protein YP_001186860.1 1527211 D 399739 CDS YP_001186861.1 146306396 5109417 complement(1528307..1529176) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1529176 5109417 Pmen_1364 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186861.1 1528307 R 399739 CDS YP_001186862.1 146306397 5109418 complement(1529173..1529988) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1529988 5109418 Pmen_1365 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001186862.1 1529173 R 399739 CDS YP_001186863.1 146306398 5109419 complement(1530449..1531510) 1 NC_009439.1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 1531510 5109419 Pmen_1366 Pseudomonas mendocina ymp nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_001186863.1 1530449 R 399739 CDS YP_001186864.1 146306399 5109420 1532300..1532749 1 NC_009439.1 hypothetical protein 1532749 5109420 Pmen_1367 Pseudomonas mendocina ymp hypothetical protein YP_001186864.1 1532300 D 399739 CDS YP_001186865.1 146306400 5109421 complement(1532753..1533664) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1533664 5109421 Pmen_1368 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186865.1 1532753 R 399739 CDS YP_001186866.1 146306401 5109422 1533762..1535549 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1535549 5109422 Pmen_1369 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001186866.1 1533762 D 399739 CDS YP_001186867.1 146306402 5109423 1535628..1535873 1 NC_009439.1 PFAM: protein of unknown function DUF1145; hypothetical protein 1535873 5109423 Pmen_1370 Pseudomonas mendocina ymp hypothetical protein YP_001186867.1 1535628 D 399739 CDS YP_001186868.1 146306403 5109424 complement(1536233..1537117) 1 NC_009439.1 TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1537117 5109424 Pmen_1371 Pseudomonas mendocina ymp 3-hydroxyisobutyrate dehydrogenase YP_001186868.1 1536233 R 399739 CDS YP_001186869.1 146306404 5109425 complement(1537146..1537982) 1 NC_009439.1 PEP phosphonomutase-like protein 1537982 5109425 Pmen_1372 Pseudomonas mendocina ymp PEP phosphonomutase-like protein YP_001186869.1 1537146 R 399739 CDS YP_001186870.1 146306405 5109426 complement(1538114..1539217) 1 NC_009439.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1539217 5109426 Pmen_1373 Pseudomonas mendocina ymp enoyl-CoA hydratase/isomerase YP_001186870.1 1538114 R 399739 CDS YP_001186871.1 146306406 5109427 complement(1539333..1540151) 1 NC_009439.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1540151 5109427 Pmen_1374 Pseudomonas mendocina ymp enoyl-CoA hydratase YP_001186871.1 1539333 R 399739 CDS YP_001186872.1 146306407 5109428 complement(1540246..1541409) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1541409 5109428 Pmen_1375 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001186872.1 1540246 R 399739 CDS YP_001186873.1 146306408 5109429 complement(1541416..1542663) 1 NC_009439.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 1542663 5109429 Pmen_1376 Pseudomonas mendocina ymp extracellular ligand-binding receptor YP_001186873.1 1541416 R 399739 CDS YP_001186874.1 146306409 5109430 complement(1542761..1544257) 1 NC_009439.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 1544257 5109430 Pmen_1377 Pseudomonas mendocina ymp methylmalonate-semialdehyde dehydrogenase YP_001186874.1 1542761 R 399739 CDS YP_001186875.1 146306410 5109431 1544381..1545262 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; AraC family transcriptional regulator 1545262 5109431 Pmen_1378 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001186875.1 1544381 D 399739 CDS YP_001186876.1 146306411 5109432 complement(1545274..1545774) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1545774 5109432 Pmen_1379 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001186876.1 1545274 R 399739 CDS YP_001186877.1 146306412 5109433 complement(1545785..1546597) 1 NC_009439.1 PFAM: HDOD; putative signal transduction protein 1546597 5109433 Pmen_1380 Pseudomonas mendocina ymp putative signal transduction protein YP_001186877.1 1545785 R 399739 CDS YP_001186878.1 146306413 5109434 1546735..1547424 1 NC_009439.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1547424 5109434 Pmen_1381 Pseudomonas mendocina ymp uracil-DNA glycosylase YP_001186878.1 1546735 D 399739 CDS YP_001186879.1 146306414 5109435 complement(1547474..1548334) 1 NC_009439.1 hypothetical protein 1548334 5109435 Pmen_1382 Pseudomonas mendocina ymp hypothetical protein YP_001186879.1 1547474 R 399739 CDS YP_001186880.1 146306415 5109436 complement(1548527..1549228) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1549228 5109436 Pmen_1383 Pseudomonas mendocina ymp ABC transporter-like protein YP_001186880.1 1548527 R 399739 CDS YP_001186881.1 146306416 5109437 complement(1549232..1549999) 1 NC_009439.1 Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter ATP-binding subunit 1549999 livG 5109437 livG Pseudomonas mendocina ymp leucine/isoleucine/valine transporter ATP-binding subunit YP_001186881.1 1549232 R 399739 CDS YP_001186882.1 146306417 5109438 complement(1549996..1551267) 1 NC_009439.1 Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine; leucine/isoleucine/valine transporter permease 1551267 livM 5109438 livM Pseudomonas mendocina ymp leucine/isoleucine/valine transporter permease YP_001186882.1 1549996 R 399739 CDS YP_001186883.1 146306418 5109439 complement(1551264..1552187) 1 NC_009439.1 PFAM: inner-membrane translocator; inner-membrane translocator 1552187 5109439 Pmen_1386 Pseudomonas mendocina ymp inner-membrane translocator YP_001186883.1 1551264 R 399739 CDS YP_001186884.1 146306419 5109440 complement(1552305..1553426) 1 NC_009439.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 1553426 5109440 Pmen_1387 Pseudomonas mendocina ymp extracellular ligand-binding receptor YP_001186884.1 1552305 R 399739 CDS YP_001186885.1 146306420 5109441 1553721..1554038 1 NC_009439.1 hypothetical protein 1554038 5109441 Pmen_1388 Pseudomonas mendocina ymp hypothetical protein YP_001186885.1 1553721 D 399739 CDS YP_001186886.1 146306421 5109442 1554131..1554499 1 NC_009439.1 hypothetical protein 1554499 5109442 Pmen_1389 Pseudomonas mendocina ymp hypothetical protein YP_001186886.1 1554131 D 399739 CDS YP_001186887.1 146306422 5109443 complement(1554572..1554790) 1 NC_009439.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; BFD/(2Fe-2S)-binding domain-containing protein 1554790 5109443 Pmen_1390 Pseudomonas mendocina ymp BFD/(2Fe-2S)-binding domain-containing protein YP_001186887.1 1554572 R 399739 CDS YP_001186888.1 146306423 5109444 complement(1554961..1555635) 1 NC_009439.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1555635 5109444 Pmen_1391 Pseudomonas mendocina ymp ribonuclease T YP_001186888.1 1554961 R 399739 CDS YP_001186889.1 146306424 5109445 complement(1555632..1556678) 1 NC_009439.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1556678 5109445 Pmen_1392 Pseudomonas mendocina ymp dihydroorotase YP_001186889.1 1555632 R 399739 CDS YP_001186890.1 146306425 5109446 1556872..1557819 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1557819 5109446 Pmen_1393 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001186890.1 1556872 D 399739 CDS YP_001186891.1 146306426 5109447 1557935..1559152 1 NC_009439.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 1559152 5109447 Pmen_1394 Pseudomonas mendocina ymp argininosuccinate synthase YP_001186891.1 1557935 D 399739 CDS YP_001186892.1 146306427 5109448 1559224..1559616 1 NC_009439.1 TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 1559616 5109448 Pmen_1395 Pseudomonas mendocina ymp lactoylglutathione lyase YP_001186892.1 1559224 D 399739 CDS YP_001186893.1 146306428 5109449 1559686..1560756 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; diguanylate cyclase 1560756 5109449 Pmen_1396 Pseudomonas mendocina ymp diguanylate cyclase YP_001186893.1 1559686 D 399739 CDS YP_001186894.1 146306429 5109450 complement(1560801..1560980) 1 NC_009439.1 hypothetical protein 1560980 5109450 Pmen_1397 Pseudomonas mendocina ymp hypothetical protein YP_001186894.1 1560801 R 399739 CDS YP_001186895.1 146306430 5109451 complement(1561092..1561730) 1 NC_009439.1 TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 1561730 5109451 Pmen_1398 Pseudomonas mendocina ymp DNA-(apurinic or apyrimidinic site) lyase / endonuclease III YP_001186895.1 1561092 R 399739 CDS YP_001186896.1 146306431 5109452 complement(1561727..1562434) 1 NC_009439.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1562434 5109452 Pmen_1399 Pseudomonas mendocina ymp electron transport complex protein RsxE YP_001186896.1 1561727 R 399739 CDS YP_001186897.1 146306432 5109689 complement(1562431..1563066) 1 NC_009439.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; RnfABCDGE type electron transport complex subunit G 1563066 5109689 Pmen_1400 Pseudomonas mendocina ymp RnfABCDGE type electron transport complex subunit G YP_001186897.1 1562431 R 399739 CDS YP_001186898.1 146306433 5109690 complement(1563069..1564100) 1 NC_009439.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; RnfABCDGE type electron transport complex subunit D 1564100 5109690 Pmen_1401 Pseudomonas mendocina ymp RnfABCDGE type electron transport complex subunit D YP_001186898.1 1563069 R 399739 CDS YP_001186899.1 146306434 5109691 complement(1564240..1567074) 1 NC_009439.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1567074 5109691 Pmen_1402 Pseudomonas mendocina ymp electron transport complex protein RnfC YP_001186899.1 1564240 R 399739 CDS YP_001186900.1 146306435 5109692 complement(1567071..1567646) 1 NC_009439.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1567646 5109692 Pmen_1403 Pseudomonas mendocina ymp electron transport complex protein RnfB YP_001186900.1 1567071 R 399739 CDS YP_001186901.1 146306436 5109693 complement(1567643..1568227) 1 NC_009439.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; Na(+)-translocating NADH-quinone reductase subunit E 1568227 5109693 Pmen_1404 Pseudomonas mendocina ymp Na(+)-translocating NADH-quinone reductase subunit E YP_001186901.1 1567643 R 399739 CDS YP_001186902.1 146306437 5109694 complement(1568347..1570383) 1 NC_009439.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1570383 metG 5109694 metG Pseudomonas mendocina ymp methionyl-tRNA synthetase YP_001186902.1 1568347 R 399739 CDS YP_001186903.1 146306438 5109695 1570568..1571656 1 NC_009439.1 PFAM: protein of unknown function DUF59; hypothetical protein 1571656 5109695 Pmen_1406 Pseudomonas mendocina ymp hypothetical protein YP_001186903.1 1570568 D 399739 CDS YP_001186904.1 146306439 5109696 complement(1572179..1572388) 1 NC_009439.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein 1572388 5109696 Pmen_1407 Pseudomonas mendocina ymp cold-shock DNA-binding protein family protein YP_001186904.1 1572179 R 399739 CDS YP_001186905.1 146306440 5109697 1572690..1573256 1 NC_009439.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1573256 dcd 5109697 dcd Pseudomonas mendocina ymp deoxycytidine triphosphate deaminase YP_001186905.1 1572690 D 399739 CDS YP_001186906.1 146306441 5109698 1573393..1573605 1 NC_009439.1 hypothetical protein 1573605 5109698 Pmen_1409 Pseudomonas mendocina ymp hypothetical protein YP_001186906.1 1573393 D 399739 CDS YP_001186907.1 146306442 5109699 complement(1573701..1574528) 1 NC_009439.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1574528 nadE 5109699 nadE Pseudomonas mendocina ymp NAD synthetase YP_001186907.1 1573701 R 399739 CDS YP_001186908.1 146306443 5109700 complement(1574539..1575738) 1 NC_009439.1 catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 1575738 5109700 Pmen_1411 Pseudomonas mendocina ymp nicotinate phosphoribosyltransferase YP_001186908.1 1574539 R 399739 CDS YP_001186909.1 146306444 5109701 complement(1575735..1576379) 1 NC_009439.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 1576379 5109701 Pmen_1412 Pseudomonas mendocina ymp isochorismatase hydrolase YP_001186909.1 1575735 R 399739 CDS YP_001186910.1 146306445 5109702 1576520..1577209 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 1577209 5109702 Pmen_1413 Pseudomonas mendocina ymp NUDIX hydrolase YP_001186910.1 1576520 D 399739 CDS YP_001186911.1 146306446 5109703 complement(1577468..1579981) 1 NC_009439.1 PFAM: peptidase S45, penicillin amidase; penicillin amidase 1579981 5109703 Pmen_1414 Pseudomonas mendocina ymp penicillin amidase YP_001186911.1 1577468 R 399739 CDS YP_001186912.1 146306447 5109704 complement(1580153..1580617) 1 NC_009439.1 hypothetical protein 1580617 5109704 Pmen_1415 Pseudomonas mendocina ymp hypothetical protein YP_001186912.1 1580153 R 399739 CDS YP_001186913.1 146306448 5109705 complement(1580625..1580816) 1 NC_009439.1 PFAM: SEC-C motif domain protein; SecC motif-containing protein 1580816 5109705 Pmen_1416 Pseudomonas mendocina ymp SecC motif-containing protein YP_001186913.1 1580625 R 399739 CDS YP_001186914.1 146306449 5109706 complement(1580822..1581319) 1 NC_009439.1 SMART: Water Stress and Hypersensitive response; water stress/hypersensitive response protein 1581319 5109706 Pmen_1417 Pseudomonas mendocina ymp water stress/hypersensitive response protein YP_001186914.1 1580822 R 399739 CDS YP_001186915.1 146306450 5109707 1581513..1582067 1 NC_009439.1 hypothetical protein 1582067 5109707 Pmen_1418 Pseudomonas mendocina ymp hypothetical protein YP_001186915.1 1581513 D 399739 CDS YP_001186916.1 146306451 5109708 complement(1582176..1583297) 1 NC_009439.1 hypothetical protein 1583297 5109708 Pmen_1419 Pseudomonas mendocina ymp hypothetical protein YP_001186916.1 1582176 R 399739 CDS YP_001186917.1 146306452 5109709 complement(1583364..1583846) 1 NC_009439.1 PFAM: SEC-C motif domain protein; hypothetical protein 1583846 5109709 Pmen_1420 Pseudomonas mendocina ymp hypothetical protein YP_001186917.1 1583364 R 399739 CDS YP_001186918.1 146306453 5109710 complement(1583851..1584348) 1 NC_009439.1 hypothetical protein 1584348 5109710 Pmen_1421 Pseudomonas mendocina ymp hypothetical protein YP_001186918.1 1583851 R 399739 CDS YP_001186919.1 146306454 5109711 1584512..1585144 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1585144 5109711 Pmen_1422 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001186919.1 1584512 D 399739 CDS YP_001186920.1 146306455 5109712 1585276..1586010 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1586010 5109712 Pmen_1423 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001186920.1 1585276 D 399739 CDS YP_001186921.1 146306456 5109713 1586080..1586469 1 NC_009439.1 PFAM: protein of unknown function DUF1145; hypothetical protein 1586469 5109713 Pmen_1424 Pseudomonas mendocina ymp hypothetical protein YP_001186921.1 1586080 D 399739 CDS YP_001186922.1 146306457 5109714 1586462..1587223 1 NC_009439.1 hypothetical protein 1587223 5109714 Pmen_1425 Pseudomonas mendocina ymp hypothetical protein YP_001186922.1 1586462 D 399739 CDS YP_001186923.1 146306458 5109715 complement(1587242..1587706) 1 NC_009439.1 hypothetical protein 1587706 5109715 Pmen_1426 Pseudomonas mendocina ymp hypothetical protein YP_001186923.1 1587242 R 399739 CDS YP_001186924.1 146306459 5109716 1587846..1589990 1 NC_009439.1 helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1589990 dinG 5109716 dinG Pseudomonas mendocina ymp ATP-dependent DNA helicase DinG YP_001186924.1 1587846 D 399739 CDS YP_001186925.1 146306460 5109717 complement(1589992..1590333) 1 NC_009439.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; monovalent cation/proton antiporter subunit MnhG/PhaG 1590333 5109717 Pmen_1428 Pseudomonas mendocina ymp monovalent cation/proton antiporter subunit MnhG/PhaG YP_001186925.1 1589992 R 399739 CDS YP_001186926.1 146306461 5109718 complement(1590330..1590641) 1 NC_009439.1 PFAM: multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 1590641 5109718 Pmen_1429 Pseudomonas mendocina ymp multiple resistance and pH regulation protein F YP_001186926.1 1590330 R 399739 CDS YP_001186927.1 146306462 5109719 complement(1590638..1591135) 1 NC_009439.1 PFAM: cation antiporter; cation antiporter 1591135 5109719 Pmen_1430 Pseudomonas mendocina ymp cation antiporter YP_001186927.1 1590638 R 399739 CDS YP_001186928.1 146306463 5109720 complement(1591135..1592631) 1 NC_009439.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) 1592631 5109720 Pmen_1431 Pseudomonas mendocina ymp NADH dehydrogenase (quinone) YP_001186928.1 1591135 R 399739 CDS YP_001186929.1 146306464 5109721 complement(1592628..1593032) 1 NC_009439.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1593032 5109721 Pmen_1432 Pseudomonas mendocina ymp NADH-ubiquinone oxidoreductase subunit 4L YP_001186929.1 1592628 R 399739 CDS YP_001186930.1 146306465 5109722 complement(1593032..1595752) 1 NC_009439.1 PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); Na+/H+ antiporter MnhB subunit-related protein; NADH dehydrogenase (quinone) 1595752 5109722 Pmen_1433 Pseudomonas mendocina ymp NADH dehydrogenase (quinone) YP_001186930.1 1593032 R 399739 CDS YP_001186931.1 146306466 5109723 1595992..1597137 1 NC_009439.1 PFAM: beta-lactamase; beta-lactamase 1597137 5109723 Pmen_1434 Pseudomonas mendocina ymp beta-lactamase YP_001186931.1 1595992 D 399739 CDS YP_001186932.1 146306467 5109724 1597220..1597873 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1597873 5109724 Pmen_1435 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001186932.1 1597220 D 399739 CDS YP_001186933.1 146306468 5109725 1597908..1598555 1 NC_009439.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 1598555 5109725 Pmen_1436 Pseudomonas mendocina ymp pyridoxamine 5'-phosphate oxidase YP_001186933.1 1597908 D 399739 CDS YP_001186934.1 146306469 5109726 1598629..1599744 1 NC_009439.1 PFAM: helix-turn-helix, Fis-type; sugar diacid recognition domain protein; CdaR family transcriptional regulator 1599744 5109726 Pmen_1437 Pseudomonas mendocina ymp CdaR family transcriptional regulator YP_001186934.1 1598629 D 399739 CDS YP_001186935.1 146306470 5109727 1599939..1601306 1 NC_009439.1 PFAM: Gluconate transporter; Citrate transporter; gluconate transporter 1601306 5109727 Pmen_1438 Pseudomonas mendocina ymp gluconate transporter YP_001186935.1 1599939 D 399739 CDS YP_001186936.1 146306471 5109728 1601362..1602504 1 NC_009439.1 PFAM: glycerate kinase; glycerate kinase 1602504 5109728 Pmen_1439 Pseudomonas mendocina ymp glycerate kinase YP_001186936.1 1601362 D 399739 CDS YP_001186937.1 146306472 5109729 1602629..1603090 1 NC_009439.1 PFAM: 17 kDa surface antigen; 17 kDa surface antigen 1603090 5109729 Pmen_1440 Pseudomonas mendocina ymp 17 kDa surface antigen YP_001186937.1 1602629 D 399739 CDS YP_001186938.1 146306473 5109730 1603470..1606262 1 NC_009439.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A 1606262 5109730 Pmen_1441 Pseudomonas mendocina ymp putative monovalent cation/H+ antiporter subunit A YP_001186938.1 1603470 D 399739 CDS YP_001186939.1 146306474 5109731 1606264..1606593 1 NC_009439.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 1606593 5109731 Pmen_1442 Pseudomonas mendocina ymp putative monovalent cation/H+ antiporter subunit C YP_001186939.1 1606264 D 399739 CDS YP_001186940.1 146306475 5109732 1606590..1608095 1 NC_009439.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 1608095 5109732 Pmen_1443 Pseudomonas mendocina ymp putative monovalent cation/H+ antiporter subunit D YP_001186940.1 1606590 D 399739 CDS YP_001186941.1 146306476 5109733 1608092..1608589 1 NC_009439.1 PFAM: cation antiporter; cation antiporter 1608589 5109733 Pmen_1444 Pseudomonas mendocina ymp cation antiporter YP_001186941.1 1608092 D 399739 CDS YP_001186942.1 146306477 5109734 1608574..1608843 1 NC_009439.1 PFAM: multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 1608843 5109734 Pmen_1445 Pseudomonas mendocina ymp multiple resistance and pH regulation protein F YP_001186942.1 1608574 D 399739 CDS YP_001186943.1 146306478 5109735 1608856..1609194 1 NC_009439.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 1609194 5109735 Pmen_1446 Pseudomonas mendocina ymp putative monovalent cation/H+ antiporter subunit G YP_001186943.1 1608856 D 399739 CDS YP_001186944.1 146306479 5109736 1609289..1610194 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1610194 5109736 Pmen_1447 Pseudomonas mendocina ymp hypothetical protein YP_001186944.1 1609289 D 399739 CDS YP_001186945.1 146306480 5109737 1610211..1610723 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1610723 5109737 Pmen_1448 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001186945.1 1610211 D 399739 CDS YP_001186946.1 146306481 5109738 1610720..1611124 1 NC_009439.1 hypothetical protein 1611124 5109738 Pmen_1449 Pseudomonas mendocina ymp hypothetical protein YP_001186946.1 1610720 D 399739 CDS YP_001186947.1 146306482 5109739 complement(1611121..1612734) 1 NC_009439.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase 1612734 5109739 Pmen_1450 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001186947.1 1611121 R 399739 CDS YP_001186948.1 146306483 5109740 complement(1612820..1613827) 1 NC_009439.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1613827 5109740 Pmen_1451 Pseudomonas mendocina ymp glyceraldehyde-3-phosphate dehydrogenase YP_001186948.1 1612820 R 399739 CDS YP_001186949.1 146306484 5109741 complement(1613986..1614654) 1 NC_009439.1 hypothetical protein 1614654 5109741 Pmen_1452 Pseudomonas mendocina ymp hypothetical protein YP_001186949.1 1613986 R 399739 CDS YP_001186950.1 146306485 5109742 1614880..1615761 1 NC_009439.1 PFAM: pseudouridine synthase; pseudouridine synthase 1615761 5109742 Pmen_1453 Pseudomonas mendocina ymp pseudouridine synthase YP_001186950.1 1614880 D 399739 CDS YP_001186951.1 146306486 5109743 complement(1615854..1616876) 1 NC_009439.1 PFAM: putative ammonia monooxygenase; putative ammonia monooxygenase 1616876 5109743 Pmen_1454 Pseudomonas mendocina ymp putative ammonia monooxygenase YP_001186951.1 1615854 R 399739 CDS YP_001186952.1 146306487 5109744 complement(1616860..1618380) 1 NC_009439.1 PFAM: protein of unknown function DUF112, transmembrane; hypothetical protein 1618380 5109744 Pmen_1455 Pseudomonas mendocina ymp hypothetical protein YP_001186952.1 1616860 R 399739 CDS YP_001186953.1 146306488 5109745 complement(1618382..1618825) 1 NC_009439.1 hypothetical protein 1618825 5109745 Pmen_1456 Pseudomonas mendocina ymp hypothetical protein YP_001186953.1 1618382 R 399739 CDS YP_001186954.1 146306489 5109746 complement(1618892..1619869) 1 NC_009439.1 PFAM: Uncharacterized protein UPF0065; hypothetical protein 1619869 5109746 Pmen_1457 Pseudomonas mendocina ymp hypothetical protein YP_001186954.1 1618892 R 399739 CDS YP_001186955.1 146306490 5109747 complement(1619901..1621166) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 1621166 5109747 Pmen_1458 Pseudomonas mendocina ymp outer membrane porin YP_001186955.1 1619901 R 399739 CDS YP_001186956.1 146306491 5109748 1621432..1622103 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1622103 5109748 Pmen_1459 Pseudomonas mendocina ymp two component transcriptional regulator YP_001186956.1 1621432 D 399739 CDS YP_001186957.1 146306492 5109749 1622100..1623497 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; integral membrane sensor signal transduction histidine kinase 1623497 5109749 Pmen_1460 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001186957.1 1622100 D 399739 CDS YP_001186958.1 146306493 5109750 complement(1623480..1624235) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1624235 5109750 Pmen_1461 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001186958.1 1623480 R 399739 CDS YP_001186959.1 146306494 5109751 complement(1624301..1625137) 1 NC_009439.1 PFAM: HDOD; putative signal transduction protein 1625137 5109751 Pmen_1462 Pseudomonas mendocina ymp putative signal transduction protein YP_001186959.1 1624301 R 399739 CDS YP_001186960.1 146306495 5109752 complement(1625184..1626125) 1 NC_009439.1 GcvT-like aminomethyltransferase 1626125 5109752 Pmen_1463 Pseudomonas mendocina ymp GcvT-like aminomethyltransferase YP_001186960.1 1625184 R 399739 CDS YP_001186961.1 146306496 5109753 1626271..1626525 1 NC_009439.1 PFAM: protein of unknown function DUF339; hypothetical protein 1626525 5109753 Pmen_1464 Pseudomonas mendocina ymp hypothetical protein YP_001186961.1 1626271 D 399739 CDS YP_001186962.1 146306497 5109754 1626509..1626976 1 NC_009439.1 hypothetical protein 1626976 5109754 Pmen_1465 Pseudomonas mendocina ymp hypothetical protein YP_001186962.1 1626509 D 399739 CDS YP_001186963.1 146306498 5109755 complement(1626930..1628561) 1 NC_009439.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 1628561 5109755 Pmen_1466 Pseudomonas mendocina ymp L-aspartate oxidase YP_001186963.1 1626930 R 399739 CDS YP_001186964.1 146306499 5109756 1628939..1629520 1 NC_009439.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor regulates genes involved in alginate biosynthesis; RNA polymerase sigma factor AlgU 1629520 algU 5109756 algU Pseudomonas mendocina ymp RNA polymerase sigma factor AlgU YP_001186964.1 1628939 D 399739 CDS YP_001186965.1 146306500 5109757 1629551..1630126 1 NC_009439.1 PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; anti sigma-E protein, RseA 1630126 5109757 Pmen_1468 Pseudomonas mendocina ymp anti sigma-E protein, RseA YP_001186965.1 1629551 D 399739 CDS YP_001186966.1 146306501 5109758 1630135..1631082 1 NC_009439.1 PFAM: MucB/RseB family protein; sigma E regulatory protein MucB/RseB 1631082 5109758 Pmen_1469 Pseudomonas mendocina ymp sigma E regulatory protein MucB/RseB YP_001186966.1 1630135 D 399739 CDS YP_001186967.1 146306502 5109759 1631079..1631534 1 NC_009439.1 PFAM: Positive regulator of sigma(E), RseC/MucC; sigma E positive regulator RseC/MucC 1631534 5109759 Pmen_1470 Pseudomonas mendocina ymp sigma E positive regulator RseC/MucC YP_001186967.1 1631079 D 399739 CDS YP_001186968.1 146306503 5109760 1631570..1632994 1 NC_009439.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1632994 5109760 Pmen_1471 Pseudomonas mendocina ymp protease Do YP_001186968.1 1631570 D 399739 CDS YP_001186969.1 146306504 5109761 1633146..1634945 1 NC_009439.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1634945 5109761 Pmen_1472 Pseudomonas mendocina ymp GTP-binding protein LepA YP_001186969.1 1633146 D 399739 CDS YP_001186970.1 146306505 5109762 1634952..1635806 1 NC_009439.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 1635806 5109762 Pmen_1473 Pseudomonas mendocina ymp signal peptidase I YP_001186970.1 1634952 D 399739 CDS YP_001186971.1 146306506 5109763 1635895..1636272 1 NC_009439.1 hypothetical protein 1636272 5109763 Pmen_1474 Pseudomonas mendocina ymp hypothetical protein YP_001186971.1 1635895 D 399739 CDS YP_001186972.1 146306507 5109764 1636269..1636958 1 NC_009439.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1636958 rnc 5109764 rnc Pseudomonas mendocina ymp ribonuclease III YP_001186972.1 1636269 D 399739 CDS YP_001186973.1 146306508 5109765 1636951..1637850 1 NC_009439.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1637850 era 5109765 era Pseudomonas mendocina ymp GTP-binding protein Era YP_001186973.1 1636951 D 399739 CDS YP_001186974.1 146306509 5109766 1637908..1638597 1 NC_009439.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1638597 recO 5109766 recO Pseudomonas mendocina ymp DNA repair protein RecO YP_001186974.1 1637908 D 399739 CDS YP_001186975.1 146306510 5108429 1638590..1639336 1 NC_009439.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1639336 5108429 Pmen_1478 Pseudomonas mendocina ymp pyridoxine 5'-phosphate synthase YP_001186975.1 1638590 D 399739 CDS YP_001186976.1 146306511 5108430 complement(1639440..1640324) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1640324 5108430 Pmen_1479 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001186976.1 1639440 R 399739 CDS YP_001186977.1 146306512 5108431 1640442..1640705 1 NC_009439.1 hypothetical protein 1640705 5108431 Pmen_1480 Pseudomonas mendocina ymp hypothetical protein YP_001186977.1 1640442 D 399739 CDS YP_001186978.1 146306513 5108432 complement(1640733..1641701) 1 NC_009439.1 TIGRFAM: putative methyltransferase; PFAM: methyltransferase, putative; Methyltransferase type 11; Methyltransferase type 12; putative methyltransferase 1641701 5108432 Pmen_1481 Pseudomonas mendocina ymp putative methyltransferase YP_001186978.1 1640733 R 399739 CDS YP_001186979.1 146306514 5108433 complement(1641698..1642441) 1 NC_009439.1 TIGRFAM: putative methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; putative methyltransferase 1642441 5108433 Pmen_1482 Pseudomonas mendocina ymp putative methyltransferase YP_001186979.1 1641698 R 399739 CDS YP_001186980.1 146306515 5108434 complement(1642542..1643180) 1 NC_009439.1 PFAM: YhhN family protein; hypothetical protein 1643180 5108434 Pmen_1483 Pseudomonas mendocina ymp hypothetical protein YP_001186980.1 1642542 R 399739 CDS YP_001186981.1 146306516 5108435 1643334..1644569 1 NC_009439.1 PFAM: sigma-70 region 2 domain protein; Tetratricopeptide TPR_2 repeat protein; Sigma-70, region 4 type 2; RNA polymerase ECF-subfamily sigma factor 1644569 5108435 Pmen_1484 Pseudomonas mendocina ymp RNA polymerase ECF-subfamily sigma factor YP_001186981.1 1643334 D 399739 CDS YP_001186982.1 146306517 5108436 complement(1644659..1647502) 1 NC_009439.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 1647502 5108436 Pmen_1485 Pseudomonas mendocina ymp ATP-dependent helicase HepA YP_001186982.1 1644659 R 399739 CDS YP_001186983.1 146306518 5108437 1647676..1647969 1 NC_009439.1 hypothetical protein 1647969 5108437 Pmen_1486 Pseudomonas mendocina ymp hypothetical protein YP_001186983.1 1647676 D 399739 CDS YP_001186984.1 146306519 5108438 1648005..1648604 1 NC_009439.1 PFAM: 2OG-Fe(II) oxygenase; DNA-N1-methyladenine dioxygenase 1648604 5108438 Pmen_1487 Pseudomonas mendocina ymp DNA-N1-methyladenine dioxygenase YP_001186984.1 1648005 D 399739 CDS YP_001186985.1 146306520 5108439 1648601..1648762 1 NC_009439.1 hypothetical protein 1648762 5108439 Pmen_1488 Pseudomonas mendocina ymp hypothetical protein YP_001186985.1 1648601 D 399739 CDS YP_001186986.1 146306521 5108440 1648964..1649080 1 NC_009439.1 hypothetical protein 1649080 5108440 Pmen_1489 Pseudomonas mendocina ymp hypothetical protein YP_001186986.1 1648964 D 399739 CDS YP_001186987.1 146306522 5108441 1649294..1651282 1 NC_009439.1 PFAM: Fusaric acid resistance protein conserved region; fusaric acid resistance protein region 1651282 5108441 Pmen_1490 Pseudomonas mendocina ymp fusaric acid resistance protein region YP_001186987.1 1649294 D 399739 CDS YP_001186988.1 146306523 5108442 1651269..1651472 1 NC_009439.1 PFAM: protein of unknown function DUF1656; hypothetical protein 1651472 5108442 Pmen_1491 Pseudomonas mendocina ymp hypothetical protein YP_001186988.1 1651269 D 399739 CDS YP_001186989.1 146306524 5108443 1651487..1652341 1 NC_009439.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 1652341 5108443 Pmen_1492 Pseudomonas mendocina ymp secretion protein HlyD family protein YP_001186989.1 1651487 D 399739 CDS YP_001186990.1 146306525 5108444 complement(1652379..1652849) 1 NC_009439.1 PFAM: MaoC domain protein dehydratase; dehydratase 1652849 5108444 Pmen_1493 Pseudomonas mendocina ymp dehydratase YP_001186990.1 1652379 R 399739 CDS YP_001186991.1 146306526 5108445 complement(1652846..1653826) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1653826 5108445 Pmen_1494 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001186991.1 1652846 R 399739 CDS YP_001186992.1 146306527 5108446 1654172..1655860 1 NC_009439.1 Disruption of the fadD2 gene did not have any effect on the catabolism of acetic, butyric and longer fatty acids (aliphatic or aromatic); however, might be involved in the specific activation of other fatty acids and may be functional when FadD1 is inactivated.; long-chain-fatty-acid--CoA ligase 1655860 5108446 Pmen_1495 Pseudomonas mendocina ymp long-chain-fatty-acid--CoA ligase YP_001186992.1 1654172 D 399739 CDS YP_001186993.1 146306528 5108447 1656266..1657954 1 NC_009439.1 activates fatty acids by binding to coenzyme A; involved in the beta-oxidation of n-alkanoic and n-phenylalkanoic acids; long-chain-fatty-acid--CoA ligase 1657954 5108447 Pmen_1496 Pseudomonas mendocina ymp long-chain-fatty-acid--CoA ligase YP_001186993.1 1656266 D 399739 CDS YP_001186994.1 146306529 5108448 complement(1658468..1659643) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1659643 5108448 Pmen_1497 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001186994.1 1658468 R 399739 CDS YP_001186995.1 146306530 5108449 complement(1659640..1660542) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1660542 5108449 Pmen_1498 Pseudomonas mendocina ymp hypothetical protein YP_001186995.1 1659640 R 399739 CDS YP_001186996.1 146306531 5108450 1660628..1661128 1 NC_009439.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 1661128 5108450 Pmen_1499 Pseudomonas mendocina ymp MarR family transcriptional regulator YP_001186996.1 1660628 D 399739 CDS YP_001186997.1 146306532 5108451 1661244..1661546 1 NC_009439.1 PFAM: regulatory protein, ArsR; ArsR family transcriptional regulator 1661546 5108451 Pmen_1500 Pseudomonas mendocina ymp ArsR family transcriptional regulator YP_001186997.1 1661244 D 399739 CDS YP_001186998.1 146306533 5108452 1661695..1662669 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 1662669 5108452 Pmen_1501 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001186998.1 1661695 D 399739 CDS YP_001186999.1 146306534 5108453 1662714..1663058 1 NC_009439.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1663058 5108453 Pmen_1502 Pseudomonas mendocina ymp antibiotic biosynthesis monooxygenase YP_001186999.1 1662714 D 399739 CDS YP_001187000.1 146306535 5108454 1663342..1663599 1 NC_009439.1 hypothetical protein 1663599 5108454 Pmen_1503 Pseudomonas mendocina ymp hypothetical protein YP_001187000.1 1663342 D 399739 CDS YP_001187001.1 146306536 5108455 complement(1663652..1664095) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR family transcriptional regulator 1664095 5108455 Pmen_1504 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187001.1 1663652 R 399739 CDS YP_001187002.1 146306537 5108456 1664176..1665363 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1665363 5108456 Pmen_1505 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187002.1 1664176 D 399739 CDS YP_001187003.1 146306538 5108457 1665596..1666585 1 NC_009439.1 hypothetical protein 1666585 5108457 Pmen_1506 Pseudomonas mendocina ymp hypothetical protein YP_001187003.1 1665596 D 399739 CDS YP_001187004.1 146306539 5108458 complement(1666635..1666937) 1 NC_009439.1 hypothetical protein 1666937 5108458 Pmen_1507 Pseudomonas mendocina ymp hypothetical protein YP_001187004.1 1666635 R 399739 CDS YP_001187005.1 146306540 5108459 complement(1667594..1668190) 1 NC_009439.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NADP oxidoreductase, coenzyme F420-dependent 1668190 5108459 Pmen_1508 Pseudomonas mendocina ymp NADP oxidoreductase, coenzyme F420-dependent YP_001187005.1 1667594 R 399739 CDS YP_001187006.1 146306541 5108460 complement(1668202..1668954) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1668954 5108460 Pmen_1509 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187006.1 1668202 R 399739 CDS YP_001187007.1 146306542 5108461 1669065..1670003 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1670003 5108461 Pmen_1510 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187007.1 1669065 D 399739 CDS YP_001187008.1 146306543 5108462 1670120..1674136 1 NC_009439.1 TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like; ATP-dependent helicase HrpA 1674136 5108462 Pmen_1511 Pseudomonas mendocina ymp ATP-dependent helicase HrpA YP_001187008.1 1670120 D 399739 CDS YP_001187009.1 146306544 5108463 1674185..1675630 1 NC_009439.1 lysophospholipase-like protein 1675630 5108463 Pmen_1512 Pseudomonas mendocina ymp lysophospholipase-like protein YP_001187009.1 1674185 D 399739 CDS YP_001187010.1 146306545 5106566 complement(1676053..1677387) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 1677387 5106566 Pmen_1514 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001187010.1 1676053 R 399739 CDS YP_001187011.1 146306546 5108465 1677471..1678085 1 NC_009439.1 PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein 1678085 5108465 Pmen_1515 Pseudomonas mendocina ymp ThiJ/PfpI domain-containing protein YP_001187011.1 1677471 D 399739 CDS YP_001187012.1 146306547 5108466 1678151..1678678 1 NC_009439.1 hypothetical protein 1678678 5108466 Pmen_1516 Pseudomonas mendocina ymp hypothetical protein YP_001187012.1 1678151 D 399739 CDS YP_001187013.1 146306548 5108467 complement(1678733..1679932) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1679932 5108467 Pmen_1517 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187013.1 1678733 R 399739 CDS YP_001187014.1 146306549 5108468 complement(1679996..1681069) 1 NC_009439.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; arsenical-resistance protein 1681069 5108468 Pmen_1518 Pseudomonas mendocina ymp arsenical-resistance protein YP_001187014.1 1679996 R 399739 CDS YP_001187015.1 146306550 5108469 1681176..1681952 1 NC_009439.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; regulatory protein, ArsR; ArsR family transcriptional regulator 1681952 5108469 Pmen_1519 Pseudomonas mendocina ymp ArsR family transcriptional regulator YP_001187015.1 1681176 D 399739 CDS YP_001187016.1 146306551 5108470 1682044..1682766 1 NC_009439.1 PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1682766 5108470 Pmen_1520 Pseudomonas mendocina ymp NADPH-dependent FMN reductase YP_001187016.1 1682044 D 399739 CDS YP_001187017.1 146306552 5108471 1682785..1683285 1 NC_009439.1 dual specificity protein phosphatase 1683285 5108471 Pmen_1521 Pseudomonas mendocina ymp dual specificity protein phosphatase YP_001187017.1 1682785 D 399739 CDS YP_001187018.1 146306553 5108472 1683299..1684303 1 NC_009439.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; glyceraldehyde-3-phosphate dehydrogenase 1684303 5108472 Pmen_1522 Pseudomonas mendocina ymp glyceraldehyde-3-phosphate dehydrogenase YP_001187018.1 1683299 D 399739 CDS YP_001187019.1 146306554 5108473 1684499..1685725 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1685725 5108473 Pmen_1523 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187019.1 1684499 D 399739 CDS YP_001187020.1 146306555 5108474 1685897..1686376 1 NC_009439.1 hypothetical protein 1686376 5108474 Pmen_1524 Pseudomonas mendocina ymp hypothetical protein YP_001187020.1 1685897 D 399739 CDS YP_001187021.1 146306556 5108475 1686556..1687866 1 NC_009439.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; CitMHS family citrate/H+ symporter 1687866 5108475 Pmen_1525 Pseudomonas mendocina ymp CitMHS family citrate/H+ symporter YP_001187021.1 1686556 D 399739 CDS YP_001187022.1 146306557 5108476 complement(1687971..1688528) 1 NC_009439.1 hypothetical protein 1688528 5108476 Pmen_1526 Pseudomonas mendocina ymp hypothetical protein YP_001187022.1 1687971 R 399739 CDS YP_001187023.1 146306558 5108477 complement(1688594..1689793) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1689793 5108477 Pmen_1527 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187023.1 1688594 R 399739 CDS YP_001187024.1 146306559 5108478 complement(1689869..1690792) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1690792 5108478 Pmen_1528 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187024.1 1689869 R 399739 CDS YP_001187025.1 146306560 5108479 1691143..1692129 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1692129 5108479 Pmen_1529 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187025.1 1691143 D 399739 CDS YP_001187026.1 146306561 5108480 1692176..1693492 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1693492 5108480 Pmen_1530 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187026.1 1692176 D 399739 CDS YP_001187027.1 146306562 5108481 complement(1693549..1694250) 1 NC_009439.1 PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 1694250 5108481 Pmen_1531 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001187027.1 1693549 R 399739 CDS YP_001187028.1 146306563 5108482 1694426..1694863 1 NC_009439.1 PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein 1694863 5108482 Pmen_1532 Pseudomonas mendocina ymp histidine triad (HIT) protein YP_001187028.1 1694426 D 399739 CDS YP_001187029.1 146306564 5108483 complement(1694917..1695183) 1 NC_009439.1 hypothetical protein 1695183 5108483 Pmen_1533 Pseudomonas mendocina ymp hypothetical protein YP_001187029.1 1694917 R 399739 CDS YP_001187030.1 146306565 5108484 1695368..1695793 1 NC_009439.1 hypothetical protein 1695793 5108484 Pmen_1534 Pseudomonas mendocina ymp hypothetical protein YP_001187030.1 1695368 D 399739 CDS YP_001187031.1 146306566 5108485 1695874..1697142 1 NC_009439.1 PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; FAD-binding monooxygenase 1697142 5108485 Pmen_1535 Pseudomonas mendocina ymp FAD-binding monooxygenase YP_001187031.1 1695874 D 399739 CDS YP_001187032.1 146306567 5108486 complement(1697144..1697557) 1 NC_009439.1 hypothetical protein 1697557 5108486 Pmen_1536 Pseudomonas mendocina ymp hypothetical protein YP_001187032.1 1697144 R 399739 CDS YP_001187033.1 146306568 5108487 complement(1697676..1698149) 1 NC_009439.1 hypothetical protein 1698149 5108487 Pmen_1537 Pseudomonas mendocina ymp hypothetical protein YP_001187033.1 1697676 R 399739 CDS YP_001187034.1 146306569 5108488 complement(1698340..1698792) 1 NC_009439.1 hypothetical protein 1698792 5108488 Pmen_1538 Pseudomonas mendocina ymp hypothetical protein YP_001187034.1 1698340 R 399739 CDS YP_001187035.1 146306570 5108489 complement(1698795..1700156) 1 NC_009439.1 hypothetical protein 1700156 5108489 Pmen_1539 Pseudomonas mendocina ymp hypothetical protein YP_001187035.1 1698795 R 399739 CDS YP_001187036.1 146306571 5108490 complement(1700308..1701060) 1 NC_009439.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 1701060 5108490 Pmen_1540 Pseudomonas mendocina ymp hypothetical protein YP_001187036.1 1700308 R 399739 CDS YP_001187037.1 146306572 5108491 1701203..1701769 1 NC_009439.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 1701769 5108491 Pmen_1541 Pseudomonas mendocina ymp nicotinamide mononucleotide transporter PnuC YP_001187037.1 1701203 D 399739 CDS YP_001187038.1 146306573 5108492 1701771..1702811 1 NC_009439.1 NAD metabolism ATPase/kinase-like protein 1702811 5108492 Pmen_1542 Pseudomonas mendocina ymp NAD metabolism ATPase/kinase-like protein YP_001187038.1 1701771 D 399739 CDS YP_001187039.1 146306574 5108493 complement(1702821..1703558) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 1703558 5108493 Pmen_1543 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001187039.1 1702821 R 399739 CDS YP_001187040.1 146306575 5108494 complement(1703558..1705168) 1 NC_009439.1 PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase 1705168 5108494 Pmen_1544 Pseudomonas mendocina ymp glutamate synthase YP_001187040.1 1703558 R 399739 CDS YP_001187041.1 146306576 5108495 1705399..1706526 1 NC_009439.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1706526 5108495 Pmen_1545 Pseudomonas mendocina ymp 3-oxoacyl-ACP synthase YP_001187041.1 1705399 D 399739 CDS YP_001187042.1 146306577 5108496 1706598..1707200 1 NC_009439.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 1707200 5108496 Pmen_1546 Pseudomonas mendocina ymp ECF subfamily RNA polymerase sigma-24 factor YP_001187042.1 1706598 D 399739 CDS YP_001187043.1 146306578 5108497 1707194..1707343 1 NC_009439.1 hypothetical protein 1707343 5108497 Pmen_1547 Pseudomonas mendocina ymp hypothetical protein YP_001187043.1 1707194 D 399739 CDS YP_001187044.1 146306579 5108498 complement(1707374..1708936) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 1708936 5108498 Pmen_1548 Pseudomonas mendocina ymp transposase IS66 YP_001187044.1 1707374 R 399739 CDS YP_001187045.1 146306580 5108499 complement(1708956..1709315) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 1709315 5108499 Pmen_1549 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001187045.1 1708956 R 399739 CDS YP_001187046.1 146306581 5108500 complement(1709312..1709578) 1 NC_009439.1 hypothetical protein 1709578 5108500 Pmen_1550 Pseudomonas mendocina ymp hypothetical protein YP_001187046.1 1709312 R 399739 CDS YP_001187047.1 146306582 5108501 complement(1709739..1710485) 1 NC_009439.1 hypothetical protein 1710485 5108501 Pmen_1551 Pseudomonas mendocina ymp hypothetical protein YP_001187047.1 1709739 R 399739 CDS YP_001187048.1 146306583 5108502 complement(1710624..1711286) 1 NC_009439.1 hypothetical protein 1711286 5108502 Pmen_1552 Pseudomonas mendocina ymp hypothetical protein YP_001187048.1 1710624 R 399739 CDS YP_001187049.1 146306584 5108503 1711818..1712111 1 NC_009439.1 hypothetical protein 1712111 5108503 Pmen_1553 Pseudomonas mendocina ymp hypothetical protein YP_001187049.1 1711818 D 399739 CDS YP_001187050.1 146306585 5108504 1712133..1712975 1 NC_009439.1 PFAM: protein of unknown function DUF692; hypothetical protein 1712975 5108504 Pmen_1554 Pseudomonas mendocina ymp hypothetical protein YP_001187050.1 1712133 D 399739 CDS YP_001187051.1 146306586 5108505 1712972..1713682 1 NC_009439.1 hypothetical protein 1713682 5108505 Pmen_1555 Pseudomonas mendocina ymp hypothetical protein YP_001187051.1 1712972 D 399739 CDS YP_001187052.1 146306587 5108506 1713688..1714287 1 NC_009439.1 PFAM: DoxX family protein; DoxX family protein 1714287 5108506 Pmen_1556 Pseudomonas mendocina ymp DoxX family protein YP_001187052.1 1713688 D 399739 CDS YP_001187053.1 146306588 5108507 complement(1714475..1715509) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 1715509 5108507 Pmen_1557 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187053.1 1714475 R 399739 CDS YP_001187054.1 146306589 5109216 1715635..1717230 1 NC_009439.1 PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 1717230 5109216 Pmen_1558 Pseudomonas mendocina ymp FAD linked oxidase domain-containing protein YP_001187054.1 1715635 D 399739 CDS YP_001187055.1 146306590 5109217 1717233..1718804 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 1718804 5109217 Pmen_1559 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001187055.1 1717233 D 399739 CDS YP_001187056.1 146306591 5109218 1718850..1720409 1 NC_009439.1 PFAM: carbohydrate kinase, FGGY; carbohydrate kinase 1720409 5109218 Pmen_1560 Pseudomonas mendocina ymp carbohydrate kinase YP_001187056.1 1718850 D 399739 CDS YP_001187057.1 146306592 5109219 complement(1720528..1721244) 1 NC_009439.1 PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; pirin domain-containing protein 1721244 5109219 Pmen_1561 Pseudomonas mendocina ymp pirin domain-containing protein YP_001187057.1 1720528 R 399739 CDS YP_001187058.1 146306593 5109220 1721397..1722299 1 NC_009439.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 1722299 5109220 Pmen_1562 Pseudomonas mendocina ymp lipid kinase YP_001187058.1 1721397 D 399739 CDS YP_001187059.1 146306594 5109221 complement(1722308..1722952) 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 1722952 5109221 Pmen_1563 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001187059.1 1722308 R 399739 CDS YP_001187060.1 146306595 5109222 complement(1723190..1724257) 1 NC_009439.1 PFAM: CheB methylesterase; response regulator receiver; response regulator receiver modulated CheB methylesterase 1724257 5109222 Pmen_1564 Pseudomonas mendocina ymp response regulator receiver modulated CheB methylesterase YP_001187060.1 1723190 R 399739 CDS YP_001187061.1 146306596 5109223 complement(1724280..1725089) 1 NC_009439.1 PFAM: MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase 1725089 5109223 Pmen_1565 Pseudomonas mendocina ymp protein-glutamate O-methyltransferase YP_001187061.1 1724280 R 399739 CDS YP_001187062.1 146306597 5109224 complement(1725089..1725598) 1 NC_009439.1 PFAM: CheW domain protein; putative CheW protein 1725598 5109224 Pmen_1566 Pseudomonas mendocina ymp putative CheW protein YP_001187062.1 1725089 R 399739 CDS YP_001187063.1 146306598 5109225 complement(1725609..1727252) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1727252 5109225 Pmen_1567 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187063.1 1725609 R 399739 CDS YP_001187064.1 146306599 5109226 complement(1727266..1729485) 1 NC_009439.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; CheA signal transduction histidine kinase 1729485 5109226 Pmen_1568 Pseudomonas mendocina ymp CheA signal transduction histidine kinase YP_001187064.1 1727266 R 399739 CDS YP_001187065.1 146306600 5109227 complement(1729499..1729825) 1 NC_009439.1 hypothetical protein 1729825 5109227 Pmen_1569 Pseudomonas mendocina ymp hypothetical protein YP_001187065.1 1729499 R 399739 CDS YP_001187066.1 146306601 5109228 complement(1729827..1730192) 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 1730192 5109228 Pmen_1570 Pseudomonas mendocina ymp response regulator receiver protein YP_001187066.1 1729827 R 399739 CDS YP_001187067.1 146306602 5109229 complement(1730214..1731302) 1 NC_009439.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1731302 5109229 Pmen_1571 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187067.1 1730214 R 399739 CDS YP_001187068.1 146306603 5109230 1731559..1732491 1 NC_009439.1 PFAM: response regulator receiver; CheW domain protein; CheW protein 1732491 5109230 Pmen_1572 Pseudomonas mendocina ymp CheW protein YP_001187068.1 1731559 D 399739 CDS YP_001187069.1 146306604 5109231 1732647..1733453 1 NC_009439.1 PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; MOSC domain-containing protein 1733453 5109231 Pmen_1573 Pseudomonas mendocina ymp MOSC domain-containing protein YP_001187069.1 1732647 D 399739 CDS YP_001187070.1 146306605 5109232 complement(1733573..1735210) 1 NC_009439.1 hypothetical protein 1735210 5109232 Pmen_1574 Pseudomonas mendocina ymp hypothetical protein YP_001187070.1 1733573 R 399739 CDS YP_001187071.1 146306606 5109233 complement(1735673..1737655) 1 NC_009439.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 1737655 5109233 Pmen_1575 Pseudomonas mendocina ymp lytic transglycosylase YP_001187071.1 1735673 R 399739 CDS YP_001187072.1 146306607 5109234 1737890..1739815 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1739815 5109234 Pmen_1576 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187072.1 1737890 D 399739 CDS YP_001187073.1 146306608 5109235 1739834..1740520 1 NC_009439.1 hypothetical protein 1740520 5109235 Pmen_1577 Pseudomonas mendocina ymp hypothetical protein YP_001187073.1 1739834 D 399739 CDS YP_001187074.1 146306609 5109236 complement(1740613..1741062) 1 NC_009439.1 PFAM: UspA domain protein; UspA domain-containing protein 1741062 5109236 Pmen_1578 Pseudomonas mendocina ymp UspA domain-containing protein YP_001187074.1 1740613 R 399739 CDS YP_001187075.1 146306610 5109237 complement(1741214..1742035) 1 NC_009439.1 hypothetical protein 1742035 5109237 Pmen_1579 Pseudomonas mendocina ymp hypothetical protein YP_001187075.1 1741214 R 399739 CDS YP_001187076.1 146306611 5109238 1742502..1744649 1 NC_009439.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 1744649 fadB 5109238 fadB Pseudomonas mendocina ymp multifunctional fatty acid oxidation complex subunit alpha YP_001187076.1 1742502 D 399739 CDS YP_001187077.1 146306612 5109239 1744680..1745855 1 NC_009439.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 1745855 fadA 5109239 fadA Pseudomonas mendocina ymp 3-ketoacyl-CoA thiolase YP_001187077.1 1744680 D 399739 CDS YP_001187078.1 146306613 5109240 1745929..1746171 1 NC_009439.1 PFAM: protein of unknown function DUF1653; hypothetical protein 1746171 5109240 Pmen_1582 Pseudomonas mendocina ymp hypothetical protein YP_001187078.1 1745929 D 399739 CDS YP_001187079.1 146306614 5109241 1746276..1748882 1 NC_009439.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1748882 5109241 Pmen_1583 Pseudomonas mendocina ymp DNA topoisomerase I YP_001187079.1 1746276 D 399739 CDS YP_001187080.1 146306615 5109242 1749040..1749558 1 NC_009439.1 hypothetical protein 1749558 5109242 Pmen_1584 Pseudomonas mendocina ymp hypothetical protein YP_001187080.1 1749040 D 399739 CDS YP_001187081.1 146306616 5109243 1749639..1749875 1 NC_009439.1 hypothetical protein 1749875 5109243 Pmen_1585 Pseudomonas mendocina ymp hypothetical protein YP_001187081.1 1749639 D 399739 CDS YP_001187082.1 146306617 5109244 complement(1749941..1750411) 1 NC_009439.1 SOS cell division inhibitor SulA 1750411 5109244 Pmen_1586 Pseudomonas mendocina ymp SOS cell division inhibitor SulA YP_001187082.1 1749941 R 399739 CDS YP_001187083.1 146306618 5109245 complement(1750421..1751035) 1 NC_009439.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1751035 5109245 Pmen_1587 Pseudomonas mendocina ymp LexA repressor YP_001187083.1 1750421 R 399739 CDS YP_001187084.1 146306619 5109246 1751264..1751971 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1751971 5109246 Pmen_1588 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001187084.1 1751264 D 399739 CDS YP_001187085.1 146306620 5109247 1752019..1752543 1 NC_009439.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1752543 5109247 Pmen_1589 Pseudomonas mendocina ymp ErfK/YbiS/YcfS/YnhG family protein YP_001187085.1 1752019 D 399739 CDS YP_001187086.1 146306621 5109248 1752554..1753564 1 NC_009439.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1753564 5109248 Pmen_1590 Pseudomonas mendocina ymp beta-hexosaminidase YP_001187086.1 1752554 D 399739 CDS YP_001187087.1 146306622 5109249 1753575..1754312 1 NC_009439.1 Catalyzes the phosphorolytic cleavage of 6-oxopurine nucleosides; 5'-methylthioadenosine phosphorylase 1754312 5109249 Pmen_1591 Pseudomonas mendocina ymp 5'-methylthioadenosine phosphorylase YP_001187087.1 1753575 D 399739 CDS YP_001187088.1 146306623 5109250 complement(1754365..1754886) 1 NC_009439.1 hypothetical protein 1754886 5109250 Pmen_1592 Pseudomonas mendocina ymp hypothetical protein YP_001187088.1 1754365 R 399739 CDS YP_001187089.1 146306624 5109251 complement(1754898..1758335) 1 NC_009439.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor 1758335 5109251 Pmen_1593 Pseudomonas mendocina ymp transcription-repair coupling factor YP_001187089.1 1754898 R 399739 CDS YP_001187090.1 146306625 5109252 1758467..1759933 1 NC_009439.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1759933 5109252 Pmen_1594 Pseudomonas mendocina ymp glyceraldehyde-3-phosphate dehydrogenase YP_001187090.1 1758467 D 399739 CDS YP_001187091.1 146306626 5109253 1760253..1761590 1 NC_009439.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1761590 5109253 Pmen_1595 Pseudomonas mendocina ymp Na(+)-translocating NADH-quinone reductase subunit A YP_001187091.1 1760253 D 399739 CDS YP_001187092.1 146306627 5109254 1761594..1762805 1 NC_009439.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1762805 5109254 Pmen_1596 Pseudomonas mendocina ymp Na(+)-translocating NADH-quinone reductase subunit B YP_001187092.1 1761594 D 399739 CDS YP_001187093.1 146306628 5109255 1762798..1763586 1 NC_009439.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1763586 5109255 Pmen_1597 Pseudomonas mendocina ymp Na(+)-translocating NADH-quinone reductase subunit C YP_001187093.1 1762798 D 399739 CDS YP_001187094.1 146306629 5109256 1763589..1764257 1 NC_009439.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1764257 5109256 Pmen_1598 Pseudomonas mendocina ymp Na(+)-translocating NADH-quinone reductase subunit D YP_001187094.1 1763589 D 399739 CDS YP_001187095.1 146306630 5109257 1764257..1764865 1 NC_009439.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1764865 5109257 Pmen_1599 Pseudomonas mendocina ymp Na(+)-translocating NADH-quinone reductase subunit E YP_001187095.1 1764257 D 399739 CDS YP_001187096.1 146306631 5109258 1764881..1766104 1 NC_009439.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1766104 5109258 Pmen_1600 Pseudomonas mendocina ymp Na(+)-translocating NADH-quinone reductase subunit F YP_001187096.1 1764881 D 399739 CDS YP_001187097.1 146306632 5109259 1766108..1767133 1 NC_009439.1 PFAM: ApbE family lipoprotein; ApbE family lipoprotein 1767133 5109259 Pmen_1601 Pseudomonas mendocina ymp ApbE family lipoprotein YP_001187097.1 1766108 D 399739 CDS YP_001187098.1 146306633 5109260 1767130..1767360 1 NC_009439.1 PFAM: protein of unknown function DUF539; hypothetical protein 1767360 5109260 Pmen_1602 Pseudomonas mendocina ymp hypothetical protein YP_001187098.1 1767130 D 399739 CDS YP_001187099.1 146306634 5109261 1767457..1768851 1 NC_009439.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 1768851 5109261 Pmen_1603 Pseudomonas mendocina ymp soluble pyridine nucleotide transhydrogenase YP_001187099.1 1767457 D 399739 CDS YP_001187100.1 146306635 5109262 complement(1769114..1769833) 1 NC_009439.1 PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 1769833 5109262 Pmen_1604 Pseudomonas mendocina ymp glycerophosphoryl diester phosphodiesterase YP_001187100.1 1769114 R 399739 CDS YP_001187101.1 146306636 5109263 complement(1769830..1770138) 1 NC_009439.1 hypothetical protein 1770138 5109263 Pmen_1605 Pseudomonas mendocina ymp hypothetical protein YP_001187101.1 1769830 R 399739 CDS YP_001187102.1 146306637 5109264 complement(1770158..1770724) 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 1770724 5109264 Pmen_1606 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001187102.1 1770158 R 399739 CDS YP_001187103.1 146306638 5109265 1771021..1772268 1 NC_009439.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein 1772268 5109265 Pmen_1607 Pseudomonas mendocina ymp LolC/E family lipoprotein releasing system, transmembrane protein YP_001187103.1 1771021 D 399739 CDS YP_001187104.1 146306639 5109266 1772261..1772974 1 NC_009439.1 TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein 1772974 5109266 Pmen_1608 Pseudomonas mendocina ymp lipoprotein releasing system, ATP-binding protein YP_001187104.1 1772261 D 399739 CDS YP_001187105.1 146306640 5109267 1772974..1774218 1 NC_009439.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein 1774218 5109267 Pmen_1609 Pseudomonas mendocina ymp LolC/E family lipoprotein releasing system, transmembrane protein YP_001187105.1 1772974 D 399739 CDS YP_001187106.1 146306641 5109268 complement(1774253..1774780) 1 NC_009439.1 hypothetical protein 1774780 5109268 Pmen_1610 Pseudomonas mendocina ymp hypothetical protein YP_001187106.1 1774253 R 399739 CDS YP_001187107.1 146306642 5109269 1774908..1777133 1 NC_009439.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2 1777133 5109269 Pmen_1611 Pseudomonas mendocina ymp DNA internalization-related competence protein ComEC/Rec2 YP_001187107.1 1774908 D 399739 CDS YP_001187108.1 146306643 5109270 1777206..1777838 1 NC_009439.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1777838 5109270 Pmen_1612 Pseudomonas mendocina ymp MotA/TolQ/ExbB proton channel YP_001187108.1 1777206 D 399739 CDS YP_001187109.1 146306644 5109271 1777835..1778263 1 NC_009439.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1778263 5109271 Pmen_1613 Pseudomonas mendocina ymp biopolymer transport protein ExbD/TolR YP_001187109.1 1777835 D 399739 CDS YP_001187110.1 146306645 5109272 1778264..1779265 1 NC_009439.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 1779265 lpxK 5109272 lpxK Pseudomonas mendocina ymp tetraacyldisaccharide 4'-kinase YP_001187110.1 1778264 D 399739 CDS YP_001187111.1 146306646 5109273 1779288..1779473 1 NC_009439.1 PFAM: protein of unknown function DUF343; hypothetical protein 1779473 5109273 Pmen_1615 Pseudomonas mendocina ymp hypothetical protein YP_001187111.1 1779288 D 399739 CDS YP_001187112.1 146306647 5109274 1779474..1780238 1 NC_009439.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 1780238 5109274 Pmen_1616 Pseudomonas mendocina ymp 3-deoxy-manno-octulosonate cytidylyltransferase YP_001187112.1 1779474 D 399739 CDS YP_001187113.1 146306648 5109275 1780238..1780702 1 NC_009439.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; protein tyrosine phosphatase 1780702 5109275 Pmen_1617 Pseudomonas mendocina ymp protein tyrosine phosphatase YP_001187113.1 1780238 D 399739 CDS YP_001187114.1 146306649 5109276 1780699..1781718 1 NC_009439.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1781718 murB 5109276 murB Pseudomonas mendocina ymp UDP-N-acetylenolpyruvoylglucosamine reductase YP_001187114.1 1780699 D 399739 CDS YP_001187115.1 146306650 5109277 complement(1781834..1784872) 1 NC_009439.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; RNAse E 1784872 5109277 Pmen_1619 Pseudomonas mendocina ymp RNAse E YP_001187115.1 1781834 R 399739 CDS YP_001187116.1 146306651 5109278 1785405..1786403 1 NC_009439.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase C 1786403 5109278 Pmen_1620 Pseudomonas mendocina ymp ribosomal large subunit pseudouridine synthase C YP_001187116.1 1785405 D 399739 CDS YP_001187117.1 146306652 5109279 1786396..1787091 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 1787091 5109279 Pmen_1621 Pseudomonas mendocina ymp HAD family hydrolase YP_001187117.1 1786396 D 399739 CDS YP_001187118.1 146306653 5109280 1787081..1788061 1 NC_009439.1 TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type 1788061 5109280 Pmen_1622 Pseudomonas mendocina ymp signal peptide peptidase SppA, 36K type YP_001187118.1 1787081 D 399739 CDS YP_001187119.1 146306654 5109281 complement(1788110..1788691) 1 NC_009439.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1788691 5109281 Pmen_1623 Pseudomonas mendocina ymp Maf-like protein YP_001187119.1 1788110 R 399739 CDS YP_001187120.1 146306655 5109282 1788802..1789329 1 NC_009439.1 PFAM: protein of unknown function DUF177; hypothetical protein 1789329 5109282 Pmen_1624 Pseudomonas mendocina ymp hypothetical protein YP_001187120.1 1788802 D 399739 CDS YP_001187121.1 146306656 5109283 1789343..1789525 1 NC_009439.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1789525 rpmF 5109283 rpmF Pseudomonas mendocina ymp 50S ribosomal protein L32 YP_001187121.1 1789343 D 399739 CDS YP_001187122.1 146306657 5109284 1789559..1790539 1 NC_009439.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1790539 5109284 Pmen_1626 Pseudomonas mendocina ymp putative glycerol-3-phosphate acyltransferase PlsX YP_001187122.1 1789559 D 399739 CDS YP_001187123.1 146306658 5109285 1790665..1791603 1 NC_009439.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; ACP S-malonyltransferase 1791603 5109285 Pmen_1627 Pseudomonas mendocina ymp ACP S-malonyltransferase YP_001187123.1 1790665 D 399739 CDS YP_001187124.1 146306659 5109286 1791627..1792370 1 NC_009439.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1792370 fabG 5109286 fabG Pseudomonas mendocina ymp 3-ketoacyl-ACP reductase YP_001187124.1 1791627 D 399739 CDS YP_001187125.1 146306660 5109287 1792601..1792837 1 NC_009439.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1792837 acpP 5109287 acpP Pseudomonas mendocina ymp acyl carrier protein YP_001187125.1 1792601 D 399739 CDS YP_001187126.1 146306661 5109288 1792948..1794192 1 NC_009439.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1794192 5109288 Pmen_1630 Pseudomonas mendocina ymp 3-oxoacyl-(acyl carrier protein) synthase II YP_001187126.1 1792948 D 399739 CDS YP_001187127.1 146306662 5109289 1794192..1795007 1 NC_009439.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 1795007 5109289 Pmen_1631 Pseudomonas mendocina ymp 4-amino-4-deoxychorismate lyase YP_001187127.1 1794192 D 399739 CDS YP_001187128.1 146306663 5109290 1795011..1796066 1 NC_009439.1 PFAM: aminodeoxychorismate lyase; aminodeoxychorismate lyase 1796066 5109290 Pmen_1632 Pseudomonas mendocina ymp aminodeoxychorismate lyase YP_001187128.1 1795011 D 399739 CDS YP_001187129.1 146306664 5109291 1796076..1796708 1 NC_009439.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1796708 tmk 5109291 tmk Pseudomonas mendocina ymp thymidylate kinase YP_001187129.1 1796076 D 399739 CDS YP_001187130.1 146306665 5109292 1796701..1797693 1 NC_009439.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1797693 5109292 Pmen_1634 Pseudomonas mendocina ymp DNA polymerase III subunit delta' YP_001187130.1 1796701 D 399739 CDS YP_001187131.1 146306666 5109293 1797819..1798175 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 1798175 5109293 Pmen_1635 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001187131.1 1797819 D 399739 CDS YP_001187132.1 146306667 5109294 1798210..1799073 1 NC_009439.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 1799073 5109294 Pmen_1636 Pseudomonas mendocina ymp TatD family hydrolase YP_001187132.1 1798210 D 399739 CDS YP_001187133.1 146306668 5109611 complement(1799426..1800559) 1 NC_009439.1 PFAM: aminotransferase, class V; class V aminotransferase 1800559 5109611 Pmen_1637 Pseudomonas mendocina ymp class V aminotransferase YP_001187133.1 1799426 R 399739 CDS YP_001187134.1 146306669 5109612 1800635..1801255 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1801255 5109612 Pmen_1638 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001187134.1 1800635 D 399739 CDS YP_001187135.1 146306670 5109613 1801389..1802357 1 NC_009439.1 PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor synthesis domain-containing protein 1802357 5109613 Pmen_1639 Pseudomonas mendocina ymp molybdenum cofactor synthesis domain-containing protein YP_001187135.1 1801389 D 399739 CDS YP_001187136.1 146306671 5109614 1802588..1803481 1 NC_009439.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 1803481 5109614 Pmen_1640 Pseudomonas mendocina ymp radical SAM domain-containing protein YP_001187136.1 1802588 D 399739 CDS YP_001187137.1 146306672 5109615 1803555..1804157 1 NC_009439.1 hypothetical protein 1804157 5109615 Pmen_1641 Pseudomonas mendocina ymp hypothetical protein YP_001187137.1 1803555 D 399739 CDS YP_001187138.1 146306673 5109616 1804318..1804887 1 NC_009439.1 PFAM: protein of unknown function DUF1285; hypothetical protein 1804887 5109616 Pmen_1642 Pseudomonas mendocina ymp hypothetical protein YP_001187138.1 1804318 D 399739 CDS YP_001187139.1 146306674 5109617 1804952..1805482 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1805482 5109617 Pmen_1643 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001187139.1 1804952 D 399739 CDS YP_001187140.1 146306675 5109618 1805479..1805802 1 NC_009439.1 protein tyrosine phosphatase-like protein 1805802 5109618 Pmen_1644 Pseudomonas mendocina ymp protein tyrosine phosphatase-like protein YP_001187140.1 1805479 D 399739 CDS YP_001187141.1 146306676 5109619 complement(1805813..1807585) 1 NC_009439.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase S8/S53 subtilisin kexin sedolisin 1807585 5109619 Pmen_1645 Pseudomonas mendocina ymp peptidase S8/S53 subtilisin kexin sedolisin YP_001187141.1 1805813 R 399739 CDS YP_001187142.1 146306677 5109620 1807780..1809657 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 1809657 5109620 Pmen_1646 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase YP_001187142.1 1807780 D 399739 CDS YP_001187143.1 146306678 5109621 complement(1809749..1810309) 1 NC_009439.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; PfpI family intracellular peptidase 1810309 5109621 Pmen_1647 Pseudomonas mendocina ymp PfpI family intracellular peptidase YP_001187143.1 1809749 R 399739 CDS YP_001187144.1 146306679 5109622 complement(1810505..1811050) 1 NC_009439.1 hypothetical protein 1811050 5109622 Pmen_1648 Pseudomonas mendocina ymp hypothetical protein YP_001187144.1 1810505 R 399739 CDS YP_001187145.1 146306680 5109623 1811650..1811994 1 NC_009439.1 hypothetical protein 1811994 5109623 Pmen_1649 Pseudomonas mendocina ymp hypothetical protein YP_001187145.1 1811650 D 399739 CDS YP_001187146.1 146306681 5109624 complement(1812089..1813039) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 1813039 5109624 Pmen_1650 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187146.1 1812089 R 399739 CDS YP_001187147.1 146306682 5109625 1813264..1814028 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1814028 5109625 Pmen_1651 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187147.1 1813264 D 399739 CDS YP_001187148.1 146306683 5109626 1814226..1815497 1 NC_009439.1 hypothetical protein 1815497 5109626 Pmen_1652 Pseudomonas mendocina ymp hypothetical protein YP_001187148.1 1814226 D 399739 CDS YP_001187149.1 146306684 5109627 complement(1815543..1816631) 1 NC_009439.1 PFAM: protein of unknown function UPF0118; hypothetical protein 1816631 5109627 Pmen_1653 Pseudomonas mendocina ymp hypothetical protein YP_001187149.1 1815543 R 399739 CDS YP_001187150.1 146306685 5109628 1816772..1817482 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 1817482 5109628 Pmen_1654 Pseudomonas mendocina ymp type 11 methyltransferase YP_001187150.1 1816772 D 399739 CDS YP_001187151.1 146306686 5109629 complement(1817492..1817884) 1 NC_009439.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1817884 5109629 Pmen_1655 Pseudomonas mendocina ymp glutathione-dependent formaldehyde-activating protein YP_001187151.1 1817492 R 399739 CDS YP_001187152.1 146306687 5109630 1818056..1818448 1 NC_009439.1 hypothetical protein 1818448 5109630 Pmen_1656 Pseudomonas mendocina ymp hypothetical protein YP_001187152.1 1818056 D 399739 CDS YP_001187153.1 146306688 5109631 1818602..1820305 1 NC_009439.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1820305 5109631 Pmen_1657 Pseudomonas mendocina ymp amidase YP_001187153.1 1818602 D 399739 CDS YP_001187154.1 146306689 5109632 complement(1820353..1821786) 1 NC_009439.1 PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 1821786 5109632 Pmen_1658 Pseudomonas mendocina ymp peptidase M48, Ste24p YP_001187154.1 1820353 R 399739 CDS YP_001187155.1 146306690 5109633 1821894..1822133 1 NC_009439.1 PFAM: SirA family protein; SirA family protein 1822133 5109633 Pmen_1659 Pseudomonas mendocina ymp SirA family protein YP_001187155.1 1821894 D 399739 CDS YP_001187156.1 146306691 5109634 1822245..1823315 1 NC_009439.1 PFAM: protein of unknown function UPF0118; hypothetical protein 1823315 5109634 Pmen_1660 Pseudomonas mendocina ymp hypothetical protein YP_001187156.1 1822245 D 399739 CDS YP_001187157.1 146306692 5109635 complement(1823368..1823841) 1 NC_009439.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 1823841 5109635 Pmen_1661 Pseudomonas mendocina ymp alkyl hydroperoxide reductase YP_001187157.1 1823368 R 399739 CDS YP_001187158.1 146306693 5109636 complement(1823864..1824421) 1 NC_009439.1 glycine cleavage system regulatory protein-like protein 1824421 5109636 Pmen_1662 Pseudomonas mendocina ymp glycine cleavage system regulatory protein-like protein YP_001187158.1 1823864 R 399739 CDS YP_001187159.1 146306694 5109637 1824627..1825505 1 NC_009439.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1825505 5109637 Pmen_1663 Pseudomonas mendocina ymp dihydrodipicolinate synthase YP_001187159.1 1824627 D 399739 CDS YP_001187160.1 146306695 5109638 1825522..1826643 1 NC_009439.1 hypothetical protein 1826643 5109638 Pmen_1664 Pseudomonas mendocina ymp hypothetical protein YP_001187160.1 1825522 D 399739 CDS YP_001187161.1 146306696 5109639 1826731..1827600 1 NC_009439.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1827600 5109639 Pmen_1665 Pseudomonas mendocina ymp phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_001187161.1 1826731 D 399739 CDS YP_001187162.1 146306697 5106567 1828235..1828915 1 NC_009439.1 hypothetical protein 1828915 5106567 Pmen_1666 Pseudomonas mendocina ymp hypothetical protein YP_001187162.1 1828235 D 399739 CDS YP_001187163.1 146306698 5109641 complement(1828987..1830468) 1 NC_009439.1 hypothetical protein 1830468 5109641 Pmen_1667 Pseudomonas mendocina ymp hypothetical protein YP_001187163.1 1828987 R 399739 CDS YP_001187164.1 146306699 5109642 complement(1830483..1831598) 1 NC_009439.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 1831598 algL 5109642 algL Pseudomonas mendocina ymp poly(beta-D-mannuronate) lyase YP_001187164.1 1830483 R 399739 CDS YP_001187165.1 146306700 5109643 complement(1831589..1833007) 1 NC_009439.1 hypothetical protein 1833007 5109643 Pmen_1669 Pseudomonas mendocina ymp hypothetical protein YP_001187165.1 1831589 R 399739 CDS YP_001187166.1 146306701 5109644 complement(1833042..1833683) 1 NC_009439.1 hypothetical protein 1833683 5109644 Pmen_1670 Pseudomonas mendocina ymp hypothetical protein YP_001187166.1 1833042 R 399739 CDS YP_001187167.1 146306702 5109645 complement(1833699..1834805) 1 NC_009439.1 hypothetical protein 1834805 5109645 Pmen_1671 Pseudomonas mendocina ymp hypothetical protein YP_001187167.1 1833699 R 399739 CDS YP_001187168.1 146306703 5109646 complement(1834816..1836249) 1 NC_009439.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase, MBOAT family protein 1836249 5109646 Pmen_1672 Pseudomonas mendocina ymp membrane bound O-acyl transferase, MBOAT family protein YP_001187168.1 1834816 R 399739 CDS YP_001187169.1 146306704 5109647 complement(1836267..1837658) 1 NC_009439.1 hypothetical protein 1837658 5109647 Pmen_1673 Pseudomonas mendocina ymp hypothetical protein YP_001187169.1 1836267 R 399739 CDS YP_001187170.1 146306705 5109648 complement(1837655..1839130) 1 NC_009439.1 hypothetical protein 1839130 5109648 Pmen_1674 Pseudomonas mendocina ymp hypothetical protein YP_001187170.1 1837655 R 399739 CDS YP_001187171.1 146306706 5109649 complement(1839138..1840283) 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 1840283 5109649 Pmen_1675 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001187171.1 1839138 R 399739 CDS YP_001187172.1 146306707 5109650 complement(1840301..1841821) 1 NC_009439.1 hypothetical protein 1841821 5109650 Pmen_1676 Pseudomonas mendocina ymp hypothetical protein YP_001187172.1 1840301 R 399739 CDS YP_001187173.1 146306708 5109651 complement(1841882..1843306) 1 NC_009439.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase 1843306 5109651 Pmen_1677 Pseudomonas mendocina ymp mannose-1-phosphate guanylyltransferase YP_001187173.1 1841882 R 399739 CDS YP_001187174.1 146306709 5109652 complement(1843421..1844731) 1 NC_009439.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; GDP-mannose 6-dehydrogenase 1844731 5109652 Pmen_1678 Pseudomonas mendocina ymp GDP-mannose 6-dehydrogenase YP_001187174.1 1843421 R 399739 CDS YP_001187175.1 146306710 5109653 complement(1845636..1848782) 1 NC_009439.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 1848782 5109653 Pmen_1679 Pseudomonas mendocina ymp acriflavin resistance protein YP_001187175.1 1845636 R 399739 CDS YP_001187176.1 146306711 5109654 complement(1848784..1849866) 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1849866 5109654 Pmen_1680 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001187176.1 1848784 R 399739 CDS YP_001187177.1 146306712 5109655 complement(1849872..1850522) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1850522 5109655 Pmen_1681 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001187177.1 1849872 R 399739 CDS YP_001187178.1 146306713 5109656 complement(1850777..1851694) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1851694 5109656 Pmen_1682 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187178.1 1850777 R 399739 CDS YP_001187179.1 146306714 5109657 1851864..1854167 1 NC_009439.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1854167 5109657 Pmen_1683 Pseudomonas mendocina ymp 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001187179.1 1851864 D 399739 CDS YP_001187180.1 146306715 5109658 1854364..1855353 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 1855353 5109658 Pmen_1684 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001187180.1 1854364 D 399739 CDS YP_001187181.1 146306716 5109659 complement(1855366..1855626) 1 NC_009439.1 hypothetical protein 1855626 5109659 Pmen_1685 Pseudomonas mendocina ymp hypothetical protein YP_001187181.1 1855366 R 399739 CDS YP_001187182.1 146306717 5109660 1855905..1856891 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1856891 5109660 Pmen_1686 Pseudomonas mendocina ymp hypothetical protein YP_001187182.1 1855905 D 399739 CDS YP_001187183.1 146306718 5109661 1856879..1857220 1 NC_009439.1 hypothetical protein 1857220 5109661 Pmen_1687 Pseudomonas mendocina ymp hypothetical protein YP_001187183.1 1856879 D 399739 CDS YP_001187184.1 146306719 5109662 complement(1857210..1857827) 1 NC_009439.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) 1857827 5109662 Pmen_1688 Pseudomonas mendocina ymp NAD(P)H dehydrogenase (quinone) YP_001187184.1 1857210 R 399739 CDS YP_001187185.1 146306720 5109663 complement(1857820..1859214) 1 NC_009439.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1859214 5109663 Pmen_1689 Pseudomonas mendocina ymp fumarate hydratase YP_001187185.1 1857820 R 399739 CDS YP_001187186.1 146306721 5109664 complement(1859302..1860312) 1 NC_009439.1 hypothetical protein 1860312 5109664 Pmen_1690 Pseudomonas mendocina ymp hypothetical protein YP_001187186.1 1859302 R 399739 CDS YP_001187187.1 146306722 5109665 1860588..1861085 1 NC_009439.1 hypothetical protein 1861085 5109665 Pmen_1691 Pseudomonas mendocina ymp hypothetical protein YP_001187187.1 1860588 D 399739 CDS YP_001187188.1 146306723 5109666 1861097..1861390 1 NC_009439.1 PFAM: BolA family protein; transcriptional regulator BolA 1861390 5109666 Pmen_1692 Pseudomonas mendocina ymp transcriptional regulator BolA YP_001187188.1 1861097 D 399739 CDS YP_001187189.1 146306724 5109667 1861714..1862652 1 NC_009439.1 PFAM: Rhodanese domain protein; hypothetical protein 1862652 5109667 Pmen_1693 Pseudomonas mendocina ymp hypothetical protein YP_001187189.1 1861714 D 399739 CDS YP_001187190.1 146306725 5109668 1862655..1863287 1 NC_009439.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 1863287 5109668 Pmen_1694 Pseudomonas mendocina ymp DSBA oxidoreductase YP_001187190.1 1862655 D 399739 CDS YP_001187191.1 146306726 5109669 1863280..1865061 1 NC_009439.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1865061 5109669 Pmen_1695 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187191.1 1863280 D 399739 CDS YP_001187192.1 146306727 5109670 1865418..1866500 1 NC_009439.1 TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 4-hydroxyphenylpyruvate dioxygenase 1866500 5109670 Pmen_1696 Pseudomonas mendocina ymp 4-hydroxyphenylpyruvate dioxygenase YP_001187192.1 1865418 D 399739 CDS YP_001187193.1 146306728 5109671 1866505..1867644 1 NC_009439.1 PFAM: homogentisate 1,2-dioxygenase; homogentisate 1,2-dioxygenase 1867644 5109671 Pmen_1697 Pseudomonas mendocina ymp homogentisate 1,2-dioxygenase YP_001187193.1 1866505 D 399739 CDS YP_001187194.1 146306729 5109672 1867860..1868840 1 NC_009439.1 PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 1868840 5109672 Pmen_1698 Pseudomonas mendocina ymp fumarylacetoacetate (FAA) hydrolase YP_001187194.1 1867860 D 399739 CDS YP_001187195.1 146306730 5109673 1868907..1869557 1 NC_009439.1 TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; maleylacetoacetate isomerase 1869557 5109673 Pmen_1699 Pseudomonas mendocina ymp maleylacetoacetate isomerase YP_001187195.1 1868907 D 399739 CDS YP_001187196.1 146306731 5109674 1869679..1871139 1 NC_009439.1 PFAM: sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 1871139 5109674 Pmen_1700 Pseudomonas mendocina ymp sodium:neurotransmitter symporter YP_001187196.1 1869679 D 399739 CDS YP_001187197.1 146306732 5109675 1871430..1873382 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 1873382 5109675 Pmen_1701 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187197.1 1871430 D 399739 CDS YP_001187198.1 146306733 5109676 complement(1873503..1873913) 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1873913 5109676 Pmen_1702 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001187198.1 1873503 R 399739 CDS YP_001187199.1 146306734 5109677 1873976..1874278 1 NC_009439.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1874278 5109677 Pmen_1703 Pseudomonas mendocina ymp antibiotic biosynthesis monooxygenase YP_001187199.1 1873976 D 399739 CDS YP_001187200.1 146306735 5109678 complement(1874290..1875063) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1875063 5109678 Pmen_1704 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187200.1 1874290 R 399739 CDS YP_001187201.1 146306736 5109679 complement(1875245..1875949) 1 NC_009439.1 PFAM: protein of unknown function UPF0066; hypothetical protein 1875949 5109679 Pmen_1705 Pseudomonas mendocina ymp hypothetical protein YP_001187201.1 1875245 R 399739 CDS YP_001187202.1 146306737 5109680 complement(1875959..1876165) 1 NC_009439.1 hypothetical protein 1876165 5109680 Pmen_1706 Pseudomonas mendocina ymp hypothetical protein YP_001187202.1 1875959 R 399739 CDS YP_001187203.1 146306738 5109681 complement(1876209..1876919) 1 NC_009439.1 PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 1876919 5109681 Pmen_1707 Pseudomonas mendocina ymp RNA-binding S4 domain-containing protein YP_001187203.1 1876209 R 399739 CDS YP_001187204.1 146306739 5109682 complement(1876979..1877404) 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1877404 5109682 Pmen_1708 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001187204.1 1876979 R 399739 CDS YP_001187205.1 146306740 5109683 1877578..1878729 1 NC_009439.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 1878729 5109683 Pmen_1709 Pseudomonas mendocina ymp UDP-N-acetylglucosamine 2-epimerase YP_001187205.1 1877578 D 399739 CDS YP_001187206.1 146306741 5109684 1878726..1880900 1 NC_009439.1 PFAM: General secretory system II, protein E domain protein; bacteriophage N4 adsorption protein B 1880900 nfrB 5109684 nfrB Pseudomonas mendocina ymp bacteriophage N4 adsorption protein B YP_001187206.1 1878726 D 399739 CDS YP_001187207.1 146306742 5109685 1880897..1884046 1 NC_009439.1 bacteriophage N4 receptor, outer membrane subunit 1884046 5109685 Pmen_1711 Pseudomonas mendocina ymp bacteriophage N4 receptor, outer membrane subunit YP_001187207.1 1880897 D 399739 CDS YP_001187208.1 146306743 5109686 1884046..1884882 1 NC_009439.1 hypothetical protein 1884882 5109686 Pmen_1712 Pseudomonas mendocina ymp hypothetical protein YP_001187208.1 1884046 D 399739 CDS YP_001187209.1 146306744 5109687 complement(1884936..1886258) 1 NC_009439.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 1886258 rimO 5109687 rimO Pseudomonas mendocina ymp 30S ribosomal protein S12 methylthiotransferase YP_001187209.1 1884936 R 399739 CDS YP_001187210.1 146306745 5109688 complement(1886355..1886903) 1 NC_009439.1 PFAM: cytochrome B561; cytochrome B561 1886903 5109688 Pmen_1714 Pseudomonas mendocina ymp cytochrome B561 YP_001187210.1 1886355 R 399739 CDS YP_001187211.1 146306746 5106569 1887581..1889545 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1889545 5106569 Pmen_1715 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001187211.1 1887581 D 399739 CDS YP_001187212.1 146306747 5109296 complement(1889645..1891033) 1 NC_009439.1 PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; hypothetical protein 1891033 5109296 Pmen_1716 Pseudomonas mendocina ymp hypothetical protein YP_001187212.1 1889645 R 399739 CDS YP_001187213.1 146306748 5109297 complement(1891148..1891459) 1 NC_009439.1 hypothetical protein 1891459 5109297 Pmen_1717 Pseudomonas mendocina ymp hypothetical protein YP_001187213.1 1891148 R 399739 CDS YP_001187214.1 146306749 5109298 complement(1891452..1891844) 1 NC_009439.1 PFAM: protein of unknown function DUF202; hypothetical protein 1891844 5109298 Pmen_1718 Pseudomonas mendocina ymp hypothetical protein YP_001187214.1 1891452 R 399739 CDS YP_001187215.1 146306750 5109299 complement(1891865..1893232) 1 NC_009439.1 PFAM: protein of unknown function DUF1329; hypothetical protein 1893232 5109299 Pmen_1719 Pseudomonas mendocina ymp hypothetical protein YP_001187215.1 1891865 R 399739 CDS YP_001187216.1 146306751 5109300 complement(1893245..1895026) 1 NC_009439.1 PFAM: protein of unknown function DUF1302; hypothetical protein 1895026 5109300 Pmen_1720 Pseudomonas mendocina ymp hypothetical protein YP_001187216.1 1893245 R 399739 CDS YP_001187217.1 146306752 5109301 1895284..1896252 1 NC_009439.1 PFAM: regulatory protein, MarR; regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1896252 5109301 Pmen_1721 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187217.1 1895284 D 399739 CDS YP_001187218.1 146306753 5109302 complement(1896216..1897517) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1897517 5109302 Pmen_1722 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187218.1 1896216 R 399739 CDS YP_001187219.1 146306754 5109303 complement(1897589..1898752) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1898752 5109303 Pmen_1723 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001187219.1 1897589 R 399739 CDS YP_001187220.1 146306755 5109304 complement(1898763..1900310) 1 NC_009439.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1900310 5109304 Pmen_1724 Pseudomonas mendocina ymp AMP-dependent synthetase and ligase YP_001187220.1 1898763 R 399739 CDS YP_001187221.1 146306756 5109305 complement(1900578..1901762) 1 NC_009439.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 1901762 5109305 Pmen_1725 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001187221.1 1900578 R 399739 CDS YP_001187222.1 146306757 5109306 1901995..1903053 1 NC_009439.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1903053 5109306 Pmen_1726 Pseudomonas mendocina ymp DNA polymerase IV YP_001187222.1 1901995 D 399739 CDS YP_001187223.1 146306758 5109307 complement(1903148..1903546) 1 NC_009439.1 PFAM: protein of unknown function DUF306, Meta and HslJ; hypothetical protein 1903546 5109307 Pmen_1727 Pseudomonas mendocina ymp hypothetical protein YP_001187223.1 1903148 R 399739 CDS YP_001187224.1 146306759 5109308 complement(1903551..1903982) 1 NC_009439.1 hypothetical protein 1903982 5109308 Pmen_1728 Pseudomonas mendocina ymp hypothetical protein YP_001187224.1 1903551 R 399739 CDS YP_001187225.1 146306760 5109309 complement(1904010..1905005) 1 NC_009439.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1905005 5109309 Pmen_1729 Pseudomonas mendocina ymp NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase YP_001187225.1 1904010 R 399739 CDS YP_001187226.1 146306761 5109310 complement(1905015..1907765) 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; multi-sensor hybrid histidine kinase 1907765 5109310 Pmen_1730 Pseudomonas mendocina ymp multi-sensor hybrid histidine kinase YP_001187226.1 1905015 R 399739 CDS YP_001187227.1 146306762 5109311 1907883..1908593 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 1908593 5109311 Pmen_1731 Pseudomonas mendocina ymp two component transcriptional regulator YP_001187227.1 1907883 D 399739 CDS YP_001187228.1 146306763 5109312 1908590..1909927 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 1909927 5109312 Pmen_1732 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001187228.1 1908590 D 399739 CDS YP_001187229.1 146306764 5109313 1910027..1910932 1 NC_009439.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1910932 cysM 5109313 cysM Pseudomonas mendocina ymp cysteine synthase B YP_001187229.1 1910027 D 399739 CDS YP_001187230.1 146306765 5109314 1910932..1912284 1 NC_009439.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1912284 rumA 5109314 rumA Pseudomonas mendocina ymp 23S rRNA 5-methyluridine methyltransferase YP_001187230.1 1910932 D 399739 CDS YP_001187231.1 146306766 5109315 1912412..1914655 1 NC_009439.1 TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1914655 5109315 Pmen_1735 Pseudomonas mendocina ymp (p)ppGpp synthetase I SpoT/RelA YP_001187231.1 1912412 D 399739 CDS YP_001187232.1 146306767 5109316 1914668..1915498 1 NC_009439.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1915498 mazG 5109316 mazG Pseudomonas mendocina ymp nucleoside triphosphate pyrophosphohydrolase YP_001187232.1 1914668 D 399739 CDS YP_001187233.1 146306768 5109317 1915675..1916214 1 NC_009439.1 hypothetical protein 1916214 5109317 Pmen_1737 Pseudomonas mendocina ymp hypothetical protein YP_001187233.1 1915675 D 399739 CDS YP_001187234.1 146306769 5109318 complement(1916318..1916590) 1 NC_009439.1 PFAM: Modulator of Rho-dependent transcription termination; transcriptional antiterminator Rof 1916590 5109318 Pmen_1738 Pseudomonas mendocina ymp transcriptional antiterminator Rof YP_001187234.1 1916318 R 399739 CDS YP_001187235.1 146306770 5109319 complement(1916736..1917983) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 1917983 5109319 Pmen_1739 Pseudomonas mendocina ymp outer membrane porin YP_001187235.1 1916736 R 399739 CDS YP_001187236.1 146306771 5109320 1918304..1919443 1 NC_009439.1 hypothetical protein 1919443 5109320 Pmen_1740 Pseudomonas mendocina ymp hypothetical protein YP_001187236.1 1918304 D 399739 CDS YP_001187237.1 146306772 5109321 1919492..1919728 1 NC_009439.1 PFAM: glutaredoxin 2; glutaredoxin 1919728 5109321 Pmen_1741 Pseudomonas mendocina ymp glutaredoxin YP_001187237.1 1919492 D 399739 CDS YP_001187238.1 146306773 5106570 complement(1920001..1920222) 1 NC_009439.1 PFAM: protein of unknown function DUF903; hypothetical protein 1920222 5106570 Pmen_1742 Pseudomonas mendocina ymp hypothetical protein YP_001187238.1 1920001 R 399739 CDS YP_001187239.1 146306774 5109323 complement(1920290..1920895) 1 NC_009439.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1920895 mobA 5109323 mobA Pseudomonas mendocina ymp molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001187239.1 1920290 R 399739 CDS YP_001187240.1 146306775 5109324 1920963..1921502 1 NC_009439.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 1921502 5109324 Pmen_1744 Pseudomonas mendocina ymp molybdenum cofactor biosynthesis protein B YP_001187240.1 1920963 D 399739 CDS YP_001187241.1 146306776 5109325 1921499..1922713 1 NC_009439.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; molybdopterin molybdochelatase 1922713 5109325 Pmen_1745 Pseudomonas mendocina ymp molybdopterin molybdochelatase YP_001187241.1 1921499 D 399739 CDS YP_001187242.1 146306777 5109326 1922863..1923474 1 NC_009439.1 PFAM: NLP/P60 protein; NLP/P60 protein 1923474 5109326 Pmen_1746 Pseudomonas mendocina ymp NLP/P60 protein YP_001187242.1 1922863 D 399739 CDS YP_001187243.1 146306778 5109327 1923559..1924083 1 NC_009439.1 PFAM: NLP/P60 protein; NLP/P60 protein 1924083 5109327 Pmen_1747 Pseudomonas mendocina ymp NLP/P60 protein YP_001187243.1 1923559 D 399739 CDS YP_001187244.1 146306779 5109328 1924091..1924750 1 NC_009439.1 PFAM: O-methyltransferase, family 3; caffeoyl-CoA O-methyltransferase 1924750 5109328 Pmen_1748 Pseudomonas mendocina ymp caffeoyl-CoA O-methyltransferase YP_001187244.1 1924091 D 399739 CDS YP_001187245.1 146306780 5109329 1924757..1925077 1 NC_009439.1 hypothetical protein 1925077 5109329 Pmen_1749 Pseudomonas mendocina ymp hypothetical protein YP_001187245.1 1924757 D 399739 CDS YP_001187246.1 146306781 5109330 1925506..1926117 1 NC_009439.1 catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide; cob(I)yrinic acid a,c-diamide adenosyltransferase 1926117 5109330 Pmen_1750 Pseudomonas mendocina ymp cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001187246.1 1925506 D 399739 CDS YP_001187247.1 146306782 5109331 1926117..1927409 1 NC_009439.1 responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase 1927409 5109331 Pmen_1751 Pseudomonas mendocina ymp cobyrinic acid a,c-diamide synthase YP_001187247.1 1926117 D 399739 CDS YP_001187248.1 146306783 5109332 1927406..1928059 1 NC_009439.1 TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; cob(II)yrinic acid a,c-diamide reductase 1928059 5109332 Pmen_1752 Pseudomonas mendocina ymp cob(II)yrinic acid a,c-diamide reductase YP_001187248.1 1927406 D 399739 CDS YP_001187249.1 146306784 5109333 1928063..1928971 1 NC_009439.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 1928971 cobD 5109333 cobD Pseudomonas mendocina ymp cobalamin biosynthesis protein YP_001187249.1 1928063 D 399739 CDS YP_001187250.1 146306785 5109334 1928964..1929974 1 NC_009439.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 1929974 5109334 Pmen_1754 Pseudomonas mendocina ymp threonine-phosphate decarboxylase YP_001187250.1 1928964 D 399739 CDS YP_001187251.1 146306786 5109335 1929974..1931425 1 NC_009439.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 1931425 5109335 Pmen_1755 Pseudomonas mendocina ymp cobyric acid synthase YP_001187251.1 1929974 D 399739 CDS YP_001187252.1 146306787 5109336 1931494..1932015 1 NC_009439.1 catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase 1932015 cobU 5109336 cobU Pseudomonas mendocina ymp adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase YP_001187252.1 1931494 D 399739 CDS YP_001187253.1 146306788 5109337 1932012..1933067 1 NC_009439.1 catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1933067 cobT 5109337 cobT Pseudomonas mendocina ymp nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001187253.1 1932012 D 399739 CDS YP_001187254.1 146306789 5109338 1933067..1933639 1 NC_009439.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 1933639 5109338 Pmen_1758 Pseudomonas mendocina ymp phosphoglycerate mutase YP_001187254.1 1933067 D 399739 CDS YP_001187255.1 146306790 5109339 1933636..1934367 1 NC_009439.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase 1934367 cobS 5109339 cobS Pseudomonas mendocina ymp cobalamin synthase YP_001187255.1 1933636 D 399739 CDS YP_001187256.1 146306791 5109340 1934441..1934845 1 NC_009439.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 1934845 5109340 Pmen_1760 Pseudomonas mendocina ymp MarR family transcriptional regulator YP_001187256.1 1934441 D 399739 CDS YP_001187257.1 146306792 5109341 1934898..1936103 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 1936103 5109341 Pmen_1761 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187257.1 1934898 D 399739 CDS YP_001187258.1 146306793 5109342 1936288..1936839 1 NC_009439.1 PFAM: glutathione peroxidase; Redoxin domain protein; glutathione peroxidase 1936839 5109342 Pmen_1762 Pseudomonas mendocina ymp glutathione peroxidase YP_001187258.1 1936288 D 399739 CDS YP_001187259.1 146306794 5109343 1936962..1937888 1 NC_009439.1 alpha/beta hydrolase fold-like protein 1937888 5109343 Pmen_1763 Pseudomonas mendocina ymp alpha/beta hydrolase fold-like protein YP_001187259.1 1936962 D 399739 CDS YP_001187260.1 146306795 5109344 1937931..1938989 1 NC_009439.1 PFAM: lipase chaperone; lipase chaperone 1938989 5109344 Pmen_1764 Pseudomonas mendocina ymp lipase chaperone YP_001187260.1 1937931 D 399739 CDS YP_001187261.1 146306796 5109345 1939002..1940762 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase 1940762 5109345 Pmen_1765 Pseudomonas mendocina ymp integral membrane sensor hybrid histidine kinase YP_001187261.1 1939002 D 399739 CDS YP_001187262.1 146306797 5109346 complement(1940767..1941378) 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 1941378 5109346 Pmen_1766 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001187262.1 1940767 R 399739 CDS YP_001187263.1 146306798 5109347 complement(1941443..1942717) 1 NC_009439.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 1942717 5109347 Pmen_1767 Pseudomonas mendocina ymp aromatic hydrocarbon degradation membrane protein YP_001187263.1 1941443 R 399739 CDS YP_001187264.1 146306799 5109348 complement(1942861..1943340) 1 NC_009439.1 hypothetical protein 1943340 5109348 Pmen_1768 Pseudomonas mendocina ymp hypothetical protein YP_001187264.1 1942861 R 399739 CDS YP_001187265.1 146306800 5109349 complement(1943537..1944391) 1 NC_009439.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 1944391 5109349 Pmen_1769 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001187265.1 1943537 R 399739 CDS YP_001187266.1 146306801 5109350 1944489..1945289 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1945289 5109350 Pmen_1770 Pseudomonas mendocina ymp phospholipid/glycerol acyltransferase YP_001187266.1 1944489 D 399739 CDS YP_001187267.1 146306802 5109351 1945464..1946801 1 NC_009439.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1946801 5109351 Pmen_1771 Pseudomonas mendocina ymp glutamate dehydrogenase YP_001187267.1 1945464 D 399739 CDS YP_001187268.1 146306803 5109352 complement(1946851..1947915) 1 NC_009439.1 PFAM: Strictosidine synthase; SMP-30/Gluconolaconase/LRE domain protein; gluconolactonase 1947915 5109352 Pmen_1772 Pseudomonas mendocina ymp gluconolactonase YP_001187268.1 1946851 R 399739 CDS YP_001187269.1 146306804 5109353 1948040..1949173 1 NC_009439.1 TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; ribonuclease D 1949173 5109353 Pmen_1773 Pseudomonas mendocina ymp ribonuclease D YP_001187269.1 1948040 D 399739 CDS YP_001187270.1 146306805 5109354 1949170..1949463 1 NC_009439.1 PFAM: protein of unknown function DUF709; hypothetical protein 1949463 5109354 Pmen_1774 Pseudomonas mendocina ymp hypothetical protein YP_001187270.1 1949170 D 399739 CDS YP_001187271.1 146306806 5109355 1949467..1950399 1 NC_009439.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 1950399 5109355 Pmen_1775 Pseudomonas mendocina ymp NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase YP_001187271.1 1949467 D 399739 CDS YP_001187272.1 146306807 5109356 1950487..1950936 1 NC_009439.1 PFAM: protein of unknown function UPF0153; hypothetical protein 1950936 5109356 Pmen_1776 Pseudomonas mendocina ymp hypothetical protein YP_001187272.1 1950487 D 399739 CDS YP_001187273.1 146306808 5109357 1951004..1952275 1 NC_009439.1 hypothetical protein 1952275 5109357 Pmen_1777 Pseudomonas mendocina ymp hypothetical protein YP_001187273.1 1951004 D 399739 CDS YP_001187274.1 146306809 5109358 complement(1952324..1952674) 1 NC_009439.1 PFAM: HNH endonuclease; SMART: HNH nuclease; hypothetical protein 1952674 5109358 Pmen_1778 Pseudomonas mendocina ymp hypothetical protein YP_001187274.1 1952324 R 399739 CDS YP_001187275.1 146306810 5109359 1952751..1953062 1 NC_009439.1 hypothetical protein 1953062 5109359 Pmen_1779 Pseudomonas mendocina ymp hypothetical protein YP_001187275.1 1952751 D 399739 CDS YP_001187276.1 146306811 5109360 complement(1953091..1953561) 1 NC_009439.1 PFAM: cyclic nucleotide-binding; cyclic nucleotide-binding protein 1953561 5109360 Pmen_1780 Pseudomonas mendocina ymp cyclic nucleotide-binding protein YP_001187276.1 1953091 R 399739 CDS YP_001187277.1 146306812 5109361 complement(1953667..1955703) 1 NC_009439.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; oligopeptidase B 1955703 5109361 Pmen_1781 Pseudomonas mendocina ymp oligopeptidase B YP_001187277.1 1953667 R 399739 CDS YP_001187278.1 146306813 5109362 1955811..1956281 1 NC_009439.1 hypothetical protein 1956281 5109362 Pmen_1782 Pseudomonas mendocina ymp hypothetical protein YP_001187278.1 1955811 D 399739 CDS YP_001187279.1 146306814 5109363 1956338..1956784 1 NC_009439.1 PFAM: histidine triad (HIT) protein; histidine triad (HIT) protein 1956784 5109363 Pmen_1783 Pseudomonas mendocina ymp histidine triad (HIT) protein YP_001187279.1 1956338 D 399739 CDS YP_001187280.1 146306815 5109364 1956789..1957562 1 NC_009439.1 PFAM: glutamine amidotransferase, class-II; glutamine amidotransferase, class-II 1957562 5109364 Pmen_1784 Pseudomonas mendocina ymp glutamine amidotransferase, class-II YP_001187280.1 1956789 D 399739 CDS YP_001187281.1 146306816 5109365 1957576..1958100 1 NC_009439.1 hypothetical protein 1958100 5109365 Pmen_1785 Pseudomonas mendocina ymp hypothetical protein YP_001187281.1 1957576 D 399739 CDS YP_001187282.1 146306817 5109366 1958247..1959293 1 NC_009439.1 hypothetical protein 1959293 5109366 Pmen_1786 Pseudomonas mendocina ymp hypothetical protein YP_001187282.1 1958247 D 399739 CDS YP_001187283.1 146306818 5109367 complement(1959421..1960599) 1 NC_009439.1 hypothetical protein 1960599 5109367 Pmen_1787 Pseudomonas mendocina ymp hypothetical protein YP_001187283.1 1959421 R 399739 CDS YP_001187284.1 146306819 5109368 complement(1960776..1961621) 1 NC_009439.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase 1961621 5109368 Pmen_1788 Pseudomonas mendocina ymp ATPase YP_001187284.1 1960776 R 399739 CDS YP_001187285.1 146306820 5109369 complement(1961781..1962875) 1 NC_009439.1 hypothetical protein 1962875 5109369 Pmen_1789 Pseudomonas mendocina ymp hypothetical protein YP_001187285.1 1961781 R 399739 CDS YP_001187286.1 146306821 5109370 1962991..1963962 1 NC_009439.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase 1963962 5109370 Pmen_1790 Pseudomonas mendocina ymp cysteine synthase YP_001187286.1 1962991 D 399739 CDS YP_001187287.1 146306822 5109371 complement(1964196..1965086) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1965086 5109371 Pmen_1791 Pseudomonas mendocina ymp hypothetical protein YP_001187287.1 1964196 R 399739 CDS YP_001187288.1 146306823 5109372 1965296..1967014 1 NC_009439.1 catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol; bifunctional isocitrate dehydrogenase kinase/phosphatase protein 1967014 aceK 5109372 aceK Pseudomonas mendocina ymp bifunctional isocitrate dehydrogenase kinase/phosphatase protein YP_001187288.1 1965296 D 399739 CDS YP_001187289.1 146306824 5109373 complement(1967252..1967983) 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1967983 5109373 Pmen_1793 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001187289.1 1967252 R 399739 CDS YP_001187290.1 146306825 5109924 complement(1968177..1969517) 1 NC_009439.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 1969517 5109924 Pmen_1794 Pseudomonas mendocina ymp cytosine/purines uracil thiamine allantoin permease YP_001187290.1 1968177 R 399739 CDS YP_001187291.1 146306826 5109925 complement(1969623..1971257) 1 NC_009439.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; hypothetical protein 1971257 5109925 Pmen_1795 Pseudomonas mendocina ymp hypothetical protein YP_001187291.1 1969623 R 399739 CDS YP_001187292.1 146306827 5109926 complement(1971297..1972691) 1 NC_009439.1 PFAM: nucleoside recognition domain protein; nucleoside recognition domain-containing protein 1972691 5109926 Pmen_1796 Pseudomonas mendocina ymp nucleoside recognition domain-containing protein YP_001187292.1 1971297 R 399739 CDS YP_001187293.1 146306828 5109927 complement(1972770..1973729) 1 NC_009439.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; putative agmatinase 1973729 5109927 Pmen_1797 Pseudomonas mendocina ymp putative agmatinase YP_001187293.1 1972770 R 399739 CDS YP_001187294.1 146306829 5109928 1973972..1975534 1 NC_009439.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 1975534 5109928 Pmen_1798 Pseudomonas mendocina ymp diguanylate phosphodiesterase YP_001187294.1 1973972 D 399739 CDS YP_001187295.1 146306830 5109929 1975544..1976443 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1976443 5109929 Pmen_1799 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187295.1 1975544 D 399739 CDS YP_001187296.1 146306831 5109930 1976563..1978128 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer 1978128 5109930 Pmen_1800 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187296.1 1976563 D 399739 CDS YP_001187297.1 146306832 5109931 1978315..1978908 1 NC_009439.1 PFAM: DTW domain containing protein; DTW domain-containing protein 1978908 5109931 Pmen_1801 Pseudomonas mendocina ymp DTW domain-containing protein YP_001187297.1 1978315 D 399739 CDS YP_001187298.1 146306833 5109932 complement(1979108..1980466) 1 NC_009439.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein 1980466 5109932 Pmen_1802 Pseudomonas mendocina ymp HlyD family type I secretion membrane fusion protein YP_001187298.1 1979108 R 399739 CDS YP_001187299.1 146306834 5109933 complement(1980479..1982629) 1 NC_009439.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1982629 5109933 Pmen_1803 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187299.1 1980479 R 399739 CDS YP_001187300.1 146306835 5109934 complement(1982663..1984018) 1 NC_009439.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 1984018 5109934 Pmen_1804 Pseudomonas mendocina ymp TolC family type I secretion outer membrane protein YP_001187300.1 1982663 R 399739 CDS YP_001187301.1 146306836 5109935 complement(1984366..1984632) 1 NC_009439.1 hypothetical protein 1984632 5109935 Pmen_1805 Pseudomonas mendocina ymp hypothetical protein YP_001187301.1 1984366 R 399739 CDS YP_001187302.1 146306837 5109936 1984657..1994211 1 NC_009439.1 PFAM: Hemolysin-type calcium-binding region; von Willebrand factor, type A; hemolysin-type calcium-binding protein 1994211 5109936 Pmen_1806 Pseudomonas mendocina ymp hemolysin-type calcium-binding protein YP_001187302.1 1984657 D 399739 CDS YP_001187303.1 146306838 5109937 1994334..1994675 1 NC_009439.1 hypothetical protein 1994675 5109937 Pmen_1807 Pseudomonas mendocina ymp hypothetical protein YP_001187303.1 1994334 D 399739 CDS YP_001187304.1 146306839 5109938 complement(1994731..1996683) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; diguanylate cyclase/phosphodiesterase 1996683 5109938 Pmen_1808 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001187304.1 1994731 R 399739 CDS YP_001187305.1 146306840 5109939 complement(1996869..1997549) 1 NC_009439.1 hypothetical protein 1997549 5109939 Pmen_1809 Pseudomonas mendocina ymp hypothetical protein YP_001187305.1 1996869 R 399739 CDS YP_001187306.1 146306841 5109940 complement(1997712..1998110) 1 NC_009439.1 PFAM: protein of unknown function DUF454; hypothetical protein 1998110 5109940 Pmen_1810 Pseudomonas mendocina ymp hypothetical protein YP_001187306.1 1997712 R 399739 CDS YP_001187307.1 146306842 5109941 complement(1998160..1998747) 1 NC_009439.1 TIGRFAM: yecA family protein; yecA family protein 1998747 5109941 Pmen_1811 Pseudomonas mendocina ymp yecA family protein YP_001187307.1 1998160 R 399739 CDS YP_001187308.1 146306843 5109942 1998913..2001045 1 NC_009439.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 2001045 5109942 Pmen_1812 Pseudomonas mendocina ymp ATP-dependent DNA helicase RecQ YP_001187308.1 1998913 D 399739 CDS YP_001187309.1 146306844 5109943 2001127..2002287 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2002287 5109943 Pmen_1813 Pseudomonas mendocina ymp diguanylate cyclase YP_001187309.1 2001127 D 399739 CDS YP_001187310.1 146306845 5109944 2002434..2002865 1 NC_009439.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2002865 5109944 Pmen_1814 Pseudomonas mendocina ymp MarR family transcriptional regulator YP_001187310.1 2002434 D 399739 CDS YP_001187311.1 146306846 5109945 2003171..2005249 1 NC_009439.1 PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM 2005249 5109945 Pmen_1815 Pseudomonas mendocina ymp peptidoglycan-binding LysM YP_001187311.1 2003171 D 399739 CDS YP_001187312.1 146306847 5109946 complement(2005333..2007519) 1 NC_009439.1 PFAM: surface antigen (D15); Patatin; surface antigen variable number repeat protein; patatin 2007519 5109946 Pmen_1816 Pseudomonas mendocina ymp patatin YP_001187312.1 2005333 R 399739 CDS YP_001187313.1 146306848 5109947 2007591..2007872 1 NC_009439.1 TIGRFAM: conserved hypothetical selenoprotein; PFAM: Selenoprotein W-related; putative selenoprotein 2007872 5109947 Pmen_1817 Pseudomonas mendocina ymp putative selenoprotein YP_001187313.1 2007591 D 399739 CDS YP_001187314.1 146306849 5109948 complement(2007930..2008781) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2008781 5109948 Pmen_1818 Pseudomonas mendocina ymp hypothetical protein YP_001187314.1 2007930 R 399739 CDS YP_001187315.1 146306850 5109949 complement(2008778..2009113) 1 NC_009439.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; export-related chaperone CsaA 2009113 5109949 Pmen_1819 Pseudomonas mendocina ymp export-related chaperone CsaA YP_001187315.1 2008778 R 399739 CDS YP_001187316.1 146306851 5109950 complement(2009330..2010076) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2010076 5109950 Pmen_1820 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187316.1 2009330 R 399739 CDS YP_001187317.1 146306852 5109951 2010212..2011033 1 NC_009439.1 PFAM: metallophosphoesterase; metallophosphoesterase 2011033 5109951 Pmen_1821 Pseudomonas mendocina ymp metallophosphoesterase YP_001187317.1 2010212 D 399739 CDS YP_001187318.1 146306853 5109952 2011030..2012067 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 2012067 5109952 Pmen_1822 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001187318.1 2011030 D 399739 CDS YP_001187319.1 146306854 5109953 complement(2012122..2013510) 1 NC_009439.1 PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; MASE2 domain protein; putative adenylate/guanylate cyclase 2013510 5109953 Pmen_1823 Pseudomonas mendocina ymp putative adenylate/guanylate cyclase YP_001187319.1 2012122 R 399739 CDS YP_001187320.1 146306855 5109954 complement(2013776..2014093) 1 NC_009439.1 hypothetical protein 2014093 5109954 Pmen_1824 Pseudomonas mendocina ymp hypothetical protein YP_001187320.1 2013776 R 399739 CDS YP_001187321.1 146306856 5109955 2014224..2015237 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2015237 5109955 Pmen_1825 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187321.1 2014224 D 399739 CDS YP_001187322.1 146306857 5109956 complement(2015253..2016704) 1 NC_009439.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; TrkH family potassium uptake protein 2016704 5109956 Pmen_1826 Pseudomonas mendocina ymp TrkH family potassium uptake protein YP_001187322.1 2015253 R 399739 CDS YP_001187323.1 146306858 5109957 2017001..2017372 1 NC_009439.1 PFAM: protein of unknown function UPF0153; hypothetical protein 2017372 5109957 Pmen_1827 Pseudomonas mendocina ymp hypothetical protein YP_001187323.1 2017001 D 399739 CDS YP_001187324.1 146306859 5109958 2017430..2017990 1 NC_009439.1 PFAM: nitroreductase; nitroreductase 2017990 5109958 Pmen_1828 Pseudomonas mendocina ymp nitroreductase YP_001187324.1 2017430 D 399739 CDS YP_001187325.1 146306860 5109959 complement(2018025..2019356) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2019356 5109959 Pmen_1829 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001187325.1 2018025 R 399739 CDS YP_001187326.1 146306861 5109960 complement(2019422..2019835) 1 NC_009439.1 PFAM: protein of unknown function, Spy-related; hypothetical protein 2019835 5109960 Pmen_1830 Pseudomonas mendocina ymp hypothetical protein YP_001187326.1 2019422 R 399739 CDS YP_001187327.1 146306862 5109961 complement(2019976..2020653) 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2020653 5109961 Pmen_1831 Pseudomonas mendocina ymp two component transcriptional regulator YP_001187327.1 2019976 R 399739 CDS YP_001187328.1 146306863 5109962 complement(2020657..2021028) 1 NC_009439.1 hypothetical protein 2021028 5109962 Pmen_1832 Pseudomonas mendocina ymp hypothetical protein YP_001187328.1 2020657 R 399739 CDS YP_001187329.1 146306864 5109963 complement(2021067..2021366) 1 NC_009439.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 2021366 5109963 Pmen_1833 Pseudomonas mendocina ymp YciI-like protein YP_001187329.1 2021067 R 399739 CDS YP_001187330.1 146306865 5109964 2021439..2022350 1 NC_009439.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; phosphotransferase domain-containing protein 2022350 5109964 Pmen_1834 Pseudomonas mendocina ymp phosphotransferase domain-containing protein YP_001187330.1 2021439 D 399739 CDS YP_001187331.1 146306866 5109965 2022322..2022990 1 NC_009439.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; Sua5/YciO/YrdC/YwlC family protein 2022990 5109965 Pmen_1835 Pseudomonas mendocina ymp Sua5/YciO/YrdC/YwlC family protein YP_001187331.1 2022322 D 399739 CDS YP_001187332.1 146306867 5109966 complement(2023038..2023391) 1 NC_009439.1 hypothetical protein 2023391 5109966 Pmen_1836 Pseudomonas mendocina ymp hypothetical protein YP_001187332.1 2023038 R 399739 CDS YP_001187333.1 146306868 5109967 2023561..2024775 1 NC_009439.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 2024775 5109967 Pmen_1837 Pseudomonas mendocina ymp tryptophanyl-tRNA synthetase YP_001187333.1 2023561 D 399739 CDS YP_001187334.1 146306869 5109968 2024789..2025613 1 NC_009439.1 PFAM: chromosome segregation and condensation protein ScpA; condensin subunit ScpA 2025613 5109968 Pmen_1838 Pseudomonas mendocina ymp condensin subunit ScpA YP_001187334.1 2024789 D 399739 CDS YP_001187335.1 146306870 5109969 2025610..2026404 1 NC_009439.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; condensin subunit ScpB 2026404 5109969 Pmen_1839 Pseudomonas mendocina ymp condensin subunit ScpB YP_001187335.1 2025610 D 399739 CDS YP_001187336.1 146306871 5109970 2026501..2026683 1 NC_009439.1 PFAM: protein of unknown function DUF1289; hypothetical protein 2026683 5109970 Pmen_1840 Pseudomonas mendocina ymp hypothetical protein YP_001187336.1 2026501 D 399739 CDS YP_001187337.1 146306872 5109971 2026864..2028021 1 NC_009439.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase B 2028021 5109971 Pmen_1841 Pseudomonas mendocina ymp ribosomal large subunit pseudouridine synthase B YP_001187337.1 2026864 D 399739 CDS YP_001187338.1 146306873 5109972 complement(2028079..2029005) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2029005 5109972 Pmen_1842 Pseudomonas mendocina ymp diguanylate cyclase YP_001187338.1 2028079 R 399739 CDS YP_001187339.1 146306874 5109973 complement(2029245..2030024) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2030024 5109973 Pmen_1843 Pseudomonas mendocina ymp short chain dehydrogenase YP_001187339.1 2029245 R 399739 CDS YP_001187340.1 146306875 5109974 complement(2030051..2030722) 1 NC_009439.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 2030722 5109974 Pmen_1844 Pseudomonas mendocina ymp phosphoglycolate phosphatase YP_001187340.1 2030051 R 399739 CDS YP_001187341.1 146306876 5109975 complement(2030722..2031426) 1 NC_009439.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 2031426 5109975 Pmen_1845 Pseudomonas mendocina ymp 3-demethylubiquinone-9 3-methyltransferase YP_001187341.1 2030722 R 399739 CDS YP_001187342.1 146306877 5109976 complement(2031548..2032867) 1 NC_009439.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 2032867 5109976 Pmen_1846 Pseudomonas mendocina ymp N-ethylammeline chlorohydrolase YP_001187342.1 2031548 R 399739 CDS YP_001187343.1 146306878 5109977 2033027..2034103 1 NC_009439.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 2034103 mtnA 5109977 mtnA Pseudomonas mendocina ymp methylthioribose-1-phosphate isomerase YP_001187343.1 2033027 D 399739 CDS YP_001187344.1 146306879 5109978 2034329..2037097 1 NC_009439.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 2037097 5109978 Pmen_1848 Pseudomonas mendocina ymp DNA gyrase subunit A YP_001187344.1 2034329 D 399739 CDS YP_001187345.1 146306880 5109979 2037216..2038301 1 NC_009439.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 2038301 5109979 Pmen_1849 Pseudomonas mendocina ymp phosphoserine aminotransferase YP_001187345.1 2037216 D 399739 CDS YP_001187346.1 146306881 5109980 2038303..2039397 1 NC_009439.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; prephenate dehydratase 2039397 5109980 Pmen_1850 Pseudomonas mendocina ymp prephenate dehydratase YP_001187346.1 2038303 D 399739 CDS YP_001187347.1 146306882 5109981 2039485..2040594 1 NC_009439.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2040594 5109981 Pmen_1851 Pseudomonas mendocina ymp histidinol-phosphate aminotransferase YP_001187347.1 2039485 D 399739 CDS YP_001187348.1 146306883 5109982 2040591..2042831 1 NC_009439.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 2042831 5109982 Pmen_1852 Pseudomonas mendocina ymp bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase YP_001187348.1 2040591 D 399739 CDS YP_001187349.1 146306884 5109983 2042828..2043493 1 NC_009439.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2043493 cmk 5109983 cmk Pseudomonas mendocina ymp cytidylate kinase YP_001187349.1 2042828 D 399739 CDS YP_001187350.1 146306885 5109984 2043641..2045323 1 NC_009439.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2045323 rpsA 5109984 rpsA Pseudomonas mendocina ymp 30S ribosomal protein S1 YP_001187350.1 2043641 D 399739 CDS YP_001187351.1 146306886 5109985 2045735..2046022 1 NC_009439.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 2046022 ihfB 5109985 ihfB Pseudomonas mendocina ymp integration host factor subunit beta YP_001187351.1 2045735 D 399739 CDS YP_001187352.1 146306887 5109986 2046242..2047708 1 NC_009439.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 2047708 5109986 Pmen_1856 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001187352.1 2046242 D 399739 CDS YP_001187353.1 146306888 5109987 2047730..2049046 1 NC_009439.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 2049046 5109987 Pmen_1857 Pseudomonas mendocina ymp UDP-glucose/GDP-mannose dehydrogenase YP_001187353.1 2047730 D 399739 CDS YP_001187354.1 146306889 5109988 2049108..2050064 1 NC_009439.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; oxidoreductase domain-containing protein 2050064 5109988 Pmen_1858 Pseudomonas mendocina ymp oxidoreductase domain-containing protein YP_001187354.1 2049108 D 399739 CDS YP_001187355.1 146306890 5109989 2050069..2050653 1 NC_009439.1 Serine acetyltransferase-like protein 2050653 5109989 Pmen_1859 Pseudomonas mendocina ymp Serine acetyltransferase-like protein YP_001187355.1 2050069 D 399739 CDS YP_001187356.1 146306891 5109990 2050650..2051738 1 NC_009439.1 PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; DegT/DnrJ/EryC1/StrS aminotransferase 2051738 5109990 Pmen_1860 Pseudomonas mendocina ymp DegT/DnrJ/EryC1/StrS aminotransferase YP_001187356.1 2050650 D 399739 CDS YP_001187357.1 146306892 5109991 2051770..2053533 1 NC_009439.1 PFAM: Citrate transporter; TrkA-C domain protein; citrate transporter 2053533 5109991 Pmen_1861 Pseudomonas mendocina ymp citrate transporter YP_001187357.1 2051770 D 399739 CDS YP_001187358.1 146306893 5109992 2053569..2054195 1 NC_009439.1 PFAM: adenylylsulfate kinase; adenylylsulfate kinase 2054195 5109992 Pmen_1862 Pseudomonas mendocina ymp adenylylsulfate kinase YP_001187358.1 2053569 D 399739 CDS YP_001187359.1 146306894 5109993 2054197..2055438 1 NC_009439.1 PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2055438 5109993 Pmen_1863 Pseudomonas mendocina ymp polysaccharide biosynthesis protein YP_001187359.1 2054197 D 399739 CDS YP_001187360.1 146306895 5109994 complement(2055683..2055952) 1 NC_009439.1 hypothetical protein 2055952 5109994 Pmen_1864 Pseudomonas mendocina ymp hypothetical protein YP_001187360.1 2055683 R 399739 CDS YP_001187361.1 146306896 5109995 2056102..2056938 1 NC_009439.1 hypothetical protein 2056938 5109995 Pmen_1865 Pseudomonas mendocina ymp hypothetical protein YP_001187361.1 2056102 D 399739 CDS YP_001187362.1 146306897 5106571 complement(2057754..2059055) 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2059055 5106571 Pmen_1867 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001187362.1 2057754 R 399739 CDS YP_001187363.1 146306898 5109997 2059770..2060648 1 NC_009439.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2060648 5109997 Pmen_1868 Pseudomonas mendocina ymp glycosyl transferase family protein YP_001187363.1 2059770 D 399739 CDS YP_001187364.1 146306899 5109998 2060651..2061886 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 2061886 5109998 Pmen_1869 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001187364.1 2060651 D 399739 CDS YP_001187365.1 146306900 5109999 2061888..2062745 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 2062745 5109999 Pmen_1870 Pseudomonas mendocina ymp dTDP-4-dehydrorhamnose reductase YP_001187365.1 2061888 D 399739 CDS YP_001187366.1 146306901 5110000 2062780..2063547 1 NC_009439.1 hypothetical protein 2063547 5110000 Pmen_1871 Pseudomonas mendocina ymp hypothetical protein YP_001187366.1 2062780 D 399739 CDS YP_001187367.1 146306902 5110001 2063547..2064557 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; Polysaccharide biosynthesis C-terminal domain protein; polysaccharide biosynthesis protein CapD 2064557 5110001 Pmen_1872 Pseudomonas mendocina ymp polysaccharide biosynthesis protein CapD YP_001187367.1 2063547 D 399739 CDS YP_001187368.1 146306903 5110002 2064550..2065677 1 NC_009439.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2065677 5110002 Pmen_1873 Pseudomonas mendocina ymp UDP-N-acetylglucosamine 2-epimerase YP_001187368.1 2064550 D 399739 CDS YP_001187369.1 146306904 5110003 2065680..2066642 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 2066642 5110003 Pmen_1874 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001187369.1 2065680 D 399739 CDS YP_001187370.1 146306905 5110004 2066639..2067655 1 NC_009439.1 PFAM: glycosyl transferase, family 4; glycosyl transferase family protein 2067655 5110004 Pmen_1875 Pseudomonas mendocina ymp glycosyl transferase family protein YP_001187370.1 2066639 D 399739 CDS YP_001187371.1 146306906 5110005 2067652..2068239 1 NC_009439.1 hypothetical protein 2068239 5110005 Pmen_1876 Pseudomonas mendocina ymp hypothetical protein YP_001187371.1 2067652 D 399739 CDS YP_001187372.1 146306907 5110006 2068397..2069698 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2069698 5110006 Pmen_1877 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001187372.1 2068397 D 399739 CDS YP_001187373.1 146306908 5110007 2069808..2071676 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; polysaccharide biosynthesis protein CapD 2071676 5110007 Pmen_1878 Pseudomonas mendocina ymp polysaccharide biosynthesis protein CapD YP_001187373.1 2069808 D 399739 CDS YP_001187374.1 146306909 5110008 2071766..2072089 1 NC_009439.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; helix-hairpin-helix repeat-containing competence protein ComEA 2072089 5110008 Pmen_1879 Pseudomonas mendocina ymp helix-hairpin-helix repeat-containing competence protein ComEA YP_001187374.1 2071766 D 399739 CDS YP_001187375.1 146306910 5106572 complement(2072456..2073262) 1 NC_009439.1 hypothetical protein 2073262 5106572 Pmen_1880 Pseudomonas mendocina ymp hypothetical protein YP_001187375.1 2072456 R 399739 CDS YP_001187376.1 146306911 5110010 complement(2073299..2074291) 1 NC_009439.1 lysophospholipase-like protein 2074291 5110010 Pmen_1881 Pseudomonas mendocina ymp lysophospholipase-like protein YP_001187376.1 2073299 R 399739 CDS YP_001187377.1 146306912 5110011 2074415..2075506 1 NC_009439.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2075506 5110011 Pmen_1882 Pseudomonas mendocina ymp chorismate synthase YP_001187377.1 2074415 D 399739 CDS YP_001187378.1 146306913 5110012 2075592..2076764 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2076764 5110012 Pmen_1883 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001187378.1 2075592 D 399739 CDS YP_001187379.1 146306914 5110013 2076761..2077297 1 NC_009439.1 hypothetical protein 2077297 5110013 Pmen_1884 Pseudomonas mendocina ymp hypothetical protein YP_001187379.1 2076761 D 399739 CDS YP_001187380.1 146306915 5110014 2077365..2077556 1 NC_009439.1 hypothetical protein 2077556 5110014 Pmen_1885 Pseudomonas mendocina ymp hypothetical protein YP_001187380.1 2077365 D 399739 CDS YP_001187381.1 146306916 5110015 2077517..2078110 1 NC_009439.1 PFAM: Phosphoglycerate mutase; putative phosphohistidine phosphatase SixA 2078110 5110015 Pmen_1886 Pseudomonas mendocina ymp putative phosphohistidine phosphatase SixA YP_001187381.1 2077517 D 399739 CDS YP_001187382.1 146306917 5110016 complement(2078132..2078629) 1 NC_009439.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylguanine DNA methyltransferase, ribonuclease domain protein; methylated-DNA--protein-cysteine methyltransferase 2078629 5110016 Pmen_1887 Pseudomonas mendocina ymp methylated-DNA--protein-cysteine methyltransferase YP_001187382.1 2078132 R 399739 CDS YP_001187383.1 146306918 5110017 complement(2078634..2079512) 1 NC_009439.1 PFAM: HhH-GPD family protein; AlkA domain protein; alcohol dehydrogenase 2079512 5110017 Pmen_1888 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001187383.1 2078634 R 399739 CDS YP_001187384.1 146306919 5110018 complement(2079755..2080837) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2080837 5110018 Pmen_1889 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187384.1 2079755 R 399739 CDS YP_001187385.1 146306920 5110019 2080870..2082345 1 NC_009439.1 flavoprotein involved in K+ transport-like protein 2082345 5110019 Pmen_1890 Pseudomonas mendocina ymp flavoprotein involved in K+ transport-like protein YP_001187385.1 2080870 D 399739 CDS YP_001187386.1 146306921 5110020 2082329..2083258 1 NC_009439.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 2083258 5110020 Pmen_1891 Pseudomonas mendocina ymp alpha/beta hydrolase domain-containing protein YP_001187386.1 2082329 D 399739 CDS YP_001187387.1 146306922 5110021 2083258..2084019 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2084019 5110021 Pmen_1892 Pseudomonas mendocina ymp short chain dehydrogenase YP_001187387.1 2083258 D 399739 CDS YP_001187388.1 146306923 5110022 2084286..2084630 1 NC_009439.1 PFAM: protein of unknown function DUF1260; hypothetical protein 2084630 5110022 Pmen_1893 Pseudomonas mendocina ymp hypothetical protein YP_001187388.1 2084286 D 399739 CDS YP_001187389.1 146306924 5106573 complement(2085481..2086017) 1 NC_009439.1 PFAM: DinB family protein; DinB family protein 2086017 5106573 Pmen_1895 Pseudomonas mendocina ymp DinB family protein YP_001187389.1 2085481 R 399739 CDS YP_001187390.1 146306925 5110024 complement(2086043..2086603) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2086603 5110024 Pmen_1896 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001187390.1 2086043 R 399739 CDS YP_001187391.1 146306926 5110025 complement(2086629..2087330) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2087330 5110025 Pmen_1897 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187391.1 2086629 R 399739 CDS YP_001187392.1 146306927 5110026 complement(2087573..2087935) 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2087935 5110026 Pmen_1898 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001187392.1 2087573 R 399739 CDS YP_001187393.1 146306928 5110027 complement(2088029..2088775) 1 NC_009439.1 hypothetical protein 2088775 5110027 Pmen_1899 Pseudomonas mendocina ymp hypothetical protein YP_001187393.1 2088029 R 399739 CDS YP_001187394.1 146306929 5110028 complement(2089212..2089718) 1 NC_009439.1 hypothetical protein 2089718 5110028 Pmen_1900 Pseudomonas mendocina ymp hypothetical protein YP_001187394.1 2089212 R 399739 CDS YP_001187395.1 146306930 5110029 complement(2089804..2090124) 1 NC_009439.1 PFAM: protein of unknown function DUF1330; hypothetical protein 2090124 5110029 Pmen_1901 Pseudomonas mendocina ymp hypothetical protein YP_001187395.1 2089804 R 399739 CDS YP_001187396.1 146306931 5110030 complement(2090316..2091881) 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer 2091881 5110030 Pmen_1902 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187396.1 2090316 R 399739 CDS YP_001187397.1 146306932 5110031 complement(2092058..2094799) 1 NC_009439.1 catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2094799 acnA 5110031 acnA Pseudomonas mendocina ymp aconitate hydratase YP_001187397.1 2092058 R 399739 CDS YP_001187398.1 146306933 5110032 2095047..2096102 1 NC_009439.1 putative RNA 2'-O-ribose methyltransferase 2096102 5110032 Pmen_1904 Pseudomonas mendocina ymp putative RNA 2'-O-ribose methyltransferase YP_001187398.1 2095047 D 399739 CDS YP_001187399.1 146306934 5110033 2096319..2096570 1 NC_009439.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 2096570 5110033 Pmen_1905 Pseudomonas mendocina ymp sulfur transfer protein SirA YP_001187399.1 2096319 D 399739 CDS YP_001187400.1 146306935 5110034 complement(2096662..2097735) 1 NC_009439.1 hypothetical protein 2097735 5110034 Pmen_1906 Pseudomonas mendocina ymp hypothetical protein YP_001187400.1 2096662 R 399739 CDS YP_001187401.1 146306936 5110035 complement(2097777..2099150) 1 NC_009439.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein 2099150 5110035 Pmen_1907 Pseudomonas mendocina ymp MATE efflux family protein YP_001187401.1 2097777 R 399739 CDS YP_001187402.1 146306937 5110036 2099301..2100431 1 NC_009439.1 Required for the de novo synthesis of pyroxidine via the pdxA branch; catalyzes the formation of 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate from erythronate-4-phosphate; erythronate-4-phosphate dehydrogenase 2100431 5110036 Pmen_1908 Pseudomonas mendocina ymp erythronate-4-phosphate dehydrogenase YP_001187402.1 2099301 D 399739 CDS YP_001187403.1 146306938 5110037 2100597..2101082 1 NC_009439.1 PFAM: glutathione peroxidase; peroxiredoxin 2101082 5110037 Pmen_1909 Pseudomonas mendocina ymp peroxiredoxin YP_001187403.1 2100597 D 399739 CDS YP_001187404.1 146306939 5110038 2101079..2101537 1 NC_009439.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2101537 5110038 Pmen_1910 Pseudomonas mendocina ymp MarR family transcriptional regulator YP_001187404.1 2101079 D 399739 CDS YP_001187405.1 146306940 5110039 complement(2101527..2103890) 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase 2103890 5110039 Pmen_1911 Pseudomonas mendocina ymp integral membrane sensor hybrid histidine kinase YP_001187405.1 2101527 R 399739 CDS YP_001187406.1 146306941 5110040 2103957..2104847 1 NC_009439.1 PFAM: protein of unknown function DUF815; hypothetical protein 2104847 5110040 Pmen_1912 Pseudomonas mendocina ymp hypothetical protein YP_001187406.1 2103957 D 399739 CDS YP_001187407.1 146306942 5110041 2104844..2105326 1 NC_009439.1 PFAM: GAF domain protein; putative GAF sensor protein 2105326 5110041 Pmen_1913 Pseudomonas mendocina ymp putative GAF sensor protein YP_001187407.1 2104844 D 399739 CDS YP_001187408.1 146306943 5110042 complement(2105453..2106115) 1 NC_009439.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 2106115 5110042 Pmen_1914 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001187408.1 2105453 R 399739 CDS YP_001187409.1 146306944 5110043 complement(2106168..2106935) 1 NC_009439.1 hypothetical protein 2106935 5110043 Pmen_1915 Pseudomonas mendocina ymp hypothetical protein YP_001187409.1 2106168 R 399739 CDS YP_001187410.1 146306945 5106577 complement(2107641..2108048) 1 NC_009439.1 hypothetical protein 2108048 5106577 Pmen_1916 Pseudomonas mendocina ymp hypothetical protein YP_001187410.1 2107641 R 399739 CDS YP_001187411.1 146306946 5110045 complement(2108149..2110596) 1 NC_009439.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2110596 fadE 5110045 fadE Pseudomonas mendocina ymp acyl-CoA dehydrogenase YP_001187411.1 2108149 R 399739 CDS YP_001187412.1 146306947 5110046 2110737..2111399 1 NC_009439.1 cysteine protease-like protein 2111399 5110046 Pmen_1918 Pseudomonas mendocina ymp cysteine protease-like protein YP_001187412.1 2110737 D 399739 CDS YP_001187413.1 146306948 5110047 2111554..2112486 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2112486 5110047 Pmen_1919 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187413.1 2111554 D 399739 CDS YP_001187414.1 146306949 5110048 2112483..2113277 1 NC_009439.1 PFAM: ABC-2 type transporter; ABC transporter 2113277 5110048 Pmen_1920 Pseudomonas mendocina ymp ABC transporter YP_001187414.1 2112483 D 399739 CDS YP_001187415.1 146306950 5110049 2113369..2114391 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2114391 5110049 Pmen_1921 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001187415.1 2113369 D 399739 CDS YP_001187416.1 146306951 5110050 2114388..2117456 1 NC_009439.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 2117456 5110050 Pmen_1922 Pseudomonas mendocina ymp acriflavin resistance protein YP_001187416.1 2114388 D 399739 CDS YP_001187417.1 146306952 5110051 2117629..2118459 1 NC_009439.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2118459 queF 5110051 queF Pseudomonas mendocina ymp 7-cyano-7-deazaguanine reductase YP_001187417.1 2117629 D 399739 CDS YP_001187418.1 146306953 5110052 complement(2118515..2118781) 1 NC_009439.1 hypothetical protein 2118781 5110052 Pmen_1924 Pseudomonas mendocina ymp hypothetical protein YP_001187418.1 2118515 R 399739 CDS YP_001187419.1 146306954 5110053 complement(2118900..2119619) 1 NC_009439.1 phosphatase/phosphohexomutase-like protein 2119619 5110053 Pmen_1925 Pseudomonas mendocina ymp phosphatase/phosphohexomutase-like protein YP_001187419.1 2118900 R 399739 CDS YP_001187420.1 146306955 5110054 complement(2119682..2120092) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 2120092 5110054 Pmen_1926 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001187420.1 2119682 R 399739 CDS YP_001187421.1 146306956 5110055 2120199..2120903 1 NC_009439.1 PFAM: VacJ family lipoprotein; VacJ family lipoprotein 2120903 5110055 Pmen_1927 Pseudomonas mendocina ymp VacJ family lipoprotein YP_001187421.1 2120199 D 399739 CDS YP_001187422.1 146306957 5110056 complement(2120959..2121258) 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 2121258 5110056 Pmen_1928 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001187422.1 2120959 R 399739 CDS YP_001187423.1 146306958 5110057 2121472..2122656 1 NC_009439.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; response regulator receiver protein 2122656 5110057 Pmen_1929 Pseudomonas mendocina ymp response regulator receiver protein YP_001187423.1 2121472 D 399739 CDS YP_001187424.1 146306959 5110058 2122653..2123147 1 NC_009439.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 2123147 5110058 Pmen_1930 Pseudomonas mendocina ymp anti-sigma-factor antagonist YP_001187424.1 2122653 D 399739 CDS YP_001187425.1 146306960 5110059 complement(2123286..2124212) 1 NC_009439.1 TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase B 2124212 5110059 Pmen_1931 Pseudomonas mendocina ymp transaldolase B YP_001187425.1 2123286 R 399739 CDS YP_001187426.1 146306961 5110060 2124409..2124738 1 NC_009439.1 ferric uptake regulator family protein 2124738 5110060 Pmen_1932 Pseudomonas mendocina ymp ferric uptake regulator family protein YP_001187426.1 2124409 D 399739 CDS YP_001187427.1 146306962 5110061 complement(2124708..2125703) 1 NC_009439.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; tRNA-dihydrouridine synthase A 2125703 5110061 Pmen_1933 Pseudomonas mendocina ymp tRNA-dihydrouridine synthase A YP_001187427.1 2124708 R 399739 CDS YP_001187428.1 146306963 5110062 complement(2125809..2128889) 1 NC_009439.1 DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; error-prone DNA polymerase 2128889 dnaE2 5110062 dnaE2 Pseudomonas mendocina ymp error-prone DNA polymerase YP_001187428.1 2125809 R 399739 CDS YP_001187429.1 146306964 5110063 complement(2128886..2130307) 1 NC_009439.1 DNA repair nucleotidyltransferase/DNA polymerase-like protein 2130307 5110063 Pmen_1935 Pseudomonas mendocina ymp DNA repair nucleotidyltransferase/DNA polymerase-like protein YP_001187429.1 2128886 R 399739 CDS YP_001187430.1 146306965 5110064 complement(2130309..2130926) 1 NC_009439.1 hypothetical protein 2130926 5110064 Pmen_1936 Pseudomonas mendocina ymp hypothetical protein YP_001187430.1 2130309 R 399739 CDS YP_001187431.1 146306966 5110065 2131110..2133494 1 NC_009439.1 TIGRFAM: coenzyme PQQ biosynthesis protein PqqF; PFAM: peptidase M16 domain protein; coenzyme PQQ biosynthesis protein PqqF 2133494 5110065 Pmen_1937 Pseudomonas mendocina ymp coenzyme PQQ biosynthesis protein PqqF YP_001187431.1 2131110 D 399739 CDS YP_001187432.1 146306967 5110066 2133783..2134967 1 NC_009439.1 hypothetical protein 2134967 5110066 Pmen_1938 Pseudomonas mendocina ymp hypothetical protein YP_001187432.1 2133783 D 399739 CDS YP_001187433.1 146306968 5110067 2135309..2136463 1 NC_009439.1 PFAM: domain of unknown function DUF1745; hypothetical protein 2136463 5110067 Pmen_1939 Pseudomonas mendocina ymp hypothetical protein YP_001187433.1 2135309 D 399739 CDS YP_001187434.1 146306969 5106578 2138569..2139870 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2139870 5106578 Pmen_1941 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001187434.1 2138569 D 399739 CDS YP_001187435.1 146306970 5110069 complement(2140639..2141058) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2141058 5110069 Pmen_1942 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001187435.1 2140639 R 399739 CDS YP_001187436.1 146306971 5110070 complement(2141102..2141767) 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2141767 5110070 Pmen_1943 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001187436.1 2141102 R 399739 CDS YP_001187437.1 146306972 5110071 complement(2141791..2142366) 1 NC_009439.1 hypothetical protein 2142366 5110071 Pmen_1944 Pseudomonas mendocina ymp hypothetical protein YP_001187437.1 2141791 R 399739 CDS YP_001187438.1 146306973 5110072 complement(2142495..2143286) 1 NC_009439.1 PFAM: ABC-2 type transporter; ABC transporter 2143286 5110072 Pmen_1945 Pseudomonas mendocina ymp ABC transporter YP_001187438.1 2142495 R 399739 CDS YP_001187439.1 146306974 5110073 complement(2143283..2144101) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2144101 5110073 Pmen_1946 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187439.1 2143283 R 399739 CDS YP_001187440.1 146306975 5110074 complement(2144098..2145063) 1 NC_009439.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; hypothetical protein 2145063 5110074 Pmen_1947 Pseudomonas mendocina ymp hypothetical protein YP_001187440.1 2144098 R 399739 CDS YP_001187441.1 146306976 5110075 complement(2145145..2146320) 1 NC_009439.1 branched chain amino acid ABC transporter substrate-binding protein 2146320 5110075 Pmen_1948 Pseudomonas mendocina ymp branched chain amino acid ABC transporter substrate-binding protein YP_001187441.1 2145145 R 399739 CDS YP_001187442.1 146306977 5110076 2146479..2146916 1 NC_009439.1 hypothetical protein 2146916 5110076 Pmen_1949 Pseudomonas mendocina ymp hypothetical protein YP_001187442.1 2146479 D 399739 CDS YP_001187443.1 146306978 5110077 2146917..2148182 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 2148182 5110077 Pmen_1950 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001187443.1 2146917 D 399739 CDS YP_001187444.1 146306979 5110078 2148179..2148829 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2148829 5110078 Pmen_1951 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001187444.1 2148179 D 399739 CDS YP_001187445.1 146306980 5110079 2149004..2149543 1 NC_009439.1 PFAM: PEBP family protein; PBP family phospholipid-binding protein 2149543 5110079 Pmen_1952 Pseudomonas mendocina ymp PBP family phospholipid-binding protein YP_001187445.1 2149004 D 399739 CDS YP_001187446.1 146306981 5110080 2149686..2150492 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2150492 5110080 Pmen_1953 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187446.1 2149686 D 399739 CDS YP_001187447.1 146306982 5110081 complement(2150613..2151914) 1 NC_009439.1 glucose/sorbosone dehydrogenase-like protein 2151914 5110081 Pmen_1954 Pseudomonas mendocina ymp glucose/sorbosone dehydrogenase-like protein YP_001187447.1 2150613 R 399739 CDS YP_001187448.1 146306983 5109846 complement(2151911..2152339) 1 NC_009439.1 hypothetical protein 2152339 5109846 Pmen_1955 Pseudomonas mendocina ymp hypothetical protein YP_001187448.1 2151911 R 399739 CDS YP_001187449.1 146306984 5109847 complement(2152583..2153242) 1 NC_009439.1 PFAM: pentapeptide repeat protein; pentapeptide repeat-containing protein 2153242 5109847 Pmen_1956 Pseudomonas mendocina ymp pentapeptide repeat-containing protein YP_001187449.1 2152583 R 399739 CDS YP_001187450.1 146306985 5109848 complement(2153344..2155206) 1 NC_009439.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 2155206 5109848 Pmen_1957 Pseudomonas mendocina ymp Pyrrolo-quinoline quinone YP_001187450.1 2153344 R 399739 CDS YP_001187451.1 146306986 5109849 2155497..2155916 1 NC_009439.1 hypothetical protein 2155916 5109849 Pmen_1958 Pseudomonas mendocina ymp hypothetical protein YP_001187451.1 2155497 D 399739 CDS YP_001187452.1 146306987 5109850 2156065..2156937 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2156937 5109850 Pmen_1959 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001187452.1 2156065 D 399739 CDS YP_001187453.1 146306988 5109851 2156959..2157708 1 NC_009439.1 hypothetical protein 2157708 5109851 Pmen_1960 Pseudomonas mendocina ymp hypothetical protein YP_001187453.1 2156959 D 399739 CDS YP_001187454.1 146306989 5109852 2157765..2158694 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 2158694 5109852 Pmen_1961 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001187454.1 2157765 D 399739 CDS YP_001187455.1 146306990 5109853 complement(2159269..2159655) 1 NC_009439.1 hypothetical protein 2159655 5109853 Pmen_1962 Pseudomonas mendocina ymp hypothetical protein YP_001187455.1 2159269 R 399739 CDS YP_001187456.1 146306991 5109854 2159874..2161649 1 NC_009439.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 2161649 5109854 Pmen_1963 Pseudomonas mendocina ymp Pyrrolo-quinoline quinone YP_001187456.1 2159874 D 399739 CDS YP_001187457.1 146306992 5109855 2161982..2163502 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2163502 5109855 Pmen_1964 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001187457.1 2161982 D 399739 CDS YP_001187458.1 146306993 5109856 2163985..2164056 1 NC_009439.1 Required for coenzyme pyrroloquinoline quinone (PQQ) biosynthesis; probably provides the glutamate and tyrosine residues that are cross-linked and modified to form the coenzyme; coenzyme PQQ synthesis protein PqqA 2164056 pqqA 5109856 pqqA Pseudomonas mendocina ymp coenzyme PQQ synthesis protein PqqA YP_001187458.1 2163985 D 399739 CDS YP_001187459.1 146306994 5109857 2164104..2165018 1 NC_009439.1 possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 2165018 5109857 Pmen_1966 Pseudomonas mendocina ymp pyrroloquinoline quinone biosynthesis protein PqqB YP_001187459.1 2164104 D 399739 CDS YP_001187460.1 146306995 5109858 2165042..2165794 1 NC_009439.1 Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 2165794 5109858 Pmen_1967 Pseudomonas mendocina ymp pyrroloquinoline quinone biosynthesis protein PqqC YP_001187460.1 2165042 D 399739 CDS YP_001187461.1 146306996 5109859 2165791..2166096 1 NC_009439.1 with PqqC converts a biosynthetic intermediate to pyrroloquinoline quinone; pyrroloquinoline quinone biosynthesis protein PqqD 2166096 5109859 Pmen_1968 Pseudomonas mendocina ymp pyrroloquinoline quinone biosynthesis protein PqqD YP_001187461.1 2165791 D 399739 CDS YP_001187462.1 146306997 5109860 2166068..2167222 1 NC_009439.1 TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 2167222 5109860 Pmen_1969 Pseudomonas mendocina ymp pyrroloquinoline quinone biosynthesis protein PqqE YP_001187462.1 2166068 D 399739 CDS YP_001187463.1 146306998 5109861 2167210..2169168 1 NC_009439.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9 prolyl oligopeptidase 2169168 5109861 Pmen_1970 Pseudomonas mendocina ymp peptidase S9 prolyl oligopeptidase YP_001187463.1 2167210 D 399739 CDS YP_001187464.1 146306999 5109862 2169246..2170409 1 NC_009439.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2170409 5109862 Pmen_1971 Pseudomonas mendocina ymp iron-containing alcohol dehydrogenase YP_001187464.1 2169246 D 399739 CDS YP_001187465.1 146307000 5109863 2170393..2172117 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; PAS/PAC sensor hybrid histidine kinase 2172117 5109863 Pmen_1972 Pseudomonas mendocina ymp PAS/PAC sensor hybrid histidine kinase YP_001187465.1 2170393 D 399739 CDS YP_001187466.1 146307001 5109864 2172198..2172605 1 NC_009439.1 hypothetical protein 2172605 5109864 Pmen_1973 Pseudomonas mendocina ymp hypothetical protein YP_001187466.1 2172198 D 399739 CDS YP_001187467.1 146307002 5109865 2172590..2173543 1 NC_009439.1 hypothetical protein 2173543 5109865 Pmen_1974 Pseudomonas mendocina ymp hypothetical protein YP_001187467.1 2172590 D 399739 CDS YP_001187468.1 146307003 5109866 complement(2173597..2174880) 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2174880 5109866 Pmen_1975 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001187468.1 2173597 R 399739 CDS YP_001187469.1 146307004 5106579 2175406..2177328 1 NC_009439.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2177328 thrS 5106579 thrS Pseudomonas mendocina ymp threonyl-tRNA synthetase YP_001187469.1 2175406 D 399739 CDS YP_001187470.1 146307005 5109868 2177346..2177879 1 NC_009439.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 2177879 infC 5109868 infC Pseudomonas mendocina ymp translation initiation factor IF-3 YP_001187470.1 2177346 D 399739 CDS YP_001187471.1 146307006 5109869 2177940..2178134 1 NC_009439.1 PFAM: ribosomal protein L35; 50S ribosomal protein L35 2178134 rpmI 5109869 rpmI Pseudomonas mendocina ymp 50S ribosomal protein L35 YP_001187471.1 2177940 D 399739 CDS YP_001187472.1 146307007 5109870 2178164..2178520 1 NC_009439.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2178520 rplT 5109870 rplT Pseudomonas mendocina ymp 50S ribosomal protein L20 YP_001187472.1 2178164 D 399739 CDS YP_001187473.1 146307008 5109871 2178617..2179633 1 NC_009439.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2179633 pheS 5109871 pheS Pseudomonas mendocina ymp phenylalanyl-tRNA synthetase subunit alpha YP_001187473.1 2178617 D 399739 CDS YP_001187474.1 146307009 5109872 2179678..2182056 1 NC_009439.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2182056 pheT 5109872 pheT Pseudomonas mendocina ymp phenylalanyl-tRNA synthetase subunit beta YP_001187474.1 2179678 D 399739 CDS YP_001187475.1 146307010 5109873 2182060..2182362 1 NC_009439.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2182362 ihfA 5109873 ihfA Pseudomonas mendocina ymp integration host factor subunit alpha YP_001187475.1 2182060 D 399739 CDS YP_001187476.1 146307011 5109874 2182343..2182699 1 NC_009439.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 2182699 5109874 Pmen_1983 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001187476.1 2182343 D 399739 CDS YP_001187477.1 146307012 5106580 2183139..2183462 1 NC_009439.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; helix-hairpin-helix repeat-containing competence protein ComEA 2183462 5106580 Pmen_1984 Pseudomonas mendocina ymp helix-hairpin-helix repeat-containing competence protein ComEA YP_001187477.1 2183139 D 399739 CDS YP_001187478.1 146307013 5109876 2183561..2187037 1 NC_009439.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; DNA helicase/exodeoxyribonuclease V subunit gamma 2187037 5109876 Pmen_1985 Pseudomonas mendocina ymp DNA helicase/exodeoxyribonuclease V subunit gamma YP_001187478.1 2183561 D 399739 CDS YP_001187479.1 146307014 5109877 2187034..2190663 1 NC_009439.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; DNA helicase/exodeoxyribonuclease V subunit beta 2190663 5109877 Pmen_1986 Pseudomonas mendocina ymp DNA helicase/exodeoxyribonuclease V subunit beta YP_001187479.1 2187034 D 399739 CDS YP_001187480.1 146307015 5109878 2190660..2192690 1 NC_009439.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; SMART: AAA ATPase; DNA helicase/exodeoxyribonuclease V subunit alpha 2192690 5109878 Pmen_1987 Pseudomonas mendocina ymp DNA helicase/exodeoxyribonuclease V subunit alpha YP_001187480.1 2190660 D 399739 CDS YP_001187481.1 146307016 5106585 complement(2198715..2200277) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 2200277 5106585 Pmen_1988 Pseudomonas mendocina ymp transposase IS66 YP_001187481.1 2198715 R 399739 CDS YP_001187482.1 146307017 5109880 complement(2200297..2200656) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 2200656 5109880 Pmen_1989 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001187482.1 2200297 R 399739 CDS YP_001187483.1 146307018 5109881 complement(2200753..2201109) 1 NC_009439.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase 2201109 5109881 Pmen_1990 Pseudomonas mendocina ymp putative 6-pyruvoyl tetrahydropterin synthase YP_001187483.1 2200753 R 399739 CDS YP_001187484.1 146307019 5109882 complement(2201164..2202000) 1 NC_009439.1 hypothetical protein 2202000 5109882 Pmen_1991 Pseudomonas mendocina ymp hypothetical protein YP_001187484.1 2201164 R 399739 CDS YP_001187485.1 146307020 5109883 complement(2202051..2203130) 1 NC_009439.1 hypothetical protein 2203130 5109883 Pmen_1992 Pseudomonas mendocina ymp hypothetical protein YP_001187485.1 2202051 R 399739 CDS YP_001187486.1 146307021 5109884 2203279..2203587 1 NC_009439.1 PFAM: Propeptide, PepSY amd peptidase M4; peptidase 2203587 5109884 Pmen_1993 Pseudomonas mendocina ymp peptidase YP_001187486.1 2203279 D 399739 CDS YP_001187487.1 146307022 5109885 2203587..2203901 1 NC_009439.1 PFAM: Propeptide, PepSY amd peptidase M4; peptidase 2203901 5109885 Pmen_1994 Pseudomonas mendocina ymp peptidase YP_001187487.1 2203587 D 399739 CDS YP_001187488.1 146307023 5109886 2203901..2204569 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2204569 5109886 Pmen_1995 Pseudomonas mendocina ymp two component transcriptional regulator YP_001187488.1 2203901 D 399739 CDS YP_001187489.1 146307024 5109887 2204566..2205879 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2205879 5109887 Pmen_1996 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001187489.1 2204566 D 399739 CDS YP_001187490.1 146307025 5109888 complement(2205959..2206555) 1 NC_009439.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2206555 5109888 Pmen_1997 Pseudomonas mendocina ymp NADPH-dependent FMN reductase YP_001187490.1 2205959 R 399739 CDS YP_001187491.1 146307026 5109889 complement(2206701..2208845) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2208845 5109889 Pmen_1998 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187491.1 2206701 R 399739 CDS YP_001187492.1 146307027 5109890 2209048..2210367 1 NC_009439.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; Na+/H+ antiporter NhaC 2210367 5109890 Pmen_1999 Pseudomonas mendocina ymp Na+/H+ antiporter NhaC YP_001187492.1 2209048 D 399739 CDS YP_001187493.1 146307028 5109891 2210486..2212168 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 2212168 5109891 Pmen_2000 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187493.1 2210486 D 399739 CDS YP_001187494.1 146307029 5109892 complement(2212170..2213072) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2213072 5109892 Pmen_2001 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187494.1 2212170 R 399739 CDS YP_001187495.1 146307030 5109893 2213191..2213799 1 NC_009439.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 2213799 5109893 Pmen_2002 Pseudomonas mendocina ymp azoreductase YP_001187495.1 2213191 D 399739 CDS YP_001187496.1 146307031 5109894 complement(2213859..2215445) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2215445 5109894 Pmen_2003 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187496.1 2213859 R 399739 CDS YP_001187497.1 146307032 5109895 complement(2215954..2216355) 1 NC_009439.1 hypothetical protein 2216355 5109895 Pmen_2004 Pseudomonas mendocina ymp hypothetical protein YP_001187497.1 2215954 R 399739 CDS YP_001187498.1 146307033 5109896 complement(2216367..2217446) 1 NC_009439.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 2217446 5109896 Pmen_2005 Pseudomonas mendocina ymp NADH:flavin oxidoreductase YP_001187498.1 2216367 R 399739 CDS YP_001187499.1 146307034 5109897 2217571..2218443 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2218443 5109897 Pmen_2006 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187499.1 2217571 D 399739 CDS YP_001187500.1 146307035 5109898 complement(2218501..2219256) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2219256 5109898 Pmen_2007 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187500.1 2218501 R 399739 CDS YP_001187501.1 146307036 5109899 complement(2219256..2219924) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 2219924 5109899 Pmen_2008 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001187501.1 2219256 R 399739 CDS YP_001187502.1 146307037 5109900 complement(2219921..2220718) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; cystine transporter subunit 2220718 5109900 Pmen_2009 Pseudomonas mendocina ymp cystine transporter subunit YP_001187502.1 2219921 R 399739 CDS YP_001187503.1 146307038 5109901 complement(2220790..2221794) 1 NC_009439.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 2221794 5109901 Pmen_2010 Pseudomonas mendocina ymp D-cysteine desulfhydrase YP_001187503.1 2220790 R 399739 CDS YP_001187504.1 146307039 5109902 complement(2221916..2222620) 1 NC_009439.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 2222620 5109902 Pmen_2011 Pseudomonas mendocina ymp glutamine amidotransferase YP_001187504.1 2221916 R 399739 CDS YP_001187505.1 146307040 5109903 complement(2222617..2223645) 1 NC_009439.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding; homoserine dehydrogenase 2223645 5109903 Pmen_2012 Pseudomonas mendocina ymp homoserine dehydrogenase YP_001187505.1 2222617 R 399739 CDS YP_001187506.1 146307041 5109904 complement(2223665..2224087) 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2224087 5109904 Pmen_2013 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001187506.1 2223665 R 399739 CDS YP_001187507.1 146307042 5109905 2224193..2225062 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2225062 5109905 Pmen_2014 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187507.1 2224193 D 399739 CDS YP_001187508.1 146307043 5109906 2225193..2225843 1 NC_009439.1 catalyzes the reduction of nitroaromatic compounds such as nitrofurazone, quinones and the anti-tumor agent CB1954; NAD(P)H-dependent; oxygen insensitive; dihydropteridine reductase 2225843 5109906 Pmen_2015 Pseudomonas mendocina ymp dihydropteridine reductase YP_001187508.1 2225193 D 399739 CDS YP_001187509.1 146307044 5109907 complement(2225897..2226292) 1 NC_009439.1 PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2226292 5109907 Pmen_2016 Pseudomonas mendocina ymp endoribonuclease L-PSP YP_001187509.1 2225897 R 399739 CDS YP_001187510.1 146307045 5109908 2226433..2227359 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2227359 5109908 Pmen_2017 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187510.1 2226433 D 399739 CDS YP_001187511.1 146307046 5109909 complement(2227372..2228250) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2228250 5109909 Pmen_2018 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187511.1 2227372 R 399739 CDS YP_001187512.1 146307047 5109910 2228352..2229884 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2229884 5109910 Pmen_2019 Pseudomonas mendocina ymp NADH dehydrogenase subunit L YP_001187512.1 2228352 D 399739 CDS YP_001187513.1 146307048 5109911 2229881..2232328 1 NC_009439.1 hypothetical protein 2232328 5109911 Pmen_2020 Pseudomonas mendocina ymp hypothetical protein YP_001187513.1 2229881 D 399739 CDS YP_001187514.1 146307049 5109912 complement(2232375..2233226) 1 NC_009439.1 hypothetical protein 2233226 5109912 Pmen_2021 Pseudomonas mendocina ymp hypothetical protein YP_001187514.1 2232375 R 399739 CDS YP_001187515.1 146307050 5109913 2233323..2234252 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2234252 5109913 Pmen_2022 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187515.1 2233323 D 399739 CDS YP_001187516.1 146307051 5109914 complement(2234246..2235265) 1 NC_009439.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; translation factor SUA5 2235265 5109914 Pmen_2023 Pseudomonas mendocina ymp translation factor SUA5 YP_001187516.1 2234246 R 399739 CDS YP_001187517.1 146307052 5109915 complement(2235287..2237182) 1 NC_009439.1 PFAM: Patatin; patatin 2237182 5109915 Pmen_2024 Pseudomonas mendocina ymp patatin YP_001187517.1 2235287 R 399739 CDS YP_001187518.1 146307053 5109916 complement(2237262..2237540) 1 NC_009439.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2237540 5109916 Pmen_2025 Pseudomonas mendocina ymp PpiC-type peptidyl-prolyl cis-trans isomerase YP_001187518.1 2237262 R 399739 CDS YP_001187519.1 146307054 5109917 2237688..2238917 1 NC_009439.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 2238917 5109917 Pmen_2026 Pseudomonas mendocina ymp twitching motility protein YP_001187519.1 2237688 D 399739 CDS YP_001187520.1 146307055 5109918 complement(2238929..2239756) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 2239756 5109918 Pmen_2027 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001187520.1 2238929 R 399739 CDS YP_001187521.1 146307056 5109919 complement(2239749..2241704) 1 NC_009439.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 2241704 5109919 Pmen_2028 Pseudomonas mendocina ymp acetoacetyl-CoA synthetase YP_001187521.1 2239749 R 399739 CDS YP_001187522.1 146307057 5109920 complement(2241842..2242741) 1 NC_009439.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 2242741 5109920 Pmen_2029 Pseudomonas mendocina ymp hydroxymethylglutaryl-CoA lyase YP_001187522.1 2241842 R 399739 CDS YP_001187523.1 146307058 5109921 complement(2242923..2244857) 1 NC_009439.1 PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; 3-methylcrotonoyl-CoA carboxylase subunit alpha 2244857 5109921 Pmen_2030 Pseudomonas mendocina ymp 3-methylcrotonoyl-CoA carboxylase subunit alpha YP_001187523.1 2242923 R 399739 CDS YP_001187524.1 146307059 5109922 complement(2244854..2245654) 1 NC_009439.1 catalyzes the hydration of gamma-carboxygeranoyl-CoA to 3-hydroxy-gamma-carboxygeranoyl-CoA; gamma-carboxygeranoyl-CoA hydratase 2245654 5109922 Pmen_2031 Pseudomonas mendocina ymp gamma-carboxygeranoyl-CoA hydratase YP_001187524.1 2244854 R 399739 CDS YP_001187525.1 146307060 5109923 complement(2245730..2247337) 1 NC_009439.1 PFAM: carboxyl transferase; propionyl-CoA carboxylase 2247337 5109923 Pmen_2032 Pseudomonas mendocina ymp propionyl-CoA carboxylase YP_001187525.1 2245730 R 399739 CDS YP_001187526.1 146307061 5109767 complement(2247438..2248601) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; isovaleryl-CoA dehydrogenase 2248601 5109767 Pmen_2033 Pseudomonas mendocina ymp isovaleryl-CoA dehydrogenase YP_001187526.1 2247438 R 399739 CDS YP_001187527.1 146307062 5109768 complement(2248666..2249052) 1 NC_009439.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 2249052 5109768 Pmen_2034 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001187527.1 2248666 R 399739 CDS YP_001187528.1 146307063 5109769 2249134..2249901 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2249901 5109769 Pmen_2035 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187528.1 2249134 D 399739 CDS YP_001187529.1 146307064 5109770 2249992..2251179 1 NC_009439.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2251179 5109770 Pmen_2036 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001187529.1 2249992 D 399739 CDS YP_001187530.1 146307065 5109771 2251264..2252391 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2252391 5109771 Pmen_2037 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001187530.1 2251264 D 399739 CDS YP_001187531.1 146307066 5109772 complement(2252509..2253645) 1 NC_009439.1 PFAM: beta-lactamase; beta-lactamase 2253645 ampC 5109772 ampC Pseudomonas mendocina ymp beta-lactamase YP_001187531.1 2252509 R 399739 CDS YP_001187532.1 146307067 5109773 complement(2253658..2254095) 1 NC_009439.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2254095 5109773 Pmen_2039 Pseudomonas mendocina ymp AsnC family transcriptional regulator YP_001187532.1 2253658 R 399739 CDS YP_001187533.1 146307068 5109774 2254199..2255125 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2255125 5109774 Pmen_2040 Pseudomonas mendocina ymp hypothetical protein YP_001187533.1 2254199 D 399739 CDS YP_001187534.1 146307069 5109775 complement(2255115..2256950) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 2256950 5109775 Pmen_2041 Pseudomonas mendocina ymp Fis family GAF modulated sigma54 specific transcriptional regulator YP_001187534.1 2255115 R 399739 CDS YP_001187535.1 146307070 5109776 2257184..2258305 1 NC_009439.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 2258305 5109776 Pmen_2042 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187535.1 2257184 D 399739 CDS YP_001187536.1 146307071 5109777 2258305..2259402 1 NC_009439.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 2259402 5109777 Pmen_2043 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187536.1 2258305 D 399739 CDS YP_001187537.1 146307072 5109778 2259399..2260262 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2260262 5109778 Pmen_2044 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001187537.1 2259399 D 399739 CDS YP_001187538.1 146307073 5109779 2260271..2261071 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2261071 5109779 Pmen_2045 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001187538.1 2260271 D 399739 CDS YP_001187539.1 146307074 5109780 2261084..2261356 1 NC_009439.1 hypothetical protein 2261356 5109780 Pmen_2046 Pseudomonas mendocina ymp hypothetical protein YP_001187539.1 2261084 D 399739 CDS YP_001187540.1 146307075 5109781 2261408..2263150 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2263150 5109781 Pmen_2047 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001187540.1 2261408 D 399739 CDS YP_001187541.1 146307076 5109782 complement(2263211..2264065) 1 NC_009439.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2264065 5109782 Pmen_2048 Pseudomonas mendocina ymp bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001187541.1 2263211 R 399739 CDS YP_001187542.1 146307077 5106588 2264792..2266102 1 NC_009439.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2266102 tig 5106588 tig Pseudomonas mendocina ymp trigger factor YP_001187542.1 2264792 D 399739 CDS YP_001187543.1 146307078 5109784 2266197..2266838 1 NC_009439.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2266838 clpP 5109784 clpP Pseudomonas mendocina ymp ATP-dependent Clp protease proteolytic subunit YP_001187543.1 2266197 D 399739 CDS YP_001187544.1 146307079 5109785 2266946..2268226 1 NC_009439.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2268226 clpX 5109785 clpX Pseudomonas mendocina ymp ATP-dependent protease ATP-binding subunit ClpX YP_001187544.1 2266946 D 399739 CDS YP_001187545.1 146307080 5109786 2268376..2270772 1 NC_009439.1 TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2270772 5109786 Pmen_2052 Pseudomonas mendocina ymp ATP-dependent protease La YP_001187545.1 2268376 D 399739 CDS YP_001187546.1 146307081 5109787 2270908..2271180 1 NC_009439.1 PFAM: histone family protein DNA-binding protein; nucleoid protein HU subunit beta 2271180 5109787 Pmen_2053 Pseudomonas mendocina ymp nucleoid protein HU subunit beta YP_001187546.1 2270908 D 399739 CDS YP_001187547.1 146307082 5109788 2271376..2273223 1 NC_009439.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 2273223 5109788 Pmen_2054 Pseudomonas mendocina ymp PpiC-type peptidyl-prolyl cis-trans isomerase YP_001187547.1 2271376 D 399739 CDS YP_001187548.1 146307083 5109789 complement(2273278..2274825) 1 NC_009439.1 PFAM: phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 2274825 5109789 Pmen_2055 Pseudomonas mendocina ymp phospholipase D/transphosphatidylase YP_001187548.1 2273278 R 399739 CDS YP_001187549.1 146307084 5109790 complement(2275044..2275838) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; enoyl-(acyl carrier protein) reductase 2275838 5109790 Pmen_2056 Pseudomonas mendocina ymp enoyl-(acyl carrier protein) reductase YP_001187549.1 2275044 R 399739 CDS YP_001187550.1 146307085 5109791 complement(2275867..2277480) 1 NC_009439.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; ABC transporter-like protein 2277480 5109791 Pmen_2057 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187550.1 2275867 R 399739 CDS YP_001187551.1 146307086 5109792 complement(2277482..2278501) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2278501 5109792 Pmen_2058 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001187551.1 2277482 R 399739 CDS YP_001187552.1 146307087 5109793 complement(2278504..2279577) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2279577 5109793 Pmen_2059 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001187552.1 2278504 R 399739 CDS YP_001187553.1 146307088 5109794 complement(2279579..2281426) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 2281426 5109794 Pmen_2060 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001187553.1 2279579 R 399739 CDS YP_001187554.1 146307089 5109795 complement(2281423..2283273) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 2283273 5109795 Pmen_2061 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001187554.1 2281423 R 399739 CDS YP_001187555.1 146307090 5109796 2283400..2284842 1 NC_009439.1 PFAM: GAF domain protein; HDOD; putative signal transduction protein 2284842 5109796 Pmen_2062 Pseudomonas mendocina ymp putative signal transduction protein YP_001187555.1 2283400 D 399739 CDS YP_001187556.1 146307091 5109797 complement(2284843..2286339) 1 NC_009439.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; lytic transglycosylase 2286339 5109797 Pmen_2063 Pseudomonas mendocina ymp lytic transglycosylase YP_001187556.1 2284843 R 399739 CDS YP_001187557.1 146307092 5109798 complement(2286590..2287363) 1 NC_009439.1 PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 2287363 5109798 Pmen_2064 Pseudomonas mendocina ymp hydroxyacylglutathione hydrolase YP_001187557.1 2286590 R 399739 CDS YP_001187558.1 146307093 5109799 2287436..2288194 1 NC_009439.1 hypothetical protein 2288194 5109799 Pmen_2065 Pseudomonas mendocina ymp hypothetical protein YP_001187558.1 2287436 D 399739 CDS YP_001187559.1 146307094 5109800 2288235..2288687 1 NC_009439.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 2288687 rnhA 5109800 rnhA Pseudomonas mendocina ymp ribonuclease H YP_001187559.1 2288235 D 399739 CDS YP_001187560.1 146307095 5109801 2288761..2289519 1 NC_009439.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 2289519 5109801 Pmen_2067 Pseudomonas mendocina ymp DNA polymerase III subunit epsilon YP_001187560.1 2288761 D 399739 CDS YP_001187561.1 146307096 5109802 2289642..2291885 1 NC_009439.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; lysine decarboxylase 2291885 5109802 Pmen_2068 Pseudomonas mendocina ymp lysine decarboxylase YP_001187561.1 2289642 D 399739 CDS YP_001187562.1 146307097 5109803 2292088..2292900 1 NC_009439.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2292900 5109803 Pmen_2069 Pseudomonas mendocina ymp enoyl-CoA hydratase YP_001187562.1 2292088 D 399739 CDS YP_001187563.1 146307098 5109804 2292947..2294626 1 NC_009439.1 hypothetical protein 2294626 5109804 Pmen_2070 Pseudomonas mendocina ymp hypothetical protein YP_001187563.1 2292947 D 399739 CDS YP_001187564.1 146307099 5109805 2294626..2295447 1 NC_009439.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase 2295447 nudC 5109805 nudC Pseudomonas mendocina ymp NADH pyrophosphatase YP_001187564.1 2294626 D 399739 CDS YP_001187565.1 146307100 5109806 complement(2295495..2296340) 1 NC_009439.1 PFAM: protein of unknown function DUF81; hypothetical protein 2296340 5109806 Pmen_2072 Pseudomonas mendocina ymp hypothetical protein YP_001187565.1 2295495 R 399739 CDS YP_001187566.1 146307101 5109807 2296376..2297023 1 NC_009439.1 hypothetical protein 2297023 5109807 Pmen_2073 Pseudomonas mendocina ymp hypothetical protein YP_001187566.1 2296376 D 399739 CDS YP_001187567.1 146307102 5109808 complement(2297259..2298026) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 2298026 5109808 Pmen_2074 Pseudomonas mendocina ymp short chain dehydrogenase YP_001187567.1 2297259 R 399739 CDS YP_001187568.1 146307103 5109809 complement(2298043..2299110) 1 NC_009439.1 PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 2299110 5109809 Pmen_2075 Pseudomonas mendocina ymp aminoglycoside phosphotransferase YP_001187568.1 2298043 R 399739 CDS YP_001187569.1 146307104 5109810 complement(2299378..2300367) 1 NC_009439.1 TIGRFAM: alpha-L-glutamate ligase-like protein; PFAM: RimK domain protein ATP-grasp; alpha-L-glutamate ligase-like protein 2300367 5109810 Pmen_2076 Pseudomonas mendocina ymp alpha-L-glutamate ligase-like protein YP_001187569.1 2299378 R 399739 CDS YP_001187570.1 146307105 5109811 complement(2300372..2301898) 1 NC_009439.1 hypothetical protein 2301898 5109811 Pmen_2077 Pseudomonas mendocina ymp hypothetical protein YP_001187570.1 2300372 R 399739 CDS YP_001187571.1 146307106 5109812 complement(2301904..2302440) 1 NC_009439.1 PFAM: protein of unknown function DUF785; hypothetical protein 2302440 5109812 Pmen_2078 Pseudomonas mendocina ymp hypothetical protein YP_001187571.1 2301904 R 399739 CDS YP_001187572.1 146307107 5109813 2302744..2303466 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2303466 5109813 Pmen_2079 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001187572.1 2302744 D 399739 CDS YP_001187573.1 146307108 5109814 2303463..2304350 1 NC_009439.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 2304350 prpB 5109814 prpB Pseudomonas mendocina ymp 2-methylisocitrate lyase YP_001187573.1 2303463 D 399739 CDS YP_001187574.1 146307109 5109815 2304387..2305601 1 NC_009439.1 catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 2305601 5109815 Pmen_2081 Pseudomonas mendocina ymp methylcitrate synthase YP_001187574.1 2304387 D 399739 CDS YP_001187575.1 146307110 5109816 2305603..2308224 1 NC_009439.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 2308224 5109816 Pmen_2082 Pseudomonas mendocina ymp aconitate hydratase YP_001187575.1 2305603 D 399739 CDS YP_001187576.1 146307111 5109817 2308401..2309633 1 NC_009439.1 TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; methylitaconate delta2-delta3-isomerase 2309633 5109817 Pmen_2083 Pseudomonas mendocina ymp methylitaconate delta2-delta3-isomerase YP_001187576.1 2308401 D 399739 CDS YP_001187577.1 146307112 5109818 complement(2309699..2310517) 1 NC_009439.1 PFAM: protein of unknown function DUF299; hypothetical protein 2310517 5109818 Pmen_2084 Pseudomonas mendocina ymp hypothetical protein YP_001187577.1 2309699 R 399739 CDS YP_001187578.1 146307113 5109819 2310698..2313070 1 NC_009439.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2313070 5109819 Pmen_2085 Pseudomonas mendocina ymp phosphoenolpyruvate synthase YP_001187578.1 2310698 D 399739 CDS YP_001187579.1 146307114 5109820 2313258..2314247 1 NC_009439.1 hypothetical protein 2314247 5109820 Pmen_2086 Pseudomonas mendocina ymp hypothetical protein YP_001187579.1 2313258 D 399739 CDS YP_001187580.1 146307115 5109821 2314499..2314987 1 NC_009439.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 2314987 5109821 Pmen_2087 Pseudomonas mendocina ymp ribonuclease activity regulator protein RraA YP_001187580.1 2314499 D 399739 CDS YP_001187581.1 146307116 5109822 2314993..2315979 1 NC_009439.1 PFAM: Mg2+ transporter protein, CorA family protein; Mg2+ transporter protein, CorA family protein 2315979 5109822 Pmen_2088 Pseudomonas mendocina ymp Mg2+ transporter protein, CorA family protein YP_001187581.1 2314993 D 399739 CDS YP_001187582.1 146307117 5109823 2316035..2316280 1 NC_009439.1 hypothetical protein 2316280 5109823 Pmen_2089 Pseudomonas mendocina ymp hypothetical protein YP_001187582.1 2316035 D 399739 CDS YP_001187583.1 146307118 5109824 2316282..2317106 1 NC_009439.1 PFAM: Conserved TM helix repeat-containing protein; TM helix repeat-containing protein 2317106 5109824 Pmen_2090 Pseudomonas mendocina ymp TM helix repeat-containing protein YP_001187583.1 2316282 D 399739 CDS YP_001187584.1 146307119 5109825 2317189..2317779 1 NC_009439.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in Pseudomonas fluorescens and P. aeruginosa regulates outer membrane protein OprF expression; RNA polymerase sigma factor SigX 2317779 5109825 Pmen_2091 Pseudomonas mendocina ymp RNA polymerase sigma factor SigX YP_001187584.1 2317189 D 399739 CDS YP_001187585.1 146307120 5109826 2317888..2318871 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpF family protein; OmpF family protein 2318871 5109826 Pmen_2092 Pseudomonas mendocina ymp OmpF family protein YP_001187585.1 2317888 D 399739 CDS YP_001187586.1 146307121 5109827 complement(2318986..2319729) 1 NC_009439.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1; uroporphyrin-III C-methyltransferase 2319729 5109827 Pmen_2093 Pseudomonas mendocina ymp uroporphyrin-III C-methyltransferase YP_001187586.1 2318986 R 399739 CDS YP_001187587.1 146307122 5109828 complement(2319795..2322512) 1 NC_009439.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; assimilatory nitrate reductase (NADH) subunit alpha 2322512 5109828 Pmen_2094 Pseudomonas mendocina ymp assimilatory nitrate reductase (NADH) subunit alpha YP_001187587.1 2319795 R 399739 CDS YP_001187588.1 146307123 5109829 complement(2322622..2322948) 1 NC_009439.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; assimilatory nitrite reductase (NAD(P)H) small subunit 2322948 5109829 Pmen_2095 Pseudomonas mendocina ymp assimilatory nitrite reductase (NAD(P)H) small subunit YP_001187588.1 2322622 R 399739 CDS YP_001187589.1 146307124 5109830 complement(2322945..2325401) 1 NC_009439.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; assimilatory nitrite reductase (NAD(P)H) large subunit 2325401 5109830 Pmen_2096 Pseudomonas mendocina ymp assimilatory nitrite reductase (NAD(P)H) large subunit YP_001187589.1 2322945 R 399739 CDS YP_001187590.1 146307125 5109831 complement(2325681..2327345) 1 NC_009439.1 PFAM: protein kinase; protein phosphatase 2C domain protein; SMART: serine/threonine protein kinase; protein kinase 2327345 5109831 Pmen_2097 Pseudomonas mendocina ymp protein kinase YP_001187590.1 2325681 R 399739 CDS YP_001187591.1 146307126 5109832 complement(2327456..2328667) 1 NC_009439.1 TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 2328667 5109832 Pmen_2098 Pseudomonas mendocina ymp nitrite transporter YP_001187591.1 2327456 R 399739 CDS YP_001187592.1 146307127 5109833 complement(2329090..2329245) 1 NC_009439.1 hypothetical protein 2329245 5109833 Pmen_2099 Pseudomonas mendocina ymp hypothetical protein YP_001187592.1 2329090 R 399739 CDS YP_001187593.1 146307128 5109834 complement(2329386..2329829) 1 NC_009439.1 thioesterase-like protein 2329829 5109834 Pmen_2100 Pseudomonas mendocina ymp thioesterase-like protein YP_001187593.1 2329386 R 399739 CDS YP_001187594.1 146307129 5109835 complement(2329908..2331752) 1 NC_009439.1 PFAM: sulfatase; sulfatase 2331752 5109835 Pmen_2101 Pseudomonas mendocina ymp sulfatase YP_001187594.1 2329908 R 399739 CDS YP_001187595.1 146307130 5109836 complement(2331826..2332515) 1 NC_009439.1 hypothetical protein 2332515 5109836 Pmen_2102 Pseudomonas mendocina ymp hypothetical protein YP_001187595.1 2331826 R 399739 CDS YP_001187596.1 146307131 5109837 complement(2332626..2333417) 1 NC_009439.1 TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D 2333417 5109837 Pmen_2103 Pseudomonas mendocina ymp nitrate ABC transporter ATPases C and D YP_001187596.1 2332626 R 399739 CDS YP_001187597.1 146307132 5109838 complement(2333535..2334386) 1 NC_009439.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; nitrate ABC transporter inner membrane subunit 2334386 5109838 Pmen_2104 Pseudomonas mendocina ymp nitrate ABC transporter inner membrane subunit YP_001187597.1 2333535 R 399739 CDS YP_001187598.1 146307133 5109839 complement(2334399..2335682) 1 NC_009439.1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 2335682 5109839 Pmen_2105 Pseudomonas mendocina ymp nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_001187598.1 2334399 R 399739 CDS YP_001187599.1 146307134 5109840 complement(2336070..2336384) 1 NC_009439.1 hypothetical protein 2336384 5109840 Pmen_2106 Pseudomonas mendocina ymp hypothetical protein YP_001187599.1 2336070 R 399739 CDS YP_001187600.1 146307135 5109841 2336532..2336924 1 NC_009439.1 hypothetical protein 2336924 5109841 Pmen_2107 Pseudomonas mendocina ymp hypothetical protein YP_001187600.1 2336532 D 399739 CDS YP_001187601.1 146307136 5109842 complement(2337024..2337713) 1 NC_009439.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2337713 5109842 Pmen_2108 Pseudomonas mendocina ymp enoyl-CoA hydratase YP_001187601.1 2337024 R 399739 CDS YP_001187602.1 146307137 5109843 2337900..2338118 1 NC_009439.1 hypothetical protein 2338118 5109843 Pmen_2109 Pseudomonas mendocina ymp hypothetical protein YP_001187602.1 2337900 D 399739 CDS YP_001187603.1 146307138 5106589 complement(2338357..2339364) 1 NC_009439.1 PFAM: phage integrase family protein; phage integrase family protein 2339364 5106589 Pmen_2110 Pseudomonas mendocina ymp phage integrase family protein YP_001187603.1 2338357 R 399739 CDS YP_001187604.1 146307139 5109845 complement(2339364..2340641) 1 NC_009439.1 hypothetical protein 2340641 5109845 Pmen_2111 Pseudomonas mendocina ymp hypothetical protein YP_001187604.1 2339364 R 399739 CDS YP_001187605.1 146307140 5109453 complement(2340795..2341985) 1 NC_009439.1 PFAM: Zonular occludens toxin; zonular occludens toxin 2341985 5109453 Pmen_2112 Pseudomonas mendocina ymp zonular occludens toxin YP_001187605.1 2340795 R 399739 CDS YP_001187606.1 146307141 5109454 complement(2341985..2342302) 1 NC_009439.1 hypothetical protein 2342302 5109454 Pmen_2113 Pseudomonas mendocina ymp hypothetical protein YP_001187606.1 2341985 R 399739 CDS YP_001187607.1 146307142 5109455 complement(2342304..2343620) 1 NC_009439.1 hypothetical protein 2343620 5109455 Pmen_2114 Pseudomonas mendocina ymp hypothetical protein YP_001187607.1 2342304 R 399739 CDS YP_001187608.1 146307143 5109456 complement(2343974..2344177) 1 NC_009439.1 hypothetical protein 2344177 5109456 Pmen_2115 Pseudomonas mendocina ymp hypothetical protein YP_001187608.1 2343974 R 399739 CDS YP_001187609.1 146307144 5109457 complement(2344187..2344366) 1 NC_009439.1 hypothetical protein 2344366 5109457 Pmen_2116 Pseudomonas mendocina ymp hypothetical protein YP_001187609.1 2344187 R 399739 CDS YP_001187610.1 146307145 5109458 complement(2344382..2344750) 1 NC_009439.1 hypothetical protein 2344750 5109458 Pmen_2117 Pseudomonas mendocina ymp hypothetical protein YP_001187610.1 2344382 R 399739 CDS YP_001187611.1 146307146 5106590 complement(2344999..2345286) 1 NC_009439.1 hypothetical protein 2345286 5106590 Pmen_2119 Pseudomonas mendocina ymp hypothetical protein YP_001187611.1 2344999 R 399739 CDS YP_001187612.1 146307147 5109460 complement(2345291..2345581) 1 NC_009439.1 hypothetical protein 2345581 5109460 Pmen_2120 Pseudomonas mendocina ymp hypothetical protein YP_001187612.1 2345291 R 399739 CDS YP_001187613.1 146307148 5109461 complement(2345621..2345836) 1 NC_009439.1 hypothetical protein 2345836 5109461 Pmen_2121 Pseudomonas mendocina ymp hypothetical protein YP_001187613.1 2345621 R 399739 CDS YP_001187614.1 146307149 5109462 2345967..2346236 1 NC_009439.1 hypothetical protein 2346236 5109462 Pmen_2122 Pseudomonas mendocina ymp hypothetical protein YP_001187614.1 2345967 D 399739 CDS YP_001187615.1 146307150 5109463 2346304..2347131 1 NC_009439.1 hypothetical protein 2347131 5109463 Pmen_2123 Pseudomonas mendocina ymp hypothetical protein YP_001187615.1 2346304 D 399739 CDS YP_001187616.1 146307151 5109464 2347179..2347838 1 NC_009439.1 hypothetical protein 2347838 5109464 Pmen_2124 Pseudomonas mendocina ymp hypothetical protein YP_001187616.1 2347179 D 399739 CDS YP_001187617.1 146307152 5109465 2347893..2348642 1 NC_009439.1 hypothetical protein 2348642 5109465 Pmen_2125 Pseudomonas mendocina ymp hypothetical protein YP_001187617.1 2347893 D 399739 CDS YP_001187618.1 146307153 5109466 complement(2349802..2350131) 1 NC_009439.1 PFAM: plasmid stabilization system; plasmid stabilization system protein 2350131 5109466 Pmen_2126 Pseudomonas mendocina ymp plasmid stabilization system protein YP_001187618.1 2349802 R 399739 CDS YP_001187619.1 146307154 5109467 complement(2350128..2350364) 1 NC_009439.1 TIGRFAM: putative addiction module antidote protein, CC2985 family; CopG/Arc/MetJ family transcriptional regulator 2350364 5109467 Pmen_2127 Pseudomonas mendocina ymp CopG/Arc/MetJ family transcriptional regulator YP_001187619.1 2350128 R 399739 CDS YP_001187620.1 146307155 5109468 2350810..2351016 1 NC_009439.1 hypothetical protein 2351016 5109468 Pmen_2128 Pseudomonas mendocina ymp hypothetical protein YP_001187620.1 2350810 D 399739 CDS YP_001187621.1 146307156 5109469 2351124..2352266 1 NC_009439.1 hypothetical protein 2352266 5109469 Pmen_2129 Pseudomonas mendocina ymp hypothetical protein YP_001187621.1 2351124 D 399739 CDS YP_001187622.1 146307157 5109470 2352301..2352873 1 NC_009439.1 PFAM: Elongation factor P/YeiP protein; Elongation factor, KOW domain protein; translation initiation factor 5A (eIF-5A) 2352873 5109470 Pmen_2130 Pseudomonas mendocina ymp translation initiation factor 5A (eIF-5A) YP_001187622.1 2352301 D 399739 CDS YP_001187623.1 146307158 5109471 complement(2352962..2353957) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2353957 5109471 Pmen_2131 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187623.1 2352962 R 399739 CDS YP_001187624.1 146307159 5109472 2354026..2354790 1 NC_009439.1 PFAM: protein of unknown function DUF81; hypothetical protein 2354790 5109472 Pmen_2132 Pseudomonas mendocina ymp hypothetical protein YP_001187624.1 2354026 D 399739 CDS YP_001187625.1 146307160 5109473 complement(2354785..2355639) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2355639 5109473 Pmen_2133 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187625.1 2354785 R 399739 CDS YP_001187626.1 146307161 5109474 2355737..2355961 1 NC_009439.1 PFAM: protein of unknown function DUF1127; hypothetical protein 2355961 5109474 Pmen_2134 Pseudomonas mendocina ymp hypothetical protein YP_001187626.1 2355737 D 399739 CDS YP_001187627.1 146307162 5109475 2355985..2356929 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2356929 5109475 Pmen_2135 Pseudomonas mendocina ymp hypothetical protein YP_001187627.1 2355985 D 399739 CDS YP_001187628.1 146307163 5109476 2356929..2357402 1 NC_009439.1 hypothetical protein 2357402 5109476 Pmen_2136 Pseudomonas mendocina ymp hypothetical protein YP_001187628.1 2356929 D 399739 CDS YP_001187629.1 146307164 5109477 2357417..2358610 1 NC_009439.1 PFAM: protein of unknown function DUF1006; hypothetical protein 2358610 5109477 Pmen_2137 Pseudomonas mendocina ymp hypothetical protein YP_001187629.1 2357417 D 399739 CDS YP_001187630.1 146307165 5109478 complement(2358607..2358996) 1 NC_009439.1 PFAM: protein of unknown function DUF1311; hypothetical protein 2358996 5109478 Pmen_2138 Pseudomonas mendocina ymp hypothetical protein YP_001187630.1 2358607 R 399739 CDS YP_001187631.1 146307166 5109479 complement(2359041..2359796) 1 NC_009439.1 PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 2359796 5109479 Pmen_2139 Pseudomonas mendocina ymp peptidase M48, Ste24p YP_001187631.1 2359041 R 399739 CDS YP_001187632.1 146307167 5109480 complement(2359957..2361342) 1 NC_009439.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase 2361342 5109480 Pmen_2140 Pseudomonas mendocina ymp 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase YP_001187632.1 2359957 R 399739 CDS YP_001187633.1 146307168 5109481 complement(2361422..2362354) 1 NC_009439.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 2362354 5109481 Pmen_2141 Pseudomonas mendocina ymp bile acid:sodium symporter YP_001187633.1 2361422 R 399739 CDS YP_001187634.1 146307169 5109482 complement(2362357..2363685) 1 NC_009439.1 PFAM: flavin-containing monooxygenase FMO; flavin-containing monooxygenase 2363685 5109482 Pmen_2142 Pseudomonas mendocina ymp flavin-containing monooxygenase YP_001187634.1 2362357 R 399739 CDS YP_001187635.1 146307170 5109483 2363823..2364602 1 NC_009439.1 spermidine synthase-like protein 2364602 5109483 Pmen_2143 Pseudomonas mendocina ymp spermidine synthase-like protein YP_001187635.1 2363823 D 399739 CDS YP_001187636.1 146307171 5109484 2364939..2366621 1 NC_009439.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 2366621 5109484 Pmen_2144 Pseudomonas mendocina ymp DEAD/DEAH box helicase YP_001187636.1 2364939 D 399739 CDS YP_001187637.1 146307172 5109485 complement(2366708..2367109) 1 NC_009439.1 hypothetical protein 2367109 5109485 Pmen_2145 Pseudomonas mendocina ymp hypothetical protein YP_001187637.1 2366708 R 399739 CDS YP_001187638.1 146307173 5109486 complement(2367249..2367746) 1 NC_009439.1 PFAM: uncharacterised conserved protein UCP030820; hypothetical protein 2367746 5109486 Pmen_2146 Pseudomonas mendocina ymp hypothetical protein YP_001187638.1 2367249 R 399739 CDS YP_001187639.1 146307174 5109487 complement(2367730..2369388) 1 NC_009439.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase 2369388 5109487 Pmen_2147 Pseudomonas mendocina ymp sulfite reductase YP_001187639.1 2367730 R 399739 CDS YP_001187640.1 146307175 5109488 2369581..2369736 1 NC_009439.1 hypothetical protein 2369736 5109488 Pmen_2148 Pseudomonas mendocina ymp hypothetical protein YP_001187640.1 2369581 D 399739 CDS YP_001187641.1 146307176 5109489 2369792..2370892 1 NC_009439.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2370892 5109489 Pmen_2149 Pseudomonas mendocina ymp periplasmic binding protein/LacI transcriptional regulator YP_001187641.1 2369792 D 399739 CDS YP_001187642.1 146307177 5109490 complement(2370893..2371120) 1 NC_009439.1 hypothetical protein 2371120 5109490 Pmen_2150 Pseudomonas mendocina ymp hypothetical protein YP_001187642.1 2370893 R 399739 CDS YP_001187643.1 146307178 5109491 2371275..2374493 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 2374493 5109491 Pmen_2151 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001187643.1 2371275 D 399739 CDS YP_001187644.1 146307179 5109492 2374539..2375366 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2375366 5109492 Pmen_2152 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187644.1 2374539 D 399739 CDS YP_001187645.1 146307180 5109493 2375389..2376816 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2376816 5109493 Pmen_2153 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001187645.1 2375389 D 399739 CDS YP_001187646.1 146307181 5109494 complement(2376854..2378737) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2378737 5109494 Pmen_2154 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187646.1 2376854 R 399739 CDS YP_001187647.1 146307182 5109495 complement(2378876..2379916) 1 NC_009439.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2379916 5109495 Pmen_2155 Pseudomonas mendocina ymp ribosomal RNA large subunit methyltransferase N YP_001187647.1 2378876 R 399739 CDS YP_001187648.1 146307183 5109496 complement(2379932..2380957) 1 NC_009439.1 hypothetical protein 2380957 5109496 Pmen_2156 Pseudomonas mendocina ymp hypothetical protein YP_001187648.1 2379932 R 399739 CDS YP_001187649.1 146307184 5109497 2381096..2381389 1 NC_009439.1 hypothetical protein 2381389 5109497 Pmen_2157 Pseudomonas mendocina ymp hypothetical protein YP_001187649.1 2381096 D 399739 CDS YP_001187650.1 146307185 5109498 complement(2381640..2381972) 1 NC_009439.1 osmotically-inducible lipoprotein E; activator of ntr-like gene protein; DNA-binding transcriptional activator OsmE 2381972 5109498 Pmen_2158 Pseudomonas mendocina ymp DNA-binding transcriptional activator OsmE YP_001187650.1 2381640 R 399739 CDS YP_001187651.1 146307186 5109499 complement(2382098..2385808) 1 NC_009439.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2385808 metH 5109499 metH Pseudomonas mendocina ymp B12-dependent methionine synthase YP_001187651.1 2382098 R 399739 CDS YP_001187652.1 146307187 5109500 2385961..2388237 1 NC_009439.1 PFAM: fatty acid cistrans isomerase; fatty acid cistrans isomerase 2388237 5109500 Pmen_2160 Pseudomonas mendocina ymp fatty acid cistrans isomerase YP_001187652.1 2385961 D 399739 CDS YP_001187653.1 146307188 5109501 2388353..2388937 1 NC_009439.1 PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; HesB/YadR/YfhF-family protein 2388937 5109501 Pmen_2161 Pseudomonas mendocina ymp HesB/YadR/YfhF-family protein YP_001187653.1 2388353 D 399739 CDS YP_001187654.1 146307189 5109502 complement(2388992..2389501) 1 NC_009439.1 PFAM: HPP family protein+B94; HPP family protein 2389501 5109502 Pmen_2162 Pseudomonas mendocina ymp HPP family protein YP_001187654.1 2388992 R 399739 CDS YP_001187655.1 146307190 5109503 complement(2389495..2389731) 1 NC_009439.1 PFAM: protein of unknown function DUF1272; hypothetical protein 2389731 5109503 Pmen_2163 Pseudomonas mendocina ymp hypothetical protein YP_001187655.1 2389495 R 399739 CDS YP_001187656.1 146307191 5109504 complement(2389724..2390746) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; transcriptional regulator 2390746 5109504 Pmen_2164 Pseudomonas mendocina ymp transcriptional regulator YP_001187656.1 2389724 R 399739 CDS YP_001187657.1 146307192 5109505 complement(2390864..2391133) 1 NC_009439.1 hypothetical protein 2391133 5109505 Pmen_2165 Pseudomonas mendocina ymp hypothetical protein YP_001187657.1 2390864 R 399739 CDS YP_001187658.1 146307193 5109506 complement(2391315..2392520) 1 NC_009439.1 hypothetical protein 2392520 5109506 Pmen_2166 Pseudomonas mendocina ymp hypothetical protein YP_001187658.1 2391315 R 399739 CDS YP_001187659.1 146307194 5109507 complement(2392556..2394430) 1 NC_009439.1 hypothetical protein 2394430 5109507 Pmen_2167 Pseudomonas mendocina ymp hypothetical protein YP_001187659.1 2392556 R 399739 CDS YP_001187660.1 146307195 5109508 complement(2394454..2395755) 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2395755 5109508 Pmen_2168 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001187660.1 2394454 R 399739 CDS YP_001187661.1 146307196 5109509 2396085..2397320 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; sigma-54 dependent trancsriptional regulator 2397320 5109509 Pmen_2169 Pseudomonas mendocina ymp sigma-54 dependent trancsriptional regulator YP_001187661.1 2396085 D 399739 CDS YP_001187662.1 146307197 5109510 2397391..2397858 1 NC_009439.1 hypothetical protein 2397858 5109510 Pmen_2170 Pseudomonas mendocina ymp hypothetical protein YP_001187662.1 2397391 D 399739 CDS YP_001187663.1 146307198 5109511 complement(2397826..2398377) 1 NC_009439.1 NAD metabolism ATPase/kinase-like protein 2398377 5109511 Pmen_2171 Pseudomonas mendocina ymp NAD metabolism ATPase/kinase-like protein YP_001187663.1 2397826 R 399739 CDS YP_001187664.1 146307199 5109512 complement(2398374..2398943) 1 NC_009439.1 TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; nicotinamide mononucleotide transporter PnuC 2398943 5109512 Pmen_2172 Pseudomonas mendocina ymp nicotinamide mononucleotide transporter PnuC YP_001187664.1 2398374 R 399739 CDS YP_001187665.1 146307200 5109513 complement(2398993..2399607) 1 NC_009439.1 hypothetical protein 2399607 5109513 Pmen_2173 Pseudomonas mendocina ymp hypothetical protein YP_001187665.1 2398993 R 399739 CDS YP_001187666.1 146307201 5109514 complement(2399615..2401249) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 2401249 5109514 Pmen_2174 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187666.1 2399615 R 399739 CDS YP_001187667.1 146307202 5109515 2401491..2402321 1 NC_009439.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 2402321 5109515 Pmen_2175 Pseudomonas mendocina ymp undecaprenyl pyrophosphate phosphatase YP_001187667.1 2401491 D 399739 CDS YP_001187668.1 146307203 5109516 2402318..2403040 1 NC_009439.1 PFAM: Cold-shock protein, DNA-binding; protein of unknown function DUF1294; SMART: Cold shock protein; hypothetical protein 2403040 5109516 Pmen_2176 Pseudomonas mendocina ymp hypothetical protein YP_001187668.1 2402318 D 399739 CDS YP_001187669.1 146307204 5109517 complement(2403026..2403391) 1 NC_009439.1 PFAM: protein of unknown function DUF419; hypothetical protein 2403391 5109517 Pmen_2177 Pseudomonas mendocina ymp hypothetical protein YP_001187669.1 2403026 R 399739 CDS YP_001187670.1 146307205 5109518 complement(2403411..2404298) 1 NC_009439.1 streptomycin 3'-adenyltransferase; aminoglycoside resistance protein 2404298 5109518 Pmen_2178 Pseudomonas mendocina ymp aminoglycoside resistance protein YP_001187670.1 2403411 R 399739 CDS YP_001187671.1 146307206 5109519 complement(2404436..2405824) 1 NC_009439.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 2405824 5109519 Pmen_2179 Pseudomonas mendocina ymp RND efflux system outer membrane lipoprotein YP_001187671.1 2404436 R 399739 CDS YP_001187672.1 146307207 5109520 complement(2405821..2409000) 1 NC_009439.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 2409000 5109520 Pmen_2180 Pseudomonas mendocina ymp hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001187672.1 2405821 R 399739 CDS YP_001187673.1 146307208 5109521 complement(2409028..2410266) 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2410266 5109521 Pmen_2181 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001187673.1 2409028 R 399739 CDS YP_001187674.1 146307209 5109522 complement(2410437..2411978) 1 NC_009439.1 PFAM: filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein fic 2411978 5109522 Pmen_2182 Pseudomonas mendocina ymp filamentation induced by cAMP protein fic YP_001187674.1 2410437 R 399739 CDS YP_001187675.1 146307210 5109523 complement(2412164..2413078) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2413078 5109523 Pmen_2183 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187675.1 2412164 R 399739 CDS YP_001187676.1 146307211 5109524 2413296..2414318 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2414318 5109524 Pmen_2184 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001187676.1 2413296 D 399739 CDS YP_001187677.1 146307212 5109525 2414379..2415272 1 NC_009439.1 PFAM: response regulator receiver; CheW domain protein; putative CheW protein 2415272 5109525 Pmen_2185 Pseudomonas mendocina ymp putative CheW protein YP_001187677.1 2414379 D 399739 CDS YP_001187678.1 146307213 5109526 2415669..2416538 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2416538 5109526 Pmen_2186 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187678.1 2415669 D 399739 CDS YP_001187679.1 146307214 5109527 complement(2416604..2417989) 1 NC_009439.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; magnesium transporter 2417989 5109527 Pmen_2187 Pseudomonas mendocina ymp magnesium transporter YP_001187679.1 2416604 R 399739 CDS YP_001187680.1 146307215 5109528 complement(2418544..2419833) 1 NC_009439.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2419833 5109528 Pmen_2188 Pseudomonas mendocina ymp FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001187680.1 2418544 R 399739 CDS YP_001187681.1 146307216 5109529 2419870..2421369 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 2421369 5109529 Pmen_2189 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001187681.1 2419870 D 399739 CDS YP_001187682.1 146307217 5109530 complement(2421403..2422656) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 2422656 5109530 Pmen_2190 Pseudomonas mendocina ymp outer membrane porin YP_001187682.1 2421403 R 399739 CDS YP_001187683.1 146307218 5109531 2423069..2423395 1 NC_009439.1 hypothetical protein 2423395 5109531 Pmen_2191 Pseudomonas mendocina ymp hypothetical protein YP_001187683.1 2423069 D 399739 CDS YP_001187684.1 146307219 5109137 2423392..2423811 1 NC_009439.1 hypothetical protein 2423811 5109137 Pmen_2192 Pseudomonas mendocina ymp hypothetical protein YP_001187684.1 2423392 D 399739 CDS YP_001187685.1 146307220 5109138 complement(2423814..2424494) 1 NC_009439.1 ICC-like putative phosphoesterase 2424494 5109138 Pmen_2193 Pseudomonas mendocina ymp ICC-like putative phosphoesterase YP_001187685.1 2423814 R 399739 CDS YP_001187686.1 146307221 5109139 complement(2424508..2427120) 1 NC_009439.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 2427120 5109139 Pmen_2194 Pseudomonas mendocina ymp DEAD/DEAH box helicase YP_001187686.1 2424508 R 399739 CDS YP_001187687.1 146307222 5109140 complement(2427120..2428778) 1 NC_009439.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase 2428778 5109140 Pmen_2195 Pseudomonas mendocina ymp ATP-dependent DNA ligase YP_001187687.1 2427120 R 399739 CDS YP_001187688.1 146307223 5109141 complement(2428775..2429782) 1 NC_009439.1 RNA procession exonuclease-like protein 2429782 5109141 Pmen_2196 Pseudomonas mendocina ymp RNA procession exonuclease-like protein YP_001187688.1 2428775 R 399739 CDS YP_001187689.1 146307224 5109142 2430113..2430433 1 NC_009439.1 PFAM: cytochrome c, class I; cytochrome c, class I 2430433 5109142 Pmen_2197 Pseudomonas mendocina ymp cytochrome c, class I YP_001187689.1 2430113 D 399739 CDS YP_001187690.1 146307225 5109143 2430468..2431001 1 NC_009439.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2431001 5109143 Pmen_2198 Pseudomonas mendocina ymp 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001187690.1 2430468 D 399739 CDS YP_001187691.1 146307226 5109144 2431004..2433196 1 NC_009439.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 2433196 5109144 Pmen_2199 Pseudomonas mendocina ymp molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001187691.1 2431004 D 399739 CDS YP_001187692.1 146307227 5109145 complement(2433238..2434386) 1 NC_009439.1 PFAM: protein of unknown function DUF182; hypothetical protein 2434386 5109145 Pmen_2200 Pseudomonas mendocina ymp hypothetical protein YP_001187692.1 2433238 R 399739 CDS YP_001187693.1 146307228 5109146 2434607..2435509 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2435509 5109146 Pmen_2201 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187693.1 2434607 D 399739 CDS YP_001187694.1 146307229 5109147 complement(2435506..2436027) 1 NC_009439.1 PFAM: DinB family protein; DinB family protein 2436027 5109147 Pmen_2202 Pseudomonas mendocina ymp DinB family protein YP_001187694.1 2435506 R 399739 CDS YP_001187695.1 146307230 5109148 2436352..2438055 1 NC_009439.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2438055 5109148 Pmen_2203 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187695.1 2436352 D 399739 CDS YP_001187696.1 146307231 5109149 complement(2438082..2439017) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2439017 5109149 Pmen_2204 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187696.1 2438082 R 399739 CDS YP_001187697.1 146307232 5109150 complement(2439173..2440075) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2440075 5109150 Pmen_2205 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187697.1 2439173 R 399739 CDS YP_001187698.1 146307233 5109151 2440203..2441033 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Male sterility C-terminal domain; KR; short-chain dehydrogenase/reductase SDR 2441033 5109151 Pmen_2206 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187698.1 2440203 D 399739 CDS YP_001187699.1 146307234 5109152 2441067..2441327 1 NC_009439.1 hypothetical protein 2441327 5109152 Pmen_2207 Pseudomonas mendocina ymp hypothetical protein YP_001187699.1 2441067 D 399739 CDS YP_001187700.1 146307235 5109153 complement(2441715..2441987) 1 NC_009439.1 PFAM: CopG domain protein DNA-binding domain protein; CopG family transcriptional regulator 2441987 5109153 Pmen_2208 Pseudomonas mendocina ymp CopG family transcriptional regulator YP_001187700.1 2441715 R 399739 CDS YP_001187701.1 146307236 5109154 2442547..2442891 1 NC_009439.1 hypothetical protein 2442891 5109154 Pmen_2209 Pseudomonas mendocina ymp hypothetical protein YP_001187701.1 2442547 D 399739 CDS YP_001187702.1 146307237 5109155 2442981..2444243 1 NC_009439.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 2444243 5109155 Pmen_2210 Pseudomonas mendocina ymp outer membrane efflux protein YP_001187702.1 2442981 D 399739 CDS YP_001187703.1 146307238 5109156 2444240..2445700 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2445700 5109156 Pmen_2211 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001187703.1 2444240 D 399739 CDS YP_001187704.1 146307239 5109157 2445697..2448846 1 NC_009439.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux protein 2448846 5109157 Pmen_2212 Pseudomonas mendocina ymp CzcA family heavy metal efflux protein YP_001187704.1 2445697 D 399739 CDS YP_001187705.1 146307240 5109158 2448992..2449324 1 NC_009439.1 hypothetical protein 2449324 5109158 Pmen_2213 Pseudomonas mendocina ymp hypothetical protein YP_001187705.1 2448992 D 399739 CDS YP_001187706.1 146307241 5109159 2449480..2450802 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 2450802 5109159 Pmen_2214 Pseudomonas mendocina ymp outer membrane porin YP_001187706.1 2449480 D 399739 CDS YP_001187707.1 146307242 5109160 complement(2450981..2451442) 1 NC_009439.1 PFAM: protein of unknown function DUF411; hypothetical protein 2451442 5109160 Pmen_2215 Pseudomonas mendocina ymp hypothetical protein YP_001187707.1 2450981 R 399739 CDS YP_001187708.1 146307243 5109161 complement(2451414..2452256) 1 NC_009439.1 hypothetical protein 2452256 5109161 Pmen_2216 Pseudomonas mendocina ymp hypothetical protein YP_001187708.1 2451414 R 399739 CDS YP_001187709.1 146307244 5109162 complement(2452266..2453357) 1 NC_009439.1 PFAM: copper resistance B precursor; copper resistance B 2453357 5109162 Pmen_2217 Pseudomonas mendocina ymp copper resistance B YP_001187709.1 2452266 R 399739 CDS YP_001187710.1 146307245 5109163 complement(2453347..2453658) 1 NC_009439.1 hypothetical protein 2453658 5109163 Pmen_2218 Pseudomonas mendocina ymp hypothetical protein YP_001187710.1 2453347 R 399739 CDS YP_001187711.1 146307246 5109164 complement(2453671..2455485) 1 NC_009439.1 TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; CopA family copper resistance protein 2455485 5109164 Pmen_2219 Pseudomonas mendocina ymp CopA family copper resistance protein YP_001187711.1 2453671 R 399739 CDS YP_001187712.1 146307247 5109165 complement(2455674..2455880) 1 NC_009439.1 hypothetical protein 2455880 5109165 Pmen_2220 Pseudomonas mendocina ymp hypothetical protein YP_001187712.1 2455674 R 399739 CDS YP_001187713.1 146307248 5109166 2456164..2456424 1 NC_009439.1 hypothetical protein 2456424 5109166 Pmen_2221 Pseudomonas mendocina ymp hypothetical protein YP_001187713.1 2456164 D 399739 CDS YP_001187714.1 146307249 5109167 2456469..2457305 1 NC_009439.1 PFAM: protein of unknown function DUF692; hypothetical protein 2457305 5109167 Pmen_2222 Pseudomonas mendocina ymp hypothetical protein YP_001187714.1 2456469 D 399739 CDS YP_001187715.1 146307250 5109168 2457302..2458096 1 NC_009439.1 hypothetical protein 2458096 5109168 Pmen_2223 Pseudomonas mendocina ymp hypothetical protein YP_001187715.1 2457302 D 399739 CDS YP_001187716.1 146307251 5109169 2458147..2458461 1 NC_009439.1 hypothetical protein 2458461 5109169 Pmen_2224 Pseudomonas mendocina ymp hypothetical protein YP_001187716.1 2458147 D 399739 CDS YP_001187717.1 146307252 5109170 complement(2458481..2458681) 1 NC_009439.1 PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2458681 5109170 Pmen_2225 Pseudomonas mendocina ymp heavy metal transport/detoxification protein YP_001187717.1 2458481 R 399739 CDS YP_001187718.1 146307253 5106591 complement(2459164..2459469) 1 NC_009439.1 PFAM: transcriptional regulator PadR family protein; PadR family transcriptional regulator 2459469 5106591 Pmen_2227 Pseudomonas mendocina ymp PadR family transcriptional regulator YP_001187718.1 2459164 R 399739 CDS YP_001187719.1 146307254 5109172 complement(2459480..2460685) 1 NC_009439.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 2460685 5109172 Pmen_2228 Pseudomonas mendocina ymp chromate transporter YP_001187719.1 2459480 R 399739 CDS YP_001187720.1 146307255 5109173 complement(2461028..2463391) 1 NC_009439.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein; copper-translocating P-type ATPase 2463391 5109173 Pmen_2229 Pseudomonas mendocina ymp copper-translocating P-type ATPase YP_001187720.1 2461028 R 399739 CDS YP_001187721.1 146307256 5109174 complement(2463397..2463645) 1 NC_009439.1 hypothetical protein 2463645 5109174 Pmen_2230 Pseudomonas mendocina ymp hypothetical protein YP_001187721.1 2463397 R 399739 CDS YP_001187722.1 146307257 5109175 complement(2463725..2464258) 1 NC_009439.1 PFAM: blue (type 1) copper domain protein; blue (type1) copper domain-containing protein 2464258 5109175 Pmen_2231 Pseudomonas mendocina ymp blue (type1) copper domain-containing protein YP_001187722.1 2463725 R 399739 CDS YP_001187723.1 146307258 5109176 complement(2464406..2464963) 1 NC_009439.1 hypothetical protein 2464963 5109176 Pmen_2232 Pseudomonas mendocina ymp hypothetical protein YP_001187723.1 2464406 R 399739 CDS YP_001187724.1 146307259 5109177 complement(2465130..2465489) 1 NC_009439.1 hypothetical protein 2465489 5109177 Pmen_2233 Pseudomonas mendocina ymp hypothetical protein YP_001187724.1 2465130 R 399739 CDS YP_001187725.1 146307260 5109178 2465696..2466373 1 NC_009439.1 TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 2466373 5109178 Pmen_2234 Pseudomonas mendocina ymp two component heavy metal response transcriptional regulator YP_001187725.1 2465696 D 399739 CDS YP_001187726.1 146307261 5109179 2466376..2467752 1 NC_009439.1 TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; heavy metal sensor signal transduction histidine kinase 2467752 5109179 Pmen_2235 Pseudomonas mendocina ymp heavy metal sensor signal transduction histidine kinase YP_001187726.1 2466376 D 399739 CDS YP_001187727.1 146307262 5109180 complement(2467788..2468408) 1 NC_009439.1 hypothetical protein 2468408 5109180 Pmen_2236 Pseudomonas mendocina ymp hypothetical protein YP_001187727.1 2467788 R 399739 CDS YP_001187728.1 146307263 5109181 complement(2468803..2469045) 1 NC_009439.1 hypothetical protein 2469045 5109181 Pmen_2237 Pseudomonas mendocina ymp hypothetical protein YP_001187728.1 2468803 R 399739 CDS YP_001187729.1 146307264 5109182 complement(2469164..2469550) 1 NC_009439.1 hypothetical protein 2469550 5109182 Pmen_2238 Pseudomonas mendocina ymp hypothetical protein YP_001187729.1 2469164 R 399739 CDS YP_001187730.1 146307265 5109183 complement(2470166..2470846) 1 NC_009439.1 hypothetical protein 2470846 5109183 Pmen_2239 Pseudomonas mendocina ymp hypothetical protein YP_001187730.1 2470166 R 399739 CDS YP_001187731.1 146307266 5109184 complement(2470859..2471596) 1 NC_009439.1 hypothetical protein 2471596 5109184 Pmen_2240 Pseudomonas mendocina ymp hypothetical protein YP_001187731.1 2470859 R 399739 CDS YP_001187732.1 146307267 5109185 complement(2471644..2471985) 1 NC_009439.1 hypothetical protein 2471985 5109185 Pmen_2241 Pseudomonas mendocina ymp hypothetical protein YP_001187732.1 2471644 R 399739 CDS YP_001187733.1 146307268 5109186 2472092..2472385 1 NC_009439.1 PFAM: protein of unknown function DUF156; hypothetical protein 2472385 5109186 Pmen_2242 Pseudomonas mendocina ymp hypothetical protein YP_001187733.1 2472092 D 399739 CDS YP_001187734.1 146307269 5109187 2472394..2473521 1 NC_009439.1 PFAM: high-affinity nickel-transporter; high-affinity nickel-transporter 2473521 5109187 Pmen_2243 Pseudomonas mendocina ymp high-affinity nickel-transporter YP_001187734.1 2472394 D 399739 CDS YP_001187735.1 146307270 5109188 2473522..2473962 1 NC_009439.1 hypothetical protein 2473962 5109188 Pmen_2244 Pseudomonas mendocina ymp hypothetical protein YP_001187735.1 2473522 D 399739 CDS YP_001187736.1 146307271 5109189 2473962..2474663 1 NC_009439.1 PFAM: TraX family protein; TraX family protein 2474663 5109189 Pmen_2245 Pseudomonas mendocina ymp TraX family protein YP_001187736.1 2473962 D 399739 CDS YP_001187737.1 146307272 5109190 complement(2474945..2475268) 1 NC_009439.1 SMART: Rhodanese domain protein; rhodanese domain-containing protein 2475268 5109190 Pmen_2246 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001187737.1 2474945 R 399739 CDS YP_001187738.1 146307273 5109191 complement(2475278..2476639) 1 NC_009439.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 2476639 5109191 Pmen_2247 Pseudomonas mendocina ymp chromate transporter YP_001187738.1 2475278 R 399739 CDS YP_001187739.1 146307274 5109192 complement(2476632..2477552) 1 NC_009439.1 hypothetical protein 2477552 5109192 Pmen_2248 Pseudomonas mendocina ymp hypothetical protein YP_001187739.1 2476632 R 399739 CDS YP_001187740.1 146307275 5109193 complement(2477854..2478813) 1 NC_009439.1 PFAM: phage integrase family protein; phage integrase family protein 2478813 5109193 Pmen_2249 Pseudomonas mendocina ymp phage integrase family protein YP_001187740.1 2477854 R 399739 CDS YP_001187741.1 146307276 5109194 2478996..2479898 1 NC_009439.1 hypothetical protein 2479898 5109194 Pmen_2250 Pseudomonas mendocina ymp hypothetical protein YP_001187741.1 2478996 D 399739 CDS YP_001187742.1 146307277 5109195 complement(2479895..2481163) 1 NC_009439.1 hypothetical protein 2481163 5109195 Pmen_2251 Pseudomonas mendocina ymp hypothetical protein YP_001187742.1 2479895 R 399739 CDS YP_001187743.1 146307278 5109196 complement(2481192..2482139) 1 NC_009439.1 hypothetical protein 2482139 5109196 Pmen_2252 Pseudomonas mendocina ymp hypothetical protein YP_001187743.1 2481192 R 399739 CDS YP_001187744.1 146307279 5109197 complement(2482149..2484056) 1 NC_009439.1 hypothetical protein 2484056 5109197 Pmen_2253 Pseudomonas mendocina ymp hypothetical protein YP_001187744.1 2482149 R 399739 CDS YP_001187745.1 146307280 5109198 2485164..2486336 1 NC_009439.1 hypothetical protein 2486336 5109198 Pmen_2254 Pseudomonas mendocina ymp hypothetical protein YP_001187745.1 2485164 D 399739 CDS YP_001187746.1 146307281 5109199 2486347..2487066 1 NC_009439.1 hypothetical protein 2487066 5109199 Pmen_2255 Pseudomonas mendocina ymp hypothetical protein YP_001187746.1 2486347 D 399739 CDS YP_001187747.1 146307282 5109200 complement(2487157..2487417) 1 NC_009439.1 hypothetical protein 2487417 5109200 Pmen_2256 Pseudomonas mendocina ymp hypothetical protein YP_001187747.1 2487157 R 399739 CDS YP_001187748.1 146307283 5109201 complement(2487457..2487966) 1 NC_009439.1 PFAM: protein of unknown function DUF892; hypothetical protein 2487966 5109201 Pmen_2257 Pseudomonas mendocina ymp hypothetical protein YP_001187748.1 2487457 R 399739 CDS YP_001187749.1 146307284 5109202 complement(2488132..2488413) 1 NC_009439.1 hypothetical protein 2488413 5109202 Pmen_2258 Pseudomonas mendocina ymp hypothetical protein YP_001187749.1 2488132 R 399739 CDS YP_001187750.1 146307285 5106592 2489829..2491130 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2491130 5106592 Pmen_2260 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001187750.1 2489829 D 399739 CDS YP_001187751.1 146307286 5109204 complement(2491546..2492016) 1 NC_009439.1 hypothetical protein 2492016 5109204 Pmen_2261 Pseudomonas mendocina ymp hypothetical protein YP_001187751.1 2491546 R 399739 CDS YP_001187752.1 146307287 5109205 complement(2492103..2492567) 1 NC_009439.1 hypothetical protein 2492567 5109205 Pmen_2262 Pseudomonas mendocina ymp hypothetical protein YP_001187752.1 2492103 R 399739 CDS YP_001187753.1 146307288 5109206 complement(2492697..2493248) 1 NC_009439.1 PFAM: peptidase S14, ClpP; peptidase S14, ClpP 2493248 5109206 Pmen_2263 Pseudomonas mendocina ymp peptidase S14, ClpP YP_001187753.1 2492697 R 399739 CDS YP_001187754.1 146307289 5109207 2493627..2494040 1 NC_009439.1 hypothetical protein 2494040 5109207 Pmen_2264 Pseudomonas mendocina ymp hypothetical protein YP_001187754.1 2493627 D 399739 CDS YP_001187755.1 146307290 5109208 complement(2494120..2494578) 1 NC_009439.1 hypothetical protein 2494578 5109208 Pmen_2265 Pseudomonas mendocina ymp hypothetical protein YP_001187755.1 2494120 R 399739 CDS YP_001187756.1 146307291 5109209 2494600..2495610 1 NC_009439.1 TIGRFAM: cytochrome c, monohaem; PFAM: cytochrome c oxidase, subunit II; mono-heme cytochrome c 2495610 5109209 Pmen_2266 Pseudomonas mendocina ymp mono-heme cytochrome c YP_001187756.1 2494600 D 399739 CDS YP_001187757.1 146307292 5109210 2495607..2498138 1 NC_009439.1 PFAM: cytochrome c oxidase, subunit I; cytochrome-c oxidase 2498138 5109210 Pmen_2267 Pseudomonas mendocina ymp cytochrome-c oxidase YP_001187757.1 2495607 D 399739 CDS YP_001187758.1 146307293 5109211 2498138..2498491 1 NC_009439.1 hypothetical protein 2498491 5109211 Pmen_2268 Pseudomonas mendocina ymp hypothetical protein YP_001187758.1 2498138 D 399739 CDS YP_001187759.1 146307294 5109212 2498482..2499297 1 NC_009439.1 hypothetical protein 2499297 5109212 Pmen_2269 Pseudomonas mendocina ymp hypothetical protein YP_001187759.1 2498482 D 399739 CDS YP_001187760.1 146307295 5109213 2499971..2500423 1 NC_009439.1 hypothetical protein 2500423 5109213 Pmen_2270 Pseudomonas mendocina ymp hypothetical protein YP_001187760.1 2499971 D 399739 CDS YP_001187761.1 146307296 5109214 2500557..2500781 1 NC_009439.1 hypothetical protein 2500781 5109214 Pmen_2271 Pseudomonas mendocina ymp hypothetical protein YP_001187761.1 2500557 D 399739 CDS YP_001187762.1 146307297 5109215 2500886..2501212 1 NC_009439.1 hypothetical protein 2501212 5109215 Pmen_2272 Pseudomonas mendocina ymp hypothetical protein YP_001187762.1 2500886 D 399739 CDS YP_001187763.1 146307298 5108508 complement(2501421..2503562) 1 NC_009439.1 Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; hydroperoxidase II 2503562 katE 5108508 katE Pseudomonas mendocina ymp hydroperoxidase II YP_001187763.1 2501421 R 399739 CDS YP_001187764.1 146307299 5108509 2503837..2504361 1 NC_009439.1 hypothetical protein 2504361 5108509 Pmen_2274 Pseudomonas mendocina ymp hypothetical protein YP_001187764.1 2503837 D 399739 CDS YP_001187765.1 146307300 5108510 2504397..2505527 1 NC_009439.1 PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel protein MscS 2505527 5108510 Pmen_2275 Pseudomonas mendocina ymp mechanosensitive ion channel protein MscS YP_001187765.1 2504397 D 399739 CDS YP_001187766.1 146307301 5108511 complement(2505537..2506019) 1 NC_009439.1 PFAM: CinA domain protein; CinA domain-containing protein 2506019 5108511 Pmen_2276 Pseudomonas mendocina ymp CinA domain-containing protein YP_001187766.1 2505537 R 399739 CDS YP_001187767.1 146307302 5108512 2506271..2507797 1 NC_009439.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 2507797 glgA 5108512 glgA Pseudomonas mendocina ymp glycogen synthase YP_001187767.1 2506271 D 399739 CDS YP_001187768.1 146307303 5108513 2507797..2509551 1 NC_009439.1 TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; malto-oligosyltrehalose trehalohydrolase 2509551 5108513 Pmen_2278 Pseudomonas mendocina ymp malto-oligosyltrehalose trehalohydrolase YP_001187768.1 2507797 D 399739 CDS YP_001187769.1 146307304 5108514 2509548..2511602 1 NC_009439.1 TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 2511602 5108514 Pmen_2279 Pseudomonas mendocina ymp 4-alpha-glucanotransferase YP_001187769.1 2509548 D 399739 CDS YP_001187770.1 146307305 5108515 2511595..2514339 1 NC_009439.1 TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; maltooligosyl trehalose synthase 2514339 5108515 Pmen_2280 Pseudomonas mendocina ymp maltooligosyl trehalose synthase YP_001187770.1 2511595 D 399739 CDS YP_001187771.1 146307306 5108516 2514356..2514625 1 NC_009439.1 hypothetical protein 2514625 5108516 Pmen_2281 Pseudomonas mendocina ymp hypothetical protein YP_001187771.1 2514356 D 399739 CDS YP_001187772.1 146307307 5108517 2514636..2516750 1 NC_009439.1 TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 2516750 5108517 Pmen_2282 Pseudomonas mendocina ymp glycogen debranching protein GlgX YP_001187772.1 2514636 D 399739 CDS YP_001187773.1 146307308 5108518 2517049..2518317 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2518317 5108518 Pmen_2283 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001187773.1 2517049 D 399739 CDS YP_001187774.1 146307309 5108519 2518346..2519134 1 NC_009439.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 2519134 5108519 Pmen_2284 Pseudomonas mendocina ymp endonuclease/exonuclease/phosphatase YP_001187774.1 2518346 D 399739 CDS YP_001187775.1 146307310 5108520 2519131..2520333 1 NC_009439.1 PFAM: phospholipase D/Transphosphatidylase; cardiolipin synthase 2 2520333 5108520 Pmen_2285 Pseudomonas mendocina ymp cardiolipin synthase 2 YP_001187775.1 2519131 D 399739 CDS YP_001187776.1 146307311 5108521 2520330..2521310 1 NC_009439.1 hypothetical protein 2521310 5108521 Pmen_2286 Pseudomonas mendocina ymp hypothetical protein YP_001187776.1 2520330 D 399739 CDS YP_001187777.1 146307312 5108522 2521421..2521678 1 NC_009439.1 hypothetical protein 2521678 5108522 Pmen_2287 Pseudomonas mendocina ymp hypothetical protein YP_001187777.1 2521421 D 399739 CDS YP_001187778.1 146307313 5108523 complement(2521685..2524156) 1 NC_009439.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 2524156 5108523 Pmen_2288 Pseudomonas mendocina ymp glycogen/starch/alpha-glucan phosphorylase YP_001187778.1 2521685 R 399739 CDS YP_001187779.1 146307314 5108524 2524347..2524778 1 NC_009439.1 hypothetical protein 2524778 5108524 Pmen_2289 Pseudomonas mendocina ymp hypothetical protein YP_001187779.1 2524347 D 399739 CDS YP_001187780.1 146307315 5108525 2524775..2525872 1 NC_009439.1 hypothetical protein 2525872 5108525 Pmen_2290 Pseudomonas mendocina ymp hypothetical protein YP_001187780.1 2524775 D 399739 CDS YP_001187781.1 146307316 5108526 2525859..2526629 1 NC_009439.1 dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 2526629 5108526 Pmen_2291 Pseudomonas mendocina ymp dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein YP_001187781.1 2525859 D 399739 CDS YP_001187782.1 146307317 5108527 2526695..2527108 1 NC_009439.1 PFAM: CBS domain containing protein; hypothetical protein 2527108 5108527 Pmen_2292 Pseudomonas mendocina ymp hypothetical protein YP_001187782.1 2526695 D 399739 CDS YP_001187783.1 146307318 5108528 complement(2527253..2529391) 1 NC_009439.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching protein 2529391 5108528 Pmen_2293 Pseudomonas mendocina ymp glycogen branching protein YP_001187783.1 2527253 R 399739 CDS YP_001187784.1 146307319 5108529 complement(2529406..2532708) 1 NC_009439.1 TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase 2532708 5108529 Pmen_2294 Pseudomonas mendocina ymp trehalose synthase YP_001187784.1 2529406 R 399739 CDS YP_001187785.1 146307320 5108530 complement(2532726..2534708) 1 NC_009439.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase 2534708 5108530 Pmen_2295 Pseudomonas mendocina ymp alpha amylase YP_001187785.1 2532726 R 399739 CDS YP_001187786.1 146307321 5108531 complement(2534841..2535365) 1 NC_009439.1 PFAM: MgtC/SapB transporter; MgtC/SapB transporter 2535365 5108531 Pmen_2296 Pseudomonas mendocina ymp MgtC/SapB transporter YP_001187786.1 2534841 R 399739 CDS YP_001187787.1 146307322 5108532 2535535..2535912 1 NC_009439.1 PFAM: Rho termination factor domain protein; Rho termination factor domain-containing protein 2535912 5108532 Pmen_2297 Pseudomonas mendocina ymp Rho termination factor domain-containing protein YP_001187787.1 2535535 D 399739 CDS YP_001187788.1 146307323 5108533 complement(2536026..2536460) 1 NC_009439.1 hypothetical protein 2536460 5108533 Pmen_2298 Pseudomonas mendocina ymp hypothetical protein YP_001187788.1 2536026 R 399739 CDS YP_001187789.1 146307324 5108534 complement(2536522..2536884) 1 NC_009439.1 hypothetical protein 2536884 5108534 Pmen_2299 Pseudomonas mendocina ymp hypothetical protein YP_001187789.1 2536522 R 399739 CDS YP_001187790.1 146307325 5108535 complement(2536985..2538151) 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2538151 5108535 Pmen_2300 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001187790.1 2536985 R 399739 CDS YP_001187791.1 146307326 5108536 complement(2538209..2539345) 1 NC_009439.1 PFAM: glutamate--cysteine ligase, GCS2; glutamate--cysteine ligase 2539345 5108536 Pmen_2301 Pseudomonas mendocina ymp glutamate--cysteine ligase YP_001187791.1 2538209 R 399739 CDS YP_001187792.1 146307327 5108537 2539501..2540901 1 NC_009439.1 hypothetical protein 2540901 5108537 Pmen_2302 Pseudomonas mendocina ymp hypothetical protein YP_001187792.1 2539501 D 399739 CDS YP_001187793.1 146307328 5108538 2540916..2541884 1 NC_009439.1 PFAM: methyltransferase small; methyltransferase small 2541884 5108538 Pmen_2303 Pseudomonas mendocina ymp methyltransferase small YP_001187793.1 2540916 D 399739 CDS YP_001187794.1 146307329 5108539 complement(2541927..2542394) 1 NC_009439.1 PFAM: Hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 2542394 5108539 Pmen_2304 Pseudomonas mendocina ymp hemerythrin HHE cation binding domain-containing protein YP_001187794.1 2541927 R 399739 CDS YP_001187795.1 146307330 5108540 complement(2542473..2542643) 1 NC_009439.1 hypothetical protein 2542643 5108540 Pmen_2305 Pseudomonas mendocina ymp hypothetical protein YP_001187795.1 2542473 R 399739 CDS YP_001187796.1 146307331 5108541 complement(2542758..2543612) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2543612 5108541 Pmen_2306 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001187796.1 2542758 R 399739 CDS YP_001187797.1 146307332 5108542 complement(2543641..2544504) 1 NC_009439.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UDP-glucose pyrophosphorylase 2544504 5108542 Pmen_2307 Pseudomonas mendocina ymp UDP-glucose pyrophosphorylase YP_001187797.1 2543641 R 399739 CDS YP_001187798.1 146307333 5108543 complement(2544657..2544953) 1 NC_009439.1 hypothetical protein 2544953 5108543 Pmen_2308 Pseudomonas mendocina ymp hypothetical protein YP_001187798.1 2544657 R 399739 CDS YP_001187799.1 146307334 5108544 complement(2545010..2545906) 1 NC_009439.1 PFAM: 17 kDa surface antigen; 17 kDa surface antigen 2545906 5108544 Pmen_2309 Pseudomonas mendocina ymp 17 kDa surface antigen YP_001187799.1 2545010 R 399739 CDS YP_001187800.1 146307335 5108545 complement(2545993..2547798) 1 NC_009439.1 PFAM: protein of unknown function DUF323; hypothetical protein 2547798 5108545 Pmen_2310 Pseudomonas mendocina ymp hypothetical protein YP_001187800.1 2545993 R 399739 CDS YP_001187801.1 146307336 5108546 complement(2547791..2548984) 1 NC_009439.1 PFAM: protein of unknown function DUF214; hypothetical protein 2548984 5108546 Pmen_2311 Pseudomonas mendocina ymp hypothetical protein YP_001187801.1 2547791 R 399739 CDS YP_001187802.1 146307337 5108547 complement(2548984..2549688) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2549688 5108547 Pmen_2312 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187802.1 2548984 R 399739 CDS YP_001187803.1 146307338 5108548 complement(2549688..2552744) 1 NC_009439.1 PFAM: protein kinase; tyrosine protein kinase; SMART: von Willebrand factor, type A; serine/threonine protein kinase; protein kinase 2552744 5108548 Pmen_2313 Pseudomonas mendocina ymp protein kinase YP_001187803.1 2549688 R 399739 CDS YP_001187804.1 146307339 5108549 complement(2552760..2553491) 1 NC_009439.1 PFAM: protein phosphatase 2C domain protein; protein phosphatase 2C domain-containing protein 2553491 5108549 Pmen_2314 Pseudomonas mendocina ymp protein phosphatase 2C domain-containing protein YP_001187804.1 2552760 R 399739 CDS YP_001187805.1 146307340 5108550 complement(2553488..2554177) 1 NC_009439.1 hypothetical protein 2554177 5108550 Pmen_2315 Pseudomonas mendocina ymp hypothetical protein YP_001187805.1 2553488 R 399739 CDS YP_001187806.1 146307341 5108551 complement(2554174..2557689) 1 NC_009439.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein 2557689 5108551 Pmen_2316 Pseudomonas mendocina ymp ImcF domain-containing protein YP_001187806.1 2554174 R 399739 CDS YP_001187807.1 146307342 5108552 complement(2557686..2559047) 1 NC_009439.1 PFAM: OmpA/MotB domain protein; hypothetical protein 2559047 5108552 Pmen_2317 Pseudomonas mendocina ymp hypothetical protein YP_001187807.1 2557686 R 399739 CDS YP_001187808.1 146307343 5108553 complement(2559054..2560388) 1 NC_009439.1 PFAM: protein of unknown function DUF876; hypothetical protein 2560388 5108553 Pmen_2318 Pseudomonas mendocina ymp hypothetical protein YP_001187808.1 2559054 R 399739 CDS YP_001187809.1 146307344 5108554 complement(2560409..2560876) 1 NC_009439.1 hypothetical protein 2560876 5108554 Pmen_2319 Pseudomonas mendocina ymp hypothetical protein YP_001187809.1 2560409 R 399739 CDS YP_001187810.1 146307345 5108555 complement(2560951..2562393) 1 NC_009439.1 PFAM: Forkhead-associated protein; FHA domain-containing protein 2562393 5108555 Pmen_2320 Pseudomonas mendocina ymp FHA domain-containing protein YP_001187810.1 2560951 R 399739 CDS YP_001187811.1 146307346 5108556 2562769..2563791 1 NC_009439.1 PFAM: ImpA domain protein; ImpA domain-containing protein 2563791 5108556 Pmen_2321 Pseudomonas mendocina ymp ImpA domain-containing protein YP_001187811.1 2562769 D 399739 CDS YP_001187812.1 146307347 5108557 2563855..2564370 1 NC_009439.1 PFAM: uncharacterised conserved protein UCP028301; hypothetical protein 2564370 5108557 Pmen_2322 Pseudomonas mendocina ymp hypothetical protein YP_001187812.1 2563855 D 399739 CDS YP_001187813.1 146307348 5108558 2564386..2565882 1 NC_009439.1 PFAM: protein of unknown function DUF877; hypothetical protein 2565882 5108558 Pmen_2323 Pseudomonas mendocina ymp hypothetical protein YP_001187813.1 2564386 D 399739 CDS YP_001187814.1 146307349 5108559 2565959..2566447 1 NC_009439.1 PFAM: protein of unknown function DUF796; hypothetical protein 2566447 5108559 Pmen_2324 Pseudomonas mendocina ymp hypothetical protein YP_001187814.1 2565959 D 399739 CDS YP_001187815.1 146307350 5108560 2566521..2566952 1 NC_009439.1 hypothetical protein 2566952 5108560 Pmen_2325 Pseudomonas mendocina ymp hypothetical protein YP_001187815.1 2566521 D 399739 CDS YP_001187816.1 146307351 5108561 2566949..2567395 1 NC_009439.1 hypothetical protein 2567395 5108561 Pmen_2326 Pseudomonas mendocina ymp hypothetical protein YP_001187816.1 2566949 D 399739 CDS YP_001187817.1 146307352 5108562 2567442..2568227 1 NC_009439.1 PFAM: virulence protein, SciE type; virulence protein, SciE type 2568227 5108562 Pmen_2327 Pseudomonas mendocina ymp virulence protein, SciE type YP_001187817.1 2567442 D 399739 CDS YP_001187818.1 146307353 5108563 2568230..2568742 1 NC_009439.1 PFAM: GPW/gp25 family protein; GPW/gp25 family protein 2568742 5108563 Pmen_2328 Pseudomonas mendocina ymp GPW/gp25 family protein YP_001187818.1 2568230 D 399739 CDS YP_001187819.1 146307354 5108564 2568739..2570598 1 NC_009439.1 PFAM: protein of unknown function DUF879; hypothetical protein 2570598 5108564 Pmen_2329 Pseudomonas mendocina ymp hypothetical protein YP_001187819.1 2568739 D 399739 CDS YP_001187820.1 146307355 5108565 2570613..2571599 1 NC_009439.1 PFAM: protein of unknown function DUF1305; hypothetical protein 2571599 5108565 Pmen_2330 Pseudomonas mendocina ymp hypothetical protein YP_001187820.1 2570613 D 399739 CDS YP_001187821.1 146307356 5108566 2571592..2574294 1 NC_009439.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 2574294 5108566 Pmen_2331 Pseudomonas mendocina ymp ATPase YP_001187821.1 2571592 D 399739 CDS YP_001187822.1 146307357 5108567 2574325..2576550 1 NC_009439.1 PFAM: Rhs element Vgr protein; Gp5 domain protein; Rhs element Vgr protein 2576550 5108567 Pmen_2332 Pseudomonas mendocina ymp Rhs element Vgr protein YP_001187822.1 2574325 D 399739 CDS YP_001187823.1 146307358 5108568 2576561..2576995 1 NC_009439.1 hypothetical protein 2576995 5108568 Pmen_2333 Pseudomonas mendocina ymp hypothetical protein YP_001187823.1 2576561 D 399739 CDS YP_001187824.1 146307359 5108569 2577010..2578122 1 NC_009439.1 hypothetical protein 2578122 5108569 Pmen_2334 Pseudomonas mendocina ymp hypothetical protein YP_001187824.1 2577010 D 399739 CDS YP_001187825.1 146307360 5108570 2578122..2579159 1 NC_009439.1 catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase 2579159 5108570 Pmen_2335 Pseudomonas mendocina ymp 3-oxoacyl-(acyl carrier protein) synthase YP_001187825.1 2578122 D 399739 CDS YP_001187826.1 146307361 5108571 2579159..2580244 1 NC_009439.1 hypothetical protein 2580244 5108571 Pmen_2336 Pseudomonas mendocina ymp hypothetical protein YP_001187826.1 2579159 D 399739 CDS YP_001187827.1 146307362 5108572 2580257..2581153 1 NC_009439.1 hypothetical protein 2581153 5108572 Pmen_2337 Pseudomonas mendocina ymp hypothetical protein YP_001187827.1 2580257 D 399739 CDS YP_001187828.1 146307363 5108573 2581197..2582438 1 NC_009439.1 hypothetical protein 2582438 5108573 Pmen_2338 Pseudomonas mendocina ymp hypothetical protein YP_001187828.1 2581197 D 399739 CDS YP_001187829.1 146307364 5108574 complement(2582493..2583542) 1 NC_009439.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; UDP-galactose 4-epimerase 2583542 5108574 Pmen_2339 Pseudomonas mendocina ymp UDP-galactose 4-epimerase YP_001187829.1 2582493 R 399739 CDS YP_001187830.1 146307365 5108575 2583821..2585014 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 2585014 5108575 Pmen_2340 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001187830.1 2583821 D 399739 CDS YP_001187831.1 146307366 5108576 2585002..2586198 1 NC_009439.1 PFAM: UDP-galactopyranose mutase; UDP-galactopyranose mutase 2586198 5108576 Pmen_2341 Pseudomonas mendocina ymp UDP-galactopyranose mutase YP_001187831.1 2585002 D 399739 CDS YP_001187832.1 146307367 5108577 2586208..2587350 1 NC_009439.1 hypothetical protein 2587350 5108577 Pmen_2342 Pseudomonas mendocina ymp hypothetical protein YP_001187832.1 2586208 D 399739 CDS YP_001187833.1 146307368 5108578 2587347..2589122 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2589122 5108578 Pmen_2343 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187833.1 2587347 D 399739 CDS YP_001187834.1 146307369 5108579 2589274..2589579 1 NC_009439.1 hypothetical protein 2589579 5108579 Pmen_2344 Pseudomonas mendocina ymp hypothetical protein YP_001187834.1 2589274 D 399739 CDS YP_001187835.1 146307370 5108580 complement(2589592..2591796) 1 NC_009439.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase, molybdenum binding subunit apoprotein 2591796 5108580 Pmen_2345 Pseudomonas mendocina ymp xanthine dehydrogenase, molybdenum binding subunit apoprotein YP_001187835.1 2589592 R 399739 CDS YP_001187836.1 146307371 5108581 complement(2591793..2592782) 1 NC_009439.1 PFAM: molybdopterin dehydrogenase, FAD-binding; FAD-binding molybdopterin dehydrogenase 2592782 5108581 Pmen_2346 Pseudomonas mendocina ymp FAD-binding molybdopterin dehydrogenase YP_001187836.1 2591793 R 399739 CDS YP_001187837.1 146307372 5108582 complement(2592779..2593288) 1 NC_009439.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 2593288 5108582 Pmen_2347 Pseudomonas mendocina ymp 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001187837.1 2592779 R 399739 CDS YP_001187838.1 146307373 5108583 2593459..2594346 1 NC_009439.1 PFAM: protein of unknown function DUF72; hypothetical protein 2594346 5108583 Pmen_2348 Pseudomonas mendocina ymp hypothetical protein YP_001187838.1 2593459 D 399739 CDS YP_001187839.1 146307374 5108584 complement(2594365..2594742) 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2594742 5108584 Pmen_2349 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001187839.1 2594365 R 399739 CDS YP_001187840.1 146307375 5108585 complement(2594745..2595368) 1 NC_009439.1 PFAM: protein of unknown function UPF0126; hypothetical protein 2595368 5108585 Pmen_2350 Pseudomonas mendocina ymp hypothetical protein YP_001187840.1 2594745 R 399739 CDS YP_001187841.1 146307376 5108193 complement(2595376..2596734) 1 NC_009439.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 2596734 5108193 Pmen_2351 Pseudomonas mendocina ymp glutathione reductase YP_001187841.1 2595376 R 399739 CDS YP_001187842.1 146307377 5108194 2596808..2597230 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2597230 5108194 Pmen_2352 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001187842.1 2596808 D 399739 CDS YP_001187843.1 146307378 5108195 complement(2597315..2598154) 1 NC_009439.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UDP-glucose pyrophosphorylase 2598154 5108195 Pmen_2353 Pseudomonas mendocina ymp UDP-glucose pyrophosphorylase YP_001187843.1 2597315 R 399739 CDS YP_001187844.1 146307379 5108196 complement(2598198..2599559) 1 NC_009439.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; UDP-glucose 6-dehydrogenase 2599559 5108196 Pmen_2354 Pseudomonas mendocina ymp UDP-glucose 6-dehydrogenase YP_001187844.1 2598198 R 399739 CDS YP_001187845.1 146307380 5108197 2599851..2601647 1 NC_009439.1 catalyzes the formation of acetate from pyruvate; thiamine pyrophosphate protein 2601647 5108197 Pmen_2355 Pseudomonas mendocina ymp thiamine pyrophosphate protein YP_001187845.1 2599851 D 399739 CDS YP_001187846.1 146307381 5108198 complement(2601650..2602882) 1 NC_009439.1 PFAM: sodium/hydrogen exchanger; sodium/hydrogen exchanger 2602882 5108198 Pmen_2356 Pseudomonas mendocina ymp sodium/hydrogen exchanger YP_001187846.1 2601650 R 399739 CDS YP_001187847.1 146307382 5108199 2603149..2604126 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2604126 5108199 Pmen_2357 Pseudomonas mendocina ymp short chain dehydrogenase YP_001187847.1 2603149 D 399739 CDS YP_001187848.1 146307383 5108200 complement(2604220..2604549) 1 NC_009439.1 hypothetical protein 2604549 5108200 Pmen_2358 Pseudomonas mendocina ymp hypothetical protein YP_001187848.1 2604220 R 399739 CDS YP_001187849.1 146307384 5108201 2604843..2605019 1 NC_009439.1 hypothetical protein 2605019 5108201 Pmen_2359 Pseudomonas mendocina ymp hypothetical protein YP_001187849.1 2604843 D 399739 CDS YP_001187850.1 146307385 5108202 2605166..2606149 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2606149 5108202 Pmen_2360 Pseudomonas mendocina ymp short chain dehydrogenase YP_001187850.1 2605166 D 399739 CDS YP_001187851.1 146307386 5108203 2606392..2607630 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase type 2 2607630 5108203 Pmen_2361 Pseudomonas mendocina ymp acyl-CoA dehydrogenase type 2 YP_001187851.1 2606392 D 399739 CDS YP_001187852.1 146307387 5108204 2607634..2608833 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase type 2 2608833 5108204 Pmen_2362 Pseudomonas mendocina ymp acyl-CoA dehydrogenase type 2 YP_001187852.1 2607634 D 399739 CDS YP_001187853.1 146307388 5108205 2608833..2610236 1 NC_009439.1 coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein 2610236 5108205 Pmen_2363 Pseudomonas mendocina ymp coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein YP_001187853.1 2608833 D 399739 CDS YP_001187854.1 146307389 5108206 2610291..2611085 1 NC_009439.1 PFAM: NLPA lipoprotein; NLPA lipoprotein 2611085 5108206 Pmen_2364 Pseudomonas mendocina ymp NLPA lipoprotein YP_001187854.1 2610291 D 399739 CDS YP_001187855.1 146307390 5108207 2611087..2612184 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2612184 5108207 Pmen_2365 Pseudomonas mendocina ymp ABC transporter-like protein YP_001187855.1 2611087 D 399739 CDS YP_001187856.1 146307391 5108208 2612168..2612821 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2612821 5108208 Pmen_2366 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001187856.1 2612168 D 399739 CDS YP_001187857.1 146307392 5108209 complement(2613040..2614008) 1 NC_009439.1 PFAM: luciferase family protein; luciferase family protein 2614008 5108209 Pmen_2367 Pseudomonas mendocina ymp luciferase family protein YP_001187857.1 2613040 R 399739 CDS YP_001187858.1 146307393 5108210 complement(2614227..2616008) 1 NC_009439.1 TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; potassium efflux system protein 2616008 5108210 Pmen_2368 Pseudomonas mendocina ymp potassium efflux system protein YP_001187858.1 2614227 R 399739 CDS YP_001187859.1 146307394 5108211 complement(2616332..2616802) 1 NC_009439.1 hypothetical protein 2616802 5108211 Pmen_2369 Pseudomonas mendocina ymp hypothetical protein YP_001187859.1 2616332 R 399739 CDS YP_001187860.1 146307395 5108212 complement(2617040..2619883) 1 NC_009439.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 2619883 5108212 Pmen_2370 Pseudomonas mendocina ymp ATPase YP_001187860.1 2617040 R 399739 CDS YP_001187861.1 146307396 5106597 complement(2621069..2621629) 1 NC_009439.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2621629 5106597 Pmen_2373 Pseudomonas mendocina ymp CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001187861.1 2621069 R 399739 CDS YP_001187862.1 146307397 5108214 complement(2621663..2623486) 1 NC_009439.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2623486 uvrC 5108214 uvrC Pseudomonas mendocina ymp excinuclease ABC subunit C YP_001187862.1 2621663 R 399739 CDS YP_001187863.1 146307398 5108215 complement(2623489..2624133) 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2624133 5108215 Pmen_2375 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001187863.1 2623489 R 399739 CDS YP_001187864.1 146307399 5106598 2624551..2625219 1 NC_009439.1 PFAM: protein of unknown function UPF0005; hypothetical protein 2625219 5106598 Pmen_2376 Pseudomonas mendocina ymp hypothetical protein YP_001187864.1 2624551 D 399739 CDS YP_001187865.1 146307400 5108217 2625355..2625747 1 NC_009439.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 2625747 5108217 Pmen_2377 Pseudomonas mendocina ymp sulfur transfer complex subunit TusD YP_001187865.1 2625355 D 399739 CDS YP_001187866.1 146307401 5108218 2625748..2626107 1 NC_009439.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 2626107 5108218 Pmen_2378 Pseudomonas mendocina ymp sulfur relay protein TusC YP_001187866.1 2625748 D 399739 CDS YP_001187867.1 146307402 5108219 2626107..2626406 1 NC_009439.1 PFAM: DsrH family protein; DsrH family protein 2626406 5108219 Pmen_2379 Pseudomonas mendocina ymp DsrH family protein YP_001187867.1 2626107 D 399739 CDS YP_001187868.1 146307403 5108220 2626403..2626738 1 NC_009439.1 PFAM: DsrC family protein; DsrC family protein 2626738 5108220 Pmen_2380 Pseudomonas mendocina ymp DsrC family protein YP_001187868.1 2626403 D 399739 CDS YP_001187869.1 146307404 5108221 2626735..2627730 1 NC_009439.1 PFAM: glycosyl transferase, family 3; hypothetical protein 2627730 5108221 Pmen_2381 Pseudomonas mendocina ymp hypothetical protein YP_001187869.1 2626735 D 399739 CDS YP_001187870.1 146307405 5108222 2627805..2628803 1 NC_009439.1 PFAM: Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 2628803 5108222 Pmen_2382 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001187870.1 2627805 D 399739 CDS YP_001187871.1 146307406 5108223 complement(2628848..2630236) 1 NC_009439.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase 2630236 5108223 Pmen_2383 Pseudomonas mendocina ymp uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase YP_001187871.1 2628848 R 399739 CDS YP_001187872.1 146307407 5108224 complement(2630393..2631673) 1 NC_009439.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 2631673 5108224 Pmen_2384 Pseudomonas mendocina ymp seryl-tRNA synthetase YP_001187872.1 2630393 R 399739 CDS YP_001187873.1 146307408 5108225 complement(2631752..2632135) 1 NC_009439.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 2632135 5108225 Pmen_2385 Pseudomonas mendocina ymp camphor resistance protein CrcB YP_001187873.1 2631752 R 399739 CDS YP_001187874.1 146307409 5108226 complement(2632132..2633454) 1 NC_009439.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; recombination factor protein RarA 2633454 5108226 Pmen_2386 Pseudomonas mendocina ymp recombination factor protein RarA YP_001187874.1 2632132 R 399739 CDS YP_001187875.1 146307410 5108227 complement(2633458..2634084) 1 NC_009439.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 2634084 lolA 5108227 lolA Pseudomonas mendocina ymp outer-membrane lipoprotein carrier protein YP_001187875.1 2633458 R 399739 CDS YP_001187876.1 146307411 5108228 complement(2634209..2636617) 1 NC_009439.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase FtsK 2636617 5108228 Pmen_2388 Pseudomonas mendocina ymp DNA translocase FtsK YP_001187876.1 2634209 R 399739 CDS YP_001187877.1 146307412 5108229 2636811..2637761 1 NC_009439.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 2637761 5108229 Pmen_2389 Pseudomonas mendocina ymp thioredoxin reductase YP_001187877.1 2636811 D 399739 CDS YP_001187878.1 146307413 5108230 2637817..2638497 1 NC_009439.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2638497 aat 5108230 aat Pseudomonas mendocina ymp leucyl/phenylalanyl-tRNA--protein transferase YP_001187878.1 2637817 D 399739 CDS YP_001187879.1 146307414 5108231 2638552..2639259 1 NC_009439.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 2639259 5108231 Pmen_2391 Pseudomonas mendocina ymp arginyl-tRNA-protein transferase YP_001187879.1 2638552 D 399739 CDS YP_001187880.1 146307415 5108232 2639395..2639613 1 NC_009439.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 2639613 infA 5108232 infA Pseudomonas mendocina ymp translation initiation factor IF-1 YP_001187880.1 2639395 D 399739 CDS YP_001187881.1 146307416 5108233 complement(2639674..2641944) 1 NC_009439.1 TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpA 2641944 5108233 Pmen_2393 Pseudomonas mendocina ymp ATP-dependent Clp protease ATP-binding subunit ClpA YP_001187881.1 2639674 R 399739 CDS YP_001187882.1 146307417 5108234 complement(2641974..2642336) 1 NC_009439.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2642336 clpS 5108234 clpS Pseudomonas mendocina ymp ATP-dependent Clp protease adaptor protein ClpS YP_001187882.1 2641974 R 399739 CDS YP_001187883.1 146307418 5108235 2642568..2642837 1 NC_009439.1 TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein 2642837 5108235 Pmen_2395 Pseudomonas mendocina ymp cold-shock DNA-binding protein family protein YP_001187883.1 2642568 D 399739 CDS YP_001187884.1 146307419 5108236 complement(2642913..2644169) 1 NC_009439.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase 2644169 5108236 Pmen_2396 Pseudomonas mendocina ymp isocitrate dehydrogenase YP_001187884.1 2642913 R 399739 CDS YP_001187885.1 146307420 5108237 2644531..2646759 1 NC_009439.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase 2646759 5108237 Pmen_2397 Pseudomonas mendocina ymp isocitrate dehydrogenase YP_001187885.1 2644531 D 399739 CDS YP_001187886.1 146307421 5108238 2646872..2647312 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 2647312 5108238 Pmen_2398 Pseudomonas mendocina ymp NUDIX hydrolase YP_001187886.1 2646872 D 399739 CDS YP_001187887.1 146307422 5108239 2647440..2648552 1 NC_009439.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2648552 mnmA 5108239 mnmA Pseudomonas mendocina ymp tRNA-specific 2-thiouridylase MnmA YP_001187887.1 2647440 D 399739 CDS YP_001187888.1 146307423 5108240 2648549..2649169 1 NC_009439.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 2649169 5108240 Pmen_2400 Pseudomonas mendocina ymp hypothetical protein YP_001187888.1 2648549 D 399739 CDS YP_001187889.1 146307424 5108241 2649172..2650035 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2650035 5108241 Pmen_2401 Pseudomonas mendocina ymp hypothetical protein YP_001187889.1 2649172 D 399739 CDS YP_001187890.1 146307425 5108242 2650184..2651554 1 NC_009439.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2651554 5108242 Pmen_2402 Pseudomonas mendocina ymp adenylosuccinate lyase YP_001187890.1 2650184 D 399739 CDS YP_001187891.1 146307426 5108243 2651633..2652799 1 NC_009439.1 PFAM: Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; cupin 4 family protein 2652799 5108243 Pmen_2403 Pseudomonas mendocina ymp cupin 4 family protein YP_001187891.1 2651633 D 399739 CDS YP_001187892.1 146307427 5108244 2652792..2653217 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2653217 5108244 Pmen_2404 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001187892.1 2652792 D 399739 CDS YP_001187893.1 146307428 5108245 2653226..2653867 1 NC_009439.1 hypothetical protein 2653867 5108245 Pmen_2405 Pseudomonas mendocina ymp hypothetical protein YP_001187893.1 2653226 D 399739 CDS YP_001187894.1 146307429 5108246 2653864..2654673 1 NC_009439.1 PFAM: NolW domain protein; NolW domain-containing protein 2654673 5108246 Pmen_2406 Pseudomonas mendocina ymp NolW domain-containing protein YP_001187894.1 2653864 D 399739 CDS YP_001187895.1 146307430 5108247 2655232..2656827 1 NC_009439.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 2656827 5108247 Pmen_2407 Pseudomonas mendocina ymp isocitrate lyase YP_001187895.1 2655232 D 399739 CDS YP_001187896.1 146307431 5108248 2657116..2659119 1 NC_009439.1 PFAM: protein of unknown function DUF839; hypothetical protein 2659119 5108248 Pmen_2408 Pseudomonas mendocina ymp hypothetical protein YP_001187896.1 2657116 D 399739 CDS YP_001187897.1 146307432 5108249 2659248..2659886 1 NC_009439.1 hypothetical protein 2659886 5108249 Pmen_2409 Pseudomonas mendocina ymp hypothetical protein YP_001187897.1 2659248 D 399739 CDS YP_001187898.1 146307433 5108250 complement(2659905..2660426) 1 NC_009439.1 hypothetical protein 2660426 5108250 Pmen_2410 Pseudomonas mendocina ymp hypothetical protein YP_001187898.1 2659905 R 399739 CDS YP_001187899.1 146307434 5108251 complement(2660490..2661893) 1 NC_009439.1 hypothetical protein 2661893 5108251 Pmen_2411 Pseudomonas mendocina ymp hypothetical protein YP_001187899.1 2660490 R 399739 CDS YP_001187900.1 146307435 5108252 2662393..2662806 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 2662806 5108252 Pmen_2412 Pseudomonas mendocina ymp NADH dehydrogenase subunit A YP_001187900.1 2662393 D 399739 CDS YP_001187901.1 146307436 5108253 2662817..2663494 1 NC_009439.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 2663494 5108253 Pmen_2413 Pseudomonas mendocina ymp NADH dehydrogenase subunit B YP_001187901.1 2662817 D 399739 CDS YP_001187902.1 146307437 5108254 2663557..2665338 1 NC_009439.1 NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D 2665338 5108254 Pmen_2414 Pseudomonas mendocina ymp bifunctional NADH:ubiquinone oxidoreductase subunit C/D YP_001187902.1 2663557 D 399739 CDS YP_001187903.1 146307438 5108255 2665340..2665852 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 2665852 5108255 Pmen_2415 Pseudomonas mendocina ymp NADH dehydrogenase subunit E YP_001187903.1 2665340 D 399739 CDS YP_001187904.1 146307439 5108256 2665849..2667195 1 NC_009439.1 TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase subunit F 2667195 5108256 Pmen_2416 Pseudomonas mendocina ymp NADH-quinone oxidoreductase subunit F YP_001187904.1 2665849 D 399739 CDS YP_001187905.1 146307440 5108257 2667254..2669962 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 2669962 5108257 Pmen_2417 Pseudomonas mendocina ymp NADH dehydrogenase subunit G YP_001187905.1 2667254 D 399739 CDS YP_001187906.1 146307441 5108258 2669959..2670951 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 2670951 5108258 Pmen_2418 Pseudomonas mendocina ymp NADH dehydrogenase subunit H YP_001187906.1 2669959 D 399739 CDS YP_001187907.1 146307442 5108259 2670965..2671513 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 2671513 5108259 Pmen_2419 Pseudomonas mendocina ymp NADH dehydrogenase subunit I YP_001187907.1 2670965 D 399739 CDS YP_001187908.1 146307443 5108260 2671581..2672090 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 2672090 5108260 Pmen_2420 Pseudomonas mendocina ymp NADH dehydrogenase subunit J YP_001187908.1 2671581 D 399739 CDS YP_001187909.1 146307444 5108261 2672087..2672395 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 2672395 5108261 Pmen_2421 Pseudomonas mendocina ymp NADH dehydrogenase subunit K YP_001187909.1 2672087 D 399739 CDS YP_001187910.1 146307445 5108262 2672392..2674242 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 2674242 5108262 Pmen_2422 Pseudomonas mendocina ymp NADH dehydrogenase subunit L YP_001187910.1 2672392 D 399739 CDS YP_001187911.1 146307446 5108263 2674256..2675785 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 2675785 5108263 Pmen_2423 Pseudomonas mendocina ymp NADH dehydrogenase subunit M YP_001187911.1 2674256 D 399739 CDS YP_001187912.1 146307447 5108264 2675789..2677273 1 NC_009439.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 2677273 5108264 Pmen_2424 Pseudomonas mendocina ymp NADH dehydrogenase subunit N YP_001187912.1 2675789 D 399739 CDS YP_001187913.1 146307448 5108265 complement(2677384..2678145) 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; trans-aconitate 2-methyltransferase 2678145 5108265 Pmen_2425 Pseudomonas mendocina ymp trans-aconitate 2-methyltransferase YP_001187913.1 2677384 R 399739 CDS YP_001187914.1 146307449 5108266 2678449..2679456 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 2679456 5108266 Pmen_2426 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001187914.1 2678449 D 399739 CDS YP_001187915.1 146307450 5108267 complement(2679476..2681527) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; diguanylate cyclase/phosphodiesterase 2681527 5108267 Pmen_2427 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001187915.1 2679476 R 399739 CDS YP_001187916.1 146307451 5108268 complement(2681674..2683203) 1 NC_009439.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 2683203 5108268 Pmen_2428 Pseudomonas mendocina ymp RND efflux system outer membrane lipoprotein YP_001187916.1 2681674 R 399739 CDS YP_001187917.1 146307452 5108269 complement(2683200..2686304) 1 NC_009439.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 2686304 5108269 Pmen_2429 Pseudomonas mendocina ymp acriflavin resistance protein YP_001187917.1 2683200 R 399739 CDS YP_001187918.1 146307453 5108270 complement(2686426..2689518) 1 NC_009439.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 2689518 5108270 Pmen_2430 Pseudomonas mendocina ymp acriflavin resistance protein YP_001187918.1 2686426 R 399739 CDS YP_001187919.1 146307454 5108271 complement(2689515..2690822) 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2690822 5108271 Pmen_2431 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001187919.1 2689515 R 399739 CDS YP_001187920.1 146307455 5107308 complement(2691759..2692259) 1 NC_009439.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; thiol peroxidase 2692259 5107308 Pmen_2432 Pseudomonas mendocina ymp thiol peroxidase YP_001187920.1 2691759 R 399739 CDS YP_001187921.1 146307456 5107309 complement(2692435..2696115) 1 NC_009439.1 PFAM: protein of unknown function DUF490; hypothetical protein 2696115 5107309 Pmen_2433 Pseudomonas mendocina ymp hypothetical protein YP_001187921.1 2692435 R 399739 CDS YP_001187922.1 146307457 5107310 complement(2696112..2697839) 1 NC_009439.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 2697839 5107310 Pmen_2434 Pseudomonas mendocina ymp surface antigen (D15) YP_001187922.1 2696112 R 399739 CDS YP_001187923.1 146307458 5107311 complement(2697907..2698551) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2698551 5107311 Pmen_2435 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001187923.1 2697907 R 399739 CDS YP_001187924.1 146307459 5107312 2698796..2699608 1 NC_009439.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 2699608 5107312 Pmen_2436 Pseudomonas mendocina ymp exonuclease III YP_001187924.1 2698796 D 399739 CDS YP_001187925.1 146307460 5107313 2699711..2701093 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2701093 5107313 Pmen_2437 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001187925.1 2699711 D 399739 CDS YP_001187926.1 146307461 5107314 2701271..2702260 1 NC_009439.1 PFAM: Integral membrane protein TerC; integral membrane protein TerC 2702260 5107314 Pmen_2438 Pseudomonas mendocina ymp integral membrane protein TerC YP_001187926.1 2701271 D 399739 CDS YP_001187927.1 146307462 5107315 complement(2702588..2703817) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2703817 5107315 Pmen_2439 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001187927.1 2702588 R 399739 CDS YP_001187928.1 146307463 5107316 2703958..2704893 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2704893 5107316 Pmen_2440 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001187928.1 2703958 D 399739 CDS YP_001187929.1 146307464 5107317 complement(2704957..2705391) 1 NC_009439.1 PFAM: DoxX family protein; DoxX family protein 2705391 5107317 Pmen_2441 Pseudomonas mendocina ymp DoxX family protein YP_001187929.1 2704957 R 399739 CDS YP_001187930.1 146307465 5107318 complement(2705497..2706912) 1 NC_009439.1 PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 2706912 5107318 Pmen_2442 Pseudomonas mendocina ymp lytic transglycosylase YP_001187930.1 2705497 R 399739 CDS YP_001187931.1 146307466 5107319 2707191..2708018 1 NC_009439.1 PFAM: TatD-related deoxyribonuclease; Sec-independent protein translocase TatD 2708018 5107319 Pmen_2443 Pseudomonas mendocina ymp Sec-independent protein translocase TatD YP_001187931.1 2707191 D 399739 CDS YP_001187932.1 146307467 5107320 2708105..2709574 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2709574 5107320 Pmen_2444 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187932.1 2708105 D 399739 CDS YP_001187933.1 146307468 5107321 2709677..2710039 1 NC_009439.1 hypothetical protein 2710039 5107321 Pmen_2445 Pseudomonas mendocina ymp hypothetical protein YP_001187933.1 2709677 D 399739 CDS YP_001187934.1 146307469 5107322 complement(2710041..2710856) 1 NC_009439.1 Acyl-CoA thioesterase-like protein 2710856 5107322 Pmen_2446 Pseudomonas mendocina ymp Acyl-CoA thioesterase-like protein YP_001187934.1 2710041 R 399739 CDS YP_001187935.1 146307470 5107323 complement(2710945..2711721) 1 NC_009439.1 PFAM: CHAD domain containing protein; CHAD domain-containing protein 2711721 5107323 Pmen_2447 Pseudomonas mendocina ymp CHAD domain-containing protein YP_001187935.1 2710945 R 399739 CDS YP_001187936.1 146307471 5107324 complement(2711798..2713783) 1 NC_009439.1 PFAM: transglutaminase domain protein; transglutaminase domain-containing protein 2713783 5107324 Pmen_2448 Pseudomonas mendocina ymp transglutaminase domain-containing protein YP_001187936.1 2711798 R 399739 CDS YP_001187937.1 146307472 5107325 complement(2713780..2714736) 1 NC_009439.1 PFAM: protein of unknown function DUF58; hypothetical protein 2714736 5107325 Pmen_2449 Pseudomonas mendocina ymp hypothetical protein YP_001187937.1 2713780 R 399739 CDS YP_001187938.1 146307473 5107326 complement(2714736..2715653) 1 NC_009439.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; ATPase 2715653 5107326 Pmen_2450 Pseudomonas mendocina ymp ATPase YP_001187938.1 2714736 R 399739 CDS YP_001187939.1 146307474 5107327 complement(2715749..2717716) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2717716 5107327 Pmen_2451 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187939.1 2715749 R 399739 CDS YP_001187940.1 146307475 5107328 complement(2717838..2718443) 1 NC_009439.1 hypothetical protein 2718443 5107328 Pmen_2452 Pseudomonas mendocina ymp hypothetical protein YP_001187940.1 2717838 R 399739 CDS YP_001187941.1 146307476 5107329 complement(2718443..2718721) 1 NC_009439.1 hypothetical protein 2718721 5107329 Pmen_2453 Pseudomonas mendocina ymp hypothetical protein YP_001187941.1 2718443 R 399739 CDS YP_001187942.1 146307477 5107330 complement(2718762..2719883) 1 NC_009439.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2719883 5107330 Pmen_2454 Pseudomonas mendocina ymp tRNA 2-selenouridine synthase YP_001187942.1 2718762 R 399739 CDS YP_001187943.1 146307478 5107331 complement(2719883..2720917) 1 NC_009439.1 catalyzes the formation of selenophosphate from selenide and ATP; selenophosphate synthetase 2720917 5107331 Pmen_2455 Pseudomonas mendocina ymp selenophosphate synthetase YP_001187943.1 2719883 R 399739 CDS YP_001187944.1 146307479 5107332 2721020..2722030 1 NC_009439.1 PFAM: Patatin; patatin 2722030 5107332 Pmen_2456 Pseudomonas mendocina ymp patatin YP_001187944.1 2721020 D 399739 CDS YP_001187945.1 146307480 5107333 complement(2722037..2723125) 1 NC_009439.1 PFAM: protein of unknown function UPF0118; hypothetical protein 2723125 5107333 Pmen_2457 Pseudomonas mendocina ymp hypothetical protein YP_001187945.1 2722037 R 399739 CDS YP_001187946.1 146307481 5107334 complement(2723200..2724003) 1 NC_009439.1 hypothetical protein 2724003 5107334 Pmen_2458 Pseudomonas mendocina ymp hypothetical protein YP_001187946.1 2723200 R 399739 CDS YP_001187947.1 146307482 5107335 complement(2724159..2725022) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2725022 5107335 Pmen_2459 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001187947.1 2724159 R 399739 CDS YP_001187948.1 146307483 5107336 complement(2725019..2725822) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2725822 5107336 Pmen_2460 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001187948.1 2725019 R 399739 CDS YP_001187949.1 146307484 5107337 complement(2725922..2726554) 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2726554 5107337 Pmen_2461 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001187949.1 2725922 R 399739 CDS YP_001187950.1 146307485 5107338 complement(2726596..2727399) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 2727399 5107338 Pmen_2462 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001187950.1 2726596 R 399739 CDS YP_001187951.1 146307486 5107339 complement(2727458..2727901) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 2727901 5107339 Pmen_2463 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001187951.1 2727458 R 399739 CDS YP_001187952.1 146307487 5107340 complement(2727957..2729624) 1 NC_009439.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2729624 5107340 Pmen_2464 Pseudomonas mendocina ymp AMP-dependent synthetase and ligase YP_001187952.1 2727957 R 399739 CDS YP_001187953.1 146307488 5107341 complement(2729765..2730223) 1 NC_009439.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; phosphohistidine phosphatase SixA 2730223 5107341 Pmen_2465 Pseudomonas mendocina ymp phosphohistidine phosphatase SixA YP_001187953.1 2729765 R 399739 CDS YP_001187954.1 146307489 5107342 complement(2730220..2730567) 1 NC_009439.1 hypothetical protein 2730567 5107342 Pmen_2466 Pseudomonas mendocina ymp hypothetical protein YP_001187954.1 2730220 R 399739 CDS YP_001187955.1 146307490 5107343 complement(2730596..2731618) 1 NC_009439.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2731618 gpsA 5107343 gpsA Pseudomonas mendocina ymp NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001187955.1 2730596 R 399739 CDS YP_001187956.1 146307491 5107344 2731890..2733785 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase 2733785 5107344 Pmen_2468 Pseudomonas mendocina ymp integral membrane sensor hybrid histidine kinase YP_001187956.1 2731890 D 399739 CDS YP_001187957.1 146307492 5107345 2734000..2734515 1 NC_009439.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 2734515 5107345 Pmen_2469 Pseudomonas mendocina ymp 3-hydroxydecanoyl-ACP dehydratase YP_001187957.1 2734000 D 399739 CDS YP_001187958.1 146307493 5107346 2734527..2735747 1 NC_009439.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 2735747 5107346 Pmen_2470 Pseudomonas mendocina ymp 3-oxoacyl-ACP synthase YP_001187958.1 2734527 D 399739 CDS YP_001187959.1 146307494 5107347 complement(2735838..2737115) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2737115 5107347 Pmen_2471 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187959.1 2735838 R 399739 CDS YP_001187960.1 146307495 5107348 complement(2737401..2737751) 1 NC_009439.1 hypothetical protein 2737751 5107348 Pmen_2472 Pseudomonas mendocina ymp hypothetical protein YP_001187960.1 2737401 R 399739 CDS YP_001187961.1 146307496 5107349 complement(2737756..2738436) 1 NC_009439.1 PFAM: Dual specificity protein phosphatase; putative tyrosine phosphatase; protein tyrosine/serine phosphatase 2738436 5107349 Pmen_2473 Pseudomonas mendocina ymp protein tyrosine/serine phosphatase YP_001187961.1 2737756 R 399739 CDS YP_001187962.1 146307497 5107350 complement(2738433..2739158) 1 NC_009439.1 PFAM: phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 2739158 5107350 Pmen_2474 Pseudomonas mendocina ymp PA-phosphatase-like phosphoesterase YP_001187962.1 2738433 R 399739 CDS YP_001187963.1 146307498 5107351 complement(2739168..2741126) 1 NC_009439.1 PFAM: sulfatase; sulfatase 2741126 5107351 Pmen_2475 Pseudomonas mendocina ymp sulfatase YP_001187963.1 2739168 R 399739 CDS YP_001187964.1 146307499 5107352 2741230..2741913 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2741913 5107352 Pmen_2476 Pseudomonas mendocina ymp two component transcriptional regulator YP_001187964.1 2741230 D 399739 CDS YP_001187965.1 146307500 5107353 2741903..2743171 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 2743171 5107353 Pmen_2477 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001187965.1 2741903 D 399739 CDS YP_001187966.1 146307501 5107354 2743253..2743942 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 2743942 5107354 Pmen_2478 Pseudomonas mendocina ymp type 11 methyltransferase YP_001187966.1 2743253 D 399739 CDS YP_001187967.1 146307502 5107355 2743944..2744648 1 NC_009439.1 PFAM: lipopolysaccharide kinase; lipopolysaccharide kinase 2744648 5107355 Pmen_2479 Pseudomonas mendocina ymp lipopolysaccharide kinase YP_001187967.1 2743944 D 399739 CDS YP_001187968.1 146307503 5107356 2744645..2745031 1 NC_009439.1 PFAM: diacylglycerol kinase; diacylglycerol kinase 2745031 5107356 Pmen_2480 Pseudomonas mendocina ymp diacylglycerol kinase YP_001187968.1 2744645 D 399739 CDS YP_001187969.1 146307504 5107357 complement(2745032..2745496) 1 NC_009439.1 hypothetical protein 2745496 5107357 Pmen_2481 Pseudomonas mendocina ymp hypothetical protein YP_001187969.1 2745032 R 399739 CDS YP_001187970.1 146307505 5107358 complement(2745563..2746573) 1 NC_009439.1 PFAM: amidohydrolase 2; amidohydrolase 2 2746573 5107358 Pmen_2482 Pseudomonas mendocina ymp amidohydrolase 2 YP_001187970.1 2745563 R 399739 CDS YP_001187971.1 146307506 5107359 2746806..2748200 1 NC_009439.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2748200 5107359 Pmen_2483 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001187971.1 2746806 D 399739 CDS YP_001187972.1 146307507 5107360 2748260..2748661 1 NC_009439.1 PFAM: OsmC family protein; OsmC family protein 2748661 5107360 Pmen_2484 Pseudomonas mendocina ymp OsmC family protein YP_001187972.1 2748260 D 399739 CDS YP_001187973.1 146307508 5107361 2748658..2749518 1 NC_009439.1 PFAM: Pirin domain protein domain protein; Pirin domain protein; pirin domain-containing protein 2749518 5107361 Pmen_2485 Pseudomonas mendocina ymp pirin domain-containing protein YP_001187973.1 2748658 D 399739 CDS YP_001187974.1 146307509 5107362 2749575..2750387 1 NC_009439.1 hypothetical protein 2750387 5107362 Pmen_2486 Pseudomonas mendocina ymp hypothetical protein YP_001187974.1 2749575 D 399739 CDS YP_001187975.1 146307510 5107363 2750490..2751038 1 NC_009439.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 2751038 5107363 Pmen_2487 Pseudomonas mendocina ymp ECF subfamily RNA polymerase sigma-24 factor YP_001187975.1 2750490 D 399739 CDS YP_001187976.1 146307511 5107364 2751035..2751748 1 NC_009439.1 hypothetical protein 2751748 5107364 Pmen_2488 Pseudomonas mendocina ymp hypothetical protein YP_001187976.1 2751035 D 399739 CDS YP_001187977.1 146307512 5107365 2751913..2752692 1 NC_009439.1 hypothetical protein 2752692 5107365 Pmen_2489 Pseudomonas mendocina ymp hypothetical protein YP_001187977.1 2751913 D 399739 CDS YP_001187978.1 146307513 5107366 complement(2752757..2753545) 1 NC_009439.1 PFAM: dienelactone hydrolase; dienelactone hydrolase 2753545 5107366 Pmen_2490 Pseudomonas mendocina ymp dienelactone hydrolase YP_001187978.1 2752757 R 399739 CDS YP_001187979.1 146307514 5107367 complement(2753801..2755705) 1 NC_009439.1 molecular chaperone; heat shock protein 90 2755705 5107367 Pmen_2491 Pseudomonas mendocina ymp heat shock protein 90 YP_001187979.1 2753801 R 399739 CDS YP_001187980.1 146307515 5107368 complement(2755790..2757037) 1 NC_009439.1 hypothetical protein 2757037 5107368 Pmen_2492 Pseudomonas mendocina ymp hypothetical protein YP_001187980.1 2755790 R 399739 CDS YP_001187981.1 146307516 5107369 complement(2757089..2757535) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 2757535 5107369 Pmen_2493 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001187981.1 2757089 R 399739 CDS YP_001187982.1 146307517 5107370 complement(2757532..2758011) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 2758011 5107370 Pmen_2494 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001187982.1 2757532 R 399739 CDS YP_001187983.1 146307518 5107371 2758195..2758455 1 NC_009439.1 hypothetical protein 2758455 5107371 Pmen_2495 Pseudomonas mendocina ymp hypothetical protein YP_001187983.1 2758195 D 399739 CDS YP_001187984.1 146307519 5107372 complement(2758509..2758901) 1 NC_009439.1 hypothetical protein 2758901 5107372 Pmen_2496 Pseudomonas mendocina ymp hypothetical protein YP_001187984.1 2758509 R 399739 CDS YP_001187985.1 146307520 5107373 complement(2758898..2759632) 1 NC_009439.1 PFAM: protein of unknown function DUF599; hypothetical protein 2759632 5107373 Pmen_2497 Pseudomonas mendocina ymp hypothetical protein YP_001187985.1 2758898 R 399739 CDS YP_001187986.1 146307521 5107374 complement(2759735..2761048) 1 NC_009439.1 PFAM: branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 2761048 5107374 Pmen_2498 Pseudomonas mendocina ymp branched-chain amino acid transport system II carrier protein YP_001187986.1 2759735 R 399739 CDS YP_001187987.1 146307522 5107375 complement(2761526..2762413) 1 NC_009439.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 2762413 5107375 Pmen_2499 Pseudomonas mendocina ymp succinyl-CoA synthetase subunit alpha YP_001187987.1 2761526 R 399739 CDS YP_001187988.1 146307523 5107376 complement(2762413..2763579) 1 NC_009439.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2763579 sucC 5107376 sucC Pseudomonas mendocina ymp succinyl-CoA synthetase subunit beta YP_001187988.1 2762413 R 399739 CDS YP_001187989.1 146307524 5107377 complement(2763820..2765256) 1 NC_009439.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2765256 5107377 Pmen_2501 Pseudomonas mendocina ymp dihydrolipoamide dehydrogenase YP_001187989.1 2763820 R 399739 CDS YP_001187990.1 146307525 5107378 complement(2765323..2766555) 1 NC_009439.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 2766555 5107378 Pmen_2502 Pseudomonas mendocina ymp dihydrolipoamide succinyltransferase YP_001187990.1 2765323 R 399739 CDS YP_001187991.1 146307526 5107379 complement(2766621..2769452) 1 NC_009439.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2769452 sucA 5107379 sucA Pseudomonas mendocina ymp 2-oxoglutarate dehydrogenase E1 component YP_001187991.1 2766621 R 399739 CDS YP_001187992.1 146307527 5107380 complement(2769703..2770410) 1 NC_009439.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2770410 sdhB 5107380 sdhB Pseudomonas mendocina ymp succinate dehydrogenase iron-sulfur subunit YP_001187992.1 2769703 R 399739 CDS YP_001187993.1 146307528 5107381 complement(2770422..2772194) 1 NC_009439.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2772194 sdhA 5107381 sdhA Pseudomonas mendocina ymp succinate dehydrogenase flavoprotein subunit YP_001187993.1 2770422 R 399739 CDS YP_001187994.1 146307529 5107382 complement(2772198..2772566) 1 NC_009439.1 succinate dehydrogenase subunit D 2772566 5107382 Pmen_2506 Pseudomonas mendocina ymp succinate dehydrogenase subunit D YP_001187994.1 2772198 R 399739 CDS YP_001187995.1 146307530 5107383 complement(2772560..2772946) 1 NC_009439.1 PFAM: succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase subunit C 2772946 5107383 Pmen_2507 Pseudomonas mendocina ymp succinate dehydrogenase subunit C YP_001187995.1 2772560 R 399739 CDS YP_001187996.1 146307531 5107384 2773266..2774576 1 NC_009439.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2774576 gltA 5107384 gltA Pseudomonas mendocina ymp type II citrate synthase YP_001187996.1 2773266 D 399739 CDS YP_001187997.1 146307532 5107385 complement(2774659..2775264) 1 NC_009439.1 PFAM: lipid-binding START domain protein; lipid-binding START domain-containing protein 2775264 5107385 Pmen_2509 Pseudomonas mendocina ymp lipid-binding START domain-containing protein YP_001187997.1 2774659 R 399739 CDS YP_001187998.1 146307533 5107386 complement(2775326..2775577) 1 NC_009439.1 PFAM: protein of unknown function UPF0153; hypothetical protein 2775577 5107386 Pmen_2510 Pseudomonas mendocina ymp hypothetical protein YP_001187998.1 2775326 R 399739 CDS YP_001187999.1 146307534 5107978 complement(2775651..2776523) 1 NC_009439.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-binding 6-phosphogluconate dehydrogenase 2776523 5107978 Pmen_2511 Pseudomonas mendocina ymp NAD-binding 6-phosphogluconate dehydrogenase YP_001187999.1 2775651 R 399739 CDS YP_001188000.1 146307535 5107979 2776756..2777304 1 NC_009439.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; exonuclease 2777304 5107979 Pmen_2512 Pseudomonas mendocina ymp exonuclease YP_001188000.1 2776756 D 399739 CDS YP_001188001.1 146307536 5107980 2777370..2777651 1 NC_009439.1 PFAM: protein of unknown function DUF1255; hypothetical protein 2777651 5107980 Pmen_2513 Pseudomonas mendocina ymp hypothetical protein YP_001188001.1 2777370 D 399739 CDS YP_001188002.1 146307537 5107981 2777723..2778574 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2778574 5107981 Pmen_2514 Pseudomonas mendocina ymp hypothetical protein YP_001188002.1 2777723 D 399739 CDS YP_001188003.1 146307538 5107982 complement(2778571..2780334) 1 NC_009439.1 TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 2780334 5107982 Pmen_2515 Pseudomonas mendocina ymp lipid ABC transporter ATPase/inner membrane protein YP_001188003.1 2778571 R 399739 CDS YP_001188004.1 146307539 5107983 complement(2780343..2780750) 1 NC_009439.1 PFAM: DoxX family protein; DoxX family protein 2780750 5107983 Pmen_2516 Pseudomonas mendocina ymp DoxX family protein YP_001188004.1 2780343 R 399739 CDS YP_001188005.1 146307540 5107984 complement(2780743..2781177) 1 NC_009439.1 PFAM: putative thiol-disulphide oxidoreductase DCC; putative thiol-disulfide oxidoreductase DCC 2781177 5107984 Pmen_2517 Pseudomonas mendocina ymp putative thiol-disulfide oxidoreductase DCC YP_001188005.1 2780743 R 399739 CDS YP_001188006.1 146307541 5107985 complement(2781174..2781764) 1 NC_009439.1 PFAM: protein of unknown function DUF1287; hypothetical protein 2781764 5107985 Pmen_2518 Pseudomonas mendocina ymp hypothetical protein YP_001188006.1 2781174 R 399739 CDS YP_001188007.1 146307542 5107986 complement(2781774..2782889) 1 NC_009439.1 PFAM: ATP-NAD/AcoX kinase; ATP-NAD/AcoX kinase 2782889 5107986 Pmen_2519 Pseudomonas mendocina ymp ATP-NAD/AcoX kinase YP_001188007.1 2781774 R 399739 CDS YP_001188008.1 146307543 5107987 2783196..2783375 1 NC_009439.1 hypothetical protein 2783375 5107987 Pmen_2520 Pseudomonas mendocina ymp hypothetical protein YP_001188008.1 2783196 D 399739 CDS YP_001188009.1 146307544 5107988 complement(2783417..2783812) 1 NC_009439.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 2783812 5107988 Pmen_2521 Pseudomonas mendocina ymp methionine sulfoxide reductase B YP_001188009.1 2783417 R 399739 CDS YP_001188010.1 146307545 5107989 2784103..2785314 1 NC_009439.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 2785314 5107989 Pmen_2522 Pseudomonas mendocina ymp aminotransferase AlaT YP_001188010.1 2784103 D 399739 CDS YP_001188011.1 146307546 5107990 2785321..2785773 1 NC_009439.1 hypothetical protein 2785773 5107990 Pmen_2523 Pseudomonas mendocina ymp hypothetical protein YP_001188011.1 2785321 D 399739 CDS YP_001188012.1 146307547 5107991 2785862..2786734 1 NC_009439.1 putative metalloprotease; heat shock protein HtpX 2786734 5107991 Pmen_2524 Pseudomonas mendocina ymp heat shock protein HtpX YP_001188012.1 2785862 D 399739 CDS YP_001188013.1 146307548 5107992 complement(2786863..2787522) 1 NC_009439.1 PFAM: thiopurine S-methyltransferase; thiopurine S-methyltransferase 2787522 5107992 Pmen_2525 Pseudomonas mendocina ymp thiopurine S-methyltransferase YP_001188013.1 2786863 R 399739 CDS YP_001188014.1 146307549 5107993 2787626..2788393 1 NC_009439.1 PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 2788393 5107993 Pmen_2526 Pseudomonas mendocina ymp extradiol ring-cleavage dioxygenase III subunit B YP_001188014.1 2787626 D 399739 CDS YP_001188015.1 146307550 5107994 complement(2788390..2788974) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2788974 5107994 Pmen_2527 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188015.1 2788390 R 399739 CDS YP_001188016.1 146307551 5107995 2789079..2789516 1 NC_009439.1 hypothetical protein 2789516 5107995 Pmen_2528 Pseudomonas mendocina ymp hypothetical protein YP_001188016.1 2789079 D 399739 CDS YP_001188017.1 146307552 5107996 complement(2789550..2790539) 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2790539 5107996 Pmen_2529 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001188017.1 2789550 R 399739 CDS YP_001188018.1 146307553 5107997 complement(2790632..2791651) 1 NC_009439.1 SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 2791651 5107997 Pmen_2530 Pseudomonas mendocina ymp putative periplasmic protease YP_001188018.1 2790632 R 399739 CDS YP_001188019.1 146307554 5107998 2791850..2792548 1 NC_009439.1 PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 2792548 5107998 Pmen_2531 Pseudomonas mendocina ymp phosphoglycerate mutase YP_001188019.1 2791850 D 399739 CDS YP_001188020.1 146307555 5107999 2792607..2792918 1 NC_009439.1 PFAM: Sterol-binding domain protein; sterol-binding domain-containing protein 2792918 5107999 Pmen_2532 Pseudomonas mendocina ymp sterol-binding domain-containing protein YP_001188020.1 2792607 D 399739 CDS YP_001188021.1 146307556 5108000 complement(2793010..2794152) 1 NC_009439.1 hypothetical protein 2794152 5108000 Pmen_2533 Pseudomonas mendocina ymp hypothetical protein YP_001188021.1 2793010 R 399739 CDS YP_001188022.1 146307557 5108001 complement(2794157..2795746) 1 NC_009439.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 2795746 5108001 Pmen_2534 Pseudomonas mendocina ymp aromatic hydrocarbon degradation membrane protein YP_001188022.1 2794157 R 399739 CDS YP_001188023.1 146307558 5108002 complement(2795765..2796766) 1 NC_009439.1 hypothetical protein 2796766 5108002 Pmen_2535 Pseudomonas mendocina ymp hypothetical protein YP_001188023.1 2795765 R 399739 CDS YP_001188024.1 146307559 5108003 complement(2796805..2797566) 1 NC_009439.1 PFAM: peptidase C39, bacteriocin processing; peptidase C39, bacteriocin processing 2797566 5108003 Pmen_2536 Pseudomonas mendocina ymp peptidase C39, bacteriocin processing YP_001188024.1 2796805 R 399739 CDS YP_001188025.1 146307560 5108004 complement(2797651..2798073) 1 NC_009439.1 hypothetical protein 2798073 5108004 Pmen_2537 Pseudomonas mendocina ymp hypothetical protein YP_001188025.1 2797651 R 399739 CDS YP_001188026.1 146307561 5108005 complement(2798314..2801037) 1 NC_009439.1 PFAM: regulatory protein, LuxR; regulatory protein LuxR 2801037 5108005 Pmen_2538 Pseudomonas mendocina ymp regulatory protein LuxR YP_001188026.1 2798314 R 399739 CDS YP_001188027.1 146307562 5108006 complement(2801034..2803748) 1 NC_009439.1 PFAM: regulatory protein, LuxR; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; regulatory protein LuxR 2803748 5108006 Pmen_2539 Pseudomonas mendocina ymp regulatory protein LuxR YP_001188027.1 2801034 R 399739 CDS YP_001188028.1 146307563 5108007 2803864..2805264 1 NC_009439.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; aminodeoxychorismate synthase subunit I 2805264 5108007 Pmen_2540 Pseudomonas mendocina ymp aminodeoxychorismate synthase subunit I YP_001188028.1 2803864 D 399739 CDS YP_001188029.1 146307564 5108008 complement(2805332..2806495) 1 NC_009439.1 PFAM: fatty acid desaturase; fatty acid desaturase 2806495 5108008 Pmen_2541 Pseudomonas mendocina ymp fatty acid desaturase YP_001188029.1 2805332 R 399739 CDS YP_001188030.1 146307565 5108009 complement(2806535..2807569) 1 NC_009439.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit 2807569 5108009 Pmen_2542 Pseudomonas mendocina ymp oxidoreductase FAD/NAD(P)-binding subunit YP_001188030.1 2806535 R 399739 CDS YP_001188031.1 146307566 5108010 2807720..2808730 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2808730 5108010 Pmen_2543 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188031.1 2807720 D 399739 CDS YP_001188032.1 146307567 5108011 complement(2808796..2809413) 1 NC_009439.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity; phosphoserine phosphatase 2809413 thrH 5108011 thrH Pseudomonas mendocina ymp phosphoserine phosphatase YP_001188032.1 2808796 R 399739 CDS YP_001188033.1 146307568 5108012 2809590..2810210 1 NC_009439.1 PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase 2810210 5108012 Pmen_2545 Pseudomonas mendocina ymp phosphoadenylylsulfate reductase YP_001188033.1 2809590 D 399739 CDS YP_001188034.1 146307569 5108013 complement(2810274..2811248) 1 NC_009439.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 2811248 cysB 5108013 cysB Pseudomonas mendocina ymp transcriptional regulator CysB YP_001188034.1 2810274 R 399739 CDS YP_001188035.1 146307570 5108014 complement(2811354..2811854) 1 NC_009439.1 PFAM: UspA domain protein; UspA domain-containing protein 2811854 5108014 Pmen_2547 Pseudomonas mendocina ymp UspA domain-containing protein YP_001188035.1 2811354 R 399739 CDS YP_001188036.1 146307571 5108015 complement(2812035..2812940) 1 NC_009439.1 PFAM: 5-nucleotidase; 5'-nucleotidase 2812940 5108015 Pmen_2548 Pseudomonas mendocina ymp 5'-nucleotidase YP_001188036.1 2812035 R 399739 CDS YP_001188037.1 146307572 5108016 complement(2812943..2813896) 1 NC_009439.1 catalyzes the formation of 2-dehydropantoate from (R)-pantoate; 2-dehydropantoate 2-reductase 2813896 5108016 Pmen_2549 Pseudomonas mendocina ymp 2-dehydropantoate 2-reductase YP_001188037.1 2812943 R 399739 CDS YP_001188038.1 146307573 5108017 complement(2813896..2814222) 1 NC_009439.1 hypothetical protein 2814222 5108017 Pmen_2550 Pseudomonas mendocina ymp hypothetical protein YP_001188038.1 2813896 R 399739 CDS YP_001188039.1 146307574 5108018 2814281..2814694 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 2814694 5108018 Pmen_2551 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001188039.1 2814281 D 399739 CDS YP_001188040.1 146307575 5108019 2814844..2815932 1 NC_009439.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 2815932 5108019 Pmen_2552 Pseudomonas mendocina ymp phospho-2-dehydro-3-deoxyheptonate aldolase YP_001188040.1 2814844 D 399739 CDS YP_001188041.1 146307576 5108020 complement(2816047..2816331) 1 NC_009439.1 acetyltransferase-like protein 2816331 5108020 Pmen_2553 Pseudomonas mendocina ymp acetyltransferase-like protein YP_001188041.1 2816047 R 399739 CDS YP_001188042.1 146307577 5108021 complement(2816473..2817846) 1 NC_009439.1 PFAM: Gluconate transporter; Citrate transporter; citrate transporter 2817846 5108021 Pmen_2554 Pseudomonas mendocina ymp citrate transporter YP_001188042.1 2816473 R 399739 CDS YP_001188043.1 146307578 5108022 2818126..2818377 1 NC_009439.1 hypothetical protein 2818377 5108022 Pmen_2555 Pseudomonas mendocina ymp hypothetical protein YP_001188043.1 2818126 D 399739 CDS YP_001188044.1 146307579 5108023 complement(2818529..2819485) 1 NC_009439.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 2819485 5108023 Pmen_2556 Pseudomonas mendocina ymp ErfK/YbiS/YcfS/YnhG family protein YP_001188044.1 2818529 R 399739 CDS YP_001188045.1 146307580 5108024 complement(2819556..2819837) 1 NC_009439.1 hypothetical protein 2819837 5108024 Pmen_2557 Pseudomonas mendocina ymp hypothetical protein YP_001188045.1 2819556 R 399739 CDS YP_001188046.1 146307581 5108025 complement(2819894..2820499) 1 NC_009439.1 PFAM: lipolytic enzyme, G-D-S-L family; lysophospholipase 2820499 5108025 Pmen_2558 Pseudomonas mendocina ymp lysophospholipase YP_001188046.1 2819894 R 399739 CDS YP_001188047.1 146307582 5108026 2820510..2821193 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2821193 5108026 Pmen_2559 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188047.1 2820510 D 399739 CDS YP_001188048.1 146307583 5108027 2821193..2823697 1 NC_009439.1 PFAM: protein of unknown function DUF214; hypothetical protein 2823697 5108027 Pmen_2560 Pseudomonas mendocina ymp hypothetical protein YP_001188048.1 2821193 D 399739 CDS YP_001188049.1 146307584 5108028 2823752..2824249 1 NC_009439.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 2824249 greB 5108028 greB Pseudomonas mendocina ymp transcription elongation factor GreB YP_001188049.1 2823752 D 399739 CDS YP_001188050.1 146307585 5108029 complement(2824350..2824658) 1 NC_009439.1 hypothetical protein 2824658 5108029 Pmen_2562 Pseudomonas mendocina ymp hypothetical protein YP_001188050.1 2824350 R 399739 CDS YP_001188051.1 146307586 5108030 2824851..2825396 1 NC_009439.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; 2'-5' RNA ligase 2825396 5108030 Pmen_2563 Pseudomonas mendocina ymp 2'-5' RNA ligase YP_001188051.1 2824851 D 399739 CDS YP_001188052.1 146307587 5108031 2825589..2826542 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; triacylglycerol lipase 2826542 5108031 Pmen_2564 Pseudomonas mendocina ymp triacylglycerol lipase YP_001188052.1 2825589 D 399739 CDS YP_001188053.1 146307588 5108032 2826660..2827679 1 NC_009439.1 acts as a molecular chaperone to fold and export lipase A; lipase chaperone 2827679 5108032 Pmen_2565 Pseudomonas mendocina ymp lipase chaperone YP_001188053.1 2826660 D 399739 CDS YP_001188054.1 146307589 5108033 complement(2827684..2828703) 1 NC_009439.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2828703 5108033 Pmen_2566 Pseudomonas mendocina ymp periplasmic binding protein/LacI transcriptional regulator YP_001188054.1 2827684 R 399739 CDS YP_001188055.1 146307590 5108034 complement(2828827..2829840) 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 2829840 5108034 Pmen_2567 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001188055.1 2828827 R 399739 CDS YP_001188056.1 146307591 5108035 complement(2829898..2831175) 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 2831175 5108035 Pmen_2568 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctM YP_001188056.1 2829898 R 399739 CDS YP_001188057.1 146307592 5108036 complement(2831225..2832346) 1 NC_009439.1 TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; Tripartite ATP-independent periplasmic transporter, DctQ component; carbohydrate kinase 2832346 5108036 Pmen_2569 Pseudomonas mendocina ymp carbohydrate kinase YP_001188057.1 2831225 R 399739 CDS YP_001188058.1 146307593 5108037 2832542..2834626 1 NC_009439.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 2834626 5108037 Pmen_2570 Pseudomonas mendocina ymp TonB-dependent receptor YP_001188058.1 2832542 D 399739 CDS YP_001188059.1 146307594 5108038 complement(2834762..2836147) 1 NC_009439.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2836147 cysS 5108038 cysS Pseudomonas mendocina ymp cysteinyl-tRNA synthetase YP_001188059.1 2834762 R 399739 CDS YP_001188060.1 146307595 5108039 complement(2836148..2837815) 1 NC_009439.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2837815 5108039 Pmen_2572 Pseudomonas mendocina ymp glutaminyl-tRNA synthetase YP_001188060.1 2836148 R 399739 CDS YP_001188061.1 146307596 5108040 2837942..2838472 1 NC_009439.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase 2838472 5108040 Pmen_2573 Pseudomonas mendocina ymp cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001188061.1 2837942 D 399739 CDS YP_001188062.1 146307597 5108041 2838477..2839205 1 NC_009439.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 2839205 5108041 Pmen_2574 Pseudomonas mendocina ymp UDP-2,3-diacylglucosamine hydrolase YP_001188062.1 2838477 D 399739 CDS YP_001188063.1 146307598 5108042 complement(2839393..2840070) 1 NC_009439.1 PFAM: tRNA--hydroxylase; tRNA--hydroxylase 2840070 5108042 Pmen_2575 Pseudomonas mendocina ymp tRNA--hydroxylase YP_001188063.1 2839393 R 399739 CDS YP_001188064.1 146307599 5108043 2840228..2841091 1 NC_009439.1 PFAM: UspA domain protein; UspA domain-containing protein 2841091 5108043 Pmen_2576 Pseudomonas mendocina ymp UspA domain-containing protein YP_001188064.1 2840228 D 399739 CDS YP_001188065.1 146307600 5108044 complement(2841150..2841626) 1 NC_009439.1 PFAM: protein of unknown function DUF1289; hypothetical protein 2841626 5108044 Pmen_2577 Pseudomonas mendocina ymp hypothetical protein YP_001188065.1 2841150 R 399739 CDS YP_001188066.2 162286124 5108045 2842030..2844630 1 NC_009439.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 2844630 5108045 Pmen_2578 Pseudomonas mendocina ymp bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_001188066.2 2842030 D 399739 CDS YP_001188067.1 146307602 5108046 2844776..2844985 1 NC_009439.1 PFAM: protein of unknown function DUF903; hypothetical protein 2844985 5108046 Pmen_2579 Pseudomonas mendocina ymp hypothetical protein YP_001188067.1 2844776 D 399739 CDS YP_001188068.1 146307603 5108047 2845211..2846422 1 NC_009439.1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 2846422 5108047 Pmen_2580 Pseudomonas mendocina ymp nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_001188068.1 2845211 D 399739 CDS YP_001188069.1 146307604 5108048 2846442..2847020 1 NC_009439.1 PFAM: response regulator receiver; ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 2847020 5108048 Pmen_2581 Pseudomonas mendocina ymp response regulator receiver/ANTAR domain-containing protein YP_001188069.1 2846442 D 399739 CDS YP_001188070.1 146307605 5108049 2847259..2848371 1 NC_009439.1 hypothetical protein 2848371 5108049 Pmen_2582 Pseudomonas mendocina ymp hypothetical protein YP_001188070.1 2847259 D 399739 CDS YP_001188071.1 146307606 5108050 2848525..2849754 1 NC_009439.1 PFAM: aminotransferase, class I and II; aminotransferase 2849754 5108050 Pmen_2583 Pseudomonas mendocina ymp aminotransferase YP_001188071.1 2848525 D 399739 CDS YP_001188072.1 146307607 5108051 2849916..2850638 1 NC_009439.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2850638 5108051 Pmen_2584 Pseudomonas mendocina ymp 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001188072.1 2849916 D 399739 CDS YP_001188073.1 146307608 5108052 2850784..2850978 1 NC_009439.1 hypothetical protein 2850978 5108052 Pmen_2585 Pseudomonas mendocina ymp hypothetical protein YP_001188073.1 2850784 D 399739 CDS YP_001188074.1 146307609 5108053 2850987..2851229 1 NC_009439.1 hypothetical protein 2851229 5108053 Pmen_2586 Pseudomonas mendocina ymp hypothetical protein YP_001188074.1 2850987 D 399739 CDS YP_001188075.1 146307610 5108054 complement(2851272..2851997) 1 NC_009439.1 PFAM: glutamine amidotransferase class-I; amidotransferase 2851997 5108054 Pmen_2587 Pseudomonas mendocina ymp amidotransferase YP_001188075.1 2851272 R 399739 CDS YP_001188076.1 146307611 5108055 2852429..2852629 1 NC_009439.1 hypothetical protein 2852629 5108055 Pmen_2588 Pseudomonas mendocina ymp hypothetical protein YP_001188076.1 2852429 D 399739 CDS YP_001188077.1 146307612 5107899 2852684..2852950 1 NC_009439.1 hypothetical protein 2852950 5107899 Pmen_2589 Pseudomonas mendocina ymp hypothetical protein YP_001188077.1 2852684 D 399739 CDS YP_001188078.1 146307613 5107900 complement(2853047..2855191) 1 NC_009439.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase 2855191 5107900 Pmen_2590 Pseudomonas mendocina ymp short chain enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase YP_001188078.1 2853047 R 399739 CDS YP_001188079.1 146307614 5107901 complement(2855353..2856558) 1 NC_009439.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2856558 5107901 Pmen_2591 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001188079.1 2855353 R 399739 CDS YP_001188080.1 146307615 5107902 2857246..2857605 1 NC_009439.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 2857605 5107902 Pmen_2592 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001188080.1 2857246 D 399739 CDS YP_001188081.1 146307616 5107903 2857602..2858411 1 NC_009439.1 hypothetical protein 2858411 5107903 Pmen_2593 Pseudomonas mendocina ymp hypothetical protein YP_001188081.1 2857602 D 399739 CDS YP_001188082.1 146307617 5107904 complement(2858490..2858879) 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2858879 5107904 Pmen_2594 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001188082.1 2858490 R 399739 CDS YP_001188083.1 146307618 5107905 complement(2858991..2859788) 1 NC_009439.1 PFAM: transglutaminase domain protein; transglutaminase, N-terminal domain protein; transglutaminase domain-containing protein 2859788 5107905 Pmen_2595 Pseudomonas mendocina ymp transglutaminase domain-containing protein YP_001188083.1 2858991 R 399739 CDS YP_001188084.1 146307619 5107906 complement(2859785..2860735) 1 NC_009439.1 PFAM: protein of unknown function DUF403; hypothetical protein 2860735 5107906 Pmen_2596 Pseudomonas mendocina ymp hypothetical protein YP_001188084.1 2859785 R 399739 CDS YP_001188085.1 146307620 5107907 complement(2860739..2862148) 1 NC_009439.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; hypothetical protein 2862148 5107907 Pmen_2597 Pseudomonas mendocina ymp hypothetical protein YP_001188085.1 2860739 R 399739 CDS YP_001188086.1 146307621 5107908 complement(2862541..2863215) 1 NC_009439.1 alpha/beta-hydrolase fold-like hydrolase 2863215 5107908 Pmen_2598 Pseudomonas mendocina ymp alpha/beta-hydrolase fold-like hydrolase YP_001188086.1 2862541 R 399739 CDS YP_001188087.1 146307622 5107909 2863317..2864756 1 NC_009439.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; cytochrome c oxidase, cbb3-type subunit I 2864756 5107909 Pmen_2599 Pseudomonas mendocina ymp cytochrome c oxidase, cbb3-type subunit I YP_001188087.1 2863317 D 399739 CDS YP_001188088.1 146307623 5107910 2864756..2865364 1 NC_009439.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2865364 5107910 Pmen_2600 Pseudomonas mendocina ymp cbb3-type cytochrome c oxidase subunit II YP_001188088.1 2864756 D 399739 CDS YP_001188089.1 146307624 5107911 2865370..2865549 1 NC_009439.1 PFAM: Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2865549 5107911 Pmen_2601 Pseudomonas mendocina ymp cbb3-type cytochrome oxidase subunit YP_001188089.1 2865370 D 399739 CDS YP_001188090.1 146307625 5107912 2865546..2866472 1 NC_009439.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III 2866472 5107912 Pmen_2602 Pseudomonas mendocina ymp cytochrome c oxidase, cbb3-type subunit III YP_001188090.1 2865546 D 399739 CDS YP_001188091.1 146307626 5107913 2866523..2866801 1 NC_009439.1 hypothetical protein 2866801 5107913 Pmen_2603 Pseudomonas mendocina ymp hypothetical protein YP_001188091.1 2866523 D 399739 CDS YP_001188092.1 146307627 5107914 2866818..2868260 1 NC_009439.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 2868260 5107914 Pmen_2604 Pseudomonas mendocina ymp cbb3-type cytochrome c oxidase subunit I YP_001188092.1 2866818 D 399739 CDS YP_001188093.1 146307628 5107915 2868260..2868868 1 NC_009439.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 2868868 5107915 Pmen_2605 Pseudomonas mendocina ymp cbb3-type cytochrome c oxidase subunit II YP_001188093.1 2868260 D 399739 CDS YP_001188094.1 146307629 5107916 2868875..2869069 1 NC_009439.1 PFAM: Cbb3-type cytochrome oxidase component; cbb3-type cytochrome oxidase subunit 2869069 5107916 Pmen_2606 Pseudomonas mendocina ymp cbb3-type cytochrome oxidase subunit YP_001188094.1 2868875 D 399739 CDS YP_001188095.1 146307630 5107917 2869066..2870064 1 NC_009439.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; cytochrome c oxidase, cbb3-type subunit III 2870064 5107917 Pmen_2607 Pseudomonas mendocina ymp cytochrome c oxidase, cbb3-type subunit III YP_001188095.1 2869066 D 399739 CDS YP_001188096.1 146307631 5107918 2870220..2871632 1 NC_009439.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 2871632 5107918 Pmen_2608 Pseudomonas mendocina ymp 4Fe-4S ferredoxin YP_001188096.1 2870220 D 399739 CDS YP_001188097.1 146307632 5107919 2871646..2872164 1 NC_009439.1 hypothetical protein 2872164 5107919 Pmen_2609 Pseudomonas mendocina ymp hypothetical protein YP_001188097.1 2871646 D 399739 CDS YP_001188098.1 146307633 5107920 2872173..2874581 1 NC_009439.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 2874581 5107920 Pmen_2610 Pseudomonas mendocina ymp heavy metal translocating P-type ATPase YP_001188098.1 2872173 D 399739 CDS YP_001188099.1 146307634 5107921 2874602..2874808 1 NC_009439.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cbb3-type cytochrome oxidase maturation protein 2874808 5107921 Pmen_2611 Pseudomonas mendocina ymp cbb3-type cytochrome oxidase maturation protein YP_001188099.1 2874602 D 399739 CDS YP_001188100.1 146307635 5107922 2874801..2875484 1 NC_009439.1 hypothetical protein 2875484 5107922 Pmen_2612 Pseudomonas mendocina ymp hypothetical protein YP_001188100.1 2874801 D 399739 CDS YP_001188101.1 146307636 5107923 2875652..2877034 1 NC_009439.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2877034 5107923 Pmen_2613 Pseudomonas mendocina ymp coproporphyrinogen III oxidase YP_001188101.1 2875652 D 399739 CDS YP_001188102.1 146307637 5107924 complement(2877062..2877505) 1 NC_009439.1 hypothetical protein 2877505 5107924 Pmen_2614 Pseudomonas mendocina ymp hypothetical protein YP_001188102.1 2877062 R 399739 CDS YP_001188103.1 146307638 5107925 2877658..2878392 1 NC_009439.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 2878392 5107925 Pmen_2615 Pseudomonas mendocina ymp CRP/FNR family transcriptional regulator YP_001188103.1 2877658 D 399739 CDS YP_001188104.1 146307639 5107926 2878437..2878985 1 NC_009439.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2878985 5107926 Pmen_2616 Pseudomonas mendocina ymp adenine phosphoribosyltransferase YP_001188104.1 2878437 D 399739 CDS YP_001188105.1 146307640 5107927 2879079..2879897 1 NC_009439.1 PFAM: Ion transport protein; Ion transport protein 2879897 5107927 Pmen_2617 Pseudomonas mendocina ymp Ion transport protein YP_001188105.1 2879079 D 399739 CDS YP_001188106.1 146307641 5107928 2880122..2880958 1 NC_009439.1 metal-dependent hydrolase-like protein 2880958 5107928 Pmen_2618 Pseudomonas mendocina ymp metal-dependent hydrolase-like protein YP_001188106.1 2880122 D 399739 CDS YP_001188107.1 146307642 5107929 complement(2881069..2881776) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2881776 5107929 Pmen_2619 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188107.1 2881069 R 399739 CDS YP_001188108.1 146307643 5107930 2881893..2883446 1 NC_009439.1 cyclohexanone monooxygenase 2883446 5107930 Pmen_2620 Pseudomonas mendocina ymp cyclohexanone monooxygenase YP_001188108.1 2881893 D 399739 CDS YP_001188109.1 146307644 5107931 2883443..2884330 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2884330 5107931 Pmen_2621 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188109.1 2883443 D 399739 CDS YP_001188110.1 146307645 5107932 2884529..2884777 1 NC_009439.1 hypothetical protein 2884777 5107932 Pmen_2622 Pseudomonas mendocina ymp hypothetical protein YP_001188110.1 2884529 D 399739 CDS YP_001188111.1 146307646 5107933 complement(2884915..2885130) 1 NC_009439.1 hypothetical protein 2885130 5107933 Pmen_2623 Pseudomonas mendocina ymp hypothetical protein YP_001188111.1 2884915 R 399739 CDS YP_001188112.1 146307647 5107934 complement(2885177..2885770) 1 NC_009439.1 PFAM: DSBA oxidoreductase; DSBA oxidoreductase 2885770 5107934 Pmen_2624 Pseudomonas mendocina ymp DSBA oxidoreductase YP_001188112.1 2885177 R 399739 CDS YP_001188113.1 146307648 5107935 complement(2885814..2886545) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2886545 5107935 Pmen_2625 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188113.1 2885814 R 399739 CDS YP_001188114.1 146307649 5107936 2886636..2887202 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2887202 5107936 Pmen_2626 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188114.1 2886636 D 399739 CDS YP_001188115.1 146307650 5107937 2887251..2887901 1 NC_009439.1 PFAM: protein of unknown function DUF480; hypothetical protein 2887901 5107937 Pmen_2627 Pseudomonas mendocina ymp hypothetical protein YP_001188115.1 2887251 D 399739 CDS YP_001188116.1 146307651 5107938 2887901..2888248 1 NC_009439.1 hypothetical protein 2888248 5107938 Pmen_2628 Pseudomonas mendocina ymp hypothetical protein YP_001188116.1 2887901 D 399739 CDS YP_001188117.1 146307652 5107939 2888315..2888797 1 NC_009439.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2888797 5107939 Pmen_2629 Pseudomonas mendocina ymp MarR family transcriptional regulator YP_001188117.1 2888315 D 399739 CDS YP_001188118.1 146307653 5107940 2889175..2889600 1 NC_009439.1 PFAM: OsmC family protein; OsmC family protein 2889600 5107940 Pmen_2630 Pseudomonas mendocina ymp OsmC family protein YP_001188118.1 2889175 D 399739 CDS YP_001188119.1 146307654 5107941 2889658..2889918 1 NC_009439.1 hypothetical protein 2889918 5107941 Pmen_2631 Pseudomonas mendocina ymp hypothetical protein YP_001188119.1 2889658 D 399739 CDS YP_001188120.1 146307655 5107942 2889952..2890968 1 NC_009439.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 2890968 5107942 Pmen_2632 Pseudomonas mendocina ymp alpha/beta hydrolase domain-containing protein YP_001188120.1 2889952 D 399739 CDS YP_001188121.1 146307656 5107943 complement(2891056..2892423) 1 NC_009439.1 PFAM: aminotransferase class-III; putative aminotransferase 2892423 5107943 Pmen_2633 Pseudomonas mendocina ymp putative aminotransferase YP_001188121.1 2891056 R 399739 CDS YP_001188122.1 146307657 5107944 complement(2892447..2893793) 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 2893793 5107944 Pmen_2634 Pseudomonas mendocina ymp glutamate--putrescine ligase YP_001188122.1 2892447 R 399739 CDS YP_001188123.1 146307658 5107945 complement(2893822..2894379) 1 NC_009439.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 2894379 5107945 Pmen_2635 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001188123.1 2893822 R 399739 CDS YP_001188124.1 146307659 5107946 complement(2894398..2895687) 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2895687 5107946 Pmen_2636 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001188124.1 2894398 R 399739 CDS YP_001188125.1 146307660 5107947 complement(2895802..2896101) 1 NC_009439.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 2896101 5107947 Pmen_2637 Pseudomonas mendocina ymp antibiotic biosynthesis monooxygenase YP_001188125.1 2895802 R 399739 CDS YP_001188126.1 146307661 5107948 2896595..2897542 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC family transcriptional regulator 2897542 5107948 Pmen_2638 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188126.1 2896595 D 399739 CDS YP_001188127.1 146307662 5107265 complement(2897736..2898884) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2898884 5107265 Pmen_2640 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001188127.1 2897736 R 399739 CDS YP_001188128.1 146307663 5107950 complement(2898961..2899929) 1 NC_009439.1 upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism; transcriptional activator FtrA 2899929 ftrA 5107950 ftrA Pseudomonas mendocina ymp transcriptional activator FtrA YP_001188128.1 2898961 R 399739 CDS YP_001188129.1 146307664 5107951 2900027..2900464 1 NC_009439.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 2900464 5107951 Pmen_2642 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001188129.1 2900027 D 399739 CDS YP_001188130.1 146307665 5107952 2900458..2900979 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2900979 5107952 Pmen_2643 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001188130.1 2900458 D 399739 CDS YP_001188131.1 146307666 5107953 complement(2900960..2901529) 1 NC_009439.1 hypothetical protein 2901529 5107953 Pmen_2644 Pseudomonas mendocina ymp hypothetical protein YP_001188131.1 2900960 R 399739 CDS YP_001188132.1 146307667 5107954 complement(2901560..2902159) 1 NC_009439.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 2902159 recR 5107954 recR Pseudomonas mendocina ymp recombination protein RecR YP_001188132.1 2901560 R 399739 CDS YP_001188133.1 146307668 5107955 complement(2902414..2902740) 1 NC_009439.1 PFAM: conserved hypothetical protein 103; hypothetical protein 2902740 5107955 Pmen_2646 Pseudomonas mendocina ymp hypothetical protein YP_001188133.1 2902414 R 399739 CDS YP_001188134.1 146307669 5107956 complement(2902767..2904845) 1 NC_009439.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 2904845 5107956 Pmen_2647 Pseudomonas mendocina ymp DNA polymerase III subunits gamma and tau YP_001188134.1 2902767 R 399739 CDS YP_001188135.1 146307670 5107957 2905303..2905524 1 NC_009439.1 hypothetical protein 2905524 5107957 Pmen_2648 Pseudomonas mendocina ymp hypothetical protein YP_001188135.1 2905303 D 399739 CDS YP_001188136.1 146307671 5107958 2905578..2905865 1 NC_009439.1 hypothetical protein 2905865 5107958 Pmen_2649 Pseudomonas mendocina ymp hypothetical protein YP_001188136.1 2905578 D 399739 CDS YP_001188137.1 146307672 5107266 complement(2906196..2907902) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2907902 5107266 Pmen_2650 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001188137.1 2906196 R 399739 CDS YP_001188138.1 146307673 5107960 2908163..2908441 1 NC_009439.1 PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 2908441 5107960 Pmen_2651 Pseudomonas mendocina ymp histone family protein DNA-binding protein YP_001188138.1 2908163 D 399739 CDS YP_001188139.1 146307674 5107961 2908593..2909825 1 NC_009439.1 PFAM: Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Sel1 domain-containing protein 2909825 5107961 Pmen_2652 Pseudomonas mendocina ymp Sel1 domain-containing protein YP_001188139.1 2908593 D 399739 CDS YP_001188140.1 146307675 5107962 2909825..2912137 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 2912137 5107962 Pmen_2653 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001188140.1 2909825 D 399739 CDS YP_001188141.1 146307676 5107963 complement(2912150..2912446) 1 NC_009439.1 hypothetical protein 2912446 5107963 Pmen_2654 Pseudomonas mendocina ymp hypothetical protein YP_001188141.1 2912150 R 399739 CDS YP_001188142.1 146307677 5107964 complement(2912466..2912960) 1 NC_009439.1 PFAM: blue (type 1) copper domain protein; blue (type1) copper domain-containing protein 2912960 5107964 Pmen_2655 Pseudomonas mendocina ymp blue (type1) copper domain-containing protein YP_001188142.1 2912466 R 399739 CDS YP_001188143.1 146307678 5107965 complement(2913012..2914424) 1 NC_009439.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; multicopper oxidase, type 3 2914424 5107965 Pmen_2656 Pseudomonas mendocina ymp multicopper oxidase, type 3 YP_001188143.1 2913012 R 399739 CDS YP_001188144.1 146307679 5107966 complement(2914441..2915841) 1 NC_009439.1 PFAM: outer membrane efflux protein; outer membrane efflux protein 2915841 5107966 Pmen_2657 Pseudomonas mendocina ymp outer membrane efflux protein YP_001188144.1 2914441 R 399739 CDS YP_001188145.1 146307680 5107967 complement(2915828..2916127) 1 NC_009439.1 hypothetical protein 2916127 5107967 Pmen_2658 Pseudomonas mendocina ymp hypothetical protein YP_001188145.1 2915828 R 399739 CDS YP_001188146.1 146307681 5107968 complement(2916202..2916606) 1 NC_009439.1 hypothetical protein 2916606 5107968 Pmen_2659 Pseudomonas mendocina ymp hypothetical protein YP_001188146.1 2916202 R 399739 CDS YP_001188147.1 146307682 5107969 complement(2916676..2918103) 1 NC_009439.1 TIGRFAM: arginine/ornithine antiporter; PFAM: Spore germination protein; amino acid permease-associated region; arginine/ornithine antiporter 2918103 5107969 Pmen_2660 Pseudomonas mendocina ymp arginine/ornithine antiporter YP_001188147.1 2916676 R 399739 CDS YP_001188148.1 146307683 5107970 2918267..2919244 1 NC_009439.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 2919244 5107970 Pmen_2661 Pseudomonas mendocina ymp alpha/beta hydrolase domain-containing protein YP_001188148.1 2918267 D 399739 CDS YP_001188149.1 146307684 5107971 2919383..2920069 1 NC_009439.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 2920069 5107971 Pmen_2662 Pseudomonas mendocina ymp isochorismatase hydrolase YP_001188149.1 2919383 D 399739 CDS YP_001188150.1 146307685 5107972 2920074..2920745 1 NC_009439.1 hypothetical protein 2920745 5107972 Pmen_2663 Pseudomonas mendocina ymp hypothetical protein YP_001188150.1 2920074 D 399739 CDS YP_001188151.1 146307686 5107973 2920742..2922724 1 NC_009439.1 PFAM: Amidohydrolase 3; amidohydrolase 3 2922724 5107973 Pmen_2664 Pseudomonas mendocina ymp amidohydrolase 3 YP_001188151.1 2920742 D 399739 CDS YP_001188152.1 146307687 5107974 2922726..2924354 1 NC_009439.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; hypothetical protein 2924354 5107974 Pmen_2665 Pseudomonas mendocina ymp hypothetical protein YP_001188152.1 2922726 D 399739 CDS YP_001188153.1 146307688 5107975 2924385..2925155 1 NC_009439.1 hypothetical protein 2925155 5107975 Pmen_2666 Pseudomonas mendocina ymp hypothetical protein YP_001188153.1 2924385 D 399739 CDS YP_001188154.1 146307689 5107976 2925142..2928195 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; Two component regulator propeller; Two component regulator three Y domain protein; histidine kinase, dimerisation and phosphoacceptor region; histidine kinase 2928195 5107976 Pmen_2667 Pseudomonas mendocina ymp histidine kinase YP_001188154.1 2925142 D 399739 CDS YP_001188155.1 146307690 5107977 2928192..2928833 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 2928833 5107977 Pmen_2668 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001188155.1 2928192 D 399739 CDS YP_001188156.1 146307691 5107820 2928920..2929486 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 2929486 5107820 Pmen_2669 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188156.1 2928920 D 399739 CDS YP_001188157.1 146307692 5107821 complement(2929487..2930089) 1 NC_009439.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 2930089 5107821 Pmen_2670 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001188157.1 2929487 R 399739 CDS YP_001188158.1 146307693 5107822 complement(2930195..2931352) 1 NC_009439.1 PFAM: aminotransferase, class I and II; GntR family transcriptional regulator 2931352 5107822 Pmen_2671 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188158.1 2930195 R 399739 CDS YP_001188159.1 146307694 5107823 2931520..2931957 1 NC_009439.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2931957 5107823 Pmen_2672 Pseudomonas mendocina ymp MarR family transcriptional regulator YP_001188159.1 2931520 D 399739 CDS YP_001188160.1 146307695 5107824 2932147..2932671 1 NC_009439.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in P. aeruginosa this sigma factor regulates the production of the ferrichrome outer membrane receptor FiuA.; RNA polymerase sigma factor 2932671 5107824 Pmen_2673 Pseudomonas mendocina ymp RNA polymerase sigma factor YP_001188160.1 2932147 D 399739 CDS YP_001188161.1 146307696 5107825 2932668..2933624 1 NC_009439.1 PFAM: FecR protein; putative FecR protein 2933624 5107825 Pmen_2674 Pseudomonas mendocina ymp putative FecR protein YP_001188161.1 2932668 D 399739 CDS YP_001188162.1 146307697 5107826 2933703..2936111 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 2936111 5107826 Pmen_2675 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001188162.1 2933703 D 399739 CDS YP_001188163.1 146307698 5107827 complement(2936329..2936976) 1 NC_009439.1 hypothetical protein 2936976 5107827 Pmen_2676 Pseudomonas mendocina ymp hypothetical protein YP_001188163.1 2936329 R 399739 CDS YP_001188164.1 146307699 5107828 2937121..2937732 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2937732 5107828 Pmen_2677 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001188164.1 2937121 D 399739 CDS YP_001188165.1 146307700 5107829 2937732..2938922 1 NC_009439.1 TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; benzoate transporter 2938922 5107829 Pmen_2678 Pseudomonas mendocina ymp benzoate transporter YP_001188165.1 2937732 D 399739 CDS YP_001188166.1 146307701 5107830 complement(2939018..2939911) 1 NC_009439.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 2939911 5107830 Pmen_2679 Pseudomonas mendocina ymp bile acid:sodium symporter YP_001188166.1 2939018 R 399739 CDS YP_001188167.1 146307702 5107831 complement(2940021..2940782) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2940782 5107831 Pmen_2680 Pseudomonas mendocina ymp short chain dehydrogenase YP_001188167.1 2940021 R 399739 CDS YP_001188168.1 146307703 5107832 complement(2940998..2941735) 1 NC_009439.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 2941735 5107832 Pmen_2681 Pseudomonas mendocina ymp orotidine 5'-phosphate decarboxylase YP_001188168.1 2940998 R 399739 CDS YP_001188169.1 146307704 5107833 2941924..2943318 1 NC_009439.1 PFAM: Ethanolamine ammonia lyase large subunit; ethanolamine ammonia lyase large subunit 2943318 5107833 Pmen_2682 Pseudomonas mendocina ymp ethanolamine ammonia lyase large subunit YP_001188169.1 2941924 D 399739 CDS YP_001188170.1 146307705 5107834 2943318..2944082 1 NC_009439.1 PFAM: Ethanolamine ammonia-lyase light chain; ethanolamine ammonia-lyase light chain 2944082 5107834 Pmen_2683 Pseudomonas mendocina ymp ethanolamine ammonia-lyase light chain YP_001188170.1 2943318 D 399739 CDS YP_001188171.1 146307706 5107835 2944137..2944310 1 NC_009439.1 hypothetical protein 2944310 5107835 Pmen_2684 Pseudomonas mendocina ymp hypothetical protein YP_001188171.1 2944137 D 399739 CDS YP_001188172.1 146307707 5107836 2944392..2945150 1 NC_009439.1 PFAM: Abortive infection protein; abortive infection protein 2945150 5107836 Pmen_2685 Pseudomonas mendocina ymp abortive infection protein YP_001188172.1 2944392 D 399739 CDS YP_001188173.1 146307708 5107837 complement(2945101..2945892) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2945892 5107837 Pmen_2686 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001188173.1 2945101 R 399739 CDS YP_001188174.1 146307709 5107838 complement(2945994..2946779) 1 NC_009439.1 hypothetical protein 2946779 5107838 Pmen_2687 Pseudomonas mendocina ymp hypothetical protein YP_001188174.1 2945994 R 399739 CDS YP_001188175.1 146307710 5107839 complement(2946879..2947502) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2947502 5107839 Pmen_2688 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188175.1 2946879 R 399739 CDS YP_001188176.1 146307711 5107840 2947703..2949541 1 NC_009439.1 PFAM: protein of unknown function DUF1446; hypothetical protein 2949541 5107840 Pmen_2689 Pseudomonas mendocina ymp hypothetical protein YP_001188176.1 2947703 D 399739 CDS YP_001188177.1 146307712 5107841 2949584..2950453 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2950453 5107841 Pmen_2690 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188177.1 2949584 D 399739 CDS YP_001188178.1 146307713 5107842 2950458..2952074 1 NC_009439.1 PFAM: carboxyl transferase; propionyl-CoA carboxylase 2952074 5107842 Pmen_2691 Pseudomonas mendocina ymp propionyl-CoA carboxylase YP_001188178.1 2950458 D 399739 CDS YP_001188179.1 146307714 5107843 2952124..2953284 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2953284 5107843 Pmen_2692 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001188179.1 2952124 D 399739 CDS YP_001188180.1 146307715 5107844 2953358..2954155 1 NC_009439.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 2954155 5107844 Pmen_2693 Pseudomonas mendocina ymp enoyl-CoA hydratase/isomerase YP_001188180.1 2953358 D 399739 CDS YP_001188181.1 146307716 5107845 2954349..2956334 1 NC_009439.1 PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; carbamoyl-phosphate synthase subunit L 2956334 5107845 Pmen_2694 Pseudomonas mendocina ymp carbamoyl-phosphate synthase subunit L YP_001188181.1 2954349 D 399739 CDS YP_001188182.1 146307717 5107846 2956414..2957238 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2957238 5107846 Pmen_2695 Pseudomonas mendocina ymp short chain dehydrogenase YP_001188182.1 2956414 D 399739 CDS YP_001188183.1 146307718 5107847 2957525..2959351 1 NC_009439.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 2959351 5107847 Pmen_2696 Pseudomonas mendocina ymp long-chain-acyl-CoA synthetase YP_001188183.1 2957525 D 399739 CDS YP_001188184.1 146307719 5107848 complement(2959353..2959868) 1 NC_009439.1 hypothetical protein 2959868 5107848 Pmen_2697 Pseudomonas mendocina ymp hypothetical protein YP_001188184.1 2959353 R 399739 CDS YP_001188185.1 146307720 5107849 complement(2959949..2960638) 1 NC_009439.1 hypothetical protein 2960638 5107849 Pmen_2698 Pseudomonas mendocina ymp hypothetical protein YP_001188185.1 2959949 R 399739 CDS YP_001188186.1 146307721 5107850 complement(2960635..2961207) 1 NC_009439.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2961207 5107850 Pmen_2699 Pseudomonas mendocina ymp RNA polymerase sigma factor YP_001188186.1 2960635 R 399739 CDS YP_001188187.1 146307722 5107851 complement(2961204..2962904) 1 NC_009439.1 PFAM: von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 2962904 5107851 Pmen_2700 Pseudomonas mendocina ymp von Willebrand factor type A domain-containing protein YP_001188187.1 2961204 R 399739 CDS YP_001188188.1 146307723 5107852 complement(2962991..2964499) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 2964499 5107852 Pmen_2701 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188188.1 2962991 R 399739 CDS YP_001188189.1 146307724 5107853 complement(2964621..2965433) 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 2965433 5107853 Pmen_2702 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001188189.1 2964621 R 399739 CDS YP_001188190.1 146307725 5107854 complement(2965433..2965783) 1 NC_009439.1 hypothetical protein 2965783 5107854 Pmen_2703 Pseudomonas mendocina ymp hypothetical protein YP_001188190.1 2965433 R 399739 CDS YP_001188191.1 146307726 5107855 complement(2965793..2966626) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 2966626 5107855 Pmen_2704 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001188191.1 2965793 R 399739 CDS YP_001188192.1 146307727 5107856 2966742..2967671 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2967671 5107856 Pmen_2705 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001188192.1 2966742 D 399739 CDS YP_001188193.1 146307728 5107857 complement(2967765..2968694) 1 NC_009439.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 2968694 5107857 Pmen_2706 Pseudomonas mendocina ymp electron transfer flavoprotein subunit alpha YP_001188193.1 2967765 R 399739 CDS YP_001188194.1 146307729 5107858 complement(2968695..2969444) 1 NC_009439.1 PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta 2969444 5107858 Pmen_2707 Pseudomonas mendocina ymp electron transfer flavoprotein subunit beta YP_001188194.1 2968695 R 399739 CDS YP_001188195.1 146307730 5107859 2969769..2971433 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase 2971433 5107859 Pmen_2708 Pseudomonas mendocina ymp electron-transferring-flavoprotein dehydrogenase YP_001188195.1 2969769 D 399739 CDS YP_001188196.1 146307731 5107860 complement(2971561..2972337) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; oxidoreductase 2972337 5107860 Pmen_2709 Pseudomonas mendocina ymp oxidoreductase YP_001188196.1 2971561 R 399739 CDS YP_001188197.1 146307732 5107861 complement(2972340..2973551) 1 NC_009439.1 catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 2973551 5107861 Pmen_2710 Pseudomonas mendocina ymp O-succinylhomoserine sulfhydrylase YP_001188197.1 2972340 R 399739 CDS YP_001188198.1 146307733 5107862 complement(2973691..2975199) 1 NC_009439.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 2975199 5107862 Pmen_2711 Pseudomonas mendocina ymp amidophosphoribosyltransferase YP_001188198.1 2973691 R 399739 CDS YP_001188199.1 146307734 5107863 complement(2975289..2975801) 1 NC_009439.1 PFAM: Colicin V production protein; colicin V production protein 2975801 5107863 Pmen_2712 Pseudomonas mendocina ymp colicin V production protein YP_001188199.1 2975289 R 399739 CDS YP_001188200.1 146307735 5107864 complement(2976159..2976773) 1 NC_009439.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 2976773 5107864 Pmen_2713 Pseudomonas mendocina ymp sporulation domain-containing protein YP_001188200.1 2976159 R 399739 CDS YP_001188201.1 146307736 5107865 complement(2976789..2978066) 1 NC_009439.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2978066 5107865 Pmen_2714 Pseudomonas mendocina ymp bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001188201.1 2976789 R 399739 CDS YP_001188202.1 146307737 5107866 complement(2978063..2978947) 1 NC_009439.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2978947 5107866 Pmen_2715 Pseudomonas mendocina ymp acetyl-CoA carboxylase subunit beta YP_001188202.1 2978063 R 399739 CDS YP_001188203.1 146307738 5107867 complement(2979064..2979717) 1 NC_009439.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 2979717 5107867 Pmen_2716 Pseudomonas mendocina ymp N-(5'-phosphoribosyl)anthranilate isomerase YP_001188203.1 2979064 R 399739 CDS YP_001188204.1 146307739 5107868 complement(2979742..2980605) 1 NC_009439.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 2980605 truA 5107868 truA Pseudomonas mendocina ymp tRNA pseudouridine synthase A YP_001188204.1 2979742 R 399739 CDS YP_001188205.1 146307740 5107869 complement(2980614..2983409) 1 NC_009439.1 Tfp pilus assembly protein FimV-like protein 2983409 5107869 Pmen_2718 Pseudomonas mendocina ymp Tfp pilus assembly protein FimV-like protein YP_001188205.1 2980614 R 399739 CDS YP_001188206.1 146307741 5107870 complement(2983565..2984575) 1 NC_009439.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2984575 5107870 Pmen_2719 Pseudomonas mendocina ymp aspartate-semialdehyde dehydrogenase YP_001188206.1 2983565 R 399739 CDS YP_001188207.1 146307742 5107871 complement(2984716..2985828) 1 NC_009439.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 2985828 5107871 Pmen_2720 Pseudomonas mendocina ymp aspartate-semialdehyde dehydrogenase YP_001188207.1 2984716 R 399739 CDS YP_001188208.1 146307743 5107872 complement(2985886..2986968) 1 NC_009439.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2986968 5107872 Pmen_2721 Pseudomonas mendocina ymp 3-isopropylmalate dehydrogenase YP_001188208.1 2985886 R 399739 CDS YP_001188209.1 146307744 5107873 complement(2987056..2987703) 1 NC_009439.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2987703 leuD 5107873 leuD Pseudomonas mendocina ymp isopropylmalate isomerase small subunit YP_001188209.1 2987056 R 399739 CDS YP_001188210.1 146307745 5107874 complement(2987715..2989142) 1 NC_009439.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2989142 5107874 Pmen_2723 Pseudomonas mendocina ymp isopropylmalate isomerase large subunit YP_001188210.1 2987715 R 399739 CDS YP_001188211.1 146307746 5107875 2989421..2990302 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2990302 5107875 Pmen_2724 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188211.1 2989421 D 399739 CDS YP_001188212.1 146307747 5107876 2990402..2992555 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2992555 5107876 Pmen_2725 Pseudomonas mendocina ymp PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001188212.1 2990402 D 399739 CDS YP_001188213.1 146307748 5107877 complement(2992647..2993129) 1 NC_009439.1 PFAM: heat shock protein Hsp20; heat shock protein Hsp20 2993129 5107877 Pmen_2726 Pseudomonas mendocina ymp heat shock protein Hsp20 YP_001188213.1 2992647 R 399739 CDS YP_001188214.1 146307749 5107878 complement(2993310..2994266) 1 NC_009439.1 PFAM: dihydrouridine synthase, DuS; dihydrouridine synthase, DuS 2994266 5107878 Pmen_2727 Pseudomonas mendocina ymp dihydrouridine synthase, DuS YP_001188214.1 2993310 R 399739 CDS YP_001188215.1 146307750 5107879 2994361..2994756 1 NC_009439.1 hypothetical protein 2994756 5107879 Pmen_2728 Pseudomonas mendocina ymp hypothetical protein YP_001188215.1 2994361 D 399739 CDS YP_001188216.1 146307751 5107880 complement(2994763..2995212) 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 2995212 5107880 Pmen_2729 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001188216.1 2994763 R 399739 CDS YP_001188217.1 146307752 5107881 2995358..2997274 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; diguanylate cyclase 2997274 5107881 Pmen_2730 Pseudomonas mendocina ymp diguanylate cyclase YP_001188217.1 2995358 D 399739 CDS YP_001188218.1 146307753 5107882 complement(2997244..2998083) 1 NC_009439.1 hypothetical protein 2998083 5107882 Pmen_2731 Pseudomonas mendocina ymp hypothetical protein YP_001188218.1 2997244 R 399739 CDS YP_001188219.1 146307754 5107883 complement(2998105..2998644) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 2998644 5107883 Pmen_2732 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188219.1 2998105 R 399739 CDS YP_001188220.1 146307755 5107272 complement(2999714..3001195) 1 NC_009439.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 3001195 gltX 5107272 gltX Pseudomonas mendocina ymp glutamyl-tRNA synthetase YP_001188220.1 2999714 R 399739 CDS YP_001188221.1 146307756 5107885 complement(3001230..3002150) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3002150 5107885 Pmen_2734 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188221.1 3001230 R 399739 CDS YP_001188222.1 146307757 5107886 3002259..3003308 1 NC_009439.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 3003308 5107886 Pmen_2735 Pseudomonas mendocina ymp secretion protein HlyD family protein YP_001188222.1 3002259 D 399739 CDS YP_001188223.1 146307758 5107887 3003298..3004851 1 NC_009439.1 TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 3004851 5107887 Pmen_2736 Pseudomonas mendocina ymp EmrB/QacA family drug resistance transporter YP_001188223.1 3003298 D 399739 CDS YP_001188224.1 146307759 5107888 complement(3004948..3006963) 1 NC_009439.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 3006963 5107888 Pmen_2737 Pseudomonas mendocina ymp excinuclease ABC subunit B YP_001188224.1 3004948 R 399739 CDS YP_001188225.1 146307760 5107889 3007212..3008408 1 NC_009439.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 3008408 5107889 Pmen_2738 Pseudomonas mendocina ymp aromatic amino acid aminotransferase YP_001188225.1 3007212 D 399739 CDS YP_001188226.1 146307761 5107890 complement(3008559..3009479) 1 NC_009439.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 3009479 5107890 Pmen_2739 Pseudomonas mendocina ymp N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_001188226.1 3008559 R 399739 CDS YP_001188227.1 146307762 5107891 3009654..3010946 1 NC_009439.1 PFAM: Citrate transporter; citrate transporter 3010946 5107891 Pmen_2740 Pseudomonas mendocina ymp citrate transporter YP_001188227.1 3009654 D 399739 CDS YP_001188228.1 146307763 5107892 3011285..3011881 1 NC_009439.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 3011881 5107892 Pmen_2741 Pseudomonas mendocina ymp isochorismatase hydrolase YP_001188228.1 3011285 D 399739 CDS YP_001188229.1 146307764 5107893 3011962..3012282 1 NC_009439.1 hypothetical protein 3012282 5107893 Pmen_2742 Pseudomonas mendocina ymp hypothetical protein YP_001188229.1 3011962 D 399739 CDS YP_001188230.1 146307765 5107894 3012392..3012949 1 NC_009439.1 PFAM: Smr protein/MutS2; Smr protein/MutS2 3012949 5107894 Pmen_2743 Pseudomonas mendocina ymp Smr protein/MutS2 YP_001188230.1 3012392 D 399739 CDS YP_001188231.1 146307766 5107895 3013035..3013580 1 NC_009439.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 3013580 folE 5107895 folE Pseudomonas mendocina ymp GTP cyclohydrolase I YP_001188231.1 3013035 D 399739 CDS YP_001188232.1 146307767 5107896 3013645..3014013 1 NC_009439.1 PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; glutaredoxin 3014013 5107896 Pmen_2745 Pseudomonas mendocina ymp glutaredoxin YP_001188232.1 3013645 D 399739 CDS YP_001188233.1 146307768 5107897 complement(3014153..3016513) 1 NC_009439.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 3016513 ligA 5107897 ligA Pseudomonas mendocina ymp NAD-dependent DNA ligase LigA YP_001188233.1 3014153 R 399739 CDS YP_001188234.1 146307769 5107898 complement(3016574..3017395) 1 NC_009439.1 interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA 3017395 zipA 5107898 zipA Pseudomonas mendocina ymp cell division protein ZipA YP_001188234.1 3016574 R 399739 CDS YP_001188235.1 146307770 5107544 complement(3017566..3021054) 1 NC_009439.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; condensin subunit Smc 3021054 5107544 Pmen_2748 Pseudomonas mendocina ymp condensin subunit Smc YP_001188235.1 3017566 R 399739 CDS YP_001188236.1 146307771 5107545 complement(3021061..3021720) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR family transcriptional regulator 3021720 5107545 Pmen_2749 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188236.1 3021061 R 399739 CDS YP_001188237.1 146307772 5107546 3021953..3023086 1 NC_009439.1 PFAM: fatty acid desaturase; alkane 1-monooxygenase 3023086 5107546 Pmen_2750 Pseudomonas mendocina ymp alkane 1-monooxygenase YP_001188237.1 3021953 D 399739 CDS YP_001188238.1 146307773 5107547 3023473..3024912 1 NC_009439.1 PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; FAD-binding molybdopterin dehydrogenase 3024912 5107547 Pmen_2751 Pseudomonas mendocina ymp FAD-binding molybdopterin dehydrogenase YP_001188238.1 3023473 D 399739 CDS YP_001188239.1 146307774 5107548 3024940..3027336 1 NC_009439.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine oxidase 3027336 5107548 Pmen_2752 Pseudomonas mendocina ymp xanthine oxidase YP_001188239.1 3024940 D 399739 CDS YP_001188240.1 146307775 5107549 3027618..3028448 1 NC_009439.1 PFAM: protein of unknown function DUF182; molybdenum cofactor sulfurylase 3028448 5107549 Pmen_2753 Pseudomonas mendocina ymp molybdenum cofactor sulfurylase YP_001188240.1 3027618 D 399739 CDS YP_001188241.1 146307776 5107550 3028619..3029920 1 NC_009439.1 Catalyzes the deamination of guanine; guanine deaminase 3029920 5107550 Pmen_2754 Pseudomonas mendocina ymp guanine deaminase YP_001188241.1 3028619 D 399739 CDS YP_001188242.1 146307777 5107551 complement(3030057..3030824) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3030824 5107551 Pmen_2755 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188242.1 3030057 R 399739 CDS YP_001188243.1 146307778 5107552 3031407..3032747 1 NC_009439.1 PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; xanthine/uracil/vitamin C permease 3032747 5107552 Pmen_2756 Pseudomonas mendocina ymp xanthine/uracil/vitamin C permease YP_001188243.1 3031407 D 399739 CDS YP_001188244.1 146307779 5107553 complement(3033051..3033404) 1 NC_009439.1 PFAM: Transthyretin; transthyretin 3033404 5107553 Pmen_2757 Pseudomonas mendocina ymp transthyretin YP_001188244.1 3033051 R 399739 CDS YP_001188245.1 146307780 5107554 3033807..3034733 1 NC_009439.1 PFAM: polysaccharide deacetylase; chitin deacetylase 3034733 5107554 Pmen_2758 Pseudomonas mendocina ymp chitin deacetylase YP_001188245.1 3033807 D 399739 CDS YP_001188246.1 146307781 5107555 3034730..3035260 1 NC_009439.1 hypothetical protein 3035260 5107555 Pmen_2759 Pseudomonas mendocina ymp hypothetical protein YP_001188246.1 3034730 D 399739 CDS YP_001188247.1 146307782 5107556 3035306..3035809 1 NC_009439.1 catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase 3035809 5107556 Pmen_2760 Pseudomonas mendocina ymp ureidoglycolate hydrolase YP_001188247.1 3035306 D 399739 CDS YP_001188248.1 146307783 5107557 3035857..3037149 1 NC_009439.1 PFAM: protein of unknown function DUF989; hypothetical protein 3037149 5107557 Pmen_2761 Pseudomonas mendocina ymp hypothetical protein YP_001188248.1 3035857 D 399739 CDS YP_001188249.1 146307784 5107558 3037449..3038951 1 NC_009439.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 3038951 5107558 Pmen_2762 Pseudomonas mendocina ymp uracil-xanthine permease YP_001188249.1 3037449 D 399739 CDS YP_001188250.1 146307785 5107559 3039029..3039889 1 NC_009439.1 nucleoside-binding outer membrane protein-like protein 3039889 5107559 Pmen_2763 Pseudomonas mendocina ymp nucleoside-binding outer membrane protein-like protein YP_001188250.1 3039029 D 399739 CDS YP_001188251.1 146307786 5107560 3040321..3041874 1 NC_009439.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 3041874 5107560 Pmen_2764 Pseudomonas mendocina ymp cytosine/purines uracil thiamine allantoin permease YP_001188251.1 3040321 D 399739 CDS YP_001188252.1 146307787 5107561 complement(3042052..3042891) 1 NC_009439.1 hypothetical protein 3042891 5107561 Pmen_2765 Pseudomonas mendocina ymp hypothetical protein YP_001188252.1 3042052 R 399739 CDS YP_001188253.1 146307788 5107562 complement(3042936..3043931) 1 NC_009439.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 3043931 5107562 Pmen_2766 Pseudomonas mendocina ymp molybdenum cofactor biosynthesis protein A YP_001188253.1 3042936 R 399739 CDS YP_001188254.1 146307789 5107563 3044144..3044788 1 NC_009439.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator 3044788 5107563 Pmen_2767 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188254.1 3044144 D 399739 CDS YP_001188255.1 146307790 5107564 complement(3045339..3045773) 1 NC_009439.1 PFAM: protein of unknown function DUF336; hypothetical protein 3045773 5107564 Pmen_2768 Pseudomonas mendocina ymp hypothetical protein YP_001188255.1 3045339 R 399739 CDS YP_001188256.1 146307791 5107565 3046105..3047880 1 NC_009439.1 catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 3047880 5107565 Pmen_2769 Pseudomonas mendocina ymp glyoxylate carboligase YP_001188256.1 3046105 D 399739 CDS YP_001188257.1 146307792 5107566 3047983..3048780 1 NC_009439.1 PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 3048780 5107566 Pmen_2770 Pseudomonas mendocina ymp hydroxypyruvate isomerase YP_001188257.1 3047983 D 399739 CDS YP_001188258.1 146307793 5107567 3048794..3049684 1 NC_009439.1 TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 3049684 5107567 Pmen_2771 Pseudomonas mendocina ymp 2-hydroxy-3-oxopropionate reductase YP_001188258.1 3048794 D 399739 CDS YP_001188259.1 146307794 5107568 3049983..3051257 1 NC_009439.1 PFAM: MOFRL domain protein; glycerate 2-kinase 3051257 5107568 Pmen_2772 Pseudomonas mendocina ymp glycerate 2-kinase YP_001188259.1 3049983 D 399739 CDS YP_001188260.1 146307795 5107569 3051254..3052669 1 NC_009439.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 3052669 5107569 Pmen_2773 Pseudomonas mendocina ymp pyruvate kinase YP_001188260.1 3051254 D 399739 CDS YP_001188261.1 146307796 5107570 3052914..3053825 1 NC_009439.1 PFAM: Urea transporter; Urea transporter 3053825 5107570 Pmen_2774 Pseudomonas mendocina ymp Urea transporter YP_001188261.1 3052914 D 399739 CDS YP_001188262.1 146307797 5107571 3053983..3055008 1 NC_009439.1 DNA topoisomerase 3055008 5107571 Pmen_2775 Pseudomonas mendocina ymp DNA topoisomerase YP_001188262.1 3053983 D 399739 CDS YP_001188263.1 146307798 5107572 complement(3055272..3056735) 1 NC_009439.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 3056735 5107572 Pmen_2776 Pseudomonas mendocina ymp RND efflux system outer membrane lipoprotein YP_001188263.1 3055272 R 399739 CDS YP_001188264.1 146307799 5107573 complement(3056732..3059776) 1 NC_009439.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 3059776 5107573 Pmen_2777 Pseudomonas mendocina ymp acriflavin resistance protein YP_001188264.1 3056732 R 399739 CDS YP_001188265.1 146307800 5107574 complement(3059781..3060860) 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 3060860 5107574 Pmen_2778 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001188265.1 3059781 R 399739 CDS YP_001188266.1 146307801 5107575 3061289..3061672 1 NC_009439.1 hypothetical protein 3061672 5107575 Pmen_2779 Pseudomonas mendocina ymp hypothetical protein YP_001188266.1 3061289 D 399739 CDS YP_001188267.1 146307802 5107576 3061756..3062610 1 NC_009439.1 PFAM: Ion transport protein; Ion transport 2 domain protein; Ion transport protein 3062610 5107576 Pmen_2780 Pseudomonas mendocina ymp Ion transport protein YP_001188267.1 3061756 D 399739 CDS YP_001188268.1 146307803 5107577 3062693..3064150 1 NC_009439.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; anion transporter 3064150 5107577 Pmen_2781 Pseudomonas mendocina ymp anion transporter YP_001188268.1 3062693 D 399739 CDS YP_001188269.1 146307804 5107578 complement(3064224..3064589) 1 NC_009439.1 hypothetical protein 3064589 5107578 Pmen_2782 Pseudomonas mendocina ymp hypothetical protein YP_001188269.1 3064224 R 399739 CDS YP_001188270.1 146307805 5107579 complement(3064586..3065797) 1 NC_009439.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 3065797 5107579 Pmen_2783 Pseudomonas mendocina ymp hypothetical protein YP_001188270.1 3064586 R 399739 CDS YP_001188271.1 146307806 5107580 complement(3065794..3066282) 1 NC_009439.1 PFAM: cytochrome C biogenesis protein; cytochrome C biogenesis protein 3066282 5107580 Pmen_2784 Pseudomonas mendocina ymp cytochrome C biogenesis protein YP_001188271.1 3065794 R 399739 CDS YP_001188272.1 146307807 5107581 complement(3066279..3066818) 1 NC_009439.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; periplasmic protein thiol--disulfide oxidoreductase DsbE 3066818 5107581 Pmen_2785 Pseudomonas mendocina ymp periplasmic protein thiol--disulfide oxidoreductase DsbE YP_001188272.1 3066279 R 399739 CDS YP_001188273.1 146307808 5107582 complement(3066815..3068788) 1 NC_009439.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; cytochrome c-type biogenesis protein CcmF 3068788 5107582 Pmen_2786 Pseudomonas mendocina ymp cytochrome c-type biogenesis protein CcmF YP_001188273.1 3066815 R 399739 CDS YP_001188274.1 146307809 5107583 complement(3068785..3069270) 1 NC_009439.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3069270 5107583 Pmen_2787 Pseudomonas mendocina ymp cytochrome c-type biogenesis protein CcmE YP_001188274.1 3068785 R 399739 CDS YP_001188275.1 146307810 5107584 complement(3069267..3069443) 1 NC_009439.1 PFAM: Heme exporter protein D (CcmD); Heme exporter protein CcmD 3069443 5107584 Pmen_2788 Pseudomonas mendocina ymp Heme exporter protein CcmD YP_001188275.1 3069267 R 399739 CDS YP_001188276.1 146307811 5107585 complement(3069440..3070195) 1 NC_009439.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; heme exporter protein CcmC 3070195 5107585 Pmen_2789 Pseudomonas mendocina ymp heme exporter protein CcmC YP_001188276.1 3069440 R 399739 CDS YP_001188277.1 146307812 5107586 complement(3070283..3070954) 1 NC_009439.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB 3070954 5107586 Pmen_2790 Pseudomonas mendocina ymp heme exporter protein CcmB YP_001188277.1 3070283 R 399739 CDS YP_001188278.1 146307813 5107587 complement(3070951..3071595) 1 NC_009439.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 3071595 5107587 Pmen_2791 Pseudomonas mendocina ymp cytochrome c biogenesis protein CcmA YP_001188278.1 3070951 R 399739 CDS YP_001188279.1 146307814 5107588 3071793..3073322 1 NC_009439.1 hypothetical protein 3073322 5107588 Pmen_2792 Pseudomonas mendocina ymp hypothetical protein YP_001188279.1 3071793 D 399739 CDS YP_001188280.1 146307815 5107589 3073319..3073663 1 NC_009439.1 flagellar protein FhlB-like protein 3073663 5107589 Pmen_2793 Pseudomonas mendocina ymp flagellar protein FhlB-like protein YP_001188280.1 3073319 D 399739 CDS YP_001188281.1 146307816 5107590 complement(3073644..3074087) 1 NC_009439.1 SMART: Rhodanese domain protein; rhodanese domain-containing protein 3074087 5107590 Pmen_2794 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001188281.1 3073644 R 399739 CDS YP_001188282.1 146307817 5107591 complement(3074246..3074653) 1 NC_009439.1 hypothetical protein 3074653 5107591 Pmen_2795 Pseudomonas mendocina ymp hypothetical protein YP_001188282.1 3074246 R 399739 CDS YP_001188283.1 146307818 5107592 complement(3074653..3075132) 1 NC_009439.1 PFAM: CheW domain protein; putative CheW protein 3075132 5107592 Pmen_2796 Pseudomonas mendocina ymp putative CheW protein YP_001188283.1 3074653 R 399739 CDS YP_001188284.1 146307819 5107593 complement(3075228..3076025) 1 NC_009439.1 PFAM: CheW domain protein; putative CheW protein 3076025 5107593 Pmen_2797 Pseudomonas mendocina ymp putative CheW protein YP_001188284.1 3075228 R 399739 CDS YP_001188285.1 146307820 5107594 complement(3076113..3076901) 1 NC_009439.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3076901 5107594 Pmen_2798 Pseudomonas mendocina ymp cobyrinic acid a,c-diamide synthase YP_001188285.1 3076113 R 399739 CDS YP_001188286.1 146307821 5107595 complement(3076984..3077793) 1 NC_009439.1 Homologous to MotB. These organism have both MotB and MotD. With MotC (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. Either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; flagellar motor protein MotD 3077793 5107595 Pmen_2799 Pseudomonas mendocina ymp flagellar motor protein MotD YP_001188286.1 3076984 R 399739 CDS YP_001188287.1 146307822 5107596 complement(3077806..3078546) 1 NC_009439.1 homologous to MotA; this protein with a related protein (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; either MotAB or MotCD is sufficient for swimming, but both are necessary for swarming motility; these organisms have both MotA and MotC; flagellar motor protein 3078546 motC 5107596 motC Pseudomonas mendocina ymp flagellar motor protein YP_001188287.1 3077806 R 399739 CDS YP_001188288.1 146307823 5107597 complement(3078572..3079699) 1 NC_009439.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 3079699 5107597 Pmen_2801 Pseudomonas mendocina ymp chemotaxis-specific methylesterase YP_001188288.1 3078572 R 399739 CDS YP_001188289.1 146307824 5107598 complement(3079742..3081955) 1 NC_009439.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; CheA signal transduction histidine kinase 3081955 5107598 Pmen_2802 Pseudomonas mendocina ymp CheA signal transduction histidine kinase YP_001188289.1 3079742 R 399739 CDS YP_001188290.1 146307825 5107599 complement(3081968..3082756) 1 NC_009439.1 PFAM: Chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 3082756 5107599 Pmen_2803 Pseudomonas mendocina ymp chemotaxis phosphatase, CheZ YP_001188290.1 3081968 R 399739 CDS YP_001188291.1 146307826 5107600 complement(3082776..3083195) 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 3083195 5107600 Pmen_2804 Pseudomonas mendocina ymp response regulator receiver protein YP_001188291.1 3082776 R 399739 CDS YP_001188292.1 146307827 5107601 complement(3083228..3083974) 1 NC_009439.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 3083974 fliA 5107601 fliA Pseudomonas mendocina ymp flagellar biosynthesis sigma factor YP_001188292.1 3083228 R 399739 CDS YP_001188293.1 146307828 5107602 complement(3083971..3084801) 1 NC_009439.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3084801 5107602 Pmen_2806 Pseudomonas mendocina ymp cobyrinic acid a,c-diamide synthase YP_001188293.1 3083971 R 399739 CDS YP_001188294.1 146307829 5107603 complement(3084892..3086205) 1 NC_009439.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 3086205 flhF 5107603 flhF Pseudomonas mendocina ymp flagellar biosynthesis regulator FlhF YP_001188294.1 3084892 R 399739 CDS YP_001188295.1 146307830 5107604 complement(3086217..3088364) 1 NC_009439.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 3088364 flhA 5107604 flhA Pseudomonas mendocina ymp flagellar biosynthesis protein FlhA YP_001188295.1 3086217 R 399739 CDS YP_001188296.1 146307831 5107605 complement(3088449..3089585) 1 NC_009439.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 3089585 flhB 5107605 flhB Pseudomonas mendocina ymp flagellar biosynthesis protein FlhB YP_001188296.1 3088449 R 399739 CDS YP_001188297.1 146307832 5107606 complement(3089595..3090371) 1 NC_009439.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 3090371 fliR 5107606 fliR Pseudomonas mendocina ymp flagellar biosynthesis protein FliR YP_001188297.1 3089595 R 399739 CDS YP_001188298.1 146307833 5107607 complement(3090385..3090654) 1 NC_009439.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 3090654 fliQ 5107607 fliQ Pseudomonas mendocina ymp flagellar biosynthesis protein FliQ YP_001188298.1 3090385 R 399739 CDS YP_001188299.1 146307834 5107608 complement(3090666..3091451) 1 NC_009439.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 3091451 fliP 5107608 fliP Pseudomonas mendocina ymp flagellar biosynthesis protein FliP YP_001188299.1 3090666 R 399739 CDS YP_001188300.1 146307835 5107609 complement(3091451..3091882) 1 NC_009439.1 PFAM: flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO 3091882 5107609 Pmen_2813 Pseudomonas mendocina ymp flagellar biosynthesis protein, FliO YP_001188300.1 3091451 R 399739 CDS YP_001188301.1 146307836 5107610 complement(3091885..3092352) 1 NC_009439.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 3092352 fliN 5107610 fliN Pseudomonas mendocina ymp flagellar motor switch protein YP_001188301.1 3091885 R 399739 CDS YP_001188302.1 146307837 5107611 complement(3092392..3093363) 1 NC_009439.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 3093363 fliM 5107611 fliM Pseudomonas mendocina ymp flagellar motor switch protein FliM YP_001188302.1 3092392 R 399739 CDS YP_001188303.1 146307838 5107612 complement(3093377..3093898) 1 NC_009439.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 3093898 fliL 5107612 fliL Pseudomonas mendocina ymp flagellar basal body-associated protein FliL YP_001188303.1 3093377 R 399739 CDS YP_001188304.1 146307839 5107613 complement(3094129..3095355) 1 NC_009439.1 PFAM: flagellar hook-length control protein; flagellar hook-length control protein 3095355 5107613 Pmen_2817 Pseudomonas mendocina ymp flagellar hook-length control protein YP_001188304.1 3094129 R 399739 CDS YP_001188305.1 146307840 5107614 complement(3095420..3095803) 1 NC_009439.1 PFAM: Hpt domain protein; Hpt protein 3095803 5107614 Pmen_2818 Pseudomonas mendocina ymp Hpt protein YP_001188305.1 3095420 R 399739 CDS YP_001188306.1 146307841 5107615 complement(3095803..3097491) 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; response regulator receiver protein 3097491 5107615 Pmen_2819 Pseudomonas mendocina ymp response regulator receiver protein YP_001188306.1 3095803 R 399739 CDS YP_001188307.1 146307842 5107616 complement(3097494..3097799) 1 NC_009439.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist 3097799 5107616 Pmen_2820 Pseudomonas mendocina ymp anti-sigma-factor antagonist YP_001188307.1 3097494 R 399739 CDS YP_001188308.1 146307843 5107617 complement(3097883..3098332) 1 NC_009439.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 3098332 fliJ 5107617 fliJ Pseudomonas mendocina ymp flagellar biosynthesis chaperone YP_001188308.1 3097883 R 399739 CDS YP_001188309.1 146307844 5107618 complement(3098358..3099704) 1 NC_009439.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 3099704 fliI 5107618 fliI Pseudomonas mendocina ymp flagellum-specific ATP synthase YP_001188309.1 3098358 R 399739 CDS YP_001188310.1 146307845 5107619 complement(3099694..3100494) 1 NC_009439.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 3100494 fliH 5107619 fliH Pseudomonas mendocina ymp flagellar assembly protein H YP_001188310.1 3099694 R 399739 CDS YP_001188311.1 146307846 5107620 complement(3100763..3101779) 1 NC_009439.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 3101779 fliG 5107620 fliG Pseudomonas mendocina ymp flagellar motor switch protein G YP_001188311.1 3100763 R 399739 CDS YP_001188312.1 146307847 5107621 complement(3101772..3103556) 1 NC_009439.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 3103556 fliF 5107621 fliF Pseudomonas mendocina ymp flagellar MS-ring protein YP_001188312.1 3101772 R 399739 CDS YP_001188313.1 146307848 5107622 complement(3103567..3103896) 1 NC_009439.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 3103896 fliE 5107622 fliE Pseudomonas mendocina ymp flagellar hook-basal body protein FliE YP_001188313.1 3103567 R 399739 CDS YP_001188314.1 146307849 5107742 complement(3104096..3105508) 1 NC_009439.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma-54 specific Fis family transcriptional regulator 3105508 5107742 Pmen_2827 Pseudomonas mendocina ymp two component sigma-54 specific Fis family transcriptional regulator YP_001188314.1 3104096 R 399739 CDS YP_001188315.1 146307850 5107743 complement(3105512..3106741) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 3106741 5107743 Pmen_2828 Pseudomonas mendocina ymp PAS/PAC sensor signal transduction histidine kinase YP_001188315.1 3105512 R 399739 CDS YP_001188316.1 146307851 5107744 complement(3106892..3108367) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; flagellar regulatory FleQ domain protein; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 3108367 5107744 Pmen_2829 Pseudomonas mendocina ymp sigma-54 dependent trancsriptional regulator YP_001188316.1 3106892 R 399739 CDS YP_001188317.1 146307852 5107745 complement(3108627..3108920) 1 NC_009439.1 hypothetical protein 3108920 5107745 Pmen_2830 Pseudomonas mendocina ymp hypothetical protein YP_001188317.1 3108627 R 399739 CDS YP_001188318.1 146307853 5107746 complement(3108945..3109325) 1 NC_009439.1 flagellin specific chaperone; flagellar protein FliS 3109325 fliS 5107746 fliS Pseudomonas mendocina ymp flagellar protein FliS YP_001188318.1 3108945 R 399739 CDS YP_001188319.1 146307854 5107747 complement(3109398..3109790) 1 NC_009439.1 PFAM: flagellar protein FliS; flagellar protein FliS 3109790 5107747 Pmen_2832 Pseudomonas mendocina ymp flagellar protein FliS YP_001188319.1 3109398 R 399739 CDS YP_001188320.1 146307855 5107748 complement(3109790..3111253) 1 NC_009439.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; flagellar hook-associated 2 domain-containing protein 3111253 5107748 Pmen_2833 Pseudomonas mendocina ymp flagellar hook-associated 2 domain-containing protein YP_001188320.1 3109790 R 399739 CDS YP_001188321.1 146307856 5107749 complement(3111333..3111725) 1 NC_009439.1 PFAM: flagellar protein FlaG protein; flagellar protein FlaG protein 3111725 5107749 Pmen_2834 Pseudomonas mendocina ymp flagellar protein FlaG protein YP_001188321.1 3111333 R 399739 CDS YP_001188322.1 146307857 5107750 complement(3111798..3113276) 1 NC_009439.1 PFAM: flagellin domain protein; flagellin domain-containing protein 3113276 5107750 Pmen_2835 Pseudomonas mendocina ymp flagellin domain-containing protein YP_001188322.1 3111798 R 399739 CDS YP_001188323.1 146307858 5107751 complement(3113531..3118810) 1 NC_009439.1 PFAM: glycosyl transferase, family 2; CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Methyltransferase type 11; Methyltransferase type 12; glycosyl transferase family protein 3118810 5107751 Pmen_2836 Pseudomonas mendocina ymp glycosyl transferase family protein YP_001188323.1 3113531 R 399739 CDS YP_001188324.1 146307859 5107752 complement(3118803..3119465) 1 NC_009439.1 PFAM: Nucleotidyl transferase; nucleotidyl transferase 3119465 5107752 Pmen_2837 Pseudomonas mendocina ymp nucleotidyl transferase YP_001188324.1 3118803 R 399739 CDS YP_001188325.1 146307860 5107753 complement(3119441..3120046) 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 3120046 5107753 Pmen_2838 Pseudomonas mendocina ymp HAD family hydrolase YP_001188325.1 3119441 R 399739 CDS YP_001188326.1 146307861 5107754 complement(3120043..3120813) 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 3120813 5107754 Pmen_2839 Pseudomonas mendocina ymp type 12 methyltransferase YP_001188326.1 3120043 R 399739 CDS YP_001188327.1 146307862 5107755 complement(3120954..3122642) 1 NC_009439.1 With FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 3122642 flgL 5107755 flgL Pseudomonas mendocina ymp flagellar hook-associated protein FlgL YP_001188327.1 3120954 R 399739 CDS YP_001188328.1 146307863 5107756 complement(3122711..3124756) 1 NC_009439.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 3124756 flgK 5107756 flgK Pseudomonas mendocina ymp flagellar hook-associated protein FlgK YP_001188328.1 3122711 R 399739 CDS YP_001188329.1 146307864 5107757 complement(3124766..3125950) 1 NC_009439.1 Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space; flagellar rod assembly protein/muramidase FlgJ 3125950 flgJ 5107757 flgJ Pseudomonas mendocina ymp flagellar rod assembly protein/muramidase FlgJ YP_001188329.1 3124766 R 399739 CDS YP_001188330.1 146307865 5107758 complement(3125965..3127125) 1 NC_009439.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 3127125 flgI 5107758 flgI Pseudomonas mendocina ymp flagellar basal body P-ring protein YP_001188330.1 3125965 R 399739 CDS YP_001188331.1 146307866 5107759 complement(3127308..3128030) 1 NC_009439.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 3128030 flgH 5107759 flgH Pseudomonas mendocina ymp flagellar basal body L-ring protein YP_001188331.1 3127308 R 399739 CDS YP_001188332.1 146307867 5107760 complement(3128070..3128855) 1 NC_009439.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 3128855 flgG 5107760 flgG Pseudomonas mendocina ymp flagellar basal body rod protein FlgG YP_001188332.1 3128070 R 399739 CDS YP_001188333.1 146307868 5107761 complement(3128902..3129642) 1 NC_009439.1 FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgF 3129642 flgF 5107761 flgF Pseudomonas mendocina ymp flagellar basal body rod protein FlgF YP_001188333.1 3128902 R 399739 CDS YP_001188334.1 146307869 5107762 complement(3129897..3131213) 1 NC_009439.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 3131213 flgE 5107762 flgE Pseudomonas mendocina ymp flagellar hook protein FlgE YP_001188334.1 3129897 R 399739 CDS YP_001188335.1 146307870 5107763 complement(3131250..3131915) 1 NC_009439.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; in V. parahaemolyticus one set used for lateral flagella production and the other is used for the polar flagella production; flagellar basal body rod modification protein 3131915 flgD 5107763 flgD Pseudomonas mendocina ymp flagellar basal body rod modification protein YP_001188335.1 3131250 R 399739 CDS YP_001188336.1 146307871 5107764 complement(3131937..3132380) 1 NC_009439.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 3132380 flgC 5107764 flgC Pseudomonas mendocina ymp flagellar basal body rod protein FlgC YP_001188336.1 3131937 R 399739 CDS YP_001188337.1 146307872 5107765 complement(3132392..3132799) 1 NC_009439.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 3132799 flgB 5107765 flgB Pseudomonas mendocina ymp flagellar basal body rod protein FlgB YP_001188337.1 3132392 R 399739 CDS YP_001188338.1 146307873 5107766 complement(3133122..3133970) 1 NC_009439.1 PFAM: MCP methyltransferase, CheR-type; chemotaxis protein CheR 3133970 5107766 Pmen_2851 Pseudomonas mendocina ymp chemotaxis protein CheR YP_001188338.1 3133122 R 399739 CDS YP_001188339.1 146307874 5107767 complement(3133995..3134927) 1 NC_009439.1 PFAM: response regulator receiver; CheW domain protein; putative CheW protein 3134927 5107767 Pmen_2852 Pseudomonas mendocina ymp putative CheW protein YP_001188339.1 3133995 R 399739 CDS YP_001188340.1 146307875 5107768 3135005..3135763 1 NC_009439.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 3135763 flgA 5107768 flgA Pseudomonas mendocina ymp flagellar basal body P-ring biosynthesis protein FlgA YP_001188340.1 3135005 D 399739 CDS YP_001188341.1 146307876 5107769 3135897..3136232 1 NC_009439.1 PFAM: Anti-sigma-28 factor, FlgM family protein; anti-sigma-28 factor FlgM 3136232 5107769 Pmen_2854 Pseudomonas mendocina ymp anti-sigma-28 factor FlgM YP_001188341.1 3135897 D 399739 CDS YP_001188342.1 146307877 5107770 3136283..3136750 1 NC_009439.1 PFAM: FlgN family protein; FlgN family protein 3136750 5107770 Pmen_2855 Pseudomonas mendocina ymp FlgN family protein YP_001188342.1 3136283 D 399739 CDS YP_001188343.1 146307878 5107771 3136845..3137594 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 3137594 5107771 Pmen_2856 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001188343.1 3136845 D 399739 CDS YP_001188344.1 146307879 5107772 complement(3137601..3138911) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3138911 5107772 Pmen_2857 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001188344.1 3137601 R 399739 CDS YP_001188345.1 146307880 5107773 complement(3138963..3140306) 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase 3140306 5107773 Pmen_2858 Pseudomonas mendocina ymp glutamate--putrescine ligase YP_001188345.1 3138963 R 399739 CDS YP_001188346.1 146307881 5107774 3140586..3141809 1 NC_009439.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 3141809 5107774 Pmen_2859 Pseudomonas mendocina ymp serine/threonine transporter SstT YP_001188346.1 3140586 D 399739 CDS YP_001188347.1 146307882 5107775 3141964..3142731 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3142731 5107775 Pmen_2860 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188347.1 3141964 D 399739 CDS YP_001188348.1 146307883 5107776 complement(3142742..3143485) 1 NC_009439.1 PFAM: ferric iron reductase; ferric iron reductase 3143485 5107776 Pmen_2861 Pseudomonas mendocina ymp ferric iron reductase YP_001188348.1 3142742 R 399739 CDS YP_001188349.1 146307884 5107777 complement(3143507..3144493) 1 NC_009439.1 hypothetical protein 3144493 5107777 Pmen_2862 Pseudomonas mendocina ymp hypothetical protein YP_001188349.1 3143507 R 399739 CDS YP_001188350.1 146307885 5107778 complement(3144490..3145476) 1 NC_009439.1 PFAM: Taurine catabolism dioxygenase TauD/TfdA; taurine catabolism dioxygenase TauD/TfdA 3145476 5107778 Pmen_2863 Pseudomonas mendocina ymp taurine catabolism dioxygenase TauD/TfdA YP_001188350.1 3144490 R 399739 CDS YP_001188351.1 146307886 5107779 complement(3145502..3145702) 1 NC_009439.1 PFAM: MbtH domain protein; MbtH domain-containing protein 3145702 5107779 Pmen_2864 Pseudomonas mendocina ymp MbtH domain-containing protein YP_001188351.1 3145502 R 399739 CDS YP_001188352.1 146307887 5107780 complement(3145791..3146702) 1 NC_009439.1 PFAM: periplasmic binding protein; periplasmic binding protein 3146702 5107780 Pmen_2865 Pseudomonas mendocina ymp periplasmic binding protein YP_001188352.1 3145791 R 399739 CDS YP_001188353.1 146307888 5107781 complement(3146713..3148749) 1 NC_009439.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease 3148749 5107781 Pmen_2866 Pseudomonas mendocina ymp iron-hydroxamate transporter permease YP_001188353.1 3146713 R 399739 CDS YP_001188354.1 146307889 5107782 complement(3148820..3151021) 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3151021 5107782 Pmen_2867 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001188354.1 3148820 R 399739 CDS YP_001188355.1 146307890 5107783 complement(3151270..3152691) 1 NC_009439.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 3152691 5107783 Pmen_2868 Pseudomonas mendocina ymp diaminobutyrate--2-oxoglutarate aminotransferase YP_001188355.1 3151270 R 399739 CDS YP_001188356.1 146307891 5107784 complement(3152681..3168667) 1 NC_009439.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 3168667 5107784 Pmen_2869 Pseudomonas mendocina ymp amino acid adenylation domain-containing protein YP_001188356.1 3152681 R 399739 CDS YP_001188357.1 146307892 5107785 complement(3168664..3178359) 1 NC_009439.1 TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation domain-containing protein 3178359 5107785 Pmen_2870 Pseudomonas mendocina ymp amino acid adenylation domain-containing protein YP_001188357.1 3168664 R 399739 CDS YP_001188358.1 146307893 5107786 complement(3178417..3179733) 1 NC_009439.1 lysine/ornithine N-monooxygenase-like protein 3179733 5107786 Pmen_2871 Pseudomonas mendocina ymp lysine/ornithine N-monooxygenase-like protein YP_001188358.1 3178417 R 399739 CDS YP_001188359.1 146307894 5107787 complement(3179919..3181595) 1 NC_009439.1 TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 3181595 5107787 Pmen_2872 Pseudomonas mendocina ymp cyclic peptide transporter YP_001188359.1 3179919 R 399739 CDS YP_001188360.1 146307895 5107788 complement(3181596..3182228) 1 NC_009439.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 3182228 5107788 Pmen_2873 Pseudomonas mendocina ymp ECF subfamily RNA polymerase sigma-24 factor YP_001188360.1 3181596 R 399739 CDS YP_001188361.1 146307896 5107273 complement(3182662..3184056) 1 NC_009439.1 PFAM: sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 3184056 5107273 Pmen_2874 Pseudomonas mendocina ymp sodium:neurotransmitter symporter YP_001188361.1 3182662 R 399739 CDS YP_001188362.1 146307897 5107790 complement(3184188..3185246) 1 NC_009439.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 3185246 5107790 Pmen_2875 Pseudomonas mendocina ymp Glu/Leu/Phe/Val dehydrogenase YP_001188362.1 3184188 R 399739 CDS YP_001188363.1 146307898 5107791 complement(3185326..3188793) 1 NC_009439.1 Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 3188793 5107791 Pmen_2876 Pseudomonas mendocina ymp indolepyruvate ferredoxin oxidoreductase YP_001188363.1 3185326 R 399739 CDS YP_001188364.1 146307899 5107792 3188980..3189459 1 NC_009439.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 3189459 5107792 Pmen_2877 Pseudomonas mendocina ymp AsnC family transcriptional regulator YP_001188364.1 3188980 D 399739 CDS YP_001188365.1 146307900 5107793 complement(3189588..3190352) 1 NC_009439.1 required for the use of phosphonates and phosphite as phosphorus sources; carbon-phosphorus lyase complex accessory protein 3190352 phnP 5107793 phnP Pseudomonas mendocina ymp carbon-phosphorus lyase complex accessory protein YP_001188365.1 3189588 R 399739 CDS YP_001188366.1 146307901 5107794 complement(3190343..3190951) 1 NC_009439.1 TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 3190951 5107794 Pmen_2879 Pseudomonas mendocina ymp phosphonate metabolism protein/1,5-bisphosphokinase PhnN YP_001188366.1 3190343 R 399739 CDS YP_001188367.1 146307902 5107795 complement(3190951..3192096) 1 NC_009439.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; phosphonate metabolism protein PhnM 3192096 5107795 Pmen_2880 Pseudomonas mendocina ymp phosphonate metabolism protein PhnM YP_001188367.1 3190951 R 399739 CDS YP_001188368.1 146307903 5107796 complement(3192086..3192802) 1 NC_009439.1 TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL 3192802 5107796 Pmen_2881 Pseudomonas mendocina ymp phosphonate C-P lyase system protein PhnL YP_001188368.1 3192086 R 399739 CDS YP_001188369.1 146307904 5107797 complement(3192984..3193793) 1 NC_009439.1 TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK 3193793 phnK 5107797 phnK Pseudomonas mendocina ymp phosphonate C-P lyase system protein PhnK YP_001188369.1 3192984 R 399739 CDS YP_001188370.1 146307905 5107798 complement(3193790..3194659) 1 NC_009439.1 PFAM: phosphonate metabolism PhnJ; phosphonate metabolism PhnJ 3194659 5107798 Pmen_2883 Pseudomonas mendocina ymp phosphonate metabolism PhnJ YP_001188370.1 3193790 R 399739 CDS YP_001188371.1 146307906 5107799 complement(3194659..3195735) 1 NC_009439.1 PFAM: phosphonate metabolism; phosphonate metabolism protein 3195735 5107799 Pmen_2884 Pseudomonas mendocina ymp phosphonate metabolism protein YP_001188371.1 3194659 R 399739 CDS YP_001188372.1 146307907 5107800 complement(3195735..3196346) 1 NC_009439.1 PFAM: phosphonate metabolism; carbon-phosphorus lyase complex subunit 3196346 phnH 5107800 phnH Pseudomonas mendocina ymp carbon-phosphorus lyase complex subunit YP_001188372.1 3195735 R 399739 CDS YP_001188373.1 146307908 5107801 complement(3196346..3196807) 1 NC_009439.1 PFAM: phosphonate metabolism PhnG; phosphonate metabolism PhnG 3196807 5107801 Pmen_2886 Pseudomonas mendocina ymp phosphonate metabolism PhnG YP_001188373.1 3196346 R 399739 CDS YP_001188374.1 146307909 5107802 complement(3196807..3197529) 1 NC_009439.1 TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 3197529 5107802 Pmen_2887 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188374.1 3196807 R 399739 CDS YP_001188375.1 146307910 5107803 complement(3197550..3198341) 1 NC_009439.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane subunit 3198341 5107803 Pmen_2888 Pseudomonas mendocina ymp phosphonate ABC transporter inner membrane subunit YP_001188375.1 3197550 R 399739 CDS YP_001188376.1 146307911 5107804 complement(3198405..3199406) 1 NC_009439.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 3199406 5107804 Pmen_2889 Pseudomonas mendocina ymp phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001188376.1 3198405 R 399739 CDS YP_001188377.1 146307912 5107805 complement(3199460..3200284) 1 NC_009439.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATPase 3200284 5107805 Pmen_2890 Pseudomonas mendocina ymp phosphonate ABC transporter ATPase YP_001188377.1 3199460 R 399739 CDS YP_001188378.1 146307913 5107806 3200670..3200996 1 NC_009439.1 PFAM: Arc domain protein DNA binding domain protein; Arc domain-containing protein 3200996 5107806 Pmen_2891 Pseudomonas mendocina ymp Arc domain-containing protein YP_001188378.1 3200670 D 399739 CDS YP_001188379.1 146307914 5107807 complement(3201105..3202241) 1 NC_009439.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; sodium ion-translocating decarboxylase subunit beta 3202241 5107807 Pmen_2892 Pseudomonas mendocina ymp sodium ion-translocating decarboxylase subunit beta YP_001188379.1 3201105 R 399739 CDS YP_001188380.1 146307915 5107808 complement(3202252..3204030) 1 NC_009439.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 3204030 5107808 Pmen_2893 Pseudomonas mendocina ymp oxaloacetate decarboxylase YP_001188380.1 3202252 R 399739 CDS YP_001188381.1 146307916 5107809 complement(3204055..3204351) 1 NC_009439.1 PFAM: sodium pump decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma 3204351 5107809 Pmen_2894 Pseudomonas mendocina ymp sodium pump decarboxylase subunit gamma YP_001188381.1 3204055 R 399739 CDS YP_001188382.1 146307917 5107810 complement(3204511..3205488) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC family transcriptional regulator 3205488 5107810 Pmen_2895 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188382.1 3204511 R 399739 CDS YP_001188383.1 146307918 5107811 3205584..3206306 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3206306 5107811 Pmen_2896 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188383.1 3205584 D 399739 CDS YP_001188384.1 146307919 5107812 3206318..3206647 1 NC_009439.1 hypothetical protein 3206647 5107812 Pmen_2897 Pseudomonas mendocina ymp hypothetical protein YP_001188384.1 3206318 D 399739 CDS YP_001188385.1 146307920 5107813 3206677..3207138 1 NC_009439.1 ketosteroid isomerase-like protein 3207138 5107813 Pmen_2898 Pseudomonas mendocina ymp ketosteroid isomerase-like protein YP_001188385.1 3206677 D 399739 CDS YP_001188386.1 146307921 5107814 complement(3207140..3208582) 1 NC_009439.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; magnesium transporter 3208582 5107814 Pmen_2899 Pseudomonas mendocina ymp magnesium transporter YP_001188386.1 3207140 R 399739 CDS YP_001188387.1 146307922 5107815 3208905..3209399 1 NC_009439.1 hypothetical protein 3209399 5107815 Pmen_2900 Pseudomonas mendocina ymp hypothetical protein YP_001188387.1 3208905 D 399739 CDS YP_001188388.1 146307923 5107277 complement(3210012..3210197) 1 NC_009439.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3210197 5107277 Pmen_2901 Pseudomonas mendocina ymp carbon storage regulator YP_001188388.1 3210012 R 399739 CDS YP_001188389.1 146307924 5107817 complement(3210386..3211660) 1 NC_009439.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 3211660 5107817 Pmen_2902 Pseudomonas mendocina ymp aspartate kinase YP_001188389.1 3210386 R 399739 CDS YP_001188390.1 146307925 5107818 complement(3211727..3214405) 1 NC_009439.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 3214405 alaS 5107818 alaS Pseudomonas mendocina ymp alanyl-tRNA synthetase YP_001188390.1 3211727 R 399739 CDS YP_001188391.1 146307926 5107819 complement(3214478..3215482) 1 NC_009439.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; L-threonine aldolase 3215482 5107819 Pmen_2904 Pseudomonas mendocina ymp L-threonine aldolase YP_001188391.1 3214478 R 399739 CDS YP_001188392.1 146307927 5107623 complement(3215641..3216654) 1 NC_009439.1 catalyzes the formation of succinate and glutamate from N(2)-succinylglutamate in arginine catabolism; succinylglutamate desuccinylase 3216654 5107623 Pmen_2905 Pseudomonas mendocina ymp succinylglutamate desuccinylase YP_001188392.1 3215641 R 399739 CDS YP_001188393.1 146307928 5107624 complement(3216672..3216950) 1 NC_009439.1 hypothetical protein 3216950 5107624 Pmen_2906 Pseudomonas mendocina ymp hypothetical protein YP_001188393.1 3216672 R 399739 CDS YP_001188394.1 146307929 5107625 complement(3216976..3218322) 1 NC_009439.1 catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase 3218322 5107625 Pmen_2907 Pseudomonas mendocina ymp succinylarginine dihydrolase YP_001188394.1 3216976 R 399739 CDS YP_001188395.1 146307930 5107626 complement(3218322..3219785) 1 NC_009439.1 a high throughput screen identified this enzyme as an aldehyde dehydrogenase with broad substrate specificity; converts succinylglutamate semialdehyde and NAD to succinylglutamate and NADH; succinylglutamic semialdehyde dehydrogenase 3219785 astD 5107626 astD Pseudomonas mendocina ymp succinylglutamic semialdehyde dehydrogenase YP_001188395.1 3218322 R 399739 CDS YP_001188396.1 146307931 5107627 complement(3219850..3220866) 1 NC_009439.1 PFAM: arginine N-succinyltransferase beta subunit; arginine succinyltransferase 3220866 5107627 Pmen_2909 Pseudomonas mendocina ymp arginine succinyltransferase YP_001188396.1 3219850 R 399739 CDS YP_001188397.1 146307932 5107628 complement(3220924..3221940) 1 NC_009439.1 PFAM: arginine N-succinyltransferase beta subunit; arginine succinyltransferase 3221940 5107628 Pmen_2910 Pseudomonas mendocina ymp arginine succinyltransferase YP_001188397.1 3220924 R 399739 CDS YP_001188398.1 146307933 5107629 complement(3222074..3223294) 1 NC_009439.1 DapATase; bifunctional enzyme that functions in arginine and lysine biosynthetic pathways; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine or N-succinyl-2-L-amino-6-oxoheptanedioate from 2-oxoglutarate and N-succinyl-L-2,6-diaminoheptanedioate; bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 3223294 argD 5107629 argD Pseudomonas mendocina ymp bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein YP_001188398.1 3222074 R 399739 CDS YP_001188399.1 146307934 5107630 complement(3223721..3224701) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 3224701 5107630 Pmen_2912 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188399.1 3223721 R 399739 CDS YP_001188400.1 146307935 5107631 complement(3224777..3225541) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3225541 5107631 Pmen_2913 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188400.1 3224777 R 399739 CDS YP_001188401.1 146307936 5107632 complement(3225569..3226267) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3226267 5107632 Pmen_2914 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001188401.1 3225569 R 399739 CDS YP_001188402.1 146307937 5107633 complement(3226264..3226953) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3226953 5107633 Pmen_2915 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001188402.1 3226264 R 399739 CDS YP_001188403.1 146307938 5107634 complement(3227173..3227946) 1 NC_009439.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; cationic amino acid ABC transporter periplasmic binding protein 3227946 5107634 Pmen_2916 Pseudomonas mendocina ymp cationic amino acid ABC transporter periplasmic binding protein YP_001188403.1 3227173 R 399739 CDS YP_001188404.1 146307939 5107635 complement(3228402..3228926) 1 NC_009439.1 PFAM: General secretion pathway M protein; general secretion pathway M protein 3228926 5107635 Pmen_2917 Pseudomonas mendocina ymp general secretion pathway M protein YP_001188404.1 3228402 R 399739 CDS YP_001188405.1 146307940 5107636 complement(3228929..3230068) 1 NC_009439.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; general secretion pathway protein L 3230068 5107636 Pmen_2918 Pseudomonas mendocina ymp general secretion pathway protein L YP_001188405.1 3228929 R 399739 CDS YP_001188406.1 146307941 5107637 complement(3230065..3231039) 1 NC_009439.1 PFAM: General secretion pathway protein K; general secretion pathway protein K 3231039 5107637 Pmen_2919 Pseudomonas mendocina ymp general secretion pathway protein K YP_001188406.1 3230065 R 399739 CDS YP_001188407.1 146307942 5107638 complement(3231036..3231755) 1 NC_009439.1 TIGRFAM: general secretion pathway protein J; general secretion pathway protein J 3231755 5107638 Pmen_2920 Pseudomonas mendocina ymp general secretion pathway protein J YP_001188407.1 3231036 R 399739 CDS YP_001188408.1 146307943 5107639 complement(3231752..3232135) 1 NC_009439.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; general secretion pathway protein I 3232135 5107639 Pmen_2921 Pseudomonas mendocina ymp general secretion pathway protein I YP_001188408.1 3231752 R 399739 CDS YP_001188409.1 146307944 5107640 complement(3232132..3232713) 1 NC_009439.1 TIGRFAM: general secretion pathway protein H; general secretion pathway protein H 3232713 5107640 Pmen_2922 Pseudomonas mendocina ymp general secretion pathway protein H YP_001188409.1 3232132 R 399739 CDS YP_001188410.1 146307945 5107641 complement(3232685..3233110) 1 NC_009439.1 TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 3233110 5107641 Pmen_2923 Pseudomonas mendocina ymp general secretion pathway protein G YP_001188410.1 3232685 R 399739 CDS YP_001188411.1 146307946 5107642 complement(3233114..3234331) 1 NC_009439.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; general secretion pathway protein F 3234331 5107642 Pmen_2924 Pseudomonas mendocina ymp general secretion pathway protein F YP_001188411.1 3233114 R 399739 CDS YP_001188412.1 146307947 5107643 complement(3234354..3235841) 1 NC_009439.1 TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; general secretory pathway protein E 3235841 5107643 Pmen_2925 Pseudomonas mendocina ymp general secretory pathway protein E YP_001188412.1 3234354 R 399739 CDS YP_001188413.1 146307948 5107644 3236198..3236839 1 NC_009439.1 hypothetical protein 3236839 5107644 Pmen_2926 Pseudomonas mendocina ymp hypothetical protein YP_001188413.1 3236198 D 399739 CDS YP_001188414.1 146307949 5107645 3236844..3238781 1 NC_009439.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D 3238781 5107645 Pmen_2927 Pseudomonas mendocina ymp general secretion pathway protein D YP_001188414.1 3236844 D 399739 CDS YP_001188415.1 146307950 5107646 complement(3238916..3243757) 1 NC_009439.1 PFAM: NAD-glutamate dehydrogenase; glutamate dehydrogenase 3243757 5107646 Pmen_2928 Pseudomonas mendocina ymp glutamate dehydrogenase YP_001188415.1 3238916 R 399739 CDS YP_001188416.1 146307951 5107647 3244197..3245156 1 NC_009439.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; ATPase 3245156 5107647 Pmen_2929 Pseudomonas mendocina ymp ATPase YP_001188416.1 3244197 D 399739 CDS YP_001188417.1 146307952 5107648 3245212..3246201 1 NC_009439.1 PFAM: protein of unknown function DUF58; hypothetical protein 3246201 5107648 Pmen_2930 Pseudomonas mendocina ymp hypothetical protein YP_001188417.1 3245212 D 399739 CDS YP_001188418.1 146307953 5107649 3246198..3246692 1 NC_009439.1 hypothetical protein 3246692 5107649 Pmen_2931 Pseudomonas mendocina ymp hypothetical protein YP_001188418.1 3246198 D 399739 CDS YP_001188419.1 146307954 5107650 3246685..3247689 1 NC_009439.1 PFAM: von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 3247689 5107650 Pmen_2932 Pseudomonas mendocina ymp von Willebrand factor type A domain-containing protein YP_001188419.1 3246685 D 399739 CDS YP_001188420.1 146307955 5107651 3247686..3249452 1 NC_009439.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 3249452 5107651 Pmen_2933 Pseudomonas mendocina ymp hypothetical protein YP_001188420.1 3247686 D 399739 CDS YP_001188421.1 146307956 5107652 3249449..3251089 1 NC_009439.1 hypothetical protein 3251089 5107652 Pmen_2934 Pseudomonas mendocina ymp hypothetical protein YP_001188421.1 3249449 D 399739 CDS YP_001188422.1 146307957 5107653 complement(3251464..3253818) 1 NC_009439.1 PFAM: Patched family protein; hypothetical protein 3253818 5107653 Pmen_2935 Pseudomonas mendocina ymp hypothetical protein YP_001188422.1 3251464 R 399739 CDS YP_001188423.1 146307958 5107654 complement(3253837..3254928) 1 NC_009439.1 related to photosystem II stability/assembly factor; hypothetical protein 3254928 5107654 Pmen_2936 Pseudomonas mendocina ymp hypothetical protein YP_001188423.1 3253837 R 399739 CDS YP_001188424.1 146307959 5107655 complement(3255122..3256492) 1 NC_009439.1 PFAM: protein of unknown function DUF1329; hypothetical protein 3256492 5107655 Pmen_2937 Pseudomonas mendocina ymp hypothetical protein YP_001188424.1 3255122 R 399739 CDS YP_001188425.1 146307960 5107656 complement(3256561..3258558) 1 NC_009439.1 PFAM: protein of unknown function DUF1302; hypothetical protein 3258558 5107656 Pmen_2938 Pseudomonas mendocina ymp hypothetical protein YP_001188425.1 3256561 R 399739 CDS YP_001188426.1 146307961 5107657 complement(3259004..3261661) 1 NC_009439.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; aminopeptidase N 3261661 pepN 5107657 pepN Pseudomonas mendocina ymp aminopeptidase N YP_001188426.1 3259004 R 399739 CDS YP_001188427.1 146307962 5107658 complement(3261713..3262516) 1 NC_009439.1 hypothetical protein 3262516 5107658 Pmen_2940 Pseudomonas mendocina ymp hypothetical protein YP_001188427.1 3261713 R 399739 CDS YP_001188428.1 146307963 5107659 complement(3262549..3262812) 1 NC_009439.1 PFAM: protein of unknown function DUF1315; hypothetical protein 3262812 5107659 Pmen_2941 Pseudomonas mendocina ymp hypothetical protein YP_001188428.1 3262549 R 399739 CDS YP_001188429.1 146307964 5107660 complement(3262892..3263752) 1 NC_009439.1 PFAM: Rhomboid family protein; rhomboid family protein 3263752 5107660 Pmen_2942 Pseudomonas mendocina ymp rhomboid family protein YP_001188429.1 3262892 R 399739 CDS YP_001188430.1 146307965 5107661 complement(3263749..3264723) 1 NC_009439.1 PFAM: metallophosphoesterase; metallophosphoesterase 3264723 5107661 Pmen_2943 Pseudomonas mendocina ymp metallophosphoesterase YP_001188430.1 3263749 R 399739 CDS YP_001188431.1 146307966 5107662 complement(3264724..3265611) 1 NC_009439.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 3265611 ppnK 5107662 ppnK Pseudomonas mendocina ymp inorganic polyphosphate/ATP-NAD kinase YP_001188431.1 3264724 R 399739 CDS YP_001188432.1 146307967 5107663 3265695..3266663 1 NC_009439.1 hypothetical protein 3266663 5107663 Pmen_2945 Pseudomonas mendocina ymp hypothetical protein YP_001188432.1 3265695 D 399739 CDS YP_001188433.1 146307968 5107664 complement(3266664..3267773) 1 NC_009439.1 PFAM: cyclic nucleotide-binding; SMART: Rhodanese domain protein; cyclic nucleotide-binding protein 3267773 5107664 Pmen_2946 Pseudomonas mendocina ymp cyclic nucleotide-binding protein YP_001188433.1 3266664 R 399739 CDS YP_001188434.1 146307969 5107665 complement(3267796..3268740) 1 NC_009439.1 1-aminocyclopropane-1-carboxylate deaminase 3268740 5107665 Pmen_2947 Pseudomonas mendocina ymp 1-aminocyclopropane-1-carboxylate deaminase YP_001188434.1 3267796 R 399739 CDS YP_001188435.1 146307970 5107666 complement(3268743..3270110) 1 NC_009439.1 hypothetical protein 3270110 5107666 Pmen_2948 Pseudomonas mendocina ymp hypothetical protein YP_001188435.1 3268743 R 399739 CDS YP_001188436.1 146307971 5107667 3270674..3271630 1 NC_009439.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 3271630 5107667 Pmen_2949 Pseudomonas mendocina ymp TRAP transporter solute receptor TAXI family protein YP_001188436.1 3270674 D 399739 CDS YP_001188437.1 146307972 5107668 complement(3271665..3272096) 1 NC_009439.1 hypothetical protein 3272096 5107668 Pmen_2950 Pseudomonas mendocina ymp hypothetical protein YP_001188437.1 3271665 R 399739 CDS YP_001188438.1 146307973 5107669 complement(3272160..3274193) 1 NC_009439.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; 2,4-dienoyl-CoA reductase 3274193 5107669 Pmen_2951 Pseudomonas mendocina ymp 2,4-dienoyl-CoA reductase YP_001188438.1 3272160 R 399739 CDS YP_001188439.1 146307974 5107670 3274396..3275421 1 NC_009439.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3275421 5107670 Pmen_2952 Pseudomonas mendocina ymp nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001188439.1 3274396 D 399739 CDS YP_001188440.1 146307975 5107671 3275418..3276491 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 3276491 5107671 Pmen_2953 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188440.1 3275418 D 399739 CDS YP_001188441.1 146307976 5107280 complement(3277116..3277631) 1 NC_009439.1 PFAM: regulatory protein, MarR; MarR family transcriptional regulator 3277631 5107280 Pmen_2954 Pseudomonas mendocina ymp MarR family transcriptional regulator YP_001188441.1 3277116 R 399739 CDS YP_001188442.1 146307977 5107673 3277707..3279476 1 NC_009439.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 3279476 5107673 Pmen_2955 Pseudomonas mendocina ymp asparagine synthase YP_001188442.1 3277707 D 399739 CDS YP_001188443.1 146307978 5107674 3279602..3281341 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; RimK domain protein ATP-grasp; glutathione synthase 3281341 5107674 Pmen_2956 Pseudomonas mendocina ymp glutathione synthase YP_001188443.1 3279602 D 399739 CDS YP_001188444.1 146307979 5107675 3281453..3282652 1 NC_009439.1 PFAM: peptidase M20; peptidase M42 family protein; peptidase M42 family protein 3282652 5107675 Pmen_2957 Pseudomonas mendocina ymp peptidase M42 family protein YP_001188444.1 3281453 D 399739 CDS YP_001188445.1 146307980 5107676 3282837..3285581 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; integral membrane sensor hybrid histidine kinase 3285581 5107676 Pmen_2958 Pseudomonas mendocina ymp integral membrane sensor hybrid histidine kinase YP_001188445.1 3282837 D 399739 CDS YP_001188446.1 146307981 5107677 3285602..3285892 1 NC_009439.1 PFAM: protein of unknown function UPF0270; hypothetical protein 3285892 5107677 Pmen_2959 Pseudomonas mendocina ymp hypothetical protein YP_001188446.1 3285602 D 399739 CDS YP_001188447.1 146307982 5107678 complement(3285882..3286553) 1 NC_009439.1 3-methyladenine DNA glycosylase 3286553 5107678 Pmen_2960 Pseudomonas mendocina ymp 3-methyladenine DNA glycosylase YP_001188447.1 3285882 R 399739 CDS YP_001188448.1 146307983 5107679 complement(3286673..3287737) 1 NC_009439.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 3287737 5107679 Pmen_2961 Pseudomonas mendocina ymp phospho-2-dehydro-3-deoxyheptonate aldolase YP_001188448.1 3286673 R 399739 CDS YP_001188449.1 146307984 5107680 complement(3288197..3289021) 1 NC_009439.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 3289021 5107680 Pmen_2962 Pseudomonas mendocina ymp C32 tRNA thiolase YP_001188449.1 3288197 R 399739 CDS YP_001188450.1 146307985 5107681 3289122..3289715 1 NC_009439.1 PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3289715 5107681 Pmen_2963 Pseudomonas mendocina ymp heat shock protein DnaJ domain-containing protein YP_001188450.1 3289122 D 399739 CDS YP_001188451.1 146307986 5107682 3289882..3290481 1 NC_009439.1 PFAM: protein of unknown function DUF1282; hypothetical protein 3290481 5107682 Pmen_2964 Pseudomonas mendocina ymp hypothetical protein YP_001188451.1 3289882 D 399739 CDS YP_001188452.1 146307987 5107683 3290621..3291283 1 NC_009439.1 PFAM: protein of unknown function DUF1282; hypothetical protein 3291283 5107683 Pmen_2965 Pseudomonas mendocina ymp hypothetical protein YP_001188452.1 3290621 D 399739 CDS YP_001188453.1 146307988 5107684 3291345..3291839 1 NC_009439.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; hypothetical protein 3291839 5107684 Pmen_2966 Pseudomonas mendocina ymp hypothetical protein YP_001188453.1 3291345 D 399739 CDS YP_001188454.1 146307989 5107685 complement(3291961..3292338) 1 NC_009439.1 PFAM: protein of unknown function DUF1311; hypothetical protein 3292338 5107685 Pmen_2967 Pseudomonas mendocina ymp hypothetical protein YP_001188454.1 3291961 R 399739 CDS YP_001188455.1 146307990 5107686 complement(3292342..3292653) 1 NC_009439.1 hypothetical protein 3292653 5107686 Pmen_2968 Pseudomonas mendocina ymp hypothetical protein YP_001188455.1 3292342 R 399739 CDS YP_001188456.1 146307991 5107687 complement(3292728..3293909) 1 NC_009439.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3293909 5107687 Pmen_2969 Pseudomonas mendocina ymp L-carnitine dehydratase/bile acid-inducible protein F YP_001188456.1 3292728 R 399739 CDS YP_001188457.1 146307992 5107688 complement(3294054..3295694) 1 NC_009439.1 PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 3295694 5107688 Pmen_2970 Pseudomonas mendocina ymp AMP-dependent synthetase and ligase YP_001188457.1 3294054 R 399739 CDS YP_001188458.1 146307993 5107689 complement(3295796..3296935) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 3296935 5107689 Pmen_2971 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001188458.1 3295796 R 399739 CDS YP_001188459.1 146307994 5107690 3297005..3298099 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 3298099 5107690 Pmen_2972 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188459.1 3297005 D 399739 CDS YP_001188460.1 146307995 5107691 3298233..3298784 1 NC_009439.1 hypothetical protein 3298784 5107691 Pmen_2973 Pseudomonas mendocina ymp hypothetical protein YP_001188460.1 3298233 D 399739 CDS YP_001188461.1 146307996 5107692 3298865..3300247 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 3300247 5107692 Pmen_2974 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001188461.1 3298865 D 399739 CDS YP_001188462.1 146307997 5107693 complement(3300281..3301663) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3301663 5107693 Pmen_2975 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001188462.1 3300281 R 399739 CDS YP_001188463.1 146307998 5107694 complement(3301660..3302337) 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3302337 5107694 Pmen_2976 Pseudomonas mendocina ymp two component transcriptional regulator YP_001188463.1 3301660 R 399739 CDS YP_001188464.1 146307999 5107695 complement(3302403..3303008) 1 NC_009439.1 hypothetical protein 3303008 5107695 Pmen_2977 Pseudomonas mendocina ymp hypothetical protein YP_001188464.1 3302403 R 399739 CDS YP_001188465.1 146308000 5107696 complement(3303122..3304294) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3304294 5107696 Pmen_2978 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001188465.1 3303122 R 399739 CDS YP_001188466.1 146308001 5107697 3304514..3304681 1 NC_009439.1 PFAM: periplasmic nitrate reductase NapE; periplasmic nitrate reductase NapE 3304681 5107697 Pmen_2979 Pseudomonas mendocina ymp periplasmic nitrate reductase NapE YP_001188466.1 3304514 D 399739 CDS YP_001188467.1 146308002 5107698 3304711..3304971 1 NC_009439.1 PFAM: NapD family protein; NapD family protein 3304971 5107698 Pmen_2980 Pseudomonas mendocina ymp NapD family protein YP_001188467.1 3304711 D 399739 CDS YP_001188468.1 146308003 5107699 3304968..3307472 1 NC_009439.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 3307472 5107699 Pmen_2981 Pseudomonas mendocina ymp nitrate reductase catalytic subunit YP_001188468.1 3304968 D 399739 CDS YP_001188469.1 146308004 5107700 3307484..3307969 1 NC_009439.1 PFAM: Nitrate reductase cytochrome c-type subunit (NapB); periplasmic nitrate reductase subunit NapB 3307969 5107700 Pmen_2982 Pseudomonas mendocina ymp periplasmic nitrate reductase subunit NapB YP_001188469.1 3307484 D 399739 CDS YP_001188470.1 146308005 5107701 3307979..3308575 1 NC_009439.1 TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; periplasmic nitrate reductase subunit NapC 3308575 5107701 Pmen_2983 Pseudomonas mendocina ymp periplasmic nitrate reductase subunit NapC YP_001188470.1 3307979 D 399739 CDS YP_001188471.1 146308006 5107465 complement(3308727..3309185) 1 NC_009439.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 3309185 5107465 Pmen_2984 Pseudomonas mendocina ymp alkyl hydroperoxide reductase YP_001188471.1 3308727 R 399739 CDS YP_001188472.1 146308007 5107466 3309234..3310640 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 3310640 5107466 Pmen_2985 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001188472.1 3309234 D 399739 CDS YP_001188473.1 146308008 5107467 3310757..3311149 1 NC_009439.1 hypothetical protein 3311149 5107467 Pmen_2986 Pseudomonas mendocina ymp hypothetical protein YP_001188473.1 3310757 D 399739 CDS YP_001188474.1 146308009 5107468 complement(3311197..3311445) 1 NC_009439.1 hypothetical protein 3311445 5107468 Pmen_2987 Pseudomonas mendocina ymp hypothetical protein YP_001188474.1 3311197 R 399739 CDS YP_001188475.1 146308010 5107469 complement(3311595..3312812) 1 NC_009439.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; tRNA-processing RNAse BN 3312812 5107469 Pmen_2988 Pseudomonas mendocina ymp tRNA-processing RNAse BN YP_001188475.1 3311595 R 399739 CDS YP_001188476.1 146308011 5107470 3312937..3313302 1 NC_009439.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 3313302 5107470 Pmen_2989 Pseudomonas mendocina ymp arsenate reductase YP_001188476.1 3312937 D 399739 CDS YP_001188477.1 146308012 5107471 3313299..3313895 1 NC_009439.1 PFAM: flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 3313895 5107471 Pmen_2990 Pseudomonas mendocina ymp flavodoxin/nitric oxide synthase YP_001188477.1 3313299 D 399739 CDS YP_001188478.1 146308013 5107472 3313898..3314308 1 NC_009439.1 hypothetical protein 3314308 5107472 Pmen_2991 Pseudomonas mendocina ymp hypothetical protein YP_001188478.1 3313898 D 399739 CDS YP_001188479.1 146308014 5107473 3314308..3315015 1 NC_009439.1 hypothetical protein 3315015 5107473 Pmen_2992 Pseudomonas mendocina ymp hypothetical protein YP_001188479.1 3314308 D 399739 CDS YP_001188480.1 146308015 5107474 complement(3314993..3315697) 1 NC_009439.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 3315697 5107474 Pmen_2993 Pseudomonas mendocina ymp DNA replication initiation factor YP_001188480.1 3314993 R 399739 CDS YP_001188481.1 146308016 5107475 complement(3315694..3316776) 1 NC_009439.1 PFAM: protein of unknown function UPF0118; hypothetical protein 3316776 5107475 Pmen_2994 Pseudomonas mendocina ymp hypothetical protein YP_001188481.1 3315694 R 399739 CDS YP_001188482.1 146308017 5107476 complement(3316858..3317898) 1 NC_009439.1 hypothetical protein 3317898 5107476 Pmen_2995 Pseudomonas mendocina ymp hypothetical protein YP_001188482.1 3316858 R 399739 CDS YP_001188483.1 146308018 5107477 3318156..3319214 1 NC_009439.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 3319214 5107477 Pmen_2996 Pseudomonas mendocina ymp phosphoribosylaminoimidazole synthetase YP_001188483.1 3318156 D 399739 CDS YP_001188484.1 146308019 5107478 3319214..3319858 1 NC_009439.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 3319858 purN 5107478 purN Pseudomonas mendocina ymp phosphoribosylglycinamide formyltransferase YP_001188484.1 3319214 D 399739 CDS YP_001188485.1 146308020 5107479 3319867..3320583 1 NC_009439.1 hypothetical protein 3320583 5107479 Pmen_2998 Pseudomonas mendocina ymp hypothetical protein YP_001188485.1 3319867 D 399739 CDS YP_001188486.1 146308021 5107480 complement(3320705..3321913) 1 NC_009439.1 PFAM: Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 3321913 5107480 Pmen_2999 Pseudomonas mendocina ymp Rh family protein/ammonium transporter YP_001188486.1 3320705 R 399739 CDS YP_001188487.1 146308022 5107481 3322286..3322603 1 NC_009439.1 PFAM: protein of unknown function DUF883, ElaB; hypothetical protein 3322603 5107481 Pmen_3000 Pseudomonas mendocina ymp hypothetical protein YP_001188487.1 3322286 D 399739 CDS YP_001188488.1 146308023 5107482 3322612..3322971 1 NC_009439.1 hypothetical protein 3322971 5107482 Pmen_3001 Pseudomonas mendocina ymp hypothetical protein YP_001188488.1 3322612 D 399739 CDS YP_001188489.1 146308024 5107483 3322968..3323267 1 NC_009439.1 hypothetical protein 3323267 5107483 Pmen_3002 Pseudomonas mendocina ymp hypothetical protein YP_001188489.1 3322968 D 399739 CDS YP_001188490.1 146308025 5107484 3323366..3324529 1 NC_009439.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 3324529 5107484 Pmen_3003 Pseudomonas mendocina ymp diguanylate phosphodiesterase YP_001188490.1 3323366 D 399739 CDS YP_001188491.1 146308026 5107485 3324603..3325934 1 NC_009439.1 dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 3325934 5107485 Pmen_3004 Pseudomonas mendocina ymp deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001188491.1 3324603 D 399739 CDS YP_001188492.1 146308027 5107486 3325947..3327008 1 NC_009439.1 hypothetical protein 3327008 5107486 Pmen_3005 Pseudomonas mendocina ymp hypothetical protein YP_001188492.1 3325947 D 399739 CDS YP_001188493.1 146308028 5107487 3327142..3330093 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 3330093 5107487 Pmen_3006 Pseudomonas mendocina ymp metal dependent phosphohydrolase YP_001188493.1 3327142 D 399739 CDS YP_001188494.1 146308029 5107488 complement(3330197..3330538) 1 NC_009439.1 PFAM: protein of unknown function DUF469; hypothetical protein 3330538 5107488 Pmen_3007 Pseudomonas mendocina ymp hypothetical protein YP_001188494.1 3330197 R 399739 CDS YP_001188495.1 146308030 5107489 3330724..3332160 1 NC_009439.1 TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 3332160 5107489 Pmen_3008 Pseudomonas mendocina ymp D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase YP_001188495.1 3330724 D 399739 CDS YP_001188496.1 146308031 5107490 complement(3332232..3334409) 1 NC_009439.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 3334409 rlmL 5107490 rlmL Pseudomonas mendocina ymp 23S rRNA m(2)G2445 methyltransferase YP_001188496.1 3332232 R 399739 CDS YP_001188497.1 146308032 5107491 3334825..3335040 1 NC_009439.1 PFAM: ribosome modulation factor; ribosome modulation factor 3335040 5107491 Pmen_3010 Pseudomonas mendocina ymp ribosome modulation factor YP_001188497.1 3334825 D 399739 CDS YP_001188498.1 146308033 5107492 complement(3335121..3336143) 1 NC_009439.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 3336143 5107492 Pmen_3011 Pseudomonas mendocina ymp dihydroorotate dehydrogenase 2 YP_001188498.1 3335121 R 399739 CDS YP_001188499.1 146308034 5107493 complement(3336230..3336451) 1 NC_009439.1 hypothetical protein 3336451 5107493 Pmen_3012 Pseudomonas mendocina ymp hypothetical protein YP_001188499.1 3336230 R 399739 CDS YP_001188500.1 146308035 5107494 3336533..3337471 1 NC_009439.1 hypothetical protein 3337471 5107494 Pmen_3013 Pseudomonas mendocina ymp hypothetical protein YP_001188500.1 3336533 D 399739 CDS YP_001188501.1 146308036 5107495 complement(3337551..3338003) 1 NC_009439.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 3338003 recX 5107495 recX Pseudomonas mendocina ymp recombination regulator RecX YP_001188501.1 3337551 R 399739 CDS YP_001188502.1 146308037 5107496 complement(3338024..3339067) 1 NC_009439.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 3339067 recA 5107496 recA Pseudomonas mendocina ymp recombinase A YP_001188502.1 3338024 R 399739 CDS YP_001188503.1 146308038 5107497 complement(3339155..3339655) 1 NC_009439.1 PFAM: CinA domain protein; CinA domain-containing protein 3339655 5107497 Pmen_3016 Pseudomonas mendocina ymp CinA domain-containing protein YP_001188503.1 3339155 R 399739 CDS YP_001188504.1 146308039 5107281 complement(3341166..3342467) 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 3342467 5107281 Pmen_3018 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001188504.1 3341166 R 399739 CDS YP_001188505.1 146308040 5107499 3343868..3344191 1 NC_009439.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3344191 5107499 Pmen_3019 Pseudomonas mendocina ymp 4Fe-4S ferredoxin YP_001188505.1 3343868 D 399739 CDS YP_001188506.1 146308041 5107500 complement(3344674..3345681) 1 NC_009439.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls a regulon of genes required for protection against external stresses; RNA polymerase sigma factor RpoS 3345681 5107500 Pmen_3020 Pseudomonas mendocina ymp RNA polymerase sigma factor RpoS YP_001188506.1 3344674 R 399739 CDS YP_001188507.1 146308042 5107501 complement(3345783..3346664) 1 NC_009439.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; peptidase M23B 3346664 5107501 Pmen_3021 Pseudomonas mendocina ymp peptidase M23B YP_001188507.1 3345783 R 399739 CDS YP_001188508.1 146308043 5107502 complement(3346713..3347651) 1 NC_009439.1 PFAM: protein of unknown function DUF368; hypothetical protein 3347651 5107502 Pmen_3022 Pseudomonas mendocina ymp hypothetical protein YP_001188508.1 3346713 R 399739 CDS YP_001188509.1 146308044 5107503 complement(3347678..3348352) 1 NC_009439.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 3348352 pcm 5107503 pcm Pseudomonas mendocina ymp protein-L-isoaspartate O-methyltransferase YP_001188509.1 3347678 R 399739 CDS YP_001188510.1 146308045 5107504 complement(3348352..3349101) 1 NC_009439.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 3349101 surE 5107504 surE Pseudomonas mendocina ymp stationary phase survival protein SurE YP_001188510.1 3348352 R 399739 CDS YP_001188511.1 146308046 5107505 complement(3349089..3350147) 1 NC_009439.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 3350147 truD 5107505 truD Pseudomonas mendocina ymp tRNA pseudouridine synthase D YP_001188511.1 3349089 R 399739 CDS YP_001188512.1 146308047 5107506 complement(3350144..3350617) 1 NC_009439.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 3350617 ispF 5107506 ispF Pseudomonas mendocina ymp 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_001188512.1 3350144 R 399739 CDS YP_001188513.1 146308048 5107507 complement(3350744..3351586) 1 NC_009439.1 PFAM: putative esterase; carboxylesterase 3351586 5107507 Pmen_3027 Pseudomonas mendocina ymp carboxylesterase YP_001188513.1 3350744 R 399739 CDS YP_001188514.1 146308049 5107508 complement(3351699..3352811) 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3352811 5107508 Pmen_3028 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001188514.1 3351699 R 399739 CDS YP_001188515.1 146308050 5107509 3352990..3353904 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3353904 5107509 Pmen_3029 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188515.1 3352990 D 399739 CDS YP_001188516.1 146308051 5107510 3353908..3354309 1 NC_009439.1 hypothetical protein 3354309 5107510 Pmen_3030 Pseudomonas mendocina ymp hypothetical protein YP_001188516.1 3353908 D 399739 CDS YP_001188517.1 146308052 5107511 complement(3354312..3355019) 1 NC_009439.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3355019 ispD 5107511 ispD Pseudomonas mendocina ymp 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001188517.1 3354312 R 399739 CDS YP_001188518.1 146308053 5107512 complement(3355016..3355342) 1 NC_009439.1 PFAM: Septum formation initiator; cell division protein FtsB 3355342 5107512 Pmen_3032 Pseudomonas mendocina ymp cell division protein FtsB YP_001188518.1 3355016 R 399739 CDS YP_001188519.1 146308054 5107513 complement(3355472..3356761) 1 NC_009439.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3356761 eno 5107513 eno Pseudomonas mendocina ymp phosphopyruvate hydratase YP_001188519.1 3355472 R 399739 CDS YP_001188520.1 146308055 5107514 complement(3356909..3357754) 1 NC_009439.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 3357754 5107514 Pmen_3034 Pseudomonas mendocina ymp 2-dehydro-3-deoxyphosphooctonate aldolase YP_001188520.1 3356909 R 399739 CDS YP_001188521.1 146308056 5107515 complement(3357758..3359389) 1 NC_009439.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3359389 pyrG 5107515 pyrG Pseudomonas mendocina ymp CTP synthetase YP_001188521.1 3357758 R 399739 CDS YP_001188522.1 146308057 5107516 complement(3359540..3360862) 1 NC_009439.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase domain protein; tRNA(Ile)-lysidine synthetase 3360862 5107516 Pmen_3036 Pseudomonas mendocina ymp tRNA(Ile)-lysidine synthetase YP_001188522.1 3359540 R 399739 CDS YP_001188523.1 146308058 5107517 complement(3361002..3361958) 1 NC_009439.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 3361958 5107517 Pmen_3037 Pseudomonas mendocina ymp acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001188523.1 3361002 R 399739 CDS YP_001188524.1 146308059 5107518 complement(3362079..3365609) 1 NC_009439.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 3365609 dnaE 5107518 dnaE Pseudomonas mendocina ymp DNA polymerase III subunit alpha YP_001188524.1 3362079 R 399739 CDS YP_001188525.1 146308060 5107519 complement(3365681..3366307) 1 NC_009439.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 3366307 rnhB 5107519 rnhB Pseudomonas mendocina ymp ribonuclease HII YP_001188525.1 3365681 R 399739 CDS YP_001188526.1 146308061 5107520 complement(3366307..3367440) 1 NC_009439.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 3367440 lpxB 5107520 lpxB Pseudomonas mendocina ymp lipid-A-disaccharide synthase YP_001188526.1 3366307 R 399739 CDS YP_001188527.1 146308062 5107521 complement(3367446..3368222) 1 NC_009439.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 3368222 5107521 Pmen_3041 Pseudomonas mendocina ymp UDP-N-acetylglucosamine acyltransferase YP_001188527.1 3367446 R 399739 CDS YP_001188528.1 146308063 5107522 complement(3368219..3368659) 1 NC_009439.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 3368659 fabZ 5107522 fabZ Pseudomonas mendocina ymp (3R)-hydroxymyristoyl-ACP dehydratase YP_001188528.1 3368219 R 399739 CDS YP_001188529.1 146308064 5107523 complement(3368707..3369762) 1 NC_009439.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3369762 lpxD 5107523 lpxD Pseudomonas mendocina ymp UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_001188529.1 3368707 R 399739 CDS YP_001188530.1 146308065 5107524 complement(3369765..3370268) 1 NC_009439.1 PFAM: outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 3370268 5107524 Pmen_3044 Pseudomonas mendocina ymp outer membrane chaperone Skp YP_001188530.1 3369765 R 399739 CDS YP_001188531.1 146308066 5107525 complement(3370313..3372673) 1 NC_009439.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 3372673 5107525 Pmen_3045 Pseudomonas mendocina ymp surface antigen (D15) YP_001188531.1 3370313 R 399739 CDS YP_001188532.1 146308067 5107526 complement(3372761..3374113) 1 NC_009439.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; putative membrane-associated zinc metalloprotease 3374113 5107526 Pmen_3046 Pseudomonas mendocina ymp putative membrane-associated zinc metalloprotease YP_001188532.1 3372761 R 399739 CDS YP_001188533.1 146308068 5107527 complement(3374131..3375315) 1 NC_009439.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3375315 5107527 Pmen_3047 Pseudomonas mendocina ymp 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001188533.1 3374131 R 399739 CDS YP_001188534.1 146308069 5107528 complement(3375312..3376127) 1 NC_009439.1 PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 3376127 5107528 Pmen_3048 Pseudomonas mendocina ymp phosphatidate cytidylyltransferase YP_001188534.1 3375312 R 399739 CDS YP_001188535.1 146308070 5107529 complement(3376127..3376873) 1 NC_009439.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase 3376873 5107529 Pmen_3049 Pseudomonas mendocina ymp undecaprenyl pyrophosphate synthetase YP_001188535.1 3376127 R 399739 CDS YP_001188536.1 146308071 5107530 complement(3376892..3377449) 1 NC_009439.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 3377449 frr 5107530 frr Pseudomonas mendocina ymp ribosome recycling factor YP_001188536.1 3376892 R 399739 CDS YP_001188537.1 146308072 5107531 complement(3377446..3378189) 1 NC_009439.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 3378189 pyrH 5107531 pyrH Pseudomonas mendocina ymp uridylate kinase YP_001188537.1 3377446 R 399739 CDS YP_001188538.1 146308073 5107532 complement(3378373..3379236) 1 NC_009439.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 3379236 tsf 5107532 tsf Pseudomonas mendocina ymp elongation factor Ts YP_001188538.1 3378373 R 399739 CDS YP_001188539.1 146308074 5107533 complement(3379366..3380109) 1 NC_009439.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 3380109 rpsB 5107533 rpsB Pseudomonas mendocina ymp 30S ribosomal protein S2 YP_001188539.1 3379366 R 399739 CDS YP_001188540.1 146308075 5107534 3380426..3381208 1 NC_009439.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 3381208 5107534 Pmen_3054 Pseudomonas mendocina ymp methionine aminopeptidase YP_001188540.1 3380426 D 399739 CDS YP_001188541.1 146308076 5107535 3381297..3383996 1 NC_009439.1 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 3383996 glnD 5107535 glnD Pseudomonas mendocina ymp PII uridylyl-transferase YP_001188541.1 3381297 D 399739 CDS YP_001188542.1 146308077 5107536 3384034..3385230 1 NC_009439.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 3385230 5107536 Pmen_3056 Pseudomonas mendocina ymp succinyldiaminopimelate transaminase YP_001188542.1 3384034 D 399739 CDS YP_001188543.1 146308078 5107537 complement(3385248..3385964) 1 NC_009439.1 hypothetical protein 3385964 5107537 Pmen_3057 Pseudomonas mendocina ymp hypothetical protein YP_001188543.1 3385248 R 399739 CDS YP_001188544.1 146308079 5107538 3386160..3386510 1 NC_009439.1 PFAM: arsenate reductase and related; arsenate reductase-like protein 3386510 5107538 Pmen_3058 Pseudomonas mendocina ymp arsenate reductase-like protein YP_001188544.1 3386160 D 399739 CDS YP_001188545.1 146308080 5107539 3386547..3387581 1 NC_009439.1 tetrahydrodipicolinate N-succinyltransferase-like protein 3387581 5107539 Pmen_3059 Pseudomonas mendocina ymp tetrahydrodipicolinate N-succinyltransferase-like protein YP_001188545.1 3386547 D 399739 CDS YP_001188546.1 146308081 5107540 3387731..3388954 1 NC_009439.1 PFAM: aminotransferase, class V; class V aminotransferase 3388954 5107540 Pmen_3060 Pseudomonas mendocina ymp class V aminotransferase YP_001188546.1 3387731 D 399739 CDS YP_001188547.1 146308082 5107541 3388951..3389379 1 NC_009439.1 PFAM: Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 3389379 5107541 Pmen_3061 Pseudomonas mendocina ymp Fe-S metabolism associated SufE YP_001188547.1 3388951 D 399739 CDS YP_001188548.1 146308083 5107542 complement(3389425..3389895) 1 NC_009439.1 PFAM: protein of unknown function DUF1456; hypothetical protein 3389895 5107542 Pmen_3062 Pseudomonas mendocina ymp hypothetical protein YP_001188548.1 3389425 R 399739 CDS YP_001188549.1 146308084 5107543 complement(3389944..3390738) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 3390738 5107543 Pmen_3063 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001188549.1 3389944 R 399739 CDS YP_001188550.1 146308085 5107387 complement(3390882..3391691) 1 NC_009439.1 PFAM: UBA/THIF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 3391691 5107387 Pmen_3064 Pseudomonas mendocina ymp UBA/THIF-type NAD/FAD binding protein YP_001188550.1 3390882 R 399739 CDS YP_001188551.1 146308086 5107388 3391816..3392967 1 NC_009439.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 3392967 5107388 Pmen_3065 Pseudomonas mendocina ymp iron-containing alcohol dehydrogenase YP_001188551.1 3391816 D 399739 CDS YP_001188552.1 146308087 5107389 3393035..3394177 1 NC_009439.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 3394177 5107389 Pmen_3066 Pseudomonas mendocina ymp succinyl-diaminopimelate desuccinylase YP_001188552.1 3393035 D 399739 CDS YP_001188553.1 146308088 5107390 3394174..3394986 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; rRNA (guanine-N(1)-)-methyltransferase 3394986 5107390 Pmen_3067 Pseudomonas mendocina ymp rRNA (guanine-N(1)-)-methyltransferase YP_001188553.1 3394174 D 399739 CDS YP_001188554.1 146308089 5107391 3394992..3395363 1 NC_009439.1 hypothetical protein 3395363 5107391 Pmen_3068 Pseudomonas mendocina ymp hypothetical protein YP_001188554.1 3394992 D 399739 CDS YP_001188555.1 146308090 5107392 complement(3395580..3395789) 1 NC_009439.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein 3395789 5107392 Pmen_3069 Pseudomonas mendocina ymp cold-shock DNA-binding protein family protein YP_001188555.1 3395580 R 399739 CDS YP_001188556.1 146308091 5107393 complement(3396085..3397149) 1 NC_009439.1 hypothetical protein 3397149 5107393 Pmen_3070 Pseudomonas mendocina ymp hypothetical protein YP_001188556.1 3396085 R 399739 CDS YP_001188557.1 146308092 5107394 complement(3397241..3399073) 1 NC_009439.1 gliding motility ABC transporter gliding motility auxiliary component-like protein 3399073 5107394 Pmen_3071 Pseudomonas mendocina ymp gliding motility ABC transporter gliding motility auxiliary component-like protein YP_001188557.1 3397241 R 399739 CDS YP_001188558.1 146308093 5107395 complement(3399083..3399814) 1 NC_009439.1 hypothetical protein 3399814 5107395 Pmen_3072 Pseudomonas mendocina ymp hypothetical protein YP_001188558.1 3399083 R 399739 CDS YP_001188559.1 146308094 5107396 complement(3399811..3400734) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3400734 5107396 Pmen_3073 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188559.1 3399811 R 399739 CDS YP_001188560.1 146308095 5107397 3400834..3401154 1 NC_009439.1 hypothetical protein 3401154 5107397 Pmen_3074 Pseudomonas mendocina ymp hypothetical protein YP_001188560.1 3400834 D 399739 CDS YP_001188561.1 146308096 5107398 complement(3401123..3401821) 1 NC_009439.1 TIGRFAM: integron integrase; integron integrase 3401821 5107398 Pmen_3075 Pseudomonas mendocina ymp integron integrase YP_001188561.1 3401123 R 399739 CDS YP_001188562.1 146308097 5107399 3402354..3402833 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3402833 5107399 Pmen_3076 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001188562.1 3402354 D 399739 CDS YP_001188563.1 146308098 5107400 3403369..3403683 1 NC_009439.1 hypothetical protein 3403683 5107400 Pmen_3077 Pseudomonas mendocina ymp hypothetical protein YP_001188563.1 3403369 D 399739 CDS YP_001188564.1 146308099 5107401 3403761..3404114 1 NC_009439.1 hypothetical protein 3404114 5107401 Pmen_3078 Pseudomonas mendocina ymp hypothetical protein YP_001188564.1 3403761 D 399739 CDS YP_001188565.1 146308100 5107402 3404486..3405787 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 3405787 5107402 Pmen_3079 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001188565.1 3404486 D 399739 CDS YP_001188566.1 146308101 5107403 3405788..3406264 1 NC_009439.1 hypothetical protein 3406264 5107403 Pmen_3080 Pseudomonas mendocina ymp hypothetical protein YP_001188566.1 3405788 D 399739 CDS YP_001188567.1 146308102 5107404 3406355..3406804 1 NC_009439.1 hypothetical protein 3406804 5107404 Pmen_3081 Pseudomonas mendocina ymp hypothetical protein YP_001188567.1 3406355 D 399739 CDS YP_001188568.1 146308103 5107405 3407321..3407632 1 NC_009439.1 hypothetical protein 3407632 5107405 Pmen_3082 Pseudomonas mendocina ymp hypothetical protein YP_001188568.1 3407321 D 399739 CDS YP_001188569.1 146308104 5107406 3408318..3408797 1 NC_009439.1 hypothetical protein 3408797 5107406 Pmen_3083 Pseudomonas mendocina ymp hypothetical protein YP_001188569.1 3408318 D 399739 CDS YP_001188570.1 146308105 5107407 complement(3408828..3410390) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 3410390 5107407 Pmen_3084 Pseudomonas mendocina ymp transposase IS66 YP_001188570.1 3408828 R 399739 CDS YP_001188571.1 146308106 5107408 complement(3410410..3410769) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 3410769 5107408 Pmen_3085 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001188571.1 3410410 R 399739 CDS YP_001188572.1 146308107 5107409 3410838..3411218 1 NC_009439.1 hypothetical protein 3411218 5107409 Pmen_3086 Pseudomonas mendocina ymp hypothetical protein YP_001188572.1 3410838 D 399739 CDS YP_001188573.1 146308108 5107410 3411278..3411805 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; gentamicin 3'-N-acetyltransferase 3411805 5107410 Pmen_3087 Pseudomonas mendocina ymp gentamicin 3'-N-acetyltransferase YP_001188573.1 3411278 D 399739 CDS YP_001188574.1 146308109 5107411 3411886..3412278 1 NC_009439.1 hypothetical protein 3412278 5107411 Pmen_3088 Pseudomonas mendocina ymp hypothetical protein YP_001188574.1 3411886 D 399739 CDS YP_001188575.1 146308110 5107412 3412432..3413274 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3413274 5107412 Pmen_3089 Pseudomonas mendocina ymp hypothetical protein YP_001188575.1 3412432 D 399739 CDS YP_001188576.1 146308111 5107413 3413433..3413816 1 NC_009439.1 hypothetical protein 3413816 5107413 Pmen_3090 Pseudomonas mendocina ymp hypothetical protein YP_001188576.1 3413433 D 399739 CDS YP_001188577.1 146308112 5107414 3414000..3416483 1 NC_009439.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 3416483 5107414 Pmen_3091 Pseudomonas mendocina ymp glycerol-3-phosphate acyltransferase YP_001188577.1 3414000 D 399739 CDS YP_001188578.1 146308113 5107415 3416692..3417405 1 NC_009439.1 hypothetical protein 3417405 5107415 Pmen_3092 Pseudomonas mendocina ymp hypothetical protein YP_001188578.1 3416692 D 399739 CDS YP_001188579.1 146308114 5107416 complement(3417570..3419255) 1 NC_009439.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 3419255 5107416 Pmen_3093 Pseudomonas mendocina ymp malate:quinone oxidoreductase YP_001188579.1 3417570 R 399739 CDS YP_001188580.1 146308115 5107417 3419698..3421110 1 NC_009439.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3421110 5107417 Pmen_3094 Pseudomonas mendocina ymp 4Fe-4S ferredoxin YP_001188580.1 3419698 D 399739 CDS YP_001188581.1 146308116 5107418 3421308..3422783 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 3422783 5107418 Pmen_3095 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188581.1 3421308 D 399739 CDS YP_001188582.1 146308117 5107419 3423009..3424181 1 NC_009439.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; hypothetical protein 3424181 5107419 Pmen_3096 Pseudomonas mendocina ymp hypothetical protein YP_001188582.1 3423009 D 399739 CDS YP_001188583.1 146308118 5107420 complement(3424185..3424787) 1 NC_009439.1 PFAM: SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; SH3 type 3 domain-containing protein 3424787 5107420 Pmen_3097 Pseudomonas mendocina ymp SH3 type 3 domain-containing protein YP_001188583.1 3424185 R 399739 CDS YP_001188584.1 146308119 5107421 complement(3425060..3426421) 1 NC_009439.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 3426421 5107421 Pmen_3098 Pseudomonas mendocina ymp diguanylate phosphodiesterase YP_001188584.1 3425060 R 399739 CDS YP_001188585.1 146308120 5107422 complement(3426458..3427387) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3427387 5107422 Pmen_3099 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188585.1 3426458 R 399739 CDS YP_001188586.1 146308121 5107423 3427489..3428352 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 3428352 5107423 Pmen_3100 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001188586.1 3427489 D 399739 CDS YP_001188587.1 146308122 5107424 3428704..3430482 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 3430482 5107424 Pmen_3101 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001188587.1 3428704 D 399739 CDS YP_001188588.1 146308123 5107425 3430619..3431164 1 NC_009439.1 hypothetical protein 3431164 5107425 Pmen_3102 Pseudomonas mendocina ymp hypothetical protein YP_001188588.1 3430619 D 399739 CDS YP_001188589.1 146308124 5107426 3431173..3431706 1 NC_009439.1 hypothetical protein 3431706 5107426 Pmen_3103 Pseudomonas mendocina ymp hypothetical protein YP_001188589.1 3431173 D 399739 CDS YP_001188590.1 146308125 5107427 3431703..3432413 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3432413 5107427 Pmen_3104 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188590.1 3431703 D 399739 CDS YP_001188591.1 146308126 5107428 complement(3432421..3432834) 1 NC_009439.1 hypothetical protein 3432834 5107428 Pmen_3105 Pseudomonas mendocina ymp hypothetical protein YP_001188591.1 3432421 R 399739 CDS YP_001188592.1 146308127 5107429 3432938..3433615 1 NC_009439.1 hypothetical protein 3433615 5107429 Pmen_3106 Pseudomonas mendocina ymp hypothetical protein YP_001188592.1 3432938 D 399739 CDS YP_001188593.1 146308128 5107430 complement(3433664..3434443) 1 NC_009439.1 PFAM: EAL domain protein; diguanylate phosphodiesterase 3434443 5107430 Pmen_3107 Pseudomonas mendocina ymp diguanylate phosphodiesterase YP_001188593.1 3433664 R 399739 CDS YP_001188594.1 146308129 5107282 complement(3434745..3436706) 1 NC_009439.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3436706 acsA 5107282 acsA Pseudomonas mendocina ymp acetyl-CoA synthetase YP_001188594.1 3434745 R 399739 CDS YP_001188595.1 146308130 5107432 3437083..3437643 1 NC_009439.1 PFAM: CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 3437643 5107432 Pmen_3110 Pseudomonas mendocina ymp zinc-binding CMP/dCMP deaminase YP_001188595.1 3437083 D 399739 CDS YP_001188596.1 146308131 5107433 complement(3437801..3439354) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; transcriptional regulator TyrR 3439354 5107433 Pmen_3111 Pseudomonas mendocina ymp transcriptional regulator TyrR YP_001188596.1 3437801 R 399739 CDS YP_001188597.1 146308132 5107434 3439608..3440393 1 NC_009439.1 phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 3440393 phhA 5107434 phhA Pseudomonas mendocina ymp phenylalanine 4-monooxygenase YP_001188597.1 3439608 D 399739 CDS YP_001188598.1 146308133 5107435 3440515..3440868 1 NC_009439.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 3440868 phhB 5107435 phhB Pseudomonas mendocina ymp pterin-4-alpha-carbinolamine dehydratase YP_001188598.1 3440515 D 399739 CDS YP_001188599.1 146308134 5107436 3440865..3442061 1 NC_009439.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 3442061 5107436 Pmen_3114 Pseudomonas mendocina ymp aromatic amino acid aminotransferase YP_001188599.1 3440865 D 399739 CDS YP_001188600.1 146308135 5107437 3442233..3443147 1 NC_009439.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 3443147 5107437 Pmen_3115 Pseudomonas mendocina ymp glycine betaine ABC transporter substrate-binding protein YP_001188600.1 3442233 D 399739 CDS YP_001188601.1 146308136 5107438 3443157..3444317 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3444317 5107438 Pmen_3116 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001188601.1 3443157 D 399739 CDS YP_001188602.1 146308137 5107439 3444314..3445252 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3445252 5107439 Pmen_3117 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188602.1 3444314 D 399739 CDS YP_001188603.1 146308138 5107440 3445252..3445980 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3445980 5107440 Pmen_3118 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001188603.1 3445252 D 399739 CDS YP_001188604.1 146308139 5107441 3446175..3447437 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3447437 5107441 Pmen_3119 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001188604.1 3446175 D 399739 CDS YP_001188605.1 146308140 5107442 3447528..3449786 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; glucosylglycerol-phosphate synthase; PFAM: glycosyl transferase, family 20; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; glucosylglycerol-phosphate synthase 3449786 5107442 Pmen_3120 Pseudomonas mendocina ymp glucosylglycerol-phosphate synthase YP_001188605.1 3447528 D 399739 CDS YP_001188606.1 146308141 5107443 complement(3450513..3450839) 1 NC_009439.1 hypothetical protein 3450839 5107443 Pmen_3121 Pseudomonas mendocina ymp hypothetical protein YP_001188606.1 3450513 R 399739 CDS YP_001188607.1 146308142 5107444 complement(3450976..3451395) 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; glyoxalase/bleomycin resistance protein/dioxygenase 3451395 5107444 Pmen_3122 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001188607.1 3450976 R 399739 CDS YP_001188608.1 146308143 5107445 complement(3451409..3451834) 1 NC_009439.1 PFAM: DGPFAETKE family protein; DGPFAETKE family protein 3451834 5107445 Pmen_3123 Pseudomonas mendocina ymp DGPFAETKE family protein YP_001188608.1 3451409 R 399739 CDS YP_001188609.1 146308144 5107446 complement(3451963..3452706) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3452706 5107446 Pmen_3124 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001188609.1 3451963 R 399739 CDS YP_001188610.1 146308145 5107447 complement(3452905..3454302) 1 NC_009439.1 hypothetical protein 3454302 5107447 Pmen_3125 Pseudomonas mendocina ymp hypothetical protein YP_001188610.1 3452905 R 399739 CDS YP_001188611.1 146308146 5107448 complement(3454299..3455210) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3455210 5107448 Pmen_3126 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001188611.1 3454299 R 399739 CDS YP_001188612.1 146308147 5107449 complement(3455340..3456455) 1 NC_009439.1 with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 3456455 5107449 Pmen_3127 Pseudomonas mendocina ymp maltose/maltodextrin transporter ATP-binding protein YP_001188612.1 3455340 R 399739 CDS YP_001188613.1 146308148 5107450 complement(3456544..3458172) 1 NC_009439.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase 3458172 5107450 Pmen_3128 Pseudomonas mendocina ymp alpha amylase YP_001188613.1 3456544 R 399739 CDS YP_001188614.1 146308149 5107451 complement(3458457..3461201) 1 NC_009439.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 3461201 5107451 Pmen_3129 Pseudomonas mendocina ymp transcriptional regulator MalT YP_001188614.1 3458457 R 399739 CDS YP_001188615.1 146308150 5107452 complement(3461347..3462237) 1 NC_009439.1 with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 3462237 malG 5107452 malG Pseudomonas mendocina ymp maltose transporter permease YP_001188615.1 3461347 R 399739 CDS YP_001188616.1 146308151 5107453 complement(3462248..3463810) 1 NC_009439.1 with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 3463810 malF 5107453 malF Pseudomonas mendocina ymp maltose transporter membrane protein YP_001188616.1 3462248 R 399739 CDS YP_001188617.1 146308152 5107454 complement(3463872..3465059) 1 NC_009439.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 3465059 malE 5107454 malE Pseudomonas mendocina ymp maltose ABC transporter periplasmic protein YP_001188617.1 3463872 R 399739 CDS YP_001188618.1 146308153 5107455 3465317..3467380 1 NC_009439.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 3467380 malS 5107455 malS Pseudomonas mendocina ymp periplasmic alpha-amylase YP_001188618.1 3465317 D 399739 CDS YP_001188619.1 146308154 5107456 3467577..3468656 1 NC_009439.1 hypothetical protein 3468656 5107456 Pmen_3134 Pseudomonas mendocina ymp hypothetical protein YP_001188619.1 3467577 D 399739 CDS YP_001188620.1 146308155 5107457 complement(3468765..3469295) 1 NC_009439.1 PFAM: protein of unknown function DUF1568; hypothetical protein 3469295 5107457 Pmen_3135 Pseudomonas mendocina ymp hypothetical protein YP_001188620.1 3468765 R 399739 CDS YP_001188621.1 146308156 5107458 complement(3469445..3471112) 1 NC_009439.1 PFAM: glycoside hydrolase, starch-binding; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glucan 1,4-alpha-maltohexaosidase 3471112 5107458 Pmen_3136 Pseudomonas mendocina ymp glucan 1,4-alpha-maltohexaosidase YP_001188621.1 3469445 R 399739 CDS YP_001188622.1 146308157 5107459 3471482..3472753 1 NC_009439.1 porin involved in the transport of maltose and maltodextrins; maltoporin 3472753 lamB 5107459 lamB Pseudomonas mendocina ymp maltoporin YP_001188622.1 3471482 D 399739 CDS YP_001188623.1 146308158 5107460 3472879..3473802 1 NC_009439.1 PFAM: Maltose operon periplasmic; maltose operon periplasmic 3473802 5107460 Pmen_3138 Pseudomonas mendocina ymp maltose operon periplasmic YP_001188623.1 3472879 D 399739 CDS YP_001188624.1 146308159 5107461 complement(3473919..3475841) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3475841 5107461 Pmen_3139 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001188624.1 3473919 R 399739 CDS YP_001188625.1 146308160 5107462 complement(3476031..3476894) 1 NC_009439.1 PFAM: aldo/keto reductase; aldo/keto reductase 3476894 5107462 Pmen_3140 Pseudomonas mendocina ymp aldo/keto reductase YP_001188625.1 3476031 R 399739 CDS YP_001188626.1 146308161 5107463 complement(3477009..3477680) 1 NC_009439.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 3477680 5107463 Pmen_3141 Pseudomonas mendocina ymp keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_001188626.1 3477009 R 399739 CDS YP_001188627.1 146308162 5107464 complement(3477682..3478395) 1 NC_009439.1 TIGRFAM: 6-phosphogluconolactonase; 6-phosphogluconolactonase 3478395 5107464 Pmen_3142 Pseudomonas mendocina ymp 6-phosphogluconolactonase YP_001188627.1 3477682 R 399739 CDS YP_001188628.1 146308163 5106472 complement(3478382..3479848) 1 NC_009439.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 3479848 5106472 Pmen_3143 Pseudomonas mendocina ymp glucose-6-phosphate 1-dehydrogenase YP_001188628.1 3478382 R 399739 CDS YP_001188629.1 146308164 5106473 3480051..3480920 1 NC_009439.1 Represses the expression of the zwf, eda, glp and gap; DNA-binding transcriptional regulator HexR 3480920 5106473 Pmen_3144 Pseudomonas mendocina ymp DNA-binding transcriptional regulator HexR YP_001188629.1 3480051 D 399739 CDS YP_001188630.1 146308165 5106474 3481108..3482055 1 NC_009439.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 3482055 5106474 Pmen_3145 Pseudomonas mendocina ymp bile acid:sodium symporter YP_001188630.1 3481108 D 399739 CDS YP_001188631.1 146308166 5106475 3482200..3482514 1 NC_009439.1 PFAM: small multidrug resistance protein; small multidrug resistance protein 3482514 5106475 Pmen_3146 Pseudomonas mendocina ymp small multidrug resistance protein YP_001188631.1 3482200 D 399739 CDS YP_001188632.1 146308167 5106476 complement(3482598..3484472) 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; phospholipid/glycerol acyltransferase 3484472 5106476 Pmen_3147 Pseudomonas mendocina ymp phospholipid/glycerol acyltransferase YP_001188632.1 3482598 R 399739 CDS YP_001188633.1 146308168 5106477 3485148..3485852 1 NC_009439.1 PFAM: 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 3485852 5106477 Pmen_3148 Pseudomonas mendocina ymp 4'-phosphopantetheinyl transferase YP_001188633.1 3485148 D 399739 CDS YP_001188634.1 146308169 5106478 complement(3486042..3487682) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 3487682 5106478 Pmen_3149 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001188634.1 3486042 R 399739 CDS YP_001188635.1 146308170 5106479 complement(3487660..3488409) 1 NC_009439.1 PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3488409 5106479 Pmen_3150 Pseudomonas mendocina ymp two component transcriptional regulator YP_001188635.1 3487660 R 399739 CDS YP_001188636.1 146308171 5106480 3489275..3492181 1 NC_009439.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 3492181 5106480 Pmen_3151 Pseudomonas mendocina ymp ribonucleotide-diphosphate reductase subunit alpha YP_001188636.1 3489275 D 399739 CDS YP_001188637.1 146308172 5106481 3492649..3493899 1 NC_009439.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 3493899 5106481 Pmen_3152 Pseudomonas mendocina ymp ribonucleotide-diphosphate reductase subunit beta YP_001188637.1 3492649 D 399739 CDS YP_001188638.1 146308173 5106482 3494009..3495322 1 NC_009439.1 hypothetical protein 3495322 5106482 Pmen_3153 Pseudomonas mendocina ymp hypothetical protein YP_001188638.1 3494009 D 399739 CDS YP_001188639.1 146308174 5106483 3496507..3496683 1 NC_009439.1 hypothetical protein 3496683 5106483 Pmen_3154 Pseudomonas mendocina ymp hypothetical protein YP_001188639.1 3496507 D 399739 CDS YP_001188640.1 146308175 5106484 3497006..3498067 1 NC_009439.1 PFAM: aldo/keto reductase; aldo/keto reductase 3498067 5106484 Pmen_3155 Pseudomonas mendocina ymp aldo/keto reductase YP_001188640.1 3497006 D 399739 CDS YP_001188641.1 146308176 5106485 complement(3498087..3498971) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3498971 5106485 Pmen_3156 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188641.1 3498087 R 399739 CDS YP_001188642.1 146308177 5106486 complement(3499124..3499315) 1 NC_009439.1 PFAM: protein of unknown function DUF1289; hypothetical protein 3499315 5106486 Pmen_3157 Pseudomonas mendocina ymp hypothetical protein YP_001188642.1 3499124 R 399739 CDS YP_001188643.1 146308178 5106487 complement(3499299..3499634) 1 NC_009439.1 hypothetical protein 3499634 5106487 Pmen_3158 Pseudomonas mendocina ymp hypothetical protein YP_001188643.1 3499299 R 399739 CDS YP_001188644.1 146308179 5106488 complement(3499859..3500758) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3500758 5106488 Pmen_3159 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188644.1 3499859 R 399739 CDS YP_001188645.1 146308180 5106489 3500879..3501580 1 NC_009439.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone) 3501580 5106489 Pmen_3160 Pseudomonas mendocina ymp NAD(P)H dehydrogenase (quinone) YP_001188645.1 3500879 D 399739 CDS YP_001188646.1 146308181 5106490 complement(3501616..3502359) 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 3502359 5106490 Pmen_3161 Pseudomonas mendocina ymp type 12 methyltransferase YP_001188646.1 3501616 R 399739 CDS YP_001188647.1 146308182 5106491 3502644..3503084 1 NC_009439.1 hypothetical protein 3503084 5106491 Pmen_3162 Pseudomonas mendocina ymp hypothetical protein YP_001188647.1 3502644 D 399739 CDS YP_001188648.1 146308183 5106492 3503299..3503646 1 NC_009439.1 PFAM: protein of unknown function DUF861, cupin_3; hypothetical protein 3503646 5106492 Pmen_3163 Pseudomonas mendocina ymp hypothetical protein YP_001188648.1 3503299 D 399739 CDS YP_001188649.1 146308184 5106493 3503815..3504291 1 NC_009439.1 PFAM: proteinase inhibitor I11, ecotin; proteinase inhibitor I11, ecotin 3504291 5106493 Pmen_3164 Pseudomonas mendocina ymp proteinase inhibitor I11, ecotin YP_001188649.1 3503815 D 399739 CDS YP_001188650.1 146308185 5106494 complement(3504406..3505050) 1 NC_009439.1 TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; hypothetical protein 3505050 5106494 Pmen_3165 Pseudomonas mendocina ymp hypothetical protein YP_001188650.1 3504406 R 399739 CDS YP_001188651.1 146308186 5106495 3505208..3507217 1 NC_009439.1 PFAM: peptidase U32; peptidase U32 3507217 5106495 Pmen_3166 Pseudomonas mendocina ymp peptidase U32 YP_001188651.1 3505208 D 399739 CDS YP_001188652.1 146308187 5106496 complement(3507314..3507610) 1 NC_009439.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3507610 5106496 Pmen_3167 Pseudomonas mendocina ymp antibiotic biosynthesis monooxygenase YP_001188652.1 3507314 R 399739 CDS YP_001188653.1 146308188 5106497 3507765..3508352 1 NC_009439.1 PFAM: NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 3508352 5106497 Pmen_3168 Pseudomonas mendocina ymp NAD(P)H dehydrogenase (quinone) YP_001188653.1 3507765 D 399739 CDS YP_001188654.1 146308189 5106498 complement(3508359..3509198) 1 NC_009439.1 PFAM: Allergen V5/Tpx-1 family protein; Allergen V5/Tpx-1 family protein 3509198 5106498 Pmen_3169 Pseudomonas mendocina ymp Allergen V5/Tpx-1 family protein YP_001188654.1 3508359 R 399739 CDS YP_001188655.1 146308190 5106499 3509407..3509772 1 NC_009439.1 hypothetical protein 3509772 5106499 Pmen_3170 Pseudomonas mendocina ymp hypothetical protein YP_001188655.1 3509407 D 399739 CDS YP_001188656.1 146308191 5106500 3509926..3510207 1 NC_009439.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 3510207 5106500 Pmen_3171 Pseudomonas mendocina ymp PpiC-type peptidyl-prolyl cis-trans isomerase YP_001188656.1 3509926 D 399739 CDS YP_001188657.1 146308192 5106501 3510286..3511842 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 3511842 5106501 Pmen_3172 Pseudomonas mendocina ymp diguanylate cyclase YP_001188657.1 3510286 D 399739 CDS YP_001188658.1 146308193 5106502 complement(3511866..3512759) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3512759 5106502 Pmen_3173 Pseudomonas mendocina ymp hypothetical protein YP_001188658.1 3511866 R 399739 CDS YP_001188659.1 146308194 5106503 3512937..3513671 1 NC_009439.1 PFAM: protein of unknown function DUF81; hypothetical protein 3513671 5106503 Pmen_3174 Pseudomonas mendocina ymp hypothetical protein YP_001188659.1 3512937 D 399739 CDS YP_001188660.1 146308195 5106504 complement(3513796..3514839) 1 NC_009439.1 PFAM: protein of unknown function DUF1176; hypothetical protein 3514839 5106504 Pmen_3175 Pseudomonas mendocina ymp hypothetical protein YP_001188660.1 3513796 R 399739 CDS YP_001188661.1 146308196 5106505 complement(3514908..3515618) 1 NC_009439.1 PFAM: oxidoreductase domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; NADP oxidoreductase, coenzyme F420-dependent 3515618 5106505 Pmen_3176 Pseudomonas mendocina ymp NADP oxidoreductase, coenzyme F420-dependent YP_001188661.1 3514908 R 399739 CDS YP_001188662.1 146308197 5106506 3515846..3515977 1 NC_009439.1 hypothetical protein 3515977 5106506 Pmen_3177 Pseudomonas mendocina ymp hypothetical protein YP_001188662.1 3515846 D 399739 CDS YP_001188663.1 146308198 5106507 3516149..3516850 1 NC_009439.1 PFAM: protein of unknown function DUF28; hypothetical protein 3516850 5106507 Pmen_3178 Pseudomonas mendocina ymp hypothetical protein YP_001188663.1 3516149 D 399739 CDS YP_001188664.1 146308199 5106508 3516893..3517282 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 3517282 5106508 Pmen_3179 Pseudomonas mendocina ymp NUDIX hydrolase YP_001188664.1 3516893 D 399739 CDS YP_001188665.1 146308200 5106509 3517451..3517780 1 NC_009439.1 hypothetical protein 3517780 5106509 Pmen_3180 Pseudomonas mendocina ymp hypothetical protein YP_001188665.1 3517451 D 399739 CDS YP_001188666.1 146308201 5106510 complement(3517890..3518798) 1 NC_009439.1 PFAM: Forkhead-associated protein; FHA domain-containing protein 3518798 5106510 Pmen_3181 Pseudomonas mendocina ymp FHA domain-containing protein YP_001188666.1 3517890 R 399739 CDS YP_001188667.1 146308202 5106511 complement(3518814..3520298) 1 NC_009439.1 PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; protein kinase 3520298 5106511 Pmen_3182 Pseudomonas mendocina ymp protein kinase YP_001188667.1 3518814 R 399739 CDS YP_001188668.1 146308203 5106512 complement(3520315..3521139) 1 NC_009439.1 PFAM: protein phosphatase 2C domain protein; protein phosphatase 2C domain-containing protein 3521139 5106512 Pmen_3183 Pseudomonas mendocina ymp protein phosphatase 2C domain-containing protein YP_001188668.1 3520315 R 399739 CDS YP_001188669.1 146308204 5106513 3521245..3521655 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3521655 5106513 Pmen_3184 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001188669.1 3521245 D 399739 CDS YP_001188670.1 146308205 5106514 3521761..3522804 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 3522804 5106514 Pmen_3185 Pseudomonas mendocina ymp diguanylate cyclase YP_001188670.1 3521761 D 399739 CDS YP_001188671.1 146308206 5106515 complement(3522808..3523134) 1 NC_009439.1 hypothetical protein 3523134 5106515 Pmen_3186 Pseudomonas mendocina ymp hypothetical protein YP_001188671.1 3522808 R 399739 CDS YP_001188672.1 146308207 5107283 complement(3523400..3524242) 1 NC_009439.1 SMART: RNA binding S1 domain protein; GntR family transcriptional regulator 3524242 5107283 Pmen_3187 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188672.1 3523400 R 399739 CDS YP_001188673.1 146308208 5106517 3524483..3524674 1 NC_009439.1 hypothetical protein 3524674 5106517 Pmen_3188 Pseudomonas mendocina ymp hypothetical protein YP_001188673.1 3524483 D 399739 CDS YP_001188674.1 146308209 5106518 complement(3524774..3525919) 1 NC_009439.1 PFAM: glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase 3525919 5106518 Pmen_3189 Pseudomonas mendocina ymp glucose sorbosone dehydrogenase YP_001188674.1 3524774 R 399739 CDS YP_001188675.1 146308210 5106519 complement(3526003..3526683) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3526683 5106519 Pmen_3190 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001188675.1 3526003 R 399739 CDS YP_001188676.1 146308211 5106520 3526871..3527848 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3527848 5106520 Pmen_3191 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001188676.1 3526871 D 399739 CDS YP_001188677.1 146308212 5106521 complement(3528073..3529401) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3529401 5106521 Pmen_3192 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001188677.1 3528073 R 399739 CDS YP_001188678.1 146308213 5106522 3529679..3531847 1 NC_009439.1 hypothetical protein 3531847 5106522 Pmen_3193 Pseudomonas mendocina ymp hypothetical protein YP_001188678.1 3529679 D 399739 CDS YP_001188679.1 146308214 5106523 3531902..3534082 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MHYT domain protein; diguanylate cyclase/phosphodiesterase 3534082 5106523 Pmen_3194 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001188679.1 3531902 D 399739 CDS YP_001188680.1 146308215 5106524 complement(3534370..3535161) 1 NC_009439.1 PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 3535161 5106524 Pmen_3195 Pseudomonas mendocina ymp hydroxypyruvate isomerase YP_001188680.1 3534370 R 399739 CDS YP_001188681.1 146308216 5106525 complement(3535152..3536042) 1 NC_009439.1 PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 3536042 5106525 Pmen_3196 Pseudomonas mendocina ymp 3-hydroxyisobutyrate dehydrogenase YP_001188681.1 3535152 R 399739 CDS YP_001188682.1 146308217 5106526 3536178..3537029 1 NC_009439.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 3537029 5106526 Pmen_3197 Pseudomonas mendocina ymp phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001188682.1 3536178 D 399739 CDS YP_001188683.1 146308218 5106527 3537026..3537826 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3537826 5106527 Pmen_3198 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188683.1 3537026 D 399739 CDS YP_001188684.1 146308219 5106528 3537820..3538647 1 NC_009439.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane subunit 3538647 5106528 Pmen_3199 Pseudomonas mendocina ymp phosphonate ABC transporter inner membrane subunit YP_001188684.1 3537820 D 399739 CDS YP_001188685.1 146308220 5106529 3538644..3539405 1 NC_009439.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; phosphonate ABC transporter inner membrane subunit 3539405 5106529 Pmen_3200 Pseudomonas mendocina ymp phosphonate ABC transporter inner membrane subunit YP_001188685.1 3538644 D 399739 CDS YP_001188686.1 146308221 5106530 complement(3539518..3540066) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 3540066 5106530 Pmen_3201 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188686.1 3539518 R 399739 CDS YP_001188687.1 146308222 5106531 complement(3540433..3541935) 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3541935 5106531 Pmen_3202 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001188687.1 3540433 R 399739 CDS YP_001188688.1 146308223 5106532 complement(3542103..3542675) 1 NC_009439.1 hypothetical protein 3542675 5106532 Pmen_3203 Pseudomonas mendocina ymp hypothetical protein YP_001188688.1 3542103 R 399739 CDS YP_001188689.1 146308224 5106533 complement(3542972..3544684) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; Activator of aromatic catabolism; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family transcriptional regulator 3544684 5106533 Pmen_3204 Pseudomonas mendocina ymp Fis family transcriptional regulator YP_001188689.1 3542972 R 399739 CDS YP_001188690.1 146308225 5106534 complement(3545313..3546050) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3546050 5106534 Pmen_3205 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188690.1 3545313 R 399739 CDS YP_001188691.1 146308226 5106535 complement(3546184..3547113) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3547113 5106535 Pmen_3206 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188691.1 3546184 R 399739 CDS YP_001188692.1 146308227 5106536 complement(3547409..3547699) 1 NC_009439.1 hypothetical protein 3547699 5106536 Pmen_3207 Pseudomonas mendocina ymp hypothetical protein YP_001188692.1 3547409 R 399739 CDS YP_001188693.1 146308228 5106537 complement(3547696..3548514) 1 NC_009439.1 PFAM: NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 3548514 5106537 Pmen_3208 Pseudomonas mendocina ymp NAD(P)H dehydrogenase (quinone) YP_001188693.1 3547696 R 399739 CDS YP_001188694.1 146308229 5106538 3548604..3549542 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3549542 5106538 Pmen_3209 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188694.1 3548604 D 399739 CDS YP_001188695.1 146308230 5106539 complement(3549764..3551386) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 3551386 5106539 Pmen_3210 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001188695.1 3549764 R 399739 CDS YP_001188696.1 146308231 5106540 3551449..3552240 1 NC_009439.1 XRE family transcriptional regulator 3552240 5106540 Pmen_3211 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001188696.1 3551449 D 399739 CDS YP_001188697.1 146308232 5106541 complement(3552363..3552797) 1 NC_009439.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 3552797 5106541 Pmen_3212 Pseudomonas mendocina ymp glutathione-dependent formaldehyde-activating protein YP_001188697.1 3552363 R 399739 CDS YP_001188698.1 146308233 5106542 3552906..3553790 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3553790 5106542 Pmen_3213 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188698.1 3552906 D 399739 CDS YP_001188699.1 146308234 5106543 complement(3553849..3554721) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC-type transcriptional regulator domain protein; AraC family transcriptional regulator 3554721 5106543 Pmen_3214 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188699.1 3553849 R 399739 CDS YP_001188700.1 146308235 5106544 3554859..3555614 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3555614 5106544 Pmen_3215 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188700.1 3554859 D 399739 CDS YP_001188701.1 146308236 5106545 3555936..3556787 1 NC_009439.1 PFAM: Ku domain protein; Ku domain-containing protein 3556787 5106545 Pmen_3216 Pseudomonas mendocina ymp Ku domain-containing protein YP_001188701.1 3555936 D 399739 CDS YP_001188702.1 146308237 5106546 3556803..3559316 1 NC_009439.1 catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 3559316 ligD 5106546 ligD Pseudomonas mendocina ymp ATP-dependent DNA ligase YP_001188702.1 3556803 D 399739 CDS YP_001188703.1 146308238 5106547 complement(3559506..3561161) 1 NC_009439.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3561161 5106547 Pmen_3218 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001188703.1 3559506 R 399739 CDS YP_001188704.1 146308239 5106548 3561592..3562035 1 NC_009439.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 3562035 5106548 Pmen_3219 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001188704.1 3561592 D 399739 CDS YP_001188705.1 146308240 5106549 complement(3562156..3563208) 1 NC_009439.1 hypothetical protein 3563208 5106549 Pmen_3220 Pseudomonas mendocina ymp hypothetical protein YP_001188705.1 3562156 R 399739 CDS YP_001188706.1 146308241 5106550 3563404..3564639 1 NC_009439.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3564639 5106550 Pmen_3221 Pseudomonas mendocina ymp NADH:flavin oxidoreductase YP_001188706.1 3563404 D 399739 CDS YP_001188707.1 146308242 5106729 3564796..3564969 1 NC_009439.1 hypothetical protein 3564969 5106729 Pmen_3222 Pseudomonas mendocina ymp hypothetical protein YP_001188707.1 3564796 D 399739 CDS YP_001188708.1 146308243 5106730 complement(3565272..3567317) 1 NC_009439.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; pyridoxamine 5'-phosphate oxidase-related, FMN-binding; oxidoreductase FAD-binding subunit 3567317 5106730 Pmen_3223 Pseudomonas mendocina ymp oxidoreductase FAD-binding subunit YP_001188708.1 3565272 R 399739 CDS YP_001188709.1 146308244 5106731 complement(3567514..3568140) 1 NC_009439.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 3568140 5106731 Pmen_3224 Pseudomonas mendocina ymp glutathione S-transferase domain-containing protein YP_001188709.1 3567514 R 399739 CDS YP_001188710.1 146308245 5106732 complement(3568277..3569167) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3569167 5106732 Pmen_3225 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188710.1 3568277 R 399739 CDS YP_001188711.1 146308246 5106733 complement(3569164..3570087) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3570087 5106733 Pmen_3226 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188711.1 3569164 R 399739 CDS YP_001188712.1 146308247 5106734 complement(3570131..3570751) 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 3570751 5106734 Pmen_3227 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001188712.1 3570131 R 399739 CDS YP_001188713.1 146308248 5106735 complement(3570889..3572076) 1 NC_009439.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 3572076 5106735 Pmen_3228 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001188713.1 3570889 R 399739 CDS YP_001188714.1 146308249 5106736 complement(3572261..3573751) 1 NC_009439.1 PFAM: protein of unknown function DUF344; hypothetical protein 3573751 5106736 Pmen_3229 Pseudomonas mendocina ymp hypothetical protein YP_001188714.1 3572261 R 399739 CDS YP_001188715.1 146308250 5106737 3573898..3575871 1 NC_009439.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 3575871 mnmC 5106737 mnmC Pseudomonas mendocina ymp 5-methylaminomethyl-2-thiouridine methyltransferase YP_001188715.1 3573898 D 399739 CDS YP_001188716.1 146308251 5106738 complement(3575893..3577956) 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 3577956 5106738 Pmen_3231 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001188716.1 3575893 R 399739 CDS YP_001188717.1 146308252 5106739 complement(3578088..3578993) 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3578993 5106739 Pmen_3232 Pseudomonas mendocina ymp hypothetical protein YP_001188717.1 3578088 R 399739 CDS YP_001188718.1 146308253 5106740 3579143..3581029 1 NC_009439.1 PFAM: UvrD/REP helicase; UvrD/REP helicase 3581029 5106740 Pmen_3233 Pseudomonas mendocina ymp UvrD/REP helicase YP_001188718.1 3579143 D 399739 CDS YP_001188719.1 146308254 5106741 complement(3581261..3581794) 1 NC_009439.1 PFAM: cytochrome B561; cytochrome B561 3581794 5106741 Pmen_3234 Pseudomonas mendocina ymp cytochrome B561 YP_001188719.1 3581261 R 399739 CDS YP_001188720.1 146308255 5106742 complement(3581987..3584524) 1 NC_009439.1 necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 3584524 5106742 Pmen_3235 Pseudomonas mendocina ymp glucosyltransferase MdoH YP_001188720.1 3581987 R 399739 CDS YP_001188721.1 146308256 5106743 complement(3584517..3586052) 1 NC_009439.1 involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G 3586052 mdoG 5106743 mdoG Pseudomonas mendocina ymp glucan biosynthesis protein G YP_001188721.1 3584517 R 399739 CDS YP_001188722.1 146308257 5106744 complement(3586312..3588618) 1 NC_009439.1 PFAM: glycoside hydrolase, family 3 domain protein; glycoside hydrolase family protein 3588618 5106744 Pmen_3237 Pseudomonas mendocina ymp glycoside hydrolase family protein YP_001188722.1 3586312 R 399739 CDS YP_001188723.1 146308258 5106745 3588825..3589697 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 3589697 5106745 Pmen_3238 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188723.1 3588825 D 399739 CDS YP_001188724.1 146308259 5106746 3589845..3592475 1 NC_009439.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; non-specific serine/threonine protein kinase 3592475 5106746 Pmen_3239 Pseudomonas mendocina ymp non-specific serine/threonine protein kinase YP_001188724.1 3589845 D 399739 CDS YP_001188725.1 146308260 5106747 complement(3592519..3593013) 1 NC_009439.1 PFAM: phosphate-starvation-inducible E; phosphate-starvation-inducible E 3593013 5106747 Pmen_3240 Pseudomonas mendocina ymp phosphate-starvation-inducible E YP_001188725.1 3592519 R 399739 CDS YP_001188726.1 146308261 5106748 3593300..3593563 1 NC_009439.1 PFAM: YebG family protein; hypothetical protein 3593563 5106748 Pmen_3241 Pseudomonas mendocina ymp hypothetical protein YP_001188726.1 3593300 D 399739 CDS YP_001188727.1 146308262 5106749 complement(3593734..3593985) 1 NC_009439.1 hypothetical protein 3593985 5106749 Pmen_3242 Pseudomonas mendocina ymp hypothetical protein YP_001188727.1 3593734 R 399739 CDS YP_001188728.1 146308263 5106750 3594292..3594696 1 NC_009439.1 PFAM: protein of unknown function DUF488; hypothetical protein 3594696 5106750 Pmen_3243 Pseudomonas mendocina ymp hypothetical protein YP_001188728.1 3594292 D 399739 CDS YP_001188729.1 146308264 5106751 3594983..3595849 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3595849 5106751 Pmen_3244 Pseudomonas mendocina ymp hypothetical protein YP_001188729.1 3594983 D 399739 CDS YP_001188730.1 146308265 5106752 complement(3595877..3596983) 1 NC_009439.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; branched-chain alpha-keto acid dehydrogenase subunit E2 3596983 5106752 Pmen_3245 Pseudomonas mendocina ymp branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001188730.1 3595877 R 399739 CDS YP_001188731.1 146308266 5106753 complement(3597053..3598057) 1 NC_009439.1 PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region 3598057 5106753 Pmen_3246 Pseudomonas mendocina ymp transketolase, central region YP_001188731.1 3597053 R 399739 CDS YP_001188732.1 146308267 5106754 complement(3598050..3599138) 1 NC_009439.1 PFAM: dehydrogenase, E1 component; pyruvate dehydrogenase 3599138 5106754 Pmen_3247 Pseudomonas mendocina ymp pyruvate dehydrogenase YP_001188732.1 3598050 R 399739 CDS YP_001188733.1 146308268 5106755 complement(3599239..3600261) 1 NC_009439.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; Glu/Leu/Phe/Val dehydrogenase 3600261 5106755 Pmen_3248 Pseudomonas mendocina ymp Glu/Leu/Phe/Val dehydrogenase YP_001188733.1 3599239 R 399739 CDS YP_001188734.1 146308269 5106756 3600362..3601165 1 NC_009439.1 hypothetical protein 3601165 5106756 Pmen_3249 Pseudomonas mendocina ymp hypothetical protein YP_001188734.1 3600362 D 399739 CDS YP_001188735.1 146308270 5106757 3601322..3601993 1 NC_009439.1 hypothetical protein 3601993 5106757 Pmen_3250 Pseudomonas mendocina ymp hypothetical protein YP_001188735.1 3601322 D 399739 CDS YP_001188736.1 146308271 5106758 3602074..3602427 1 NC_009439.1 hypothetical protein 3602427 5106758 Pmen_3251 Pseudomonas mendocina ymp hypothetical protein YP_001188736.1 3602074 D 399739 CDS YP_001188737.1 146308272 5106759 3602431..3603390 1 NC_009439.1 PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 3603390 5106759 Pmen_3252 Pseudomonas mendocina ymp secretion protein HlyD family protein YP_001188737.1 3602431 D 399739 CDS YP_001188738.1 146308273 5106760 3603452..3603820 1 NC_009439.1 hypothetical protein 3603820 5106760 Pmen_3253 Pseudomonas mendocina ymp hypothetical protein YP_001188738.1 3603452 D 399739 CDS YP_001188739.1 146308274 5106761 3603871..3605199 1 NC_009439.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 3605199 potE 5106761 potE Pseudomonas mendocina ymp putrescine transporter YP_001188739.1 3603871 D 399739 CDS YP_001188740.1 146308275 5106762 3605211..3606104 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3606104 5106762 Pmen_3255 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001188740.1 3605211 D 399739 CDS YP_001188741.1 146308276 5106763 complement(3606113..3606469) 1 NC_009439.1 PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 3606469 5106763 Pmen_3256 Pseudomonas mendocina ymp type IV pilus assembly PilZ YP_001188741.1 3606113 R 399739 CDS YP_001188742.1 146308277 5106764 complement(3606529..3606951) 1 NC_009439.1 hypothetical protein 3606951 5106764 Pmen_3257 Pseudomonas mendocina ymp hypothetical protein YP_001188742.1 3606529 R 399739 CDS YP_001188743.1 146308278 5106765 complement(3607024..3607398) 1 NC_009439.1 hypothetical protein 3607398 5106765 Pmen_3258 Pseudomonas mendocina ymp hypothetical protein YP_001188743.1 3607024 R 399739 CDS YP_001188744.1 146308279 5106766 3607551..3608357 1 NC_009439.1 hypothetical protein 3608357 5106766 Pmen_3259 Pseudomonas mendocina ymp hypothetical protein YP_001188744.1 3607551 D 399739 CDS YP_001188745.1 146308280 5106767 3608426..3609334 1 NC_009439.1 PFAM: UspA domain protein; UspA domain-containing protein 3609334 5106767 Pmen_3260 Pseudomonas mendocina ymp UspA domain-containing protein YP_001188745.1 3608426 D 399739 CDS YP_001188746.1 146308281 5106768 3609407..3610858 1 NC_009439.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 3610858 5106768 Pmen_3261 Pseudomonas mendocina ymp pyruvate kinase YP_001188746.1 3609407 D 399739 CDS YP_001188747.1 146308282 5106769 complement(3611090..3611863) 1 NC_009439.1 PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3611863 5106769 Pmen_3262 Pseudomonas mendocina ymp enoyl-CoA hydratase/isomerase YP_001188747.1 3611090 R 399739 CDS YP_001188748.1 146308283 5106770 complement(3611955..3612893) 1 NC_009439.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; hypothetical protein 3612893 5106770 Pmen_3263 Pseudomonas mendocina ymp hypothetical protein YP_001188748.1 3611955 R 399739 CDS YP_001188749.1 146308284 5106771 complement(3612886..3614013) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 3614013 5106771 Pmen_3264 Pseudomonas mendocina ymp diguanylate cyclase YP_001188749.1 3612886 R 399739 CDS YP_001188750.1 146308285 5106772 3614297..3615820 1 NC_009439.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; fumarase 3615820 5106772 Pmen_3265 Pseudomonas mendocina ymp fumarase YP_001188750.1 3614297 D 399739 CDS YP_001188751.1 146308286 5106773 complement(3615882..3617222) 1 NC_009439.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 3617222 5106773 Pmen_3266 Pseudomonas mendocina ymp D-serine dehydratase YP_001188751.1 3615882 R 399739 CDS YP_001188752.1 146308287 5106774 3617362..3618036 1 NC_009439.1 PFAM: protein of unknown function DUF1028; hypothetical protein 3618036 5106774 Pmen_3267 Pseudomonas mendocina ymp hypothetical protein YP_001188752.1 3617362 D 399739 CDS YP_001188753.1 146308288 5106775 3618327..3619661 1 NC_009439.1 beta-xylosidase-like protein 3619661 5106775 Pmen_3268 Pseudomonas mendocina ymp beta-xylosidase-like protein YP_001188753.1 3618327 D 399739 CDS YP_001188754.1 146308289 5106776 complement(3619656..3620765) 1 NC_009439.1 PFAM: AFG1-family ATPase; AFG1 family ATPase 3620765 5106776 Pmen_3269 Pseudomonas mendocina ymp AFG1 family ATPase YP_001188754.1 3619656 R 399739 CDS YP_001188755.1 146308290 5106777 complement(3620771..3621655) 1 NC_009439.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3621655 5106777 Pmen_3270 Pseudomonas mendocina ymp nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001188755.1 3620771 R 399739 CDS YP_001188756.1 146308291 5106778 complement(3621652..3622242) 1 NC_009439.1 hypothetical protein 3622242 5106778 Pmen_3271 Pseudomonas mendocina ymp hypothetical protein YP_001188756.1 3621652 R 399739 CDS YP_001188757.1 146308292 5106779 3622355..3622756 1 NC_009439.1 PFAM: protein of unknown function DUF1486; hypothetical protein 3622756 5106779 Pmen_3272 Pseudomonas mendocina ymp hypothetical protein YP_001188757.1 3622355 D 399739 CDS YP_001188758.1 146308293 5106780 complement(3622962..3623264) 1 NC_009439.1 related to arylsulfate sulfotransferase involved in siderophore biosynthesis; hypothetical protein 3623264 5106780 Pmen_3273 Pseudomonas mendocina ymp hypothetical protein YP_001188758.1 3622962 R 399739 CDS YP_001188759.1 146308294 5106781 complement(3623358..3623939) 1 NC_009439.1 TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; PfpI family intracellular peptidase 3623939 5106781 Pmen_3274 Pseudomonas mendocina ymp PfpI family intracellular peptidase YP_001188759.1 3623358 R 399739 CDS YP_001188760.1 146308295 5106782 complement(3624049..3624657) 1 NC_009439.1 hypothetical protein 3624657 5106782 Pmen_3275 Pseudomonas mendocina ymp hypothetical protein YP_001188760.1 3624049 R 399739 CDS YP_001188761.1 146308296 5106783 complement(3624735..3625472) 1 NC_009439.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 3625472 5106783 Pmen_3276 Pseudomonas mendocina ymp enoyl-CoA hydratase YP_001188761.1 3624735 R 399739 CDS YP_001188762.1 146308297 5106784 complement(3625599..3626510) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 3626510 5106784 Pmen_3277 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001188762.1 3625599 R 399739 CDS YP_001188763.1 146308298 5106785 complement(3626624..3626941) 1 NC_009439.1 hypothetical protein 3626941 5106785 Pmen_3278 Pseudomonas mendocina ymp hypothetical protein YP_001188763.1 3626624 R 399739 CDS YP_001188764.1 146308299 5106786 complement(3627063..3627593) 1 NC_009439.1 hypothetical protein 3627593 5106786 Pmen_3279 Pseudomonas mendocina ymp hypothetical protein YP_001188764.1 3627063 R 399739 CDS YP_001188765.1 146308300 5106787 complement(3627572..3628480) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3628480 5106787 Pmen_3280 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001188765.1 3627572 R 399739 CDS YP_001188766.1 146308301 5106788 complement(3628477..3629262) 1 NC_009439.1 PFAM: class II aldolase/adducin family protein; aldolase II superfamily protein 3629262 5106788 Pmen_3281 Pseudomonas mendocina ymp aldolase II superfamily protein YP_001188766.1 3628477 R 399739 CDS YP_001188767.1 146308302 5106789 complement(3629417..3629884) 1 NC_009439.1 PFAM: protein of unknown function DUF985; hypothetical protein 3629884 5106789 Pmen_3282 Pseudomonas mendocina ymp hypothetical protein YP_001188767.1 3629417 R 399739 CDS YP_001188768.1 146308303 5106790 complement(3629886..3630335) 1 NC_009439.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 3630335 5106790 Pmen_3283 Pseudomonas mendocina ymp flavodoxin YP_001188768.1 3629886 R 399739 CDS YP_001188769.1 146308304 5106791 3630438..3630884 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; putative PAS/PAC sensor protein 3630884 5106791 Pmen_3284 Pseudomonas mendocina ymp putative PAS/PAC sensor protein YP_001188769.1 3630438 D 399739 CDS YP_001188770.1 146308305 5106792 3630950..3631558 1 NC_009439.1 hypothetical protein 3631558 5106792 Pmen_3285 Pseudomonas mendocina ymp hypothetical protein YP_001188770.1 3630950 D 399739 CDS YP_001188771.1 146308306 5106793 complement(3631576..3632541) 1 NC_009439.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 3632541 5106793 Pmen_3286 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001188771.1 3631576 R 399739 CDS YP_001188772.1 146308307 5106794 3632856..3633422 1 NC_009439.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 3633422 5106794 Pmen_3287 Pseudomonas mendocina ymp antibiotic biosynthesis monooxygenase YP_001188772.1 3632856 D 399739 CDS YP_001188773.1 146308308 5106795 3633738..3634448 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 3634448 5106795 Pmen_3288 Pseudomonas mendocina ymp short chain dehydrogenase YP_001188773.1 3633738 D 399739 CDS YP_001188774.1 146308309 5106796 3634471..3635031 1 NC_009439.1 PFAM: GTP cyclohydrolase I; GTP cyclohydrolase 3635031 5106796 Pmen_3289 Pseudomonas mendocina ymp GTP cyclohydrolase YP_001188774.1 3634471 D 399739 CDS YP_001188775.1 146308310 5106797 3635031..3635402 1 NC_009439.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 3635402 folX 5106797 folX Pseudomonas mendocina ymp D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase YP_001188775.1 3635031 D 399739 CDS YP_001188776.1 146308311 5106798 3635478..3635771 1 NC_009439.1 PFAM: protein of unknown function DUF1244; hypothetical protein 3635771 5106798 Pmen_3291 Pseudomonas mendocina ymp hypothetical protein YP_001188776.1 3635478 D 399739 CDS YP_001188777.1 146308312 5106799 3635768..3636109 1 NC_009439.1 hypothetical protein 3636109 5106799 Pmen_3292 Pseudomonas mendocina ymp hypothetical protein YP_001188777.1 3635768 D 399739 CDS YP_001188778.1 146308313 5106800 3636272..3636859 1 NC_009439.1 PFAM: protein of unknown function DUF1089; hypothetical protein 3636859 5106800 Pmen_3293 Pseudomonas mendocina ymp hypothetical protein YP_001188778.1 3636272 D 399739 CDS YP_001188779.1 146308314 5106801 complement(3636949..3637278) 1 NC_009439.1 PFAM: branched-chain amino acid transport; branched-chain amino acid transport 3637278 5106801 Pmen_3294 Pseudomonas mendocina ymp branched-chain amino acid transport YP_001188779.1 3636949 R 399739 CDS YP_001188780.1 146308315 5106802 complement(3637278..3638054) 1 NC_009439.1 PFAM: AzlC family protein; AzlC family protein 3638054 5106802 Pmen_3295 Pseudomonas mendocina ymp AzlC family protein YP_001188780.1 3637278 R 399739 CDS YP_001188781.1 146308316 5106803 3638170..3639582 1 NC_009439.1 PFAM: protein of unknown function DUF1111; hypothetical protein 3639582 5106803 Pmen_3296 Pseudomonas mendocina ymp hypothetical protein YP_001188781.1 3638170 D 399739 CDS YP_001188782.1 146308317 5106804 3639593..3640654 1 NC_009439.1 periplasmic lipoprotein-like protein 3640654 5106804 Pmen_3297 Pseudomonas mendocina ymp periplasmic lipoprotein-like protein YP_001188782.1 3639593 D 399739 CDS YP_001188783.1 146308318 5106805 3640657..3641760 1 NC_009439.1 PFAM: uncharacterised conserved protein UCP028101; hypothetical protein 3641760 5106805 Pmen_3298 Pseudomonas mendocina ymp hypothetical protein YP_001188783.1 3640657 D 399739 CDS YP_001188784.1 146308319 5106806 3642189..3643016 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 3643016 5106806 Pmen_3299 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001188784.1 3642189 D 399739 CDS YP_001188785.1 146308320 5106807 3643072..3643947 1 NC_009439.1 PFAM: SMP-30/Gluconolaconase/LRE domain protein; gluconolactonase 3643947 5106807 Pmen_3300 Pseudomonas mendocina ymp gluconolactonase YP_001188785.1 3643072 D 399739 CDS YP_001188786.1 146308321 5105774 3644026..3645000 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 3645000 5105774 Pmen_3301 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001188786.1 3644026 D 399739 CDS YP_001188787.1 146308322 5105775 3645060..3645587 1 NC_009439.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 3645587 5105775 Pmen_3302 Pseudomonas mendocina ymp tripartite ATP-independent periplasmic transporter DctQ YP_001188787.1 3645060 D 399739 CDS YP_001188788.1 146308323 5105776 3645587..3646867 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 3646867 5105776 Pmen_3303 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctM YP_001188788.1 3645587 D 399739 CDS YP_001188789.1 146308324 5105777 3646945..3647847 1 NC_009439.1 PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 3647847 5105777 Pmen_3304 Pseudomonas mendocina ymp hypothetical protein YP_001188789.1 3646945 D 399739 CDS YP_001188790.1 146308325 5105778 complement(3647939..3648694) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3648694 5105778 Pmen_3305 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188790.1 3647939 R 399739 CDS YP_001188791.1 146308326 5105779 3648795..3649670 1 NC_009439.1 PFAM: Aldose 1-epimerase; aldose 1-epimerase 3649670 5105779 Pmen_3306 Pseudomonas mendocina ymp aldose 1-epimerase YP_001188791.1 3648795 D 399739 CDS YP_001188792.1 146308327 5105780 3649914..3650126 1 NC_009439.1 hypothetical protein 3650126 5105780 Pmen_3307 Pseudomonas mendocina ymp hypothetical protein YP_001188792.1 3649914 D 399739 CDS YP_001188793.1 146308328 5105781 complement(3650351..3651835) 1 NC_009439.1 PFAM: protein of unknown function DUF853, NPT hydrolase putative; SMART: AAA ATPase; hypothetical protein 3651835 5105781 Pmen_3308 Pseudomonas mendocina ymp hypothetical protein YP_001188793.1 3650351 R 399739 CDS YP_001188794.1 146308329 5105782 3651991..3653868 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3653868 5105782 Pmen_3309 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001188794.1 3651991 D 399739 CDS YP_001188795.1 146308330 5105783 complement(3653910..3654089) 1 NC_009439.1 hypothetical protein 3654089 5105783 Pmen_3310 Pseudomonas mendocina ymp hypothetical protein YP_001188795.1 3653910 R 399739 CDS YP_001188796.1 146308331 5105784 complement(3654106..3654531) 1 NC_009439.1 PFAM: CBS domain containing protein; hypothetical protein 3654531 5105784 Pmen_3311 Pseudomonas mendocina ymp hypothetical protein YP_001188796.1 3654106 R 399739 CDS YP_001188797.1 146308332 5105785 complement(3654577..3655428) 1 NC_009439.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3655428 purU 5105785 purU Pseudomonas mendocina ymp formyltetrahydrofolate deformylase YP_001188797.1 3654577 R 399739 CDS YP_001188798.1 146308333 5105786 3655688..3656092 1 NC_009439.1 H-NS family protein MvaT 3656092 5105786 Pmen_3313 Pseudomonas mendocina ymp H-NS family protein MvaT YP_001188798.1 3655688 D 399739 CDS YP_001188799.1 146308334 5105787 complement(3656403..3657848) 1 NC_009439.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 3657848 sbcB 5105787 sbcB Pseudomonas mendocina ymp exonuclease I YP_001188799.1 3656403 R 399739 CDS YP_001188800.1 146308335 5105788 3658025..3658783 1 NC_009439.1 PFAM: protein of unknown function DUF975; hypothetical protein 3658783 5105788 Pmen_3315 Pseudomonas mendocina ymp hypothetical protein YP_001188800.1 3658025 D 399739 CDS YP_001188801.1 146308336 5105789 3658871..3659596 1 NC_009439.1 PFAM: RDD domain containing protein; RDD domain-containing protein 3659596 5105789 Pmen_3316 Pseudomonas mendocina ymp RDD domain-containing protein YP_001188801.1 3658871 D 399739 CDS YP_001188802.1 146308337 5105790 3659593..3660579 1 NC_009439.1 PFAM: protein of unknown function DUF95, transmembrane; hypothetical protein 3660579 5105790 Pmen_3317 Pseudomonas mendocina ymp hypothetical protein YP_001188802.1 3659593 D 399739 CDS YP_001188803.1 146308338 5105791 3660566..3662143 1 NC_009439.1 hypothetical protein 3662143 5105791 Pmen_3318 Pseudomonas mendocina ymp hypothetical protein YP_001188803.1 3660566 D 399739 CDS YP_001188804.1 146308339 5105792 3662140..3663321 1 NC_009439.1 hypothetical protein 3663321 5105792 Pmen_3319 Pseudomonas mendocina ymp hypothetical protein YP_001188804.1 3662140 D 399739 CDS YP_001188805.1 146308340 5105793 3663318..3664361 1 NC_009439.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase 3664361 5105793 Pmen_3320 Pseudomonas mendocina ymp ATPase YP_001188805.1 3663318 D 399739 CDS YP_001188806.1 146308341 5105794 3664358..3665689 1 NC_009439.1 PFAM: protein of unknown function DUF58; hypothetical protein 3665689 5105794 Pmen_3321 Pseudomonas mendocina ymp hypothetical protein YP_001188806.1 3664358 D 399739 CDS YP_001188807.1 146308342 5105795 3665897..3666478 1 NC_009439.1 PFAM: manganese and iron superoxide dismutase; superoxide dismutase 3666478 5105795 Pmen_3322 Pseudomonas mendocina ymp superoxide dismutase YP_001188807.1 3665897 D 399739 CDS YP_001188808.1 146308343 5105796 3666691..3668826 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 3668826 5105796 Pmen_3323 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001188808.1 3666691 D 399739 CDS YP_001188809.1 146308344 5105797 complement(3668988..3669893) 1 NC_009439.1 hypothetical protein 3669893 5105797 Pmen_3324 Pseudomonas mendocina ymp hypothetical protein YP_001188809.1 3668988 R 399739 CDS YP_001188810.1 146308345 5105798 complement(3669895..3670467) 1 NC_009439.1 PFAM: LemA family protein; LemA family protein 3670467 5105798 Pmen_3325 Pseudomonas mendocina ymp LemA family protein YP_001188810.1 3669895 R 399739 CDS YP_001188811.1 146308346 5105799 3670658..3671995 1 NC_009439.1 hypothetical protein 3671995 5105799 Pmen_3326 Pseudomonas mendocina ymp hypothetical protein YP_001188811.1 3670658 D 399739 CDS YP_001188812.1 146308347 5105800 complement(3672071..3672910) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 3672910 5105800 Pmen_3327 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001188812.1 3672071 R 399739 CDS YP_001188813.1 146308348 5105801 complement(3672913..3673482) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3673482 5105801 Pmen_3328 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001188813.1 3672913 R 399739 CDS YP_001188814.1 146308349 5107284 complement(3677212..3678030) 1 NC_009439.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 3678030 5107284 Pmen_3330 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001188814.1 3677212 R 399739 CDS YP_001188815.1 146308350 5105803 3678241..3679263 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 3679263 5105803 Pmen_3331 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001188815.1 3678241 D 399739 CDS YP_001188816.1 146308351 5105804 complement(3679314..3680789) 1 NC_009439.1 PFAM: protein of unknown function DUF195; hypothetical protein 3680789 5105804 Pmen_3332 Pseudomonas mendocina ymp hypothetical protein YP_001188816.1 3679314 R 399739 CDS YP_001188817.1 146308352 5105805 complement(3680843..3681154) 1 NC_009439.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 3681154 5105805 Pmen_3333 Pseudomonas mendocina ymp Sel1 domain-containing protein YP_001188817.1 3680843 R 399739 CDS YP_001188818.1 146308353 5105806 complement(3681520..3682272) 1 NC_009439.1 hypothetical protein 3682272 5105806 Pmen_3334 Pseudomonas mendocina ymp hypothetical protein YP_001188818.1 3681520 R 399739 CDS YP_001188819.1 146308354 5105807 complement(3682504..3682875) 1 NC_009439.1 XRE family transcriptional regulator 3682875 5105807 Pmen_3335 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001188819.1 3682504 R 399739 CDS YP_001188820.1 146308355 5105808 3682981..3685563 1 NC_009439.1 hypothetical protein 3685563 5105808 Pmen_3336 Pseudomonas mendocina ymp hypothetical protein YP_001188820.1 3682981 D 399739 CDS YP_001188821.1 146308356 5105809 3685568..3685759 1 NC_009439.1 hypothetical protein 3685759 5105809 Pmen_3337 Pseudomonas mendocina ymp hypothetical protein YP_001188821.1 3685568 D 399739 CDS YP_001188822.1 146308357 5105810 3685771..3686109 1 NC_009439.1 PFAM: uncharacterised conserved protein UCP025560; hypothetical protein 3686109 5105810 Pmen_3338 Pseudomonas mendocina ymp hypothetical protein YP_001188822.1 3685771 D 399739 CDS YP_001188823.1 146308358 5105811 complement(3686222..3686548) 1 NC_009439.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein 3686548 5105811 Pmen_3339 Pseudomonas mendocina ymp glutaredoxin-like protein YP_001188823.1 3686222 R 399739 CDS YP_001188824.1 146308359 5105812 complement(3686673..3688781) 1 NC_009439.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molydopterin dinucleotide-binding protein 3688781 5105812 Pmen_3340 Pseudomonas mendocina ymp molydopterin dinucleotide-binding protein YP_001188824.1 3686673 R 399739 CDS YP_001188825.1 146308360 5105813 complement(3688927..3689358) 1 NC_009439.1 hypothetical protein 3689358 5105813 Pmen_3341 Pseudomonas mendocina ymp hypothetical protein YP_001188825.1 3688927 R 399739 CDS YP_001188826.1 146308361 5105814 3689694..3690614 1 NC_009439.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 3690614 5105814 Pmen_3342 Pseudomonas mendocina ymp ornithine carbamoyltransferase YP_001188826.1 3689694 D 399739 CDS YP_001188827.1 146308362 5105815 3690611..3691717 1 NC_009439.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 3691717 5105815 Pmen_3343 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188827.1 3690611 D 399739 CDS YP_001188828.1 146308363 5105816 complement(3691719..3692525) 1 NC_009439.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 3692525 5105816 Pmen_3344 Pseudomonas mendocina ymp PhzF family phenazine biosynthesis protein YP_001188828.1 3691719 R 399739 CDS YP_001188829.1 146308364 5105817 complement(3692687..3694174) 1 NC_009439.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; glycerol kinase 3694174 5105817 Pmen_3345 Pseudomonas mendocina ymp glycerol kinase YP_001188829.1 3692687 R 399739 CDS YP_001188830.1 146308365 5105818 complement(3694231..3694701) 1 NC_009439.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybaK/ebsC protein 3694701 5105818 Pmen_3346 Pseudomonas mendocina ymp ybaK/ebsC protein YP_001188830.1 3694231 R 399739 CDS YP_001188831.1 146308366 5105819 3694796..3695554 1 NC_009439.1 PFAM: regulatory protein, DeoR; Bacterio-opsin activator, HTH domain protein; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator 3695554 5105819 Pmen_3347 Pseudomonas mendocina ymp DeoR family transcriptional regulator YP_001188831.1 3694796 D 399739 CDS YP_001188832.1 146308367 5105820 3695751..3697280 1 NC_009439.1 in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 3697280 glpD 5105820 glpD Pseudomonas mendocina ymp glycerol-3-phosphate dehydrogenase YP_001188832.1 3695751 D 399739 CDS YP_001188833.1 146308368 5105821 3697550..3698020 1 NC_009439.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; bacterioferritin 3698020 5105821 Pmen_3349 Pseudomonas mendocina ymp bacterioferritin YP_001188833.1 3697550 D 399739 CDS YP_001188834.1 146308369 5105822 complement(3698077..3701151) 1 NC_009439.1 PFAM: acriflavin resistance protein; acriflavin resistance protein 3701151 5105822 Pmen_3350 Pseudomonas mendocina ymp acriflavin resistance protein YP_001188834.1 3698077 R 399739 CDS YP_001188835.1 146308370 5105823 complement(3701158..3702261) 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3702261 5105823 Pmen_3351 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001188835.1 3701158 R 399739 CDS YP_001188836.1 146308371 5105824 3702353..3702988 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3702988 5105824 Pmen_3352 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188836.1 3702353 D 399739 CDS YP_001188837.1 146308372 5105825 complement(3703050..3703856) 1 NC_009439.1 PFAM: protein of unknown function DUF548; hypothetical protein 3703856 5105825 Pmen_3353 Pseudomonas mendocina ymp hypothetical protein YP_001188837.1 3703050 R 399739 CDS YP_001188838.1 146308373 5105826 complement(3704089..3704790) 1 NC_009439.1 PFAM: Extensin family protein; extensin family protein 3704790 5105826 Pmen_3354 Pseudomonas mendocina ymp extensin family protein YP_001188838.1 3704089 R 399739 CDS YP_001188839.1 146308374 5105827 complement(3704803..3705672) 1 NC_009439.1 PFAM: protein of unknown function DUF72; hypothetical protein 3705672 5105827 Pmen_3355 Pseudomonas mendocina ymp hypothetical protein YP_001188839.1 3704803 R 399739 CDS YP_001188840.1 146308375 5105828 complement(3705727..3706071) 1 NC_009439.1 hypothetical protein 3706071 5105828 Pmen_3356 Pseudomonas mendocina ymp hypothetical protein YP_001188840.1 3705727 R 399739 CDS YP_001188841.1 146308376 5105829 complement(3706185..3706868) 1 NC_009439.1 PFAM: peptidase M22, glycoprotease; peptidase M22, glycoprotease 3706868 5105829 Pmen_3357 Pseudomonas mendocina ymp peptidase M22, glycoprotease YP_001188841.1 3706185 R 399739 CDS YP_001188842.1 146308377 5105830 complement(3706984..3707757) 1 NC_009439.1 TIGRFAM: 5'-nucleotidase, lipoprotein e(P4) family; PFAM: acid phosphatase (Class B); 5'-nucleotidase 3707757 5105830 Pmen_3358 Pseudomonas mendocina ymp 5'-nucleotidase YP_001188842.1 3706984 R 399739 CDS YP_001188843.1 146308378 5105831 complement(3707937..3708584) 1 NC_009439.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 3708584 adk 5105831 adk Pseudomonas mendocina ymp adenylate kinase YP_001188843.1 3707937 R 399739 CDS YP_001188844.1 146308379 5105832 complement(3708806..3711442) 1 NC_009439.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 3711442 5105832 Pmen_3360 Pseudomonas mendocina ymp phosphoenolpyruvate carboxylase YP_001188844.1 3708806 R 399739 CDS YP_001188845.1 146308380 5105833 3711613..3711957 1 NC_009439.1 hypothetical protein 3711957 5105833 Pmen_3361 Pseudomonas mendocina ymp hypothetical protein YP_001188845.1 3711613 D 399739 CDS YP_001188846.1 146308381 5105834 3712390..3712803 1 NC_009439.1 hypothetical protein 3712803 5105834 Pmen_3362 Pseudomonas mendocina ymp hypothetical protein YP_001188846.1 3712390 D 399739 CDS YP_001188847.1 146308382 5105835 3712850..3713635 1 NC_009439.1 PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 3713635 5105835 Pmen_3363 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001188847.1 3712850 D 399739 CDS YP_001188848.1 146308383 5105836 complement(3713711..3714034) 1 NC_009439.1 hypothetical protein 3714034 5105836 Pmen_3364 Pseudomonas mendocina ymp hypothetical protein YP_001188848.1 3713711 R 399739 CDS YP_001188849.1 146308384 5105837 complement(3714031..3714924) 1 NC_009439.1 alpha/beta fold family hydrolase-like protein 3714924 5105837 Pmen_3365 Pseudomonas mendocina ymp alpha/beta fold family hydrolase-like protein YP_001188849.1 3714031 R 399739 CDS YP_001188850.1 146308385 5105838 complement(3714914..3715660) 1 NC_009439.1 PFAM: protein of unknown function DUF124; hypothetical protein 3715660 5105838 Pmen_3366 Pseudomonas mendocina ymp hypothetical protein YP_001188850.1 3714914 R 399739 CDS YP_001188851.1 146308386 5105839 complement(3715741..3717030) 1 NC_009439.1 PFAM: protein of unknown function DUF1704; hypothetical protein 3717030 5105839 Pmen_3367 Pseudomonas mendocina ymp hypothetical protein YP_001188851.1 3715741 R 399739 CDS YP_001188852.1 146308387 5105840 complement(3717039..3717590) 1 NC_009439.1 hypothetical protein 3717590 5105840 Pmen_3368 Pseudomonas mendocina ymp hypothetical protein YP_001188852.1 3717039 R 399739 CDS YP_001188853.1 146308388 5105841 complement(3717634..3718347) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3718347 5105841 Pmen_3369 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001188853.1 3717634 R 399739 CDS YP_001188854.1 146308389 5105842 complement(3718517..3720034) 1 NC_009439.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 3720034 lysS 5105842 lysS Pseudomonas mendocina ymp lysyl-tRNA synthetase YP_001188854.1 3718517 R 399739 CDS YP_001188855.1 146308390 5105843 complement(3720106..3721242) 1 NC_009439.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 2 3721242 5105843 Pmen_3371 Pseudomonas mendocina ymp peptide chain release factor 2 YP_001188855.1 3720106 R 399739 CDS YP_001188856.1 146308391 5105844 complement(3721380..3722315) 1 NC_009439.1 PFAM: Autotransporter beta- domain protein; autotransporter beta-domain-containing protein 3722315 5105844 Pmen_3372 Pseudomonas mendocina ymp autotransporter beta-domain-containing protein YP_001188856.1 3721380 R 399739 CDS YP_001188857.1 146308392 5105845 complement(3722395..3724056) 1 NC_009439.1 PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 3724056 5105845 Pmen_3373 Pseudomonas mendocina ymp glucose-methanol-choline oxidoreductase YP_001188857.1 3722395 R 399739 CDS YP_001188858.1 146308393 5105846 3724236..3726023 1 NC_009439.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; sulfate transporter 3726023 5105846 Pmen_3374 Pseudomonas mendocina ymp sulfate transporter YP_001188858.1 3724236 D 399739 CDS YP_001188859.1 146308394 5105847 complement(3726032..3726757) 1 NC_009439.1 PFAM: protein of unknown function DUF533; hypothetical protein 3726757 5105847 Pmen_3375 Pseudomonas mendocina ymp hypothetical protein YP_001188859.1 3726032 R 399739 CDS YP_001188860.1 146308395 5105848 complement(3726923..3728632) 1 NC_009439.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; exonuclease RecJ 3728632 5105848 Pmen_3376 Pseudomonas mendocina ymp exonuclease RecJ YP_001188860.1 3726923 R 399739 CDS YP_001188861.1 146308396 5105849 complement(3728680..3729324) 1 NC_009439.1 putative transcriptional regulator 3729324 5105849 Pmen_3377 Pseudomonas mendocina ymp putative transcriptional regulator YP_001188861.1 3728680 R 399739 CDS YP_001188862.1 146308397 5105850 3729417..3730166 1 NC_009439.1 PFAM: LamB/YcsF family protein; LamB/YcsF family protein 3730166 5105850 Pmen_3378 Pseudomonas mendocina ymp LamB/YcsF family protein YP_001188862.1 3729417 D 399739 CDS YP_001188863.1 146308398 5105851 3730163..3730867 1 NC_009439.1 PFAM: Allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 3730867 5105851 Pmen_3379 Pseudomonas mendocina ymp allophanate hydrolase subunit 1 YP_001188863.1 3730163 D 399739 CDS YP_001188864.1 146308399 5105852 3730864..3731778 1 NC_009439.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; urea amidolyase-like protein 3731778 5105852 Pmen_3380 Pseudomonas mendocina ymp urea amidolyase-like protein YP_001188864.1 3730864 D 399739 CDS YP_001188865.1 146308400 5105853 3731910..3733136 1 NC_009439.1 manganese transporter NRAMP 3733136 5105853 Pmen_3381 Pseudomonas mendocina ymp manganese transporter NRAMP YP_001188865.1 3731910 D 399739 CDS YP_001188866.1 146308401 5105854 complement(3733158..3733700) 1 NC_009439.1 PFAM: YaeQ family protein; YaeQ family protein 3733700 5105854 Pmen_3382 Pseudomonas mendocina ymp YaeQ family protein YP_001188866.1 3733158 R 399739 CDS YP_001188867.1 146308402 5105855 complement(3733761..3736472) 1 NC_009439.1 superfamily I DNA/RNA helicase 3736472 5105855 Pmen_3383 Pseudomonas mendocina ymp superfamily I DNA/RNA helicase YP_001188867.1 3733761 R 399739 CDS YP_001188868.1 146308403 5105856 complement(3736472..3737161) 1 NC_009439.1 phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein 3737161 5105856 Pmen_3384 Pseudomonas mendocina ymp phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase-like protein YP_001188868.1 3736472 R 399739 CDS YP_001188869.1 146308404 5105857 complement(3737175..3737726) 1 NC_009439.1 PFAM: Rhomboid family protein; rhomboid family protein 3737726 5105857 Pmen_3385 Pseudomonas mendocina ymp rhomboid family protein YP_001188869.1 3737175 R 399739 CDS YP_001188870.1 146308405 5105858 complement(3737723..3742957) 1 NC_009439.1 hypothetical protein 3742957 5105858 Pmen_3386 Pseudomonas mendocina ymp hypothetical protein YP_001188870.1 3737723 R 399739 CDS YP_001188871.1 146308406 5105859 complement(3743134..3745179) 1 NC_009439.1 hypothetical protein 3745179 5105859 Pmen_3387 Pseudomonas mendocina ymp hypothetical protein YP_001188871.1 3743134 R 399739 CDS YP_001188872.1 146308407 5105860 complement(3745271..3745912) 1 NC_009439.1 hypothetical protein 3745912 5105860 Pmen_3388 Pseudomonas mendocina ymp hypothetical protein YP_001188872.1 3745271 R 399739 CDS YP_001188873.1 146308408 5105861 complement(3745973..3746668) 1 NC_009439.1 PFAM: PspA/IM30 family protein; phage shock protein A, PspA 3746668 5105861 Pmen_3389 Pseudomonas mendocina ymp phage shock protein A, PspA YP_001188873.1 3745973 R 399739 CDS YP_001188874.1 146308409 5105862 complement(3746682..3747302) 1 NC_009439.1 hypothetical protein 3747302 5105862 Pmen_3390 Pseudomonas mendocina ymp hypothetical protein YP_001188874.1 3746682 R 399739 CDS YP_001188875.1 146308410 5105863 3747638..3748837 1 NC_009439.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 3748837 5105863 Pmen_3391 Pseudomonas mendocina ymp L-carnitine dehydratase/bile acid-inducible protein F YP_001188875.1 3747638 D 399739 CDS YP_001188876.1 146308411 5105864 3748839..3749090 1 NC_009439.1 hypothetical protein 3749090 5105864 Pmen_3392 Pseudomonas mendocina ymp hypothetical protein YP_001188876.1 3748839 D 399739 CDS YP_001188877.1 146308412 5105865 complement(3749140..3750549) 1 NC_009439.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 3750549 5105865 Pmen_3393 Pseudomonas mendocina ymp threonine synthase YP_001188877.1 3749140 R 399739 CDS YP_001188878.1 146308413 5105866 complement(3750607..3751911) 1 NC_009439.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 3751911 5105866 Pmen_3394 Pseudomonas mendocina ymp homoserine dehydrogenase YP_001188878.1 3750607 R 399739 CDS YP_001188879.1 146308414 5105867 complement(3752160..3752885) 1 NC_009439.1 protein-disulfide isomerase-like protein 3752885 5105867 Pmen_3395 Pseudomonas mendocina ymp protein-disulfide isomerase-like protein YP_001188879.1 3752160 R 399739 CDS YP_001188880.1 146308415 5105868 complement(3752977..3753873) 1 NC_009439.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3753873 xerD 5105868 xerD Pseudomonas mendocina ymp site-specific tyrosine recombinase XerD YP_001188880.1 3752977 R 399739 CDS YP_001188881.1 146308416 5105869 3754091..3754771 1 NC_009439.1 hypothetical protein 3754771 5105869 Pmen_3397 Pseudomonas mendocina ymp hypothetical protein YP_001188881.1 3754091 D 399739 CDS YP_001188882.1 146308417 5105870 complement(3754860..3755210) 1 NC_009439.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3755210 rplS 5105870 rplS Pseudomonas mendocina ymp 50S ribosomal protein L19 YP_001188882.1 3754860 R 399739 CDS YP_001188883.1 146308418 5105871 complement(3755253..3755996) 1 NC_009439.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 3755996 trmD 5105871 trmD Pseudomonas mendocina ymp tRNA (guanine-N(1)-)-methyltransferase YP_001188883.1 3755253 R 399739 CDS YP_001188884.1 146308419 5105872 complement(3756002..3756538) 1 NC_009439.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3756538 rimM 5105872 rimM Pseudomonas mendocina ymp 16S rRNA-processing protein RimM YP_001188884.1 3756002 R 399739 CDS YP_001188885.1 146308420 5105873 complement(3756548..3756799) 1 NC_009439.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3756799 rpsP 5105873 rpsP Pseudomonas mendocina ymp 30S ribosomal protein S16 YP_001188885.1 3756548 R 399739 CDS YP_001188886.1 146308421 5105874 complement(3756942..3758318) 1 NC_009439.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54) 3758318 5105874 Pmen_3402 Pseudomonas mendocina ymp signal recognition particle subunit FFH/SRP54 (srp54) YP_001188886.1 3756942 R 399739 CDS YP_001188887.1 146308422 5105875 3758476..3759276 1 NC_009439.1 PFAM: cytochrome c assembly protein; cytochrome c assembly protein 3759276 5105875 Pmen_3403 Pseudomonas mendocina ymp cytochrome c assembly protein YP_001188887.1 3758476 D 399739 CDS YP_001188888.1 146308423 5105876 3759287..3760573 1 NC_009439.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein 3760573 5105876 Pmen_3404 Pseudomonas mendocina ymp hypothetical protein YP_001188888.1 3759287 D 399739 CDS YP_001188889.1 146308424 5105877 complement(3760545..3761279) 1 NC_009439.1 lysophospholipase L1 and related esterase-like protein 3761279 5105877 Pmen_3405 Pseudomonas mendocina ymp lysophospholipase L1 and related esterase-like protein YP_001188889.1 3760545 R 399739 CDS YP_001188890.1 146308425 5105878 complement(3761276..3762457) 1 NC_009439.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 3762457 purT 5105878 purT Pseudomonas mendocina ymp phosphoribosylglycinamide formyltransferase 2 YP_001188890.1 3761276 R 399739 CDS YP_001188891.1 146308426 5105879 complement(3762479..3762679) 1 NC_009439.1 PFAM: protein of unknown function DUF1289; hypothetical protein 3762679 5105879 Pmen_3407 Pseudomonas mendocina ymp hypothetical protein YP_001188891.1 3762479 R 399739 CDS YP_001188892.1 146308427 5105880 complement(3762672..3763196) 1 NC_009439.1 carbonic anhydrase 3763196 5105880 Pmen_3408 Pseudomonas mendocina ymp carbonic anhydrase YP_001188892.1 3762672 R 399739 CDS YP_001188893.1 146308428 5105881 complement(3763208..3763813) 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 3763813 5105881 Pmen_3409 Pseudomonas mendocina ymp NUDIX hydrolase YP_001188893.1 3763208 R 399739 CDS YP_001188894.1 146308429 5105882 3763965..3764519 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 3764519 5105882 Pmen_3410 Pseudomonas mendocina ymp NUDIX hydrolase YP_001188894.1 3763965 D 399739 CDS YP_001188895.1 146308430 5105883 3764541..3765044 1 NC_009439.1 hypothetical protein 3765044 5105883 Pmen_3411 Pseudomonas mendocina ymp hypothetical protein YP_001188895.1 3764541 D 399739 CDS YP_001188896.1 146308431 5105884 complement(3765091..3765408) 1 NC_009439.1 hypothetical protein 3765408 5105884 Pmen_3412 Pseudomonas mendocina ymp hypothetical protein YP_001188896.1 3765091 R 399739 CDS YP_001188897.1 146308432 5105885 complement(3765564..3765833) 1 NC_009439.1 hypothetical protein 3765833 5105885 Pmen_3413 Pseudomonas mendocina ymp hypothetical protein YP_001188897.1 3765564 R 399739 CDS YP_001188898.1 146308433 5105886 complement(3766220..3770116) 1 NC_009439.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 3770116 5105886 Pmen_3414 Pseudomonas mendocina ymp phosphoribosylformylglycinamidine synthase YP_001188898.1 3766220 R 399739 CDS YP_001188899.1 146308434 5105887 3770282..3771748 1 NC_009439.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 3771748 5105887 Pmen_3415 Pseudomonas mendocina ymp putative transglycosylase YP_001188899.1 3770282 D 399739 CDS YP_001188900.1 146308435 5105888 complement(3771751..3772218) 1 NC_009439.1 hypothetical protein 3772218 5105888 Pmen_3416 Pseudomonas mendocina ymp hypothetical protein YP_001188900.1 3771751 R 399739 CDS YP_001188901.1 146308436 5105889 complement(3772239..3772715) 1 NC_009439.1 PFAM: CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 3772715 5105889 Pmen_3417 Pseudomonas mendocina ymp zinc-binding CMP/dCMP deaminase YP_001188901.1 3772239 R 399739 CDS YP_001188902.1 146308437 5105890 complement(3772769..3774139) 1 NC_009439.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; multicopper oxidase, type 3 3774139 5105890 Pmen_3418 Pseudomonas mendocina ymp multicopper oxidase, type 3 YP_001188902.1 3772769 R 399739 CDS YP_001188903.1 146308438 5105891 3774319..3774789 1 NC_009439.1 hypothetical protein 3774789 5105891 Pmen_3419 Pseudomonas mendocina ymp hypothetical protein YP_001188903.1 3774319 D 399739 CDS YP_001188904.1 146308439 5105892 3774792..3775307 1 NC_009439.1 hypothetical protein 3775307 5105892 Pmen_3420 Pseudomonas mendocina ymp hypothetical protein YP_001188904.1 3774792 D 399739 CDS YP_001188905.1 146308440 5105893 complement(3775369..3775995) 1 NC_009439.1 hypothetical protein 3775995 5105893 Pmen_3421 Pseudomonas mendocina ymp hypothetical protein YP_001188905.1 3775369 R 399739 CDS YP_001188906.1 146308441 5105894 3776776..3777084 1 NC_009439.1 hypothetical protein 3777084 5105894 Pmen_3422 Pseudomonas mendocina ymp hypothetical protein YP_001188906.1 3776776 D 399739 CDS YP_001188907.1 146308442 5105895 3777062..3777343 1 NC_009439.1 hypothetical protein 3777343 5105895 Pmen_3423 Pseudomonas mendocina ymp hypothetical protein YP_001188907.1 3777062 D 399739 CDS YP_001188908.1 146308443 5105896 3777612..3780098 1 NC_009439.1 hypothetical protein 3780098 5105896 Pmen_3424 Pseudomonas mendocina ymp hypothetical protein YP_001188908.1 3777612 D 399739 CDS YP_001188909.1 146308444 5105897 3780095..3781390 1 NC_009439.1 hypothetical protein 3781390 5105897 Pmen_3425 Pseudomonas mendocina ymp hypothetical protein YP_001188909.1 3780095 D 399739 CDS YP_001188910.1 146308445 5105898 3781365..3783581 1 NC_009439.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 3783581 5105898 Pmen_3426 Pseudomonas mendocina ymp DEAD/DEAH box helicase YP_001188910.1 3781365 D 399739 CDS YP_001188911.1 146308446 5105899 3783970..3784470 1 NC_009439.1 hypothetical protein 3784470 5105899 Pmen_3427 Pseudomonas mendocina ymp hypothetical protein YP_001188911.1 3783970 D 399739 CDS YP_001188912.1 146308447 5105900 3784524..3784871 1 NC_009439.1 hypothetical protein 3784871 5105900 Pmen_3428 Pseudomonas mendocina ymp hypothetical protein YP_001188912.1 3784524 D 399739 CDS YP_001188913.1 146308448 5105901 3785026..3786327 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 3786327 5105901 Pmen_3429 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001188913.1 3785026 D 399739 CDS YP_001188914.1 146308449 5105902 complement(3786564..3787217) 1 NC_009439.1 PFAM: protein of unknown function UPF0153; hypothetical protein 3787217 5105902 Pmen_3430 Pseudomonas mendocina ymp hypothetical protein YP_001188914.1 3786564 R 399739 CDS YP_001188915.1 146308450 5105903 complement(3787388..3789169) 1 NC_009439.1 hypothetical protein 3789169 5105903 Pmen_3431 Pseudomonas mendocina ymp hypothetical protein YP_001188915.1 3787388 R 399739 CDS YP_001188916.1 146308451 5107285 3791083..3791721 1 NC_009439.1 PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 3791721 5107285 Pmen_3433 Pseudomonas mendocina ymp cobyrinic acid a,c-diamide synthase YP_001188916.1 3791083 D 399739 CDS YP_001188917.1 146308452 5105905 3791718..3791930 1 NC_009439.1 hypothetical protein 3791930 5105905 Pmen_3434 Pseudomonas mendocina ymp hypothetical protein YP_001188917.1 3791718 D 399739 CDS YP_001188918.1 146308453 5107286 complement(3792928..3794508) 1 NC_009439.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 3794508 5107286 Pmen_3436 Pseudomonas mendocina ymp choline/carnitine/betaine transporter YP_001188918.1 3792928 R 399739 CDS YP_001188919.1 146308454 5105907 3794874..3795464 1 NC_009439.1 PFAM: protein of unknown function DUF1185; hypothetical protein 3795464 5105907 Pmen_3437 Pseudomonas mendocina ymp hypothetical protein YP_001188919.1 3794874 D 399739 CDS YP_001188920.1 146308455 5105908 3795493..3796326 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; Ndr family protein; 3-oxoadipate enol-lactonase 3796326 5105908 Pmen_3438 Pseudomonas mendocina ymp 3-oxoadipate enol-lactonase YP_001188920.1 3795493 D 399739 CDS YP_001188921.1 146308456 5105909 3796323..3797804 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 3797804 5105909 Pmen_3439 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001188921.1 3796323 D 399739 CDS YP_001188922.1 146308457 5105910 3797817..3798302 1 NC_009439.1 PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 3798302 5105910 Pmen_3440 Pseudomonas mendocina ymp flavin reductase domain-containing protein YP_001188922.1 3797817 D 399739 CDS YP_001188923.1 146308458 5105911 3798530..3799969 1 NC_009439.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate semialdehyde dehydrogenase 3799969 5105911 Pmen_3441 Pseudomonas mendocina ymp succinate semialdehyde dehydrogenase YP_001188923.1 3798530 D 399739 CDS YP_001188924.1 146308459 5105912 3799988..3800371 1 NC_009439.1 PFAM: Carboxymuconolactone decarboxylase; 4-carboxymuconolactone decarboxylase 3800371 5105912 Pmen_3442 Pseudomonas mendocina ymp 4-carboxymuconolactone decarboxylase YP_001188924.1 3799988 D 399739 CDS YP_001188925.1 146308460 5105913 3800404..3801204 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 3801204 5105913 Pmen_3443 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001188925.1 3800404 D 399739 CDS YP_001188926.1 146308461 5105914 3801209..3801772 1 NC_009439.1 PFAM: NUDIX hydrolase; NUDIX hydrolase 3801772 5105914 Pmen_3444 Pseudomonas mendocina ymp NUDIX hydrolase YP_001188926.1 3801209 D 399739 CDS YP_001188927.1 146308462 5105915 complement(3801908..3802240) 1 NC_009439.1 PFAM: protein of unknown function DUF1330; hypothetical protein 3802240 5105915 Pmen_3445 Pseudomonas mendocina ymp hypothetical protein YP_001188927.1 3801908 R 399739 CDS YP_001188928.1 146308463 5105916 3802276..3803385 1 NC_009439.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 3803385 5105916 Pmen_3446 Pseudomonas mendocina ymp bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001188928.1 3802276 D 399739 CDS YP_001188929.1 146308464 5105917 3803753..3804778 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 3804778 5105917 Pmen_3447 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001188929.1 3803753 D 399739 CDS YP_001188930.1 146308465 5105918 3804775..3805671 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3805671 5105918 Pmen_3448 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001188930.1 3804775 D 399739 CDS YP_001188931.1 146308466 5105919 3805675..3806484 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3806484 5105919 Pmen_3449 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001188931.1 3805675 D 399739 CDS YP_001188932.1 146308467 5105920 3806502..3807656 1 NC_009439.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 3807656 5105920 Pmen_3450 Pseudomonas mendocina ymp ABC transporter-like protein YP_001188932.1 3806502 D 399739 CDS YP_001188933.1 146308468 5105921 3807947..3808432 1 NC_009439.1 PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 3808432 5105921 Pmen_3451 Pseudomonas mendocina ymp flavin reductase domain-containing protein YP_001188933.1 3807947 D 399739 CDS YP_001188934.1 146308469 5105922 complement(3808639..3809304) 1 NC_009439.1 PFAM: regulatory protein, LuxR; PAS fold-3 domain protein; putative PAS/PAC sensor protein 3809304 5105922 Pmen_3452 Pseudomonas mendocina ymp putative PAS/PAC sensor protein YP_001188934.1 3808639 R 399739 CDS YP_001188935.1 146308470 5105923 3809497..3810024 1 NC_009439.1 hypothetical protein 3810024 5105923 Pmen_3453 Pseudomonas mendocina ymp hypothetical protein YP_001188935.1 3809497 D 399739 CDS YP_001188936.1 146308471 5105924 3810021..3810950 1 NC_009439.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin 3810950 5105924 Pmen_3454 Pseudomonas mendocina ymp ferredoxin YP_001188936.1 3810021 D 399739 CDS YP_001188937.1 146308472 5105925 3810967..3811983 1 NC_009439.1 hypothetical protein 3811983 5105925 Pmen_3455 Pseudomonas mendocina ymp hypothetical protein YP_001188937.1 3810967 D 399739 CDS YP_001188938.1 146308473 5105926 3812011..3813141 1 NC_009439.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage T protein (aminomethyl transferase) 3813141 5105926 Pmen_3456 Pseudomonas mendocina ymp glycine cleavage T protein (aminomethyl transferase) YP_001188938.1 3812011 D 399739 CDS YP_001188939.1 146308474 5105927 3813175..3814029 1 NC_009439.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; formyltetrahydrofolate deformylase 3814029 5105927 Pmen_3457 Pseudomonas mendocina ymp formyltetrahydrofolate deformylase YP_001188939.1 3813175 D 399739 CDS YP_001188940.1 146308475 5105928 3814026..3814937 1 NC_009439.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3814937 5105928 Pmen_3458 Pseudomonas mendocina ymp bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001188940.1 3814026 D 399739 CDS YP_001188941.1 146308476 5105929 3814934..3816304 1 NC_009439.1 PFAM: flavin-containing monooxygenase FMO; flavin-containing monooxygenase 3816304 5105929 Pmen_3459 Pseudomonas mendocina ymp flavin-containing monooxygenase YP_001188941.1 3814934 D 399739 CDS YP_001188942.1 146308477 5105930 3816415..3818760 1 NC_009439.1 PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage T protein (aminomethyl transferase) 3818760 5105930 Pmen_3460 Pseudomonas mendocina ymp glycine cleavage T protein (aminomethyl transferase) YP_001188942.1 3816415 D 399739 CDS YP_001188943.1 146308478 5105931 3819036..3820022 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; methyl-accepting chemotaxis sensory transducer 3820022 5105931 Pmen_3461 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001188943.1 3819036 D 399739 CDS YP_001188944.1 146308479 5105932 3820271..3821644 1 NC_009439.1 PFAM: Rh family protein/ammonium transporter; Rh family protein/ammonium transporter 3821644 5105932 Pmen_3462 Pseudomonas mendocina ymp Rh family protein/ammonium transporter YP_001188944.1 3820271 D 399739 CDS YP_001188945.1 146308480 5105933 3821700..3821879 1 NC_009439.1 hypothetical protein 3821879 5105933 Pmen_3463 Pseudomonas mendocina ymp hypothetical protein YP_001188945.1 3821700 D 399739 CDS YP_001188946.1 146308481 5105934 complement(3822258..3822608) 1 NC_009439.1 PFAM: small multidrug resistance protein; small multidrug resistance protein 3822608 5105934 Pmen_3464 Pseudomonas mendocina ymp small multidrug resistance protein YP_001188946.1 3822258 R 399739 CDS YP_001188947.1 146308482 5105935 complement(3822671..3823993) 1 NC_009439.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; dihydroorotate dehydrogenase; ferredoxin-dependent glutamate synthase; glutamate synthase (NADPH) GltB2 subunit 3823993 5105935 Pmen_3465 Pseudomonas mendocina ymp glutamate synthase (NADPH) GltB2 subunit YP_001188947.1 3822671 R 399739 CDS YP_001188948.1 146308483 5105936 complement(3824111..3824785) 1 NC_009439.1 PFAM: glutamate synthase, alpha subunit domain protein; glutamate synthase (NADPH) GltB3 subunit 3824785 5105936 Pmen_3466 Pseudomonas mendocina ymp glutamate synthase (NADPH) GltB3 subunit YP_001188948.1 3824111 R 399739 CDS YP_001188949.1 146308484 5105937 complement(3824797..3825696) 1 NC_009439.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase (NADPH) GltB1 subunit 3825696 5105937 Pmen_3467 Pseudomonas mendocina ymp glutamate synthase (NADPH) GltB1 subunit YP_001188949.1 3824797 R 399739 CDS YP_001188950.1 146308485 5105938 complement(3825736..3827070) 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; L-glutamine synthetase 3827070 5105938 Pmen_3468 Pseudomonas mendocina ymp L-glutamine synthetase YP_001188950.1 3825736 R 399739 CDS YP_001188951.1 146308486 5105939 3827427..3828020 1 NC_009439.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 3828020 5105939 Pmen_3469 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001188951.1 3827427 D 399739 CDS YP_001188952.1 146308487 5105940 3828336..3829202 1 NC_009439.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; formyltetrahydrofolate deformylase 3829202 5105940 Pmen_3470 Pseudomonas mendocina ymp formyltetrahydrofolate deformylase YP_001188952.1 3828336 D 399739 CDS YP_001188953.1 146308488 5105941 3829199..3830122 1 NC_009439.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 3830122 5105941 Pmen_3471 Pseudomonas mendocina ymp bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001188953.1 3829199 D 399739 CDS YP_001188954.1 146308489 5105942 3830104..3831345 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 3831345 5105942 Pmen_3472 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001188954.1 3830104 D 399739 CDS YP_001188955.1 146308490 5105943 3831357..3831659 1 NC_009439.1 PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; sarcosine oxidase subunit delta 3831659 5105943 Pmen_3473 Pseudomonas mendocina ymp sarcosine oxidase subunit delta YP_001188955.1 3831357 D 399739 CDS YP_001188956.1 146308491 5105944 3831656..3834553 1 NC_009439.1 PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Glycine cleavage T-protein, C-terminal barrel; aminomethyltransferase 3834553 5105944 Pmen_3474 Pseudomonas mendocina ymp aminomethyltransferase YP_001188956.1 3831656 D 399739 CDS YP_001188957.1 146308492 5105945 3834557..3835135 1 NC_009439.1 hypothetical protein 3835135 5105945 Pmen_3475 Pseudomonas mendocina ymp hypothetical protein YP_001188957.1 3834557 D 399739 CDS YP_001188958.1 146308493 5105946 3835310..3836095 1 NC_009439.1 PFAM: regulatory protein, IclR; Helix-turn-helix, type 11 domain protein; IclR family transcriptional regulator 3836095 5105946 Pmen_3476 Pseudomonas mendocina ymp IclR family transcriptional regulator YP_001188958.1 3835310 D 399739 CDS YP_001188959.1 146308494 5107287 3838257..3839300 1 NC_009439.1 PFAM: luciferase family protein; luciferase family protein 3839300 5107287 Pmen_3478 Pseudomonas mendocina ymp luciferase family protein YP_001188959.1 3838257 D 399739 CDS YP_001188960.1 146308495 5105948 3839625..3840338 1 NC_009439.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 3840338 5105948 Pmen_3479 Pseudomonas mendocina ymp isochorismatase hydrolase YP_001188960.1 3839625 D 399739 CDS YP_001188961.1 146308496 5107288 3842143..3842526 1 NC_009439.1 PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 3842526 5107288 Pmen_3481 Pseudomonas mendocina ymp phage transcriptional regulator AlpA YP_001188961.1 3842143 D 399739 CDS YP_001188962.1 146308497 5105950 complement(3842541..3843065) 1 NC_009439.1 PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 3843065 5105950 Pmen_3482 Pseudomonas mendocina ymp phage transcriptional regulator AlpA YP_001188962.1 3842541 R 399739 CDS YP_001188963.1 146308498 5105951 complement(3843070..3843345) 1 NC_009439.1 hypothetical protein 3843345 5105951 Pmen_3483 Pseudomonas mendocina ymp hypothetical protein YP_001188963.1 3843070 R 399739 CDS YP_001188964.1 146308499 5105952 complement(3843406..3844662) 1 NC_009439.1 PFAM: phage integrase family protein; phage integrase family protein 3844662 5105952 Pmen_3484 Pseudomonas mendocina ymp phage integrase family protein YP_001188964.1 3843406 R 399739 CDS YP_001188965.1 146308500 5105953 complement(3844964..3846541) 1 NC_009439.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 3846541 guaA 5105953 guaA Pseudomonas mendocina ymp GMP synthase YP_001188965.1 3844964 R 399739 CDS YP_001188966.1 146308501 5105954 complement(3846750..3848219) 1 NC_009439.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 3848219 5105954 Pmen_3486 Pseudomonas mendocina ymp inosine 5'-monophosphate dehydrogenase YP_001188966.1 3846750 R 399739 CDS YP_001188967.1 146308502 5105955 complement(3848430..3848984) 1 NC_009439.1 hypothetical protein 3848984 5105955 Pmen_3487 Pseudomonas mendocina ymp hypothetical protein YP_001188967.1 3848430 R 399739 CDS YP_001188968.1 146308503 5105956 complement(3849041..3849508) 1 NC_009439.1 PFAM: transmembrane pair domain protein; transmembrane pair domain-containing protein 3849508 5105956 Pmen_3488 Pseudomonas mendocina ymp transmembrane pair domain-containing protein YP_001188968.1 3849041 R 399739 CDS YP_001188969.1 146308504 5105957 3849597..3850472 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3850472 5105957 Pmen_3489 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001188969.1 3849597 D 399739 CDS YP_001188970.1 146308505 5105958 3850465..3851895 1 NC_009439.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 3851895 xseA 5105958 xseA Pseudomonas mendocina ymp exodeoxyribonuclease VII large subunit YP_001188970.1 3850465 D 399739 CDS YP_001188971.1 146308506 5105959 3851902..3852744 1 NC_009439.1 PFAM: peptidase M23B; peptidase M23B 3852744 5105959 Pmen_3491 Pseudomonas mendocina ymp peptidase M23B YP_001188971.1 3851902 D 399739 CDS YP_001188972.1 146308507 5105960 3853029..3854699 1 NC_009439.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase 3854699 5105960 Pmen_3492 Pseudomonas mendocina ymp 2-isopropylmalate synthase YP_001188972.1 3853029 D 399739 CDS YP_001188973.1 146308508 5105961 complement(3854938..3855399) 1 NC_009439.1 hypothetical protein 3855399 5105961 Pmen_3493 Pseudomonas mendocina ymp hypothetical protein YP_001188973.1 3854938 R 399739 CDS YP_001188974.1 146308509 5105962 complement(3855411..3856193) 1 NC_009439.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3856193 5105962 Pmen_3494 Pseudomonas mendocina ymp nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001188974.1 3855411 R 399739 CDS YP_001188975.1 146308510 5105963 complement(3856226..3857374) 1 NC_009439.1 catalyzes the transfer of an amino moiety; putative aminotransferase 3857374 5105963 Pmen_3495 Pseudomonas mendocina ymp putative aminotransferase YP_001188975.1 3856226 R 399739 CDS YP_001188976.1 146308511 5105964 complement(3857513..3858991) 1 NC_009439.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 3858991 engA 5105964 engA Pseudomonas mendocina ymp GTP-binding protein EngA YP_001188976.1 3857513 R 399739 CDS YP_001188977.1 146308512 5105965 complement(3859090..3860229) 1 NC_009439.1 PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3860229 5105965 Pmen_3497 Pseudomonas mendocina ymp Pyrrolo-quinoline quinone YP_001188977.1 3859090 R 399739 CDS YP_001188978.1 146308513 5105966 complement(3860234..3860872) 1 NC_009439.1 hypothetical protein 3860872 5105966 Pmen_3498 Pseudomonas mendocina ymp hypothetical protein YP_001188978.1 3860234 R 399739 CDS YP_001188979.1 146308514 5105967 complement(3860905..3862191) 1 NC_009439.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 3862191 hisS 5105967 hisS Pseudomonas mendocina ymp histidyl-tRNA synthetase YP_001188979.1 3860905 R 399739 CDS YP_001188980.1 146308515 5105968 complement(3862215..3863327) 1 NC_009439.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 3863327 ispG 5105968 ispG Pseudomonas mendocina ymp 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001188980.1 3862215 R 399739 CDS YP_001188981.1 146308516 5105969 complement(3863331..3864320) 1 NC_009439.1 SMART: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 3864320 5105969 Pmen_3501 Pseudomonas mendocina ymp helix-turn-helix domain-containing protein YP_001188981.1 3863331 R 399739 CDS YP_001188982.1 146308517 5105970 complement(3864317..3865078) 1 NC_009439.1 TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 3865078 5105970 Pmen_3502 Pseudomonas mendocina ymp type IV pilus biogenesis/stability protein PilW YP_001188982.1 3864317 R 399739 CDS YP_001188983.1 146308518 5105971 complement(3865092..3866240) 1 NC_009439.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM protein 3866240 5105971 Pmen_3503 Pseudomonas mendocina ymp radical SAM protein YP_001188983.1 3865092 R 399739 CDS YP_001188984.1 146308519 5105972 complement(3866267..3866698) 1 NC_009439.1 PFAM: nucleoside diphosphate kinase; nucleoside diphosphate kinase 3866698 5105972 Pmen_3504 Pseudomonas mendocina ymp nucleoside diphosphate kinase YP_001188984.1 3866267 R 399739 CDS YP_001188985.1 146308520 5105973 complement(3866856..3867053) 1 NC_009439.1 PFAM: protein of unknown function DUF528; hypothetical protein 3867053 5105973 Pmen_3505 Pseudomonas mendocina ymp hypothetical protein YP_001188985.1 3866856 R 399739 CDS YP_001188986.1 146308521 5105974 complement(3867070..3867411) 1 NC_009439.1 TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; ferredoxin, 2Fe-2S type, ISC system 3867411 5105974 Pmen_3506 Pseudomonas mendocina ymp ferredoxin, 2Fe-2S type, ISC system YP_001188986.1 3867070 R 399739 CDS YP_001188987.1 146308522 5105975 complement(3867415..3869280) 1 NC_009439.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 3869280 hscA 5105975 hscA Pseudomonas mendocina ymp chaperone protein HscA YP_001188987.1 3867415 R 399739 CDS YP_001188988.1 146308523 5105976 complement(3869326..3869847) 1 NC_009439.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 3869847 hscB 5105976 hscB Pseudomonas mendocina ymp co-chaperone HscB YP_001188988.1 3869326 R 399739 CDS YP_001188989.1 146308524 5105977 complement(3869857..3870180) 1 NC_009439.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly protein IscA 3870180 5105977 Pmen_3509 Pseudomonas mendocina ymp iron-sulfur cluster assembly protein IscA YP_001188989.1 3869857 R 399739 CDS YP_001188990.1 146308525 5105978 complement(3870194..3870580) 1 NC_009439.1 TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; scaffold protein 3870580 5105978 Pmen_3510 Pseudomonas mendocina ymp scaffold protein YP_001188990.1 3870194 R 399739 CDS YP_001188991.1 146308526 5105979 complement(3870624..3871838) 1 NC_009439.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 3871838 5105979 Pmen_3511 Pseudomonas mendocina ymp cysteine desulfurase YP_001188991.1 3870624 R 399739 CDS YP_001188992.1 146308527 5105980 complement(3871869..3872366) 1 NC_009439.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 3872366 5105980 Pmen_3512 Pseudomonas mendocina ymp BadM/Rrf2 family transcriptional regulator YP_001188992.1 3871869 R 399739 CDS YP_001188993.1 146308528 5105981 complement(3872503..3873288) 1 NC_009439.1 TIGRFAM: serine O-acetyltransferase; serine O-acetyltransferase 3873288 5105981 Pmen_3513 Pseudomonas mendocina ymp serine O-acetyltransferase YP_001188993.1 3872503 R 399739 CDS YP_001188994.1 146308529 5105982 complement(3873281..3874069) 1 NC_009439.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase 3874069 5105982 Pmen_3514 Pseudomonas mendocina ymp RNA methyltransferase YP_001188994.1 3873281 R 399739 CDS YP_001188995.1 146308530 5105983 3874206..3875021 1 NC_009439.1 PFAM: inositol monophosphatase; inositol-phosphate phosphatase 3875021 5105983 Pmen_3515 Pseudomonas mendocina ymp inositol-phosphate phosphatase YP_001188995.1 3874206 D 399739 CDS YP_001188996.1 146308531 5105984 complement(3875155..3875697) 1 NC_009439.1 PFAM: 17 kDa surface antigen; hypothetical protein 3875697 5105984 Pmen_3516 Pseudomonas mendocina ymp hypothetical protein YP_001188996.1 3875155 R 399739 CDS YP_001188997.1 146308532 5105985 complement(3875816..3876733) 1 NC_009439.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 3876733 secF 5105985 secF Pseudomonas mendocina ymp preprotein translocase subunit SecF YP_001188997.1 3875816 R 399739 CDS YP_001188998.1 146308533 5105986 complement(3876743..3878611) 1 NC_009439.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 3878611 secD 5105986 secD Pseudomonas mendocina ymp preprotein translocase subunit SecD YP_001188998.1 3876743 R 399739 CDS YP_001188999.1 146308534 5105987 complement(3878683..3879012) 1 NC_009439.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 3879012 yajC 5105987 yajC Pseudomonas mendocina ymp preprotein translocase subunit YajC YP_001188999.1 3878683 R 399739 CDS YP_001189000.1 146308535 5105988 complement(3879053..3880186) 1 NC_009439.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 3880186 tgt 5105988 tgt Pseudomonas mendocina ymp queuine tRNA-ribosyltransferase YP_001189000.1 3879053 R 399739 CDS YP_001189001.1 146308536 5105989 complement(3880189..3881232) 1 NC_009439.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 3881232 queA 5105989 queA Pseudomonas mendocina ymp S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001189001.1 3880189 R 399739 CDS YP_001189002.1 146308537 5105990 complement(3881324..3882154) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 3882154 5105990 Pmen_3522 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001189002.1 3881324 R 399739 CDS YP_001189003.1 146308538 5107289 3882691..3882903 1 NC_009439.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding protein family protein 3882903 5107289 Pmen_3523 Pseudomonas mendocina ymp cold-shock DNA-binding protein family protein YP_001189003.1 3882691 D 399739 CDS YP_001189004.1 146308539 5105992 3883008..3883505 1 NC_009439.1 PFAM: RDD domain containing protein; RDD domain-containing protein 3883505 5105992 Pmen_3524 Pseudomonas mendocina ymp RDD domain-containing protein YP_001189004.1 3883008 D 399739 CDS YP_001189005.1 146308540 5105993 complement(3883566..3884630) 1 NC_009439.1 PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 3884630 5105993 Pmen_3525 Pseudomonas mendocina ymp YjgP/YjgQ family permease YP_001189005.1 3883566 R 399739 CDS YP_001189006.1 146308541 5105994 complement(3884623..3885741) 1 NC_009439.1 PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease 3885741 5105994 Pmen_3526 Pseudomonas mendocina ymp YjgP/YjgQ family permease YP_001189006.1 3884623 R 399739 CDS YP_001189007.1 146308542 5105995 3885833..3887371 1 NC_009439.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 3887371 5105995 Pmen_3527 Pseudomonas mendocina ymp leucyl aminopeptidase YP_001189007.1 3885833 D 399739 CDS YP_001189008.1 146308543 5105996 3887483..3887902 1 NC_009439.1 PFAM: DNA polymerase III chi subunit, HolC; DNA polymerase III subunit chi 3887902 5105996 Pmen_3528 Pseudomonas mendocina ymp DNA polymerase III subunit chi YP_001189008.1 3887483 D 399739 CDS YP_001189009.1 146308544 5105997 3887963..3888406 1 NC_009439.1 hypothetical protein 3888406 5105997 Pmen_3529 Pseudomonas mendocina ymp hypothetical protein YP_001189009.1 3887963 D 399739 CDS YP_001189010.1 146308545 5105998 3888569..3891400 1 NC_009439.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 3891400 valS 5105998 valS Pseudomonas mendocina ymp valyl-tRNA synthetase YP_001189010.1 3888569 D 399739 CDS YP_001189011.1 146308546 5105999 3891504..3892937 1 NC_009439.1 PFAM: Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 3892937 5105999 Pmen_3531 Pseudomonas mendocina ymp Na+/H+ antiporter NhaC YP_001189011.1 3891504 D 399739 CDS YP_001189012.1 146308547 5106000 3893193..3894569 1 NC_009439.1 PFAM: Citrate transporter; citrate transporter 3894569 5106000 Pmen_3532 Pseudomonas mendocina ymp citrate transporter YP_001189012.1 3893193 D 399739 CDS YP_001189013.1 146308548 5106001 3894607..3894903 1 NC_009439.1 hypothetical protein 3894903 5106001 Pmen_3533 Pseudomonas mendocina ymp hypothetical protein YP_001189013.1 3894607 D 399739 CDS YP_001189014.1 146308549 5106002 3895096..3896925 1 NC_009439.1 PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; citrate transporter 3896925 5106002 Pmen_3534 Pseudomonas mendocina ymp citrate transporter YP_001189014.1 3895096 D 399739 CDS YP_001189015.1 146308550 5106003 3897040..3898041 1 NC_009439.1 PFAM: protein of unknown function DUF890; putative SAM-dependent methyltransferase 3898041 5106003 Pmen_3535 Pseudomonas mendocina ymp putative SAM-dependent methyltransferase YP_001189015.1 3897040 D 399739 CDS YP_001189016.1 146308551 5106004 complement(3898136..3899380) 1 NC_009439.1 PFAM: Arsenical pump membrane protein; Citrate transporter; citrate transporter 3899380 5106004 Pmen_3536 Pseudomonas mendocina ymp citrate transporter YP_001189016.1 3898136 R 399739 CDS YP_001189017.1 146308552 5106005 complement(3899610..3900152) 1 NC_009439.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 3900152 5106005 Pmen_3537 Pseudomonas mendocina ymp isochorismatase hydrolase YP_001189017.1 3899610 R 399739 CDS YP_001189018.1 146308553 5106006 complement(3900155..3903589) 1 NC_009439.1 PFAM: SMC domain protein; SMC domain-containing protein 3903589 5106006 Pmen_3538 Pseudomonas mendocina ymp SMC domain-containing protein YP_001189018.1 3900155 R 399739 CDS YP_001189019.1 146308554 5106007 complement(3903648..3904010) 1 NC_009439.1 hypothetical protein 3904010 5106007 Pmen_3539 Pseudomonas mendocina ymp hypothetical protein YP_001189019.1 3903648 R 399739 CDS YP_001189020.1 146308555 5106008 complement(3904101..3905198) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 3905198 5106008 Pmen_3540 Pseudomonas mendocina ymp diguanylate cyclase YP_001189020.1 3904101 R 399739 CDS YP_001189021.1 146308556 5106009 complement(3905508..3906467) 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3906467 5106009 Pmen_3541 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001189021.1 3905508 R 399739 CDS YP_001189022.1 146308557 5106089 complement(3906881..3908095) 1 NC_009439.1 with SbcC cleaves DNA hairpin structure, also has 5' single-strand endonuclease activity; exonuclease subunit SbcD 3908095 5106089 Pmen_3542 Pseudomonas mendocina ymp exonuclease subunit SbcD YP_001189022.1 3906881 R 399739 CDS YP_001189023.1 146308558 5106090 3908321..3909118 1 NC_009439.1 ribosomal protein L11 methylase-like protein 3909118 5106090 Pmen_3543 Pseudomonas mendocina ymp ribosomal protein L11 methylase-like protein YP_001189023.1 3908321 D 399739 CDS YP_001189024.1 146308559 5106091 3909122..3910468 1 NC_009439.1 PFAM: amino acid permease-associated region; amino acid permease-associated protein 3910468 5106091 Pmen_3544 Pseudomonas mendocina ymp amino acid permease-associated protein YP_001189024.1 3909122 D 399739 CDS YP_001189025.1 146308560 5106092 complement(3910479..3910952) 1 NC_009439.1 PFAM: regulatory protein, AsnC/Lrp family; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; AsnC family transcriptional regulator 3910952 5106092 Pmen_3545 Pseudomonas mendocina ymp AsnC family transcriptional regulator YP_001189025.1 3910479 R 399739 CDS YP_001189026.1 146308561 5106093 3911021..3912274 1 NC_009439.1 uncharacterized member of the APC superfamily of amino acid transporters; unknown function; inner membrane protein YjeH 3912274 5106093 Pmen_3546 Pseudomonas mendocina ymp inner membrane protein YjeH YP_001189026.1 3911021 D 399739 CDS YP_001189027.1 146308562 5106094 3912509..3913879 1 NC_009439.1 TRAP-type transport system periplasmic component-like protein 3913879 5106094 Pmen_3547 Pseudomonas mendocina ymp TRAP-type transport system periplasmic component-like protein YP_001189027.1 3912509 D 399739 CDS YP_001189028.1 146308563 5106095 complement(3913996..3915663) 1 NC_009439.1 PFAM: peptidase M20; protease-associated PA domain protein; peptidase M28; aminopeptidase Y 3915663 5106095 Pmen_3548 Pseudomonas mendocina ymp aminopeptidase Y YP_001189028.1 3913996 R 399739 CDS YP_001189029.1 146308564 5106096 3915943..3916950 1 NC_009439.1 PFAM: 37kDa nucleoid-associated protein; nucleoid-associated protein NdpA 3916950 5106096 Pmen_3549 Pseudomonas mendocina ymp nucleoid-associated protein NdpA YP_001189029.1 3915943 D 399739 CDS YP_001189030.1 146308565 5106097 3916952..3917800 1 NC_009439.1 PFAM: protein of unknown function DUF344; hypothetical protein 3917800 5106097 Pmen_3550 Pseudomonas mendocina ymp hypothetical protein YP_001189030.1 3916952 D 399739 CDS YP_001189031.1 146308566 5106098 3917797..3918117 1 NC_009439.1 PFAM: glutaredoxin; glutaredoxin 3918117 5106098 Pmen_3551 Pseudomonas mendocina ymp glutaredoxin YP_001189031.1 3917797 D 399739 CDS YP_001189032.1 146308567 5106099 complement(3918183..3919118) 1 NC_009439.1 glutathione S-transferase-like protein 3919118 5106099 Pmen_3552 Pseudomonas mendocina ymp glutathione S-transferase-like protein YP_001189032.1 3918183 R 399739 CDS YP_001189033.1 146308568 5106100 complement(3919183..3919464) 1 NC_009439.1 PFAM: Excinuclease ABC, C subunit domain protein; GIY-YIG nuclease superfamily protein 3919464 5106100 Pmen_3553 Pseudomonas mendocina ymp GIY-YIG nuclease superfamily protein YP_001189033.1 3919183 R 399739 CDS YP_001189034.1 146308569 5106101 complement(3919461..3920225) 1 NC_009439.1 PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol-choline O-phosphatidyltransferase 3920225 5106101 Pmen_3554 Pseudomonas mendocina ymp CDP-diacylglycerol-choline O-phosphatidyltransferase YP_001189034.1 3919461 R 399739 CDS YP_001189035.1 146308570 5106102 complement(3920279..3920749) 1 NC_009439.1 PFAM: protein of unknown function DUF1486; hypothetical protein 3920749 5106102 Pmen_3555 Pseudomonas mendocina ymp hypothetical protein YP_001189035.1 3920279 R 399739 CDS YP_001189036.1 146308571 5106103 3920910..3921869 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; transcriptional regulator 3921869 5106103 Pmen_3556 Pseudomonas mendocina ymp transcriptional regulator YP_001189036.1 3920910 D 399739 CDS YP_001189037.1 146308572 5106104 complement(3922017..3922778) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3922778 5106104 Pmen_3557 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189037.1 3922017 R 399739 CDS YP_001189038.1 146308573 5106105 complement(3922788..3923885) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3923885 5106105 Pmen_3558 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001189038.1 3922788 R 399739 CDS YP_001189039.1 146308574 5106106 complement(3923895..3925079) 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3925079 5106106 Pmen_3559 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001189039.1 3923895 R 399739 CDS YP_001189040.1 146308575 5106107 complement(3925178..3926206) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3926206 5106107 Pmen_3560 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001189040.1 3925178 R 399739 CDS YP_001189041.1 146308576 5106108 3926684..3927343 1 NC_009439.1 PFAM: phospholipase/Carboxylesterase; carboxylesterase 3927343 5106108 Pmen_3561 Pseudomonas mendocina ymp carboxylesterase YP_001189041.1 3926684 D 399739 CDS YP_001189042.1 146308577 5106109 3927458..3929359 1 NC_009439.1 activates fatty acids by binding to coenzyme A; AMP-binding domain-containing protein 3929359 5106109 Pmen_3562 Pseudomonas mendocina ymp AMP-binding domain-containing protein YP_001189042.1 3927458 D 399739 CDS YP_001189043.1 146308578 5106110 3929551..3930489 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; cyclic nucleotide-binding protein 3930489 5106110 Pmen_3563 Pseudomonas mendocina ymp cyclic nucleotide-binding protein YP_001189043.1 3929551 D 399739 CDS YP_001189044.1 146308579 5106111 3930588..3931751 1 NC_009439.1 PFAM: amidohydrolase 2; peptidase M19, renal dipeptidase; peptidase M19 3931751 5106111 Pmen_3564 Pseudomonas mendocina ymp peptidase M19 YP_001189044.1 3930588 D 399739 CDS YP_001189045.1 146308580 5106112 3931851..3933299 1 NC_009439.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 3933299 5106112 Pmen_3565 Pseudomonas mendocina ymp ATP-dependent RNA helicase RhlB YP_001189045.1 3931851 D 399739 CDS YP_001189046.1 146308581 5106113 3933635..3934594 1 NC_009439.1 PFAM: ornithine cyclodeaminase/mu-crystallin; ornithine cyclodeaminase 3934594 5106113 Pmen_3566 Pseudomonas mendocina ymp ornithine cyclodeaminase YP_001189046.1 3933635 D 399739 CDS YP_001189047.1 146308582 5106114 3934597..3935742 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 3935742 5106114 Pmen_3567 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001189047.1 3934597 D 399739 CDS YP_001189048.1 146308583 5106115 3935855..3936484 1 NC_009439.1 PFAM: YheO domain protein; YheO domain-containing protein 3936484 5106115 Pmen_3568 Pseudomonas mendocina ymp YheO domain-containing protein YP_001189048.1 3935855 D 399739 CDS YP_001189049.1 146308584 5106116 3936489..3936935 1 NC_009439.1 hypothetical protein 3936935 5106116 Pmen_3569 Pseudomonas mendocina ymp hypothetical protein YP_001189049.1 3936489 D 399739 CDS YP_001189050.1 146308585 5106117 complement(3936972..3937586) 1 NC_009439.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 3937586 5106117 Pmen_3570 Pseudomonas mendocina ymp isochorismatase hydrolase YP_001189050.1 3936972 R 399739 CDS YP_001189051.1 146308586 5106118 3937730..3938683 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3938683 5106118 Pmen_3571 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189051.1 3937730 D 399739 CDS YP_001189052.1 146308587 5106119 complement(3938764..3941124) 1 NC_009439.1 Has polymerase, DNA-binding and 3'-5' exonuclease activities. In Aeropyrum pernix this protein is sensitive to aphidicolin and stable at 95#C; DNA polymerase II 3941124 5106119 Pmen_3572 Pseudomonas mendocina ymp DNA polymerase II YP_001189052.1 3938764 R 399739 CDS YP_001189053.1 146308588 5106120 3941414..3942742 1 NC_009439.1 PFAM: cation transporter; H(+)-transporting two-sector ATPase 3942742 5106120 Pmen_3573 Pseudomonas mendocina ymp H(+)-transporting two-sector ATPase YP_001189053.1 3941414 D 399739 CDS YP_001189054.1 146308589 5106121 3942735..3943427 1 NC_009439.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; TrkA domain-containing protein 3943427 5106121 Pmen_3574 Pseudomonas mendocina ymp TrkA domain-containing protein YP_001189054.1 3942735 D 399739 CDS YP_001189055.1 146308590 5106122 3943459..3943920 1 NC_009439.1 PFAM: globin; globin 3943920 5106122 Pmen_3575 Pseudomonas mendocina ymp globin YP_001189055.1 3943459 D 399739 CDS YP_001189056.1 146308591 5106123 3943917..3944255 1 NC_009439.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 3944255 5106123 Pmen_3576 Pseudomonas mendocina ymp FKBP-type peptidylprolyl isomerase YP_001189056.1 3943917 D 399739 CDS YP_001189057.1 146308592 5106124 3944248..3945174 1 NC_009439.1 SAM-dependent methyltransferase-like protein 3945174 5106124 Pmen_3577 Pseudomonas mendocina ymp SAM-dependent methyltransferase-like protein YP_001189057.1 3944248 D 399739 CDS YP_001189058.1 146308593 5106125 complement(3945272..3946048) 1 NC_009439.1 TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3; cationic amino acid ABC transporter periplasmic binding protein 3946048 5106125 Pmen_3578 Pseudomonas mendocina ymp cationic amino acid ABC transporter periplasmic binding protein YP_001189058.1 3945272 R 399739 CDS YP_001189059.1 146308594 5106126 complement(3946353..3947903) 1 NC_009439.1 Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon; anaerobic nitric oxide reductase transcriptional regulator 3947903 5106126 Pmen_3579 Pseudomonas mendocina ymp anaerobic nitric oxide reductase transcriptional regulator YP_001189059.1 3946353 R 399739 CDS YP_001189060.1 146308595 5106127 3948096..3949277 1 NC_009439.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 3949277 5106127 Pmen_3580 Pseudomonas mendocina ymp nitric oxide dioxygenase YP_001189060.1 3948096 D 399739 CDS YP_001189061.1 146308596 5106128 3949297..3949548 1 NC_009439.1 hypothetical protein 3949548 5106128 Pmen_3581 Pseudomonas mendocina ymp hypothetical protein YP_001189061.1 3949297 D 399739 CDS YP_001189062.1 146308597 5106129 3949535..3950710 1 NC_009439.1 PFAM: NnrS family protein; NnrS family protein 3950710 5106129 Pmen_3582 Pseudomonas mendocina ymp NnrS family protein YP_001189062.1 3949535 D 399739 CDS YP_001189063.1 146308598 5106130 complement(3950757..3951464) 1 NC_009439.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 3951464 5106130 Pmen_3583 Pseudomonas mendocina ymp sugar fermentation stimulation protein A YP_001189063.1 3950757 R 399739 CDS YP_001189064.1 146308599 5106131 complement(3951454..3952635) 1 NC_009439.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; hypothetical protein 3952635 5106131 Pmen_3584 Pseudomonas mendocina ymp hypothetical protein YP_001189064.1 3951454 R 399739 CDS YP_001189065.1 146308600 5106132 3952893..3953339 1 NC_009439.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator 3953339 5106132 Pmen_3585 Pseudomonas mendocina ymp TraR/DksA family transcriptional regulator YP_001189065.1 3952893 D 399739 CDS YP_001189066.1 146308601 5106133 3953390..3954274 1 NC_009439.1 this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 3954274 5106133 Pmen_3586 Pseudomonas mendocina ymp glutamyl-Q tRNA(Asp) synthetase YP_001189066.1 3953390 D 399739 CDS YP_001189067.1 146308602 5106134 3954414..3954590 1 NC_009439.1 hypothetical protein 3954590 5106134 Pmen_3587 Pseudomonas mendocina ymp hypothetical protein YP_001189067.1 3954414 D 399739 CDS YP_001189068.1 146308603 5106135 3954574..3957528 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: Na+/solute symporter; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; two-component sensor kinase CbrA 3957528 5106135 Pmen_3588 Pseudomonas mendocina ymp two-component sensor kinase CbrA YP_001189068.1 3954574 D 399739 CDS YP_001189069.1 146308604 5106136 3957582..3959015 1 NC_009439.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; two-component response regulator CbrB 3959015 5106136 Pmen_3589 Pseudomonas mendocina ymp two-component response regulator CbrB YP_001189069.1 3957582 D 399739 CDS YP_001189070.1 146308605 5106137 3959842..3961233 1 NC_009439.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 3961233 5106137 Pmen_3590 Pseudomonas mendocina ymp poly(A) polymerase YP_001189070.1 3959842 D 399739 CDS YP_001189071.1 146308606 5106138 3961230..3961718 1 NC_009439.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3961718 5106138 Pmen_3591 Pseudomonas mendocina ymp 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001189071.1 3961230 D 399739 CDS YP_001189072.1 146308607 5106139 3961992..3962792 1 NC_009439.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3962792 panB 5106139 panB Pseudomonas mendocina ymp 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001189072.1 3961992 D 399739 CDS YP_001189073.1 146308608 5106140 3962789..3963646 1 NC_009439.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 3963646 panC 5106140 panC Pseudomonas mendocina ymp pantoate--beta-alanine ligase YP_001189073.1 3962789 D 399739 CDS YP_001189074.1 146308609 5106141 3963725..3965389 1 NC_009439.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 3965389 pgi 5106141 pgi Pseudomonas mendocina ymp glucose-6-phosphate isomerase YP_001189074.1 3963725 D 399739 CDS YP_001189075.1 146308610 5106142 3965694..3967631 1 NC_009439.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 3967631 5106142 Pmen_3595 Pseudomonas mendocina ymp acetyl-CoA synthetase YP_001189075.1 3965694 D 399739 CDS YP_001189076.1 146308611 5106143 3967752..3968618 1 NC_009439.1 hypothetical protein 3968618 5106143 Pmen_3596 Pseudomonas mendocina ymp hypothetical protein YP_001189076.1 3967752 D 399739 CDS YP_001189077.1 146308612 5106144 3968709..3969890 1 NC_009439.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 3969890 5106144 Pmen_3597 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001189077.1 3968709 D 399739 CDS YP_001189078.1 146308613 5106145 3970033..3971049 1 NC_009439.1 PFAM: conserved hypothetical protein 95; hypothetical protein 3971049 5106145 Pmen_3598 Pseudomonas mendocina ymp hypothetical protein YP_001189078.1 3970033 D 399739 CDS YP_001189079.1 146308614 5106146 3971154..3974036 1 NC_009439.1 PFAM: protein of unknown function DUF748; hypothetical protein 3974036 5106146 Pmen_3599 Pseudomonas mendocina ymp hypothetical protein YP_001189079.1 3971154 D 399739 CDS YP_001189080.1 146308615 5106147 3974033..3974329 1 NC_009439.1 hypothetical protein 3974329 5106147 Pmen_3600 Pseudomonas mendocina ymp hypothetical protein YP_001189080.1 3974033 D 399739 CDS YP_001189081.1 146308616 5106148 3974343..3974645 1 NC_009439.1 hypothetical protein 3974645 5106148 Pmen_3601 Pseudomonas mendocina ymp hypothetical protein YP_001189081.1 3974343 D 399739 CDS YP_001189082.1 146308617 5106149 complement(3974799..3974996) 1 NC_009439.1 PFAM: CsbD family protein; CsbD family protein 3974996 5106149 Pmen_3602 Pseudomonas mendocina ymp CsbD family protein YP_001189082.1 3974799 R 399739 CDS YP_001189083.1 146308618 5106150 complement(3975051..3975401) 1 NC_009439.1 PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated 3975401 5106150 Pmen_3603 Pseudomonas mendocina ymp transport-associated YP_001189083.1 3975051 R 399739 CDS YP_001189084.1 146308619 5106151 complement(3975788..3977965) 1 NC_009439.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 3977965 5106151 Pmen_3604 Pseudomonas mendocina ymp polynucleotide phosphorylase/polyadenylase YP_001189084.1 3975788 R 399739 CDS YP_001189085.1 146308620 5106152 complement(3978068..3978337) 1 NC_009439.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 3978337 rpsO 5106152 rpsO Pseudomonas mendocina ymp 30S ribosomal protein S15 YP_001189085.1 3978068 R 399739 CDS YP_001189086.1 146308621 5106153 complement(3978505..3979425) 1 NC_009439.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 3979425 truB 5106153 truB Pseudomonas mendocina ymp tRNA pseudouridine synthase B YP_001189086.1 3978505 R 399739 CDS YP_001189087.1 146308622 5106154 complement(3979428..3979817) 1 NC_009439.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 3979817 rbfA 5106154 rbfA Pseudomonas mendocina ymp ribosome-binding factor A YP_001189087.1 3979428 R 399739 CDS YP_001189088.1 146308623 5106155 complement(3979930..3982416) 1 NC_009439.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 3982416 infB 5106155 infB Pseudomonas mendocina ymp translation initiation factor IF-2 YP_001189088.1 3979930 R 399739 CDS YP_001189089.1 146308624 5106156 complement(3982444..3983925) 1 NC_009439.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 3983925 nusA 5106156 nusA Pseudomonas mendocina ymp transcription elongation factor NusA YP_001189089.1 3982444 R 399739 CDS YP_001189090.1 146308625 5106157 complement(3984086..3984544) 1 NC_009439.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 3984544 5106157 Pmen_3610 Pseudomonas mendocina ymp hypothetical protein YP_001189090.1 3984086 R 399739 CDS YP_001189091.1 146308626 5107291 complement(3984941..3985318) 1 NC_009439.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 3985318 secG 5107291 secG Pseudomonas mendocina ymp preprotein translocase subunit SecG YP_001189091.1 3984941 R 399739 CDS YP_001189092.1 146308627 5106159 complement(3985322..3986077) 1 NC_009439.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3986077 tpiA 5106159 tpiA Pseudomonas mendocina ymp triosephosphate isomerase YP_001189092.1 3985322 R 399739 CDS YP_001189093.1 146308628 5106160 complement(3986143..3987480) 1 NC_009439.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3987480 glmM 5106160 glmM Pseudomonas mendocina ymp phosphoglucosamine mutase YP_001189093.1 3986143 R 399739 CDS YP_001189094.1 146308629 5106161 complement(3987494..3988345) 1 NC_009439.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 3988345 5106161 Pmen_3614 Pseudomonas mendocina ymp dihydropteroate synthase YP_001189094.1 3987494 R 399739 CDS YP_001189095.1 146308630 5106162 complement(3988354..3990276) 1 NC_009439.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; membrane protease FtsH catalytic subunit 3990276 5106162 Pmen_3615 Pseudomonas mendocina ymp membrane protease FtsH catalytic subunit YP_001189095.1 3988354 R 399739 CDS YP_001189096.1 146308631 5106163 complement(3990440..3991063) 1 NC_009439.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 3991063 5106163 Pmen_3616 Pseudomonas mendocina ymp ribosomal RNA methyltransferase RrmJ/FtsJ YP_001189096.1 3990440 R 399739 CDS YP_001189097.1 146308632 5106164 3991154..3991465 1 NC_009439.1 PFAM: protein of unknown function UPF0044; hypothetical protein 3991465 5106164 Pmen_3617 Pseudomonas mendocina ymp hypothetical protein YP_001189097.1 3991154 D 399739 CDS YP_001189098.1 146308633 5106165 complement(3991549..3992010) 1 NC_009439.1 hypothetical protein 3992010 5106165 Pmen_3618 Pseudomonas mendocina ymp hypothetical protein YP_001189098.1 3991549 R 399739 CDS YP_001189099.1 146308634 5106166 complement(3991967..3992443) 1 NC_009439.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 3992443 greA 5106166 greA Pseudomonas mendocina ymp transcription elongation factor GreA YP_001189099.1 3991967 R 399739 CDS YP_001189100.1 146308635 5106167 complement(3992440..3995661) 1 NC_009439.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 3995661 carB 5106167 carB Pseudomonas mendocina ymp carbamoyl phosphate synthase large subunit YP_001189100.1 3992440 R 399739 CDS YP_001189101.1 146308636 5110082 complement(3995698..3996846) 1 NC_009439.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 3996846 5110082 Pmen_3621 Pseudomonas mendocina ymp carbamoyl phosphate synthase small subunit YP_001189101.1 3995698 R 399739 CDS YP_001189102.1 146308637 5110083 complement(3997036..3997839) 1 NC_009439.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3997839 5110083 Pmen_3622 Pseudomonas mendocina ymp dihydrodipicolinate reductase YP_001189102.1 3997036 R 399739 CDS YP_001189103.1 146308638 5110084 complement(3997888..3999015) 1 NC_009439.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 3999015 5110084 Pmen_3623 Pseudomonas mendocina ymp chaperone protein DnaJ YP_001189103.1 3997888 R 399739 CDS YP_001189104.1 146308639 5110085 complement(3999151..4001064) 1 NC_009439.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 4001064 dnaK 5110085 dnaK Pseudomonas mendocina ymp molecular chaperone DnaK YP_001189104.1 3999151 R 399739 CDS YP_001189105.1 146308640 5110086 complement(4001164..4001733) 1 NC_009439.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 4001733 5110086 Pmen_3625 Pseudomonas mendocina ymp heat shock protein GrpE YP_001189105.1 4001164 R 399739 CDS YP_001189106.1 146308641 5110087 4001891..4003567 1 NC_009439.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein RecN 4003567 5110087 Pmen_3626 Pseudomonas mendocina ymp DNA repair protein RecN YP_001189106.1 4001891 D 399739 CDS YP_001189107.1 146308642 5110088 complement(4003671..4004090) 1 NC_009439.1 PFAM: ferric-uptake regulator; ferric uptake regulator family protein 4004090 5110088 Pmen_3627 Pseudomonas mendocina ymp ferric uptake regulator family protein YP_001189107.1 4003671 R 399739 CDS YP_001189108.1 146308643 5110089 4004170..4004688 1 NC_009439.1 PFAM: SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 4004688 5110089 Pmen_3628 Pseudomonas mendocina ymp SmpA/OmlA domain-containing protein YP_001189108.1 4004170 D 399739 CDS YP_001189109.1 146308644 5110090 complement(4004767..4005087) 1 NC_009439.1 PFAM: protein of unknown function UPF0125; hypothetical protein 4005087 5110090 Pmen_3629 Pseudomonas mendocina ymp hypothetical protein YP_001189109.1 4004767 R 399739 CDS YP_001189110.1 146308645 5110091 complement(4005080..4005514) 1 NC_009439.1 PFAM: cyclase/dehydrase; cyclase/dehydrase 4005514 5110091 Pmen_3630 Pseudomonas mendocina ymp cyclase/dehydrase YP_001189110.1 4005080 R 399739 CDS YP_001189111.1 146308646 5110092 complement(4005514..4006917) 1 NC_009439.1 PFAM: sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 4006917 5110092 Pmen_3631 Pseudomonas mendocina ymp sodium:neurotransmitter symporter YP_001189111.1 4005514 R 399739 CDS YP_001189112.1 146308647 5110093 4007006..4007527 1 NC_009439.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 4007527 smpB 5110093 smpB Pseudomonas mendocina ymp SsrA-binding protein YP_001189112.1 4007006 D 399739 CDS YP_001189113.1 146308648 5110094 complement(4007775..4008548) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 4008548 5110094 Pmen_3633 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001189113.1 4007775 R 399739 CDS YP_001189114.1 146308649 5110095 4008846..4010540 1 NC_009439.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; L-lactate transport 4010540 5110095 Pmen_3634 Pseudomonas mendocina ymp L-lactate transport YP_001189114.1 4008846 D 399739 CDS YP_001189115.1 146308650 5110096 4010633..4011772 1 NC_009439.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 4011772 lldD 5110096 lldD Pseudomonas mendocina ymp L-lactate dehydrogenase YP_001189115.1 4010633 D 399739 CDS YP_001189116.1 146308651 5110097 4011777..4013549 1 NC_009439.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 4013549 5110097 Pmen_3636 Pseudomonas mendocina ymp D-lactate dehydrogenase YP_001189116.1 4011777 D 399739 CDS YP_001189117.1 146308652 5110098 4013546..4013905 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 4013905 5110098 Pmen_3637 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001189117.1 4013546 D 399739 CDS YP_001189118.1 146308653 5110099 4013925..4015487 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 4015487 5110099 Pmen_3638 Pseudomonas mendocina ymp transposase IS66 YP_001189118.1 4013925 D 399739 CDS YP_001189119.1 146308654 5110100 complement(4015771..4018335) 1 NC_009439.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase 4018335 5110100 Pmen_3639 Pseudomonas mendocina ymp ATPase YP_001189119.1 4015771 R 399739 CDS YP_001189120.1 146308655 5110101 complement(4018455..4019192) 1 NC_009439.1 PFAM: nitroreductase; nitroreductase 4019192 5110101 Pmen_3640 Pseudomonas mendocina ymp nitroreductase YP_001189120.1 4018455 R 399739 CDS YP_001189121.1 146308656 5110102 complement(4019322..4019807) 1 NC_009439.1 PFAM: glutathione peroxidase; peroxiredoxin 4019807 5110102 Pmen_3641 Pseudomonas mendocina ymp peroxiredoxin YP_001189121.1 4019322 R 399739 CDS YP_001189122.1 146308657 5110103 complement(4019983..4020468) 1 NC_009439.1 PFAM: peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 4020468 5110103 Pmen_3642 Pseudomonas mendocina ymp FKBP-type peptidylprolyl isomerase YP_001189122.1 4019983 R 399739 CDS YP_001189123.1 146308658 5110104 4020480..4020764 1 NC_009439.1 hypothetical protein 4020764 5110104 Pmen_3643 Pseudomonas mendocina ymp hypothetical protein YP_001189123.1 4020480 D 399739 CDS YP_001189124.1 146308659 5110105 4020765..4021949 1 NC_009439.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 4021949 5110105 Pmen_3644 Pseudomonas mendocina ymp acetate kinase YP_001189124.1 4020765 D 399739 CDS YP_001189125.1 146308660 5110106 4021959..4024052 1 NC_009439.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 4024052 5110106 Pmen_3645 Pseudomonas mendocina ymp phosphate acetyltransferase YP_001189125.1 4021959 D 399739 CDS YP_001189126.1 146308661 5110107 4024283..4025179 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; putative acyltransferase 4025179 5110107 Pmen_3646 Pseudomonas mendocina ymp putative acyltransferase YP_001189126.1 4024283 D 399739 CDS YP_001189127.1 146308662 5110108 complement(4025195..4027342) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; SMART: PAS domain containing protein; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 4027342 5110108 Pmen_3647 Pseudomonas mendocina ymp response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_001189127.1 4025195 R 399739 CDS YP_001189128.1 146308663 5110109 complement(4027387..4031100) 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 4031100 5110109 Pmen_3648 Pseudomonas mendocina ymp multi-sensor hybrid histidine kinase YP_001189128.1 4027387 R 399739 CDS YP_001189129.1 146308664 5110110 complement(4031345..4032001) 1 NC_009439.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; OmpA/MotB domain-containing protein 4032001 5110110 Pmen_3649 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001189129.1 4031345 R 399739 CDS YP_001189130.1 146308665 5110111 complement(4032142..4032810) 1 NC_009439.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; OmpA/MotB domain-containing protein 4032810 5110111 Pmen_3650 Pseudomonas mendocina ymp OmpA/MotB domain-containing protein YP_001189130.1 4032142 R 399739 CDS YP_001189131.1 146308666 5110112 complement(4032871..4033518) 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 4033518 5110112 Pmen_3651 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001189131.1 4032871 R 399739 CDS YP_001189132.1 146308667 5110113 complement(4033518..4034540) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4034540 5110113 Pmen_3652 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189132.1 4033518 R 399739 CDS YP_001189133.1 146308668 5110114 4034635..4035489 1 NC_009439.1 metal-dependent hydrolase-like protein 4035489 5110114 Pmen_3653 Pseudomonas mendocina ymp metal-dependent hydrolase-like protein YP_001189133.1 4034635 D 399739 CDS YP_001189134.1 146308669 5110115 4035754..4036599 1 NC_009439.1 metal-dependent hydrolase-like protein 4036599 5110115 Pmen_3654 Pseudomonas mendocina ymp metal-dependent hydrolase-like protein YP_001189134.1 4035754 D 399739 CDS YP_001189135.1 146308670 5110116 complement(4036715..4037653) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4037653 5110116 Pmen_3655 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001189135.1 4036715 R 399739 CDS YP_001189136.1 146308671 5110117 complement(4037724..4038395) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4038395 5110117 Pmen_3656 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001189136.1 4037724 R 399739 CDS YP_001189137.1 146308672 5110118 4038478..4039338 1 NC_009439.1 hypothetical protein 4039338 5110118 Pmen_3657 Pseudomonas mendocina ymp hypothetical protein YP_001189137.1 4038478 D 399739 CDS YP_001189138.1 146308673 5110119 complement(4039327..4042071) 1 NC_009439.1 PFAM: regulatory protein, LuxR; SMART: AAA ATPase; regulatory protein LuxR 4042071 5110119 Pmen_3658 Pseudomonas mendocina ymp regulatory protein LuxR YP_001189138.1 4039327 R 399739 CDS YP_001189139.1 146308674 5110120 complement(4042214..4043587) 1 NC_009439.1 PFAM: protein of unknown function DUF1329; hypothetical protein 4043587 5110120 Pmen_3659 Pseudomonas mendocina ymp hypothetical protein YP_001189139.1 4042214 R 399739 CDS YP_001189140.1 146308675 5110121 complement(4043614..4045593) 1 NC_009439.1 PFAM: protein of unknown function DUF1302; hypothetical protein 4045593 5110121 Pmen_3660 Pseudomonas mendocina ymp hypothetical protein YP_001189140.1 4043614 R 399739 CDS YP_001189141.1 146308676 5110122 complement(4045808..4047490) 1 NC_009439.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 4047490 5110122 Pmen_3661 Pseudomonas mendocina ymp long-chain-fatty-acid--CoA ligase YP_001189141.1 4045808 R 399739 CDS YP_001189142.1 146308677 5110123 4047681..4048856 1 NC_009439.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 4048856 5110123 Pmen_3662 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001189142.1 4047681 D 399739 CDS YP_001189143.1 146308678 5110124 complement(4048902..4049531) 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 4049531 5110124 Pmen_3663 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001189143.1 4048902 R 399739 CDS YP_001189144.1 146308679 5110125 4049611..4050576 1 NC_009439.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 4050576 5110125 Pmen_3664 Pseudomonas mendocina ymp glycerate dehydrogenase YP_001189144.1 4049611 D 399739 CDS YP_001189145.1 146308680 5110126 4050697..4051692 1 NC_009439.1 PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; Methyltransferase small, N-terminal domain protein; 16S rRNA m(2)G 1207 methyltransferase 4051692 5110126 Pmen_3665 Pseudomonas mendocina ymp 16S rRNA m(2)G 1207 methyltransferase YP_001189145.1 4050697 D 399739 CDS YP_001189146.1 146308681 5110127 4051937..4052521 1 NC_009439.1 PFAM: protein of unknown function UPF0016; hypothetical protein 4052521 5110127 Pmen_3666 Pseudomonas mendocina ymp hypothetical protein YP_001189146.1 4051937 D 399739 CDS YP_001189147.1 146308682 5110128 4052631..4053074 1 NC_009439.1 PFAM: protein of unknown function DUF1486; hypothetical protein 4053074 5110128 Pmen_3667 Pseudomonas mendocina ymp hypothetical protein YP_001189147.1 4052631 D 399739 CDS YP_001189148.1 146308683 5110129 complement(4053137..4053958) 1 NC_009439.1 PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 4053958 5110129 Pmen_3668 Pseudomonas mendocina ymp peptidase M48, Ste24p YP_001189148.1 4053137 R 399739 CDS YP_001189149.1 146308684 5110130 4054154..4056304 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4056304 5110130 Pmen_3669 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001189149.1 4054154 D 399739 CDS YP_001189150.1 146308685 5110131 complement(4056392..4057009) 1 NC_009439.1 PFAM: protein of unknown function DUF159; hypothetical protein 4057009 5110131 Pmen_3670 Pseudomonas mendocina ymp hypothetical protein YP_001189150.1 4056392 R 399739 CDS YP_001189151.1 146308686 5110132 complement(4057040..4057300) 1 NC_009439.1 hypothetical protein 4057300 5110132 Pmen_3671 Pseudomonas mendocina ymp hypothetical protein YP_001189151.1 4057040 R 399739 CDS YP_001189152.1 146308687 5110133 4057582..4058745 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4058745 5110133 Pmen_3672 Pseudomonas mendocina ymp phospholipid/glycerol acyltransferase YP_001189152.1 4057582 D 399739 CDS YP_001189153.1 146308688 5110134 complement(4058807..4059082) 1 NC_009439.1 hypothetical protein 4059082 5110134 Pmen_3673 Pseudomonas mendocina ymp hypothetical protein YP_001189153.1 4058807 R 399739 CDS YP_001189154.1 146308689 5110135 4059357..4059563 1 NC_009439.1 hypothetical protein 4059563 5110135 Pmen_3674 Pseudomonas mendocina ymp hypothetical protein YP_001189154.1 4059357 D 399739 CDS YP_001189155.1 146308690 5110136 complement(4059620..4060204) 1 NC_009439.1 hypothetical protein 4060204 5110136 Pmen_3675 Pseudomonas mendocina ymp hypothetical protein YP_001189155.1 4059620 R 399739 CDS YP_001189156.1 146308691 5110137 4060372..4060599 1 NC_009439.1 hypothetical protein 4060599 5110137 Pmen_3676 Pseudomonas mendocina ymp hypothetical protein YP_001189156.1 4060372 D 399739 CDS YP_001189157.1 146308692 5110138 4061048..4062544 1 NC_009439.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 4062544 5110138 Pmen_3677 Pseudomonas mendocina ymp malate:quinone oxidoreductase YP_001189157.1 4061048 D 399739 CDS YP_001189158.1 146308693 5110139 complement(4062648..4063106) 1 NC_009439.1 PFAM: CreA family protein; CreA family protein 4063106 5110139 Pmen_3678 Pseudomonas mendocina ymp CreA family protein YP_001189158.1 4062648 R 399739 CDS YP_001189159.1 146308694 5110140 complement(4063116..4064234) 1 NC_009439.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 4064234 5110140 Pmen_3679 Pseudomonas mendocina ymp gamma-glutamyl kinase YP_001189159.1 4063116 R 399739 CDS YP_001189160.1 146308695 5110141 complement(4064316..4065536) 1 NC_009439.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 4065536 obgE 5110141 obgE Pseudomonas mendocina ymp GTPase ObgE YP_001189160.1 4064316 R 399739 CDS YP_001189161.1 146308696 5110142 complement(4065779..4066036) 1 NC_009439.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 4066036 rpmA 5110142 rpmA Pseudomonas mendocina ymp 50S ribosomal protein L27 YP_001189161.1 4065779 R 399739 CDS YP_001189162.1 146308697 5110143 complement(4066074..4066385) 1 NC_009439.1 PFAM: ribosomal protein L21; 50S ribosomal protein L21 4066385 rplU 5110143 rplU Pseudomonas mendocina ymp 50S ribosomal protein L21 YP_001189162.1 4066074 R 399739 CDS YP_001189163.1 146308698 5110144 4066632..4067600 1 NC_009439.1 PFAM: Polyprenyl synthetase; polyprenyl synthetase 4067600 5110144 Pmen_3683 Pseudomonas mendocina ymp polyprenyl synthetase YP_001189163.1 4066632 D 399739 CDS YP_001189164.1 146308699 5110145 complement(4067734..4068492) 1 NC_009439.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 4068492 fabG 5110145 fabG Pseudomonas mendocina ymp 3-ketoacyl-ACP reductase YP_001189164.1 4067734 R 399739 CDS YP_001189165.1 146308700 5110146 4068601..4069335 1 NC_009439.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 4069335 5110146 Pmen_3685 Pseudomonas mendocina ymp pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001189165.1 4068601 D 399739 CDS YP_001189166.1 146308701 5110147 4069403..4069852 1 NC_009439.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 4069852 fxsA 5110147 fxsA Pseudomonas mendocina ymp FxsA protein YP_001189166.1 4069403 D 399739 CDS YP_001189167.1 146308702 5110148 4070173..4070466 1 NC_009439.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 4070466 groES 5110148 groES Pseudomonas mendocina ymp co-chaperonin GroES YP_001189167.1 4070173 D 399739 CDS YP_001189168.1 146308703 5110149 4070516..4072162 1 NC_009439.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 4072162 groEL 5110149 groEL Pseudomonas mendocina ymp chaperonin GroEL YP_001189168.1 4070516 D 399739 CDS YP_001189169.1 146308704 5110150 4072400..4073104 1 NC_009439.1 PFAM: lipopolysaccharide kinase; Mn2+-dependent serine/threonine protein kinase 4073104 5110150 Pmen_3689 Pseudomonas mendocina ymp Mn2+-dependent serine/threonine protein kinase YP_001189169.1 4072400 D 399739 CDS YP_001189170.1 146308705 5110151 4073464..4073700 1 NC_009439.1 hypothetical protein 4073700 5110151 Pmen_3690 Pseudomonas mendocina ymp hypothetical protein YP_001189170.1 4073464 D 399739 CDS YP_001189171.1 146308706 5110152 4073834..4074652 1 NC_009439.1 hypothetical protein 4074652 5110152 Pmen_3691 Pseudomonas mendocina ymp hypothetical protein YP_001189171.1 4073834 D 399739 CDS YP_001189172.1 146308707 5110153 4074719..4075807 1 NC_009439.1 PFAM: protein of unknown function DUF450; hypothetical protein 4075807 5110153 Pmen_3692 Pseudomonas mendocina ymp hypothetical protein YP_001189172.1 4074719 D 399739 CDS YP_001189173.1 146308708 5110154 complement(4076291..4077118) 1 NC_009439.1 PFAM: N-acetyltransferase; N-hydroxyarylamine O-acetyltransferase 4077118 5110154 Pmen_3693 Pseudomonas mendocina ymp N-hydroxyarylamine O-acetyltransferase YP_001189173.1 4076291 R 399739 CDS YP_001189174.1 146308709 5110155 complement(4077242..4078738) 1 NC_009439.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 4078738 5110155 Pmen_3694 Pseudomonas mendocina ymp methylmalonate-semialdehyde dehydrogenase YP_001189174.1 4077242 R 399739 CDS YP_001189175.1 146308710 5110156 complement(4078827..4080173) 1 NC_009439.1 catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 4080173 5110156 Pmen_3695 Pseudomonas mendocina ymp beta alanine--pyruvate transaminase YP_001189175.1 4078827 R 399739 CDS YP_001189176.1 146308711 5110157 4080338..4081255 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4081255 5110157 Pmen_3696 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189176.1 4080338 D 399739 CDS YP_001189177.1 146308712 5110158 4081593..4082393 1 NC_009439.1 nucleoside-binding outer membrane protein-like protein 4082393 5110158 Pmen_3697 Pseudomonas mendocina ymp nucleoside-binding outer membrane protein-like protein YP_001189177.1 4081593 D 399739 CDS YP_001189178.1 146308713 5110159 4082467..4083843 1 NC_009439.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; uracil-xanthine permease 4083843 5110159 Pmen_3698 Pseudomonas mendocina ymp uracil-xanthine permease YP_001189178.1 4082467 D 399739 CDS YP_001189179.1 146308714 5110160 4084002..4084664 1 NC_009439.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional regulator YcdC, C-terminal domain protein; TetR family transcriptional regulator 4084664 5110160 Pmen_3699 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001189179.1 4084002 D 399739 CDS YP_001189180.1 146308715 5105695 4084664..4085248 1 NC_009439.1 PFAM: protein of unknown function UPF0029; hypothetical protein 4085248 5105695 Pmen_3700 Pseudomonas mendocina ymp hypothetical protein YP_001189180.1 4084664 D 399739 CDS YP_001189181.1 146308716 5105696 4085245..4085802 1 NC_009439.1 PFAM: protein of unknown function DUF922; hypothetical protein 4085802 5105696 Pmen_3701 Pseudomonas mendocina ymp hypothetical protein YP_001189181.1 4085245 D 399739 CDS YP_001189182.1 146308717 5105697 4085848..4086531 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; short chain dehydrogenase 4086531 5105697 Pmen_3702 Pseudomonas mendocina ymp short chain dehydrogenase YP_001189182.1 4085848 D 399739 CDS YP_001189183.1 146308718 5105698 complement(4086647..4087144) 1 NC_009439.1 hypothetical protein 4087144 5105698 Pmen_3703 Pseudomonas mendocina ymp hypothetical protein YP_001189183.1 4086647 R 399739 CDS YP_001189184.1 146308719 5105699 4087227..4087577 1 NC_009439.1 PFAM: regulatory protein, MerR; MerR family transcriptional regulator 4087577 5105699 Pmen_3704 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001189184.1 4087227 D 399739 CDS YP_001189185.1 146308720 5105700 4087704..4089059 1 NC_009439.1 catalyzes the transformation of hydroxyatrazine to N-isopropylammelide and ethylamine in the atrazine degradation pathway.; hydroxydechloroatrazine ethylaminohydrolase 4089059 5105700 Pmen_3705 Pseudomonas mendocina ymp hydroxydechloroatrazine ethylaminohydrolase YP_001189185.1 4087704 D 399739 CDS YP_001189186.1 146308721 5105701 4089164..4090111 1 NC_009439.1 catalyzes the formation of inosine from adenosine; adenosine deaminase 4090111 5105701 Pmen_3706 Pseudomonas mendocina ymp adenosine deaminase YP_001189186.1 4089164 D 399739 CDS YP_001189187.1 146308722 5105702 complement(4090235..4090717) 1 NC_009439.1 PFAM: protein of unknown function DUF461; hypothetical protein 4090717 5105702 Pmen_3707 Pseudomonas mendocina ymp hypothetical protein YP_001189187.1 4090235 R 399739 CDS YP_001189188.1 146308723 5105703 complement(4090878..4092308) 1 NC_009439.1 hypothetical protein 4092308 5105703 Pmen_3708 Pseudomonas mendocina ymp hypothetical protein YP_001189188.1 4090878 R 399739 CDS YP_001189189.1 146308724 5105704 complement(4092305..4094350) 1 NC_009439.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 4094350 5105704 Pmen_3709 Pseudomonas mendocina ymp TonB-dependent receptor YP_001189189.1 4092305 R 399739 CDS YP_001189190.1 146308725 5105705 complement(4094475..4094861) 1 NC_009439.1 hypothetical protein 4094861 5105705 Pmen_3710 Pseudomonas mendocina ymp hypothetical protein YP_001189190.1 4094475 R 399739 CDS YP_001189191.1 146308726 5105706 complement(4094966..4095880) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4095880 5105706 Pmen_3711 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189191.1 4094966 R 399739 CDS YP_001189192.1 146308727 5105707 4095997..4097013 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 4097013 5105707 Pmen_3712 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001189192.1 4095997 D 399739 CDS YP_001189193.1 146308728 5105708 4097230..4097403 1 NC_009439.1 hypothetical protein 4097403 5105708 Pmen_3713 Pseudomonas mendocina ymp hypothetical protein YP_001189193.1 4097230 D 399739 CDS YP_001189194.1 146308729 5105709 complement(4097583..4098221) 1 NC_009439.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; TetR family transcriptional regulator 4098221 5105709 Pmen_3714 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001189194.1 4097583 R 399739 CDS YP_001189195.1 146308730 5105710 4098402..4099550 1 NC_009439.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 4099550 5105710 Pmen_3715 Pseudomonas mendocina ymp RND family efflux transporter MFP subunit YP_001189195.1 4098402 D 399739 CDS YP_001189196.1 146308731 5105711 4099708..4102851 1 NC_009439.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein 4102851 5105711 Pmen_3716 Pseudomonas mendocina ymp hydrophobe/amphiphile efflux-1 (HAE1) family protein YP_001189196.1 4099708 D 399739 CDS YP_001189197.1 146308732 5105712 4102848..4104281 1 NC_009439.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 4104281 5105712 Pmen_3717 Pseudomonas mendocina ymp RND efflux system outer membrane lipoprotein YP_001189197.1 4102848 D 399739 CDS YP_001189198.1 146308733 5105713 complement(4104410..4105003) 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 4105003 5105713 Pmen_3718 Pseudomonas mendocina ymp HAD family hydrolase YP_001189198.1 4104410 R 399739 CDS YP_001189199.1 146308734 5105714 complement(4105000..4105869) 1 NC_009439.1 TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 4105869 5105714 Pmen_3719 Pseudomonas mendocina ymp acyl-CoA thioesterase II YP_001189199.1 4105000 R 399739 CDS YP_001189200.1 146308735 5105715 complement(4105850..4107472) 1 NC_009439.1 hypothetical protein 4107472 5105715 Pmen_3720 Pseudomonas mendocina ymp hypothetical protein YP_001189200.1 4105850 R 399739 CDS YP_001189201.1 146308736 5105716 complement(4107469..4108029) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4108029 5105716 Pmen_3721 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001189201.1 4107469 R 399739 CDS YP_001189202.1 146308737 5105717 4108088..4109008 1 NC_009439.1 PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein 4109008 5105717 Pmen_3722 Pseudomonas mendocina ymp histone deacetylase superfamily protein YP_001189202.1 4108088 D 399739 CDS YP_001189203.1 146308738 5105718 complement(4109012..4110142) 1 NC_009439.1 PFAM: aminotransferase, class V; class V aminotransferase 4110142 5105718 Pmen_3723 Pseudomonas mendocina ymp class V aminotransferase YP_001189203.1 4109012 R 399739 CDS YP_001189204.1 146308739 5105719 4110256..4111497 1 NC_009439.1 PFAM: HI0933 family protein; hypothetical protein 4111497 5105719 Pmen_3724 Pseudomonas mendocina ymp hypothetical protein YP_001189204.1 4110256 D 399739 CDS YP_001189205.1 146308740 5105720 4111679..4112680 1 NC_009439.1 PFAM: response regulator receiver; CheC, inhibitor of MCP methylation 4112680 5105720 Pmen_3725 Pseudomonas mendocina ymp CheC, inhibitor of MCP methylation YP_001189205.1 4111679 D 399739 CDS YP_001189206.1 146308741 5105721 4112685..4113122 1 NC_009439.1 PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; putative PAS/PAC sensor protein 4113122 5105721 Pmen_3726 Pseudomonas mendocina ymp putative PAS/PAC sensor protein YP_001189206.1 4112685 D 399739 CDS YP_001189207.1 146308742 5105722 4113215..4113577 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4113577 5105722 Pmen_3727 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001189207.1 4113215 D 399739 CDS YP_001189208.1 146308743 5105723 complement(4113621..4114964) 1 NC_009439.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 4114964 5105723 Pmen_3728 Pseudomonas mendocina ymp DEAD/DEAH box helicase YP_001189208.1 4113621 R 399739 CDS YP_001189209.1 146308744 5105724 complement(4115090..4115689) 1 NC_009439.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 4115689 5105724 Pmen_3729 Pseudomonas mendocina ymp DNA polymerase III subunit epsilon YP_001189209.1 4115090 R 399739 CDS YP_001189210.1 146308745 5105725 complement(4115697..4116176) 1 NC_009439.1 PFAM: protein of unknown function DUF88; hypothetical protein 4116176 5105725 Pmen_3730 Pseudomonas mendocina ymp hypothetical protein YP_001189210.1 4115697 R 399739 CDS YP_001189211.1 146308746 5105726 4116278..4116763 1 NC_009439.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 4116763 5105726 Pmen_3731 Pseudomonas mendocina ymp YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001189211.1 4116278 D 399739 CDS YP_001189212.1 146308747 5105727 4116825..4117490 1 NC_009439.1 PFAM: protein of unknown function UPF0259; hypothetical protein 4117490 5105727 Pmen_3732 Pseudomonas mendocina ymp hypothetical protein YP_001189212.1 4116825 D 399739 CDS YP_001189213.1 146308748 5105728 4117525..4117962 1 NC_009439.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4117962 5105728 Pmen_3733 Pseudomonas mendocina ymp glyoxalase/bleomycin resistance protein/dioxygenase YP_001189213.1 4117525 D 399739 CDS YP_001189214.1 146308749 5105729 complement(4117970..4118713) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 4118713 5105729 Pmen_3734 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001189214.1 4117970 R 399739 CDS YP_001189215.1 146308750 5105730 complement(4118713..4119558) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 4119558 5105730 Pmen_3735 Pseudomonas mendocina ymp short chain dehydrogenase YP_001189215.1 4118713 R 399739 CDS YP_001189216.1 146308751 5105731 4119919..4121007 1 NC_009439.1 PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 4121007 5105731 Pmen_3736 Pseudomonas mendocina ymp endonuclease/exonuclease/phosphatase YP_001189216.1 4119919 D 399739 CDS YP_001189217.1 146308752 5105732 4121101..4121835 1 NC_009439.1 hypothetical protein 4121835 5105732 Pmen_3737 Pseudomonas mendocina ymp hypothetical protein YP_001189217.1 4121101 D 399739 CDS YP_001189218.1 146308753 5105733 complement(4121840..4122646) 1 NC_009439.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein 4122646 5105733 Pmen_3738 Pseudomonas mendocina ymp redoxin domain-containing protein YP_001189218.1 4121840 R 399739 CDS YP_001189219.1 146308754 5105734 complement(4122654..4125188) 1 NC_009439.1 TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB 4125188 5105734 Pmen_3739 Pseudomonas mendocina ymp ATP-dependent helicase HrpB YP_001189219.1 4122654 R 399739 CDS YP_001189220.1 146308755 5105735 4125320..4125739 1 NC_009439.1 hypothetical protein 4125739 5105735 Pmen_3740 Pseudomonas mendocina ymp hypothetical protein YP_001189220.1 4125320 D 399739 CDS YP_001189221.1 146308756 5105736 4125744..4126622 1 NC_009439.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 4126622 5105736 Pmen_3741 Pseudomonas mendocina ymp cation diffusion facilitator family transporter YP_001189221.1 4125744 D 399739 CDS YP_001189222.1 146308757 5105737 4126993..4127472 1 NC_009439.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 4127472 5105737 Pmen_3742 Pseudomonas mendocina ymp AsnC family transcriptional regulator YP_001189222.1 4126993 D 399739 CDS YP_001189223.1 146308758 5105738 4127563..4127781 1 NC_009439.1 hypothetical protein 4127781 5105738 Pmen_3743 Pseudomonas mendocina ymp hypothetical protein YP_001189223.1 4127563 D 399739 CDS YP_001189224.1 146308759 5105739 4127862..4128254 1 NC_009439.1 PFAM: globin; globin 4128254 5105739 Pmen_3744 Pseudomonas mendocina ymp globin YP_001189224.1 4127862 D 399739 CDS YP_001189225.1 146308760 5105740 complement(4128460..4129080) 1 NC_009439.1 PFAM: pseudouridine synthase; ribosomal large subunit pseudouridine synthase E 4129080 5105740 Pmen_3745 Pseudomonas mendocina ymp ribosomal large subunit pseudouridine synthase E YP_001189225.1 4128460 R 399739 CDS YP_001189226.1 146308761 5105741 4129205..4130236 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 4130236 5105741 Pmen_3746 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001189226.1 4129205 D 399739 CDS YP_001189227.1 146308762 5105742 4130291..4130743 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4130743 5105742 Pmen_3747 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001189227.1 4130291 D 399739 CDS YP_001189228.1 146308763 5105743 complement(4130740..4132131) 1 NC_009439.1 PFAM: aminotransferase, class V; regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator 4132131 5105743 Pmen_3748 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001189228.1 4130740 R 399739 CDS YP_001189229.1 146308764 5105744 4132161..4133132 1 NC_009439.1 PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; hypothetical protein 4133132 5105744 Pmen_3749 Pseudomonas mendocina ymp hypothetical protein YP_001189229.1 4132161 D 399739 CDS YP_001189230.1 146308765 5105745 complement(4133133..4134605) 1 NC_009439.1 Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 4134605 5105745 Pmen_3750 Pseudomonas mendocina ymp AMP nucleosidase YP_001189230.1 4133133 R 399739 CDS YP_001189231.1 146308766 5105746 4134739..4135476 1 NC_009439.1 hypothetical protein 4135476 5105746 Pmen_3751 Pseudomonas mendocina ymp hypothetical protein YP_001189231.1 4134739 D 399739 CDS YP_001189232.1 146308767 5105747 complement(4135487..4136170) 1 NC_009439.1 hypothetical protein 4136170 5105747 Pmen_3752 Pseudomonas mendocina ymp hypothetical protein YP_001189232.1 4135487 R 399739 CDS YP_001189233.1 146308768 5105748 4136707..4137450 1 NC_009439.1 PFAM: carbonic anhydrase; carbonate dehydratase 4137450 5105748 Pmen_3753 Pseudomonas mendocina ymp carbonate dehydratase YP_001189233.1 4136707 D 399739 CDS YP_001189234.1 146308769 5105749 complement(4139914..4140213) 1 NC_009439.1 TIGRFAM: CRISPR-associated protein Cas2; hypothetical protein 4140213 5105749 Pmen_3754 Pseudomonas mendocina ymp hypothetical protein YP_001189234.1 4139914 R 399739 CDS YP_001189235.1 146308770 5105750 complement(4140213..4141127) 1 NC_009439.1 TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein 4141127 5105750 Pmen_3755 Pseudomonas mendocina ymp CRISPR-associated Cas1 family protein YP_001189235.1 4140213 R 399739 CDS YP_001189236.1 146308771 5105751 complement(4141127..4141741) 1 NC_009439.1 TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein, CT1974; CRISPR-associated Cse3 family protein 4141741 5105751 Pmen_3756 Pseudomonas mendocina ymp CRISPR-associated Cse3 family protein YP_001189236.1 4141127 R 399739 CDS YP_001189237.1 146308772 5105752 complement(4141716..4142378) 1 NC_009439.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; CRISPR-associated Cas5e family protein 4142378 5105752 Pmen_3757 Pseudomonas mendocina ymp CRISPR-associated Cas5e family protein YP_001189237.1 4141716 R 399739 CDS YP_001189238.1 146308773 5105753 complement(4142381..4143535) 1 NC_009439.1 TIGRFAM: CRISPR-associated protein, Cse4 family; CRISPR-associated Cse4 family protein 4143535 5105753 Pmen_3758 Pseudomonas mendocina ymp CRISPR-associated Cse4 family protein YP_001189238.1 4142381 R 399739 CDS YP_001189239.1 146308774 5105754 complement(4143546..4144088) 1 NC_009439.1 TIGRFAM: CRISPR-associated protein, Cse2 family; CRISPR-associated Cse2 family protein 4144088 5105754 Pmen_3759 Pseudomonas mendocina ymp CRISPR-associated Cse2 family protein YP_001189239.1 4143546 R 399739 CDS YP_001189240.1 146308775 5105755 complement(4144085..4145662) 1 NC_009439.1 TIGRFAM: CRISPR-associated protein, Cse1 family; CRISPR-associated Cse1 family protein 4145662 5105755 Pmen_3760 Pseudomonas mendocina ymp CRISPR-associated Cse1 family protein YP_001189240.1 4144085 R 399739 CDS YP_001189241.1 146308776 5105756 4145833..4146123 1 NC_009439.1 hypothetical protein 4146123 5105756 Pmen_3761 Pseudomonas mendocina ymp hypothetical protein YP_001189241.1 4145833 D 399739 CDS YP_001189242.1 146308777 5105757 4146120..4146401 1 NC_009439.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; addiction module antitoxin 4146401 5105757 Pmen_3762 Pseudomonas mendocina ymp addiction module antitoxin YP_001189242.1 4146120 D 399739 CDS YP_001189243.1 146308778 5105758 complement(4146404..4149061) 1 NC_009439.1 TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; CRISPR-associated helicase Cas3 family protein 4149061 5105758 Pmen_3763 Pseudomonas mendocina ymp CRISPR-associated helicase Cas3 family protein YP_001189243.1 4146404 R 399739 CDS YP_001189244.1 146308779 5105759 complement(4150247..4151896) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 4151896 5105759 Pmen_3764 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001189244.1 4150247 R 399739 CDS YP_001189245.1 146308780 5105760 complement(4151893..4152534) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4152534 5105760 Pmen_3765 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001189245.1 4151893 R 399739 CDS YP_001189246.1 146308781 5105761 complement(4152672..4155080) 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; integral membrane sensor hybrid histidine kinase 4155080 5105761 Pmen_3766 Pseudomonas mendocina ymp integral membrane sensor hybrid histidine kinase YP_001189246.1 4152672 R 399739 CDS YP_001189247.1 146308782 5105762 complement(4155318..4156208) 1 NC_009439.1 PFAM: periplasmic binding protein; periplasmic binding protein 4156208 5105762 Pmen_3767 Pseudomonas mendocina ymp periplasmic binding protein YP_001189247.1 4155318 R 399739 CDS YP_001189248.1 146308783 5105763 complement(4156205..4158181) 1 NC_009439.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease 4158181 5105763 Pmen_3768 Pseudomonas mendocina ymp iron-hydroxamate transporter permease YP_001189248.1 4156205 R 399739 CDS YP_001189249.1 146308784 5105764 complement(4158184..4158951) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4158951 5105764 Pmen_3769 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189249.1 4158184 R 399739 CDS YP_001189250.1 146308785 5105765 complement(4158945..4159691) 1 NC_009439.1 hypothetical protein 4159691 5105765 Pmen_3770 Pseudomonas mendocina ymp hypothetical protein YP_001189250.1 4158945 R 399739 CDS YP_001189251.1 146308786 5105766 complement(4159782..4160942) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4160942 5105766 Pmen_3771 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001189251.1 4159782 R 399739 CDS YP_001189252.1 146308787 5105767 4161086..4161883 1 NC_009439.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 4161883 5105767 Pmen_3772 Pseudomonas mendocina ymp phosphomethylpyrimidine kinase YP_001189252.1 4161086 D 399739 CDS YP_001189253.1 146308788 5105768 4161880..4162509 1 NC_009439.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 4162509 thiE 5105768 thiE Pseudomonas mendocina ymp thiamine-phosphate pyrophosphorylase YP_001189253.1 4161880 D 399739 CDS YP_001189254.1 146308789 5105769 4162532..4163821 1 NC_009439.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 4163821 5105769 Pmen_3774 Pseudomonas mendocina ymp glutamate-1-semialdehyde aminotransferase YP_001189254.1 4162532 D 399739 CDS YP_001189255.1 146308790 5105770 4163821..4164453 1 NC_009439.1 hypothetical protein 4164453 5105770 Pmen_3775 Pseudomonas mendocina ymp hypothetical protein YP_001189255.1 4163821 D 399739 CDS YP_001189256.1 146308791 5105771 4164561..4165109 1 NC_009439.1 PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein 4165109 5105771 Pmen_3776 Pseudomonas mendocina ymp Sel1 domain-containing protein YP_001189256.1 4164561 D 399739 CDS YP_001189257.1 146308792 5105772 complement(4165181..4165504) 1 NC_009439.1 hypothetical protein 4165504 5105772 Pmen_3777 Pseudomonas mendocina ymp hypothetical protein YP_001189257.1 4165181 R 399739 CDS YP_001189258.1 146308793 5105773 4165636..4166460 1 NC_009439.1 hypothetical protein 4166460 5105773 Pmen_3778 Pseudomonas mendocina ymp hypothetical protein YP_001189258.1 4165636 D 399739 CDS YP_001189259.1 146308794 5106010 4166581..4167960 1 NC_009439.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 4167960 5106010 Pmen_3779 Pseudomonas mendocina ymp (dimethylallyl)adenosine tRNA methylthiotransferase YP_001189259.1 4166581 D 399739 CDS YP_001189260.1 146308795 5106011 4167987..4169039 1 NC_009439.1 PFAM: PhoH family protein; PhoH family protein 4169039 5106011 Pmen_3780 Pseudomonas mendocina ymp PhoH family protein YP_001189260.1 4167987 D 399739 CDS YP_001189261.1 146308796 5106012 4169032..4169487 1 NC_009439.1 PFAM: protein of unknown function UPF0054; putative metalloprotease 4169487 5106012 Pmen_3781 Pseudomonas mendocina ymp putative metalloprotease YP_001189261.1 4169032 D 399739 CDS YP_001189262.1 146308797 5106013 4169519..4170358 1 NC_009439.1 PFAM: CBS domain containing protein; transporter-associated region; hypothetical protein 4170358 5106013 Pmen_3782 Pseudomonas mendocina ymp hypothetical protein YP_001189262.1 4169519 D 399739 CDS YP_001189263.1 146308798 5106014 4170474..4171997 1 NC_009439.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 4171997 lnt 5106014 lnt Pseudomonas mendocina ymp apolipoprotein N-acyltransferase YP_001189263.1 4170474 D 399739 CDS YP_001189264.1 146308799 5106015 complement(4172152..4172922) 1 NC_009439.1 PFAM: protein of unknown function DUF218; hypothetical protein 4172922 5106015 Pmen_3784 Pseudomonas mendocina ymp hypothetical protein YP_001189264.1 4172152 R 399739 CDS YP_001189265.1 146308800 5106016 complement(4172946..4173374) 1 NC_009439.1 hypothetical protein 4173374 5106016 Pmen_3785 Pseudomonas mendocina ymp hypothetical protein YP_001189265.1 4172946 R 399739 CDS YP_001189266.1 146308801 5106017 4173445..4176165 1 NC_009439.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 4176165 leuS 5106017 leuS Pseudomonas mendocina ymp leucyl-tRNA synthetase YP_001189266.1 4173445 D 399739 CDS YP_001189267.1 146308802 5106018 4176220..4176831 1 NC_009439.1 PFAM: Rare lipoprotein B; rare lipoprotein B 4176831 5106018 Pmen_3787 Pseudomonas mendocina ymp rare lipoprotein B YP_001189267.1 4176220 D 399739 CDS YP_001189268.1 146308803 5106019 4176887..4177915 1 NC_009439.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 4177915 holA 5106019 holA Pseudomonas mendocina ymp DNA polymerase III subunit delta YP_001189268.1 4176887 D 399739 CDS YP_001189269.1 146308804 5106020 4178138..4178332 1 NC_009439.1 PFAM: protein of unknown function DUF331; hypothetical protein 4178332 5106020 Pmen_3789 Pseudomonas mendocina ymp hypothetical protein YP_001189269.1 4178138 D 399739 CDS YP_001189270.1 146308805 5106021 4178366..4179622 1 NC_009439.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; lytic murein transglycosylase 4179622 5106021 Pmen_3790 Pseudomonas mendocina ymp lytic murein transglycosylase YP_001189270.1 4178366 D 399739 CDS YP_001189271.1 146308806 5106022 4179786..4180838 1 NC_009439.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 4180838 5106022 Pmen_3791 Pseudomonas mendocina ymp lipoyl synthase YP_001189271.1 4179786 D 399739 CDS YP_001189272.1 146308807 5106023 complement(4180972..4181589) 1 NC_009439.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 4181589 5106023 Pmen_3792 Pseudomonas mendocina ymp lipoate-protein ligase B YP_001189272.1 4180972 R 399739 CDS YP_001189273.1 146308808 5106024 complement(4181595..4181873) 1 NC_009439.1 PFAM: protein of unknown function DUF493; hypothetical protein 4181873 5106024 Pmen_3793 Pseudomonas mendocina ymp hypothetical protein YP_001189273.1 4181595 R 399739 CDS YP_001189274.1 146308809 5106025 complement(4181938..4183098) 1 NC_009439.1 PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; serine-type D-Ala-D-Ala carboxypeptidase 4183098 5106025 Pmen_3794 Pseudomonas mendocina ymp serine-type D-Ala-D-Ala carboxypeptidase YP_001189274.1 4181938 R 399739 CDS YP_001189275.1 146308810 5106026 complement(4183212..4184225) 1 NC_009439.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; rare lipoprotein A 4184225 5106026 Pmen_3795 Pseudomonas mendocina ymp rare lipoprotein A YP_001189275.1 4183212 R 399739 CDS YP_001189276.1 146308811 5106027 complement(4184222..4185232) 1 NC_009439.1 TIGRFAM: lytic murein transglycosylase B; lytic murein transglycosylase B 4185232 5106027 Pmen_3796 Pseudomonas mendocina ymp lytic murein transglycosylase B YP_001189276.1 4184222 R 399739 CDS YP_001189277.1 146308812 5106028 complement(4185250..4186395) 1 NC_009439.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA 4186395 5106028 Pmen_3797 Pseudomonas mendocina ymp rod shape-determining protein RodA YP_001189277.1 4185250 R 399739 CDS YP_001189278.1 146308813 5106029 complement(4186392..4188284) 1 NC_009439.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 4188284 5106029 Pmen_3798 Pseudomonas mendocina ymp peptidoglycan glycosyltransferase YP_001189278.1 4186392 R 399739 CDS YP_001189279.1 146308814 5106030 complement(4188291..4188758) 1 NC_009439.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 4188758 5106030 Pmen_3799 Pseudomonas mendocina ymp rRNA large subunit methyltransferase YP_001189279.1 4188291 R 399739 CDS YP_001189280.1 146308815 5106031 complement(4188768..4189136) 1 NC_009439.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap family protein 4189136 5106031 Pmen_3800 Pseudomonas mendocina ymp iojap family protein YP_001189280.1 4188768 R 399739 CDS YP_001189281.1 146308816 5106032 complement(4189186..4189845) 1 NC_009439.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 4189845 nadD 5106032 nadD Pseudomonas mendocina ymp nicotinic acid mononucleotide adenylyltransferase YP_001189281.1 4189186 R 399739 CDS YP_001189282.1 146308817 5106033 complement(4189846..4191111) 1 NC_009439.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 4191111 proA 5106033 proA Pseudomonas mendocina ymp gamma-glutamyl phosphate reductase YP_001189282.1 4189846 R 399739 CDS YP_001189283.1 146308818 5106034 4191518..4192747 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4192747 5106034 Pmen_3803 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001189283.1 4191518 D 399739 CDS YP_001189284.1 146308819 5106035 complement(4192780..4193634) 1 NC_009439.1 polyketide biosynthesis O-methyltransferase-like protein 4193634 5106035 Pmen_3804 Pseudomonas mendocina ymp polyketide biosynthesis O-methyltransferase-like protein YP_001189284.1 4192780 R 399739 CDS YP_001189285.1 146308820 5106036 4193689..4194417 1 NC_009439.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair; 3-methyladenine DNA glycosylase 4194417 5106036 Pmen_3805 Pseudomonas mendocina ymp 3-methyladenine DNA glycosylase YP_001189285.1 4193689 D 399739 CDS YP_001189286.1 146308821 5106037 4194414..4195730 1 NC_009439.1 PFAM: phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4195730 5106037 Pmen_3806 Pseudomonas mendocina ymp PA-phosphatase-like phosphoesterase YP_001189286.1 4194414 D 399739 CDS YP_001189287.1 146308822 5106038 complement(4195740..4196324) 1 NC_009439.1 PFAM: peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 4196324 5106038 Pmen_3807 Pseudomonas mendocina ymp peptidase S16, lon domain-containing protein YP_001189287.1 4195740 R 399739 CDS YP_001189288.1 146308823 5106039 complement(4196332..4197048) 1 NC_009439.1 PFAM: LrgB family protein; LrgB family protein 4197048 5106039 Pmen_3808 Pseudomonas mendocina ymp LrgB family protein YP_001189288.1 4196332 R 399739 CDS YP_001189289.1 146308824 5106040 complement(4197045..4197404) 1 NC_009439.1 PFAM: LrgA family protein; LrgA family protein 4197404 5106040 Pmen_3809 Pseudomonas mendocina ymp LrgA family protein YP_001189289.1 4197045 R 399739 CDS YP_001189290.1 146308825 5106041 4197655..4198110 1 NC_009439.1 PFAM: MaoC domain protein dehydratase; dehydratase 4198110 5106041 Pmen_3810 Pseudomonas mendocina ymp dehydratase YP_001189290.1 4197655 D 399739 CDS YP_001189291.1 146308826 5106042 4198244..4199977 1 NC_009439.1 PFAM: MORN repeat-containing protein; MORN repeat-containing protein 4199977 5106042 Pmen_3811 Pseudomonas mendocina ymp MORN repeat-containing protein YP_001189291.1 4198244 D 399739 CDS YP_001189292.1 146308827 5106043 4200008..4200649 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 4200649 5106043 Pmen_3812 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001189292.1 4200008 D 399739 CDS YP_001189293.1 146308828 5106044 4200666..4201007 1 NC_009439.1 hypothetical protein 4201007 5106044 Pmen_3813 Pseudomonas mendocina ymp hypothetical protein YP_001189293.1 4200666 D 399739 CDS YP_001189294.1 146308829 5106045 4201011..4201622 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 4201622 5106045 Pmen_3814 Pseudomonas mendocina ymp type 11 methyltransferase YP_001189294.1 4201011 D 399739 CDS YP_001189295.1 146308830 5106046 complement(4201748..4202386) 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; response regulator receiver protein 4202386 5106046 Pmen_3815 Pseudomonas mendocina ymp response regulator receiver protein YP_001189295.1 4201748 R 399739 CDS YP_001189296.1 146308831 5106047 complement(4202425..4204335) 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 4204335 5106047 Pmen_3816 Pseudomonas mendocina ymp PAS/PAC sensor signal transduction histidine kinase YP_001189296.1 4202425 R 399739 CDS YP_001189297.1 146308832 5106048 4204477..4206096 1 NC_009439.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 4206096 5106048 Pmen_3817 Pseudomonas mendocina ymp acyl-CoA synthetase YP_001189297.1 4204477 D 399739 CDS YP_001189298.1 146308833 5106049 4206207..4207580 1 NC_009439.1 hypothetical protein 4207580 5106049 Pmen_3818 Pseudomonas mendocina ymp hypothetical protein YP_001189298.1 4206207 D 399739 CDS YP_001189299.1 146308834 5106050 4207640..4209412 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 4209412 5106050 Pmen_3819 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001189299.1 4207640 D 399739 CDS YP_001189300.1 146308835 5106051 4209667..4210845 1 NC_009439.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 4210845 5106051 Pmen_3820 Pseudomonas mendocina ymp acetyl-CoA acetyltransferase YP_001189300.1 4209667 D 399739 CDS YP_001189301.1 146308836 5106052 4210884..4211750 1 NC_009439.1 PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 4211750 5106052 Pmen_3821 Pseudomonas mendocina ymp beta-lactamase domain-containing protein YP_001189301.1 4210884 D 399739 CDS YP_001189302.1 146308837 5106053 4211905..4212384 1 NC_009439.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein 4212384 5106053 Pmen_3822 Pseudomonas mendocina ymp YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001189302.1 4211905 D 399739 CDS YP_001189303.1 146308838 5106054 complement(4212486..4212773) 1 NC_009439.1 PFAM: protein of unknown function DUF1375; hypothetical protein 4212773 5106054 Pmen_3823 Pseudomonas mendocina ymp hypothetical protein YP_001189303.1 4212486 R 399739 CDS YP_001189304.1 146308839 5106055 complement(4212770..4213060) 1 NC_009439.1 hypothetical protein 4213060 5106055 Pmen_3824 Pseudomonas mendocina ymp hypothetical protein YP_001189304.1 4212770 R 399739 CDS YP_001189305.1 146308840 5106056 complement(4213069..4213698) 1 NC_009439.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; aromatic acid decarboxylase 4213698 5106056 Pmen_3825 Pseudomonas mendocina ymp aromatic acid decarboxylase YP_001189305.1 4213069 R 399739 CDS YP_001189306.1 146308841 5106057 complement(4213699..4215054) 1 NC_009439.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramate 4215054 5106057 Pmen_3826 Pseudomonas mendocina ymp UDP-N-acetylmuramate YP_001189306.1 4213699 R 399739 CDS YP_001189307.1 146308842 5106058 4215438..4215893 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4215893 5106058 Pmen_3827 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001189307.1 4215438 D 399739 CDS YP_001189308.1 146308843 5106059 4215988..4216815 1 NC_009439.1 PFAM: protein of unknown function DUF980; hypothetical protein 4216815 5106059 Pmen_3828 Pseudomonas mendocina ymp hypothetical protein YP_001189308.1 4215988 D 399739 CDS YP_001189309.1 146308844 5106060 4216893..4217420 1 NC_009439.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 4217420 5106060 Pmen_3829 Pseudomonas mendocina ymp inorganic pyrophosphatase YP_001189309.1 4216893 D 399739 CDS YP_001189310.1 146308845 5106061 4217716..4218750 1 NC_009439.1 hypothetical protein 4218750 5106061 Pmen_3830 Pseudomonas mendocina ymp hypothetical protein YP_001189310.1 4217716 D 399739 CDS YP_001189311.1 146308846 5107292 4219034..4220608 1 NC_009439.1 PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4220608 5107292 Pmen_3832 Pseudomonas mendocina ymp gamma-glutamyltransferase YP_001189311.1 4219034 D 399739 CDS YP_001189312.1 146308847 5106063 4220633..4221361 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 4221361 5106063 Pmen_3833 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001189312.1 4220633 D 399739 CDS YP_001189313.1 146308848 5106064 complement(4221358..4222587) 1 NC_009439.1 PFAM: amidohydrolase; Amidohydrolase 3; amidohydrolase 3 4222587 5106064 Pmen_3834 Pseudomonas mendocina ymp amidohydrolase 3 YP_001189313.1 4221358 R 399739 CDS YP_001189314.1 146308849 5106065 complement(4222584..4225076) 1 NC_009439.1 PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4225076 5106065 Pmen_3835 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189314.1 4222584 R 399739 CDS YP_001189315.1 146308850 5106066 complement(4225073..4225942) 1 NC_009439.1 PFAM: inner-membrane translocator; inner-membrane translocator 4225942 5106066 Pmen_3836 Pseudomonas mendocina ymp inner-membrane translocator YP_001189315.1 4225073 R 399739 CDS YP_001189316.1 146308851 5106067 complement(4225986..4227173) 1 NC_009439.1 PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 4227173 5106067 Pmen_3837 Pseudomonas mendocina ymp extracellular ligand-binding receptor YP_001189316.1 4225986 R 399739 CDS YP_001189317.1 146308852 5106068 4227338..4227736 1 NC_009439.1 hypothetical protein 4227736 5106068 Pmen_3838 Pseudomonas mendocina ymp hypothetical protein YP_001189317.1 4227338 D 399739 CDS YP_001189318.1 146308853 5106069 4227821..4228591 1 NC_009439.1 PFAM: protein of unknown function DUF81; hypothetical protein 4228591 5106069 Pmen_3839 Pseudomonas mendocina ymp hypothetical protein YP_001189318.1 4227821 D 399739 CDS YP_001189319.1 146308854 5106070 4228607..4229005 1 NC_009439.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 4229005 5106070 Pmen_3840 Pseudomonas mendocina ymp exodeoxyribonuclease VII small subunit YP_001189319.1 4228607 D 399739 CDS YP_001189320.1 146308855 5106071 4229002..4229889 1 NC_009439.1 PFAM: Polyprenyl synthetase; farnesyl-diphosphate synthase 4229889 5106071 Pmen_3841 Pseudomonas mendocina ymp farnesyl-diphosphate synthase YP_001189320.1 4229002 D 399739 CDS YP_001189321.1 146308856 5106072 4230034..4233306 1 NC_009439.1 PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; pyruvate carboxylase., propionyl-CoA carboxylase 4233306 5106072 Pmen_3842 Pseudomonas mendocina ymp pyruvate carboxylase., propionyl-CoA carboxylase YP_001189321.1 4230034 D 399739 CDS YP_001189322.1 146308857 5106073 4233317..4234267 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4234267 5106073 Pmen_3843 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001189322.1 4233317 D 399739 CDS YP_001189323.1 146308858 5106074 4234350..4236245 1 NC_009439.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 4236245 5106074 Pmen_3844 Pseudomonas mendocina ymp 1-deoxy-D-xylulose-5-phosphate synthase YP_001189323.1 4234350 D 399739 CDS YP_001189324.1 146308859 5106075 4236609..4238495 1 NC_009439.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor, plug 4238495 5106075 Pmen_3845 Pseudomonas mendocina ymp TonB-dependent receptor, plug YP_001189324.1 4236609 D 399739 CDS YP_001189325.1 146308860 5106076 complement(4238561..4239355) 1 NC_009439.1 PFAM: periplasmic binding protein; periplasmic binding protein 4239355 5106076 Pmen_3846 Pseudomonas mendocina ymp periplasmic binding protein YP_001189325.1 4238561 R 399739 CDS YP_001189326.1 146308861 5106077 complement(4239357..4239770) 1 NC_009439.1 hypothetical protein 4239770 5106077 Pmen_3847 Pseudomonas mendocina ymp hypothetical protein YP_001189326.1 4239357 R 399739 CDS YP_001189327.1 146308862 5106078 complement(4239767..4240426) 1 NC_009439.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 4240426 ribA 5106078 ribA Pseudomonas mendocina ymp GTP cyclohydrolase II YP_001189327.1 4239767 R 399739 CDS YP_001189328.1 146308863 5106079 complement(4240499..4241143) 1 NC_009439.1 aspartyl protease-like protein 4241143 5106079 Pmen_3849 Pseudomonas mendocina ymp aspartyl protease-like protein YP_001189328.1 4240499 R 399739 CDS YP_001189329.1 146308864 5106080 complement(4241162..4241932) 1 NC_009439.1 hypothetical protein 4241932 5106080 Pmen_3850 Pseudomonas mendocina ymp hypothetical protein YP_001189329.1 4241162 R 399739 CDS YP_001189330.1 146308865 5106081 complement(4241910..4242443) 1 NC_009439.1 PFAM: phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 4242443 5106081 Pmen_3851 Pseudomonas mendocina ymp phosphatidylglycerophosphatase YP_001189330.1 4241910 R 399739 CDS YP_001189331.1 146308866 5106082 complement(4242453..4243406) 1 NC_009439.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 4243406 5106082 Pmen_3852 Pseudomonas mendocina ymp thiamine monophosphate kinase YP_001189331.1 4242453 R 399739 CDS YP_001189332.1 146308867 5106083 complement(4243403..4243882) 1 NC_009439.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 4243882 nusB 5106083 nusB Pseudomonas mendocina ymp transcription antitermination protein NusB YP_001189332.1 4243403 R 399739 CDS YP_001189333.1 146308868 5106084 complement(4243879..4244355) 1 NC_009439.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 4244355 ribH 5106084 ribH Pseudomonas mendocina ymp 6,7-dimethyl-8-ribityllumazine synthase YP_001189333.1 4243879 R 399739 CDS YP_001189334.1 146308869 5106085 complement(4244624..4245703) 1 NC_009439.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 4245703 5106085 Pmen_3855 Pseudomonas mendocina ymp bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_001189334.1 4244624 R 399739 CDS YP_001189335.1 146308870 5106086 complement(4245716..4246378) 1 NC_009439.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 4246378 5106086 Pmen_3856 Pseudomonas mendocina ymp riboflavin synthase subunit alpha YP_001189335.1 4245716 R 399739 CDS YP_001189336.1 146308871 5106087 complement(4246834..4247949) 1 NC_009439.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 4247949 5106087 Pmen_3857 Pseudomonas mendocina ymp diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_001189336.1 4246834 R 399739 CDS YP_001189337.1 146308872 5106088 complement(4247946..4248413) 1 NC_009439.1 PFAM: ATP-cone domain protein; transcriptional regulator NrdR 4248413 nrdR 5106088 nrdR Pseudomonas mendocina ymp transcriptional regulator NrdR YP_001189337.1 4247946 R 399739 CDS YP_001189338.1 146308873 5106393 4248525..4248977 1 NC_009439.1 hypothetical protein 4248977 5106393 Pmen_3859 Pseudomonas mendocina ymp hypothetical protein YP_001189338.1 4248525 D 399739 CDS YP_001189339.1 146308874 5106394 4248974..4249633 1 NC_009439.1 PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; type 12 methyltransferase 4249633 5106394 Pmen_3860 Pseudomonas mendocina ymp type 12 methyltransferase YP_001189339.1 4248974 D 399739 CDS YP_001189340.1 146308875 5106395 4249688..4250560 1 NC_009439.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 4250560 5106395 Pmen_3861 Pseudomonas mendocina ymp thioredoxin YP_001189340.1 4249688 D 399739 CDS YP_001189341.1 146308876 5106396 complement(4250682..4251020) 1 NC_009439.1 hypothetical protein 4251020 5106396 Pmen_3862 Pseudomonas mendocina ymp hypothetical protein YP_001189341.1 4250682 R 399739 CDS YP_001189342.1 146308877 5106397 4251134..4251712 1 NC_009439.1 hypothetical protein 4251712 5106397 Pmen_3863 Pseudomonas mendocina ymp hypothetical protein YP_001189342.1 4251134 D 399739 CDS YP_001189343.1 146308878 5106398 4251812..4252519 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4252519 5106398 Pmen_3864 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189343.1 4251812 D 399739 CDS YP_001189344.1 146308879 5106399 4252521..4253786 1 NC_009439.1 PFAM: protein of unknown function DUF214; hypothetical protein 4253786 5106399 Pmen_3865 Pseudomonas mendocina ymp hypothetical protein YP_001189344.1 4252521 D 399739 CDS YP_001189345.1 146308880 5106400 4253845..4254366 1 NC_009439.1 hypothetical protein 4254366 5106400 Pmen_3866 Pseudomonas mendocina ymp hypothetical protein YP_001189345.1 4253845 D 399739 CDS YP_001189346.1 146308881 5106401 complement(4254600..4255697) 1 NC_009439.1 hypothetical protein 4255697 5106401 Pmen_3867 Pseudomonas mendocina ymp hypothetical protein YP_001189346.1 4254600 R 399739 CDS YP_001189347.1 146308882 5106402 complement(4255700..4256383) 1 NC_009439.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; TonB family protein 4256383 5106402 Pmen_3868 Pseudomonas mendocina ymp TonB family protein YP_001189347.1 4255700 R 399739 CDS YP_001189348.1 146308883 5106403 complement(4256383..4256793) 1 NC_009439.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4256793 5106403 Pmen_3869 Pseudomonas mendocina ymp biopolymer transport protein ExbD/TolR YP_001189348.1 4256383 R 399739 CDS YP_001189349.1 146308884 5106404 complement(4256805..4257353) 1 NC_009439.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4257353 5106404 Pmen_3870 Pseudomonas mendocina ymp MotA/TolQ/ExbB proton channel YP_001189349.1 4256805 R 399739 CDS YP_001189350.1 146308885 5106405 complement(4257346..4258695) 1 NC_009439.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4258695 5106405 Pmen_3871 Pseudomonas mendocina ymp MotA/TolQ/ExbB proton channel YP_001189350.1 4257346 R 399739 CDS YP_001189351.1 146308886 5106406 complement(4258692..4259465) 1 NC_009439.1 hypothetical protein 4259465 5106406 Pmen_3872 Pseudomonas mendocina ymp hypothetical protein YP_001189351.1 4258692 R 399739 CDS YP_001189352.1 146308887 5106407 4259658..4260341 1 NC_009439.1 PFAM: OmpW family protein; OmpW family protein 4260341 5106407 Pmen_3873 Pseudomonas mendocina ymp OmpW family protein YP_001189352.1 4259658 D 399739 CDS YP_001189353.1 146308888 5106408 complement(4260573..4261493) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 4261493 5106408 Pmen_3874 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001189353.1 4260573 R 399739 CDS YP_001189354.1 146308889 5106409 complement(4261486..4262370) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 4262370 5106409 Pmen_3875 Pseudomonas mendocina ymp dTDP-4-dehydrorhamnose reductase YP_001189354.1 4261486 R 399739 CDS YP_001189355.1 146308890 5106410 complement(4262389..4262877) 1 NC_009439.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein 4262877 5106410 Pmen_3876 Pseudomonas mendocina ymp single-strand binding protein YP_001189355.1 4262389 R 399739 CDS YP_001189356.1 146308891 5106411 complement(4262887..4264281) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4264281 5106411 Pmen_3877 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001189356.1 4262887 R 399739 CDS YP_001189357.1 146308892 5106412 4264416..4267256 1 NC_009439.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 4267256 uvrA 5106412 uvrA Pseudomonas mendocina ymp excinuclease ABC subunit A YP_001189357.1 4264416 D 399739 CDS YP_001189358.1 146308893 5106413 4267356..4268624 1 NC_009439.1 PFAM: peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 4268624 5106413 Pmen_3879 Pseudomonas mendocina ymp peptidase M14, carboxypeptidase A YP_001189358.1 4267356 D 399739 CDS YP_001189359.1 146308894 5106414 complement(4268779..4269243) 1 NC_009439.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; bacterioferritin 4269243 5106414 Pmen_3880 Pseudomonas mendocina ymp bacterioferritin YP_001189359.1 4268779 R 399739 CDS YP_001189360.1 146308895 5106415 complement(4269361..4271511) 1 NC_009439.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 4271511 5106415 Pmen_3881 Pseudomonas mendocina ymp catalase/peroxidase HPI YP_001189360.1 4269361 R 399739 CDS YP_001189361.1 146308896 5106416 complement(4271694..4273073) 1 NC_009439.1 PFAM: Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 4273073 5106416 Pmen_3882 Pseudomonas mendocina ymp Na+/H+ antiporter NhaC YP_001189361.1 4271694 R 399739 CDS YP_001189362.1 146308897 5106417 complement(4273274..4273660) 1 NC_009439.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 4273660 rplQ 5106417 rplQ Pseudomonas mendocina ymp 50S ribosomal protein L17 YP_001189362.1 4273274 R 399739 CDS YP_001189363.1 146308898 5106418 complement(4273705..4274706) 1 NC_009439.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 4274706 5106418 Pmen_3884 Pseudomonas mendocina ymp DNA-directed RNA polymerase subunit alpha YP_001189363.1 4273705 R 399739 CDS YP_001189364.1 146308899 5106419 complement(4274729..4275349) 1 NC_009439.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 4275349 rpsD 5106419 rpsD Pseudomonas mendocina ymp 30S ribosomal protein S4 YP_001189364.1 4274729 R 399739 CDS YP_001189365.1 146308900 5106420 complement(4275367..4275756) 1 NC_009439.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 4275756 5106420 Pmen_3886 Pseudomonas mendocina ymp 30S ribosomal protein S11 YP_001189365.1 4275367 R 399739 CDS YP_001189366.1 146308901 5106421 complement(4275787..4276143) 1 NC_009439.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 4276143 rpsM 5106421 rpsM Pseudomonas mendocina ymp 30S ribosomal protein S13 YP_001189366.1 4275787 R 399739 CDS YP_001189367.1 146308902 5106422 complement(4276277..4276393) 1 NC_009439.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 4276393 rpmJ 5106422 rpmJ Pseudomonas mendocina ymp 50S ribosomal protein L36 YP_001189367.1 4276277 R 399739 CDS YP_001189368.1 146308903 5106423 complement(4276422..4277750) 1 NC_009439.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 4277750 secY 5106423 secY Pseudomonas mendocina ymp preprotein translocase subunit SecY YP_001189368.1 4276422 R 399739 CDS YP_001189369.1 146308904 5106424 complement(4277751..4278182) 1 NC_009439.1 late assembly protein; 50S ribosomal protein L15 4278182 rplO 5106424 rplO Pseudomonas mendocina ymp 50S ribosomal protein L15 YP_001189369.1 4277751 R 399739 CDS YP_001189370.1 146308905 5106425 complement(4278185..4278364) 1 NC_009439.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 4278364 rpmD 5106425 rpmD Pseudomonas mendocina ymp 50S ribosomal protein L30 YP_001189370.1 4278185 R 399739 CDS YP_001189371.1 146308906 5106426 complement(4278367..4278867) 1 NC_009439.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 4278867 rpsE 5106426 rpsE Pseudomonas mendocina ymp 30S ribosomal protein S5 YP_001189371.1 4278367 R 399739 CDS YP_001189372.1 146308907 5106427 complement(4278871..4279221) 1 NC_009439.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 4279221 rplR 5106427 rplR Pseudomonas mendocina ymp 50S ribosomal protein L18 YP_001189372.1 4278871 R 399739 CDS YP_001189373.1 146308908 5106428 complement(4279233..4279766) 1 NC_009439.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 4279766 rplF 5106428 rplF Pseudomonas mendocina ymp 50S ribosomal protein L6 YP_001189373.1 4279233 R 399739 CDS YP_001189374.1 146308909 5106429 complement(4279779..4280171) 1 NC_009439.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 4280171 rpsH 5106429 rpsH Pseudomonas mendocina ymp 30S ribosomal protein S8 YP_001189374.1 4279779 R 399739 CDS YP_001189375.1 146308910 5106430 complement(4280364..4280669) 1 NC_009439.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 4280669 rpsN 5106430 rpsN Pseudomonas mendocina ymp 30S ribosomal protein S14 YP_001189375.1 4280364 R 399739 CDS YP_001189376.1 146308911 5106431 complement(4280685..4281224) 1 NC_009439.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 4281224 rplE 5106431 rplE Pseudomonas mendocina ymp 50S ribosomal protein L5 YP_001189376.1 4280685 R 399739 CDS YP_001189377.1 146308912 5106432 complement(4281244..4281558) 1 NC_009439.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 4281558 rplX 5106432 rplX Pseudomonas mendocina ymp 50S ribosomal protein L24 YP_001189377.1 4281244 R 399739 CDS YP_001189378.1 146308913 5106433 complement(4281570..4281938) 1 NC_009439.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 4281938 rplN 5106433 rplN Pseudomonas mendocina ymp 50S ribosomal protein L14 YP_001189378.1 4281570 R 399739 CDS YP_001189379.1 146308914 5106434 complement(4281962..4282228) 1 NC_009439.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 4282228 rpsQ 5106434 rpsQ Pseudomonas mendocina ymp 30S ribosomal protein S17 YP_001189379.1 4281962 R 399739 CDS YP_001189380.1 146308915 5106435 complement(4282231..4282422) 1 NC_009439.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 4282422 5106435 Pmen_3901 Pseudomonas mendocina ymp 50S ribosomal protein L29 YP_001189380.1 4282231 R 399739 CDS YP_001189381.1 146308916 5106436 complement(4282422..4282835) 1 NC_009439.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 4282835 rplP 5106436 rplP Pseudomonas mendocina ymp 50S ribosomal protein L16 YP_001189381.1 4282422 R 399739 CDS YP_001189382.1 146308917 5106437 complement(4282848..4283534) 1 NC_009439.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 4283534 rpsC 5106437 rpsC Pseudomonas mendocina ymp 30S ribosomal protein S3 YP_001189382.1 4282848 R 399739 CDS YP_001189383.1 146308918 5106438 complement(4283548..4283880) 1 NC_009439.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 4283880 rplV 5106438 rplV Pseudomonas mendocina ymp 50S ribosomal protein L22 YP_001189383.1 4283548 R 399739 CDS YP_001189384.1 146308919 5106439 complement(4283892..4284167) 1 NC_009439.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 4284167 rpsS 5106439 rpsS Pseudomonas mendocina ymp 30S ribosomal protein S19 YP_001189384.1 4283892 R 399739 CDS YP_001189385.1 146308920 5106440 complement(4284184..4285008) 1 NC_009439.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 4285008 rplB 5106440 rplB Pseudomonas mendocina ymp 50S ribosomal protein L2 YP_001189385.1 4284184 R 399739 CDS YP_001189386.1 146308921 5106441 complement(4285023..4285322) 1 NC_009439.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 4285322 rplW 5106441 rplW Pseudomonas mendocina ymp 50S ribosomal protein L23 YP_001189386.1 4285023 R 399739 CDS YP_001189387.1 146308922 5106442 complement(4285319..4285921) 1 NC_009439.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 4285921 rplD 5106442 rplD Pseudomonas mendocina ymp 50S ribosomal protein L4 YP_001189387.1 4285319 R 399739 CDS YP_001189388.1 146308923 5106443 complement(4285936..4286565) 1 NC_009439.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 4286565 rplC 5106443 rplC Pseudomonas mendocina ymp 50S ribosomal protein L3 YP_001189388.1 4285936 R 399739 CDS YP_001189389.1 146308924 5106444 complement(4286649..4286960) 1 NC_009439.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 4286960 rpsJ 5106444 rpsJ Pseudomonas mendocina ymp 30S ribosomal protein S10 YP_001189389.1 4286649 R 399739 CDS YP_001189390.1 146308925 5106445 complement(4287116..4288309) 1 NC_009439.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4288309 5106445 Pmen_3911 Pseudomonas mendocina ymp elongation factor Tu YP_001189390.1 4287116 R 399739 CDS YP_001189391.1 146308926 5106446 complement(4288340..4290487) 1 NC_009439.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4290487 5106446 Pmen_3912 Pseudomonas mendocina ymp elongation factor G YP_001189391.1 4288340 R 399739 CDS YP_001189392.1 146308927 5106447 complement(4290518..4290988) 1 NC_009439.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 4290988 5106447 Pmen_3913 Pseudomonas mendocina ymp 30S ribosomal protein S7 YP_001189392.1 4290518 R 399739 CDS YP_001189393.1 146308928 5106448 complement(4291093..4291464) 1 NC_009439.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 4291464 rpsL 5106448 rpsL Pseudomonas mendocina ymp 30S ribosomal protein S12 YP_001189393.1 4291093 R 399739 CDS YP_001189394.1 146308929 5106449 complement(4291611..4295810) 1 NC_009439.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4295810 5106449 Pmen_3915 Pseudomonas mendocina ymp DNA-directed RNA polymerase subunit beta' YP_001189394.1 4291611 R 399739 CDS YP_001189395.1 146308930 5106450 complement(4295874..4299947) 1 NC_009439.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4299947 rpoB 5106450 rpoB Pseudomonas mendocina ymp DNA-directed RNA polymerase subunit beta YP_001189395.1 4295874 R 399739 CDS YP_001189396.1 146308931 5106451 complement(4300170..4300541) 1 NC_009439.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4300541 rplL 5106451 rplL Pseudomonas mendocina ymp 50S ribosomal protein L7/L12 YP_001189396.1 4300170 R 399739 CDS YP_001189397.1 146308932 5106452 complement(4300622..4301122) 1 NC_009439.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4301122 rplJ 5106452 rplJ Pseudomonas mendocina ymp 50S ribosomal protein L10 YP_001189397.1 4300622 R 399739 CDS YP_001189398.1 146308933 5106453 complement(4301334..4302029) 1 NC_009439.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4302029 rplA 5106453 rplA Pseudomonas mendocina ymp 50S ribosomal protein L1 YP_001189398.1 4301334 R 399739 CDS YP_001189399.1 146308934 5106454 complement(4302029..4302460) 1 NC_009439.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4302460 rplK 5106454 rplK Pseudomonas mendocina ymp 50S ribosomal protein L11 YP_001189399.1 4302029 R 399739 CDS YP_001189400.1 146308935 5106455 complement(4302579..4303112) 1 NC_009439.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 4303112 nusG 5106455 nusG Pseudomonas mendocina ymp transcription antitermination protein NusG YP_001189400.1 4302579 R 399739 CDS YP_001189401.1 146308936 5106456 complement(4303122..4303490) 1 NC_009439.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 4303490 secE 5106456 secE Pseudomonas mendocina ymp preprotein translocase subunit SecE YP_001189401.1 4303122 R 399739 CDS YP_001189402.1 146308937 5107293 complement(4303662..4304855) 1 NC_009439.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4304855 5107293 Pmen_3923 Pseudomonas mendocina ymp elongation factor Tu YP_001189402.1 4303662 R 399739 CDS YP_001189403.1 146308938 5107296 complement(4305366..4306043) 1 NC_009439.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 4306043 5107296 Pmen_3924 Pseudomonas mendocina ymp sporulation domain-containing protein YP_001189403.1 4305366 R 399739 CDS YP_001189404.1 146308939 5106459 complement(4306052..4306798) 1 NC_009439.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 4306798 5106459 Pmen_3925 Pseudomonas mendocina ymp pantothenate kinase YP_001189404.1 4306052 R 399739 CDS YP_001189405.1 146308940 5106460 complement(4306788..4307753) 1 NC_009439.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 4307753 5106460 Pmen_3926 Pseudomonas mendocina ymp biotin--protein ligase YP_001189405.1 4306788 R 399739 CDS YP_001189406.1 146308941 5107301 complement(4313865..4315064) 1 NC_009439.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 4315064 5107301 Pmen_3927 Pseudomonas mendocina ymp tyrosyl-tRNA synthetase YP_001189406.1 4313865 R 399739 CDS YP_001189407.1 146308942 5106462 4315247..4316674 1 NC_009439.1 PFAM: peptidase M23B; Opacity-associated protein A; peptidase M23B 4316674 5106462 Pmen_3928 Pseudomonas mendocina ymp peptidase M23B YP_001189407.1 4315247 D 399739 CDS YP_001189408.1 146308943 5106463 4316678..4317769 1 NC_009439.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 4317769 anmK 5106463 anmK Pseudomonas mendocina ymp anhydro-N-acetylmuramic acid kinase YP_001189408.1 4316678 D 399739 CDS YP_001189409.1 146308944 5106464 complement(4317819..4318169) 1 NC_009439.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 4318169 5106464 Pmen_3930 Pseudomonas mendocina ymp iron-sulfur cluster insertion protein ErpA YP_001189409.1 4317819 R 399739 CDS YP_001189410.1 146308945 5106465 complement(4318243..4318653) 1 NC_009439.1 PFAM: protein of unknown function DUF583; hypothetical protein 4318653 5106465 Pmen_3931 Pseudomonas mendocina ymp hypothetical protein YP_001189410.1 4318243 R 399739 CDS YP_001189411.1 146308946 5106466 complement(4318660..4319385) 1 NC_009439.1 hypothetical protein 4319385 5106466 Pmen_3932 Pseudomonas mendocina ymp hypothetical protein YP_001189411.1 4318660 R 399739 CDS YP_001189412.1 146308947 5106467 complement(4319382..4320416) 1 NC_009439.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 4320416 argC 5106467 argC Pseudomonas mendocina ymp N-acetyl-gamma-glutamyl-phosphate reductase YP_001189412.1 4319382 R 399739 CDS YP_001189413.1 146308948 5106468 4320553..4320981 1 NC_009439.1 PFAM: conserved hypothetical protein 701; hypothetical protein 4320981 5106468 Pmen_3934 Pseudomonas mendocina ymp hypothetical protein YP_001189413.1 4320553 D 399739 CDS YP_001189414.1 146308949 5106469 4320992..4321954 1 NC_009439.1 PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 4321954 5106469 Pmen_3935 Pseudomonas mendocina ymp 2-nitropropane dioxygenase YP_001189414.1 4320992 D 399739 CDS YP_001189415.1 146308950 5106470 4321951..4323213 1 NC_009439.1 PFAM: alanine racemase domain protein; alanine racemase domain-containing protein 4323213 5106470 Pmen_3936 Pseudomonas mendocina ymp alanine racemase domain-containing protein YP_001189415.1 4321951 D 399739 CDS YP_001189416.1 146308951 5106471 4323314..4324270 1 NC_009439.1 PFAM: protein of unknown function DUF805; hypothetical protein 4324270 5106471 Pmen_3937 Pseudomonas mendocina ymp hypothetical protein YP_001189416.1 4323314 D 399739 CDS YP_001189417.1 146308952 5110161 4324280..4325068 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 4325068 5110161 Pmen_3938 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001189417.1 4324280 D 399739 CDS YP_001189418.1 146308953 5110162 complement(4325076..4326557) 1 NC_009439.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; ATPase central domain-containing protein 4326557 5110162 Pmen_3939 Pseudomonas mendocina ymp ATPase central domain-containing protein YP_001189418.1 4325076 R 399739 CDS YP_001189419.1 146308954 5110163 4326679..4327512 1 NC_009439.1 PFAM: protein of unknown function DUF323; hypothetical protein 4327512 5110163 Pmen_3940 Pseudomonas mendocina ymp hypothetical protein YP_001189419.1 4326679 D 399739 CDS YP_001189420.1 146308955 5110164 4327580..4328227 1 NC_009439.1 ubiquinone biosynthesis protein COQ7-like protein 4328227 5110164 Pmen_3941 Pseudomonas mendocina ymp ubiquinone biosynthesis protein COQ7-like protein YP_001189420.1 4327580 D 399739 CDS YP_001189421.1 146308956 5110165 complement(4328277..4328699) 1 NC_009439.1 PFAM: OsmC family protein; OsmC family protein 4328699 5110165 Pmen_3942 Pseudomonas mendocina ymp OsmC family protein YP_001189421.1 4328277 R 399739 CDS YP_001189422.1 146308957 5110166 4328933..4329577 1 NC_009439.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 4329577 5110166 Pmen_3943 Pseudomonas mendocina ymp cAMP-regulatory protein YP_001189422.1 4328933 D 399739 CDS YP_001189423.1 146308958 5110167 complement(4329623..4330462) 1 NC_009439.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 4330462 trpC 5110167 trpC Pseudomonas mendocina ymp Indole-3-glycerol phosphate synthase YP_001189423.1 4329623 R 399739 CDS YP_001189424.1 146308959 5110168 complement(4330459..4331505) 1 NC_009439.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 4331505 trpD 5110168 trpD Pseudomonas mendocina ymp anthranilate phosphoribosyltransferase YP_001189424.1 4330459 R 399739 CDS YP_001189425.1 146308960 5110169 complement(4331502..4332098) 1 NC_009439.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 4332098 5110169 Pmen_3946 Pseudomonas mendocina ymp anthranilate synthase component II YP_001189425.1 4331502 R 399739 CDS YP_001189426.1 146308961 5110170 4332452..4332961 1 NC_009439.1 hypothetical protein 4332961 5110170 Pmen_3947 Pseudomonas mendocina ymp hypothetical protein YP_001189426.1 4332452 D 399739 CDS YP_001189427.1 146308962 5110171 4332978..4333673 1 NC_009439.1 PFAM: protein of unknown function DUF159; hypothetical protein 4333673 5110171 Pmen_3948 Pseudomonas mendocina ymp hypothetical protein YP_001189427.1 4332978 D 399739 CDS YP_001189428.1 146308963 5110172 complement(4333681..4333947) 1 NC_009439.1 hypothetical protein 4333947 5110172 Pmen_3949 Pseudomonas mendocina ymp hypothetical protein YP_001189428.1 4333681 R 399739 CDS YP_001189429.1 146308964 5110173 complement(4334162..4334632) 1 NC_009439.1 hypothetical protein 4334632 5110173 Pmen_3950 Pseudomonas mendocina ymp hypothetical protein YP_001189429.1 4334162 R 399739 CDS YP_001189430.1 146308965 5110174 complement(4334629..4335075) 1 NC_009439.1 hypothetical protein 4335075 5110174 Pmen_3951 Pseudomonas mendocina ymp hypothetical protein YP_001189430.1 4334629 R 399739 CDS YP_001189431.1 146308966 5110175 complement(4335386..4335814) 1 NC_009439.1 hypothetical protein 4335814 5110175 Pmen_3952 Pseudomonas mendocina ymp hypothetical protein YP_001189431.1 4335386 R 399739 CDS YP_001189432.1 146308967 5110176 complement(4335811..4336779) 1 NC_009439.1 hypothetical protein 4336779 5110176 Pmen_3953 Pseudomonas mendocina ymp hypothetical protein YP_001189432.1 4335811 R 399739 CDS YP_001189433.1 146308968 5110177 complement(4336779..4337297) 1 NC_009439.1 hypothetical protein 4337297 5110177 Pmen_3954 Pseudomonas mendocina ymp hypothetical protein YP_001189433.1 4336779 R 399739 CDS YP_001189434.1 146308969 5110178 complement(4337303..4337809) 1 NC_009439.1 hypothetical protein 4337809 5110178 Pmen_3955 Pseudomonas mendocina ymp hypothetical protein YP_001189434.1 4337303 R 399739 CDS YP_001189435.1 146308970 5110179 complement(4337799..4338371) 1 NC_009439.1 hypothetical protein 4338371 5110179 Pmen_3956 Pseudomonas mendocina ymp hypothetical protein YP_001189435.1 4337799 R 399739 CDS YP_001189436.1 146308971 5110180 complement(4338408..4339322) 1 NC_009439.1 hypothetical protein 4339322 5110180 Pmen_3957 Pseudomonas mendocina ymp hypothetical protein YP_001189436.1 4338408 R 399739 CDS YP_001189437.1 146308972 5110181 complement(4339322..4340938) 1 NC_009439.1 hypothetical protein 4340938 5110181 Pmen_3958 Pseudomonas mendocina ymp hypothetical protein YP_001189437.1 4339322 R 399739 CDS YP_001189438.1 146308973 5110182 complement(4340935..4341384) 1 NC_009439.1 hypothetical protein 4341384 5110182 Pmen_3959 Pseudomonas mendocina ymp hypothetical protein YP_001189438.1 4340935 R 399739 CDS YP_001189439.1 146308974 5110183 complement(4341387..4343108) 1 NC_009439.1 hypothetical protein 4343108 5110183 Pmen_3960 Pseudomonas mendocina ymp hypothetical protein YP_001189439.1 4341387 R 399739 CDS YP_001189440.1 146308975 5110184 complement(4343112..4343615) 1 NC_009439.1 hypothetical protein 4343615 5110184 Pmen_3961 Pseudomonas mendocina ymp hypothetical protein YP_001189440.1 4343112 R 399739 CDS YP_001189441.1 146308976 5110185 complement(4343654..4345669) 1 NC_009439.1 hypothetical protein 4345669 5110185 Pmen_3962 Pseudomonas mendocina ymp hypothetical protein YP_001189441.1 4343654 R 399739 CDS YP_001189442.1 146308977 5110186 complement(4345669..4345818) 1 NC_009439.1 hypothetical protein 4345818 5110186 Pmen_3963 Pseudomonas mendocina ymp hypothetical protein YP_001189442.1 4345669 R 399739 CDS YP_001189443.1 146308978 5110187 complement(4345845..4346207) 1 NC_009439.1 hypothetical protein 4346207 5110187 Pmen_3964 Pseudomonas mendocina ymp hypothetical protein YP_001189443.1 4345845 R 399739 CDS YP_001189444.1 146308979 5110188 complement(4346731..4347516) 1 NC_009439.1 hypothetical protein 4347516 5110188 Pmen_3965 Pseudomonas mendocina ymp hypothetical protein YP_001189444.1 4346731 R 399739 CDS YP_001189445.1 146308980 5110189 complement(4347540..4347986) 1 NC_009439.1 hypothetical protein 4347986 5110189 Pmen_3966 Pseudomonas mendocina ymp hypothetical protein YP_001189445.1 4347540 R 399739 CDS YP_001189446.1 146308981 5110190 complement(4347990..4348577) 1 NC_009439.1 hypothetical protein 4348577 5110190 Pmen_3967 Pseudomonas mendocina ymp hypothetical protein YP_001189446.1 4347990 R 399739 CDS YP_001189447.1 146308982 5110191 complement(4348574..4349125) 1 NC_009439.1 hypothetical protein 4349125 5110191 Pmen_3968 Pseudomonas mendocina ymp hypothetical protein YP_001189447.1 4348574 R 399739 CDS YP_001189448.1 146308983 5110192 complement(4349128..4349658) 1 NC_009439.1 hypothetical protein 4349658 5110192 Pmen_3969 Pseudomonas mendocina ymp hypothetical protein YP_001189448.1 4349128 R 399739 CDS YP_001189449.1 146308984 5110193 complement(4349925..4351166) 1 NC_009439.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; HK97 family phage major capsid protein 4351166 5110193 Pmen_3970 Pseudomonas mendocina ymp HK97 family phage major capsid protein YP_001189449.1 4349925 R 399739 CDS YP_001189450.1 146308985 5110194 complement(4351237..4351887) 1 NC_009439.1 PFAM: peptidase S14, ClpP; peptidase S14, ClpP 4351887 5110194 Pmen_3971 Pseudomonas mendocina ymp peptidase S14, ClpP YP_001189450.1 4351237 R 399739 CDS YP_001189451.1 146308986 5110195 complement(4351907..4353142) 1 NC_009439.1 TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; HK97 family phage portal protein 4353142 5110195 Pmen_3972 Pseudomonas mendocina ymp HK97 family phage portal protein YP_001189451.1 4351907 R 399739 CDS YP_001189452.1 146308987 5110196 complement(4353210..4354916) 1 NC_009439.1 PFAM: phage Terminase; phage terminase 4354916 5110196 Pmen_3973 Pseudomonas mendocina ymp phage terminase YP_001189452.1 4353210 R 399739 CDS YP_001189453.1 146308988 5110197 complement(4354900..4355421) 1 NC_009439.1 hypothetical protein 4355421 5110197 Pmen_3974 Pseudomonas mendocina ymp hypothetical protein YP_001189453.1 4354900 R 399739 CDS YP_001189454.1 146308989 5110198 complement(4355556..4355939) 1 NC_009439.1 PFAM: HNH endonuclease; HNH endonuclease 4355939 5110198 Pmen_3975 Pseudomonas mendocina ymp HNH endonuclease YP_001189454.1 4355556 R 399739 CDS YP_001189455.1 146308990 5110199 complement(4355942..4356376) 1 NC_009439.1 TIGRFAM: phage holin, lambda family; PFAM: Holin, phage lambda; phage holin 4356376 5110199 Pmen_3976 Pseudomonas mendocina ymp phage holin YP_001189455.1 4355942 R 399739 CDS YP_001189456.1 146308991 5110200 complement(4356877..4357245) 1 NC_009439.1 hypothetical protein 4357245 5110200 Pmen_3977 Pseudomonas mendocina ymp hypothetical protein YP_001189456.1 4356877 R 399739 CDS YP_001189457.1 146308992 5110201 complement(4357242..4359476) 1 NC_009439.1 PFAM: virulence-associated E family protein; virulence-associated E family protein 4359476 5110201 Pmen_3978 Pseudomonas mendocina ymp virulence-associated E family protein YP_001189457.1 4357242 R 399739 CDS YP_001189458.1 146308993 5110202 complement(4359469..4359861) 1 NC_009439.1 hypothetical protein 4359861 5110202 Pmen_3979 Pseudomonas mendocina ymp hypothetical protein YP_001189458.1 4359469 R 399739 CDS YP_001189459.1 146308994 5110203 complement(4359858..4360076) 1 NC_009439.1 TraR/DksA family transcriptional regulator 4360076 5110203 Pmen_3980 Pseudomonas mendocina ymp TraR/DksA family transcriptional regulator YP_001189459.1 4359858 R 399739 CDS YP_001189460.1 146308995 5110204 complement(4360069..4360581) 1 NC_009439.1 hypothetical protein 4360581 5110204 Pmen_3981 Pseudomonas mendocina ymp hypothetical protein YP_001189460.1 4360069 R 399739 CDS YP_001189461.1 146308996 5110205 complement(4360989..4361216) 1 NC_009439.1 PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 4361216 5110205 Pmen_3982 Pseudomonas mendocina ymp helix-turn-helix domain-containing protein YP_001189461.1 4360989 R 399739 CDS YP_001189462.1 146308997 5110206 4361321..4362043 1 NC_009439.1 PFAM: helix-turn-helix domain protein; peptidase S24, S26A and S26B; putative phage repressor 4362043 5110206 Pmen_3983 Pseudomonas mendocina ymp putative phage repressor YP_001189462.1 4361321 D 399739 CDS YP_001189463.1 146308998 5110207 4362278..4362547 1 NC_009439.1 hypothetical protein 4362547 5110207 Pmen_3984 Pseudomonas mendocina ymp hypothetical protein YP_001189463.1 4362278 D 399739 CDS YP_001189464.1 146308999 5110208 4362544..4363140 1 NC_009439.1 hypothetical protein 4363140 5110208 Pmen_3985 Pseudomonas mendocina ymp hypothetical protein YP_001189464.1 4362544 D 399739 CDS YP_001189465.1 146309000 5110209 4363151..4363441 1 NC_009439.1 hypothetical protein 4363441 5110209 Pmen_3986 Pseudomonas mendocina ymp hypothetical protein YP_001189465.1 4363151 D 399739 CDS YP_001189466.1 146309001 5110210 4363598..4364071 1 NC_009439.1 hypothetical protein 4364071 5110210 Pmen_3987 Pseudomonas mendocina ymp hypothetical protein YP_001189466.1 4363598 D 399739 CDS YP_001189467.1 146309002 5110211 4364068..4364397 1 NC_009439.1 hypothetical protein 4364397 5110211 Pmen_3988 Pseudomonas mendocina ymp hypothetical protein YP_001189467.1 4364068 D 399739 CDS YP_001189468.1 146309003 5110212 4364394..4364657 1 NC_009439.1 hypothetical protein 4364657 5110212 Pmen_3989 Pseudomonas mendocina ymp hypothetical protein YP_001189468.1 4364394 D 399739 CDS YP_001189469.1 146309004 5110213 4364732..4365418 1 NC_009439.1 hypothetical protein 4365418 5110213 Pmen_3990 Pseudomonas mendocina ymp hypothetical protein YP_001189469.1 4364732 D 399739 CDS YP_001189470.1 146309005 5110214 4365415..4365960 1 NC_009439.1 hypothetical protein 4365960 5110214 Pmen_3991 Pseudomonas mendocina ymp hypothetical protein YP_001189470.1 4365415 D 399739 CDS YP_001189471.1 146309006 5110215 4365957..4366865 1 NC_009439.1 hypothetical protein 4366865 5110215 Pmen_3992 Pseudomonas mendocina ymp hypothetical protein YP_001189471.1 4365957 D 399739 CDS YP_001189472.1 146309007 5110216 complement(4367147..4367809) 1 NC_009439.1 hypothetical protein 4367809 5110216 Pmen_3993 Pseudomonas mendocina ymp hypothetical protein YP_001189472.1 4367147 R 399739 CDS YP_001189473.1 146309008 5110217 4367884..4368120 1 NC_009439.1 PFAM: Prophage CP4-57 regulatory; phage transcriptional regulator AlpA 4368120 5110217 Pmen_3994 Pseudomonas mendocina ymp phage transcriptional regulator AlpA YP_001189473.1 4367884 D 399739 CDS YP_001189474.1 146309009 5110218 complement(4368134..4368490) 1 NC_009439.1 hypothetical protein 4368490 5110218 Pmen_3995 Pseudomonas mendocina ymp hypothetical protein YP_001189474.1 4368134 R 399739 CDS YP_001189475.1 146309010 5110219 complement(4368492..4369661) 1 NC_009439.1 PFAM: phage integrase family protein; phage integrase family protein 4369661 5110219 Pmen_3996 Pseudomonas mendocina ymp phage integrase family protein YP_001189475.1 4368492 R 399739 CDS YP_001189476.1 146309011 5110220 complement(4369858..4371348) 1 NC_009439.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 4371348 5110220 Pmen_3997 Pseudomonas mendocina ymp anthranilate synthase component I YP_001189476.1 4369858 R 399739 CDS YP_001189477.1 146309012 5110221 complement(4371619..4372299) 1 NC_009439.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase 4372299 5110221 Pmen_3998 Pseudomonas mendocina ymp phosphoglycolate phosphatase YP_001189477.1 4371619 R 399739 CDS YP_001189478.1 146309013 5110222 complement(4372296..4372970) 1 NC_009439.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 4372970 5110222 Pmen_3999 Pseudomonas mendocina ymp ribulose-phosphate 3-epimerase YP_001189478.1 4372296 R 399739 CDS YP_001189479.1 146309014 5110223 complement(4373123..4373950) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4373950 5110223 Pmen_4000 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189479.1 4373123 R 399739 CDS YP_001189480.1 146309015 5110224 complement(4374108..4375355) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4375355 5110224 Pmen_4001 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189480.1 4374108 R 399739 CDS YP_001189481.1 146309016 5110225 complement(4375564..4376595) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 4376595 5110225 Pmen_4002 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001189481.1 4375564 R 399739 CDS YP_001189482.1 146309017 5110226 complement(4376649..4377746) 1 NC_009439.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 4377746 5110226 Pmen_4003 Pseudomonas mendocina ymp spermidine/putrescine ABC transporter ATPase YP_001189482.1 4376649 R 399739 CDS YP_001189483.1 146309018 5110227 complement(4378048..4378677) 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 4378677 5110227 Pmen_4004 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001189483.1 4378048 R 399739 CDS YP_001189484.1 146309019 5110228 complement(4378674..4381079) 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; extracellular solute-binding protein, family 3; multi-sensor signal transduction histidine kinase 4381079 5110228 Pmen_4005 Pseudomonas mendocina ymp multi-sensor signal transduction histidine kinase YP_001189484.1 4378674 R 399739 CDS YP_001189485.1 146309020 5110229 4381193..4382170 1 NC_009439.1 hypothetical protein 4382170 5110229 Pmen_4006 Pseudomonas mendocina ymp hypothetical protein YP_001189485.1 4381193 D 399739 CDS YP_001189486.1 146309021 5110230 complement(4382167..4382928) 1 NC_009439.1 PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 4382928 5110230 Pmen_4007 Pseudomonas mendocina ymp heat shock protein DnaJ domain-containing protein YP_001189486.1 4382167 R 399739 CDS YP_001189487.1 146309022 5110231 complement(4382929..4383600) 1 NC_009439.1 PFAM: Nucleotidyl transferase; nucleotidyl transferase 4383600 5110231 Pmen_4008 Pseudomonas mendocina ymp nucleotidyl transferase YP_001189487.1 4382929 R 399739 CDS YP_001189488.1 146309023 5110232 complement(4383597..4384622) 1 NC_009439.1 PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase 4384622 5110232 Pmen_4009 Pseudomonas mendocina ymp aminoglycoside phosphotransferase YP_001189488.1 4383597 R 399739 CDS YP_001189489.1 146309024 5110233 4384747..4387563 1 NC_009439.1 PFAM: OstA family protein; Organic solvent tolerance protein; organic solvent tolerance protein 4387563 5110233 Pmen_4010 Pseudomonas mendocina ymp organic solvent tolerance protein YP_001189489.1 4384747 D 399739 CDS YP_001189490.1 146309025 5110234 4387544..4388836 1 NC_009439.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 4388836 5110234 Pmen_4011 Pseudomonas mendocina ymp PpiC-type peptidyl-prolyl cis-trans isomerase YP_001189490.1 4387544 D 399739 CDS YP_001189491.1 146309026 5110235 4388935..4389948 1 NC_009439.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 4389948 pdxA 5110235 pdxA Pseudomonas mendocina ymp 4-hydroxythreonine-4-phosphate dehydrogenase YP_001189491.1 4388935 D 399739 CDS YP_001189492.1 146309027 5110236 4390163..4390972 1 NC_009439.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 4390972 ksgA 5110236 ksgA Pseudomonas mendocina ymp dimethyladenosine transferase YP_001189492.1 4390163 D 399739 CDS YP_001189493.1 146309028 5110237 4391002..4391382 1 NC_009439.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 4391382 apaG 5110237 apaG Pseudomonas mendocina ymp ApaG protein YP_001189493.1 4391002 D 399739 CDS YP_001189494.1 146309029 5110238 4391382..4392200 1 NC_009439.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 4392200 apaH 5110238 apaH Pseudomonas mendocina ymp diadenosine tetraphosphatase YP_001189494.1 4391382 D 399739 CDS YP_001189495.1 146309030 5110239 4392242..4392571 1 NC_009439.1 belongs to rhodanese family; thiosulfate thiotransferase; in Escherichia coli this enzyme catalyzes the formation of thiocyanate from thiosulfate and cyanide with low efficiency; contains an active site cysteine; thiosulfate sulfurtransferase 4392571 glpE 5110239 glpE Pseudomonas mendocina ymp thiosulfate sulfurtransferase YP_001189495.1 4392242 D 399739 CDS YP_001189496.1 146309031 5106314 4392854..4394776 1 NC_009439.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; putative serine protein kinase PrkA 4394776 5106314 Pmen_4017 Pseudomonas mendocina ymp putative serine protein kinase PrkA YP_001189496.1 4392854 D 399739 CDS YP_001189497.1 146309032 5106315 4394851..4396122 1 NC_009439.1 PFAM: protein of unknown function DUF444; hypothetical protein 4396122 5106315 Pmen_4018 Pseudomonas mendocina ymp hypothetical protein YP_001189497.1 4394851 D 399739 CDS YP_001189498.1 146309033 5106316 4396133..4397698 1 NC_009439.1 PFAM: SpoVR family protein; SpoVR family protein 4397698 5106316 Pmen_4019 Pseudomonas mendocina ymp SpoVR family protein YP_001189498.1 4396133 D 399739 CDS YP_001189499.1 146309034 5106317 4397712..4398272 1 NC_009439.1 hypothetical protein 4398272 5106317 Pmen_4020 Pseudomonas mendocina ymp hypothetical protein YP_001189499.1 4397712 D 399739 CDS YP_001189500.1 146309035 5106318 4398386..4399618 1 NC_009439.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 4399618 cca 5106318 cca Pseudomonas mendocina ymp multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase YP_001189500.1 4398386 D 399739 CDS YP_001189501.1 146309036 5106319 complement(4399734..4400267) 1 NC_009439.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 4400267 5106319 Pmen_4022 Pseudomonas mendocina ymp 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001189501.1 4399734 R 399739 CDS YP_001189502.1 146309037 5106320 complement(4400258..4400614) 1 NC_009439.1 TIGRFAM: dihydroneopterin aldolase; dihydroneopterin aldolase 4400614 5106320 Pmen_4023 Pseudomonas mendocina ymp dihydroneopterin aldolase YP_001189502.1 4400258 R 399739 CDS YP_001189503.1 146309038 5106321 4400681..4401259 1 NC_009439.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 4401259 5106321 Pmen_4024 Pseudomonas mendocina ymp putative glycerol-3-phosphate acyltransferase PlsY YP_001189503.1 4400681 D 399739 CDS YP_001189504.1 146309039 5106322 complement(4401293..4402318) 1 NC_009439.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 4402318 5106322 Pmen_4025 Pseudomonas mendocina ymp putative DNA-binding/iron metalloprotein/AP endonuclease YP_001189504.1 4401293 R 399739 CDS YP_001189505.1 146309040 5106323 4402522..4402737 1 NC_009439.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 4402737 rpsU 5106323 rpsU Pseudomonas mendocina ymp 30S ribosomal protein S21 YP_001189505.1 4402522 D 399739 CDS YP_001189506.1 146309041 5106324 4402883..4404874 1 NC_009439.1 synthesizes RNA primers at the replication forks; DNA primase 4404874 dnaG 5106324 dnaG Pseudomonas mendocina ymp DNA primase YP_001189506.1 4402883 D 399739 CDS YP_001189507.1 146309042 5106325 4404942..4406789 1 NC_009439.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 4406789 5106325 Pmen_4028 Pseudomonas mendocina ymp RNA polymerase sigma factor RpoD YP_001189507.1 4404942 D 399739 CDS YP_001189508.1 146309043 5106326 4406940..4410674 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein, family 3; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4410674 5106326 Pmen_4029 Pseudomonas mendocina ymp PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001189508.1 4406940 D 399739 CDS YP_001189509.1 146309044 5107302 4410999..4411331 1 NC_009439.1 hypothetical protein 4411331 5107302 Pmen_4030 Pseudomonas mendocina ymp hypothetical protein YP_001189509.1 4410999 D 399739 CDS YP_001189510.1 146309045 5106328 4411533..4411799 1 NC_009439.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 4411799 5106328 Pmen_4031 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001189510.1 4411533 D 399739 CDS YP_001189511.1 146309046 5106329 4411796..4413130 1 NC_009439.1 PFAM: HipA domain protein; HipA domain-containing protein 4413130 5106329 Pmen_4032 Pseudomonas mendocina ymp HipA domain-containing protein YP_001189511.1 4411796 D 399739 CDS YP_001189512.1 146309047 5106330 4413429..4414199 1 NC_009439.1 PFAM: NERD domain protein; DNA topoisomerase, type IA, zn finger domain protein; NERD domain-containing protein 4414199 5106330 Pmen_4033 Pseudomonas mendocina ymp NERD domain-containing protein YP_001189512.1 4413429 D 399739 CDS YP_001189513.1 146309048 5106331 4414352..4415752 1 NC_009439.1 hypothetical protein 4415752 5106331 Pmen_4034 Pseudomonas mendocina ymp hypothetical protein YP_001189513.1 4414352 D 399739 CDS YP_001189514.1 146309049 5106332 4415749..4416729 1 NC_009439.1 hypothetical protein 4416729 5106332 Pmen_4035 Pseudomonas mendocina ymp hypothetical protein YP_001189514.1 4415749 D 399739 CDS YP_001189515.1 146309050 5106333 4416852..4417949 1 NC_009439.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 4417949 5106333 Pmen_4036 Pseudomonas mendocina ymp DNA-cytosine methyltransferase YP_001189515.1 4416852 D 399739 CDS YP_001189516.1 146309051 5106334 4418316..4419599 1 NC_009439.1 PFAM: protein of unknown function DUF323; hypothetical protein 4419599 5106334 Pmen_4037 Pseudomonas mendocina ymp hypothetical protein YP_001189516.1 4418316 D 399739 CDS YP_001189517.1 146309052 5106335 4419602..4420564 1 NC_009439.1 PFAM: Methyltransferase type 12; type 12 methyltransferase 4420564 5106335 Pmen_4038 Pseudomonas mendocina ymp type 12 methyltransferase YP_001189517.1 4419602 D 399739 CDS YP_001189518.1 146309053 5106336 complement(4420804..4421028) 1 NC_009439.1 PFAM: protein of unknown function UPF0057; hypothetical protein 4421028 5106336 Pmen_4039 Pseudomonas mendocina ymp hypothetical protein YP_001189518.1 4420804 R 399739 CDS YP_001189519.1 146309054 5106337 4421145..4421795 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; two component LuxR family transcriptional regulator 4421795 5106337 Pmen_4040 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001189519.1 4421145 D 399739 CDS YP_001189520.1 146309055 5106338 complement(4421797..4423428) 1 NC_009439.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor hybrid histidine kinase 4423428 5106338 Pmen_4041 Pseudomonas mendocina ymp integral membrane sensor hybrid histidine kinase YP_001189520.1 4421797 R 399739 CDS YP_001189521.1 146309056 5106339 4423611..4423982 1 NC_009439.1 hypothetical protein 4423982 5106339 Pmen_4042 Pseudomonas mendocina ymp hypothetical protein YP_001189521.1 4423611 D 399739 CDS YP_001189522.1 146309057 5106340 complement(4424017..4425117) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 4425117 5106340 Pmen_4043 Pseudomonas mendocina ymp diguanylate cyclase YP_001189522.1 4424017 R 399739 CDS YP_001189523.1 146309058 5106341 complement(4425205..4426500) 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 4426500 5106341 Pmen_4044 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctM YP_001189523.1 4425205 R 399739 CDS YP_001189524.1 146309059 5106342 complement(4426490..4426966) 1 NC_009439.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4426966 5106342 Pmen_4045 Pseudomonas mendocina ymp tripartite ATP-independent periplasmic transporter DctQ YP_001189524.1 4426490 R 399739 CDS YP_001189525.1 146309060 5106343 complement(4427124..4428125) 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 4428125 5106343 Pmen_4046 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001189525.1 4427124 R 399739 CDS YP_001189526.1 146309061 5106344 4428423..4429883 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 4429883 5106344 Pmen_4047 Pseudomonas mendocina ymp sigma-54 dependent trancsriptional regulator YP_001189526.1 4428423 D 399739 CDS YP_001189527.1 146309062 5106345 4430311..4431696 1 NC_009439.1 PFAM: Gluconate transporter; Citrate transporter; citrate transporter 4431696 5106345 Pmen_4048 Pseudomonas mendocina ymp citrate transporter YP_001189527.1 4430311 D 399739 CDS YP_001189528.1 146309063 5106346 4431771..4433399 1 NC_009439.1 PFAM: coenzyme A transferase; propionate CoA-transferase 4433399 5106346 Pmen_4049 Pseudomonas mendocina ymp propionate CoA-transferase YP_001189528.1 4431771 D 399739 CDS YP_001189529.1 146309064 5106347 4433541..4435853 1 NC_009439.1 TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 4435853 5106347 Pmen_4050 Pseudomonas mendocina ymp oxidoreductase alpha (molybdopterin) subunit YP_001189529.1 4433541 D 399739 CDS YP_001189530.1 146309065 5106348 complement(4435850..4436812) 1 NC_009439.1 catalyzes the formation of putrescine from agmatine; agmatinase 4436812 5106348 Pmen_4051 Pseudomonas mendocina ymp agmatinase YP_001189530.1 4435850 R 399739 CDS YP_001189531.1 146309066 5106349 complement(4436867..4437940) 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 4437940 5106349 Pmen_4052 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001189531.1 4436867 R 399739 CDS YP_001189532.1 146309067 5106350 complement(4438117..4438950) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; AraC family transcriptional regulator 4438950 5106350 Pmen_4053 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189532.1 4438117 R 399739 CDS YP_001189533.1 146309068 5106351 4439123..4440019 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4440019 5106351 Pmen_4054 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189533.1 4439123 D 399739 CDS YP_001189534.1 146309069 5106352 complement(4440016..4440270) 1 NC_009439.1 hypothetical protein 4440270 5106352 Pmen_4055 Pseudomonas mendocina ymp hypothetical protein YP_001189534.1 4440016 R 399739 CDS YP_001189535.1 146309070 5106353 4440402..4440956 1 NC_009439.1 PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 4440956 5106353 Pmen_4056 Pseudomonas mendocina ymp NADPH-dependent FMN reductase YP_001189535.1 4440402 D 399739 CDS YP_001189536.1 146309071 5106354 4441061..4441636 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4441636 5106354 Pmen_4057 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001189536.1 4441061 D 399739 CDS YP_001189537.1 146309072 5106355 4441638..4442516 1 NC_009439.1 alpha/beta hydrolase-like protein 4442516 5106355 Pmen_4058 Pseudomonas mendocina ymp alpha/beta hydrolase-like protein YP_001189537.1 4441638 D 399739 CDS YP_001189538.1 146309073 5106356 complement(4442950..4444905) 1 NC_009439.1 PFAM: protein of unknown function DUF839; hypothetical protein 4444905 5106356 Pmen_4059 Pseudomonas mendocina ymp hypothetical protein YP_001189538.1 4442950 R 399739 CDS YP_001189539.1 146309074 5106357 complement(4444973..4445764) 1 NC_009439.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; TonB family protein 4445764 5106357 Pmen_4060 Pseudomonas mendocina ymp TonB family protein YP_001189539.1 4444973 R 399739 CDS YP_001189540.1 146309075 5106358 complement(4445761..4446210) 1 NC_009439.1 PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 4446210 5106358 Pmen_4061 Pseudomonas mendocina ymp biopolymer transport protein ExbD/TolR YP_001189540.1 4445761 R 399739 CDS YP_001189541.1 146309076 5106359 complement(4446221..4446931) 1 NC_009439.1 PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 4446931 5106359 Pmen_4062 Pseudomonas mendocina ymp MotA/TolQ/ExbB proton channel YP_001189541.1 4446221 R 399739 CDS YP_001189542.1 146309077 5106360 complement(4447026..4448981) 1 NC_009439.1 PFAM: phytase; 3-phytase 4448981 5106360 Pmen_4063 Pseudomonas mendocina ymp 3-phytase YP_001189542.1 4447026 R 399739 CDS YP_001189543.1 146309078 5106361 complement(4449043..4451553) 1 NC_009439.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 4451553 5106361 Pmen_4064 Pseudomonas mendocina ymp TonB-dependent receptor YP_001189543.1 4449043 R 399739 CDS YP_001189544.1 146309079 5106362 4451906..4452823 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 4452823 5106362 Pmen_4065 Pseudomonas mendocina ymp diguanylate cyclase YP_001189544.1 4451906 D 399739 CDS YP_001189545.1 146309080 5106363 4452834..4453865 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4453865 5106363 Pmen_4066 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189545.1 4452834 D 399739 CDS YP_001189546.1 146309081 5106364 4454269..4454928 1 NC_009439.1 PFAM: Endonuclease I; endonuclease I 4454928 5106364 Pmen_4067 Pseudomonas mendocina ymp endonuclease I YP_001189546.1 4454269 D 399739 CDS YP_001189547.1 146309082 5106365 complement(4455057..4455809) 1 NC_009439.1 TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator 4455809 5106365 Pmen_4068 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001189547.1 4455057 R 399739 CDS YP_001189548.1 146309083 5106366 complement(4456191..4457726) 1 NC_009439.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 4457726 5106366 Pmen_4069 Pseudomonas mendocina ymp histidine ammonia-lyase YP_001189548.1 4456191 R 399739 CDS YP_001189549.1 146309084 5106367 complement(4457844..4459505) 1 NC_009439.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 4459505 5106367 Pmen_4070 Pseudomonas mendocina ymp urocanate hydratase YP_001189549.1 4457844 R 399739 CDS YP_001189550.1 146309085 5106368 complement(4459545..4460870) 1 NC_009439.1 PFAM: nucleoside recognition domain protein; nucleoside recognition domain-containing protein 4460870 5106368 Pmen_4071 Pseudomonas mendocina ymp nucleoside recognition domain-containing protein YP_001189550.1 4459545 R 399739 CDS YP_001189551.1 146309086 5106369 complement(4460962..4461897) 1 NC_009439.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate; formimidoylglutamase 4461897 5106369 Pmen_4072 Pseudomonas mendocina ymp formimidoylglutamase YP_001189551.1 4460962 R 399739 CDS YP_001189552.1 146309087 5106370 complement(4461887..4463104) 1 NC_009439.1 TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; imidazolonepropionase 4463104 5106370 Pmen_4073 Pseudomonas mendocina ymp imidazolonepropionase YP_001189552.1 4461887 R 399739 CDS YP_001189553.1 146309088 5106371 4463332..4463925 1 NC_009439.1 PFAM: protein of unknown function DUF886; hypothetical protein 4463925 5106371 Pmen_4074 Pseudomonas mendocina ymp hypothetical protein YP_001189553.1 4463332 D 399739 CDS YP_001189554.1 146309089 5106372 4464005..4465165 1 NC_009439.1 PFAM: Na+/Pi-cotransporter; Na+/Pi-cotransporter 4465165 5106372 Pmen_4075 Pseudomonas mendocina ymp Na+/Pi-cotransporter YP_001189554.1 4464005 D 399739 CDS YP_001189555.1 146309090 5106373 4465185..4465412 1 NC_009439.1 hypothetical protein 4465412 5106373 Pmen_4076 Pseudomonas mendocina ymp hypothetical protein YP_001189555.1 4465185 D 399739 CDS YP_001189556.1 146309091 5106374 4465417..4466358 1 NC_009439.1 TIGRFAM: phosphate binding protein; phosphate binding protein 4466358 5106374 Pmen_4077 Pseudomonas mendocina ymp phosphate binding protein YP_001189556.1 4465417 D 399739 CDS YP_001189557.1 146309092 5106375 complement(4466403..4467335) 1 NC_009439.1 PFAM: protein of unknown function DUF344; hypothetical protein 4467335 5106375 Pmen_4078 Pseudomonas mendocina ymp hypothetical protein YP_001189557.1 4466403 R 399739 CDS YP_001189558.1 146309093 5106376 complement(4467630..4469408) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 4469408 5106376 Pmen_4079 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001189558.1 4467630 R 399739 CDS YP_001189559.1 146309094 5106377 complement(4469574..4470893) 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 4470893 5106377 Pmen_4080 Pseudomonas mendocina ymp diguanylate cyclase YP_001189559.1 4469574 R 399739 CDS YP_001189560.1 146309095 5106378 complement(4471008..4472813) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 4472813 5106378 Pmen_4081 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001189560.1 4471008 R 399739 CDS YP_001189561.1 146309096 5106379 complement(4472984..4473718) 1 NC_009439.1 hypothetical protein 4473718 5106379 Pmen_4082 Pseudomonas mendocina ymp hypothetical protein YP_001189561.1 4472984 R 399739 CDS YP_001189562.1 146309097 5106380 complement(4473771..4474079) 1 NC_009439.1 hypothetical protein 4474079 5106380 Pmen_4083 Pseudomonas mendocina ymp hypothetical protein YP_001189562.1 4473771 R 399739 CDS YP_001189563.1 146309098 5106381 complement(4474179..4474865) 1 NC_009439.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase 4474865 bioD 5106381 bioD Pseudomonas mendocina ymp dithiobiotin synthetase YP_001189563.1 4474179 R 399739 CDS YP_001189564.1 146309099 5106382 complement(4475277..4476080) 1 NC_009439.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; biotin biosynthesis protein BioC 4476080 5106382 Pmen_4085 Pseudomonas mendocina ymp biotin biosynthesis protein BioC YP_001189564.1 4475277 R 399739 CDS YP_001189565.1 146309100 5106383 complement(4476243..4476968) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; carboxylesterase 4476968 5106383 Pmen_4086 Pseudomonas mendocina ymp carboxylesterase YP_001189565.1 4476243 R 399739 CDS YP_001189566.1 146309101 5106384 complement(4476961..4478130) 1 NC_009439.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine; 8-amino-7-oxononanoate synthase 4478130 5106384 Pmen_4087 Pseudomonas mendocina ymp 8-amino-7-oxononanoate synthase YP_001189566.1 4476961 R 399739 CDS YP_001189567.1 146309102 5106385 complement(4478179..4479237) 1 NC_009439.1 TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 4479237 5106385 Pmen_4088 Pseudomonas mendocina ymp biotin synthase YP_001189567.1 4478179 R 399739 CDS YP_001189568.1 146309103 5106386 4479432..4479725 1 NC_009439.1 hypothetical protein 4479725 5106386 Pmen_4089 Pseudomonas mendocina ymp hypothetical protein YP_001189568.1 4479432 D 399739 CDS YP_001189569.1 146309104 5106387 4479768..4480508 1 NC_009439.1 amidophosphoribosyltransferase-like protein 4480508 5106387 Pmen_4090 Pseudomonas mendocina ymp amidophosphoribosyltransferase-like protein YP_001189569.1 4479768 D 399739 CDS YP_001189570.1 146309105 5106388 4480569..4481333 1 NC_009439.1 TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; ModE family transcriptional regulator 4481333 5106388 Pmen_4091 Pseudomonas mendocina ymp ModE family transcriptional regulator YP_001189570.1 4480569 D 399739 CDS YP_001189571.1 146309106 5106389 4481411..4482385 1 NC_009439.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 4482385 5106389 Pmen_4092 Pseudomonas mendocina ymp serine/threonine protein kinase YP_001189571.1 4481411 D 399739 CDS YP_001189572.1 146309107 5106390 4482698..4483591 1 NC_009439.1 TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; transporter DMT superfamily protein 4483591 5106390 Pmen_4093 Pseudomonas mendocina ymp transporter DMT superfamily protein YP_001189572.1 4482698 D 399739 CDS YP_001189573.1 146309108 5106391 complement(4483884..4484402) 1 NC_009439.1 PFAM: amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein 4484402 5106391 Pmen_4094 Pseudomonas mendocina ymp amino acid-binding ACT domain-containing protein YP_001189573.1 4483884 R 399739 CDS YP_001189574.1 146309109 5106392 complement(4484437..4484937) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4484937 5106392 Pmen_4095 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001189574.1 4484437 R 399739 CDS YP_001189575.1 146309110 5105615 4485243..4487420 1 NC_009439.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 4487420 5105615 Pmen_4096 Pseudomonas mendocina ymp malate synthase G YP_001189575.1 4485243 D 399739 CDS YP_001189576.1 146309111 5105616 4487560..4489491 1 NC_009439.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; hypothetical protein 4489491 5105616 Pmen_4097 Pseudomonas mendocina ymp hypothetical protein YP_001189576.1 4487560 D 399739 CDS YP_001189577.1 146309112 5105617 4489488..4490189 1 NC_009439.1 TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 4490189 5105617 Pmen_4098 Pseudomonas mendocina ymp DNA polymerase III subunit epsilon YP_001189577.1 4489488 D 399739 CDS YP_001189578.1 146309113 5105618 complement(4490321..4491628) 1 NC_009439.1 PFAM: peptidase U32; peptidase U32 4491628 5105618 Pmen_4099 Pseudomonas mendocina ymp peptidase U32 YP_001189578.1 4490321 R 399739 CDS YP_001189579.1 146309114 5105619 complement(4491841..4492347) 1 NC_009439.1 hypothetical protein 4492347 5105619 Pmen_4100 Pseudomonas mendocina ymp hypothetical protein YP_001189579.1 4491841 R 399739 CDS YP_001189580.1 146309115 5105620 complement(4492439..4494208) 1 NC_009439.1 PFAM: Na+/solute symporter; Na+/solute symporter 4494208 5105620 Pmen_4101 Pseudomonas mendocina ymp Na+/solute symporter YP_001189580.1 4492439 R 399739 CDS YP_001189581.1 146309116 5105621 complement(4494215..4494475) 1 NC_009439.1 hypothetical protein 4494475 5105621 Pmen_4102 Pseudomonas mendocina ymp hypothetical protein YP_001189581.1 4494215 R 399739 CDS YP_001189582.1 146309117 5105622 4494721..4496853 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 4496853 5105622 Pmen_4103 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001189582.1 4494721 D 399739 CDS YP_001189583.1 146309118 5105623 complement(4496928..4497716) 1 NC_009439.1 hypothetical protein 4497716 5105623 Pmen_4104 Pseudomonas mendocina ymp hypothetical protein YP_001189583.1 4496928 R 399739 CDS YP_001189584.1 146309119 5105624 4497929..4501036 1 NC_009439.1 TIGRFAM: alpha-1,6-glucosidase, pullulanase-type; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha-1,6-glucosidase 4501036 5105624 Pmen_4105 Pseudomonas mendocina ymp alpha-1,6-glucosidase YP_001189584.1 4497929 D 399739 CDS YP_001189585.1 146309120 5105625 complement(4501406..4501708) 1 NC_009439.1 hypothetical protein 4501708 5105625 Pmen_4106 Pseudomonas mendocina ymp hypothetical protein YP_001189585.1 4501406 R 399739 CDS YP_001189586.1 146309121 5105626 complement(4501757..4503100) 1 NC_009439.1 PFAM: Inner membrane CreD family protein; hypothetical protein 4503100 5105626 Pmen_4107 Pseudomonas mendocina ymp hypothetical protein YP_001189586.1 4501757 R 399739 CDS YP_001189587.1 146309122 5105627 4503373..4504794 1 NC_009439.1 GbpA; plays a role mediating bacterial attachment and colonization of zooplankton and/or intestinal epithelium; in Vibrio cholerae this protein probably binds directly N-acetylglucosamine residues in chitin, glycoproteins and lipids on intestinal epithelial cells; N-acetylglucosamine-binding protein A 4504794 5105627 Pmen_4108 Pseudomonas mendocina ymp N-acetylglucosamine-binding protein A YP_001189587.1 4503373 D 399739 CDS YP_001189588.1 146309123 5105628 4505183..4506745 1 NC_009439.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; peptidase domain protein; peptidase S8/S53 subtilisin kexin sedolisin 4506745 5105628 Pmen_4109 Pseudomonas mendocina ymp peptidase S8/S53 subtilisin kexin sedolisin YP_001189588.1 4505183 D 399739 CDS YP_001189589.1 146309124 5105629 4506900..4508543 1 NC_009439.1 hypothetical protein 4508543 5105629 Pmen_4110 Pseudomonas mendocina ymp hypothetical protein YP_001189589.1 4506900 D 399739 CDS YP_001189590.1 146309125 5105630 4508540..4510840 1 NC_009439.1 SMART: helicase c2; helicase c2 4510840 5105630 Pmen_4111 Pseudomonas mendocina ymp helicase c2 YP_001189590.1 4508540 D 399739 CDS YP_001189591.1 146309126 5105631 4511128..4511523 1 NC_009439.1 hypothetical protein 4511523 5105631 Pmen_4112 Pseudomonas mendocina ymp hypothetical protein YP_001189591.1 4511128 D 399739 CDS YP_001189592.1 146309127 5105632 4511659..4511859 1 NC_009439.1 hypothetical protein 4511859 5105632 Pmen_4113 Pseudomonas mendocina ymp hypothetical protein YP_001189592.1 4511659 D 399739 CDS YP_001189593.1 146309128 5105633 complement(4511901..4513463) 1 NC_009439.1 PFAM: transposase IS66; transposase IS66 4513463 5105633 Pmen_4114 Pseudomonas mendocina ymp transposase IS66 YP_001189593.1 4511901 R 399739 CDS YP_001189594.1 146309129 5105634 complement(4513483..4513842) 1 NC_009439.1 PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein 4513842 5105634 Pmen_4115 Pseudomonas mendocina ymp IS66 Orf2 family protein YP_001189594.1 4513483 R 399739 CDS YP_001189595.1 146309130 5105635 4513894..4514352 1 NC_009439.1 hypothetical protein 4514352 5105635 Pmen_4116 Pseudomonas mendocina ymp hypothetical protein YP_001189595.1 4513894 D 399739 CDS YP_001189596.1 146309131 5105636 4514514..4514903 1 NC_009439.1 hypothetical protein 4514903 5105636 Pmen_4117 Pseudomonas mendocina ymp hypothetical protein YP_001189596.1 4514514 D 399739 CDS YP_001189597.1 146309132 5105637 4514995..4515363 1 NC_009439.1 hypothetical protein 4515363 5105637 Pmen_4118 Pseudomonas mendocina ymp hypothetical protein YP_001189597.1 4514995 D 399739 CDS YP_001189598.1 146309133 5105638 complement(4515673..4517094) 1 NC_009439.1 part of a two-component regulatory system with CreB or PhoB; involved in catabolic regulation; sensory histidine kinase CreC 4517094 5105638 Pmen_4119 Pseudomonas mendocina ymp sensory histidine kinase CreC YP_001189598.1 4515673 R 399739 CDS YP_001189599.1 146309134 5105639 complement(4517239..4517919) 1 NC_009439.1 response regulator in two-component regulatory system with CreC; CreB protein is phosphorylated by sensor protein phospho-CreC; involved in catabolic regulation; DNA-binding response regulator CreB 4517919 5105639 Pmen_4120 Pseudomonas mendocina ymp DNA-binding response regulator CreB YP_001189599.1 4517239 R 399739 CDS YP_001189600.1 146309135 5105640 complement(4518062..4518502) 1 NC_009439.1 PFAM: CBS domain containing protein; signal-transduction protein 4518502 5105640 Pmen_4121 Pseudomonas mendocina ymp signal-transduction protein YP_001189600.1 4518062 R 399739 CDS YP_001189601.1 146309136 5105641 complement(4518560..4520590) 1 NC_009439.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4520590 5105641 Pmen_4122 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001189601.1 4518560 R 399739 CDS YP_001189602.1 146309137 5105642 complement(4520752..4521264) 1 NC_009439.1 PFAM: protein of unknown function DUF785; hypothetical protein 4521264 5105642 Pmen_4123 Pseudomonas mendocina ymp hypothetical protein YP_001189602.1 4520752 R 399739 CDS YP_001189603.1 146309138 5105643 complement(4521465..4522583) 1 NC_009439.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase 4522583 5105643 Pmen_4124 Pseudomonas mendocina ymp metal dependent phosphohydrolase YP_001189603.1 4521465 R 399739 CDS YP_001189604.1 146309139 5105644 4522761..4523651 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; putative acyltransferase 4523651 5105644 Pmen_4125 Pseudomonas mendocina ymp putative acyltransferase YP_001189604.1 4522761 D 399739 CDS YP_001189605.1 146309140 5105645 complement(4523782..4524981) 1 NC_009439.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 4524981 5105645 Pmen_4126 Pseudomonas mendocina ymp alcohol dehydrogenase YP_001189605.1 4523782 R 399739 CDS YP_001189606.1 146309141 5105646 complement(4525253..4526116) 1 NC_009439.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 4526116 5105646 Pmen_4127 Pseudomonas mendocina ymp formyltetrahydrofolate deformylase YP_001189606.1 4525253 R 399739 CDS YP_001189607.1 146309142 5105647 complement(4526256..4526885) 1 NC_009439.1 TIGRFAM: sarcosine oxidase, gamma subunit family; PFAM: Sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 4526885 5105647 Pmen_4128 Pseudomonas mendocina ymp sarcosine oxidase subunit gamma YP_001189607.1 4526256 R 399739 CDS YP_001189608.1 146309143 5105648 complement(4526878..4529895) 1 NC_009439.1 TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glycine cleavage T protein (aminomethyl transferase); FAD-dependent pyridine nucleotide-disulphide oxidoreductase; sarcosine oxidase subunit alpha 4529895 5105648 Pmen_4129 Pseudomonas mendocina ymp sarcosine oxidase subunit alpha YP_001189608.1 4526878 R 399739 CDS YP_001189609.1 146309144 5105649 complement(4529892..4530218) 1 NC_009439.1 TIGRFAM: sarcosine oxidase, delta subunit family; PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; sarcosine oxidase subunit delta 4530218 5105649 Pmen_4130 Pseudomonas mendocina ymp sarcosine oxidase subunit delta YP_001189609.1 4529892 R 399739 CDS YP_001189610.1 146309145 5105650 complement(4530410..4531660) 1 NC_009439.1 TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; sarcosine oxidase subunit beta 4531660 5105650 Pmen_4131 Pseudomonas mendocina ymp sarcosine oxidase subunit beta YP_001189610.1 4530410 R 399739 CDS YP_001189611.1 146309146 5105651 complement(4531727..4532980) 1 NC_009439.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 4532980 5105651 Pmen_4132 Pseudomonas mendocina ymp serine hydroxymethyltransferase YP_001189611.1 4531727 R 399739 CDS YP_001189612.1 146309147 5105652 complement(4533651..4533950) 1 NC_009439.1 hypothetical protein 4533950 5105652 Pmen_4133 Pseudomonas mendocina ymp hypothetical protein YP_001189612.1 4533651 R 399739 CDS YP_001189613.1 146309148 5105653 4534186..4535226 1 NC_009439.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; L-threonine aldolase 4535226 5105653 Pmen_4134 Pseudomonas mendocina ymp L-threonine aldolase YP_001189613.1 4534186 D 399739 CDS YP_001189614.1 146309149 5105654 complement(4535256..4536479) 1 NC_009439.1 TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; outer membrane autotransporter 4536479 5105654 Pmen_4135 Pseudomonas mendocina ymp outer membrane autotransporter YP_001189614.1 4535256 R 399739 CDS YP_001189615.1 146309150 5105655 complement(4536602..4537705) 1 NC_009439.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 4537705 5105655 Pmen_4136 Pseudomonas mendocina ymp oxidoreductase FAD-binding subunit YP_001189615.1 4536602 R 399739 CDS YP_001189616.1 146309151 5105656 4538042..4539334 1 NC_009439.1 PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 4539334 5105656 Pmen_4137 Pseudomonas mendocina ymp Rieske (2Fe-2S) domain-containing protein YP_001189616.1 4538042 D 399739 CDS YP_001189617.1 146309152 5105657 complement(4539535..4541355) 1 NC_009439.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; GTP-binding protein TypA 4541355 5105657 Pmen_4138 Pseudomonas mendocina ymp GTP-binding protein TypA YP_001189617.1 4539535 R 399739 CDS YP_001189618.1 146309153 5105658 complement(4541506..4542960) 1 NC_009439.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 4542960 5105658 Pmen_4139 Pseudomonas mendocina ymp thiamine biosynthesis protein ThiI YP_001189618.1 4541506 R 399739 CDS YP_001189619.1 146309154 5105659 4543291..4544697 1 NC_009439.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase 4544697 5105659 Pmen_4140 Pseudomonas mendocina ymp L-glutamine synthetase YP_001189619.1 4543291 D 399739 CDS YP_001189620.1 146309155 5105660 4544963..4545529 1 NC_009439.1 hypothetical protein 4545529 5105660 Pmen_4141 Pseudomonas mendocina ymp hypothetical protein YP_001189620.1 4544963 D 399739 CDS YP_001189621.1 146309156 5105661 4545532..4546152 1 NC_009439.1 hypothetical protein 4546152 5105661 Pmen_4142 Pseudomonas mendocina ymp hypothetical protein YP_001189621.1 4545532 D 399739 CDS YP_001189622.1 146309157 5105662 4546416..4547504 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 4547504 5105662 Pmen_4143 Pseudomonas mendocina ymp PAS/PAC sensor signal transduction histidine kinase YP_001189622.1 4546416 D 399739 CDS YP_001189623.1 146309158 5105663 4547501..4548934 1 NC_009439.1 TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator, NtrC, Fis family 4548934 5105663 Pmen_4144 Pseudomonas mendocina ymp nitrogen metabolism transcriptional regulator, NtrC, Fis family YP_001189623.1 4547501 D 399739 CDS YP_001189624.1 146309159 5105664 complement(4549059..4549457) 1 NC_009439.1 PFAM: TM2 domain containing protein+B7201; TM2 domain-containing protein 4549457 5105664 Pmen_4145 Pseudomonas mendocina ymp TM2 domain-containing protein YP_001189624.1 4549059 R 399739 CDS YP_001189625.1 146309160 5105665 4549605..4550816 1 NC_009439.1 PFAM: Radical SAM domain protein; radical SAM domain-containing protein 4550816 5105665 Pmen_4146 Pseudomonas mendocina ymp radical SAM domain-containing protein YP_001189625.1 4549605 D 399739 CDS YP_001189626.1 146309161 5105666 4550816..4551703 1 NC_009439.1 hypothetical protein 4551703 5105666 Pmen_4147 Pseudomonas mendocina ymp hypothetical protein YP_001189626.1 4550816 D 399739 CDS YP_001189627.1 146309162 5105667 complement(4551669..4552814) 1 NC_009439.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 4552814 5105667 Pmen_4148 Pseudomonas mendocina ymp twitching motility protein YP_001189627.1 4551669 R 399739 CDS YP_001189628.1 146309163 5105668 complement(4552902..4553936) 1 NC_009439.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 4553936 5105668 Pmen_4149 Pseudomonas mendocina ymp twitching motility protein YP_001189628.1 4552902 R 399739 CDS YP_001189629.1 146309164 5105669 4554012..4554704 1 NC_009439.1 PFAM: alanine racemase domain protein; alanine racemase domain-containing protein 4554704 5105669 Pmen_4150 Pseudomonas mendocina ymp alanine racemase domain-containing protein YP_001189629.1 4554012 D 399739 CDS YP_001189630.1 146309165 5105670 4554722..4555543 1 NC_009439.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 4555543 5105670 Pmen_4151 Pseudomonas mendocina ymp pyrroline-5-carboxylate reductase YP_001189630.1 4554722 D 399739 CDS YP_001189631.1 146309166 5105671 4555553..4556146 1 NC_009439.1 PFAM: protein of unknown function YGGT; hypothetical protein 4556146 5105671 Pmen_4152 Pseudomonas mendocina ymp hypothetical protein YP_001189631.1 4555553 D 399739 CDS YP_001189632.1 146309167 5105672 4556151..4556447 1 NC_009439.1 PFAM: protein of unknown function DUF167; hypothetical protein 4556447 5105672 Pmen_4153 Pseudomonas mendocina ymp hypothetical protein YP_001189632.1 4556151 D 399739 CDS YP_001189633.1 146309168 5105673 4556684..4558666 1 NC_009439.1 GTPase (dynamin-related)-like protein 4558666 5105673 Pmen_4154 Pseudomonas mendocina ymp GTPase (dynamin-related)-like protein YP_001189633.1 4556684 D 399739 CDS YP_001189634.1 146309169 5105674 4558798..4559937 1 NC_009439.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 4559937 metX 5105674 metX Pseudomonas mendocina ymp homoserine O-acetyltransferase YP_001189634.1 4558798 D 399739 CDS YP_001189635.1 146309170 5105675 4559940..4560560 1 NC_009439.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; methionine biosynthesis protein MetW 4560560 5105675 Pmen_4156 Pseudomonas mendocina ymp methionine biosynthesis protein MetW YP_001189635.1 4559940 D 399739 CDS YP_001189636.1 146309171 5105676 4560582..4560998 1 NC_009439.1 hypothetical protein 4560998 5105676 Pmen_4157 Pseudomonas mendocina ymp hypothetical protein YP_001189636.1 4560582 D 399739 CDS YP_001189637.1 146309172 5105677 4560991..4561587 1 NC_009439.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 4561587 5105677 Pmen_4158 Pseudomonas mendocina ymp putative deoxyribonucleotide triphosphate pyrophosphatase YP_001189637.1 4560991 D 399739 CDS YP_001189638.1 146309173 5105678 4561584..4562744 1 NC_009439.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 4562744 5105678 Pmen_4159 Pseudomonas mendocina ymp coproporphyrinogen III oxidase YP_001189638.1 4561584 D 399739 CDS YP_001189639.1 146309174 5105679 4563009..4565255 1 NC_009439.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; Sporulation domain protein; general secretion pathway protein D 4565255 5105679 Pmen_4160 Pseudomonas mendocina ymp general secretion pathway protein D YP_001189639.1 4563009 D 399739 CDS YP_001189640.1 146309175 5105680 4565499..4566167 1 NC_009439.1 hypothetical protein 4566167 5105680 Pmen_4161 Pseudomonas mendocina ymp hypothetical protein YP_001189640.1 4565499 D 399739 CDS YP_001189641.1 146309176 5105681 4566205..4567995 1 NC_009439.1 PFAM: Carbohydrate-binding, CenC domain protein domain protein; carbohydrate-binding CenC domain-containing protein 4567995 5105681 Pmen_4162 Pseudomonas mendocina ymp carbohydrate-binding CenC domain-containing protein YP_001189641.1 4566205 D 399739 CDS YP_001189642.1 146309177 5105682 4568048..4568581 1 NC_009439.1 hypothetical protein 4568581 5105682 Pmen_4163 Pseudomonas mendocina ymp hypothetical protein YP_001189642.1 4568048 D 399739 CDS YP_001189643.1 146309178 5105683 4568835..4569158 1 NC_009439.1 hypothetical protein 4569158 5105683 Pmen_4164 Pseudomonas mendocina ymp hypothetical protein YP_001189643.1 4568835 D 399739 CDS YP_001189644.1 146309179 5105684 complement(4569319..4570662) 1 NC_009439.1 PFAM: protein of unknown function DUF1329; hypothetical protein 4570662 5105684 Pmen_4165 Pseudomonas mendocina ymp hypothetical protein YP_001189644.1 4569319 R 399739 CDS YP_001189645.1 146309180 5105685 complement(4570844..4571560) 1 NC_009439.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 4571560 trmB 5105685 trmB Pseudomonas mendocina ymp tRNA (guanine-N(7)-)-methyltransferase YP_001189645.1 4570844 R 399739 CDS YP_001189646.1 146309181 5105686 complement(4571629..4572423) 1 NC_009439.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 4572423 thiG 5105686 thiG Pseudomonas mendocina ymp thiazole synthase YP_001189646.1 4571629 R 399739 CDS YP_001189647.1 146309182 5105687 complement(4572443..4572643) 1 NC_009439.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS 4572643 5105687 Pmen_4168 Pseudomonas mendocina ymp thiamine biosynthesis protein ThiS YP_001189647.1 4572443 R 399739 CDS YP_001189648.1 146309183 5105688 complement(4572814..4573185) 1 NC_009439.1 PFAM: protein of unknown function DUF423; hypothetical protein 4573185 5105688 Pmen_4169 Pseudomonas mendocina ymp hypothetical protein YP_001189648.1 4572814 R 399739 CDS YP_001189649.1 146309184 5105689 4573361..4574089 1 NC_009439.1 glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 4574089 mtgA 5105689 mtgA Pseudomonas mendocina ymp monofunctional biosynthetic peptidoglycan transglycosylase YP_001189649.1 4573361 D 399739 CDS YP_001189650.1 146309185 5105690 complement(4574207..4574818) 1 NC_009439.1 hypothetical protein 4574818 5105690 Pmen_4171 Pseudomonas mendocina ymp hypothetical protein YP_001189650.1 4574207 R 399739 CDS YP_001189651.1 146309186 5105691 complement(4574881..4575735) 1 NC_009439.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 4575735 5105691 Pmen_4172 Pseudomonas mendocina ymp RNA polymerase factor sigma-32 YP_001189651.1 4574881 R 399739 CDS YP_001189652.1 146309187 5105692 complement(4575848..4576864) 1 NC_009439.1 PFAM: protein of unknown function DUF214; cell division protein FtsX 4576864 5105692 Pmen_4173 Pseudomonas mendocina ymp cell division protein FtsX YP_001189652.1 4575848 R 399739 CDS YP_001189653.1 146309188 5105693 complement(4576864..4577532) 1 NC_009439.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 4577532 5105693 Pmen_4174 Pseudomonas mendocina ymp cell division ATP-binding protein FtsE YP_001189653.1 4576864 R 399739 CDS YP_001189654.1 146309189 5106599 complement(4577529..4578956) 1 NC_009439.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 4578956 5106599 Pmen_4175 Pseudomonas mendocina ymp signal recognition particle-docking protein FtsY YP_001189654.1 4577529 R 399739 CDS YP_001189655.1 146309190 5106600 4579099..4580466 1 NC_009439.1 PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 4580466 5106600 Pmen_4176 Pseudomonas mendocina ymp peptidase M16 domain-containing protein YP_001189655.1 4579099 D 399739 CDS YP_001189656.1 146309191 5106601 4580463..4581923 1 NC_009439.1 PFAM: peptidase M16 domain protein; peptidase M16 domain-containing protein 4581923 5106601 Pmen_4177 Pseudomonas mendocina ymp peptidase M16 domain-containing protein YP_001189656.1 4580463 D 399739 CDS YP_001189657.1 146309192 5106602 4581923..4582525 1 NC_009439.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; putative methyltransferase 4582525 5106602 Pmen_4178 Pseudomonas mendocina ymp putative methyltransferase YP_001189657.1 4581923 D 399739 CDS YP_001189658.1 146309193 5106603 4582522..4582740 1 NC_009439.1 hypothetical protein 4582740 5106603 Pmen_4179 Pseudomonas mendocina ymp hypothetical protein YP_001189658.1 4582522 D 399739 CDS YP_001189659.1 146309194 5106604 4582826..4583809 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4583809 5106604 Pmen_4180 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001189659.1 4582826 D 399739 CDS YP_001189660.1 146309195 5106605 complement(4583811..4584317) 1 NC_009439.1 PFAM: Calcium/calmodulin dependent protein kinase II, association-domain protein; calcium/calmodulin dependent protein kinase II association-domain-containing protein 4584317 5106605 Pmen_4181 Pseudomonas mendocina ymp calcium/calmodulin dependent protein kinase II association-domain-containing protein YP_001189660.1 4583811 R 399739 CDS YP_001189661.1 146309196 5106606 4584481..4585650 1 NC_009439.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; GAF sensor signal transduction histidine kinase 4585650 5106606 Pmen_4182 Pseudomonas mendocina ymp GAF sensor signal transduction histidine kinase YP_001189661.1 4584481 D 399739 CDS YP_001189662.1 146309197 5106607 4585647..4586309 1 NC_009439.1 PFAM: regulatory protein, LuxR; response regulator receiver; two component LuxR family transcriptional regulator 4586309 5106607 Pmen_4183 Pseudomonas mendocina ymp two component LuxR family transcriptional regulator YP_001189662.1 4585647 D 399739 CDS YP_001189663.1 146309198 5106608 4586306..4588657 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 4588657 5106608 Pmen_4184 Pseudomonas mendocina ymp multi-sensor hybrid histidine kinase YP_001189663.1 4586306 D 399739 CDS YP_001189664.1 146309199 5106609 4588660..4589139 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 4589139 5106609 Pmen_4185 Pseudomonas mendocina ymp response regulator receiver protein YP_001189664.1 4588660 D 399739 CDS YP_001189665.1 146309200 5106610 complement(4589145..4589882) 1 NC_009439.1 PFAM: regulatory protein, TetR; TetR family transcriptional regulator 4589882 5106610 Pmen_4186 Pseudomonas mendocina ymp TetR family transcriptional regulator YP_001189665.1 4589145 R 399739 CDS YP_001189666.1 146309201 5106611 4590011..4591441 1 NC_009439.1 PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 4591441 5106611 Pmen_4187 Pseudomonas mendocina ymp aldehyde dehydrogenase YP_001189666.1 4590011 D 399739 CDS YP_001189667.1 146309202 5106612 4591484..4592029 1 NC_009439.1 hypothetical protein 4592029 5106612 Pmen_4188 Pseudomonas mendocina ymp hypothetical protein YP_001189667.1 4591484 D 399739 CDS YP_001189668.1 146309203 5106613 4592133..4593746 1 NC_009439.1 PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 4593746 5106613 Pmen_4189 Pseudomonas mendocina ymp glucose-methanol-choline oxidoreductase YP_001189668.1 4592133 D 399739 CDS YP_001189669.1 146309204 5106614 4593748..4594119 1 NC_009439.1 hypothetical protein 4594119 5106614 Pmen_4190 Pseudomonas mendocina ymp hypothetical protein YP_001189669.1 4593748 D 399739 CDS YP_001189670.1 146309205 5106615 4594197..4594679 1 NC_009439.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 4594679 coaD 5106615 coaD Pseudomonas mendocina ymp phosphopantetheine adenylyltransferase YP_001189670.1 4594197 D 399739 CDS YP_001189671.1 146309206 5106616 4594837..4595088 1 NC_009439.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 4595088 5106616 Pmen_4192 Pseudomonas mendocina ymp 4Fe-4S ferredoxin YP_001189671.1 4594837 D 399739 CDS YP_001189672.1 146309207 5106617 4595199..4596857 1 NC_009439.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 4596857 5106617 Pmen_4193 Pseudomonas mendocina ymp gamma-glutamyltransferase YP_001189672.1 4595199 D 399739 CDS YP_001189673.1 146309208 5106618 complement(4596925..4598766) 1 NC_009439.1 PFAM: Na+/Pi-cotransporter; Na+/Pi-cotransporter 4598766 5106618 Pmen_4194 Pseudomonas mendocina ymp Na+/Pi-cotransporter YP_001189673.1 4596925 R 399739 CDS YP_001189674.1 146309209 5106619 complement(4598855..4599193) 1 NC_009439.1 hypothetical protein 4599193 5106619 Pmen_4195 Pseudomonas mendocina ymp hypothetical protein YP_001189674.1 4598855 R 399739 CDS YP_001189675.1 146309210 5106620 complement(4599270..4599848) 1 NC_009439.1 PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 4599848 5106620 Pmen_4196 Pseudomonas mendocina ymp phospholipid/glycerol acyltransferase YP_001189675.1 4599270 R 399739 CDS YP_001189676.1 146309211 5106621 complement(4599927..4600739) 1 NC_009439.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 4600739 5106621 Pmen_4197 Pseudomonas mendocina ymp formamidopyrimidine-DNA glycosylase YP_001189676.1 4599927 R 399739 CDS YP_001189677.1 146309212 5106622 complement(4600843..4601709) 1 NC_009439.1 PFAM: HDOD; putative signal transduction protein 4601709 5106622 Pmen_4198 Pseudomonas mendocina ymp putative signal transduction protein YP_001189677.1 4600843 R 399739 CDS YP_001189678.1 146309213 5106623 4601845..4603044 1 NC_009439.1 PFAM: putative RNA methylase; SAM-dependent methyltransferase 4603044 5106623 Pmen_4199 Pseudomonas mendocina ymp SAM-dependent methyltransferase YP_001189678.1 4601845 D 399739 CDS YP_001189679.1 146309214 5106624 4603497..4604615 1 NC_009439.1 TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 4604615 5106624 Pmen_4200 Pseudomonas mendocina ymp spermidine/putrescine ABC transporter ATPase YP_001189679.1 4603497 D 399739 CDS YP_001189680.1 146309215 5106625 4604638..4605711 1 NC_009439.1 spermidine/putrescine-binding periplasmic protein-like protein 4605711 5106625 Pmen_4201 Pseudomonas mendocina ymp spermidine/putrescine-binding periplasmic protein-like protein YP_001189680.1 4604638 D 399739 CDS YP_001189681.1 146309216 5106626 4605795..4607030 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4607030 5106626 Pmen_4202 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189681.1 4605795 D 399739 CDS YP_001189682.1 146309217 5106627 4607038..4607892 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4607892 5106627 Pmen_4203 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189682.1 4607038 D 399739 CDS YP_001189683.1 146309218 5106628 complement(4607927..4608769) 1 NC_009439.1 hypothetical protein 4608769 5106628 Pmen_4204 Pseudomonas mendocina ymp hypothetical protein YP_001189683.1 4607927 R 399739 CDS YP_001189684.1 146309219 5106629 4609211..4611049 1 NC_009439.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 4611049 5106629 Pmen_4205 Pseudomonas mendocina ymp dihydroxy-acid dehydratase YP_001189684.1 4609211 D 399739 CDS YP_001189685.1 146309220 5106630 4611164..4611622 1 NC_009439.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; phosphodiesterase 4611622 5106630 Pmen_4206 Pseudomonas mendocina ymp phosphodiesterase YP_001189685.1 4611164 D 399739 CDS YP_001189686.1 146309221 5106631 4611860..4612387 1 NC_009439.1 TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 4612387 5106631 Pmen_4207 Pseudomonas mendocina ymp lactoylglutathione lyase YP_001189686.1 4611860 D 399739 CDS YP_001189687.1 146309222 5106632 complement(4612446..4613093) 1 NC_009439.1 PFAM: protein of unknown function DUF161; hypothetical protein 4613093 5106632 Pmen_4208 Pseudomonas mendocina ymp hypothetical protein YP_001189687.1 4612446 R 399739 CDS YP_001189688.1 146309223 5106633 complement(4613199..4613729) 1 NC_009439.1 PFAM: dihydrofolate reductase region; dihydrofolate reductase 4613729 5106633 Pmen_4209 Pseudomonas mendocina ymp dihydrofolate reductase YP_001189688.1 4613199 R 399739 CDS YP_001189689.1 146309224 5106634 4613875..4615026 1 NC_009439.1 PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 4615026 5106634 Pmen_4210 Pseudomonas mendocina ymp glycerophosphoryl diester phosphodiesterase YP_001189689.1 4613875 D 399739 CDS YP_001189690.1 146309225 5106635 4615087..4616478 1 NC_009439.1 hypothetical protein 4616478 5106635 Pmen_4211 Pseudomonas mendocina ymp hypothetical protein YP_001189690.1 4615087 D 399739 CDS YP_001189691.1 146309226 5106636 4616584..4617951 1 NC_009439.1 PFAM: GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 4617951 5106636 Pmen_4212 Pseudomonas mendocina ymp HSR1-like GTP-binding protein YP_001189691.1 4616584 D 399739 CDS YP_001189692.1 146309227 5106637 complement(4618055..4618849) 1 NC_009439.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 4618849 thyA 5106637 thyA Pseudomonas mendocina ymp thymidylate synthase YP_001189692.1 4618055 R 399739 CDS YP_001189693.1 146309228 5106638 complement(4618849..4619649) 1 NC_009439.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 4619649 5106638 Pmen_4214 Pseudomonas mendocina ymp prolipoprotein diacylglyceryl transferase YP_001189693.1 4618849 R 399739 CDS YP_001189694.1 146309229 5106639 complement(4619660..4620442) 1 NC_009439.1 PFAM: protein of unknown function DUF81; hypothetical protein 4620442 5106639 Pmen_4215 Pseudomonas mendocina ymp hypothetical protein YP_001189694.1 4619660 R 399739 CDS YP_001189695.1 146309230 5106640 4620643..4621389 1 NC_009439.1 PFAM: protein of unknown function DUF833; hypothetical protein 4621389 5106640 Pmen_4216 Pseudomonas mendocina ymp hypothetical protein YP_001189695.1 4620643 D 399739 CDS YP_001189696.1 146309231 5106641 complement(4621551..4623830) 1 NC_009439.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase PtsP 4623830 5106641 Pmen_4217 Pseudomonas mendocina ymp phosphoenolpyruvate-protein phosphotransferase PtsP YP_001189696.1 4621551 R 399739 CDS YP_001189697.1 146309232 5106642 complement(4623849..4624328) 1 NC_009439.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 4624328 5106642 Pmen_4218 Pseudomonas mendocina ymp dinucleoside polyphosphate hydrolase YP_001189697.1 4623849 R 399739 CDS YP_001189698.1 146309233 5106643 4624473..4625126 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 4625126 5106643 Pmen_4219 Pseudomonas mendocina ymp HAD family hydrolase YP_001189698.1 4624473 D 399739 CDS YP_001189699.1 146309234 5106644 complement(4625332..4625772) 1 NC_009439.1 hypothetical protein 4625772 5106644 Pmen_4220 Pseudomonas mendocina ymp hypothetical protein YP_001189699.1 4625332 R 399739 CDS YP_001189700.1 146309235 5106645 complement(4625865..4627379) 1 NC_009439.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 4627379 5106645 Pmen_4221 Pseudomonas mendocina ymp threonine dehydratase YP_001189700.1 4625865 R 399739 CDS YP_001189701.1 146309236 5106646 4627535..4628644 1 NC_009439.1 hypothetical protein 4628644 5106646 Pmen_4222 Pseudomonas mendocina ymp hypothetical protein YP_001189701.1 4627535 D 399739 CDS YP_001189702.1 146309237 5106647 4628666..4629379 1 NC_009439.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 4629379 5106647 Pmen_4223 Pseudomonas mendocina ymp ribose-5-phosphate isomerase A YP_001189702.1 4628666 D 399739 CDS YP_001189703.1 146309238 5106648 complement(4629506..4629841) 1 NC_009439.1 hypothetical protein 4629841 5106648 Pmen_4224 Pseudomonas mendocina ymp hypothetical protein YP_001189703.1 4629506 R 399739 CDS YP_001189704.1 146309239 5106649 complement(4629853..4632057) 1 NC_009439.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 4632057 5106649 Pmen_4225 Pseudomonas mendocina ymp heavy metal translocating P-type ATPase YP_001189704.1 4629853 R 399739 CDS YP_001189705.1 146309240 5106650 4632137..4632589 1 NC_009439.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; MerR family transcriptional regulator 4632589 5106650 Pmen_4226 Pseudomonas mendocina ymp MerR family transcriptional regulator YP_001189705.1 4632137 D 399739 CDS YP_001189706.1 146309241 5106651 complement(4632599..4633510) 1 NC_009439.1 PFAM: SdiA-regulated domain protein; SdiA-regulated domain-containing protein 4633510 5106651 Pmen_4227 Pseudomonas mendocina ymp SdiA-regulated domain-containing protein YP_001189706.1 4632599 R 399739 CDS YP_001189707.1 146309242 5106652 complement(4633582..4633929) 1 NC_009439.1 PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; conserved hypothetical protein 156; hypothetical protein 4633929 5106652 Pmen_4228 Pseudomonas mendocina ymp hypothetical protein YP_001189707.1 4633582 R 399739 CDS YP_001189708.1 146309243 5106653 complement(4634025..4634978) 1 NC_009439.1 PFAM: SdiA-regulated domain protein; SdiA-regulated domain-containing protein 4634978 5106653 Pmen_4229 Pseudomonas mendocina ymp SdiA-regulated domain-containing protein YP_001189708.1 4634025 R 399739 CDS YP_001189709.1 146309244 5106654 complement(4635025..4635723) 1 NC_009439.1 PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase 4635723 5106654 Pmen_4230 Pseudomonas mendocina ymp fumarylacetoacetate (FAA) hydrolase YP_001189709.1 4635025 R 399739 CDS YP_001189710.1 146309245 5106655 complement(4635803..4637194) 1 NC_009439.1 PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein 4637194 5106655 Pmen_4231 Pseudomonas mendocina ymp FAD linked oxidase domain-containing protein YP_001189710.1 4635803 R 399739 CDS YP_001189711.1 146309246 5106656 4637376..4638605 1 NC_009439.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4638605 5106656 Pmen_4232 Pseudomonas mendocina ymp D-3-phosphoglycerate dehydrogenase YP_001189711.1 4637376 D 399739 CDS YP_001189712.1 146309247 5106657 complement(4638720..4639211) 1 NC_009439.1 PFAM: protein of unknown function DUF523; hypothetical protein 4639211 5106657 Pmen_4233 Pseudomonas mendocina ymp hypothetical protein YP_001189712.1 4638720 R 399739 CDS YP_001189713.1 146309248 5106658 4639503..4640039 1 NC_009439.1 hypothetical protein 4640039 5106658 Pmen_4234 Pseudomonas mendocina ymp hypothetical protein YP_001189713.1 4639503 D 399739 CDS YP_001189714.1 146309249 5106659 complement(4640075..4640812) 1 NC_009439.1 PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; 2OG-Fe(II) oxygenase 4640812 5106659 Pmen_4235 Pseudomonas mendocina ymp 2OG-Fe(II) oxygenase YP_001189714.1 4640075 R 399739 CDS YP_001189715.1 146309250 5106660 4640823..4641590 1 NC_009439.1 hypothetical protein 4641590 5106660 Pmen_4236 Pseudomonas mendocina ymp hypothetical protein YP_001189715.1 4640823 D 399739 CDS YP_001189716.1 146309251 5106661 complement(4641640..4642581) 1 NC_009439.1 lysophospholipase-like protein 4642581 5106661 Pmen_4237 Pseudomonas mendocina ymp lysophospholipase-like protein YP_001189716.1 4641640 R 399739 CDS YP_001189717.1 146309252 5106662 4642697..4643278 1 NC_009439.1 hypothetical protein 4643278 5106662 Pmen_4238 Pseudomonas mendocina ymp hypothetical protein YP_001189717.1 4642697 D 399739 CDS YP_001189718.1 146309253 5106663 complement(4643364..4644392) 1 NC_009439.1 SMART: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4644392 5106663 Pmen_4239 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189718.1 4643364 R 399739 CDS YP_001189719.1 146309254 5106664 4644506..4646884 1 NC_009439.1 PFAM: peptidase S45, penicillin amidase; peptidase S45, penicillin amidase 4646884 5106664 Pmen_4240 Pseudomonas mendocina ymp peptidase S45, penicillin amidase YP_001189719.1 4644506 D 399739 CDS YP_001189720.1 146309255 5106665 complement(4647219..4647662) 1 NC_009439.1 hypothetical protein 4647662 5106665 Pmen_4241 Pseudomonas mendocina ymp hypothetical protein YP_001189720.1 4647219 R 399739 CDS YP_001189721.1 146309256 5106666 4647661..4648125 1 NC_009439.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA methyltransferase 4648125 5106666 Pmen_4242 Pseudomonas mendocina ymp RNA methyltransferase YP_001189721.1 4647661 D 399739 CDS YP_001189722.1 146309257 5106667 complement(4648225..4648710) 1 NC_009439.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 4648710 5106667 Pmen_4243 Pseudomonas mendocina ymp preprotein translocase subunit SecB YP_001189722.1 4648225 R 399739 CDS YP_001189723.1 146309258 5106668 complement(4648739..4648999) 1 NC_009439.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 4648999 5106668 Pmen_4244 Pseudomonas mendocina ymp glutaredoxin 3 YP_001189723.1 4648739 R 399739 CDS YP_001189724.1 146309259 5106669 complement(4649001..4649414) 1 NC_009439.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 4649414 5106669 Pmen_4245 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001189724.1 4649001 R 399739 CDS YP_001189725.1 146309260 5106670 4649562..4651094 1 NC_009439.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 4651094 5106670 Pmen_4246 Pseudomonas mendocina ymp phosphoglyceromutase YP_001189725.1 4649562 D 399739 CDS YP_001189726.1 146309261 5106671 4651202..4652452 1 NC_009439.1 PFAM: peptidase M23B; peptidase M23B 4652452 5106671 Pmen_4247 Pseudomonas mendocina ymp peptidase M23B YP_001189726.1 4651202 D 399739 CDS YP_001189727.1 146309262 5106672 4652499..4653815 1 NC_009439.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 4653815 5106672 Pmen_4248 Pseudomonas mendocina ymp carboxyl-terminal protease YP_001189727.1 4652499 D 399739 CDS YP_001189728.1 146309263 5106673 complement(4653973..4654728) 1 NC_009439.1 SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 4654728 5106673 Pmen_4249 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001189728.1 4653973 R 399739 CDS YP_001189729.1 146309264 5106674 complement(4654865..4655620) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 4655620 5106674 Pmen_4250 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001189729.1 4654865 R 399739 CDS YP_001189730.1 146309265 5106675 complement(4655705..4656439) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 4656439 5106675 Pmen_4251 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001189730.1 4655705 R 399739 CDS YP_001189731.1 146309266 5106676 complement(4656652..4657422) 1 NC_009439.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 4657422 5106676 Pmen_4252 Pseudomonas mendocina ymp imidazole glycerol phosphate synthase subunit HisF YP_001189731.1 4656652 R 399739 CDS YP_001189732.1 146309267 5106677 complement(4657495..4658232) 1 NC_009439.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 4658232 5106677 Pmen_4253 Pseudomonas mendocina ymp 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001189732.1 4657495 R 399739 CDS YP_001189733.1 146309268 5107028 complement(4658270..4658524) 1 NC_009439.1 hypothetical protein 4658524 5107028 Pmen_4254 Pseudomonas mendocina ymp hypothetical protein YP_001189733.1 4658270 R 399739 CDS YP_001189734.1 146309269 5107029 complement(4658524..4659162) 1 NC_009439.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 4659162 hisH 5107029 hisH Pseudomonas mendocina ymp imidazole glycerol phosphate synthase subunit HisH YP_001189734.1 4658524 R 399739 CDS YP_001189735.1 146309270 5107030 complement(4659163..4659756) 1 NC_009439.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 4659756 hisB 5107030 hisB Pseudomonas mendocina ymp imidazoleglycerol-phosphate dehydratase YP_001189735.1 4659163 R 399739 CDS YP_001189736.1 146309271 5107031 4659929..4661020 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 4661020 5107031 Pmen_4257 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001189736.1 4659929 D 399739 CDS YP_001189737.1 146309272 5107032 4661102..4663327 1 NC_009439.1 PFAM: AsmA family protein; AsmA family protein 4663327 5107032 Pmen_4258 Pseudomonas mendocina ymp AsmA family protein YP_001189737.1 4661102 D 399739 CDS YP_001189738.1 146309273 5107033 4663324..4664391 1 NC_009439.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; A/G-specific DNA-adenine glycosylase 4664391 5107033 Pmen_4259 Pseudomonas mendocina ymp A/G-specific DNA-adenine glycosylase YP_001189738.1 4663324 D 399739 CDS YP_001189739.1 146309274 5107034 4664388..4664660 1 NC_009439.1 PFAM: Fe(II) trafficking protein YggX; hypothetical protein 4664660 5107034 Pmen_4260 Pseudomonas mendocina ymp hypothetical protein YP_001189739.1 4664388 D 399739 CDS YP_001189740.1 146309275 5107303 4664986..4666680 1 NC_009439.1 hypothetical protein 4666680 5107303 Pmen_4261 Pseudomonas mendocina ymp hypothetical protein YP_001189740.1 4664986 D 399739 CDS YP_001189741.1 146309276 5107036 complement(4667090..4667548) 1 NC_009439.1 hypothetical protein 4667548 5107036 Pmen_4262 Pseudomonas mendocina ymp hypothetical protein YP_001189741.1 4667090 R 399739 CDS YP_001189742.1 146309277 5107037 complement(4667840..4668328) 1 NC_009439.1 PFAM: ribonuclease H; ribonuclease H 4668328 5107037 Pmen_4263 Pseudomonas mendocina ymp ribonuclease H YP_001189742.1 4667840 R 399739 CDS YP_001189743.1 146309278 5107038 complement(4668472..4669200) 1 NC_009439.1 hypothetical protein 4669200 5107038 Pmen_4264 Pseudomonas mendocina ymp hypothetical protein YP_001189743.1 4668472 R 399739 CDS YP_001189744.1 146309279 5107039 complement(4669210..4669491) 1 NC_009439.1 hypothetical protein 4669491 5107039 Pmen_4265 Pseudomonas mendocina ymp hypothetical protein YP_001189744.1 4669210 R 399739 CDS YP_001189745.1 146309280 5107040 complement(4670146..4670841) 1 NC_009439.1 PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 4670841 5107040 Pmen_4266 Pseudomonas mendocina ymp resolvase domain-containing protein YP_001189745.1 4670146 R 399739 CDS YP_001189746.1 146309281 5107041 4671277..4672377 1 NC_009439.1 hypothetical protein 4672377 5107041 Pmen_4267 Pseudomonas mendocina ymp hypothetical protein YP_001189746.1 4671277 D 399739 CDS YP_001189747.1 146309282 5107042 4672374..4672745 1 NC_009439.1 hypothetical protein 4672745 5107042 Pmen_4268 Pseudomonas mendocina ymp hypothetical protein YP_001189747.1 4672374 D 399739 CDS YP_001189748.1 146309283 5107043 4673130..4673903 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4673903 5107043 Pmen_4269 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189748.1 4673130 D 399739 CDS YP_001189749.1 146309284 5107044 4673919..4674671 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 4674671 5107044 Pmen_4270 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001189749.1 4673919 D 399739 CDS YP_001189750.1 146309285 5107045 4674726..4675421 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 4675421 5107045 Pmen_4271 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001189750.1 4674726 D 399739 CDS YP_001189751.1 146309286 5107046 4675418..4676188 1 NC_009439.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 4676188 5107046 Pmen_4272 Pseudomonas mendocina ymp polar amino acid ABC transporter inner membrane subunit YP_001189751.1 4675418 D 399739 CDS YP_001189752.1 146309287 5107047 4676240..4677478 1 NC_009439.1 hypothetical protein 4677478 5107047 Pmen_4273 Pseudomonas mendocina ymp hypothetical protein YP_001189752.1 4676240 D 399739 CDS YP_001189753.1 146309288 5107304 complement(4677868..4678209) 1 NC_009439.1 hypothetical protein 4678209 5107304 Pmen_4274 Pseudomonas mendocina ymp hypothetical protein YP_001189753.1 4677868 R 399739 CDS YP_001189754.1 146309289 5107049 4678369..4679508 1 NC_009439.1 PFAM: acyltransferase 3; acyltransferase 3 4679508 5107049 Pmen_4275 Pseudomonas mendocina ymp acyltransferase 3 YP_001189754.1 4678369 D 399739 CDS YP_001189755.1 146309290 5107050 4679521..4680501 1 NC_009439.1 hypothetical protein 4680501 5107050 Pmen_4276 Pseudomonas mendocina ymp hypothetical protein YP_001189755.1 4679521 D 399739 CDS YP_001189756.1 146309291 5107051 complement(4680504..4681910) 1 NC_009439.1 PFAM: virulence factor MVIN family protein; virulence factor MVIN family protein 4681910 5107051 Pmen_4277 Pseudomonas mendocina ymp virulence factor MVIN family protein YP_001189756.1 4680504 R 399739 CDS YP_001189757.1 146309292 5107052 complement(4681917..4682738) 1 NC_009439.1 acetyltransferase 4682738 5107052 Pmen_4278 Pseudomonas mendocina ymp acetyltransferase YP_001189757.1 4681917 R 399739 CDS YP_001189758.1 146309293 5107053 complement(4682735..4684177) 1 NC_009439.1 hypothetical protein 4684177 5107053 Pmen_4279 Pseudomonas mendocina ymp hypothetical protein YP_001189758.1 4682735 R 399739 CDS YP_001189759.1 146309294 5107054 complement(4684174..4685277) 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 4685277 5107054 Pmen_4280 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001189759.1 4684174 R 399739 CDS YP_001189760.1 146309295 5107055 complement(4685268..4686485) 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 4686485 5107055 Pmen_4281 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001189760.1 4685268 R 399739 CDS YP_001189761.1 146309296 5107056 complement(4686494..4687828) 1 NC_009439.1 beta-xylosidase-like protein 4687828 5107056 Pmen_4282 Pseudomonas mendocina ymp beta-xylosidase-like protein YP_001189761.1 4686494 R 399739 CDS YP_001189762.1 146309297 5107057 complement(4687818..4689008) 1 NC_009439.1 PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 4689008 5107057 Pmen_4283 Pseudomonas mendocina ymp group 1 glycosyl transferase YP_001189762.1 4687818 R 399739 CDS YP_001189763.1 146309298 5107058 complement(4689008..4691002) 1 NC_009439.1 PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 4691002 5107058 Pmen_4284 Pseudomonas mendocina ymp lipopolysaccharide biosynthesis protein YP_001189763.1 4689008 R 399739 CDS YP_001189764.1 146309299 5107059 complement(4691023..4691790) 1 NC_009439.1 PFAM: polysaccharide export protein; polysaccharide export protein 4691790 5107059 Pmen_4285 Pseudomonas mendocina ymp polysaccharide export protein YP_001189764.1 4691023 R 399739 CDS YP_001189765.1 146309300 5107060 complement(4691820..4692731) 1 NC_009439.1 PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 4692731 5107060 Pmen_4286 Pseudomonas mendocina ymp glycosyl transferase family protein YP_001189765.1 4691820 R 399739 CDS YP_001189766.1 146309301 5107061 complement(4692731..4694188) 1 NC_009439.1 TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase 4694188 5107061 Pmen_4287 Pseudomonas mendocina ymp mannose-1-phosphate guanylyltransferase YP_001189766.1 4692731 R 399739 CDS YP_001189767.1 146309302 5107062 complement(4694188..4695621) 1 NC_009439.1 PFAM: sugar transferase; sugar transferase 4695621 5107062 Pmen_4288 Pseudomonas mendocina ymp sugar transferase YP_001189767.1 4694188 R 399739 CDS YP_001189768.1 146309303 5107063 4696039..4697100 1 NC_009439.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase 4697100 5107063 Pmen_4289 Pseudomonas mendocina ymp dTDP-glucose 4,6-dehydratase YP_001189768.1 4696039 D 399739 CDS YP_001189769.1 146309304 5107064 4697113..4697985 1 NC_009439.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 4697985 5107064 Pmen_4290 Pseudomonas mendocina ymp glucose-1-phosphate thymidylyltransferase YP_001189769.1 4697113 D 399739 CDS YP_001189770.1 146309305 5107065 4697982..4698530 1 NC_009439.1 TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 4698530 5107065 Pmen_4291 Pseudomonas mendocina ymp dTDP-4-dehydrorhamnose 3,5-epimerase YP_001189770.1 4697982 D 399739 CDS YP_001189771.1 146309306 5107066 4698527..4699390 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 4699390 5107066 Pmen_4292 Pseudomonas mendocina ymp dTDP-4-dehydrorhamnose reductase YP_001189771.1 4698527 D 399739 CDS YP_001189772.1 146309307 5107067 4699443..4701257 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 4701257 5107067 Pmen_4293 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001189772.1 4699443 D 399739 CDS YP_001189773.1 146309308 5107068 4701254..4702639 1 NC_009439.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; two component sigma-54 specific Fis family transcriptional regulator 4702639 5107068 Pmen_4294 Pseudomonas mendocina ymp two component sigma-54 specific Fis family transcriptional regulator YP_001189773.1 4701254 D 399739 CDS YP_001189774.1 146309309 5107069 4702921..4703913 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 4703913 5107069 Pmen_4295 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001189774.1 4702921 D 399739 CDS YP_001189775.1 146309310 5107070 4704050..4704679 1 NC_009439.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4704679 5107070 Pmen_4296 Pseudomonas mendocina ymp tripartite ATP-independent periplasmic transporter DctQ YP_001189775.1 4704050 D 399739 CDS YP_001189776.1 146309311 5107071 4704676..4705956 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 4705956 5107071 Pmen_4297 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctM YP_001189776.1 4704676 D 399739 CDS YP_001189777.1 146309312 5107072 4706133..4706816 1 NC_009439.1 PFAM: protein of unknown function DUF502; hypothetical protein 4706816 5107072 Pmen_4298 Pseudomonas mendocina ymp hypothetical protein YP_001189777.1 4706133 D 399739 CDS YP_001189778.1 146309313 5107073 complement(4706813..4707280) 1 NC_009439.1 PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 4707280 5107073 Pmen_4299 Pseudomonas mendocina ymp AsnC family transcriptional regulator YP_001189778.1 4706813 R 399739 CDS YP_001189779.1 146309314 5107074 4707408..4707734 1 NC_009439.1 hypothetical protein 4707734 5107074 Pmen_4300 Pseudomonas mendocina ymp hypothetical protein YP_001189779.1 4707408 D 399739 CDS YP_001189780.1 146309315 5107075 4707832..4709616 1 NC_009439.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; type II secretion system protein E 4709616 5107075 Pmen_4301 Pseudomonas mendocina ymp type II secretion system protein E YP_001189780.1 4707832 D 399739 CDS YP_001189781.1 146309316 5107076 complement(4709619..4710299) 1 NC_009439.1 hypothetical protein 4710299 5107076 Pmen_4302 Pseudomonas mendocina ymp hypothetical protein YP_001189781.1 4709619 R 399739 CDS YP_001189782.1 146309317 5107077 4710559..4711494 1 NC_009439.1 PFAM: band 7 protein; hypothetical protein 4711494 5107077 Pmen_4303 Pseudomonas mendocina ymp hypothetical protein YP_001189782.1 4710559 D 399739 CDS YP_001189783.1 146309318 5107078 4711498..4711947 1 NC_009439.1 PFAM: protein of unknown function DUF107; hypothetical protein 4711947 5107078 Pmen_4304 Pseudomonas mendocina ymp hypothetical protein YP_001189783.1 4711498 D 399739 CDS YP_001189784.1 146309319 5107079 4712069..4712410 1 NC_009439.1 TIGRFAM: conserved hypothetical protein; hypothetical protein 4712410 5107079 Pmen_4305 Pseudomonas mendocina ymp hypothetical protein YP_001189784.1 4712069 D 399739 CDS YP_001189785.1 146309320 5107080 complement(4712670..4713983) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 4713983 5107080 Pmen_4306 Pseudomonas mendocina ymp outer membrane porin YP_001189785.1 4712670 R 399739 CDS YP_001189786.1 146309321 5107081 complement(4714414..4715397) 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 4715397 5107081 Pmen_4307 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase YP_001189786.1 4714414 R 399739 CDS YP_001189787.1 146309322 5107082 complement(4715497..4716687) 1 NC_009439.1 PFAM: fatty acid desaturase; fatty acid desaturase 4716687 5107082 Pmen_4308 Pseudomonas mendocina ymp fatty acid desaturase YP_001189787.1 4715497 R 399739 CDS YP_001189788.1 146309323 5107083 4716856..4719156 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4719156 5107083 Pmen_4309 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001189788.1 4716856 D 399739 CDS YP_001189789.1 146309324 5107084 4719159..4720280 1 NC_009439.1 PFAM: response regulator receiver; HDOD; response regulator receiver protein 4720280 5107084 Pmen_4310 Pseudomonas mendocina ymp response regulator receiver protein YP_001189789.1 4719159 D 399739 CDS YP_001189790.1 146309325 5107085 4720291..4724166 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 4724166 5107085 Pmen_4311 Pseudomonas mendocina ymp PAS/PAC sensor signal transduction histidine kinase YP_001189790.1 4720291 D 399739 CDS YP_001189791.1 146309326 5107086 4724166..4726088 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 4726088 5107086 Pmen_4312 Pseudomonas mendocina ymp multi-sensor signal transduction histidine kinase YP_001189791.1 4724166 D 399739 CDS YP_001189792.1 146309327 5107087 4726085..4728982 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor hybrid histidine kinase 4728982 5107087 Pmen_4313 Pseudomonas mendocina ymp multi-sensor hybrid histidine kinase YP_001189792.1 4726085 D 399739 CDS YP_001189793.1 146309328 5107088 4728975..4729361 1 NC_009439.1 PFAM: response regulator receiver; response regulator receiver protein 4729361 5107088 Pmen_4314 Pseudomonas mendocina ymp response regulator receiver protein YP_001189793.1 4728975 D 399739 CDS YP_001189794.1 146309329 5107089 4729354..4731018 1 NC_009439.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; Hpt domain protein; response regulator receiver modulated diguanylate cyclase 4731018 5107089 Pmen_4315 Pseudomonas mendocina ymp response regulator receiver modulated diguanylate cyclase YP_001189794.1 4729354 D 399739 CDS YP_001189795.1 146309330 5107090 complement(4731079..4731906) 1 NC_009439.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 4731906 5107090 Pmen_4316 Pseudomonas mendocina ymp sulfate ABC transporter permease YP_001189795.1 4731079 R 399739 CDS YP_001189796.1 146309331 5107091 complement(4731903..4732742) 1 NC_009439.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 4732742 5107091 Pmen_4317 Pseudomonas mendocina ymp sulfate ABC transporter permease YP_001189796.1 4731903 R 399739 CDS YP_001189797.1 146309332 5107092 complement(4732998..4734014) 1 NC_009439.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; sulfate ABC transporter substrate-binding protein 4734014 5107092 Pmen_4318 Pseudomonas mendocina ymp sulfate ABC transporter substrate-binding protein YP_001189797.1 4732998 R 399739 CDS YP_001189798.1 146309333 5107093 complement(4734237..4734509) 1 NC_009439.1 PFAM: TOBE domain protein; TOBE domain-containing protein 4734509 5107093 Pmen_4319 Pseudomonas mendocina ymp TOBE domain-containing protein YP_001189798.1 4734237 R 399739 CDS YP_001189799.1 146309334 5107094 complement(4734542..4735342) 1 NC_009439.1 part of the ABC type transport system SsuABC for aliphatic sulfonates; with SsuA being the periplasmic substrate-binding subunit, SsuB the ATP-binding subunit and SsuC the permease; aliphatic sulfonates transport ATP-binding subunit 4735342 ssuB 5107094 ssuB Pseudomonas mendocina ymp aliphatic sulfonates transport ATP-binding subunit YP_001189799.1 4734542 R 399739 CDS YP_001189800.1 146309335 5107095 complement(4735339..4736133) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4736133 5107095 Pmen_4321 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189800.1 4735339 R 399739 CDS YP_001189801.1 146309336 5107096 complement(4736372..4737520) 1 NC_009439.1 catalyzes the release of sulfite from alkanesulfonates; alkanesulfonate monooxygenase 4737520 5107096 Pmen_4322 Pseudomonas mendocina ymp alkanesulfonate monooxygenase YP_001189801.1 4736372 R 399739 CDS YP_001189802.1 146309337 5107097 complement(4737613..4738593) 1 NC_009439.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein 4738593 5107097 Pmen_4323 Pseudomonas mendocina ymp aliphatic sulfonates ABC transporter substrate-binding protein YP_001189802.1 4737613 R 399739 CDS YP_001189803.1 146309338 5107098 complement(4738670..4739263) 1 NC_009439.1 PFAM: NADPH-dependent FMN reductase; NAD(P)H-dependent FMN reductase 4739263 5107098 Pmen_4324 Pseudomonas mendocina ymp NAD(P)H-dependent FMN reductase YP_001189803.1 4738670 R 399739 CDS YP_001189804.1 146309339 5107099 complement(4739273..4739911) 1 NC_009439.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; 1-Cys peroxiredoxin 4739911 5107099 Pmen_4325 Pseudomonas mendocina ymp 1-Cys peroxiredoxin YP_001189804.1 4739273 R 399739 CDS YP_001189805.1 146309340 5107100 4740038..4740493 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4740493 5107100 Pmen_4326 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001189805.1 4740038 D 399739 CDS YP_001189806.1 146309341 5107101 complement(4740488..4741822) 1 NC_009439.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 4741822 5107101 Pmen_4327 Pseudomonas mendocina ymp chromate transporter YP_001189806.1 4740488 R 399739 CDS YP_001189807.1 146309342 5107102 4742656..4744449 1 NC_009439.1 hypothetical protein 4744449 5107102 Pmen_4328 Pseudomonas mendocina ymp hypothetical protein YP_001189807.1 4742656 D 399739 CDS YP_001189808.1 146309343 5107103 complement(4745079..4745810) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4745810 5107103 Pmen_4329 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189808.1 4745079 R 399739 CDS YP_001189809.1 146309344 5107104 complement(4745807..4746637) 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4746637 5107104 Pmen_4330 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189809.1 4745807 R 399739 CDS YP_001189810.1 146309345 5107105 complement(4746641..4747633) 1 NC_009439.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: ABC transporter, substrate-binding protein, aliphatic sulphonates; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein 4747633 5107105 Pmen_4331 Pseudomonas mendocina ymp aliphatic sulfonates ABC transporter substrate-binding protein YP_001189810.1 4746641 R 399739 CDS YP_001189811.1 146309346 5107106 complement(4747711..4749030) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 4749030 5107106 Pmen_4332 Pseudomonas mendocina ymp outer membrane porin YP_001189811.1 4747711 R 399739 CDS YP_001189812.1 146309347 5107186 4749385..4750377 1 NC_009439.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein, family 3; aliphatic sulfonates ABC transporter substrate-binding protein 4750377 5107186 Pmen_4333 Pseudomonas mendocina ymp aliphatic sulfonates ABC transporter substrate-binding protein YP_001189812.1 4749385 D 399739 CDS YP_001189813.1 146309348 5107187 4750374..4751603 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase type 2 4751603 5107187 Pmen_4334 Pseudomonas mendocina ymp acyl-CoA dehydrogenase type 2 YP_001189813.1 4750374 D 399739 CDS YP_001189814.1 146309349 5107188 4751707..4752633 1 NC_009439.1 PFAM: Rhodanese domain protein; rhodanese domain-containing protein 4752633 5107188 Pmen_4335 Pseudomonas mendocina ymp rhodanese domain-containing protein YP_001189814.1 4751707 D 399739 CDS YP_001189815.1 146309350 5107189 4752837..4754021 1 NC_009439.1 PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 4754021 5107189 Pmen_4336 Pseudomonas mendocina ymp hypothetical protein YP_001189815.1 4752837 D 399739 CDS YP_001189816.1 146309351 5107190 complement(4754199..4755443) 1 NC_009439.1 PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; major facilitator superfamily transporter 4755443 5107190 Pmen_4337 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001189816.1 4754199 R 399739 CDS YP_001189817.1 146309352 5107191 4755724..4756350 1 NC_009439.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 4756350 5107191 Pmen_4338 Pseudomonas mendocina ymp type 11 methyltransferase YP_001189817.1 4755724 D 399739 CDS YP_001189818.1 146309353 5107192 4756548..4757324 1 NC_009439.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 4757324 5107192 Pmen_4339 Pseudomonas mendocina ymp molybdenum ABC transporter periplasmic molybdate-binding protein YP_001189818.1 4756548 D 399739 CDS YP_001189819.1 146309354 5107193 4757390..4758070 1 NC_009439.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; molybdate ABC transporter inner membrane subunit 4758070 5107193 Pmen_4340 Pseudomonas mendocina ymp molybdate ABC transporter inner membrane subunit YP_001189819.1 4757390 D 399739 CDS YP_001189820.1 146309355 5107194 4758070..4759194 1 NC_009439.1 TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase 4759194 5107194 Pmen_4341 Pseudomonas mendocina ymp molybdate ABC transporter ATPase YP_001189820.1 4758070 D 399739 CDS YP_001189821.1 146309356 5107195 complement(4759654..4760484) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; SMART: AAA ATPase; sigma-54 factor interaction domain-containing protein 4760484 5107195 Pmen_4342 Pseudomonas mendocina ymp sigma-54 factor interaction domain-containing protein YP_001189821.1 4759654 R 399739 CDS YP_001189822.1 146309357 5107196 complement(4760598..4761179) 1 NC_009439.1 PFAM: protein of unknown function DUF1234; hypothetical protein 4761179 5107196 Pmen_4343 Pseudomonas mendocina ymp hypothetical protein YP_001189822.1 4760598 R 399739 CDS YP_001189823.1 146309358 5107197 4761423..4761605 1 NC_009439.1 hypothetical protein 4761605 5107197 Pmen_4344 Pseudomonas mendocina ymp hypothetical protein YP_001189823.1 4761423 D 399739 CDS YP_001189824.1 146309359 5107198 4761697..4762695 1 NC_009439.1 TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; sulfate ABC transporter substrate-binding protein 4762695 5107198 Pmen_4345 Pseudomonas mendocina ymp sulfate ABC transporter substrate-binding protein YP_001189824.1 4761697 D 399739 CDS YP_001189825.1 146309360 5107199 4762781..4763599 1 NC_009439.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 4763599 5107199 Pmen_4346 Pseudomonas mendocina ymp sulfate ABC transporter permease YP_001189825.1 4762781 D 399739 CDS YP_001189826.1 146309361 5107200 4763610..4764482 1 NC_009439.1 TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter permease 4764482 5107200 Pmen_4347 Pseudomonas mendocina ymp sulfate ABC transporter permease YP_001189826.1 4763610 D 399739 CDS YP_001189827.1 146309362 5107201 4764486..4765484 1 NC_009439.1 TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 4765484 5107201 Pmen_4348 Pseudomonas mendocina ymp sulfate ABC transporter ATPase YP_001189827.1 4764486 D 399739 CDS YP_001189828.1 146309363 5107202 complement(4765625..4766026) 1 NC_009439.1 hypothetical protein 4766026 5107202 Pmen_4349 Pseudomonas mendocina ymp hypothetical protein YP_001189828.1 4765625 R 399739 CDS YP_001189829.1 146309364 5107203 4766150..4766944 1 NC_009439.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 4766944 5107203 Pmen_4350 Pseudomonas mendocina ymp XRE family transcriptional regulator YP_001189829.1 4766150 D 399739 CDS YP_001189830.1 146309365 5107204 4767116..4767862 1 NC_009439.1 hypothetical protein 4767862 5107204 Pmen_4351 Pseudomonas mendocina ymp hypothetical protein YP_001189830.1 4767116 D 399739 CDS YP_001189831.1 146309366 5107205 complement(4768086..4768610) 1 NC_009439.1 PFAM: protein of unknown function DUF962; hypothetical protein 4768610 5107205 Pmen_4352 Pseudomonas mendocina ymp hypothetical protein YP_001189831.1 4768086 R 399739 CDS YP_001189832.1 146309367 5107206 4768735..4769418 1 NC_009439.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; CRP/FNR family transcriptional regulator 4769418 5107206 Pmen_4353 Pseudomonas mendocina ymp CRP/FNR family transcriptional regulator YP_001189832.1 4768735 D 399739 CDS YP_001189833.1 146309368 5107207 4769475..4771421 1 NC_009439.1 hypothetical protein 4771421 5107207 Pmen_4354 Pseudomonas mendocina ymp hypothetical protein YP_001189833.1 4769475 D 399739 CDS YP_001189834.1 146309369 5107208 complement(4771464..4772234) 1 NC_009439.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase 4772234 5107208 Pmen_4355 Pseudomonas mendocina ymp 3-hydroxybutyrate dehydrogenase YP_001189834.1 4771464 R 399739 CDS YP_001189835.1 146309370 5107209 complement(4772363..4773628) 1 NC_009439.1 PFAM: outer membrane porin; outer membrane porin 4773628 5107209 Pmen_4356 Pseudomonas mendocina ymp outer membrane porin YP_001189835.1 4772363 R 399739 CDS YP_001189836.1 146309371 5107210 complement(4773872..4775584) 1 NC_009439.1 PFAM: Tannase and feruloyl esterase; tannase and feruloyl esterase 4775584 5107210 Pmen_4357 Pseudomonas mendocina ymp tannase and feruloyl esterase YP_001189836.1 4773872 R 399739 CDS YP_001189837.1 146309372 5107211 complement(4775834..4777312) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator 4777312 5107211 Pmen_4358 Pseudomonas mendocina ymp sigma-54 dependent trancsriptional regulator YP_001189837.1 4775834 R 399739 CDS YP_001189838.1 146309373 5107212 complement(4777397..4778770) 1 NC_009439.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP dicarboxylate transporter subunit DctM 4778770 5107212 Pmen_4359 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctM YP_001189838.1 4777397 R 399739 CDS YP_001189839.1 146309374 5107213 complement(4778784..4779371) 1 NC_009439.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 4779371 5107213 Pmen_4360 Pseudomonas mendocina ymp tripartite ATP-independent periplasmic transporter DctQ YP_001189839.1 4778784 R 399739 CDS YP_001189840.1 146309375 5107214 complement(4779444..4780529) 1 NC_009439.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 4780529 5107214 Pmen_4361 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001189840.1 4779444 R 399739 CDS YP_001189841.1 146309376 5107215 complement(4780878..4782608) 1 NC_009439.1 TIGRFAM: esterase, PHB depolymerase family; PHB depolymerase family esterase 4782608 5107215 Pmen_4362 Pseudomonas mendocina ymp PHB depolymerase family esterase YP_001189841.1 4780878 R 399739 CDS YP_001189842.1 146309377 5107216 complement(4782947..4784158) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4784158 5107216 Pmen_4363 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001189842.1 4782947 R 399739 CDS YP_001189843.1 146309378 5107217 4784161..4785219 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4785219 5107217 Pmen_4364 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189843.1 4784161 D 399739 CDS YP_001189844.1 146309379 5107218 complement(4785230..4786543) 1 NC_009439.1 PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 4786543 5107218 Pmen_4365 Pseudomonas mendocina ymp FAD dependent oxidoreductase YP_001189844.1 4785230 R 399739 CDS YP_001189845.1 146309380 5107219 complement(4786626..4788041) 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; glutamine synthetase 4788041 5107219 Pmen_4366 Pseudomonas mendocina ymp glutamine synthetase YP_001189845.1 4786626 R 399739 CDS YP_001189846.1 146309381 5107220 complement(4788439..4790013) 1 NC_009439.1 PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 4790013 5107220 Pmen_4367 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001189846.1 4788439 R 399739 CDS YP_001189847.1 146309382 5107221 complement(4790241..4791317) 1 NC_009439.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4791317 5107221 Pmen_4368 Pseudomonas mendocina ymp FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001189847.1 4790241 R 399739 CDS YP_001189848.1 146309383 5107222 complement(4791314..4792327) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4792327 5107222 Pmen_4369 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189848.1 4791314 R 399739 CDS YP_001189849.1 146309384 5107223 4792431..4793489 1 NC_009439.1 PFAM: fatty acid desaturase; fatty acid desaturase 4793489 5107223 Pmen_4370 Pseudomonas mendocina ymp fatty acid desaturase YP_001189849.1 4792431 D 399739 CDS YP_001189850.1 146309385 5107224 4793673..4796555 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Diverse 7TM receptor, extracellular region 2; PAS fold-4 domain protein; SMART: PAS domain containing protein; diguanylate cyclase/phosphodiesterase 4796555 5107224 Pmen_4371 Pseudomonas mendocina ymp diguanylate cyclase/phosphodiesterase YP_001189850.1 4793673 D 399739 CDS YP_001189851.1 146309386 5107225 complement(4796540..4797754) 1 NC_009439.1 PFAM: response regulator receiver; HDOD; putative signal transduction protein 4797754 5107225 Pmen_4372 Pseudomonas mendocina ymp putative signal transduction protein YP_001189851.1 4796540 R 399739 CDS YP_001189852.1 146309387 5107226 complement(4798033..4798188) 1 NC_009439.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 4798188 rpmG 5107226 rpmG Pseudomonas mendocina ymp 50S ribosomal protein L33 YP_001189852.1 4798033 R 399739 CDS YP_001189853.1 146309388 5107227 complement(4798199..4798435) 1 NC_009439.1 required for 70S ribosome assembly; 50S ribosomal protein L28 4798435 rpmB 5107227 rpmB Pseudomonas mendocina ymp 50S ribosomal protein L28 YP_001189853.1 4798199 R 399739 CDS YP_001189854.1 146309389 5107228 4798780..4800357 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 5; 4-phytase 4800357 5107228 Pmen_4375 Pseudomonas mendocina ymp 4-phytase YP_001189854.1 4798780 D 399739 CDS YP_001189855.1 146309390 5107229 complement(4800411..4801085) 1 NC_009439.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 4801085 radC 5107229 radC Pseudomonas mendocina ymp DNA repair protein RadC YP_001189855.1 4800411 R 399739 CDS YP_001189856.1 146309391 5107230 4801226..4802434 1 NC_009439.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 4802434 5107230 Pmen_4377 Pseudomonas mendocina ymp bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_001189856.1 4801226 D 399739 CDS YP_001189857.1 146309392 5107231 4802437..4802892 1 NC_009439.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 4802892 dut 5107231 dut Pseudomonas mendocina ymp deoxyuridine 5'-triphosphate nucleotidohydrolase YP_001189857.1 4802437 D 399739 CDS YP_001189858.1 146309393 5107232 4802930..4805521 1 NC_009439.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase 4805521 5107232 Pmen_4379 Pseudomonas mendocina ymp phosphomannomutase YP_001189858.1 4802930 D 399739 CDS YP_001189859.1 146309394 5107233 4805546..4806451 1 NC_009439.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 4806451 5107233 Pmen_4380 Pseudomonas mendocina ymp acetylglutamate kinase YP_001189859.1 4805546 D 399739 CDS YP_001189860.1 146309395 5107234 4806662..4807108 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 4807108 5107234 Pmen_4381 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001189860.1 4806662 D 399739 CDS YP_001189861.1 146309396 5107235 complement(4807122..4807724) 1 NC_009439.1 hypothetical protein 4807724 5107235 Pmen_4382 Pseudomonas mendocina ymp hypothetical protein YP_001189861.1 4807122 R 399739 CDS YP_001189862.1 146309397 5107236 complement(4807740..4808381) 1 NC_009439.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 4808381 pyrE 5107236 pyrE Pseudomonas mendocina ymp orotate phosphoribosyltransferase YP_001189862.1 4807740 R 399739 CDS YP_001189863.1 146309398 5107237 4808463..4809242 1 NC_009439.1 TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 4809242 5107237 Pmen_4384 Pseudomonas mendocina ymp exodeoxyribonuclease III Xth YP_001189863.1 4808463 D 399739 CDS YP_001189864.1 146309399 5107238 complement(4809372..4809743) 1 NC_009439.1 hypothetical protein 4809743 5107238 Pmen_4385 Pseudomonas mendocina ymp hypothetical protein YP_001189864.1 4809372 R 399739 CDS YP_001189865.1 146309400 5107239 complement(4809772..4810491) 1 NC_009439.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 4810491 rph 5107239 rph Pseudomonas mendocina ymp ribonuclease PH YP_001189865.1 4809772 R 399739 CDS YP_001189866.1 146309401 5107240 4810666..4811529 1 NC_009439.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; hypothetical protein 4811529 5107240 Pmen_4387 Pseudomonas mendocina ymp hypothetical protein YP_001189866.1 4810666 D 399739 CDS YP_001189867.1 146309402 5107241 4811584..4812201 1 NC_009439.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 4812201 gmk 5107241 gmk Pseudomonas mendocina ymp guanylate kinase YP_001189867.1 4811584 D 399739 CDS YP_001189868.1 146309403 5107242 4812296..4812559 1 NC_009439.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 4812559 rpoZ 5107242 rpoZ Pseudomonas mendocina ymp DNA-directed RNA polymerase subunit omega YP_001189868.1 4812296 D 399739 CDS YP_001189869.1 146309404 5107243 4812623..4814731 1 NC_009439.1 TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 4814731 5107243 Pmen_4390 Pseudomonas mendocina ymp (p)ppGpp synthetase I SpoT/RelA YP_001189869.1 4812623 D 399739 CDS YP_001189870.1 146309405 5107244 4814800..4815180 1 NC_009439.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 4815180 5107244 Pmen_4391 Pseudomonas mendocina ymp endoribonuclease L-PSP YP_001189870.1 4814800 D 399739 CDS YP_001189871.1 146309406 5107245 4815239..4815964 1 NC_009439.1 hypothetical protein 4815964 5107245 Pmen_4392 Pseudomonas mendocina ymp hypothetical protein YP_001189871.1 4815239 D 399739 CDS YP_001189872.1 146309407 5107246 complement(4816003..4816620) 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 4816620 5107246 Pmen_4393 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001189872.1 4816003 R 399739 CDS YP_001189873.1 146309408 5107247 complement(4816768..4817568) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 4817568 5107247 Pmen_4394 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189873.1 4816768 R 399739 CDS YP_001189874.1 146309409 5107248 complement(4817570..4818427) 1 NC_009439.1 PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 4818427 5107248 Pmen_4395 Pseudomonas mendocina ymp NAD-dependent epimerase/dehydratase YP_001189874.1 4817570 R 399739 CDS YP_001189875.1 146309410 5107249 4818619..4819548 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4819548 5107249 Pmen_4396 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189875.1 4818619 D 399739 CDS YP_001189876.1 146309411 5107250 4819557..4821632 1 NC_009439.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 4821632 5107250 Pmen_4397 Pseudomonas mendocina ymp ATP-dependent DNA helicase RecG YP_001189876.1 4819557 D 399739 CDS YP_001189877.1 146309412 5107251 4821724..4823130 1 NC_009439.1 PFAM: HDOD; putative signal transduction protein 4823130 5107251 Pmen_4398 Pseudomonas mendocina ymp putative signal transduction protein YP_001189877.1 4821724 D 399739 CDS YP_001189878.1 146309413 5107252 complement(4823199..4823954) 1 NC_009439.1 hypothetical protein 4823954 5107252 Pmen_4399 Pseudomonas mendocina ymp hypothetical protein YP_001189878.1 4823199 R 399739 CDS YP_001189879.1 146309414 5107253 complement(4824022..4824417) 1 NC_009439.1 hypothetical protein 4824417 5107253 Pmen_4400 Pseudomonas mendocina ymp hypothetical protein YP_001189879.1 4824022 R 399739 CDS YP_001189880.1 146309415 5107254 complement(4824591..4824863) 1 NC_009439.1 PFAM: histone family protein DNA-binding protein; nucleoid protein HU alpha subunit 4824863 5107254 Pmen_4401 Pseudomonas mendocina ymp nucleoid protein HU alpha subunit YP_001189880.1 4824591 R 399739 CDS YP_001189881.1 146309416 5107255 complement(4825051..4826199) 1 NC_009439.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 4826199 5107255 Pmen_4402 Pseudomonas mendocina ymp FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001189881.1 4825051 R 399739 CDS YP_001189882.1 146309417 5107256 complement(4826271..4826438) 1 NC_009439.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 4826438 5107256 Pmen_4403 Pseudomonas mendocina ymp rubredoxin-type Fe(Cys)4 protein YP_001189882.1 4826271 R 399739 CDS YP_001189883.1 146309418 5107257 4826664..4827833 1 NC_009439.1 choline-glycine betaine transporter-like protein 4827833 5107257 Pmen_4404 Pseudomonas mendocina ymp choline-glycine betaine transporter-like protein YP_001189883.1 4826664 D 399739 CDS YP_001189884.1 146309419 5107258 complement(4827891..4828646) 1 NC_009439.1 hypothetical protein 4828646 5107258 Pmen_4405 Pseudomonas mendocina ymp hypothetical protein YP_001189884.1 4827891 R 399739 CDS YP_001189885.1 146309420 5107259 complement(4828858..4830198) 1 NC_009439.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein 4830198 5107259 Pmen_4406 Pseudomonas mendocina ymp hypothetical protein YP_001189885.1 4828858 R 399739 CDS YP_001189886.1 146309421 5107260 complement(4830261..4831580) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 4831580 5107260 Pmen_4407 Pseudomonas mendocina ymp PAS/PAC sensor signal transduction histidine kinase YP_001189886.1 4830261 R 399739 CDS YP_001189887.1 146309422 5107261 complement(4831617..4832306) 1 NC_009439.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 4832306 5107261 Pmen_4408 Pseudomonas mendocina ymp two component transcriptional regulator YP_001189887.1 4831617 R 399739 CDS YP_001189888.1 146309423 5107262 complement(4832390..4833280) 1 NC_009439.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 4833280 ubiA 5107262 ubiA Pseudomonas mendocina ymp 4-hydroxybenzoate octaprenyltransferase YP_001189888.1 4832390 R 399739 CDS YP_001189889.1 146309424 5107263 complement(4833385..4833936) 1 NC_009439.1 PFAM: Chorismate lyase; chorismate lyase 4833936 5107263 Pmen_4410 Pseudomonas mendocina ymp chorismate lyase YP_001189889.1 4833385 R 399739 CDS YP_001189890.1 146309425 5107264 complement(4834021..4834467) 1 NC_009439.1 hypothetical protein 4834467 5107264 Pmen_4411 Pseudomonas mendocina ymp hypothetical protein YP_001189890.1 4834021 R 399739 CDS YP_001189891.1 146309426 5107107 complement(4834464..4834742) 1 NC_009439.1 PFAM: Anti-sigma-28 factor, FlgM family protein; anti-sigma-28 factor FlgM family protein 4834742 5107107 Pmen_4412 Pseudomonas mendocina ymp anti-sigma-28 factor FlgM family protein YP_001189891.1 4834464 R 399739 CDS YP_001189892.1 146309427 5107108 complement(4834819..4835244) 1 NC_009439.1 TIGRFAM: flagellar export protein FliJ; flagellar export protein FliJ 4835244 5107108 Pmen_4413 Pseudomonas mendocina ymp flagellar export protein FliJ YP_001189892.1 4834819 R 399739 CDS YP_001189893.1 146309428 5107109 complement(4835241..4836557) 1 NC_009439.1 TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase; FliI/YscN family ATPase 4836557 5107109 Pmen_4414 Pseudomonas mendocina ymp FliI/YscN family ATPase YP_001189893.1 4835241 R 399739 CDS YP_001189894.1 146309429 5107110 complement(4836564..4837256) 1 NC_009439.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 4837256 fliH 5107110 fliH Pseudomonas mendocina ymp flagellar assembly protein H YP_001189894.1 4836564 R 399739 CDS YP_001189895.1 146309430 5107111 complement(4837258..4838322) 1 NC_009439.1 PFAM: flagellar motor switch protein FliG; flagellar motor switch protein FliG 4838322 5107111 Pmen_4416 Pseudomonas mendocina ymp flagellar motor switch protein FliG YP_001189895.1 4837258 R 399739 CDS YP_001189896.1 146309431 5107112 complement(4838297..4839976) 1 NC_009439.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; the Vibrio parahaemolyticus protein is associated with the lateral flagella; flagellar MS-ring protein 4839976 fliF 5107112 fliF Pseudomonas mendocina ymp flagellar MS-ring protein YP_001189896.1 4838297 R 399739 CDS YP_001189897.1 146309432 5107113 complement(4839997..4840332) 1 NC_009439.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 4840332 5107113 Pmen_4418 Pseudomonas mendocina ymp flagellar hook-basal body complex subunit FliE YP_001189897.1 4839997 R 399739 CDS YP_001189898.1 146309433 5107114 complement(4840344..4841753) 1 NC_009439.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma-54 specific Fis family transcriptional regulator 4841753 5107114 Pmen_4419 Pseudomonas mendocina ymp two component sigma-54 specific Fis family transcriptional regulator YP_001189898.1 4840344 R 399739 CDS YP_001189899.1 146309434 5107115 4842103..4843068 1 NC_009439.1 PFAM: surface presentation of antigens (SPOA) protein; surface presentation of antigens (SPOA) protein 4843068 5107115 Pmen_4420 Pseudomonas mendocina ymp surface presentation of antigens (SPOA) protein YP_001189899.1 4842103 D 399739 CDS YP_001189900.1 146309435 5107116 4843065..4843436 1 NC_009439.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliN 4843436 5107116 Pmen_4421 Pseudomonas mendocina ymp flagellar motor switch protein FliN YP_001189900.1 4843065 D 399739 CDS YP_001189901.1 146309436 5107117 4843436..4844188 1 NC_009439.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 4844188 fliP 5107117 fliP Pseudomonas mendocina ymp flagellar biosynthesis protein FliP YP_001189901.1 4843436 D 399739 CDS YP_001189902.1 146309437 5107118 4844201..4844473 1 NC_009439.1 PFAM: export protein FliQ, family 3; export protein FliQ 4844473 5107118 Pmen_4423 Pseudomonas mendocina ymp export protein FliQ YP_001189902.1 4844201 D 399739 CDS YP_001189903.1 146309438 5107119 4844477..4845271 1 NC_009439.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; flagellar biosynthetic protein FliR 4845271 5107119 Pmen_4424 Pseudomonas mendocina ymp flagellar biosynthetic protein FliR YP_001189903.1 4844477 D 399739 CDS YP_001189904.1 146309439 5107120 4845264..4846397 1 NC_009439.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 4846397 flhB 5107120 flhB Pseudomonas mendocina ymp flagellar biosynthesis protein FlhB YP_001189904.1 4845264 D 399739 CDS YP_001189905.1 146309440 5107121 4846401..4848497 1 NC_009439.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA 4848497 5107121 Pmen_4426 Pseudomonas mendocina ymp flagellar biosynthesis protein FlhA YP_001189905.1 4846401 D 399739 CDS YP_001189906.1 146309441 5107122 complement(4848612..4848953) 1 NC_009439.1 hypothetical protein 4848953 5107122 Pmen_4427 Pseudomonas mendocina ymp hypothetical protein YP_001189906.1 4848612 R 399739 CDS YP_001189907.1 146309442 5106727 complement(4855052..4856275) 1 NC_009439.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 4856275 5106727 Pmen_4428 Pseudomonas mendocina ymp L-carnitine dehydratase/bile acid-inducible protein F YP_001189907.1 4855052 R 399739 CDS YP_001189908.1 146309443 5107124 complement(4856332..4857510) 1 NC_009439.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 4857510 5107124 Pmen_4429 Pseudomonas mendocina ymp acyl-CoA dehydrogenase domain-containing protein YP_001189908.1 4856332 R 399739 CDS YP_001189909.1 146309444 5107125 4857688..4858584 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4858584 5107125 Pmen_4430 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189909.1 4857688 D 399739 CDS YP_001189910.1 146309445 5107126 4859051..4860172 1 NC_009439.1 PFAM: alanine dehydrogenase/PNT domain protein; NAD(P)(+) transhydrogenase 4860172 5107126 Pmen_4431 Pseudomonas mendocina ymp NAD(P)(+) transhydrogenase YP_001189910.1 4859051 D 399739 CDS YP_001189911.1 146309446 5107127 4860184..4860498 1 NC_009439.1 NAD/NADP transhydrogenase alpha subunit-like protein 4860498 5107127 Pmen_4432 Pseudomonas mendocina ymp NAD/NADP transhydrogenase alpha subunit-like protein YP_001189911.1 4860184 D 399739 CDS YP_001189912.1 146309447 5107128 4860501..4861937 1 NC_009439.1 PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase 4861937 5107128 Pmen_4433 Pseudomonas mendocina ymp NAD(P)(+) transhydrogenase YP_001189912.1 4860501 D 399739 CDS YP_001189913.1 146309448 5107129 4862295..4862510 1 NC_009439.1 hypothetical protein 4862510 5107129 Pmen_4434 Pseudomonas mendocina ymp hypothetical protein YP_001189913.1 4862295 D 399739 CDS YP_001189914.1 146309449 5107130 4862698..4862940 1 NC_009439.1 PFAM: protein of unknown function DUF1127; hypothetical protein 4862940 5107130 Pmen_4435 Pseudomonas mendocina ymp hypothetical protein YP_001189914.1 4862698 D 399739 CDS YP_001189915.1 146309450 5107131 4863027..4863347 1 NC_009439.1 TIGRFAM: conserved hypothetical protein; hypothetical protein 4863347 5107131 Pmen_4436 Pseudomonas mendocina ymp hypothetical protein YP_001189915.1 4863027 D 399739 CDS YP_001189916.1 146309451 5107132 4863632..4863952 1 NC_009439.1 TIGRFAM: conserved hypothetical protein; hypothetical protein 4863952 5107132 Pmen_4437 Pseudomonas mendocina ymp hypothetical protein YP_001189916.1 4863632 D 399739 CDS YP_001189917.1 146309452 5107133 4863949..4865904 1 NC_009439.1 hypothetical protein 4865904 5107133 Pmen_4438 Pseudomonas mendocina ymp hypothetical protein YP_001189917.1 4863949 D 399739 CDS YP_001189918.1 146309453 5107134 complement(4865970..4866368) 1 NC_009439.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 4866368 5107134 Pmen_4439 Pseudomonas mendocina ymp glutathione-dependent formaldehyde-activating protein YP_001189918.1 4865970 R 399739 CDS YP_001189919.1 146309454 5107135 4866437..4867342 1 NC_009439.1 PFAM: Auxin Efflux Carrier; auxin efflux carrier 4867342 5107135 Pmen_4440 Pseudomonas mendocina ymp auxin efflux carrier YP_001189919.1 4866437 D 399739 CDS YP_001189920.1 146309455 5107136 complement(4867376..4868155) 1 NC_009439.1 amino acid ABC transporter periplasmic protein 4868155 5107136 Pmen_4441 Pseudomonas mendocina ymp amino acid ABC transporter periplasmic protein YP_001189920.1 4867376 R 399739 CDS YP_001189921.1 146309456 5107137 4868296..4869426 1 NC_009439.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; twitching motility protein 4869426 5107137 Pmen_4442 Pseudomonas mendocina ymp twitching motility protein YP_001189921.1 4868296 D 399739 CDS YP_001189922.1 146309457 5107138 4869551..4871191 1 NC_009439.1 TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; sodium-dependent inorganic phosphate (Pi) transporter 4871191 5107138 Pmen_4443 Pseudomonas mendocina ymp sodium-dependent inorganic phosphate (Pi) transporter YP_001189922.1 4869551 D 399739 CDS YP_001189923.1 146309458 5107139 complement(4871193..4872698) 1 NC_009439.1 PFAM: Xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 4872698 5107139 Pmen_4444 Pseudomonas mendocina ymp xanthine/uracil/vitamin C permease YP_001189923.1 4871193 R 399739 CDS YP_001189924.1 146309459 5107140 complement(4872973..4875531) 1 NC_009439.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP transporter, 4TM/12TM fusion protein 4875531 5107140 Pmen_4445 Pseudomonas mendocina ymp TRAP transporter, 4TM/12TM fusion protein YP_001189924.1 4872973 R 399739 CDS YP_001189925.1 146309460 5107141 complement(4875650..4876621) 1 NC_009439.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 4876621 5107141 Pmen_4446 Pseudomonas mendocina ymp TRAP transporter solute receptor TAXI family protein YP_001189925.1 4875650 R 399739 CDS YP_001189926.1 146309461 5107142 4876794..4877822 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4877822 5107142 Pmen_4447 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189926.1 4876794 D 399739 CDS YP_001189927.1 146309462 5107143 4877825..4878145 1 NC_009439.1 PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 4878145 5107143 Pmen_4448 Pseudomonas mendocina ymp antibiotic biosynthesis monooxygenase YP_001189927.1 4877825 D 399739 CDS YP_001189928.1 146309463 5107144 4878216..4878533 1 NC_009439.1 hypothetical protein 4878533 5107144 Pmen_4449 Pseudomonas mendocina ymp hypothetical protein YP_001189928.1 4878216 D 399739 CDS YP_001189929.1 146309464 5107145 4878627..4880924 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 4880924 5107145 Pmen_4450 Pseudomonas mendocina ymp PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001189929.1 4878627 D 399739 CDS YP_001189930.1 146309465 5107146 4880921..4882516 1 NC_009439.1 TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; methyl-accepting chemotaxis sensory transducer 4882516 5107146 Pmen_4451 Pseudomonas mendocina ymp methyl-accepting chemotaxis sensory transducer YP_001189930.1 4880921 D 399739 CDS YP_001189931.1 146309466 5107147 4882641..4883642 1 NC_009439.1 PFAM: luciferase family protein; luciferase family protein 4883642 5107147 Pmen_4452 Pseudomonas mendocina ymp luciferase family protein YP_001189931.1 4882641 D 399739 CDS YP_001189932.1 146309467 5107148 4883723..4884148 1 NC_009439.1 PFAM: OsmC family protein; OsmC family protein 4884148 5107148 Pmen_4453 Pseudomonas mendocina ymp OsmC family protein YP_001189932.1 4883723 D 399739 CDS YP_001189933.1 146309468 5107149 complement(4884169..4884588) 1 NC_009439.1 hypothetical protein 4884588 5107149 Pmen_4454 Pseudomonas mendocina ymp hypothetical protein YP_001189933.1 4884169 R 399739 CDS YP_001189934.1 146309469 5107150 4884674..4885735 1 NC_009439.1 aminopeptidase-like protein 4885735 5107150 Pmen_4455 Pseudomonas mendocina ymp aminopeptidase-like protein YP_001189934.1 4884674 D 399739 CDS YP_001189935.1 146309470 5107151 4885799..4886029 1 NC_009439.1 PFAM: protein of unknown function DUF1161; hypothetical protein 4886029 5107151 Pmen_4456 Pseudomonas mendocina ymp hypothetical protein YP_001189935.1 4885799 D 399739 CDS YP_001189936.1 146309471 5107152 complement(4886113..4886760) 1 NC_009439.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 4886760 5107152 Pmen_4457 Pseudomonas mendocina ymp HAD family hydrolase YP_001189936.1 4886113 R 399739 CDS YP_001189937.1 146309472 5107153 complement(4886819..4887787) 1 NC_009439.1 hypothetical protein 4887787 5107153 Pmen_4458 Pseudomonas mendocina ymp hypothetical protein YP_001189937.1 4886819 R 399739 CDS YP_001189938.1 146309473 5107154 complement(4888009..4888497) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4888497 5107154 Pmen_4459 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001189938.1 4888009 R 399739 CDS YP_001189939.1 146309474 5107155 complement(4888494..4889036) 1 NC_009439.1 carbonic anhydrase 4889036 5107155 Pmen_4460 Pseudomonas mendocina ymp carbonic anhydrase YP_001189939.1 4888494 R 399739 CDS YP_001189940.1 146309475 5107156 4889173..4891221 1 NC_009439.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; oligopeptidase A 4891221 5107156 Pmen_4461 Pseudomonas mendocina ymp oligopeptidase A YP_001189940.1 4889173 D 399739 CDS YP_001189941.1 146309476 5107157 4891218..4891505 1 NC_009439.1 nucleic acid binding protein 4891505 5107157 Pmen_4462 Pseudomonas mendocina ymp nucleic acid binding protein YP_001189941.1 4891218 D 399739 CDS YP_001189942.1 146309477 5107158 4891532..4892620 1 NC_009439.1 hypothetical protein 4892620 5107158 Pmen_4463 Pseudomonas mendocina ymp hypothetical protein YP_001189942.1 4891532 D 399739 CDS YP_001189943.1 146309478 5107159 complement(4892636..4893427) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC family transcriptional regulator 4893427 5107159 Pmen_4464 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189943.1 4892636 R 399739 CDS YP_001189944.1 146309479 5107160 4893509..4894510 1 NC_009439.1 PFAM: Bile acid:sodium symporter; bile acid:sodium symporter 4894510 5107160 Pmen_4465 Pseudomonas mendocina ymp bile acid:sodium symporter YP_001189944.1 4893509 D 399739 CDS YP_001189945.1 146309480 5107161 4894629..4895690 1 NC_009439.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 4895690 5107161 Pmen_4466 Pseudomonas mendocina ymp radical SAM domain-containing protein YP_001189945.1 4894629 D 399739 CDS YP_001189946.1 146309481 5107162 4895782..4896687 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC family transcriptional regulator 4896687 5107162 Pmen_4467 Pseudomonas mendocina ymp AraC family transcriptional regulator YP_001189946.1 4895782 D 399739 CDS YP_001189947.1 146309482 5107163 4897003..4898313 1 NC_009439.1 PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 4898313 5107163 Pmen_4468 Pseudomonas mendocina ymp extracellular solute-binding protein YP_001189947.1 4897003 D 399739 CDS YP_001189948.1 146309483 5107164 4898452..4899387 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4899387 5107164 Pmen_4469 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189948.1 4898452 D 399739 CDS YP_001189949.1 146309484 5107165 4899398..4900231 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4900231 5107165 Pmen_4470 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189949.1 4899398 D 399739 CDS YP_001189950.1 146309485 5107166 4900244..4901347 1 NC_009439.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 4901347 5107166 Pmen_4471 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189950.1 4900244 D 399739 CDS YP_001189951.1 146309486 5107167 4901374..4902849 1 NC_009439.1 PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; fructuronate reductase 4902849 5107167 Pmen_4472 Pseudomonas mendocina ymp fructuronate reductase YP_001189951.1 4901374 D 399739 CDS YP_001189952.1 146309487 5107168 4902853..4904352 1 NC_009439.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; xylulokinase 4904352 5107168 Pmen_4473 Pseudomonas mendocina ymp xylulokinase YP_001189952.1 4902853 D 399739 CDS YP_001189953.1 146309488 5107169 4904381..4905328 1 NC_009439.1 PFAM: PfkB domain protein; ribokinase-like domain-containing protein 4905328 5107169 Pmen_4474 Pseudomonas mendocina ymp ribokinase-like domain-containing protein YP_001189953.1 4904381 D 399739 CDS YP_001189954.1 146309489 5107170 4905508..4906236 1 NC_009439.1 PFAM: carbonic anhydrase; carbonate dehydratase 4906236 5107170 Pmen_4475 Pseudomonas mendocina ymp carbonate dehydratase YP_001189954.1 4905508 D 399739 CDS YP_001189955.1 146309490 5107171 complement(4906354..4906656) 1 NC_009439.1 hypothetical protein 4906656 5107171 Pmen_4476 Pseudomonas mendocina ymp hypothetical protein YP_001189955.1 4906354 R 399739 CDS YP_001189956.1 146309491 5107172 complement(4906658..4907599) 1 NC_009439.1 PFAM: protein of unknown function DUF897; hypothetical protein 4907599 5107172 Pmen_4477 Pseudomonas mendocina ymp hypothetical protein YP_001189956.1 4906658 R 399739 CDS YP_001189957.1 146309492 5107173 complement(4907937..4909745) 1 NC_009439.1 catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 4909745 5107173 Pmen_4478 Pseudomonas mendocina ymp pyruvate carboxylase subunit B YP_001189957.1 4907937 R 399739 CDS YP_001189958.1 146309493 5107174 complement(4909762..4911177) 1 NC_009439.1 biotin carboxylase; with subunit B, the carboxyltansferase/biotincarboxyl carrier subunit catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit A 4911177 5107174 Pmen_4479 Pseudomonas mendocina ymp pyruvate carboxylase subunit A YP_001189958.1 4909762 R 399739 CDS YP_001189959.1 146309494 5107175 4911330..4912292 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4912292 5107175 Pmen_4480 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189959.1 4911330 D 399739 CDS YP_001189960.1 146309495 5107176 4912374..4913561 1 NC_009439.1 PFAM: protein of unknown function DUF182; hypothetical protein 4913561 5107176 Pmen_4481 Pseudomonas mendocina ymp hypothetical protein YP_001189960.1 4912374 D 399739 CDS YP_001189961.1 146309496 5107177 complement(4913767..4916010) 1 NC_009439.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 4916010 5107177 Pmen_4482 Pseudomonas mendocina ymp molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001189961.1 4913767 R 399739 CDS YP_001189962.1 146309497 5107178 complement(4916019..4916477) 1 NC_009439.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 4916477 5107178 Pmen_4483 Pseudomonas mendocina ymp 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001189962.1 4916019 R 399739 CDS YP_001189963.1 146309498 5107179 complement(4916657..4916869) 1 NC_009439.1 hypothetical protein 4916869 5107179 Pmen_4484 Pseudomonas mendocina ymp hypothetical protein YP_001189963.1 4916657 R 399739 CDS YP_001189964.1 146309499 5107180 complement(4916968..4917834) 1 NC_009439.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator 4917834 5107180 Pmen_4485 Pseudomonas mendocina ymp RpiR family transcriptional regulator YP_001189964.1 4916968 R 399739 CDS YP_001189965.1 146309500 5107181 4918054..4919553 1 NC_009439.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 4919553 5107181 Pmen_4486 Pseudomonas mendocina ymp glucose-6-phosphate 1-dehydrogenase YP_001189965.1 4918054 D 399739 CDS YP_001189966.1 146309501 5107182 4919837..4920355 1 NC_009439.1 PFAM: protein of unknown function DUF796; hypothetical protein 4920355 5107182 Pmen_4487 Pseudomonas mendocina ymp hypothetical protein YP_001189966.1 4919837 D 399739 CDS YP_001189967.1 146309502 5107183 4920544..4922652 1 NC_009439.1 PFAM: Rhs element Vgr protein; Rhs element Vgr protein 4922652 5107183 Pmen_4488 Pseudomonas mendocina ymp Rhs element Vgr protein YP_001189967.1 4920544 D 399739 CDS YP_001189968.1 146309503 5107184 4922628..4923494 1 NC_009439.1 hypothetical protein 4923494 5107184 Pmen_4489 Pseudomonas mendocina ymp hypothetical protein YP_001189968.1 4922628 D 399739 CDS YP_001189969.1 146309504 5107185 4923506..4925740 1 NC_009439.1 PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM 4925740 5107185 Pmen_4490 Pseudomonas mendocina ymp peptidoglycan-binding LysM YP_001189969.1 4923506 D 399739 CDS YP_001189970.1 146309505 5106949 4925830..4927131 1 NC_009439.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 4927131 5106949 Pmen_4491 Pseudomonas mendocina ymp transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001189970.1 4925830 D 399739 CDS YP_001189971.1 146309506 5106950 4927132..4927488 1 NC_009439.1 hypothetical protein 4927488 5106950 Pmen_4492 Pseudomonas mendocina ymp hypothetical protein YP_001189971.1 4927132 D 399739 CDS YP_001189972.1 146309507 5106951 complement(4927523..4928515) 1 NC_009439.1 PFAM: protein of unknown function DUF323; hypothetical protein 4928515 5106951 Pmen_4493 Pseudomonas mendocina ymp hypothetical protein YP_001189972.1 4927523 R 399739 CDS YP_001189973.1 146309508 5106952 complement(4928694..4929944) 1 NC_009439.1 PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 4929944 5106952 Pmen_4494 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001189973.1 4928694 R 399739 CDS YP_001189974.1 146309509 5106953 complement(4930091..4931143) 1 NC_009439.1 PFAM: periplasmic solute binding protein; periplasmic solute binding protein 4931143 5106953 Pmen_4495 Pseudomonas mendocina ymp periplasmic solute binding protein YP_001189974.1 4930091 R 399739 CDS YP_001189975.1 146309510 5106954 4931210..4931695 1 NC_009439.1 ferric uptake regulator family protein 4931695 5106954 Pmen_4496 Pseudomonas mendocina ymp ferric uptake regulator family protein YP_001189975.1 4931210 D 399739 CDS YP_001189976.1 146309511 5106955 4931692..4932480 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 4932480 5106955 Pmen_4497 Pseudomonas mendocina ymp ABC transporter-like protein YP_001189976.1 4931692 D 399739 CDS YP_001189977.1 146309512 5106956 4932480..4933268 1 NC_009439.1 PFAM: ABC-3 protein; ABC-3 protein 4933268 5106956 Pmen_4498 Pseudomonas mendocina ymp ABC-3 protein YP_001189977.1 4932480 D 399739 CDS YP_001189978.1 146309513 5106957 4933328..4934239 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4934239 5106957 Pmen_4499 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001189978.1 4933328 D 399739 CDS YP_001189979.1 146309514 5106958 4934341..4935387 1 NC_009439.1 nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein 4935387 5106958 Pmen_4500 Pseudomonas mendocina ymp nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein YP_001189979.1 4934341 D 399739 CDS YP_001189980.1 146309515 5106959 4935384..4936079 1 NC_009439.1 PFAM: isochorismatase hydrolase; isochorismatase hydrolase 4936079 5106959 Pmen_4501 Pseudomonas mendocina ymp isochorismatase hydrolase YP_001189980.1 4935384 D 399739 CDS YP_001189981.1 146309516 5106960 4936144..4937028 1 NC_009439.1 PFAM: Tetratricopeptide TPR_2 repeat protein; hypothetical protein 4937028 5106960 Pmen_4502 Pseudomonas mendocina ymp hypothetical protein YP_001189981.1 4936144 D 399739 CDS YP_001189982.1 146309517 5106961 4937201..4938208 1 NC_009439.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 4938208 metN 5106961 metN Pseudomonas mendocina ymp DL-methionine transporter ATP-binding subunit YP_001189982.1 4937201 D 399739 CDS YP_001189983.1 146309518 5106962 4938208..4938876 1 NC_009439.1 PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 4938876 5106962 Pmen_4504 Pseudomonas mendocina ymp binding-protein-dependent transport system inner membrane protein YP_001189983.1 4938208 D 399739 CDS YP_001189984.1 146309519 5106963 4938934..4939704 1 NC_009439.1 PFAM: NLPA lipoprotein; NLPA lipoprotein 4939704 5106963 Pmen_4505 Pseudomonas mendocina ymp NLPA lipoprotein YP_001189984.1 4938934 D 399739 CDS YP_001189985.1 146309520 5106964 complement(4940040..4940438) 1 NC_009439.1 PFAM: protein of unknown function DUF454; hypothetical protein 4940438 5106964 Pmen_4506 Pseudomonas mendocina ymp hypothetical protein YP_001189985.1 4940040 R 399739 CDS YP_001189986.1 146309521 5106965 complement(4940431..4941021) 1 NC_009439.1 PFAM: Haem oxygenase; heme oxygenase 4941021 5106965 Pmen_4507 Pseudomonas mendocina ymp heme oxygenase YP_001189986.1 4940431 R 399739 CDS YP_001189987.1 146309522 5106966 4941261..4941782 1 NC_009439.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor 4941782 5106966 Pmen_4508 Pseudomonas mendocina ymp ECF subfamily RNA polymerase sigma-24 factor YP_001189987.1 4941261 D 399739 CDS YP_001189988.1 146309523 5106967 4941779..4942795 1 NC_009439.1 PFAM: FecR protein; putative FecR protein 4942795 5106967 Pmen_4509 Pseudomonas mendocina ymp putative FecR protein YP_001189988.1 4941779 D 399739 CDS YP_001189989.1 146309524 5106968 4942902..4945505 1 NC_009439.1 TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; Secretin/TonB, short N-terminal domain; TonB-dependent receptor, plug; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor 4945505 5106968 Pmen_4510 Pseudomonas mendocina ymp TonB-dependent hemoglobin/transferrin/lactoferrin family receptor YP_001189989.1 4942902 D 399739 CDS YP_001189990.1 146309525 5106969 complement(4945563..4946288) 1 NC_009439.1 hypothetical protein 4946288 5106969 Pmen_4511 Pseudomonas mendocina ymp hypothetical protein YP_001189990.1 4945563 R 399739 CDS YP_001189991.1 146309526 5106970 complement(4946347..4949229) 1 NC_009439.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 4949229 5106970 Pmen_4512 Pseudomonas mendocina ymp PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001189991.1 4946347 R 399739 CDS YP_001189992.1 146309527 5106971 4949534..4951717 1 NC_009439.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 4951717 uvrD 5106971 uvrD Pseudomonas mendocina ymp DNA-dependent helicase II YP_001189992.1 4949534 D 399739 CDS YP_001189993.1 146309528 5106972 4951741..4952835 1 NC_009439.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 4952835 5106972 Pmen_4514 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001189993.1 4951741 D 399739 CDS YP_001189994.1 146309529 5106973 4952886..4953968 1 NC_009439.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 4953968 5106973 Pmen_4515 Pseudomonas mendocina ymp TRAP dicarboxylate transporter subunit DctP YP_001189994.1 4952886 D 399739 CDS YP_001189995.1 146309530 5106974 4954114..4954695 1 NC_009439.1 hypothetical protein 4954695 5106974 Pmen_4516 Pseudomonas mendocina ymp hypothetical protein YP_001189995.1 4954114 D 399739 CDS YP_001189996.1 146309531 5106975 4954879..4955733 1 NC_009439.1 PFAM: import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 4955733 5106975 Pmen_4517 Pseudomonas mendocina ymp import inner membrane translocase subunit Tim44 YP_001189996.1 4954879 D 399739 CDS YP_001189997.1 146309532 5106976 complement(4955800..4956249) 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 4956249 5106976 Pmen_4518 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001189997.1 4955800 R 399739 CDS YP_001189998.1 146309533 5106977 complement(4956249..4957568) 1 NC_009439.1 hypothetical protein 4957568 5106977 Pmen_4519 Pseudomonas mendocina ymp hypothetical protein YP_001189998.1 4956249 R 399739 CDS YP_001189999.1 146309534 5106978 complement(4957571..4958020) 1 NC_009439.1 hypothetical protein 4958020 5106978 Pmen_4520 Pseudomonas mendocina ymp hypothetical protein YP_001189999.1 4957571 R 399739 CDS YP_001190000.1 146309535 5106979 complement(4958022..4959692) 1 NC_009439.1 hypothetical protein 4959692 5106979 Pmen_4521 Pseudomonas mendocina ymp hypothetical protein YP_001190000.1 4958022 R 399739 CDS YP_001190001.1 146309536 5106980 4959868..4960275 1 NC_009439.1 hypothetical protein 4960275 5106980 Pmen_4522 Pseudomonas mendocina ymp hypothetical protein YP_001190001.1 4959868 D 399739 CDS YP_001190002.1 146309537 5106981 complement(4960460..4961113) 1 NC_009439.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 4961113 5106981 Pmen_4523 Pseudomonas mendocina ymp GntR family transcriptional regulator YP_001190002.1 4960460 R 399739 CDS YP_001190003.1 146309538 5106982 4961319..4962710 1 NC_009439.1 PFAM: aminotransferase class-III; aminotransferase 4962710 5106982 Pmen_4524 Pseudomonas mendocina ymp aminotransferase YP_001190003.1 4961319 D 399739 CDS YP_001190004.1 146309539 5106983 4962784..4964151 1 NC_009439.1 PFAM: glutamine synthetase, catalytic region; L-glutamine synthetase 4964151 5106983 Pmen_4525 Pseudomonas mendocina ymp L-glutamine synthetase YP_001190004.1 4962784 D 399739 CDS YP_001190005.1 146309540 5106984 complement(4964159..4965412) 1 NC_009439.1 hypothetical protein 4965412 5106984 Pmen_4526 Pseudomonas mendocina ymp hypothetical protein YP_001190005.1 4964159 R 399739 CDS YP_001190006.1 146309541 5106985 complement(4965409..4966125) 1 NC_009439.1 hypothetical protein 4966125 5106985 Pmen_4527 Pseudomonas mendocina ymp hypothetical protein YP_001190006.1 4965409 R 399739 CDS YP_001190007.1 146309542 5106986 4966231..4966716 1 NC_009439.1 PFAM: thioesterase superfamily protein; thioesterase superfamily protein 4966716 5106986 Pmen_4528 Pseudomonas mendocina ymp thioesterase superfamily protein YP_001190007.1 4966231 D 399739 CDS YP_001190008.1 146309543 5106987 complement(4966796..4967329) 1 NC_009439.1 hypothetical protein 4967329 5106987 Pmen_4529 Pseudomonas mendocina ymp hypothetical protein YP_001190008.1 4966796 R 399739 CDS YP_001190009.1 146309544 5106988 4967452..4967847 1 NC_009439.1 hypothetical protein 4967847 5106988 Pmen_4530 Pseudomonas mendocina ymp hypothetical protein YP_001190009.1 4967452 D 399739 CDS YP_001190010.1 146309545 5106989 complement(4967852..4968211) 1 NC_009439.1 hypothetical protein 4968211 5106989 Pmen_4531 Pseudomonas mendocina ymp hypothetical protein YP_001190010.1 4967852 R 399739 CDS YP_001190011.1 146309546 5106990 complement(4968215..4969093) 1 NC_009439.1 PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 4969093 5106990 Pmen_4532 Pseudomonas mendocina ymp alpha/beta hydrolase fold protein YP_001190011.1 4968215 R 399739 CDS YP_001190012.1 146309547 5106991 complement(4969130..4970104) 1 NC_009439.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 4970104 5106991 Pmen_4533 Pseudomonas mendocina ymp cobalamin synthesis protein, P47K YP_001190012.1 4969130 R 399739 CDS YP_001190013.1 146309548 5106992 4970200..4970550 1 NC_009439.1 hypothetical protein 4970550 5106992 Pmen_4534 Pseudomonas mendocina ymp hypothetical protein YP_001190013.1 4970200 D 399739 CDS YP_001190014.1 146309549 5106993 complement(4970755..4971399) 1 NC_009439.1 hypothetical protein 4971399 5106993 Pmen_4535 Pseudomonas mendocina ymp hypothetical protein YP_001190014.1 4970755 R 399739 CDS YP_001190015.1 146309550 5106994 complement(4971399..4972604) 1 NC_009439.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 4972604 5106994 Pmen_4536 Pseudomonas mendocina ymp cobalamin synthesis protein, P47K YP_001190015.1 4971399 R 399739 CDS YP_001190016.1 146309551 5106995 complement(4972620..4973042) 1 NC_009439.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator 4973042 5106995 Pmen_4537 Pseudomonas mendocina ymp TraR/DksA family transcriptional regulator YP_001190016.1 4972620 R 399739 CDS YP_001190017.1 146309552 5106996 4973114..4974004 1 NC_009439.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; putative GTP cyclohydrolase 4974004 5106996 Pmen_4538 Pseudomonas mendocina ymp putative GTP cyclohydrolase YP_001190017.1 4973114 D 399739 CDS YP_001190018.1 146309553 5106997 4974008..4974427 1 NC_009439.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 4974427 5106997 Pmen_4539 Pseudomonas mendocina ymp phosphoribosyl-AMP cyclohydrolase YP_001190018.1 4974008 D 399739 CDS YP_001190019.1 146309554 5106998 4974424..4974669 1 NC_009439.1 PFAM: protein of unknown function DUF37; hypothetical protein 4974669 5106998 Pmen_4540 Pseudomonas mendocina ymp hypothetical protein YP_001190019.1 4974424 D 399739 CDS YP_001190020.1 146309555 5106999 4974662..4976002 1 NC_009439.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 4976002 5106999 Pmen_4541 Pseudomonas mendocina ymp dihydroorotase YP_001190020.1 4974662 D 399739 CDS YP_001190021.1 146309556 5107000 complement(4976091..4979495) 1 NC_009439.1 PFAM: Hemolysin-type calcium-binding region; peptidase M10A and M12B, matrixin and adamalysin; SMART: peptidase, metallopeptidase; serralysin 4979495 5107000 Pmen_4542 Pseudomonas mendocina ymp serralysin YP_001190021.1 4976091 R 399739 CDS YP_001190022.1 146309557 5107001 4979855..4981774 1 NC_009439.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase putative; hypothetical protein 4981774 5107001 Pmen_4543 Pseudomonas mendocina ymp hypothetical protein YP_001190022.1 4979855 D 399739 CDS YP_001190023.1 146309558 5107002 4981771..4982478 1 NC_009439.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 4982478 5107002 Pmen_4544 Pseudomonas mendocina ymp DNA polymerase III subunit epsilon YP_001190023.1 4981771 D 399739 CDS YP_001190024.1 146309559 5107003 4982511..4982750 1 NC_009439.1 hypothetical protein 4982750 5107003 Pmen_4545 Pseudomonas mendocina ymp hypothetical protein YP_001190024.1 4982511 D 399739 CDS YP_001190025.1 146309560 5107004 complement(4982884..4983786) 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 4983786 5107004 Pmen_4546 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001190025.1 4982884 R 399739 CDS YP_001190026.1 146309561 5107005 4983931..4985319 1 NC_009439.1 TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine ammonia-lyase 4985319 5107005 Pmen_4547 Pseudomonas mendocina ymp L-serine ammonia-lyase YP_001190026.1 4983931 D 399739 CDS YP_001190027.1 146309562 5107006 complement(4985650..4987305) 1 NC_009439.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 4987305 5107006 Pmen_4548 Pseudomonas mendocina ymp choline/carnitine/betaine transporter YP_001190027.1 4985650 R 399739 CDS YP_001190028.1 146309563 5107007 complement(4987945..4988328) 1 NC_009439.1 hypothetical protein 4988328 5107007 Pmen_4549 Pseudomonas mendocina ymp hypothetical protein YP_001190028.1 4987945 R 399739 CDS YP_001190029.1 146309564 5107008 complement(4988313..4989095) 1 NC_009439.1 hypothetical protein 4989095 5107008 Pmen_4550 Pseudomonas mendocina ymp hypothetical protein YP_001190029.1 4988313 R 399739 CDS YP_001190030.1 146309565 5107009 complement(4989092..4989649) 1 NC_009439.1 PFAM: PAAR repeat-containing protein; PAAR repeat-containing protein 4989649 5107009 Pmen_4551 Pseudomonas mendocina ymp PAAR repeat-containing protein YP_001190030.1 4989092 R 399739 CDS YP_001190031.1 146309566 5107010 complement(4990023..4991690) 1 NC_009439.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; choline/carnitine/betaine transporter 4991690 5107010 Pmen_4552 Pseudomonas mendocina ymp choline/carnitine/betaine transporter YP_001190031.1 4990023 R 399739 CDS YP_001190032.1 146309567 5107011 4991972..4993417 1 NC_009439.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 4993417 cls 5107011 cls Pseudomonas mendocina ymp cardiolipin synthetase YP_001190032.1 4991972 D 399739 CDS YP_001190033.1 146309568 5107012 4993536..4994267 1 NC_009439.1 hypothetical protein 4994267 5107012 Pmen_4554 Pseudomonas mendocina ymp hypothetical protein YP_001190033.1 4993536 D 399739 CDS YP_001190034.1 146309569 5107013 complement(4994250..4995461) 1 NC_009439.1 PFAM: PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 4995461 5107013 Pmen_4555 Pseudomonas mendocina ymp PepSY-associated TM helix domain-containing protein YP_001190034.1 4994250 R 399739 CDS YP_001190035.1 146309570 5107014 complement(4995512..4997674) 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 4997674 5107014 Pmen_4556 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001190035.1 4995512 R 399739 CDS YP_001190036.1 146309571 5107015 complement(4997767..4998360) 1 NC_009439.1 hypothetical protein 4998360 5107015 Pmen_4557 Pseudomonas mendocina ymp hypothetical protein YP_001190036.1 4997767 R 399739 CDS YP_001190037.1 146309572 5107016 complement(4998425..4998832) 1 NC_009439.1 hypothetical protein 4998832 5107016 Pmen_4558 Pseudomonas mendocina ymp hypothetical protein YP_001190037.1 4998425 R 399739 CDS YP_001190038.1 146309573 5107017 complement(4998829..5000856) 1 NC_009439.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP transporter, 4TM/12TM fusion protein 5000856 5107017 Pmen_4559 Pseudomonas mendocina ymp TRAP transporter, 4TM/12TM fusion protein YP_001190038.1 4998829 R 399739 CDS YP_001190039.1 146309574 5107018 complement(5001129..5002082) 1 NC_009439.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 5002082 5107018 Pmen_4560 Pseudomonas mendocina ymp TRAP transporter solute receptor TAXI family protein YP_001190039.1 5001129 R 399739 CDS YP_001190040.1 146309575 5107019 complement(5002560..5003900) 1 NC_009439.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma-54 specific Fis family transcriptional regulator 5003900 5107019 Pmen_4561 Pseudomonas mendocina ymp two component sigma-54 specific Fis family transcriptional regulator YP_001190040.1 5002560 R 399739 CDS YP_001190041.1 146309576 5107020 complement(5004062..5005837) 1 NC_009439.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; integral membrane sensor signal transduction histidine kinase 5005837 5107020 Pmen_4562 Pseudomonas mendocina ymp integral membrane sensor signal transduction histidine kinase YP_001190041.1 5004062 R 399739 CDS YP_001190042.1 146309577 5107021 complement(5005847..5007031) 1 NC_009439.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 5007031 5107021 Pmen_4563 Pseudomonas mendocina ymp cyclopropane-fatty-acyl-phospholipid synthase YP_001190042.1 5005847 R 399739 CDS YP_001190043.1 146309578 5107022 complement(5007117..5008139) 1 NC_009439.1 PFAM: transport system permease protein; inner-membrane translocator; transport system permease 5008139 5107022 Pmen_4564 Pseudomonas mendocina ymp transport system permease YP_001190043.1 5007117 R 399739 CDS YP_001190044.1 146309579 5107023 complement(5008136..5009164) 1 NC_009439.1 PFAM: periplasmic binding protein; periplasmic binding protein 5009164 5107023 Pmen_4565 Pseudomonas mendocina ymp periplasmic binding protein YP_001190044.1 5008136 R 399739 CDS YP_001190045.1 146309580 5107024 complement(5009164..5010006) 1 NC_009439.1 PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 5010006 5107024 Pmen_4566 Pseudomonas mendocina ymp ABC transporter-like protein YP_001190045.1 5009164 R 399739 CDS YP_001190046.1 146309581 5107025 complement(5010050..5012290) 1 NC_009439.1 TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent siderophore receptor 5012290 5107025 Pmen_4567 Pseudomonas mendocina ymp TonB-dependent siderophore receptor YP_001190046.1 5010050 R 399739 CDS YP_001190047.1 146309582 5107026 complement(5012719..5013444) 1 NC_009439.1 hypothetical protein 5013444 5107026 Pmen_4568 Pseudomonas mendocina ymp hypothetical protein YP_001190047.1 5012719 R 399739 CDS YP_001190048.1 146309583 5107027 complement(5013659..5014378) 1 NC_009439.1 CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 5014378 5107027 Pmen_4569 Pseudomonas mendocina ymp cobalt-precorrin-6x reductase YP_001190048.1 5013659 R 399739 CDS YP_001190049.1 146309584 5106881 complement(5014375..5015577) 1 NC_009439.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6Y C5,15-methyltransferase subunit CbiE 5015577 5106881 Pmen_4570 Pseudomonas mendocina ymp precorrin-6Y C5,15-methyltransferase subunit CbiE YP_001190049.1 5014375 R 399739 CDS YP_001190050.1 146309585 5106882 5015944..5017353 1 NC_009439.1 TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; precorrin-3B synthase 5017353 5106882 Pmen_4571 Pseudomonas mendocina ymp precorrin-3B synthase YP_001190050.1 5015944 D 399739 CDS YP_001190051.1 146309586 5106883 5017346..5017972 1 NC_009439.1 catalyzes the interconversion of precorrin-8X and hydrogenobyrinate; precorrin-8X methylmutase 5017972 cobH 5106883 cobH Pseudomonas mendocina ymp precorrin-8X methylmutase YP_001190051.1 5017346 D 399739 CDS YP_001190052.1 146309587 5106884 5017972..5018712 1 NC_009439.1 catalyzes the formation of precorrin-3 from precorrin-2; precorrin-2 C(20)-methyltransferase 5018712 5106884 Pmen_4573 Pseudomonas mendocina ymp precorrin-2 C(20)-methyltransferase YP_001190052.1 5017972 D 399739 CDS YP_001190053.1 146309588 5106885 5018940..5020595 1 NC_009439.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; precorrin-6Y C5,15-methyltransferase/ precorrin-3 methyltransferase 5020595 5106885 Pmen_4574 Pseudomonas mendocina ymp precorrin-6Y C5,15-methyltransferase/ precorrin-3 methyltransferase YP_001190053.1 5018940 D 399739 CDS YP_001190054.1 146309589 5106886 complement(5020694..5021674) 1 NC_009439.1 PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; transcriptional regulator 5021674 5106886 Pmen_4575 Pseudomonas mendocina ymp transcriptional regulator YP_001190054.1 5020694 R 399739 CDS YP_001190055.1 146309590 5106887 5021769..5022380 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 5022380 5106887 Pmen_4576 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001190055.1 5021769 D 399739 CDS YP_001190056.1 146309591 5106888 complement(5022393..5022962) 1 NC_009439.1 PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein 5022962 5106888 Pmen_4577 Pseudomonas mendocina ymp flavin reductase domain-containing protein YP_001190056.1 5022393 R 399739 CDS YP_001190057.1 146309592 5106889 complement(5023046..5023840) 1 NC_009439.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 5023840 5106889 Pmen_4578 Pseudomonas mendocina ymp short-chain dehydrogenase/reductase SDR YP_001190057.1 5023046 R 399739 CDS YP_001190058.1 146309593 5106890 5023930..5024841 1 NC_009439.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 5024841 5106890 Pmen_4579 Pseudomonas mendocina ymp LysR family transcriptional regulator YP_001190058.1 5023930 D 399739 CDS YP_001190059.1 146309594 5106891 5024943..5026247 1 NC_009439.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator superfamily transporter 5026247 5106891 Pmen_4580 Pseudomonas mendocina ymp major facilitator superfamily transporter YP_001190059.1 5024943 D 399739 CDS YP_001190060.1 146309595 5106892 5026415..5028571 1 NC_009439.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 5028571 5106892 Pmen_4581 Pseudomonas mendocina ymp TonB-dependent receptor YP_001190060.1 5026415 D 399739 CDS YP_001190061.1 146309596 5106893 5028571..5029083 1 NC_009439.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 5029083 5106893 Pmen_4582 Pseudomonas mendocina ymp N-acetyltransferase GCN5 YP_001190061.1 5028571 D 399739 CDS YP_001190062.1 146309597 5106894 complement(5029182..5029943) 1 NC_009439.1 catalyzes the formation of precorrin 6x from precorrin 5; precorrin 6A synthase 5029943 5106894 Pmen_4583 Pseudomonas mendocina ymp precorrin 6A synthase YP_001190062.1 5029182 R 399739 CDS YP_001190063.1 146309598 5106895 complement(5029940..5030581) 1 NC_009439.1 Mg-chelatase subunit ChlD-like protein 5030581 5106895 Pmen_4584 Pseudomonas mendocina ymp Mg-chelatase subunit ChlD-like protein YP_001190063.1 5029940 R 399739 CDS YP_001190064.1 146309599 5106896 complement(5030671..5031678) 1 NC_009439.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; protoporphyrin IX magnesium-chelatase 5031678 5106896 Pmen_4585 Pseudomonas mendocina ymp protoporphyrin IX magnesium-chelatase YP_001190064.1 5030671 R 399739 CDS YP_001190065.1 146309600 5106897 complement(5031953..5035699) 1 NC_009439.1 with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; cobaltochelatase subunit CobN 5035699 cobN 5106897 cobN Pseudomonas mendocina ymp cobaltochelatase subunit CobN YP_001190065.1 5031953 R 399739 CDS YP_001190066.1 146309601 5106898 complement(5035791..5036840) 1 NC_009439.1 TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin biosynthesis protein CobW 5036840 5106898 Pmen_4587 Pseudomonas mendocina ymp cobalamin biosynthesis protein CobW YP_001190066.1 5035791 R 399739 CDS YP_001190067.1 146309602 5106899 5037217..5037645 1 NC_009439.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; cobalamin (vitamin B12) biosynthesis protein CbiG 5037645 5106899 Pmen_4588 Pseudomonas mendocina ymp cobalamin (vitamin B12) biosynthesis protein CbiG YP_001190067.1 5037217 D 399739 CDS YP_001190068.1 146309603 5106900 5037642..5038397 1 NC_009439.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 5038397 5106900 Pmen_4589 Pseudomonas mendocina ymp precorrin-4 C(11)-methyltransferase YP_001190068.1 5037642 D 399739 CDS YP_001190069.1 146309604 5106901 complement(5038619..5038849) 1 NC_009439.1 hypothetical protein 5038849 5106901 Pmen_4590 Pseudomonas mendocina ymp hypothetical protein YP_001190069.1 5038619 R 399739 CDS YP_001190070.1 146309605 5106902 5039021..5039233 1 NC_009439.1 hypothetical protein 5039233 5106902 Pmen_4591 Pseudomonas mendocina ymp hypothetical protein YP_001190070.1 5039021 D 399739 CDS YP_001190071.1 146309606 5106903 5039230..5039985 1 NC_009439.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 5039985 5106903 Pmen_4592 Pseudomonas mendocina ymp methionine aminopeptidase YP_001190071.1 5039230 D 399739 CDS YP_001190072.1 146309607 5106904 complement(5040276..5041772) 1 NC_009439.1 TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase 5041772 5106904 Pmen_4593 Pseudomonas mendocina ymp methylmalonate-semialdehyde dehydrogenase YP_001190072.1 5040276 R 399739 CDS YP_001190073.1 146309608 5106905 complement(5041839..5042993) 1 NC_009439.1 PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 5042993 5106905 Pmen_4594 Pseudomonas mendocina ymp iron-containing alcohol dehydrogenase YP_001190073.1 5041839 R 399739 CDS YP_001190074.1 146309609 5106906 5043426..5044199 1 NC_009439.1 PFAM: regulatory protein, IclR; IclR family transcriptional regulator 5044199 5106906 Pmen_4595 Pseudomonas mendocina ymp IclR family transcriptional regulator YP_001190074.1 5043426 D 399739 CDS YP_001190075.1 146309610 5106907 5044792..5045910 1 NC_009439.1 branched chain amino acid ABC transporter substrate-binding protein 5045910 5106907 Pmen_4596 Pseudomonas mendocina ymp branched chain amino acid ABC transporter substrate-binding protein YP_001190075.1 5044792 D 399739 CDS YP_001190076.1 146309611 5106908 5045922..5046521 1 NC_009439.1 PFAM: ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 5046521 5106908 Pmen_4597 Pseudomonas mendocina ymp response regulator receiver/ANTAR domain-containing protein YP_001190076.1 5045922 D 399739 CDS YP_001190077.1 146309612 5106909 5046653..5048134 1 NC_009439.1 PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 5048134 5106909 Pmen_4598 Pseudomonas mendocina ymp cytosine/purines uracil thiamine allantoin permease YP_001190077.1 5046653 D 399739 CDS YP_001190078.1 146309613 5106910 5048145..5049866 1 NC_009439.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 5049866 5106910 Pmen_4599 Pseudomonas mendocina ymp nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001190078.1 5048145 D 399739 CDS YP_001190079.1 146309614 5106728 complement(5050932..5051228) 1 NC_009439.1 PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 5051228 5106728 Pmen_4601 Pseudomonas mendocina ymp transposase IS3/IS911 family protein YP_001190079.1 5050932 R 399739 CDS YP_001190080.1 146309615 5106912 complement(5051451..5053301) 1 NC_009439.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 5053301 5106912 Pmen_4602 Pseudomonas mendocina ymp glucosamine--fructose-6-phosphate aminotransferase YP_001190080.1 5051451 R 399739 CDS YP_001190081.1 146309616 5106913 complement(5053312..5054082) 1 NC_009439.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator 5054082 5106913 Pmen_4603 Pseudomonas mendocina ymp DeoR family transcriptional regulator YP_001190081.1 5053312 R 399739 CDS YP_001190082.1 146309617 5106914 complement(5054156..5054767) 1 NC_009439.1 PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 5054767 5106914 Pmen_4604 Pseudomonas mendocina ymp lysine exporter protein LysE/YggA YP_001190082.1 5054156 R 399739 CDS YP_001190083.1 146309618 5106915 complement(5054824..5056182) 1 NC_009439.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase 5056182 5106915 Pmen_4605 Pseudomonas mendocina ymp glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase YP_001190083.1 5054824 R 399739 CDS YP_001190084.1 146309619 5106916 complement(5056305..5056739) 1 NC_009439.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 5056739 atpC 5106916 atpC Pseudomonas mendocina ymp F0F1 ATP synthase subunit epsilon YP_001190084.1 5056305 R 399739 CDS YP_001190085.1 146309620 5106917 complement(5056819..5058195) 1 NC_009439.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 5058195 5106917 Pmen_4607 Pseudomonas mendocina ymp F0F1 ATP synthase subunit beta YP_001190085.1 5056819 R 399739 CDS YP_001190086.1 146309621 5106918 complement(5058243..5059106) 1 NC_009439.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 5059106 5106918 Pmen_4608 Pseudomonas mendocina ymp F0F1 ATP synthase subunit gamma YP_001190086.1 5058243 R 399739 CDS YP_001190087.1 146309622 5106919 complement(5059155..5060699) 1 NC_009439.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 5060699 5106919 Pmen_4609 Pseudomonas mendocina ymp F0F1 ATP synthase subunit alpha YP_001190087.1 5059155 R 399739 CDS YP_001190088.1 146309623 5106920 complement(5060715..5061251) 1 NC_009439.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; ATP synthase F1 subunit delta 5061251 5106920 Pmen_4610 Pseudomonas mendocina ymp ATP synthase F1 subunit delta YP_001190088.1 5060715 R 399739 CDS YP_001190089.1 146309624 5106921 complement(5061264..5061734) 1 NC_009439.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; ATP synthase F0 subunit B 5061734 5106921 Pmen_4611 Pseudomonas mendocina ymp ATP synthase F0 subunit B YP_001190089.1 5061264 R 399739 CDS YP_001190090.1 146309625 5106922 complement(5061820..5062047) 1 NC_009439.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 5062047 5106922 Pmen_4612 Pseudomonas mendocina ymp F0F1 ATP synthase subunit C YP_001190090.1 5061820 R 399739 CDS YP_001190091.1 146309626 5106923 complement(5062113..5062931) 1 NC_009439.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 5062931 5106923 Pmen_4613 Pseudomonas mendocina ymp F0F1 ATP synthase subunit A YP_001190091.1 5062113 R 399739 CDS YP_001190092.1 146309627 5106924 complement(5062956..5063345) 1 NC_009439.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 5063345 5106924 Pmen_4614 Pseudomonas mendocina ymp F0F1 ATP synthase subunit I YP_001190092.1 5062956 R 399739 CDS YP_001190093.1 146309628 5106925 complement(5063477..5064346) 1 NC_009439.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; chromosome segregation DNA-binding protein 5064346 5106925 Pmen_4615 Pseudomonas mendocina ymp chromosome segregation DNA-binding protein YP_001190093.1 5063477 R 399739 CDS YP_001190094.1 146309629 5106926 complement(5064358..5065146) 1 NC_009439.1 PFAM: Cobyrinic acid a,c-diamide synthase; chromosome segregation ATPase 5065146 5106926 Pmen_4616 Pseudomonas mendocina ymp chromosome segregation ATPase YP_001190094.1 5064358 R 399739 CDS YP_001190095.1 146309630 5106927 complement(5065158..5065802) 1 NC_009439.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 5065802 gidB 5106927 gidB Pseudomonas mendocina ymp 16S rRNA methyltransferase GidB YP_001190095.1 5065158 R 399739 CDS YP_001190096.1 146309631 5106928 complement(5065802..5067694) 1 NC_009439.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 5067694 5106928 Pmen_4618 Pseudomonas mendocina ymp tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001190096.1 5065802 R 399739 CDS YP_001190097.1 146309632 5106929 complement(5068301..5069668) 1 NC_009439.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 5069668 trmE 5106929 trmE Pseudomonas mendocina ymp tRNA modification GTPase TrmE YP_001190097.1 5068301 R 399739 CDS YP_001190098.1 146309633 5106930 complement(5069826..5071571) 1 NC_009439.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 5071571 5106930 Pmen_4620 Pseudomonas mendocina ymp putative inner membrane protein translocase component YidC YP_001190098.1 5069826 R 399739 CDS YP_001190099.1 146309634 5106931 complement(5071574..5071819) 1 NC_009439.1 PFAM: protein of unknown function DUF37; hypothetical protein 5071819 5106931 Pmen_4621 Pseudomonas mendocina ymp hypothetical protein YP_001190099.1 5071574 R 399739 CDS YP_001190100.1 146309635 5106932 complement(5071812..5072216) 1 NC_009439.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 5072216 rnpA 5106932 rnpA Pseudomonas mendocina ymp ribonuclease P YP_001190100.1 5071812 R 399739 CDS YP_001190101.1 146309636 5106933 complement(5072230..5072364) 1 NC_009439.1 PFAM: ribosomal protein L34; 50S ribosomal protein L34 5072364 5106933 Pmen_4623 Pseudomonas mendocina ymp 50S ribosomal protein L34 YP_001190101.1 5072230 R 399739 CDS