-- dump date 20240506_030426 -- class Genbank::Contig -- table contig_comment -- id comment NZ_CP024159.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP024159.1.REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interactionREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab.REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: FullREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: YesREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0xREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62 Pseudo Genes (ambiguous residues) :: 0 of 62REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62 Pseudo Genes (ambiguous residues) :: 0 of 62 Pseudo Genes (frameshifted) :: 18 of 62REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62 Pseudo Genes (ambiguous residues) :: 0 of 62 Pseudo Genes (frameshifted) :: 18 of 62 Pseudo Genes (incomplete) :: 49 of 62REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62 Pseudo Genes (ambiguous residues) :: 0 of 62 Pseudo Genes (frameshifted) :: 18 of 62 Pseudo Genes (incomplete) :: 49 of 62 Pseudo Genes (internal stop) :: 9 of 62REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62 Pseudo Genes (ambiguous residues) :: 0 of 62 Pseudo Genes (frameshifted) :: 18 of 62 Pseudo Genes (incomplete) :: 49 of 62 Pseudo Genes (internal stop) :: 9 of 62 Pseudo Genes (multiple problems) :: 11 of 62REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62 Pseudo Genes (ambiguous residues) :: 0 of 62 Pseudo Genes (frameshifted) :: 18 of 62 Pseudo Genes (incomplete) :: 49 of 62 Pseudo Genes (internal stop) :: 9 of 62 Pseudo Genes (multiple problems) :: 11 of 62 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP024159.1. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ Bacteria and source DNA available from plant-microbe interaction lab. ##Genome-Assembly-Data-START## Assembly Method :: AllPaths v. 3.0 Genome Representation :: Full Expected Final Version :: Yes Reference-guided Assembly :: Psedomonas putida A1 Genome Coverage :: 100.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 02/18/2024 02:23:03 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.6 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 5,238 CDSs (total) :: 5,134 Genes (coding) :: 5,072 CDSs (with protein) :: 5,072 Genes (RNA) :: 104 rRNAs :: 8, 7, 7 (5S, 16S, 23S) complete rRNAs :: 8, 7, 7 (5S, 16S, 23S) tRNAs :: 78 ncRNAs :: 4 Pseudo Genes (total) :: 62 CDSs (without protein) :: 62 Pseudo Genes (ambiguous residues) :: 0 of 62 Pseudo Genes (frameshifted) :: 18 of 62 Pseudo Genes (incomplete) :: 49 of 62 Pseudo Genes (internal stop) :: 9 of 62 Pseudo Genes (multiple problems) :: 11 of 62 ##Genome-Annotation-Data-END## COMPLETENESS: full length.